Citrus Sinensis ID: 005958

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------
Protein Sequence
MALCGIGLSQTLEGIDKWCLGGNFSTRLMVHRHFNWKTSARAQRRSSAIQCSSSRKVVSEESVQNEASVSVDDESDSGHVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPRWRVDPSIDMIRWGLGSSAVRITEEYIYRQPQRARLAYFVELMEMLNPHSKPKNWLEFLPGKWRMLYCTGRHIGLTLRQPPARILVGYVRLTVTRPSKSNTNLSFTSDISFTVMTGREWPHDKTGITGKLQINSLFRLMAGRRLYIKEEKTTPGLFSSQSDAQNSLVQKLSGRKWRKAVPFKDIPSSLSVAKLVSGDIELTMSLGHPLNHNVDAAKNIVQEVRTQIPPEMFDLSKFVCGTYVDSRFLVLRGVNGSALLFTRSWS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccEEEEEcccccccccHHHHccccHHcccccccccccccccccccccccccccccEEEEEEcccEEEEEEEEcccccccEEEEEEEEEcccccccccEEEEEEEHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEEcccccccccccEEEEEEEccccccHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEccccccEEEEEcccccccccccccccHHHHcccccccccccHHHHHHHHHHHHHccccccHHHHHHcccccccccccHHHHHHHHHHcccccccccccccccccccHHHHHHHHHcccccccccccHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEcccEEEEEEcccccccccccEEEEEEccccccccEEEEEcEEEEEEccccccccccccccEEEEEEEEEEccccEEEEEcccccccccccccHHHHHHHHHHHcccccccccccccccccccEEEccccEEEEEEccccccccHHHHHHHHHHHHHccccccccccccccccccccEEEEEEcccccEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEEEEEcccEEEEEccccccccccHHHHHHcEEEEccccccccHHHcccccccEEccccccccEEEEEccccEEEccEEEcccccccEEEEEEEEEcccccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEcccccccccEEEEEEccccccHHHHHHHHcccccccHHEEEEcccHcccEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEccccEEEEEEcccHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccEEcccccccHHHHHHHHccccccccccHHHHcccHHcccccccccccHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHccccEEEEEEcccEEEEEcccccccEEEEcEEEEEEEccccccEEEEEccccEEEEcccccccccccccEEEEEEEEEEEccccEEEEEEcccccccccccccHHHHHHHHHHccccccccccHcccccccEEEEEcccEEEEEEcccccccccHHHHHHHHHHHHcccHHHHcHHHHEEccEEccEEEEEEcccccEEEEEcccc
Coil and Loop (DISEMBL)
malcgiglsqtlegidkwclggnfstrlmvhrhfNWKTSARAQrrssaiqcsssrkvvseesvqneasvsvddesdsghvirfnmgdfkildrvsiglsgradEVVFEAIVkdsnsplhnTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGyvsshttsgrSLFTLVHGqyhgsfslRHWLQQADWLPTLEATLALdeesvrkvgddsiggpaASRQLRLIRLLMRDLLIGVNYlhshglahtelrlenvhispvdrhikvgilgnaadfyedgpnnsspdsnmDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSfltkgidpsCLREFLLQVLNrnsssgntgfqildrnwGAGWNLLSLLLAtkpskriscldalrhpflcgprwrvdpsidmirwglgssavriteeyiyrQPQRARLAYFVELMEmlnphskpknwleflpgkwrMLYCTgrhigltlrqppariLVGYVRltvtrpsksntnlsftsdisftvmtgrewphdktgitgKLQINSLFRLMAGRRLYIkeekttpglfssqsdAQNSLVQKLSgrkwrkavpfkdipssLSVAKLVSGDIEltmslghplnhnVDAAKNIVQEVrtqippemfdlskfvcgtyvdsRFLVLRGVNGSALLFTRSWS
Flexible Loop (DISEMBL)
MALCGIGLSQTLEGIDKWCLGGNFSTRLMVHRHFNWKtsaraqrrssaiqcsssrkvvseesvqneasvsvddesdsghvIRFNMGDFKILDRVSIGLSGRADEVVFEAIvkdsnsplhntkvVLRQLIsvqaqrrgrraiEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESvrkvgddsiggpaaSRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADfyedgpnnsspdsnMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRhpflcgprwrvdpsiDMIRWGLgssavriteeyiyRQPQRARLAYFVELMEMLnphskpknwLEFLPGKWRMLYCTGRHigltlrqppaRILVGYVRLtvtrpsksntnlsftsdISFTVMTGrewphdktgitgklqiNSLFRLMAGRRLYIKEEKttpglfssqsdaqNSLVQKlsgrkwrkavpfkdipsslsVAKLVSGDIELTMSLGHPLNHNVDAAKNIVQEVRTQIPPEMFDLSKFVCGTYVDSRFLVlrgvngsallftrsws
Low Complexity Region (SEG)
MALCGIGLSQTLEGIDKWCLGGNFSTRLMVHRHFNWKTSARAQRRSSAIQCsssrkvvseesvQNEAsvsvddesdsGHVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASrqlrlirllmrdllIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPRWRVDPSIDMIRWGLGSSAVRITEEYIYRQPQRARLAYFVELMEMLNPHSKPKNWLEFLPGKWRMLYCTGRHIGLTLRQPPARILVGYVRLTVTRPSKSNTNLSFTSDISFTVMTGREWPHDKTGITGKLQINSLFRLMAGRRLYIKEEKTTPGLFSSQSDAQNSLVQKLSGRKWRKAVPFKDIPSSLSVAKLVSGDIELTMSLGHPLNHNVDAAKNIVQEVRTQIPPEMFDLSKFVCGTYVDSRFLVLRGVNGSALLFTRSWS
Disordered region (IsUnstruct)
**LCGIGLSQTLEGIDKWCLGGNFSTRLMVHRHFNWKT****************************************HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKV****IGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFY*****************MMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPRWRVDPSIDMIRWGLGSSAVRITEEYIYRQPQRARLAYFVELMEMLNPHSKPKNWLEFLPGKWRMLYCTGRHIGLTLRQPPARILVGYVRLTVTRPSKSNTNLSFTSDISFTVMTGREWPHDKTGITGKLQINSLFRLMAGRRLYIKE*************************KWRKAVPFKDIPSSLSVAKLVSGDIELTMSLGHPLNHNVDAAKNIVQEVRTQIPPEMFDLSKFVCGTYVDSRFLVLRGVNGSALLFT****
Disordered Region (DISOPRED)
********SQTLEGIDK*****************************************************************FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKV**********SRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLT*****SCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPRWRVDPSIDMIRWGLGSSAVRITEEYIYRQPQRARLAYFVELMEMLNPHSKPKNWLEFLPGKWRMLYCTGRHIGLTLRQPPARILVGYVRLTVTRPSKSNTNLSFTSDISFTVMTGREWPHDKTGITGKLQINSLFRLMAGRRLYI********************************VPFKDIPSSLSVAKLVSGDIELTMSLGHPLNHNVDAAKNIVQEVRTQIPPEMFDLSKFVCGTYVDSRFLVLRGVNGSALLFTRS**
Disordered Region (DISEMBL)
MALCGIGLSQTLEGIDKWCLGGNFSTRLMVHRHFNWK*************************************SDSGHVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPRWRVDPSIDMIRWGLGSSAVRITEEYIYRQPQRARLAYFVELMEMLNPHSKPKNWLEFLPGKWRMLYCTGRHIGLTLRQPPARILVGYVRLTVTRPSKSNTNLSFTSDISFTVMTGREWPHDKTGITGKLQINSLFRLMAGRRLYIKEEKTTPGLFSSQSDAQNSLVQKLSGRKWRKAVPFKDIPSSLSVAKLVSGDIELTMSLGHPLNHNVDAAKNIVQEVRTQIPPEMFDLSKFVCGTYVDSRFLVLRGVNGSALLFTRSWS
Disordered Region (DISPRO)
**LCGIGLSQTLEGIDKWCLGGNFSTRLMVHRHFNWKTSARAQRRSSAIQCS****************V*VDDESDSGHVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNS*P*SNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPRWRVDPSIDMIRWGLGSSAVRITEEYIYRQPQRARLAYFVELMEMLNPHSKPKNWLEFLPGKWRMLYCTGRHIGLTLRQPPARILVGYVRLTVTRPSKSNTNLSFTSDISFTVMTGREWPHDKTGITGKLQINSLFRLMAGRRLYIKEEK********QSD*QNS******GRKWRKAVPFKDIPSSLSVAKLVSGDIELTMSLGHPLNHNVDAAKNIVQEVRTQIPPEMFDLSKFVCGTYVDSRFLVLRGVNGSALLFTRS**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALCGIGLSQTLEGIDKWCLGGNFSTRLMVHRHFNWKTSARAQRRSSAIQCSSSRKVVSEESVQNEASVSVDDESDSGHVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPRWRVDPSIDMIRWGLGSSAVRITEEYIYRQPQRARLAYFVELMEMLNPHSKPKNWLEFLPGKWRMLYCTGRHIGLTLRQPPARILVGYVRLTVTRPSKSNTNLSFTSDISFTVMTGREWPHDKTGITGKLQINSLFRLMAGRRLYIKEEKTTPGLFSSQSDAQNSLVQKLSGRKWRKAVPFKDIPSSLSVAKLVSGDIELTMSLGHPLNHNVDAAKNIVQEVRTQIPPEMFDLSKFVCGTYVDSRFLVLRGVNGSALLFTRSWS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	667	2.2.26 [Sep-21-2011]
Q9S713	562	Serine/threonine-protein	no	no	0.368	0.437	0.244	1e-10
Q84V18	754	Serine/threonine-protein	N/A	no	0.313	0.277	0.271	7e-10
P23111	294	Cell division control pro	N/A	no	0.257	0.585	0.277	4e-05
P18431	514	Protein kinase shaggy OS=	no	no	0.251	0.326	0.259	0.0001
B4MXR8	787	Serine/threonine-protein	N/A	no	0.211	0.179	0.258	0.0004
P29618	294	Cyclin-dependent kinase A	no	no	0.257	0.585	0.267	0.0006
Q00526	305	Cyclin-dependent kinase 3	yes	no	0.266	0.583	0.261	0.0007

>sp|Q9S713|STT7_ARATH Serine/threonine-protein kinase STN7, chloroplastic OS=Arabidopsis thaliana GN=STN7 PE=1 SV=1

 Score = 68.9 bits (167), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 125/294 (42%), Gaps = 48/294 (16%)

Query: 140 AIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWL 199
           A+E+      RR   +S +  V+G++   +  G   + L   +Y G  +L   +Q  ++ 
Sbjct: 174 AVEIWMNERVRRACGNSCADFVYGFLDKSSKKGPEYWLL--WKYEGESTLAGLMQSKEFP 231

Query: 200 PTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRL 259
             +E  +      + KV D   G     R+ ++I+ +MR LL  ++ LHS G+ H +++ 
Sbjct: 232 YNVETII------LGKVQDLPKG---LERENKIIQTIMRQLLFALDGLHSTGIIHRDVKP 282

Query: 260 ENVHISPVDRHIKVGILGNAAD-----------FYEDGPNNSSPDSNMDRRQMMIA---- 304
           +N+  S   R  K+  LG AAD           F  D P  ++P+  +   Q   A    
Sbjct: 283 QNIIFSEGSRSFKIIDLGAAADLRVGINYIPKEFLLD-PRYAAPEQYIMSTQTPSAPSAP 341

Query: 305 -----------------FDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTK-GIDPSCLRE 346
                            FD+  +G +  +M    L       +F   L +   D +  R+
Sbjct: 342 VAAALSPVLWQMNLPDRFDIYSIGLIFLQMAFPSLRSDSNLIQFNRQLKRCDYDLTAWRK 401

Query: 347 FLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFL 400
               V  R S+    GF+++D + G GW LL+ ++  K  +RIS   AL HP+ 
Sbjct: 402 L---VEPRASADLRRGFELVDLDGGIGWELLTSMVRYKARQRISAKAALAHPYF 452

Serine/threonine protein kinase required for state transition by phosphorylating light-harvesting complex II outer antennae (LCHII). State transition plays a central role in response to environmental changes and allows to adjust to changing light conditions via the redistribution of light excitation energy between photosystem II (PSII) and photosystem I (PSI). Phosphorylates the minor light harvesting protein LHCB4.2/CP29 and is involved in the light-dependent phosphorylation of TSP9. Acts as a key component of the long-term response (LTR) signaling pathway.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q84V18|STT7_CHLRE Serine/threonine-protein kinase stt7, chloroplastic OS=Chlamydomonas reinhardtii GN=STT7 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 100/254 (39%), Gaps = 45/254 (17%)

Query: 183 YHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI 242
           Y G  +L   +++ +W   LE  L   E    +       GP   R+L  I+   R L+ 
Sbjct: 238 YEGDNTLSSLMERREWPYNLEPLLFGRELRAPR-------GPV--RELVTIKEAFRQLVQ 288

Query: 243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADF----------YEDGPNNSSP 292
            V   HS G+ H +++  N  +S  D+ IK+  LG AAD           Y   P  + P
Sbjct: 289 AVAACHSVGIVHRDIKPANCIVSERDKKIKLIDLGAAADLRIGINYVPNEYLLDPRYAPP 348

Query: 293 DSNMDRRQMMIA---------------------FDMRCVGFMMAKMVLRELMDPLIFTKF 331
              +   Q                         FDM   G  + +MV   L +      F
Sbjct: 349 QQYIMSTQTPKPPPKPVAAFLSPILWTMEKPDRFDMYSCGITLLQMVFGHLRNDNALIAF 408

Query: 332 KSFLT--KGIDPSCLREFLLQVLNRN---SSSGNTGFQILDRNWGAGWNLLSLLLATKPS 386
              L   K   P+  RE   ++ +     + S   GF+ LD + GAGW+LL  LLA KP+
Sbjct: 409 NKRLQELKWDLPAWRREEEAKLPSAKGALAESLEAGFEALDADGGAGWDLLMRLLAYKPT 468

Query: 387 KRISCLDALRHPFL 400
            R S    L HP+L
Sbjct: 469 DRPSAAAVLAHPWL 482

Serine/threonine protein kinase required for state transition by phosphorylating light-harvesting complex II outer antennae (LCHII). State transition plays a central role in response to environmental changes and allows to adjust to changing light conditions via the redistribution of light excitation energy between photosystem II (PSII) and photosystem I (PSI).

Chlamydomonas reinhardtii (taxid: 3055)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P23111|CDC2_MAIZE Cell division control protein 2 homolog OS=Zea mays GN=CDC2 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 84/198 (42%), Gaps = 26/198 (13%)

Query: 224 PAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFY 283
           P  ++   LI+  +  +L GV Y HSH + H +L+ +N+ I      +K+   G A  F 
Sbjct: 95  PEFAKNPTLIKSYLYQILHGVAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAF- 153

Query: 284 EDGPNNS-----------SPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELM---DPLIFT 329
              P  +           +P+  +  RQ     D+  VG + A+MV ++ +   D  I  
Sbjct: 154 -GIPVRTFTHEVVTLWYRAPEILLGARQYSTPVDVWSVGCIFAEMVNQKPLFPGDSEIDE 212

Query: 330 KFKSFLTKGIDP-------SCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLA 382
            FK F   G          SCL +F        +    T    LD    AG +LLS +L 
Sbjct: 213 LFKIFRILGTPNEQSWPGVSCLPDFKTAFPRWQAQDLATVVPNLD---PAGLDLLSKMLR 269

Query: 383 TKPSKRISCLDALRHPFL 400
            +PSKRI+   AL H + 
Sbjct: 270 YEPSKRITARQALEHEYF 287

Plays a key role in the control of the eukaryotic cell cycle. Component of the kinase complex that phosphorylates the repetitive C-terminus of RNA polymerase II.

Zea mays (taxid: 4577)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 3

>sp|P18431|SGG_DROME Protein kinase shaggy OS=Drosophila melanogaster GN=sgg PE=1 SV=3

 Score = 48.9 bits (115), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 78/189 (41%), Gaps = 21/189 (11%)

Query: 230 LRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNN 289
           +  IRL M  L   + Y+HS G+ H +++ +N+ + P    +K+   G+A       PN 
Sbjct: 153 INFIRLYMYQLFRSLAYIHSLGICHRDIKPQNLLLDPETAVLKLCDFGSAKQLLHGEPNV 212

Query: 290 SSPDSNMDRRQMMI--------AFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDP 341
           S   S   R   +I          D+   G ++A+++L + + P      +      +  
Sbjct: 213 SYICSRYYRAPELIFGAINYTTKIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEVIKVLG 272

Query: 342 SCLREFLLQVLNRNSSSGNTGF-QILDRNW---------GAGWNLLSLLLATKPSKRISC 391
           +  RE   Q+   N +     F QI    W             NL+SLLL   PS RI+ 
Sbjct: 273 TPTRE---QIREMNPNYTEFKFPQIKSHPWQKVFRIRTPTEAINLVSLLLEYTPSARITP 329

Query: 392 LDALRHPFL 400
           L A  HPF 
Sbjct: 330 LKACAHPFF 338

Required for several developmental events such as synctial blastoderm formation and embryonic segmentation. Is involved in transcriptional regulation. Required for Arm phosphorylation. Wg signaling operates by inactivating the Sgg repression of en autoactivation.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|B4MXR8|PLK4_DROWI Serine/threonine-protein kinase PLK4 OS=Drosophila willistoni GN=SAK PE=3 SV=1

 Score = 47.4 bits (111), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 33/174 (18%)

Query: 236 LMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG--------- 286
           +++ ++ G+ YLHSH + H ++ L N+ +S  D H+K+   G A                
Sbjct: 119 ILQQVVAGLLYLHSHNIMHRDISLSNLLLSK-DMHVKIADFGLATQLKRPDEKHMTMCGT 177

Query: 287 PNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLRE 346
           PN  SP+  + R    +A D+  VG ++  +V+     P      +S L K +    + E
Sbjct: 178 PNFISPEV-VSRLSHGLAADVWSVGCLLYTLVVGR--PPFDTDAVQSTLNKVV----MSE 230

Query: 347 FLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFL 400
           F++          +  F+  D        L+  LL   P +RIS    LRHPF+
Sbjct: 231 FIMPT--------HLSFEACD--------LIEKLLKKNPHERISLEQVLRHPFM 268

Serine/threonine-protein kinase that plays a central role in centriole duplication. Able to trigger procentriole formation on the surface of the mother centriole cylinder, using mother centriole as a platform, leading to the recruitment of centriole biogenesis proteins such as sas-6. When overexpressed, it is able to induce centrosome amplification through the simultaneous generation of multiple procentrioles adjoining each parental centriole during S phase. Centrosome amplification following overexpression can initiate tumorigenesis, highlighting the importance of centrosome regulation in cancers.

Drosophila willistoni (taxid: 7260)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 1

>sp|P29618|CDKA1_ORYSJ Cyclin-dependent kinase A-1 OS=Oryza sativa subsp. japonica GN=CDKA-1 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 83/198 (41%), Gaps = 26/198 (13%)

Query: 224 PAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFY 283
           P  ++   LI+  +  +L GV Y HSH + H +L+ +N+ I      +K+   G A  F 
Sbjct: 95  PEFAKNPTLIKSYLYQILRGVAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAF- 153

Query: 284 EDGPNNS-----------SPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELM---DPLIFT 329
              P  +           +P+  +  RQ     DM  VG + A+MV ++ +   D  I  
Sbjct: 154 -GIPVRTFTHEVVTLWYRAPEILLGSRQYSTPVDMWSVGCIFAEMVNQKPLFPGDSEIDE 212

Query: 330 KFKSFLTKGIDP-------SCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLA 382
            FK F   G          S L ++        +    T    LD    AG +LLS +L 
Sbjct: 213 LFKIFRVLGTPNEQSWPGVSSLPDYKSAFPKWQAQDLATIVPTLD---PAGLDLLSKMLR 269

Query: 383 TKPSKRISCLDALRHPFL 400
            +P+KRI+   AL H + 
Sbjct: 270 YEPNKRITARQALEHEYF 287

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 3

>sp|Q00526|CDK3_HUMAN Cyclin-dependent kinase 3 OS=Homo sapiens GN=CDK3 PE=1 SV=1

 Score = 46.6 bits (109), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 86/199 (43%), Gaps = 21/199 (10%)

Query: 224 PAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFY 283
           P +   L LI+  +  LL GV++ HSH + H +L+ +N+ I+ +   IK+   G A  F 
Sbjct: 95  PGSELPLHLIKSYLFQLLQGVSFCHSHRVIHRDLKPQNLLINELGA-IKLADFGLARAF- 152

Query: 284 EDGPNNS-----------SPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELM---DPLIFT 329
              P  +           +P+  +  +    A D+  +G + A+MV R+ +   D  I  
Sbjct: 153 -GVPLRTYTHEVVTLWYRAPEILLGSKFYTTAVDIWSIGCIFAEMVTRKALFPGDSEIDQ 211

Query: 330 KFKSFLTKGIDPSCLREFLLQVLNRNSSSGN---TGFQILDRNWGA-GWNLLSLLLATKP 385
            F+ F   G         + Q+ +   S       G + +  N    G +LL  LL   P
Sbjct: 212 LFRIFRMLGTPSEDTWPGVTQLPDYKGSFPKWTRKGLEEIVPNLEPEGRDLLMQLLQYDP 271

Query: 386 SKRISCLDALRHPFLCGPR 404
           S+RI+   AL HP+   P 
Sbjct: 272 SQRITAKTALAHPYFSSPE 290

Serine/threonine-protein kinase that plays a critical role in the control of the eukaryotic cell cycle; involved in G0-G1 and G1-S cell cycle transitions. Interacts with CCNC/cyclin-C during interphase. Phosphorylates histone H1, ATF1, RB1 and CABLES1. ATF1 phosphorylation triggers ATF1 transactivation and transcriptional activities, and promotes cell proliferation and transformation. CDK3/cyclin-C mediated RB1 phosphorylation is required for G0-G1 transition. Promotes G1-S transition probably by contributing to the activation of E2F1, E2F2 and E2F3 in a RB1-independent manner.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	667
302144036	670	unnamed protein product [Vitis vinifera]	0.992	0.988	0.734	0.0
147836390	685	hypothetical protein VITISV_033984 [Viti	0.994	0.967	0.716	0.0
255544980	666	ATP binding protein, putative [Ricinus c	0.989	0.990	0.733	0.0
225455098	608	PREDICTED: uncharacterized protein LOC10	0.905	0.993	0.777	0.0
356518625	673	PREDICTED: uncharacterized protein LOC10	0.989	0.980	0.694	0.0
356507584	673	PREDICTED: uncharacterized protein LOC10	0.989	0.980	0.694	0.0
357463895	760	hypothetical protein MTR_3g091290 [Medic	0.992	0.871	0.683	0.0
449455940	664	PREDICTED: uncharacterized protein LOC10	0.949	0.953	0.696	0.0
312281573	673	unnamed protein product [Thellungiella h	0.986	0.977	0.687	0.0
30696335	670	OBP3-responsive protein 1 [Arabidopsis t	0.985	0.980	0.672	0.0

>gi|302144036|emb|CBI23141.3| unnamed protein product [Vitis vinifera]

 Score = 1007 bits (2603), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/671 (73%), Positives = 562/671 (83%), Gaps = 9/671 (1%)

Query: 1   MALCGIGLSQTLEGIDKWCLGGNFSTRLMVHR--HFNWKTSARAQRRSSAIQCSSSRK-- 56
           MALCG GL  +LE +       N STRL+       N +  +  Q++   ++CS SRK  
Sbjct: 1   MALCGTGLKLSLESVGVGYYSKNSSTRLLRSSGTSLNQRKHSSLQQKCWRVRCSLSRKST 60

Query: 57  --VVSEESVQNEASVSVDDESDSGHVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDS 114
             + SE++VQ+ +SV V++E +  HVI+F + DFKI DRVS+GL GRADEVVFEA VKDS
Sbjct: 61  LPMESEDNVQSVSSVLVEEELE--HVIKFKISDFKISDRVSVGLGGRADEVVFEATVKDS 118

Query: 115 NSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRS 174
            SPL++T+VVLRQLIS QA+RRG+RAIEVLK+LVRRRLMYHSYSMQVHGYV S       
Sbjct: 119 QSPLNDTRVVLRQLISAQAKRRGKRAIEVLKRLVRRRLMYHSYSMQVHGYVPSPMIGDGG 178

Query: 175 LFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR 234
            FTLVHG YHGSFSLRHWLQ +DWLPTLEATLALDEESVR+VGDD++GGPA SRQLRLIR
Sbjct: 179 SFTLVHG-YHGSFSLRHWLQLSDWLPTLEATLALDEESVRRVGDDTVGGPAVSRQLRLIR 237

Query: 235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNSSPDS 294
           +LMRDLLIGVNYLHSHGLAHTELRLENVHI PVDRHIKVGILGNAADFYE   N+S+ DS
Sbjct: 238 ILMRDLLIGVNYLHSHGLAHTELRLENVHICPVDRHIKVGILGNAADFYESSQNSSTLDS 297

Query: 295 NMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNR 354
           NM+RRQMMIAFDMRCVGFMMAKMVLRELMDP IF KFKSFLTKG DPSCLREFLLQ+LNR
Sbjct: 298 NMERRQMMIAFDMRCVGFMMAKMVLRELMDPTIFAKFKSFLTKGNDPSCLREFLLQILNR 357

Query: 355 NSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPRWRVDPSIDMI 414
           NSSSGN G QILDRNWGAGWNLLS LLATK SKRISCLDALRHPFLCGPRWRV PS+D+I
Sbjct: 358 NSSSGNAGLQILDRNWGAGWNLLSSLLATKSSKRISCLDALRHPFLCGPRWRVSPSMDII 417

Query: 415 RWGLGSSAVRITEEYIYRQPQRARLAYFVELMEMLNPHSKPKNWLEFLPGKWRMLYCTGR 474
           RWGLGS+AVRI+EEYIYR PQR RLA+F+ELMEMLNP+SKP+NWLE LPGKWR+LY TGR
Sbjct: 418 RWGLGSTAVRISEEYIYRLPQRTRLAHFIELMEMLNPYSKPRNWLELLPGKWRLLYSTGR 477

Query: 475 HIGLTLRQPPARILVGYVRLTVTRPSKSNTNLSFTSDISFTVMTGREWPHDKTGITGKLQ 534
           HIGLTLRQP AR+L+G V LTV+R S  NTNLS TSDI FTVM  + WPHDK+G TGKLQ
Sbjct: 478 HIGLTLRQPSARVLIGDVHLTVSRTSTLNTNLSLTSDIGFTVMVNQNWPHDKSGTTGKLQ 537

Query: 535 INSLFRLMAGRRLYIKEEKTTPGLFSSQSDAQNSLVQKLSGRKWRKAVPFKDIPSSLSVA 594
           +N++FRL AGRRLY+KE+KTT    S  S +QNS+++K SGRKWRKA+PFK+ PS+L VA
Sbjct: 538 VNAMFRLTAGRRLYLKEDKTTGKFPSPSSTSQNSVIRKFSGRKWRKAIPFKEFPSTLPVA 597

Query: 595 KLVSGDIELTMSLGHPLNHNVDAAKNIVQEVRTQIPPEMFDLSKFVCGTYVDSRFLVLRG 654
           K    D+ELTMSL  PL+ NVD AK +V+EVRTQ+PPE+FDLSK VCGTY+D R LVLRG
Sbjct: 598 KFTPHDVELTMSLDDPLSTNVDIAKTVVREVRTQVPPEIFDLSKIVCGTYLDPRLLVLRG 657

Query: 655 VNGSALLFTRS 665
           V+GSALLFTRS
Sbjct: 658 VSGSALLFTRS 668

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147836390|emb|CAN75419.1| hypothetical protein VITISV_033984 [Vitis vinifera]

 Score =  997 bits (2578), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/685 (71%), Positives = 560/685 (81%), Gaps = 22/685 (3%)

Query: 1   MALCGIGLSQTLEGIDKWCLGGNFSTRLMVHR--HFNWKTSARAQRRSSAIQCSSSRK-- 56
           MALCG GL  +LE +       N STRL+       N +  +  Q++   ++CS SRK  
Sbjct: 1   MALCGTGLKLSLESVGVGYYSKNSSTRLLRSSGTSLNQRKHSSLQQKCWRVRCSLSRKST 60

Query: 57  --VVSEESVQNEASVSVDDESDSGHVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDS 114
             + SE +VQ+ +SV V++E +  HVI+F + DFKI DRVS+GL GRADEVVFEA VKDS
Sbjct: 61  LPMESEXNVQSVSSVLVEEELE--HVIKFKISDFKISDRVSVGLGGRADEVVFEATVKDS 118

Query: 115 NSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRS 174
            SPL++T+VVLRQLIS QA+RRG+RAIEVLK+LVRRRLMYHSYSMQVHGYV S       
Sbjct: 119 QSPLNDTRVVLRQLISAQAKRRGKRAIEVLKRLVRRRLMYHSYSMQVHGYVPSPMIGDGG 178

Query: 175 LFTLVHG--------------QYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDS 220
            FTLVHG               YHG FSLRHWLQ +DWLPTLEATLALDEESVR+VGDD+
Sbjct: 179 SFTLVHGVGPSLSKTNSYASTHYHGXFSLRHWLQLSDWLPTLEATLALDEESVRRVGDDT 238

Query: 221 IGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAA 280
           +GGPA SRQLRLIR+LMRDLLIGVNYLHSHGLAHTELRLENVHI PVDRHIKVGILGNAA
Sbjct: 239 VGGPAVSRQLRLIRILMRDLLIGVNYLHSHGLAHTELRLENVHICPVDRHIKVGILGNAA 298

Query: 281 DFYEDGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGID 340
           DFYE   N+S+ DSNM+RRQMMIAFDMRCVGFMMAKMVLRELMDP IF KFKSFLTKG D
Sbjct: 299 DFYESSQNSSTLDSNMERRQMMIAFDMRCVGFMMAKMVLRELMDPTIFAKFKSFLTKGND 358

Query: 341 PSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFL 400
           PSCLREFLLQ LNRNSSSGN G QILDRNWGAGWNLLS LLATK SKRISCLDALRHPFL
Sbjct: 359 PSCLREFLLQSLNRNSSSGNAGLQILDRNWGAGWNLLSSLLATKSSKRISCLDALRHPFL 418

Query: 401 CGPRWRVDPSIDMIRWGLGSSAVRITEEYIYRQPQRARLAYFVELMEMLNPHSKPKNWLE 460
           CGPRWRV+PS+D+IRWGLGS+AVRI+EEYIYR PQR RLA+F+ELMEMLNP+SKP+NWLE
Sbjct: 419 CGPRWRVNPSMDIIRWGLGSTAVRISEEYIYRLPQRTRLAHFIELMEMLNPYSKPRNWLE 478

Query: 461 FLPGKWRMLYCTGRHIGLTLRQPPARILVGYVRLTVTRPSKSNTNLSFTSDISFTVMTGR 520
            LPGKWR+LY TGRHIGLTLRQP AR+L+G V LTV+R S  NTNLS TSDI FTVM  +
Sbjct: 479 LLPGKWRLLYSTGRHIGLTLRQPSARVLIGDVHLTVSRTSTLNTNLSLTSDIGFTVMVNQ 538

Query: 521 EWPHDKTGITGKLQINSLFRLMAGRRLYIKEEKTTPGLFSSQSDAQNSLVQKLSGRKWRK 580
            WPHDK+G TGKLQ+N++FRL AGRRLY+KE+KTT    S  S +QNS+++K SGRKWRK
Sbjct: 539 NWPHDKSGTTGKLQVNAMFRLTAGRRLYLKEDKTTGKFPSPSSTSQNSVIRKFSGRKWRK 598

Query: 581 AVPFKDIPSSLSVAKLVSGDIELTMSLGHPLNHNVDAAKNIVQEVRTQIPPEMFDLSKFV 640
           A+PFK+ PS+L VAK    D+ELTMSL  PL+ NVD AK +V+EVRTQ+PPE+FDLSK V
Sbjct: 599 AIPFKEFPSTLPVAKFTPHDVELTMSLDDPLSTNVDIAKTVVREVRTQVPPEIFDLSKIV 658

Query: 641 CGTYVDSRFLVLRGVNGSALLFTRS 665
           CGTY+D R LVLRGV+GSALLFT+S
Sbjct: 659 CGTYLDPRLLVLRGVSGSALLFTKS 683

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544980|ref|XP_002513551.1| ATP binding protein, putative [Ricinus communis] gi|223547459|gb|EEF48954.1| ATP binding protein, putative [Ricinus communis]

 Score =  992 bits (2565), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/665 (73%), Positives = 556/665 (83%), Gaps = 5/665 (0%)

Query: 1   MALCGIGLSQTLEGIDKWCLGGNFSTRLMVHRHFNWKTSARAQRRSSAIQCSSSRKVVSE 60
           MAL G  L++  E     C G N  T+L+       K  + A      +    S+     
Sbjct: 1   MALRGPDLTRRPERFGAKCYGENLRTKLITPSSLCVKRKSFASYHRRELFKVYSKAASPI 60

Query: 61  ESVQNEASVSVDDESDSGHVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHN 120
           ES  N  ++SV DE  SGHVI+F M DFK+LDRVS+GL GRA+EVV+EAIVKDS+SPL+N
Sbjct: 61  ESQDN--ALSVQDEEGSGHVIKFRMSDFKLLDRVSVGLGGRANEVVYEAIVKDSSSPLYN 118

Query: 121 TKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVH 180
            KVVLRQL+S QAQRRG+RAIEVLKKLVRR+L+YHSYSMQVHGY+ S  TSG  LFTLVH
Sbjct: 119 NKVVLRQLVSAQAQRRGKRAIEVLKKLVRRKLLYHSYSMQVHGYICSPATSGSGLFTLVH 178

Query: 181 GQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL 240
           G YHGSFSL+HWLQQ+DWLPTLEATLALDEESVR+VGDD++GGPA SRQLR+IR+LMRDL
Sbjct: 179 G-YHGSFSLQHWLQQSDWLPTLEATLALDEESVRRVGDDTVGGPAVSRQLRIIRILMRDL 237

Query: 241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNSSPDSNMDRRQ 300
           LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG   ++ D+ +DRRQ
Sbjct: 238 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-TTTALDNCIDRRQ 296

Query: 301 MMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGN 360
           MMIAFDMRCVGFM+AKMVLRELMDPLIFT+FKSFL KG DP CLREFLLQ+L+RN  SG+
Sbjct: 297 MMIAFDMRCVGFMIAKMVLRELMDPLIFTRFKSFLMKGNDPCCLREFLLQILSRNCPSGS 356

Query: 361 TGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPRWRVDPSIDMIRWGLGS 420
            GFQ+LDRN GAGWNLLSLLLATKPSKRISCLDALRHPFLCGPRWRV PS+D+IRWGLGS
Sbjct: 357 AGFQMLDRNSGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPRWRVVPSMDIIRWGLGS 416

Query: 421 SAVRITEEYIYRQPQRARLAYFVELMEMLNPHSKPKNWLEFLPGKWRMLYCTGRHIGLTL 480
           +AVRITEEYIY +PQR RL+YF+ELMEMLNPHSK KNWLE LPGKWR+LYCTGRHIGLTL
Sbjct: 417 AAVRITEEYIYSRPQRNRLSYFIELMEMLNPHSKAKNWLELLPGKWRLLYCTGRHIGLTL 476

Query: 481 RQPPARILVGYVRLTVTRPSKSNTNLSFTSDISFTVMTGREWPHDKTGITGKLQINSLFR 540
           RQ  AR+L+G V LTV+R SK  T+LSFTS++ F VM  R+WPHDK G+ GKL++NSLFR
Sbjct: 477 RQSSARVLIGDVTLTVSRASKLKTSLSFTSEVGFKVMISRDWPHDKNGMAGKLEVNSLFR 536

Query: 541 LMAGRRLYIKEEKTTPGLFSSQSDAQNSLVQKLSGRKWRKAVPFKDIPSSLSVAKLVSGD 600
           LM+G RLYI+EEKTT  L   QS   +SL+QKLSGRKWRKAVPFK+ PSSL VAKLVSG+
Sbjct: 537 LMSGSRLYIREEKTTERLSFGQSSNLDSLLQKLSGRKWRKAVPFKEFPSSLPVAKLVSGE 596

Query: 601 IELTMSLGHPLNHNVDAAKNIVQEVRTQIPPEMFDLSKFVCGTYVDSRFLVLRGVNGSAL 660
           +E+TM++G  L  +V  A+NIVQE R QIPPEMFDLSK VCGT+VDSR LVLRGVNGSAL
Sbjct: 597 VEVTMNIGDTLGKDV-IARNIVQEARIQIPPEMFDLSKLVCGTFVDSRLLVLRGVNGSAL 655

Query: 661 LFTRS 665
           LFTRS
Sbjct: 656 LFTRS 660

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455098|ref|XP_002268087.1| PREDICTED: uncharacterized protein LOC100248606 [Vitis vinifera]

 Score =  982 bits (2539), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/607 (77%), Positives = 531/607 (87%), Gaps = 3/607 (0%)

Query: 59  SEESVQNEASVSVDDESDSGHVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPL 118
           SE++VQ+ +SV V++E +  HVI+F + DFKI DRVS+GL GRADEVVFEA VKDS SPL
Sbjct: 3   SEDNVQSVSSVLVEEELE--HVIKFKISDFKISDRVSVGLGGRADEVVFEATVKDSQSPL 60

Query: 119 HNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTL 178
           ++T+VVLRQLIS QA+RRG+RAIEVLK+LVRRRLMYHSYSMQVHGYV S        FTL
Sbjct: 61  NDTRVVLRQLISAQAKRRGKRAIEVLKRLVRRRLMYHSYSMQVHGYVPSPMIGDGGSFTL 120

Query: 179 VHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR 238
           VHG YHGSFSLRHWLQ +DWLPTLEATLALDEESVR+VGDD++GGPA SRQLRLIR+LMR
Sbjct: 121 VHG-YHGSFSLRHWLQLSDWLPTLEATLALDEESVRRVGDDTVGGPAVSRQLRLIRILMR 179

Query: 239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNSSPDSNMDR 298
           DLLIGVNYLHSHGLAHTELRLENVHI PVDRHIKVGILGNAADFYE   N+S+ DSNM+R
Sbjct: 180 DLLIGVNYLHSHGLAHTELRLENVHICPVDRHIKVGILGNAADFYESSQNSSTLDSNMER 239

Query: 299 RQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSS 358
           RQMMIAFDMRCVGFMMAKMVLRELMDP IF KFKSFLTKG DPSCLREFLLQ+LNRNSSS
Sbjct: 240 RQMMIAFDMRCVGFMMAKMVLRELMDPTIFAKFKSFLTKGNDPSCLREFLLQILNRNSSS 299

Query: 359 GNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPRWRVDPSIDMIRWGL 418
           GN G QILDRNWGAGWNLLS LLATK SKRISCLDALRHPFLCGPRWRV PS+D+IRWGL
Sbjct: 300 GNAGLQILDRNWGAGWNLLSSLLATKSSKRISCLDALRHPFLCGPRWRVSPSMDIIRWGL 359

Query: 419 GSSAVRITEEYIYRQPQRARLAYFVELMEMLNPHSKPKNWLEFLPGKWRMLYCTGRHIGL 478
           GS+AVRI+EEYIYR PQR RLA+F+ELMEMLNP+SKP+NWLE LPGKWR+LY TGRHIGL
Sbjct: 360 GSTAVRISEEYIYRLPQRTRLAHFIELMEMLNPYSKPRNWLELLPGKWRLLYSTGRHIGL 419

Query: 479 TLRQPPARILVGYVRLTVTRPSKSNTNLSFTSDISFTVMTGREWPHDKTGITGKLQINSL 538
           TLRQP AR+L+G V LTV+R S  NTNLS TSDI FTVM  + WPHDK+G TGKLQ+N++
Sbjct: 420 TLRQPSARVLIGDVHLTVSRTSTLNTNLSLTSDIGFTVMVNQNWPHDKSGTTGKLQVNAM 479

Query: 539 FRLMAGRRLYIKEEKTTPGLFSSQSDAQNSLVQKLSGRKWRKAVPFKDIPSSLSVAKLVS 598
           FRL AGRRLY+KE+KTT    S  S +QNS+++K SGRKWRKA+PFK+ PS+L VAK   
Sbjct: 480 FRLTAGRRLYLKEDKTTGKFPSPSSTSQNSVIRKFSGRKWRKAIPFKEFPSTLPVAKFTP 539

Query: 599 GDIELTMSLGHPLNHNVDAAKNIVQEVRTQIPPEMFDLSKFVCGTYVDSRFLVLRGVNGS 658
            D+ELTMSL  PL+ NVD AK +V+EVRTQ+PPE+FDLSK VCGTY+D R LVLRGV+GS
Sbjct: 540 HDVELTMSLDDPLSTNVDIAKTVVREVRTQVPPEIFDLSKIVCGTYLDPRLLVLRGVSGS 599

Query: 659 ALLFTRS 665
           ALLFTRS
Sbjct: 600 ALLFTRS 606

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518625|ref|XP_003527979.1| PREDICTED: uncharacterized protein LOC100810786 [Glycine max]

 Score =  957 bits (2474), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/672 (69%), Positives = 546/672 (81%), Gaps = 12/672 (1%)

Query: 1   MALCGIGLSQTLEGIDKWCLGGNFSTRLMVHR--HFNWKTSARAQRRSSAIQCSSSRKVV 58
           MALCG G +     I       N ST+L+V     F  +     +R+   + CSS R   
Sbjct: 1   MALCGTGPNP----IPGSYSAQNLSTKLIVPALLPFTGQFYNLVRRKRKGVCCSSLRNAA 56

Query: 59  SEESVQNE----ASVSVDDESDSGHVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDS 114
           S  S +++    +++SV  E ++ HVIRF M DFKILD VS+GL GR DEV+FE +VKDS
Sbjct: 57  SASSKESQEDAPSTLSVYLEEETDHVIRFKMSDFKILDTVSVGLGGRPDEVIFEGMVKDS 116

Query: 115 NSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRS 174
            SPL NT+VVLRQL S QAQRRG+RAIEVLKKLVRR+L+YHSYSMQVHGY+S   +    
Sbjct: 117 CSPLCNTRVVLRQLSSAQAQRRGKRAIEVLKKLVRRKLLYHSYSMQVHGYISLPASGVSG 176

Query: 175 LFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR 234
            F LVHG YHGSFSLRHWLQQ+DWLPTLEATLALDEESVRKVG+DS GGPA SRQLRLIR
Sbjct: 177 SFILVHG-YHGSFSLRHWLQQSDWLPTLEATLALDEESVRKVGEDSTGGPAVSRQLRLIR 235

Query: 235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNSSPDS 294
           +LMRDLLIGVNYLHSHGLAHTELRLENVHISP+DRHIKVGILGNAADFY+DG N SS D 
Sbjct: 236 ILMRDLLIGVNYLHSHGLAHTELRLENVHISPIDRHIKVGILGNAADFYKDGSNGSSLD- 294

Query: 295 NMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNR 354
           N+DRRQMMIAFDMRCVGF+MAKMV+RELMDPLIF KFK FL KG DPSCLREF+L++L R
Sbjct: 295 NLDRRQMMIAFDMRCVGFIMAKMVMRELMDPLIFAKFKLFLKKGYDPSCLREFMLEILGR 354

Query: 355 NSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPRWRVDPSIDMI 414
           +S  GN G QILDRNWGAGW+LLSLLLATKPS+RISCLDALRHPFLCGPRWRV PS+D+I
Sbjct: 355 SSPYGNAGLQILDRNWGAGWHLLSLLLATKPSQRISCLDALRHPFLCGPRWRVVPSMDII 414

Query: 415 RWGLGSSAVRITEEYIYRQPQRARLAYFVELMEMLNPHSKPKNWLEFLPGKWRMLYCTGR 474
           RWGLGS+A+RI+EEYIYRQPQR+RLA+F++LMEMLNPH KP+NWLE LPGKWR+LY TG+
Sbjct: 415 RWGLGSTAMRISEEYIYRQPQRSRLAHFIDLMEMLNPHPKPRNWLELLPGKWRLLYSTGK 474

Query: 475 HIGLTLRQPPARILVGYVRLTVTRPSKSNTNLSFTSDISFTVMTGREWPHDKTGITGKLQ 534
           H+GLTLRQPP R++VG V LTVTR SK   NLSF SD  F+VM G++WPHDK G +G+LQ
Sbjct: 475 HVGLTLRQPPLRVIVGDVHLTVTRESKLKANLSFNSDTGFSVMIGQDWPHDKAGKSGRLQ 534

Query: 535 INSLFRLMAGRRLYIKEEKTTPGLFSSQSDAQNSLVQKLSGRKWRKAVPFKDIPSSLSVA 594
           +NS F L +GR LY+K++KTT   F   S    +L QK  G+KWRK VPF+++PSSL  A
Sbjct: 535 VNSSFTLRSGRLLYLKQDKTTEKFFFGPSSNVEALAQKFKGKKWRKVVPFEELPSSLPAA 594

Query: 595 KLVSGDIELTMSLGHPLNHNVDAAKNIVQEVRTQIPPEMFDLSKFVCGTYVDSRFLVLRG 654
           KL SGDI++ M+L  PLN NVD A+N++QE+RTQ+PPE+FDLSK VCGTYVDSR LVLRG
Sbjct: 595 KLASGDIDVRMNLDDPLNQNVDTARNVLQELRTQLPPEIFDLSKLVCGTYVDSRMLVLRG 654

Query: 655 VNGSALLFTRSW 666
           V+GSALLFTRS+
Sbjct: 655 VSGSALLFTRSF 666

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507584|ref|XP_003522544.1| PREDICTED: uncharacterized protein LOC100809306 [Glycine max]

 Score =  952 bits (2461), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/672 (69%), Positives = 547/672 (81%), Gaps = 12/672 (1%)

Query: 1   MALCGIGLSQTLEGIDKWCLGGNFSTRLMVHR--HFNWKTSARAQRRSSAIQCSSSRKVV 58
           MALC  G +     I       N ST+L+V     F  + S   +R+   + CSS R   
Sbjct: 1   MALCRTGPNP----IPGSYSAQNLSTKLIVPAPLRFTRQFSNLVRRKRKGVCCSSLRNAA 56

Query: 59  S---EESVQNE-ASVSVDDESDSGHVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDS 114
           S   +ES+++   ++SV  E ++ HVI+F M DFKILD VS+GL GR DEV+FE +VKDS
Sbjct: 57  SASSKESLEDAPTTLSVCLEEETDHVIQFKMSDFKILDTVSVGLGGRPDEVIFEGMVKDS 116

Query: 115 NSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRS 174
            S L NT+VVLRQL S QAQRRG+RAIEVLKKLVRR+L+YHSYSMQVHGY+S   +    
Sbjct: 117 GSSLCNTRVVLRQLSSAQAQRRGKRAIEVLKKLVRRKLLYHSYSMQVHGYISLPASDASG 176

Query: 175 LFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR 234
            F LVHG YHGSFSLRHWLQQ+DWLPTLEATLALDEESVRKVG+D  GGPA SRQLRL+R
Sbjct: 177 SFILVHG-YHGSFSLRHWLQQSDWLPTLEATLALDEESVRKVGEDFTGGPAVSRQLRLVR 235

Query: 235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNSSPDS 294
           +LMRDLLIGVNYLHSHGLAHTELRLENVHISP+DRHIKVGILGNAADFY+DG N SS D 
Sbjct: 236 ILMRDLLIGVNYLHSHGLAHTELRLENVHISPIDRHIKVGILGNAADFYKDGSNGSSLD- 294

Query: 295 NMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNR 354
           N+DRRQMMIAFDMRC+GF+MAKMV+RELMDPLIF KFKSFLTKG DPSCLREF+L++L R
Sbjct: 295 NLDRRQMMIAFDMRCMGFIMAKMVMRELMDPLIFAKFKSFLTKGYDPSCLREFILEILGR 354

Query: 355 NSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPRWRVDPSIDMI 414
           +S  GN G QILDRNWGAGW+LLSLLLATKPS+RISCLDALRHPFLCGPRWRV PS+D+I
Sbjct: 355 SSPYGNAGLQILDRNWGAGWHLLSLLLATKPSQRISCLDALRHPFLCGPRWRVVPSMDII 414

Query: 415 RWGLGSSAVRITEEYIYRQPQRARLAYFVELMEMLNPHSKPKNWLEFLPGKWRMLYCTGR 474
           RWGLGS+A+RI E+YIYRQPQ++RLA+F++LMEMLNPH +P+NWLE LPGKWR+LY TG+
Sbjct: 415 RWGLGSTAMRIREKYIYRQPQQSRLAHFIDLMEMLNPHPQPRNWLELLPGKWRLLYSTGK 474

Query: 475 HIGLTLRQPPARILVGYVRLTVTRPSKSNTNLSFTSDISFTVMTGREWPHDKTGITGKLQ 534
           H+GLTLRQPP R+LV  V LTVTR SK   NLSF SDI F+VM G++WPHDK G +G+LQ
Sbjct: 475 HVGLTLRQPPLRVLVSDVHLTVTRESKLKDNLSFGSDIGFSVMIGQDWPHDKAGKSGRLQ 534

Query: 535 INSLFRLMAGRRLYIKEEKTTPGLFSSQSDAQNSLVQKLSGRKWRKAVPFKDIPSSLSVA 594
           +NSLF L +GRRLY+K++KTT   F   S    +L QK  G+KWRK VPFK+ PSSL  A
Sbjct: 535 VNSLFTLRSGRRLYLKQDKTTEKFFFGPSSNVEALAQKFKGKKWRKIVPFKEFPSSLPAA 594

Query: 595 KLVSGDIELTMSLGHPLNHNVDAAKNIVQEVRTQIPPEMFDLSKFVCGTYVDSRFLVLRG 654
           KL SGDI++ M+L  PLN NVD A+N++QE+RTQIPPE+FDLS+ VCGTYVDSR LVLRG
Sbjct: 595 KLASGDIDVRMNLDDPLNRNVDTARNVLQELRTQIPPEIFDLSRLVCGTYVDSRMLVLRG 654

Query: 655 VNGSALLFTRSW 666
           VNGSALLFTRS+
Sbjct: 655 VNGSALLFTRSF 666

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463895|ref|XP_003602229.1| hypothetical protein MTR_3g091290 [Medicago truncatula] gi|355491277|gb|AES72480.1| hypothetical protein MTR_3g091290 [Medicago truncatula]

 Score =  937 bits (2421), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/677 (68%), Positives = 543/677 (80%), Gaps = 15/677 (2%)

Query: 1   MALCGIGLSQTLEGIDKWCLGGNFSTRLMVHRHFNWK-TSARAQRRSSAIQCSSSRK--- 56
           MALC  G    LE         N STRL++     +   S+ A +R   + CSSS +   
Sbjct: 81  MALCRTGPYPILESNVLAYSHINLSTRLVLPVPLRFAGQSSNAGKRKHKVICSSSLRRSA 140

Query: 57  ----VVSEESVQNEASVSVDDESDSGHVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVK 112
               + S E V   +SV +++E+D  HV+RF M DFK+LDRVSIGL GRADEVVFE  VK
Sbjct: 141 SASSMESHEEVPKTSSVCLEEETD--HVMRFKMSDFKVLDRVSIGLGGRADEVVFEGKVK 198

Query: 113 DSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSG 172
           DS SPL+NT+V+LRQL S QAQRRG+RAIEVLKKL RR+L+YHSYSMQVHGY+S   + G
Sbjct: 199 DSGSPLYNTRVILRQLYSSQAQRRGKRAIEVLKKLGRRKLLYHSYSMQVHGYISLPASGG 258

Query: 173 RSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRL 232
              F LVHG YHGSFSLRHWLQQ+DWL TLEATLALDEESVRKVG+D+ GGPA SRQLRL
Sbjct: 259 SGSFILVHG-YHGSFSLRHWLQQSDWLQTLEATLALDEESVRKVGEDTTGGPAISRQLRL 317

Query: 233 IRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKV---GILGNAADFYEDGPNN 289
           IR+LMRDLLIGVNYLHSHGLAHT+LRLENVHISP+DRHIKV   G LGNAADF EDG N+
Sbjct: 318 IRILMRDLLIGVNYLHSHGLAHTDLRLENVHISPIDRHIKVSIVGTLGNAADFCEDGSNS 377

Query: 290 SSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLL 349
            S + NMDRRQMMIAFDMRC+GF+MAKMV+ ELMDPLIF KFKSFLTKG DPSCLR+ ++
Sbjct: 378 GSME-NMDRRQMMIAFDMRCMGFIMAKMVMGELMDPLIFAKFKSFLTKGNDPSCLRQLMM 436

Query: 350 QVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPRWRVDP 409
           ++L RNS  GN G Q+LDRNWGAGW+LLSLLLATKPS+RISCLDALRHPFLCGPRWRV P
Sbjct: 437 EILGRNSPYGNAGLQMLDRNWGAGWHLLSLLLATKPSRRISCLDALRHPFLCGPRWRVVP 496

Query: 410 SIDMIRWGLGSSAVRITEEYIYRQPQRARLAYFVELMEMLNPHSKPKNWLEFLPGKWRML 469
           S+D+IRWGLG +A+RI+EEYIYRQPQR+RLA+F++L+EMLNPH KPKNWLE LPGKWR+L
Sbjct: 497 SMDIIRWGLGCTAMRISEEYIYRQPQRSRLAHFIDLLEMLNPHPKPKNWLELLPGKWRLL 556

Query: 470 YCTGRHIGLTLRQPPARILVGYVRLTVTRPSKSNTNLSFTSDISFTVMTGREWPHDKTGI 529
           YCTGRH+GLTLRQPP R+LVG + LTV R SK   NLSF SDI F+VM G++WPHDK G 
Sbjct: 557 YCTGRHVGLTLRQPPVRVLVGDLHLTVNRESKLKANLSFVSDIGFSVMIGQDWPHDKAGK 616

Query: 530 TGKLQINSLFRLMAGRRLYIKEEKTTPGLFSSQSDAQNSLVQKLSGRKWRKAVPFKDIPS 589
            G++Q+NS F L AGRRLY+K++ T+  L    S  + +L QK S +KWRK  PFK+ PS
Sbjct: 617 RGRVQVNSSFILRAGRRLYLKQDNTSERLSFRPSGNEEALAQKFSSKKWRKITPFKEFPS 676

Query: 590 SLSVAKLVSGDIELTMSLGHPLNHNVDAAKNIVQEVRTQIPPEMFDLSKFVCGTYVDSRF 649
           SL  AK  SGDI++TM+L  PLN N+D  +N++QE+RTQIPPE+FDLSK VCGTYVDSR 
Sbjct: 677 SLPAAKFTSGDIDVTMNLDDPLNQNIDTVQNVLQELRTQIPPEIFDLSKIVCGTYVDSRL 736

Query: 650 LVLRGVNGSALLFTRSW 666
           LVLRGVNGSALLFTRS+
Sbjct: 737 LVLRGVNGSALLFTRSF 753

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455940|ref|XP_004145708.1| PREDICTED: uncharacterized protein LOC101205688 [Cucumis sativus] gi|449507632|ref|XP_004163088.1| PREDICTED: uncharacterized protein LOC101226153 [Cucumis sativus]

 Score =  914 bits (2362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/652 (69%), Positives = 523/652 (80%), Gaps = 19/652 (2%)

Query: 19  CLGGNFSTRLM--VHRHFNWKT-SARAQRRSSAIQCSSSRK--VVSEESVQNEASVSVDD 73
           C   N ST L+     HF  +  S+R  R      CSS RK   V+E    ++ ++SV  
Sbjct: 20  CFKDNLSTTLIGPAPVHFVRRIPSSRCLRP----LCSSVRKDLSVAESKRNDQGTLSVSM 75

Query: 74  ESDSGHVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA 133
           E +  HVIRF M DFKILD VS GL GR DE+VFEA+V +  SPL+NTKVVLR+L + QA
Sbjct: 76  EEELDHVIRFKMSDFKILDCVSTGLGGRGDEIVFEALVNNRLSPLYNTKVVLRRLKTAQA 135

Query: 134 QRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWL 193
           QRRG+RAIEVLKKL RRRLMYHSYSMQVHGY+SS  ++G S FTLVHG +H SFSLRHWL
Sbjct: 136 QRRGKRAIEVLKKLARRRLMYHSYSMQVHGYISSLMSNGHSSFTLVHG-HHSSFSLRHWL 194

Query: 194 QQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLA 253
           QQ+DWLPTLEATLALDEESVRKVGD + GGPA SR  RLIR+LMRDLLIGVNYLHSHGLA
Sbjct: 195 QQSDWLPTLEATLALDEESVRKVGDTTTGGPAVSRHSRLIRVLMRDLLIGVNYLHSHGLA 254

Query: 254 HTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNSSPDSNMDRRQMMIAFDMRCVGFM 313
           HTELRLENVHISPVDRH+KVGILGNAA F+E+  ++++P+SN+DRRQMMIAFDMRCVGFM
Sbjct: 255 HTELRLENVHISPVDRHVKVGILGNAAYFHENAGSDNTPESNLDRRQMMIAFDMRCVGFM 314

Query: 314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAG 373
           MAKMVL+ELMDPLIFTKFKSF +KG DPSCLRE+LL+VL    SSGN G QILDRNWGAG
Sbjct: 315 MAKMVLQELMDPLIFTKFKSFFSKGHDPSCLREYLLRVLEHRLSSGNVGLQILDRNWGAG 374

Query: 374 WNLLSLLLATKPSKRISCLDALRHPFLCGPRWRVDPSIDMIRWGLGSSAVRITEEYIYRQ 433
           WNLLSLLLA KPSKRISCL+ALRHPFLCGPRWRV PS ++IRWGLGS+AVRI EEYIY  
Sbjct: 375 WNLLSLLLANKPSKRISCLEALRHPFLCGPRWRVAPSKEIIRWGLGSTAVRIAEEYIYSH 434

Query: 434 PQRARLAYFVELMEMLNPHSKPKNWLEFLPGKWRMLYCTGRHIGLTLRQPPARILVGYVR 493
            QR +L++F+ELMEML PHSKPK+WLE +PGKWR LY TGRHIGLTLRQPP R+L+G V 
Sbjct: 435 SQRGKLSHFIELMEMLTPHSKPKHWLEVIPGKWRFLYSTGRHIGLTLRQPPDRVLIGDVC 494

Query: 494 LTVTRPSKSNTNLSFTSDISFTVMTGREWPHDKTGITGKLQINSLFRLMAGRRLYIKEEK 553
           LTV R +K N  +S TSDI FTVM GR WPHDK G+ GKL   S  R+ AGRRLY+KEE 
Sbjct: 495 LTVARDTKLNNRISLTSDIEFTVMRGRNWPHDKIGVNGKLVGYSSSRIQAGRRLYLKEEN 554

Query: 554 TTPGLFSSQSDAQNSLVQKLSGRKWRKAVPFKDIPSSLSVAKLVSGDIELTMSLGHPLNH 613
           TT         AQ+ L QKLS +KWRK +PF+++PSSL   KLV  DI+LTM L  PL  
Sbjct: 555 TT---------AQHVLSQKLSSQKWRKVIPFEELPSSLPAVKLVPADIDLTMKLDDPLGE 605

Query: 614 NVDAAKNIVQEVRTQIPPEMFDLSKFVCGTYVDSRFLVLRGVNGSALLFTRS 665
           +VDAA+NI+QEVRTQ+PPE+FDLSK +CGTYVDSR L+LR ++GSALLFTRS
Sbjct: 606 DVDAARNIIQEVRTQVPPELFDLSKLICGTYVDSRLLILRSIDGSALLFTRS 657

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281573|dbj|BAJ33652.1| unnamed protein product [Thellungiella halophila]

 Score =  908 bits (2346), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/673 (68%), Positives = 528/673 (78%), Gaps = 15/673 (2%)

Query: 1   MALCGIGLSQTLEGIDKWCLGG-NFSTRLMVHRHFNWKTSARAQRRSSAIQCSSSR---- 55
           MALCG+  +  L  ++       N S  L  +R     T +    +    +CSSS     
Sbjct: 1   MALCGVCSTPNLRSLELLQQSAKNTSIGLKRNRSLWQPTGSVRGAKPVRFRCSSSLKSSS 60

Query: 56  -KVVSEESVQNEASVSVDDESDSGHVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDS 114
             V  +E VQN  SVS DDES   HV++F   DFKILDRVSIG  GRADE+VFEAIV+  
Sbjct: 61  SNVEMDEDVQNSPSVSADDES--AHVLQFKWNDFKILDRVSIGHGGRADELVFEAIVQVP 118

Query: 115 NSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRS 174
           +SPL N  VVLR+L +  AQRRGRRAIEVLKKLVRRRL+YHSYSMQVHGY+S++      
Sbjct: 119 DSPLFNQGVVLRKLNTTHAQRRGRRAIEVLKKLVRRRLLYHSYSMQVHGYISNNLGDDPY 178

Query: 175 LFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR 234
            FTLVHG  HGSFS+RHWLQQ+DWLPTLEATLALDEES R+VGDD+ GGPA SRQLRLIR
Sbjct: 179 SFTLVHG-CHGSFSIRHWLQQSDWLPTLEATLALDEESFRRVGDDTTGGPAVSRQLRLIR 237

Query: 235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNSSPDS 294
           +LMRDLLIGVNYLHSHG+AHTELRLENVHISPVDRHIKVGILGNAADF EDGP+ SS  S
Sbjct: 238 ILMRDLLIGVNYLHSHGIAHTELRLENVHISPVDRHIKVGILGNAADFGEDGPSTSSAYS 297

Query: 295 NMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNR 354
            MDRRQMMIAFDMRCVGFMMAKMVL+ELMDPLIF K KSFL KG DPS LREF +  LN 
Sbjct: 298 TMDRRQMMIAFDMRCVGFMMAKMVLQELMDPLIFAKLKSFLAKGNDPSSLREFFVTTLNT 357

Query: 355 NSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPRWRVDPSIDMI 414
           NS SGNTG QILDRNWGAGW+LLS L+AT+PSKRISCLDAL+HPFLCGPRWRV PS+D+I
Sbjct: 358 NSESGNTGVQILDRNWGAGWHLLSSLIATRPSKRISCLDALKHPFLCGPRWRVAPSMDII 417

Query: 415 RWGLGSSAVRITEEYIYRQPQRARLAYFVELMEMLNPHSKPKNWLEFLPGKWRMLYCTGR 474
           RWGLGS+AVRI+EEYIYR PQR RLA+F+ELMEMLNP  +P  WLE LPGKWR+LY TG+
Sbjct: 418 RWGLGSTAVRISEEYIYRMPQRQRLAHFIELMEMLNPCPQPNCWLELLPGKWRLLYSTGK 477

Query: 475 HIGLTLRQPPARILVGYVRLTVTRPSKS-NTNLSFTSDISFTVMTGREWPHDKTGITGKL 533
           HIGLTLRQP  R L+G V LTVTR S + N +LSFTSDI FT +T ++WPH+KTG TGKL
Sbjct: 478 HIGLTLRQPSTRALIGNVHLTVTRASDANNASLSFTSDIGFTAITSKDWPHNKTGATGKL 537

Query: 534 QINSLFRLMAGRRLYIKEEKTTPGLFS-SQSDAQNSLVQKLSGRKWRKAVPFKDIPSSLS 592
           Q  S FRL+AG+RLY+KEEK   G FS  + DA+  LV+KL  +KW+K VPFK  PSSL 
Sbjct: 538 QTLSQFRLVAGKRLYLKEEKKNIGKFSMGEPDAEEGLVEKLETKKWKKVVPFKKFPSSLP 597

Query: 593 VAKLVSGDIELTMSLGHPLNHNVDAAKNIVQEVRTQIPPEMFDLSKFVCGTYVDSRFLVL 652
           VAKLVSG+IE+TM+    +   VD+  N++ EVR QIP EMFDLSK VCGTY+DSR LVL
Sbjct: 598 VAKLVSGEIEVTMN----MTDRVDSPGNVIGEVRKQIPQEMFDLSKLVCGTYIDSRLLVL 653

Query: 653 RGVNGSALLFTRS 665
           R VNGSALLFTRS
Sbjct: 654 RCVNGSALLFTRS 666

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30696335|ref|NP_851182.1| OBP3-responsive protein 1 [Arabidopsis thaliana] gi|8843774|dbj|BAA97322.1| unnamed protein product [Arabidopsis thaliana] gi|25082900|gb|AAN72012.1| putative protein [Arabidopsis thaliana] gi|30725494|gb|AAP37769.1| At5g53450 [Arabidopsis thaliana] gi|332008972|gb|AED96355.1| OBP3-responsive protein 1 [Arabidopsis thaliana]

 Score =  896 bits (2316), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/671 (67%), Positives = 532/671 (79%), Gaps = 14/671 (2%)

Query: 1   MALCGIGLSQTLEGIDKWCLGGNFSTRLMVHRHFNWKTSARAQRRSSAI-QCSSS-RKVV 58
           MALCG+  +  L  +  +    N S       H  W+  + + R  S I  CSSS R+  
Sbjct: 1   MALCGVCSTPNLPNLQVFRSVRNSSIGYK-RNHSLWQLRSSSFRAKSVIFHCSSSLRQSP 59

Query: 59  SE-ESVQNEASVSVDDESDSGHVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSP 117
           S  E + +  SVS++DES   HV++F   DF+ILDRVSIG  GRADE+VFEAIV+  +SP
Sbjct: 60  SNVEEIDDNPSVSLEDES--AHVMQFKWSDFRILDRVSIGHGGRADELVFEAIVQVPDSP 117

Query: 118 LHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFT 177
           L N  VVLR+L + +AQRRGRRAIEV KKLVRRRL+YHSYSMQVHGY++++ +  +  FT
Sbjct: 118 LFNQGVVLRKLNTTRAQRRGRRAIEVFKKLVRRRLLYHSYSMQVHGYITNNLSDDQYSFT 177

Query: 178 LVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM 237
           LVHG  HGSFS+RHWLQQ+DW+PTLEATLALDEES R+VGDD+ GGPA SRQLRLIR LM
Sbjct: 178 LVHG-CHGSFSIRHWLQQSDWIPTLEATLALDEESFRRVGDDTTGGPAVSRQLRLIRTLM 236

Query: 238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNSSPDSNMD 297
           RD+LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADF  D P+ S+  S MD
Sbjct: 237 RDILIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFNGDVPSTSNAYSTMD 296

Query: 298 RRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSS 357
           RRQMMIAFDMRCVGFMMAKMVL+ELMDPLIF K KSFL KG DPS LREF +  LN NS 
Sbjct: 297 RRQMMIAFDMRCVGFMMAKMVLQELMDPLIFAKLKSFLAKGNDPSSLREFFVTTLNTNSE 356

Query: 358 SGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPRWRVDPSIDMIRWG 417
           SGNTG QILDRNWGAGW+LLSLL+AT+PS+RISCLDAL+HPFLCGPRWRV PS+D+IRWG
Sbjct: 357 SGNTGVQILDRNWGAGWHLLSLLIATRPSERISCLDALKHPFLCGPRWRVAPSMDIIRWG 416

Query: 418 LGSSAVRITEEYIYRQPQRARLAYFVELMEMLNPHSKPKNWLEFLPGKWRMLYCTGRHIG 477
           LGS+AV+I+EEYIYR PQR RLA+F+ LMEMLNP+ KP  WLE LPG+WR+LY TG+HIG
Sbjct: 417 LGSTAVKISEEYIYRMPQRQRLAHFIGLMEMLNPYPKPNCWLELLPGRWRLLYSTGKHIG 476

Query: 478 LTLRQPPARILVGYVRLTVTRPSKS--NTNLSFTSDISFTVMTGREWPHDKTGITGKLQI 535
           LTLRQP  R L+G V LT+TR S+S  NT+LSFTSDI FT +T ++WPH+K G  GKLQ 
Sbjct: 477 LTLRQPSTRALIGNVHLTITRASESINNTSLSFTSDIRFTAITSKDWPHNKIGAAGKLQT 536

Query: 536 NSLFRLMAGRRLYIKEEKTTPGLFS-SQSDAQNSLVQKLSGRKWRKAVPFKDIPSSLSVA 594
            S FRL+AG+RLY+KEEK   G FS  + DA+  L +KL   KW+K VPFK+ PSSL VA
Sbjct: 537 LSQFRLIAGKRLYLKEEKKNIGKFSMGEPDAEEGLAEKLETEKWKKVVPFKEFPSSLPVA 596

Query: 595 KLVSGDIELTMSLGHPLNHNVDAAKNIVQEVRTQIPPEMFDLSKFVCGTYVDSRFLVLRG 654
           KLVSG+IE+TM+    +N ++D+  +++ EVR QIPPEMFDLSK VCGTY+DSR LVLR 
Sbjct: 597 KLVSGEIEVTMN----MNDHIDSPGSVIGEVRKQIPPEMFDLSKLVCGTYIDSRLLVLRC 652

Query: 655 VNGSALLFTRS 665
           VNGSALLFTRS
Sbjct: 653 VNGSALLFTRS 663

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	667
TAIR|locus:2178456	670	ORG1 "OBP3-responsive gene 1"	0.988	0.983	0.638	9.5e-224
TAIR|locus:2205465	562	STN7 "STT7 homolog STN7" [Arab	0.137	0.163	0.291	0.00071

TAIR|locus:2178456 ORG1 "OBP3-responsive gene 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 2160 (765.4 bits), Expect = 9.5e-224, P = 9.5e-224
 Identities = 427/669 (63%), Positives = 504/669 (75%)

Query:     1 MALCGIGLSQTLEGIDKWCLGGNFSTRLMVHRHFNWKTSARAQRRSSAI-QCXXXXXXXX 59
             MALCG+  +  L  +  +    N S       H  W+  + + R  S I  C        
Sbjct:     1 MALCGVCSTPNLPNLQVFRSVRNSSIGYK-RNHSLWQLRSSSFRAKSVIFHCSSSLRQSP 59

Query:    60 XXXXQNEAXXXXXXXXXXGHVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLH 119
                 + +            HV++F   DF+ILDRVSIG  GRADE+VFEAIV+  +SPL 
Sbjct:    60 SNVEEIDDNPSVSLEDESAHVMQFKWSDFRILDRVSIGHGGRADELVFEAIVQVPDSPLF 119

Query:   120 NTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLV 179
             N  VVLR+L + +AQRRGRRAIEV KKLVRRRL+YHSYSMQVHGY++++ +  +  FTLV
Sbjct:   120 NQGVVLRKLNTTRAQRRGRRAIEVFKKLVRRRLLYHSYSMQVHGYITNNLSDDQYSFTLV 179

Query:   180 HGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASXXXXXXXXXXXX 239
             HG  HGSFS+RHWLQQ+DW+PTLEATLALDEES R+VGDD+ GGPA S            
Sbjct:   180 HG-CHGSFSIRHWLQQSDWIPTLEATLALDEESFRRVGDDTTGGPAVSRQLRLIRTLMRD 238

Query:   240 XXIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNSSPDSNMDRR 299
               IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADF  D P+ S+  S MDRR
Sbjct:   239 ILIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFNGDVPSTSNAYSTMDRR 298

Query:   300 QMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSG 359
             QMMIAFDMRCVGFMMAKMVL+ELMDPLIF K KSFL KG DPS LREF +  LN NS SG
Sbjct:   299 QMMIAFDMRCVGFMMAKMVLQELMDPLIFAKLKSFLAKGNDPSSLREFFVTTLNTNSESG 358

Query:   360 NTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPRWRVDPSIDMIRWGLG 419
             NTG QILDRNWGAGW+LLSLL+AT+PS+RISCLDAL+HPFLCGPRWRV PS+D+IRWGLG
Sbjct:   359 NTGVQILDRNWGAGWHLLSLLIATRPSERISCLDALKHPFLCGPRWRVAPSMDIIRWGLG 418

Query:   420 SSAVRITEEYIYRQPQRARLAYFVELMEMLNPHSKPKNWLEFLPGKWRMLYCTGRHIGLT 479
             S+AV+I+EEYIYR PQR RLA+F+ LMEMLNP+ KP  WLE LPG+WR+LY TG+HIGLT
Sbjct:   419 STAVKISEEYIYRMPQRQRLAHFIGLMEMLNPYPKPNCWLELLPGRWRLLYSTGKHIGLT 478

Query:   480 LRQPPARILVGYVRLTVTRPSKS--NTNLSFTSDISFTVMTGREWPHDKTGITGKLQINS 537
             LRQP  R L+G V LT+TR S+S  NT+LSFTSDI FT +T ++WPH+K G  GKLQ  S
Sbjct:   479 LRQPSTRALIGNVHLTITRASESINNTSLSFTSDIRFTAITSKDWPHNKIGAAGKLQTLS 538

Query:   538 LFRLMAGRRLYIKEEKTTPGLFS-SQSDAQNSLVQKLSGRKWRKAVPFKDIPSSLSVAKL 596
              FRL+AG+RLY+KEEK   G FS  + DA+  L +KL   KW+K VPFK+ PSSL VAKL
Sbjct:   539 QFRLIAGKRLYLKEEKKNIGKFSMGEPDAEEGLAEKLETEKWKKVVPFKEFPSSLPVAKL 598

Query:   597 VSGDIELTMSLGHPLNHNVDAAKNIVQEVRTQIPPEMFDLSKFVCGTYVDSRFLVLRGVN 656
             VSG+IE+TM++    N ++D+  +++ EVR QIPPEMFDLSK VCGTY+DSR LVLR VN
Sbjct:   599 VSGEIEVTMNM----NDHIDSPGSVIGEVRKQIPPEMFDLSKLVCGTYIDSRLLVLRCVN 654

Query:   657 GSALLFTRS 665
             GSALLFTRS
Sbjct:   655 GSALLFTRS 663

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2205465 STN7 "STT7 homolog STN7" [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 0.00071, Sum P(2) = 0.00071
 Identities = 28/96 (29%), Positives = 46/96 (47%)

Query:   305 FDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTK-GIDPSCLREFLLQVLNRNSSSGNTGF 363
             FD+  +G +  +M    L       +F   L +   D +  R+    V  R S+    GF
Sbjct:   359 FDIYSIGLIFLQMAFPSLRSDSNLIQFNRQLKRCDYDLTAWRKL---VEPRASADLRRGF 415

Query:   364 QILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPF 399
             +++D + G GW LL+ ++  K  +RIS   AL HP+
Sbjct:   416 ELVDLDGGIGWELLTSMVRYKARQRISAKAALAHPY 451

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0042548 "regulation of photosynthesis, light reaction" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IEP

GO:0015996 "chlorophyll catabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	667
PLN03225	566	PLN03225, PLN03225, Serine/threonine-protein kinas	4e-13
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	3e-08
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	2e-06
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	2e-06
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	5e-06
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	9e-06
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	9e-06
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	2e-05
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	3e-05
PLN03224	507	PLN03224, PLN03224, probable serine/threonine prot	5e-05
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	6e-05
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	1e-04
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	1e-04
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	2e-04
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	2e-04
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	3e-04
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	5e-04
pfam04755	196	pfam04755, PAP_fibrillin, PAP_fibrillin	0.001
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	0.001
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	0.001
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	0.001
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	0.002
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	0.004

>gnl|CDD|215638 PLN03225, PLN03225, Serine/threonine-protein kinase SNT7; Provisional

 Score = 72.1 bits (177), Expect = 4e-13
 Identities = 70/277 (25%), Positives = 115/277 (41%), Gaps = 51/277 (18%)

Query: 161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDS 220
           V+G++   ++     + LV  +Y G  +L   +Q  ++   +E  L      + KV D  
Sbjct: 195 VYGFLEPVSSKKEDEYWLVW-RYEGESTLADLMQSKEFPYNVEPYL------LGKVQDLP 247

Query: 221 IGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAA 280
            G     R+ ++I+ +MR +L  ++ LHS G+ H +++ +N+  S      K+  LG AA
Sbjct: 248 KG---LERENKIIQTIMRQILFALDGLHSTGIVHRDVKPQNIIFSEGSGSFKIIDLGAAA 304

Query: 281 D-----------FYEDGPNNSSPDSNMDRRQMMIA---------------------FDMR 308
           D           F  D P  ++P+  +   Q   A                     FD+ 
Sbjct: 305 DLRVGINYIPKEFLLD-PRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIY 363

Query: 309 CVGFMMAKMVLRELM--DPLIFTKFKSFLTK-GIDPSCLREFLLQVLNRNSSSGNTGFQI 365
             G +  +M    L     LI  +F   L +   D    R+    V  R S     GF++
Sbjct: 364 SAGLIFLQMAFPNLRSDSNLI--QFNRQLKRNDYDLVAWRK---LVEPRASPDLRRGFEV 418

Query: 366 LDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCG 402
           LD + GAGW LL  ++  K  +RIS   AL HP+   
Sbjct: 419 LDLDGGAGWELLKSMMRFKGRQRISAKAALAHPYFDR 455

Length = 566

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 29/179 (16%), Positives = 66/179 (36%), Gaps = 25/179 (13%)

Query: 231 RLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNS 290
              + +   +L G+ YLHS+G+ H +L+ EN+ +      +K+   G A    +   + +
Sbjct: 98  DEAKKIALQILRGLEYLHSNGIIHRDLKPENILLDENG-VVKIADFGLAKKLLKSSSSLT 156

Query: 291 S---------PDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDP 341
           +         P+  +         D+  +G ++ +++  +      F         G + 
Sbjct: 157 TFVGTPWYMAPEVLLGGNGYGPKVDVWSLGVILYELLTGK----PPF--------SGENI 204

Query: 342 SCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFL 400
               + + ++L                      +L+   L   PSKR +  + L+HP+ 
Sbjct: 205 LDQLQLIRRILGPPLEF---DEPKWSSGSEEAKDLIKKCLNKDPSKRPTAEEILQHPWF 260

Length = 260

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 49.8 bits (120), Expect = 2e-06
 Identities = 53/214 (24%), Positives = 79/214 (36%), Gaps = 69/214 (32%)

Query: 229 QLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPN 288
              LI+ +M  LL G+ Y HSH + H +L+ +N+ I+  D  +K+   G A  F      
Sbjct: 96  SPNLIKSIMYQLLRGLAYCHSHRILHRDLKPQNILIN-RDGVLKLADFGLARAF------ 148

Query: 289 NSSPDSNMDR----------------RQMMIAFDMRCVGFMMAKMVLRELMDPL------ 326
              P                      +    A D+  VG + A+M+  +   PL      
Sbjct: 149 -GIPLRTYTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGK---PLFPGDSE 204

Query: 327 ------IF--------------TKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQIL 366
                 IF              TK   +  K   P    + L +VL R    G      +
Sbjct: 205 IDQLFKIFQILGTPTEESWPGVTKLPDY--KPTFPKFPPKDLEKVLPRLDPEG------I 256

Query: 367 DRNWGAGWNLLSLLLATKPSKRISCLDALRHPFL 400
           D        LLS +L   P+KRIS  +AL+HP+ 
Sbjct: 257 D--------LLSKMLQYNPAKRISAKEALKHPYF 282

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query: 230 LRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNN 289
              I  ++  +L G+ YLHS+G+ H +L+ EN+ +   +  +K+   G +     D    
Sbjct: 91  EDEILRILLQILEGLEYLHSNGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLL 150

Query: 290 SS 291
            +
Sbjct: 151 KT 152

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 48.9 bits (117), Expect = 5e-06
 Identities = 49/202 (24%), Positives = 77/202 (38%), Gaps = 43/202 (21%)

Query: 233 IRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRH--IKVGILGNAADFYEDGPNNS 290
           I+  M  LL G+NYLH + + H +++  N+ I   D    +K+   G A  +    PN  
Sbjct: 117 IKCYMLQLLEGINYLHENHILHRDIKAANILI---DNQGILKIADFGLARPYDGPPPNPK 173

Query: 291 SPDSNMDR--------------------RQMMIAFDMRCVGFMMAKMVLRELMDP----- 325
                  R                    R+   A D+  +G + A+M  R  +       
Sbjct: 174 GGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDI 233

Query: 326 ----LIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGA----GWNLL 377
               LIF    +  T+   P      L      +S +       L+  +G     G +LL
Sbjct: 234 DQLHLIFKLCGT-PTEETWP--GWRSLPGCEGVHSFTNYPR--TLEERFGKLGPEGLDLL 288

Query: 378 SLLLATKPSKRISCLDALRHPF 399
           S LL+  P KR++  DAL HP+
Sbjct: 289 SKLLSLDPYKRLTASDALEHPY 310

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 48.2 bits (113), Expect = 9e-06
 Identities = 35/221 (15%), Positives = 70/221 (31%), Gaps = 26/221 (11%)

Query: 229 QLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKV---GILGNAADFYED 285
                  ++  +L  + YLHS G+ H +++ EN+ +    R +K+   G+     D    
Sbjct: 99  SESEALFILAQILSALEYLHSKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGST 158

Query: 286 GPNNSSPDSN------MDRRQMMIAF--------DMRCVGFMMAKMVLRELMDPLIFTKF 331
               + P ++      M    ++           D+  +G  + +++         F   
Sbjct: 159 SSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGL----PPFEGE 214

Query: 332 KSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC 391
           K+          + E     L    S  N              +LL  LLA  P  R+S 
Sbjct: 215 KNSSATSQTLKIILELPTPSLASPLSPSNPELISKAA-----SDLLKKLLAKDPKNRLSS 269

Query: 392 LDALRHPFLCGPRWRVDPSIDMIRWGLGSSAVRITEEYIYR 432
              L H  L   + +     D+++    +         +  
Sbjct: 270 SSDLSHDLLAHLKLKESDLSDLLKPDDSAPLRLSLPPSLEA 310

Length = 384

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 47.7 bits (114), Expect = 9e-06
 Identities = 53/197 (26%), Positives = 78/197 (39%), Gaps = 40/197 (20%)

Query: 232 LIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNS- 290
           LI+  +  LL G+ + HSHG+ H +L+ EN+ I+     +K+   G A  F       + 
Sbjct: 99  LIKSYLYQLLQGLAFCHSHGILHRDLKPENLLINTEGV-LKLADFGLARSFGSPVRPYTH 157

Query: 291 --------SPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTK------FKSFLT 336
                   +P+  +  +      D+  VG + A+++ R    PL   K      FK F T
Sbjct: 158 YVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRR---PLFPGKSEIDQLFKIFRT 214

Query: 337 KGI-DPSCLREFLLQVLNRNSS------------SGNTGFQILDRNWGAGWNLLSLLLAT 383
            G  DP    +F     N   S              N   Q LD        LLS +L  
Sbjct: 215 LGTPDPEVWPKFTSLARNYKFSFPKKAGMPLPKLFPNASPQALD--------LLSQMLHY 266

Query: 384 KPSKRISCLDALRHPFL 400
            P KRI+   AL HP+ 
Sbjct: 267 DPHKRITAEQALAHPYF 283

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 51/212 (24%), Positives = 85/212 (40%), Gaps = 35/212 (16%)

Query: 213 VRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIK 272
           ++K  D +  GP      + I+  M  LL GV + H HG+ H +L+ +N+ +      +K
Sbjct: 92  LKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHRDLKPQNLLVDKQKGLLK 151

Query: 273 VGILGNAADFYEDGPNNS-----------SPDSNMDRRQMMIAFDMRCVGFMMAKMVLR- 320
           +  LG    F    P  S           +P+  +         D+  VG + A+M  + 
Sbjct: 152 IADLGLGRAF--SIPVKSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQ 209

Query: 321 -------ELMDPLIFTKFKSFLTKGIDP--SCLREF----LLQVLNRNSSSGNTGFQILD 367
                  EL   L   K     T+ + P  S LR++      +  + + +  +   + LD
Sbjct: 210 PLFPGDSELQQLLHIFKLLGTPTEQVWPGVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLD 269

Query: 368 RNWGAGWNLLSLLLATKPSKRISCLDALRHPF 399
                   LL  +L   P+KRIS   AL HP+
Sbjct: 270 --------LLQKMLRYDPAKRISAKAALTHPY 293

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 55/209 (26%), Positives = 83/209 (39%), Gaps = 41/209 (19%)

Query: 219 DSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRH--IKVGIL 276
           DS   P       LI+  +  LL G+ Y HSH + H +L+ +N+ I   DR   +K+   
Sbjct: 89  DSS--PLTGLDPPLIKSYLYQLLQGIAYCHSHRVLHRDLKPQNLLI---DREGALKLADF 143

Query: 277 GNAADF---------------YEDGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRE 321
           G A  F               Y       +P+  +  RQ     D+  +G + A+MV R 
Sbjct: 144 GLARAFGVPVRTYTHEVVTLWYR------APEILLGSRQYSTPVDIWSIGCIFAEMVNRR 197

Query: 322 LM---DPLIFTKFKSFLTKGI-------DPSCLREFLLQVLNRNSSSGNTGFQILDRNWG 371
            +   D  I   F+ F T G          + L ++            +     LD    
Sbjct: 198 PLFPGDSEIDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPKWARQDLSKVVPNLDE--- 254

Query: 372 AGWNLLSLLLATKPSKRISCLDALRHPFL 400
            G +LLS +L   P+KRIS   AL+HP+ 
Sbjct: 255 DGLDLLSKMLVYDPAKRISAKAALQHPYF 283

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|178763 PLN03224, PLN03224, probable serine/threonine protein kinase; Provisional

 Score = 45.8 bits (108), Expect = 5e-05
 Identities = 55/223 (24%), Positives = 90/223 (40%), Gaps = 50/223 (22%)

Query: 214 RKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKV 273
           +K+ D+    P   R + +I+ +MR +L G+  LH  G+ H +++ EN+ ++ VD  +K+
Sbjct: 295 KKIPDNM---PQDKRDINVIKGVMRQVLTGLRKLHRIGIVHRDIKPENLLVT-VDGQVKI 350

Query: 274 GILGNAADFYED----------GPNNSSPDSNMDRRQMMIA------------------- 304
              G A D               P  S P+  +  +    A                   
Sbjct: 351 IDFGAAVDMCTGINFNPLYGMLDPRYSPPEELVMPQSCPRAPAPAMAALLSPFAWLYGRP 410

Query: 305 --FDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLN--RNSSSGN 360
             FD    G ++ +M + EL  P+     + F T+      LR++    LN  R      
Sbjct: 411 DLFDSYTAGVLLMQMCVPELR-PV--ANIRLFNTE------LRQY-DNDLNRWRMYKGQK 460

Query: 361 TGFQILDRNWGAGWNLLSLLLATKPSK---RISCLDALRHPFL 400
             F +LDRN  AGW+L   L+  +      R+S   AL H F 
Sbjct: 461 YDFSLLDRNKEAGWDLACKLITKRDQANRGRLSVGQALSHRFF 503

Length = 507

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 44.9 bits (107), Expect = 6e-05
 Identities = 48/197 (24%), Positives = 78/197 (39%), Gaps = 42/197 (21%)

Query: 233 IRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNSSP 292
           ++ LM  LL GV +LH + + H +L+  N+ ++     +K+   G A ++        SP
Sbjct: 108 VKCLMLQLLSGVAHLHDNWILHRDLKTSNLLLNNRGI-LKICDFGLAREY-------GSP 159

Query: 293 DSNMDR----------------RQMMIAFDMRCVGFMMAKMVLRELMDPL------IFTK 330
                +                ++   A DM  VG + A+++ +    PL      I   
Sbjct: 160 LKPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTK---KPLFPGKSEIDQL 216

Query: 331 FKSFLTKG-----IDPSCLREFLLQVLNRNSSSGNT---GFQILDRNWGAGWNLLSLLLA 382
            K F   G     I P        +         N     F  L  +   G++LL+ LL 
Sbjct: 217 NKIFKLLGTPTEKIWPGFSELPGAKKKTFTKYPYNQLRKKFPALSLS-DNGFDLLNRLLT 275

Query: 383 TKPSKRISCLDALRHPF 399
             P+KRIS  DAL+HP+
Sbjct: 276 YDPAKRISAEDALKHPY 292

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 27/197 (13%)

Query: 224 PAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFY 283
           P +   L LI+  +  LL G+ + HSH + H +L+ +N+ I+  +  IK+   G A  F 
Sbjct: 93  PLSGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLIN-TEGAIKLADFGLARAF- 150

Query: 284 EDGPNNS-----------SPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELM---DPLIFT 329
              P  +           +P+  +  +    A D+  +G + A+MV R  +   D  I  
Sbjct: 151 -GVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQ 209

Query: 330 KFKSFLTKGIDPSCLREFLLQVLNRNSS-------SGNTGFQILDRNWGAGWNLLSLLLA 382
            F+ F T G     +   +  + +   S         +     LD +   G +LLS +L 
Sbjct: 210 LFRIFRTLGTPDEVVWPGVTSLPDYKPSFPKWARQDFSKVVPPLDED---GRDLLSQMLH 266

Query: 383 TKPSKRISCLDALRHPF 399
             P+KRIS   AL HPF
Sbjct: 267 YDPNKRISAKAALAHPF 283

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 231 RLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNS 290
              R  +R +L  + YLHS G+ H +L+ EN+ +   D H+K+   G A          +
Sbjct: 97  DEARFYLRQILSALEYLHSKGIVHRDLKPENILLDE-DGHVKLADFGLARQLDPGEKLTT 155

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 56/227 (24%), Positives = 87/227 (38%), Gaps = 70/227 (30%)

Query: 233 IRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNSSP 292
           IR  +  LL G+ Y+HS  + H +L+  N+ ++  D  +++G  G A      G ++S  
Sbjct: 109 IRYFLYQLLRGLKYIHSANVIHRDLKPSNLLVNE-DCELRIGDFGMAR-----GLSSSPT 162

Query: 293 DSNMDRRQ-----------MMI-------AFDMRCVGFMMAKMVLRELMDP--------- 325
           +      +           +++       A DM  VG + A+M+ R  + P         
Sbjct: 163 EHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLK 222

Query: 326 LIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSS-GNTGFQILDRNWGAGW---------- 374
           LI +   S       PS       +VLNR  S       Q L R     W          
Sbjct: 223 LILSVLGS-------PS------EEVLNRIGSDRVRKYIQNLPRKQPVPWSKIFPKASPE 269

Query: 375 --NLLSLLLATKPSKRISCLDALRHPFL-----------CGPRWRVD 408
             +LLS +L   P +RI+   AL+HPFL           C P +  D
Sbjct: 270 ALDLLSQMLQFDPEERITVEQALQHPFLAQYHDPDDEPTCPPPFDFD 316

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 33/200 (16%)

Query: 233 IRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNS-- 290
           +++ +  +L G+ YLHS G+ H +++  N+ ++  +  +K+   G A    E+ P+ S  
Sbjct: 105 VKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNS-NCVLKICDFGLAR--VEE-PDESKH 160

Query: 291 -----------SPDSNMDRRQMMIAFDMRCVGFMMAKMVLR-------------ELMDPL 326
                      +P+  M  R    A D+  VG + A+++ R             +L+  L
Sbjct: 161 MTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQSPIQQLDLITDL 220

Query: 327 IFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS 386
           + T     +    + +  R  +L+  ++  S     + +  +      +LL  +L   P 
Sbjct: 221 LGTPSLEAMRSACEGA--RAHILRGPHKPPSL-PVLYTLSSQATHEAVHLLCRMLVFDPD 277

Query: 387 KRISCLDALRHPFLCGPRWR 406
           KRIS  DAL HP+L   R R
Sbjct: 278 KRISAADALAHPYLDEGRLR 297

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 42.9 bits (102), Expect = 3e-04
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 7/51 (13%)

Query: 232 LIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADF 282
           +IR   R +L G+ YLHS+G+ H +++  N+ +   D  +K+      ADF
Sbjct: 102 VIRKYTRQILEGLAYLHSNGIVHRDIKGANILVDS-DGVVKL------ADF 145

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 51/201 (25%), Positives = 80/201 (39%), Gaps = 34/201 (16%)

Query: 224 PAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADF- 282
           P  ++  RLI+  +  +L G+ Y HSH + H +L+ +N+ I      +K+   G A  F 
Sbjct: 95  PDFAKNPRLIKTYLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFG 154

Query: 283 --------------YEDGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELM---DP 325
                         Y       +P+  +  R      D+  VG + A+MV ++ +   D 
Sbjct: 155 IPVRTFTHEVVTLWYR------APEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDS 208

Query: 326 LIFTKFKSFLTKGID-----PSC--LREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLS 378
            I   FK F   G       P    L ++             T    L+    AG +LLS
Sbjct: 209 EIDELFKIFRILGTPNEETWPGVTSLPDYKSAFPKWPPKDLATVVPTLEP---AGVDLLS 265

Query: 379 LLLATKPSKRISCLDALRHPF 399
            +L   PSKRI+   AL H +
Sbjct: 266 KMLRLDPSKRITARAALEHEY 286

Length = 294

>gnl|CDD|218245 pfam04755, PAP_fibrillin, PAP_fibrillin

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 34/155 (21%), Positives = 62/155 (40%), Gaps = 19/155 (12%)

Query: 435 QRARLAYFVELMEMLNPHSKPKNWLEFLPGKWRMLYCTGRHIGLTLRQPPARILVGYVRL 494
            RA +   V  +E LNP   P   L+ L GKWR+LY T +     L    AR  +  +++
Sbjct: 24  DRAEIESAVTQLEALNPTPAPTESLDLLNGKWRLLYTTSK----ELLPLLARGRLPLLKV 79

Query: 495 -TVTRPSKSNTNLSFTSDISFTVMTGREWPHDKTGITGKLQINSLFRLMAGRRLYIKEEK 553
             + +    N NL+  + ++F+               G   + + F + + +R+ I+ E+
Sbjct: 80  GQIYQTIDVN-NLTVYNSVTFS----------GPLAEGSFSVRAKFEIRSPKRVQIRFER 128

Query: 554 TTPGLFSSQSDAQNSLVQKLSGRK---WRKAVPFK 585
              G       +   L    S  +    +  +PF 
Sbjct: 129 GVLGTPQLLKGSLTPLQDTASNIRGISSQLPLPFP 163

This family identifies a conserved region found in a number of plastid lipid-associated proteins (PAPs), and in a number of putative fibrillin proteins. Length = 196

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 46/200 (23%), Positives = 77/200 (38%), Gaps = 44/200 (22%)

Query: 233 IRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADF---------Y 283
           I+ +M+ LL G+ Y+H + + H +++  N+ I+      K GIL   ADF          
Sbjct: 121 IKKVMKMLLNGLYYIHRNKILHRDMKAANILIT------KDGIL-KLADFGLARAFSLSK 173

Query: 284 EDGPNNSS----------PDSNMDRRQMMIAFDMRCVGFMMAKMVLRE-LMD-------- 324
              PN  +          P+  +  R      DM   G +MA+M  R  +M         
Sbjct: 174 NSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQHQL 233

Query: 325 PLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWG-----AGWNLLSL 379
            LI ++    +T  + P   +  L + +           ++ +R           +L+  
Sbjct: 234 TLI-SQLCGSITPEVWPGVDKLELFKKMELPQ---GQKRKVKERLKPYVKDPHALDLIDK 289

Query: 380 LLATKPSKRISCLDALRHPF 399
           LL   P+KRI    AL H F
Sbjct: 290 LLVLDPAKRIDADTALNHDF 309

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 7/50 (14%)

Query: 233 IRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADF 282
           I+ LMR LL GV++LHSH + H +L+ +N+ ++  D  +K+      ADF
Sbjct: 109 IKDLMRQLLRGVDFLHSHRIVHRDLKPQNILVTS-DGQVKI------ADF 151

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 45/191 (23%), Positives = 70/191 (36%), Gaps = 26/191 (13%)

Query: 233 IRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNA----ADFYEDGPN 288
            RL M  LL G+ Y+HS  + H +L+  NV I+  D  +K+G  G A      +   G  
Sbjct: 116 ARLFMYQLLRGLKYIHSANVLHRDLKPANVFINTEDLVLKIGDFGLARIVDPHYSHKGYL 175

Query: 289 NS--------SPDSNMDRRQMMIAFDMRCVGFMMAKMVL----------RELMDPLIFTK 330
           +         SP   +       A DM   G + A+M+            E M  LI   
Sbjct: 176 SEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHELEQMQ-LILES 234

Query: 331 FKSFLTKGIDPS-CLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI 389
               + +  D +  L      V N           +L        + L  +L   P  R+
Sbjct: 235 VP--VVREEDRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTFNPMDRL 292

Query: 390 SCLDALRHPFL 400
           +  +AL HP++
Sbjct: 293 TAEEALMHPYM 303

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 3/36 (8%)

Query: 375 NLLSLLLATKPSKRISCLDALRHPFLCGPRWRVDPS 410
           +LL  LLA  P+KRIS  +AL HP+L    W  DP 
Sbjct: 270 DLLEKLLAFDPTKRISVEEALEHPYL--AIWH-DPD 302

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 229 QLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPN 288
               ++  MR LL GV Y+H++G+ H +L+  N+ IS  D  +K+   G A  F E+ P 
Sbjct: 97  PEAQVKSYMRMLLKGVAYMHANGIMHRDLKPANLLISA-DGVLKIADFGLARLFSEEEPR 155

Query: 289 NSSP 292
             S 
Sbjct: 156 LYSH 159

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	667
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
KOG0610	459	consensus Putative serine/threonine protein kinase	100.0
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
PTZ00284	467	protein kinase; Provisional	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
KOG4717	864	consensus Serine/threonine protein kinase [Signal	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	100.0
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	100.0
KOG0596	677	consensus Dual specificity; serine/threonine and t	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	100.0
KOG0589	426	consensus Serine/threonine protein kinase [General	100.0
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
PHA03207	392	serine/threonine kinase US3; Provisional	100.0
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	100.0
KOG0607	463	consensus MAP kinase-interacting kinase and relate	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	100.0
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
KOG0690	516	consensus Serine/threonine protein kinase [Signal	100.0
PHA03209	357	serine/threonine kinase US3; Provisional	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	100.0
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	100.0
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	100.0
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	100.0
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	100.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	100.0
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	100.0
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	100.0
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	100.0
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	100.0
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	100.0
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	100.0
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	100.0
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	100.0
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	100.0
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	100.0
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
KOG1989	738	consensus ARK protein kinase family [Signal transd	100.0
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	100.0
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	100.0
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	100.0
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	100.0
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	100.0
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	100.0
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
KOG0584	632	consensus Serine/threonine protein kinase [General	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	100.0
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	100.0
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	100.0
PLN00009	294	cyclin-dependent kinase A; Provisional	100.0
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	100.0
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	100.0
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	100.0
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	100.0
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	100.0
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	100.0
PHA03211	461	serine/threonine kinase US3; Provisional	100.0
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	100.0
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	100.0
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	100.0
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	100.0
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	100.0
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	100.0
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	100.0
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	100.0
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	100.0
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	100.0
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	100.0
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	100.0
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	100.0
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	100.0
PTZ00266	1021	NIMA-related protein kinase; Provisional	100.0
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	100.0
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	100.0
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	100.0
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	100.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	100.0
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	100.0
PHA03210	501	serine/threonine kinase US3; Provisional	100.0
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	100.0
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	100.0
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	100.0
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	100.0
KOG0586	596	consensus Serine/threonine protein kinase [General	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	100.0
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	100.0
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	100.0
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	100.0
PTZ00024	335	cyclin-dependent protein kinase; Provisional	100.0
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	100.0
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	100.0
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	100.0
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	100.0
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	100.0
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	100.0
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	100.0
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	100.0
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	100.0
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	100.0
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	100.0
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	100.0
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	100.0
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	100.0
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	100.0
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	100.0
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
KOG0577	948	consensus Serine/threonine protein kinase [Signal	100.0
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	100.0
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	100.0
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	100.0
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	100.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	100.0
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	100.0
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	100.0
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	100.0
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	100.0
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	100.0
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	100.0
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	100.0
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	100.0
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	100.0
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	100.0
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	100.0
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	100.0
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	100.0
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	100.0
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	100.0
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	100.0
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	100.0
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	100.0
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	100.0
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	100.0
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	100.0
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	100.0
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	100.0
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	100.0
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	100.0
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	100.0
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	100.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	100.0
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	100.0
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	100.0
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	100.0
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	100.0
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	100.0
KOG1290	590	consensus Serine/threonine protein kinase [Signal	100.0
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	100.0
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	100.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	100.0
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	100.0
KOG0696	683	consensus Serine/threonine protein kinase [Signal	100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	100.0
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	100.0
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	100.0
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	100.0
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	100.0
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	100.0
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	100.0
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	100.0
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	100.0
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	100.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	100.0
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	100.0
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	100.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	100.0
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	100.0
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	100.0
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	100.0
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	100.0
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	100.0
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	100.0
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	100.0
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	100.0
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	100.0
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	100.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	100.0
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	100.0
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	100.0
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	100.0
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	100.0
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	100.0
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	100.0
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	100.0
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	100.0
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	100.0
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	100.0
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	100.0
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	100.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	100.0
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	100.0
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	100.0
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	100.0
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	100.0
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	100.0
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	100.0
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	100.0
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	100.0
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	100.0
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	100.0
KOG0695	593	consensus Serine/threonine protein kinase [Signal	100.0
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	100.0
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	100.0
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	100.0
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	100.0
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	100.0
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	100.0
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	100.0
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	100.0
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	100.0
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	100.0
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	100.0
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	100.0
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	100.0
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	100.0
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	100.0
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	100.0
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	100.0
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	100.0
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	100.0
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	100.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	100.0
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	100.0
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	100.0
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	100.0
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	100.0
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	100.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	100.0
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	100.0
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	100.0
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	100.0
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	100.0
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	100.0
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	100.0
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	100.0
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	100.0
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	100.0
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	100.0
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	100.0
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	100.0
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	100.0
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	100.0
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	100.0
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	100.0
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	100.0
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	100.0
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	100.0
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	100.0
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	100.0
PLN03224	507	probable serine/threonine protein kinase; Provisio	100.0
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	100.0
PHA02882	294	putative serine/threonine kinase; Provisional	100.0
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	100.0
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
KOG1027	903	consensus Serine/threonine protein kinase and endo	100.0
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	100.0
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	100.0
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	100.0
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	100.0
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.98
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.98
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.97
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.97
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.97
KOG1152	772	consensus Signal transduction serine/threonine kin	99.97
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.97
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.96
KOG3653	534	consensus Transforming growth factor beta/activin	99.96
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.96
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.95
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.95
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.94
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.94
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.93
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.91
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.9
PRK09188	365	serine/threonine protein kinase; Provisional	99.89
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.88
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.88
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.87
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.85
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.85
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.84
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.84
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.83
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.83
PRK12274	218	serine/threonine protein kinase; Provisional	99.82
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.82
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.81
PRK10345	210	hypothetical protein; Provisional	99.8
smart00090	237	RIO RIO-like kinase.	99.74
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.72
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.71
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.69
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.69
PRK14879	211	serine/threonine protein kinase; Provisional	99.68
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.67
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.67
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.65
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.64
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.58
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.58
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.54
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.49
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.48
KOG1266	458	consensus Protein kinase [Signal transduction mech	99.39
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.34
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.3
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.29
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.28
KOG1243	690	consensus Protein kinase [General function predict	99.2
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.19
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	99.04
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	99.02
KOG3087	229	consensus Serine/threonine protein kinase [General	98.94
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.85
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.78
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.78
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.74
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.56
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.49
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	98.34
PRK09902	216	hypothetical protein; Provisional	98.26
COG4248	637	Uncharacterized protein with protein kinase and he	98.25
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.21
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	98.16
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	98.16
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	98.05
PF01636	239	APH: Phosphotransferase enzyme family This family	97.99
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	97.99
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	97.87
KOG0576	829	consensus Mitogen-activated protein kinase kinase	97.79
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	97.73
KOG1235	538	consensus Predicted unusual protein kinase [Genera	97.69
PF04755	198	PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843	97.68
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	97.68
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	97.67
PLN02876	822	acyl-CoA dehydrogenase	97.57
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	97.53
PRK09550	401	mtnK methylthioribose kinase; Reviewed	97.5
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	97.42
KOG1826	2724	consensus Ras GTPase activating protein RasGAP/neu	97.39
KOG2268	465	consensus Serine/threonine protein kinase [Signal	97.37
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	97.31
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	97.17
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	97.04
PRK10593	297	hypothetical protein; Provisional	97.04
KOG2270	520	consensus Serine/threonine protein kinase involved	96.94
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	96.93
PRK05231	319	homoserine kinase; Provisional	96.79
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	96.77
KOG1093	725	consensus Predicted protein kinase (contains TBC a	96.62
PRK12396	409	5-methylribose kinase; Reviewed	96.36
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	96.3
PLN02236	344	choline kinase	96.27
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	96.18
PRK06148	1013	hypothetical protein; Provisional	95.85
PLN02756	418	S-methyl-5-thioribose kinase	95.32
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	94.83
PRK11768	325	serine/threonine protein kinase; Provisional	94.51
KOG1236	565	consensus Predicted unusual protein kinase [Genera	93.98
COG2334	331	Putative homoserine kinase type II (protein kinase	93.56
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	93.29
PRK06149	972	hypothetical protein; Provisional	92.85
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	92.6
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	92.44
PTZ00384	383	choline kinase; Provisional	92.29
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	91.73
PTZ00296	442	choline kinase; Provisional	89.06

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.1e-52  Score=436.97  Aligned_cols=254  Identities=24%  Similarity=0.291  Sum_probs=210.3

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh---------HHHHHHHHHHHHHHhhccCCC
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA---------QRRGRRAIEVLKKLVRRRLMY  154 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~---------~~~~~rEi~iL~~L~~~~~~~  154 (667)
                      ..+.|.+.+.||+|+||    .|-+|..+.     +|+.||||++++...         ...+.+|++||++|.      
T Consensus       170 ~~d~yii~~~LGsGafg----~Vkla~e~~-----tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~------  234 (475)
T KOG0615|consen  170 FNDYYIISKTLGSGAFG----LVKLAYEKK-----TGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLS------  234 (475)
T ss_pred             hcceeEeeeeecCCcee----EEEEEEEcc-----cCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcC------
Confidence            45789999999999999    999999998     899999999986321         233579999999994      


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      |||||+++++|.     ..++.||||| |++||+|++.+..++         .+.|.                    .-+
T Consensus       235 HP~IV~~~d~f~-----~~ds~YmVlE-~v~GGeLfd~vv~nk---------~l~ed--------------------~~K  279 (475)
T KOG0615|consen  235 HPNIVRIKDFFE-----VPDSSYMVLE-YVEGGELFDKVVANK---------YLRED--------------------LGK  279 (475)
T ss_pred             CCCEEEEeeeee-----cCCceEEEEE-EecCccHHHHHHhcc---------ccccc--------------------hhH
Confidence            999999999999     7788999999 999999999999876         45543                    347


Q ss_pred             HHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCC--CCeEEEeeecccccccCCC--------CCCCCcccccCCC--CCC
Q 005958          235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPV--DRHIKVGILGNAADFYEDG--------PNNSSPDSNMDRR--QMM  302 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~--~~~vKL~DFGlA~~~~~~~--------~~Y~APE~l~~~~--~ys  302 (667)
                      .+++||+.||.|||++||+||||||+|||++.+  +..+||+|||+|+......        |.|.|||++.+.+  .|.
T Consensus       280 ~~f~Qll~avkYLH~~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~~g~~sfm~TlCGTpsYvAPEVl~~kg~~~~~  359 (475)
T KOG0615|consen  280 LLFKQLLTAVKYLHSQGIIHRDIKPENILLSNDAEDCLLKITDFGLAKVSGEGSFMKTLCGTPSYVAPEVLASKGVEYYP  359 (475)
T ss_pred             HHHHHHHHHHHHHHHcCcccccCCcceEEeccCCcceEEEecccchhhccccceehhhhcCCccccChhheecCCeeccc
Confidence            799999999999999999999999999999872  3689999999999886543        8999999876443  455


Q ss_pred             chhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhh
Q 005958          303 IAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLA  382 (667)
Q Consensus       303 ~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~  382 (667)
                      .++||||+||+||-+++|.+||.+..+           +..+.+.   +..+...   ...+.+..+|+++++||.+||.
T Consensus       360 ~kVDiWSlGcvLfvcLsG~pPFS~~~~-----------~~sl~eQ---I~~G~y~---f~p~~w~~Iseea~dlI~~mL~  422 (475)
T KOG0615|consen  360 SKVDIWSLGCVLFVCLSGYPPFSEEYT-----------DPSLKEQ---ILKGRYA---FGPLQWDRISEEALDLINWMLV  422 (475)
T ss_pred             chheeeeccceEEEEeccCCCcccccC-----------CccHHHH---HhcCccc---ccChhhhhhhHHHHHHHHHhhE
Confidence            699999999999999999999974321           1112222   2222111   1224567889999999999999


Q ss_pred             cCcCCCCCHHHHHcCCCCCCCC
Q 005958          383 TKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       383 ~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      .||++|||++|+|+||||+..+
T Consensus       423 VdP~~R~s~~eaL~hpW~~~~~  444 (475)
T KOG0615|consen  423 VDPENRPSADEALNHPWFKDAP  444 (475)
T ss_pred             eCcccCcCHHHHhcChhhhccc
Confidence            9999999999999999999876

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-51  Score=435.49  Aligned_cols=273  Identities=23%  Similarity=0.312  Sum_probs=232.0

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHH--HHHHHHHHHHHhhccCCCCCcce
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRR--GRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~--~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      +.+++|.++++||.|+||    .||+|+.+.     ++..||||.|++.- .-++  -.||+..|++|.     .|||||
T Consensus         7 ~~m~RY~~i~klGDGTfG----sV~la~~~~-----~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln-----~hpnii   72 (538)
T KOG0661|consen    7 IFMDRYTVIRKLGDGTFG----SVYLAKSKE-----TGELVAIKKMKKKFYSWEECMNLREVKSLRKLN-----PHPNII   72 (538)
T ss_pred             hHHHHHHHHHHhcCCcce----eEEEeeecC-----CCceeeHHHHHhhhccHHHHHHHHHHHHHHhcC-----CCCcch
Confidence            457899999999999999    999999998     89999999998632 2222  389999999995     499999


Q ss_pred             EEEEEEEecccCCCC-eEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRS-LFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~-~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      ++++++.     +.+ .+|+||| ||++ +|+++|+.++.        .|+|                    ..|+.|++
T Consensus        73 kL~Evi~-----d~~~~L~fVfE-~Md~-NLYqLmK~R~r--------~fse--------------------~~irnim~  117 (538)
T KOG0661|consen   73 KLKEVIR-----DNDRILYFVFE-FMDC-NLYQLMKDRNR--------LFSE--------------------SDIRNIMY  117 (538)
T ss_pred             hhHHHhh-----ccCceEeeeHH-hhhh-hHHHHHhhcCC--------cCCH--------------------HHHHHHHH
Confidence            9999998     444 9999999 9999 99999998642        5665                    56899999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCCC--------CCCCcccccCCCCCCchhhHHHH
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGP--------NNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~~--------~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      ||++||+|+|.+|+.|||+||||||+.. ...+||+|||+|+......|        -|+|||+++....|+.++||||+
T Consensus       118 QilqGL~hiHk~GfFHRDlKPENiLi~~-~~~iKiaDFGLARev~SkpPYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~  196 (538)
T KOG0661|consen  118 QILQGLAHIHKHGFFHRDLKPENILISG-NDVIKIADFGLAREVRSKPPYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAV  196 (538)
T ss_pred             HHHHHHHHHHhcCcccccCChhheEecc-cceeEecccccccccccCCCcchhhhcccccchHHhhhccccCCchHHHHH
Confidence            9999999999999999999999999997 78999999999999887764        48999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCh---hhhhhhhhhhccCCChhH-HHH--HHHHHhccCCCCC-CCCc-ccccCCCHHHHHHHHHhhh
Q 005958          311 GFMMAKMVLRELMDP---LIFTKFKSFLTKGIDPSC-LRE--FLLQVLNRNSSSG-NTGF-QILDRNWGAGWNLLSLLLA  382 (667)
Q Consensus       311 GviLyemltG~~PF~---~~~~~~~~~~~~g~~~~~-l~~--~~~~~~~~~~~~~-~~~~-~~~~~~s~e~~dLI~~~L~  382 (667)
                      |||++|+.+-+|.|+   +.+|++++....|++..+ +.+  .+...+....+.. ...+ ...++.++++.+||.+||.
T Consensus       197 GcI~aEl~sLrPLFPG~sE~Dqi~KIc~VLGtP~~~~~~eg~~La~~mnf~~P~~~~~~l~~L~p~~s~~~~~li~~ll~  276 (538)
T KOG0661|consen  197 GCIMAELYSLRPLFPGASEIDQIYKICEVLGTPDKDSWPEGYNLASAMNFRFPQVKPSPLKDLLPNASSEAASLIERLLA  276 (538)
T ss_pred             HHHHHHHHHhcccCCCCcHHHHHHHHHHHhCCCccccchhHHHHHHHhccCCCcCCCCChHHhCcccCHHHHHHHHHHhc
Confidence            999999999999999   578999999999998754 333  1223333332221 2222 3567799999999999999


Q ss_pred             cCcCCCCCHHHHHcCCCCCCCCC
Q 005958          383 TKPSKRISCLDALRHPFLCGPRW  405 (667)
Q Consensus       383 ~DP~kRpSa~elL~HPwf~~~~~  405 (667)
                      +||++||||+|+|+||||+....
T Consensus       277 WDP~kRpTA~~al~~pffq~~~~  299 (538)
T KOG0661|consen  277 WDPDKRPTASQALQHPFFQVGRA  299 (538)
T ss_pred             CCCccCccHHHHhcCcccccccc
Confidence            99999999999999999998653

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=1.2e-50  Score=401.50  Aligned_cols=269  Identities=24%  Similarity=0.332  Sum_probs=231.2

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh----HHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA----QRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~----~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ++|...++||+|+||    +||+|++..     +|+.||||+++..+.    .....|||+.|+.++      |+||+.+
T Consensus         2 ~rY~~~~~lGEG~~g----vVyka~d~~-----t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~------h~nIi~L   66 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYG----VVYKARDTE-----TGKRVAIKKIKLGNAKDGINRTALREIKLLQELK------HPNIIEL   66 (318)
T ss_pred             chhhhhhhhcCcceE----EEEEEEecC-----CCcEEEEEEeeccccccCccHHHHHHHHHHHHcc------Ccchhhh
Confidence            579999999999999    999999998     899999999986432    356799999999995      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      +++|.     ..+.+.||+| |++. ||...|+...        ..|                    ++.+|+.|+.+++
T Consensus        67 iD~F~-----~~~~l~lVfE-fm~t-dLe~vIkd~~--------i~l--------------------~pa~iK~y~~m~L  111 (318)
T KOG0659|consen   67 IDVFP-----HKSNLSLVFE-FMPT-DLEVVIKDKN--------IIL--------------------SPADIKSYMLMTL  111 (318)
T ss_pred             hhhcc-----CCCceEEEEE-eccc-cHHHHhcccc--------ccc--------------------CHHHHHHHHHHHH
Confidence            99998     8899999999 9999 9999998754        123                    3578999999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC---------CCCCCcccccCCCCCCchhhHHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG---------PNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~---------~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      +||+|||++.|+||||||.|+||++ +|.+||+|||+|+.+....         .-|+|||++++.+.|+..+||||+||
T Consensus       112 kGl~y~H~~~IlHRDlKPnNLLis~-~g~lKiADFGLAr~f~~p~~~~~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGC  190 (318)
T KOG0659|consen  112 KGLAYCHSKWILHRDLKPNNLLISS-DGQLKIADFGLARFFGSPNRIQTHQVVTRWYRAPELLFGSRQYGTGVDMWAVGC  190 (318)
T ss_pred             HHHHHHHhhhhhcccCCccceEEcC-CCcEEeecccchhccCCCCcccccceeeeeccChHHhccchhcCCcchhhhHHH
Confidence            9999999999999999999999999 9999999999999887654         46899999999999999999999999


Q ss_pred             HHHHHHhCCCCCh---hhhhhhhhhhccCCChhH-HHH------HHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhh
Q 005958          313 MMAKMVLRELMDP---LIFTKFKSFLTKGIDPSC-LRE------FLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLA  382 (667)
Q Consensus       313 iLyemltG~~PF~---~~~~~~~~~~~~g~~~~~-l~~------~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~  382 (667)
                      |+.||+.|.|.|+   +++|+..+|...|++..+ +.+      +..-. ..+.+   ......+..++++.||+.+||.
T Consensus       191 I~AELllr~P~fpG~sDidQL~~If~~LGTP~~~~WP~~~~lpdY~~~~-~~P~~---~~~~lf~aas~d~ldLl~~m~~  266 (318)
T KOG0659|consen  191 IFAELLLRVPFFPGDSDIDQLSKIFRALGTPTPDQWPEMTSLPDYVKIQ-QFPKP---PLNNLFPAASSDALDLLSKMLT  266 (318)
T ss_pred             HHHHHHccCCCCCCCchHHHHHHHHHHcCCCCcccCccccccccHHHHh-cCCCC---ccccccccccHHHHHHHHhhhc
Confidence            9999999999998   588999999999998643 322      22111 11111   1112667888999999999999


Q ss_pred             cCcCCCCCHHHHHcCCCCCCCCCCCCC
Q 005958          383 TKPSKRISCLDALRHPFLCGPRWRVDP  409 (667)
Q Consensus       383 ~DP~kRpSa~elL~HPwf~~~~~~~~~  409 (667)
                      +||.+|+||.|+|+|+||...+.+..+
T Consensus       267 ynP~~Rita~qaL~~~yf~~~P~pt~~  293 (318)
T KOG0659|consen  267 YNPKKRITASQALKHPYFKSLPLPTPP  293 (318)
T ss_pred             cCchhcccHHHHhcchhhhcCCCCCCh
Confidence            999999999999999999986654444

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2e-49  Score=430.89  Aligned_cols=242  Identities=21%  Similarity=0.301  Sum_probs=212.4

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcc-----hhhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS-----VQAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~-----~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      .+|+.++.||+|+|+    .||.+++..     +|+.||+|++.+     ....+.+.+||+|.+.|+      |||||+
T Consensus        18 ~~Y~~g~~LGkGgFA----~cYe~~~~~-----tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~------HpnIV~   82 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFA----RCYEARDLD-----TGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLK------HPNIVQ   82 (592)
T ss_pred             ceeeeeeeeccCcce----EEEEEEEcC-----CCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcC------CCcEEe
Confidence            569999999999999    999999987     899999999986     334466799999999995      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      ++++|+     +.+++|||+| +|..|+|..++++++         .|+|.+                    ++.|++||
T Consensus        83 f~~~FE-----Ds~nVYivLE-LC~~~sL~el~Krrk---------~ltEpE--------------------ary~l~QI  127 (592)
T KOG0575|consen   83 FYHFFE-----DSNNVYIVLE-LCHRGSLMELLKRRK---------PLTEPE--------------------ARYFLRQI  127 (592)
T ss_pred             eeeEee-----cCCceEEEEE-ecCCccHHHHHHhcC---------CCCcHH--------------------HHHHHHHH
Confidence            999999     8899999999 999999999999765         777754                    67899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      +.||.|||+++|+|||||..|+|+++ +.++||+|||+|..+..+         +|.|.|||++. ...++..+||||+|
T Consensus       128 v~GlkYLH~~~IiHRDLKLGNlfL~~-~~~VKIgDFGLAt~le~~~Erk~TlCGTPNYIAPEVl~-k~gHsfEvDiWSlG  205 (592)
T KOG0575|consen  128 VEGLKYLHSLGIIHRDLKLGNLFLNE-NMNVKIGDFGLATQLEYDGERKKTLCGTPNYIAPEVLN-KSGHSFEVDIWSLG  205 (592)
T ss_pred             HHHHHHHHhcCceecccchhheeecC-cCcEEecccceeeeecCcccccceecCCCcccChhHhc-cCCCCCchhhhhhh
Confidence            99999999999999999999999999 889999999999988754         29999999655 66799999999999


Q ss_pred             HHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH
Q 005958          312 FMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC  391 (667)
Q Consensus       312 viLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa  391 (667)
                      ||+|.||.|+|||..               ..+.+....+...       .+.++..+|.++++||.+||+.||.+|||+
T Consensus       206 cvmYtLL~G~PPFet---------------k~vkety~~Ik~~-------~Y~~P~~ls~~A~dLI~~lL~~~P~~Rpsl  263 (592)
T KOG0575|consen  206 CVMYTLLVGRPPFET---------------KTVKETYNKIKLN-------EYSMPSHLSAEAKDLIRKLLRPNPSERPSL  263 (592)
T ss_pred             hHHHhhhhCCCCccc---------------chHHHHHHHHHhc-------CcccccccCHHHHHHHHHHhcCCcccCCCH
Confidence            999999999999951               2233443333322       344566889999999999999999999999


Q ss_pred             HHHHcCCCCC
Q 005958          392 LDALRHPFLC  401 (667)
Q Consensus       392 ~elL~HPwf~  401 (667)
                      +++|.|+||.
T Consensus       264 ~~vL~h~Ff~  273 (592)
T KOG0575|consen  264 DEVLDHPFFK  273 (592)
T ss_pred             HHHhcCHhhh
Confidence            9999999994

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=2e-49  Score=424.39  Aligned_cols=254  Identities=20%  Similarity=0.272  Sum_probs=218.9

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-----hhHHHHHHHHHHHHHHhhccCCCCC
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-----QAQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-----~~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      .....+|.+++.||+|+|+    +|++|+++.     +++.||||++.+.     +..+.+.+|-.+|.+|.     +||
T Consensus        69 kk~~~DF~Fg~~lGeGSYS----tV~~A~~~~-----t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~-----~hP  134 (604)
T KOG0592|consen   69 KKTPNDFKFGKILGEGSYS----TVVLAREKA-----TGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLS-----GHP  134 (604)
T ss_pred             cCChhhcchhheeccccce----eEEEeeecC-----CCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhh-----CCC
Confidence            4567899999999999999    999999998     8999999999863     33356689999999997     799


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      .|++||..|+     ++..+|+|+| |+++|+|.++|++.+         .|+|..                    .++|
T Consensus       135 givkLy~TFQ-----D~~sLYFvLe-~A~nGdll~~i~K~G---------sfde~c--------------------aR~Y  179 (604)
T KOG0592|consen  135 GIVKLYFTFQ-----DEESLYFVLE-YAPNGDLLDLIKKYG---------SFDETC--------------------ARFY  179 (604)
T ss_pred             CeEEEEEEee-----cccceEEEEE-ecCCCcHHHHHHHhC---------cchHHH--------------------HHHH
Confidence            9999999999     8899999999 999999999999976         677644                    6889


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC----------------------CCCCCccc
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG----------------------PNNSSPDS  294 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~----------------------~~Y~APE~  294 (667)
                      +.||+.||+|||++|||||||||||||++. ++++||+|||.|+.+....                      ..|.+|| 
T Consensus       180 AAeIldAleylH~~GIIHRDlKPENILLd~-dmhikITDFGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPE-  257 (604)
T KOG0592|consen  180 AAEILDALEYLHSNGIIHRDLKPENILLDK-DGHIKITDFGSAKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPE-  257 (604)
T ss_pred             HHHHHHHHHHHHhcCceeccCChhheeEcC-CCcEEEeeccccccCChhhccccCccCcccccCcccceeeeecccCHH-
Confidence            999999999999999999999999999999 9999999999998664321                      4699999 


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHH
Q 005958          295 NMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGW  374 (667)
Q Consensus       295 l~~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~  374 (667)
                      ++.....++.+|||+||||||.|+.|.|||..            .+....   +++++..       .+.+.+..++.++
T Consensus       258 lL~~~~~~~~sDiWAlGCilyQmlaG~PPFra------------~Neyli---FqkI~~l-------~y~fp~~fp~~a~  315 (604)
T KOG0592|consen  258 LLNDSPAGPSSDLWALGCILYQMLAGQPPFRA------------ANEYLI---FQKIQAL-------DYEFPEGFPEDAR  315 (604)
T ss_pred             HhcCCCCCcccchHHHHHHHHHHhcCCCCCcc------------ccHHHH---HHHHHHh-------cccCCCCCCHHHH
Confidence            66677789999999999999999999999952            222111   2222221       3455667889999


Q ss_pred             HHHHHhhhcCcCCCCCHHHHHcCCCCCCCCCCCC
Q 005958          375 NLLSLLLATKPSKRISCLDALRHPFLCGPRWRVD  408 (667)
Q Consensus       375 dLI~~~L~~DP~kRpSa~elL~HPwf~~~~~~~~  408 (667)
                      |||+++|..||.+|+|+.||.+||||.+++|...
T Consensus       316 dLv~KLLv~dp~~Rlt~~qIk~HpFF~~Vdw~nl  349 (604)
T KOG0592|consen  316 DLIKKLLVRDPSDRLTSQQIKAHPFFEGVDWENL  349 (604)
T ss_pred             HHHHHHHccCccccccHHHHhhCcccccCChhhh
Confidence            9999999999999999999999999999998653

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=1.1e-50  Score=407.50  Aligned_cols=268  Identities=20%  Similarity=0.289  Sum_probs=224.8

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhH----HHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQ----RRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~----~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      |+.|+.+.++|+|+||    +||+|+++.     ||+.||||++....++    +-.+|||.+|++|+      |||+|.
T Consensus         1 MekYE~LgkvGEGSYG----vV~KCrnk~-----TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLk------H~NLVn   65 (396)
T KOG0593|consen    1 MEKYEKLGKVGEGSYG----VVMKCRNKD-----TGQIVAIKKFVESEDDPVVKKIALREIRMLKQLK------HENLVN   65 (396)
T ss_pred             CcHHhhhhccccCcce----EEEEeccCC-----cccEEEEEeeccCCccHHHHHHHHHHHHHHHhcc------cchHHH
Confidence            5789999999999999    999999999     9999999999764332    34589999999996      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      ++++|.     ....+++|+| ||+. ++.+.+.+..        ..++                    ...++.|++|+
T Consensus        66 LiEVFr-----rkrklhLVFE-~~dh-TvL~eLe~~p--------~G~~--------------------~~~vk~~l~Q~  110 (396)
T KOG0593|consen   66 LIEVFR-----RKRKLHLVFE-YCDH-TVLHELERYP--------NGVP--------------------SELVKKYLYQL  110 (396)
T ss_pred             HHHHHH-----hcceeEEEee-ecch-HHHHHHHhcc--------CCCC--------------------HHHHHHHHHHH
Confidence            999998     8899999999 9999 8888887643        1333                    35689999999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC---------CCCCCcccccCCCCCCchhhHHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG---------PNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~---------~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      +.|+.|+|+++|||||||||||||+. +|.+||||||+|+.+..+.         .-|+|||++.+...|+..+||||+|
T Consensus       111 l~ai~~cHk~n~IHRDIKPENILit~-~gvvKLCDFGFAR~L~~pgd~YTDYVATRWYRaPELLvGDtqYG~pVDiWAiG  189 (396)
T KOG0593|consen  111 LKAIHFCHKNNCIHRDIKPENILITQ-NGVVKLCDFGFARTLSAPGDNYTDYVATRWYRAPELLVGDTQYGKPVDIWAIG  189 (396)
T ss_pred             HHHhhhhhhcCeecccCChhheEEec-CCcEEeccchhhHhhcCCcchhhhhhhhhhccChhhhcccCcCCCcccchhhh
Confidence            99999999999999999999999999 9999999999999887433         5688999999999999999999999


Q ss_pred             HHHHHHHhCCCCCh---hhhhhhhhhhccCCChhHHHHHHHH--Hhc---cCCCCCCCCc-ccccCCCHHHHHHHHHhhh
Q 005958          312 FMMAKMVLRELMDP---LIFTKFKSFLTKGIDPSCLREFLLQ--VLN---RNSSSGNTGF-QILDRNWGAGWNLLSLLLA  382 (667)
Q Consensus       312 viLyemltG~~PF~---~~~~~~~~~~~~g~~~~~l~~~~~~--~~~---~~~~~~~~~~-~~~~~~s~e~~dLI~~~L~  382 (667)
                      |++.||++|.|.||   +++|++.+....|.-.....+.+..  .+.   .+.+.....+ ...++++.-+.||+++||.
T Consensus       190 Cv~aEl~~G~pL~PG~SDiDQLy~I~ktLG~L~prhq~iF~~N~~F~Gv~lP~~~~~epLe~k~p~~s~~~ld~~k~cL~  269 (396)
T KOG0593|consen  190 CVFAELLTGEPLWPGRSDIDQLYLIRKTLGNLIPRHQSIFSSNPFFHGVRLPEPEHPEPLERKYPKISNVLLDLLKKCLK  269 (396)
T ss_pred             HHHHHHhcCCcCCCCcchHHHHHHHHHHHcccCHHHHHHhccCCceeeeecCCCCCccchhhhcccchHHHHHHHHHHhc
Confidence            99999999999999   5788898888888876655555422  111   1111111111 2345678899999999999


Q ss_pred             cCcCCCCCHHHHHcCCCCCCC
Q 005958          383 TKPSKRISCLDALRHPFLCGP  403 (667)
Q Consensus       383 ~DP~kRpSa~elL~HPwf~~~  403 (667)
                      .||.+|++++|+|.||||++.
T Consensus       270 ~dP~~R~sc~qll~H~yFd~~  290 (396)
T KOG0593|consen  270 MDPDDRLSCEQLLHHPYFDGF  290 (396)
T ss_pred             CCccccccHHHHhcChHHHHH
Confidence            999999999999999999653

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=8.3e-50  Score=413.04  Aligned_cols=255  Identities=18%  Similarity=0.275  Sum_probs=218.0

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcc---hhhHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS---VQAQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~---~~~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      .+..++.+.++.||+|+.|    +||+|+|+.     +++.+|+|.+..   ....+++.+|+++++++      +||||
T Consensus        75 ~i~~~dle~~~~lG~G~gG----~V~kv~Hk~-----t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~------~spyI  139 (364)
T KOG0581|consen   75 GISLSDLERLGVLGSGNGG----TVYKVRHKP-----TGKIYALKVILLNIDPALQKQILRELEILRSC------QSPYI  139 (364)
T ss_pred             ccCHHHhhhhhhcccCCCc----EEEEEEEcC-----CCeEEEEEeecccCCHHHHHHHHHHHHHHhhC------CCCCe
Confidence            3566889999999999999    999999998     899999999953   34567889999999999      49999


Q ss_pred             eEEEEEEEecccCCCC-eEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRS-LFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~-~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |.+|++|.     ..+ .++|+|| ||++|+|.++++..+         +++|                    ..+..++
T Consensus       140 V~~ygaF~-----~~~~~isI~mE-YMDgGSLd~~~k~~g---------~i~E--------------------~~L~~ia  184 (364)
T KOG0581|consen  140 VGFYGAFY-----SNGEEISICME-YMDGGSLDDILKRVG---------RIPE--------------------PVLGKIA  184 (364)
T ss_pred             eeEeEEEE-----eCCceEEeehh-hcCCCCHHHHHhhcC---------CCCH--------------------HHHHHHH
Confidence            99999999     555 6999999 999999999999765         5565                    4578899


Q ss_pred             HHHHHHHHHHHH-CCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-------CCCCCCcccccCCCCCCchhhHHH
Q 005958          238 RDLLIGVNYLHS-HGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-------GPNNSSPDSNMDRRQMMIAFDMRC  309 (667)
Q Consensus       238 ~QIl~aL~yLHs-~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-------~~~Y~APE~l~~~~~ys~ksDIWS  309 (667)
                      .+|++||.|||. ++||||||||+|||++. .|.+||||||.+..+...       +..|||||.+ .+..|+.++||||
T Consensus       185 ~~VL~GL~YLh~~~~IIHRDIKPsNlLvNs-kGeVKicDFGVS~~lvnS~a~tfvGT~~YMsPERi-~g~~Ys~~sDIWS  262 (364)
T KOG0581|consen  185 RAVLRGLSYLHEERKIIHRDIKPSNLLVNS-KGEVKICDFGVSGILVNSIANTFVGTSAYMSPERI-SGESYSVKSDIWS  262 (364)
T ss_pred             HHHHHHHHHHhhccCeeeccCCHHHeeecc-CCCEEeccccccHHhhhhhcccccccccccChhhh-cCCcCCcccceec
Confidence            999999999995 99999999999999999 999999999999866543       3689999955 4556999999999


Q ss_pred             HHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCccccc-CCCHHHHHHHHHhhhcCcCCC
Q 005958          310 VGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILD-RNWGAGWNLLSLLLATKPSKR  388 (667)
Q Consensus       310 LGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~s~e~~dLI~~~L~~DP~kR  388 (667)
                      ||++++||++|+.||+..          ..+...+.+.+..++..+++.      .+. .+|+++++||..||++||.+|
T Consensus       263 LGLsllE~a~GrfP~~~~----------~~~~~~~~~Ll~~Iv~~ppP~------lP~~~fS~ef~~FV~~CL~Kdp~~R  326 (364)
T KOG0581|consen  263 LGLSLLELAIGRFPYPPP----------NPPYLDIFELLCAIVDEPPPR------LPEGEFSPEFRSFVSCCLRKDPSER  326 (364)
T ss_pred             ccHHHHHHhhCCCCCCCc----------CCCCCCHHHHHHHHhcCCCCC------CCcccCCHHHHHHHHHHhcCCcccC
Confidence            999999999999998632          223344566666677665553      222 489999999999999999999


Q ss_pred             CCHHHHHcCCCCCCCC
Q 005958          389 ISCLDALRHPFLCGPR  404 (667)
Q Consensus       389 pSa~elL~HPwf~~~~  404 (667)
                      ||++|+|+|||+....
T Consensus       327 ~s~~qLl~Hpfi~~~~  342 (364)
T KOG0581|consen  327 PSAKQLLQHPFIKKFE  342 (364)
T ss_pred             CCHHHHhcCHHHhhcc
Confidence            9999999999998765

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=6.3e-50  Score=425.29  Aligned_cols=274  Identities=20%  Similarity=0.267  Sum_probs=230.5

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh----HHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA----QRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~----~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      ...+.|+.+++||+|+||    .||+|++..     +|+.||+|++.....    .....|||.||++|      +||||
T Consensus       114 r~~~~feki~kIGeGTyg----~VYkAr~~~-----tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l------~HpNI  178 (560)
T KOG0600|consen  114 RRADSFEKIEKIGEGTYG----QVYKARDLE-----TGKIVALKKVRFDNEKEGFPITAIREIKILRRL------DHPNI  178 (560)
T ss_pred             cchHHHHHHHHhcCcchh----heeEeeecc-----cCcEEEEEEeecccCCCcchHHHHHHHHHHHhc------CCCcc
Confidence            345789999999999999    999999998     899999999986543    24568999999999      59999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      +++.+...+.   ..+.+|||+| ||+. ||.-++...+        ..|+|                    .+|++||+
T Consensus       179 ikL~eivt~~---~~~siYlVFe-YMdh-DL~GLl~~p~--------vkft~--------------------~qIKc~mk  225 (560)
T KOG0600|consen  179 IKLEEIVTSK---LSGSIYLVFE-YMDH-DLSGLLSSPG--------VKFTE--------------------PQIKCYMK  225 (560)
T ss_pred             cceeeEEEec---CCceEEEEEe-cccc-hhhhhhcCCC--------cccCh--------------------HHHHHHHH
Confidence            9999999844   5689999999 9999 9999887643        35555                    67999999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC----------CCCCCcccccCCCCCCchhhHH
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG----------PNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~----------~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      ||+.||+|||++||+|||||.+||||+. +|.+||+|||+|+.+....          .-|+|||++++...|+.++|+|
T Consensus       226 QLl~Gl~~cH~~gvlHRDIK~SNiLidn-~G~LKiaDFGLAr~y~~~~~~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlW  304 (560)
T KOG0600|consen  226 QLLEGLEYCHSRGVLHRDIKGSNILIDN-NGVLKIADFGLARFYTPSGSAPYTSRVVTLWYRPPELLLGATSYGTAVDLW  304 (560)
T ss_pred             HHHHHHHHHhhcCeeeccccccceEEcC-CCCEEeccccceeeccCCCCcccccceEEeeccChHHhcCCcccccceeeh
Confidence            9999999999999999999999999999 9999999999999776654          3589999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCh---hhhhhhhhhhccCCChhHHHHHHH-H---HhccCCCCCCCCcccccCCCHHHHHHHHHhh
Q 005958          309 CVGFMMAKMVLRELMDP---LIFTKFKSFLTKGIDPSCLREFLL-Q---VLNRNSSSGNTGFQILDRNWGAGWNLLSLLL  381 (667)
Q Consensus       309 SLGviLyemltG~~PF~---~~~~~~~~~~~~g~~~~~l~~~~~-~---~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L  381 (667)
                      |+||||.||++|+|.|+   +.+|+..+|..+|.+.+....... .   .+....++...-.+....+++.+.+|+..||
T Consensus       305 S~GCIl~El~~gkPI~~G~tEveQl~kIfklcGSP~e~~W~~~kLP~~~~~kp~~~y~r~l~E~~~~~~~~~l~Ll~~lL  384 (560)
T KOG0600|consen  305 SVGCILAELFLGKPILQGRTEVEQLHKIFKLCGSPTEDYWPVSKLPHATIFKPQQPYKRRLRETFKDFPASALDLLEKLL  384 (560)
T ss_pred             hhhHHHHHHHcCCCCcCCccHHHHHHHHHHHhCCCChhccccccCCcccccCCCCcccchHHHHhccCCHHHHHHHHHHh
Confidence            99999999999999999   578999999999999876544111 0   0111111111111235567889999999999


Q ss_pred             hcCcCCCCCHHHHHcCCCCCCCCC
Q 005958          382 ATKPSKRISCLDALRHPFLCGPRW  405 (667)
Q Consensus       382 ~~DP~kRpSa~elL~HPwf~~~~~  405 (667)
                      ..||.+|.||.++|+|+||...+.
T Consensus       385 ~ldP~kR~tA~~aL~seyF~t~p~  408 (560)
T KOG0600|consen  385 SLDPDKRGTASSALQSEYFTTEPL  408 (560)
T ss_pred             ccCccccccHHHHhcCcccccCCC
Confidence            999999999999999999965543

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=6.7e-49  Score=406.18  Aligned_cols=254  Identities=22%  Similarity=0.340  Sum_probs=216.7

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCC
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      ....++|++++.||+|+||    +||+++.+.     +++.||+|++++..     ..+....|..||.+++      ||
T Consensus        21 ~~~~~dF~~lkviGkG~fG----kV~~Vrk~d-----t~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~------hP   85 (357)
T KOG0598|consen   21 MVGPDDFEILKVIGKGSFG----KVFQVRKKD-----TGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIK------HP   85 (357)
T ss_pred             cCChhheeeeeeeeccCCc----eEEEEEEcc-----cCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCC------CC
Confidence            3557999999999999999    999999997     89999999998733     3456789999999984      99


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      +||+++..|+     +.+.+|+|+| |+.||+|+..|++.+         .|+|..                    ++.|
T Consensus        86 Fiv~l~ysFQ-----t~~kLylVld-~~~GGeLf~hL~~eg---------~F~E~~--------------------arfY  130 (357)
T KOG0598|consen   86 FIVKLIYSFQ-----TEEKLYLVLD-YLNGGELFYHLQREG---------RFSEDR--------------------ARFY  130 (357)
T ss_pred             cEeeeEEecc-----cCCeEEEEEe-ccCCccHHHHHHhcC---------CcchhH--------------------HHHH
Confidence            9999999999     8899999999 999999999999876         677754                    6889


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhH
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDI  307 (667)
                      +.+|+.||.|||++|||||||||||||++. +|+++|+|||+|+.....         ++.|||||++++. .|+..+|+
T Consensus       131 laEi~lAL~~LH~~gIiyRDlKPENILLd~-~GHi~LtDFgL~k~~~~~~~~t~tfcGT~eYmAPEil~~~-gy~~~vDW  208 (357)
T KOG0598|consen  131 LAEIVLALGYLHSKGIIYRDLKPENILLDE-QGHIKLTDFGLCKEDLKDGDATRTFCGTPEYMAPEILLGK-GYDKAVDW  208 (357)
T ss_pred             HHHHHHHHHHHHhCCeeeccCCHHHeeecC-CCcEEEeccccchhcccCCCccccccCCccccChHHHhcC-CCCcccch
Confidence            999999999999999999999999999999 999999999999854332         2889999966655 69999999


Q ss_pred             HHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccC-CCHHHHHHHHHhhhcCcC
Q 005958          308 RCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDR-NWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       308 WSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~s~e~~dLI~~~L~~DP~  386 (667)
                      |||||++|||++|.+||.            +.+..   +.+.++....       ....+. +++++++||+++|+.||+
T Consensus       209 WsLGillYeML~G~pPF~------------~~~~~---~~~~~I~~~k-------~~~~p~~ls~~ardll~~LL~rdp~  266 (357)
T KOG0598|consen  209 WSLGILLYEMLTGKPPFY------------AEDVK---KMYDKILKGK-------LPLPPGYLSEEARDLLKKLLKRDPR  266 (357)
T ss_pred             HhHHHHHHHHhhCCCCCc------------CccHH---HHHHHHhcCc-------CCCCCccCCHHHHHHHHHHhccCHH
Confidence            999999999999999995            32322   3333333332       122333 789999999999999999


Q ss_pred             CCC----CHHHHHcCCCCCCCCCCCCC
Q 005958          387 KRI----SCLDALRHPFLCGPRWRVDP  409 (667)
Q Consensus       387 kRp----Sa~elL~HPwf~~~~~~~~~  409 (667)
                      +|.    .++++-+||||.+++|...-
T Consensus       267 ~RLg~~~d~~~ik~HpfF~~inW~~l~  293 (357)
T KOG0598|consen  267 QRLGGPGDAEEIKRHPFFKGINWEKLL  293 (357)
T ss_pred             HhcCCCCChHHhhcCcccccCCHHHHH
Confidence            996    68999999999999985443

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=2.1e-49  Score=402.76  Aligned_cols=278  Identities=24%  Similarity=0.323  Sum_probs=231.7

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHH----HHHHHHHHHHHHhhccCCCCCcc
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQR----RGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~----~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      -.+++|+.+.+|++|+||    +||+|+++.     |++.||+|+++.....+    ...|||.+|.+++      ||||
T Consensus        73 rsv~efe~lnrI~EGtyG----iVYRakdk~-----t~eIVALKr~kmekek~GFPItsLREIniLl~~~------H~NI  137 (419)
T KOG0663|consen   73 RSVEEFEKLNRIEEGTYG----VVYRAKDKK-----TDEIVALKRLKMEKEKEGFPITSLREINILLKAR------HPNI  137 (419)
T ss_pred             ccHHHHHHHhhcccCcce----eEEEeccCC-----cceeEEeeecccccccCCCcchhHHHHHHHHhcC------CCCe
Confidence            446889999999999999    999999998     89999999998765433    2389999999995      9999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      |.+.++....   +-+.+||||| ||+. ||..+|..-+        .+|.+                    ..++.++.
T Consensus       138 V~vkEVVvG~---~~d~iy~VMe-~~Eh-DLksl~d~m~--------q~F~~--------------------~evK~L~~  184 (419)
T KOG0663|consen  138 VEVKEVVVGS---NMDKIYIVME-YVEH-DLKSLMETMK--------QPFLP--------------------GEVKTLML  184 (419)
T ss_pred             eeeEEEEecc---ccceeeeeHH-HHHh-hHHHHHHhcc--------CCCch--------------------HHHHHHHH
Confidence            9999999855   6678999999 9999 9999998743        24443                    56899999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC---------CCCCCcccccCCCCCCchhhHHH
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG---------PNNSSPDSNMDRRQMMIAFDMRC  309 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~---------~~Y~APE~l~~~~~ys~ksDIWS  309 (667)
                      |++.||+|||.+.|+||||||+|+|++. .|.+||+|||+|+.+....         .-|+|||++++...|++++|+||
T Consensus       185 QlL~glk~lH~~wilHRDLK~SNLLm~~-~G~lKiaDFGLAR~ygsp~k~~T~lVVTLWYRaPELLLG~~tyst~iDMWS  263 (419)
T KOG0663|consen  185 QLLRGLKHLHDNWILHRDLKTSNLLLSH-KGILKIADFGLAREYGSPLKPYTPLVVTLWYRAPELLLGAKTYSTAVDMWS  263 (419)
T ss_pred             HHHHHHHHHhhceeEecccchhheeecc-CCcEEecccchhhhhcCCcccCcceEEEeeecCHHHhcCCcccCcchhhhh
Confidence            9999999999999999999999999998 9999999999999998773         45999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCh---hhhhhhhhhhccCCChhHHHHHHHH------HhccCCCCCC--CCcccccCCCHHHHHHHH
Q 005958          310 VGFMMAKMVLRELMDP---LIFTKFKSFLTKGIDPSCLREFLLQ------VLNRNSSSGN--TGFQILDRNWGAGWNLLS  378 (667)
Q Consensus       310 LGviLyemltG~~PF~---~~~~~~~~~~~~g~~~~~l~~~~~~------~~~~~~~~~~--~~~~~~~~~s~e~~dLI~  378 (667)
                      +|||+.||++++|.|+   +.+|+.++|...|++.+....-+..      .-....+...  ..+... ..++...+|+.
T Consensus       264 vGCI~aE~l~~kPlf~G~sE~dQl~~If~llGtPte~iwpg~~~lp~~k~~~f~~~pyn~lr~kF~~~-~lse~g~~Lln  342 (419)
T KOG0663|consen  264 VGCIFAELLTQKPLFPGKSEIDQLDKIFKLLGTPSEAIWPGYSELPAVKKMTFSEHPYNNLRKKFGAL-SLSEQGFDLLN  342 (419)
T ss_pred             HHHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCccccCCCccccchhhccccCCCCchhhhhhcccc-ccchhHHHHHH
Confidence            9999999999999999   5789999999999987653322111      0000011111  111111 16689999999


Q ss_pred             HhhhcCcCCCCCHHHHHcCCCCCCCCCCCCCc
Q 005958          379 LLLATKPSKRISCLDALRHPFLCGPRWRVDPS  410 (667)
Q Consensus       379 ~~L~~DP~kRpSa~elL~HPwf~~~~~~~~~~  410 (667)
                      .+|.+||.+|.||.|+|+|+||.+.+.+..|.
T Consensus       343 ~llt~dP~kR~tA~~~L~h~~F~e~P~p~~P~  374 (419)
T KOG0663|consen  343 KLLTYDPGKRITAEDGLKHEYFRETPLPIDPS  374 (419)
T ss_pred             HHhccCccccccHHHhhcccccccCCCCCChh
Confidence            99999999999999999999999987655554

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=4.1e-48  Score=414.80  Aligned_cols=260  Identities=18%  Similarity=0.291  Sum_probs=218.3

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-----HHHHHHHHHHHHHHhhccCCCC
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-----QRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-----~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      .++..++|++++.||+|+||    .||+|+.+.     ||..||+|++++...     .+.++.|-.+|...      ++
T Consensus       136 ~r~~~~DFe~Lk~IgkGAfG----eVrLarKk~-----Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~------ds  200 (550)
T KOG0605|consen  136 TRLSLDDFELLKVIGKGAFG----EVRLARKKD-----TGEIYAMKILKKSEMLKKNQVEHVRAERDILAEV------DS  200 (550)
T ss_pred             ccCCcccchhheeeccccce----eEEEEEEcc-----CCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhc------CC
Confidence            35678999999999999999    999999998     999999999997433     34568899999996      69


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      |+||++|..|+     +..++||||| |++|||+..+|.+.+         .|+|+                    .++.
T Consensus       201 ~~vVKLyYsFQ-----D~~~LYLiME-ylPGGD~mTLL~~~~---------~L~e~--------------------~arf  245 (550)
T KOG0605|consen  201 PWVVKLYYSFQ-----DKEYLYLIME-YLPGGDMMTLLMRKD---------TLTED--------------------WARF  245 (550)
T ss_pred             CcEEEEEEEec-----CCCeeEEEEE-ecCCccHHHHHHhcC---------cCchH--------------------HHHH
Confidence            99999999999     8899999999 999999999999876         66764                    5789


Q ss_pred             HHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-------------------------------
Q 005958          236 LMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-------------------------------  284 (667)
Q Consensus       236 i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-------------------------------  284 (667)
                      |+.+++.|++.||.+|+|||||||+|+||+. .|++||+|||+|.-+..                               
T Consensus       246 YiaE~vlAI~~iH~~gyIHRDIKPdNlLiD~-~GHiKLSDFGLs~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (550)
T KOG0605|consen  246 YIAETVLAIESIHQLGYIHRDIKPDNLLIDA-KGHIKLSDFGLSTGLDKKHRIESYRLDEQMQINLSEAKPSDFPKFNTP  324 (550)
T ss_pred             HHHHHHHHHHHHHHcCcccccCChhheeecC-CCCEeeccccccchhhhhhhhhhhcchhhhhhhhccCCCccccccccc
Confidence            9999999999999999999999999999999 99999999999853211                               


Q ss_pred             -------------------------CCCCCCCcccccCCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCC
Q 005958          285 -------------------------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGI  339 (667)
Q Consensus       285 -------------------------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~  339 (667)
                                               ++|.|+|||++++.+ |+..+|+||||||+||||.|.|||.            +.
T Consensus       325 ~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kg-Y~~~cDwWSLG~ImyEmLvGyPPF~------------s~  391 (550)
T KOG0605|consen  325 RSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKG-YGKECDWWSLGCIMYEMLVGYPPFC------------SE  391 (550)
T ss_pred             cchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCC-CCccccHHHHHHHHHHHHhCCCCCC------------CC
Confidence                                     007899999877766 9999999999999999999999994            44


Q ss_pred             ChhH-HHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC---HHHHHcCCCCCCCCCCCCCchh
Q 005958          340 DPSC-LREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS---CLDALRHPFLCGPRWRVDPSID  412 (667)
Q Consensus       340 ~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS---a~elL~HPwf~~~~~~~~~~~~  412 (667)
                      .+.+ ..+++... ..      ..++....++++++|||.+||. ||++|..   ++||.+||||++++|.....+.
T Consensus       392 tp~~T~rkI~nwr-~~------l~fP~~~~~s~eA~DLI~rll~-d~~~RLG~~G~~EIK~HPfF~~v~W~~l~~~~  460 (550)
T KOG0605|consen  392 TPQETYRKIVNWR-ET------LKFPEEVDLSDEAKDLITRLLC-DPENRLGSKGAEEIKKHPFFKGVDWDHLREMP  460 (550)
T ss_pred             CHHHHHHHHHHHh-hh------ccCCCcCcccHHHHHHHHHHhc-CHHHhcCcccHHHHhcCCccccCCcchhhcCC
Confidence            4443 33333221 11      1122334567999999999999 9999985   8999999999999997665544

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-48  Score=401.15  Aligned_cols=273  Identities=19%  Similarity=0.273  Sum_probs=230.7

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcc-h---hhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS-V---QAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~-~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ..|..++.||.|+||    .|..|.++.     +|+.||||++.. .   -..++..||+.+|+.++      |+||+.+
T Consensus        22 ~~y~~~~~iG~GAyG----vVcsA~~~~-----t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~------HeNIi~l   86 (359)
T KOG0660|consen   22 RYYVLIEPIGRGAYG----VVCSAKDKR-----TGEKVAIKKILNPFENQIDAKRTLRELKLLRHLR------HENIIGL   86 (359)
T ss_pred             ceecccccccCccee----eEEEEEEcC-----CCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhc------CCCcceE
Confidence            455668999999999    999999998     899999999873 2   23456789999999995      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++..+..+.-+.+|+|+| +|+. ||.+.|+...         .|++                    .+++.+++||+
T Consensus        87 ~di~~p~~~~~f~DvYiV~e-lMet-DL~~iik~~~---------~L~d--------------------~H~q~f~YQiL  135 (359)
T KOG0660|consen   87 LDIFRPPSRDKFNDVYLVFE-LMET-DLHQIIKSQQ---------DLTD--------------------DHAQYFLYQIL  135 (359)
T ss_pred             EeecccccccccceeEEehh-HHhh-HHHHHHHcCc---------cccH--------------------HHHHHHHHHHH
Confidence            99998655557789999999 9998 9999999864         3555                    57899999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC----CC-------CCCCCcccccCCCCCCchhhHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE----DG-------PNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~----~~-------~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      .||.|+|+.||+||||||.|+|++. ++.+||||||+|+....    +.       .-|+|||+++....|+.++||||+
T Consensus       136 rgLKyiHSAnViHRDLKPsNll~n~-~c~lKI~DFGLAR~~~~~~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSv  214 (359)
T KOG0660|consen  136 RGLKYIHSANVIHRDLKPSNLLLNA-DCDLKICDFGLARYLDKFFEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSV  214 (359)
T ss_pred             Hhcchhhcccccccccchhheeecc-CCCEEeccccceeeccccCcccchhcceeeeeecCHHHHhccccccchhhhhhh
Confidence            9999999999999999999999999 99999999999998853    11       568899999999999999999999


Q ss_pred             HHHHHHHHhCCCCChh---hhhhhhhhhccCCChhHHHHHHH-----HHhccCCCCCCCCc-ccccCCCHHHHHHHHHhh
Q 005958          311 GFMMAKMVLRELMDPL---IFTKFKSFLTKGIDPSCLREFLL-----QVLNRNSSSGNTGF-QILDRNWGAGWNLLSLLL  381 (667)
Q Consensus       311 GviLyemltG~~PF~~---~~~~~~~~~~~g~~~~~l~~~~~-----~~~~~~~~~~~~~~-~~~~~~s~e~~dLI~~~L  381 (667)
                      |||+.||++|++.|++   ..|+..+....|++.++....+.     +.+...+......+ ..+++.++++.||+.+||
T Consensus       215 GCI~AEmL~gkplFpG~d~v~Ql~lI~~~lGtP~~e~l~~i~s~~ar~yi~slp~~p~~~f~~~fp~a~p~AidLlekmL  294 (359)
T KOG0660|consen  215 GCILAEMLTGKPLFPGKDYVHQLQLILELLGTPSEEDLQKIRSEKARPYIKSLPQIPKQPFSSIFPNANPLAIDLLEKML  294 (359)
T ss_pred             hHHHHHHHcCCCCCCCCchHHHHHHHHHhcCCCCHHHHHHhccHHHHHHHHhCCCCCCCCHHHHcCCCCHHHHHHHHHHh
Confidence            9999999999999996   56777778888998766544432     23333333333332 467799999999999999


Q ss_pred             hcCcCCCCCHHHHHcCCCCCCCCC
Q 005958          382 ATKPSKRISCLDALRHPFLCGPRW  405 (667)
Q Consensus       382 ~~DP~kRpSa~elL~HPwf~~~~~  405 (667)
                      ..||.+|+|++|+|+||||.....
T Consensus       295 ~fdP~kRita~eAL~hPYl~~~hd  318 (359)
T KOG0660|consen  295 VFDPKKRITAEEALAHPYLAPYHD  318 (359)
T ss_pred             ccCccccCCHHHHhcChhhhhhcC
Confidence            999999999999999999988653

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.8e-48  Score=402.34  Aligned_cols=276  Identities=22%  Similarity=0.324  Sum_probs=226.9

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVS  166 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~  166 (667)
                      .|.-.+.+|.|+||    .||+|....     +++.||||++..+.  +...+|+++|+.+      +|||||++.-+|.
T Consensus        25 ~~~~~~liG~GsFg----~Vyq~~~~e-----~~~~vAIKKv~~d~--r~knrEl~im~~l------~HpNIV~L~~~f~   87 (364)
T KOG0658|consen   25 SYEAVRLIGSGSFG----VVYQAKLRE-----TEEEVAIKKVLQDK--RYKNRELQIMRKL------DHPNIVRLLYFFS   87 (364)
T ss_pred             EEEeeEEEeecccc----eEEEEEEcC-----CCceeEEEEecCCC--CcCcHHHHHHHhc------CCcCeeeEEEEEE
Confidence            48889999999999    999999998     78999999986543  3446899999988      5999999999998


Q ss_pred             ecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHH
Q 005958          167 SHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNY  246 (667)
Q Consensus       167 ~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~y  246 (667)
                      .....+.-++.+||| |++. +|+++++......     .+                    ++.-.|+.|++||++||.|
T Consensus        88 ~~~~~d~~~lnlVle-ymP~-tL~~~~r~~~~~~-----~~--------------------mp~~~iKLYt~Qlfrgl~y  140 (364)
T KOG0658|consen   88 SSTESDEVYLNLVLE-YMPE-TLYRVIRHYTRAN-----QR--------------------MPLLEIKLYTYQLFRGLAY  140 (364)
T ss_pred             ecCCCchhHHHHHHH-hchH-HHHHHHHHHhhcC-----CC--------------------CceeeeHHHHHHHHHHHHH
Confidence            654333457789999 9999 9999998531000     11                    2234689999999999999


Q ss_pred             HHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC--------CCCCCcccccCCCCCCchhhHHHHHHHHHHHH
Q 005958          247 LHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG--------PNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMV  318 (667)
Q Consensus       247 LHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~--------~~Y~APE~l~~~~~ys~ksDIWSLGviLyeml  318 (667)
                      ||++||+||||||+|||+|.+.|.+||||||.|+.+..+.        .+|+|||++++...|+.+.||||.|||+.||+
T Consensus       141 Lh~~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~~~epniSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl  220 (364)
T KOG0658|consen  141 LHSHGICHRDIKPQNLLVDPDTGVLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELL  220 (364)
T ss_pred             HHhcCcccCCCChheEEEcCCCCeEEeccCCcceeeccCCCceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHh
Confidence            9999999999999999999978999999999999888776        67999999999999999999999999999999


Q ss_pred             hCCCCChh---hhhhhhhhhccCCChhHHHHHHHHHhc-cCCC-CCCCCc-c-cccCCCHHHHHHHHHhhhcCcCCCCCH
Q 005958          319 LRELMDPL---IFTKFKSFLTKGIDPSCLREFLLQVLN-RNSS-SGNTGF-Q-ILDRNWGAGWNLLSLLLATKPSKRISC  391 (667)
Q Consensus       319 tG~~PF~~---~~~~~~~~~~~g~~~~~l~~~~~~~~~-~~~~-~~~~~~-~-~~~~~s~e~~dLI~~~L~~DP~kRpSa  391 (667)
                      -|++.|++   .+|+..++...|++..+....+..... ...+ ...... . .....++++.+|+.++|+++|++|.++
T Consensus       221 ~g~plFpG~s~~dQL~eIik~lG~Pt~e~I~~mn~~y~~~~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~~  300 (364)
T KOG0658|consen  221 KGQPLFPGDSSVDQLVEIIKVLGTPTREDIKSMNPNYTEFKFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSPSKRLSA  300 (364)
T ss_pred             cCCcccCCCCHHHHHHHHHHHhCCCCHHHHhhcCcccccccCcccccccceeecccCCCHHHHHHHHHHhccChhhcCCH
Confidence            99999994   778899999999998765444432211 1111 111111 1 345678999999999999999999999


Q ss_pred             HHHHcCCCCCCCCCC
Q 005958          392 LDALRHPFLCGPRWR  406 (667)
Q Consensus       392 ~elL~HPwf~~~~~~  406 (667)
                      .|+|.||||++.+.+
T Consensus       301 ~~~l~h~fFdelr~~  315 (364)
T KOG0658|consen  301 LEALAHPFFDELRDP  315 (364)
T ss_pred             HHHhcchhhHHhhCc
Confidence            999999999998743

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-47  Score=396.91  Aligned_cols=250  Identities=21%  Similarity=0.295  Sum_probs=210.5

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      ..++|.+.+.||.|+||    +||+|+++.     ++..||||.+.+..    ..+.+..||.+|++++      |||||
T Consensus         8 ~~~~y~~~~~iG~Gsfa----vVykg~h~~-----~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~------H~nIV   72 (429)
T KOG0595|consen    8 VVGDYELSREIGSGSFA----VVYKGRHKK-----SGTEVAIKCIAKKKLNKKLVELLLSEIKILKELK------HPNIV   72 (429)
T ss_pred             ccccceehhhccCcceE----EEEEeEecc-----CCceEEeeeehhhccCHHHHHHHHHHHHHHHhcC------Cccee
Confidence            35899999999999999    999999998     78999999998753    4455689999999995      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      +++++++     ..+++||||| ||+||||.+||++++         +++|                    ..++.++.|
T Consensus        73 ~l~d~~~-----~~~~i~lVME-yC~gGDLs~yi~~~~---------~l~e--------------------~t~r~Fm~Q  117 (429)
T KOG0595|consen   73 RLLDCIE-----DDDFIYLVME-YCNGGDLSDYIRRRG---------RLPE--------------------ATARHFMQQ  117 (429)
T ss_pred             eEEEEEe-----cCCeEEEEEE-eCCCCCHHHHHHHcC---------CCCH--------------------HHHHHHHHH
Confidence            9999999     8889999999 999999999999976         5665                    457889999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCC--C---CeEEEeeecccccccCCC--------CCCCCcccccCCCCCCchhh
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPV--D---RHIKVGILGNAADFYEDG--------PNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~--~---~~vKL~DFGlA~~~~~~~--------~~Y~APE~l~~~~~ys~ksD  306 (667)
                      |+.||++||+++||||||||+|||++..  +   -.+||+|||+|+.+..+.        |.|||||++. ...|+.|+|
T Consensus       118 LA~alq~L~~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~~~a~tlcGSplYMAPEV~~-~~~YdAKAD  196 (429)
T KOG0595|consen  118 LASALQFLHENNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQPGSMAETLCGSPLYMAPEVIM-SQQYDAKAD  196 (429)
T ss_pred             HHHHHHHHHHCCeeeccCCcceEEeccCCCCCCCceEEecccchhhhCCchhHHHHhhCCccccCHHHHH-hccccchhh
Confidence            9999999999999999999999999872  1   469999999999888654        8999999655 556999999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcc-cccCCCHHHHHHHHHhhhcCc
Q 005958          307 MRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQ-ILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       307 IWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      +||+|+|+|+|++|++||.            ...+.++..+++..-        ...+ .....++...+|+...|+.+|
T Consensus       197 LWSiG~Ilyq~l~g~~Pf~------------a~t~~eL~~~~~k~~--------~~~~~~~~~~s~~~~~Ll~~ll~~~~  256 (429)
T KOG0595|consen  197 LWSIGTILYQCLTGKPPFD------------AETPKELLLYIKKGN--------EIVPVLPAELSNPLRELLISLLQRNP  256 (429)
T ss_pred             HHHHHHHHHHHHhCCCCcc------------ccCHHHHHHHHhccc--------cccCchhhhccCchhhhhhHHHhcCc
Confidence            9999999999999999995            222333333332211        1111 223456677899999999999


Q ss_pred             CCCCCHHHHHcCCCCCCCC
Q 005958          386 SKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       386 ~kRpSa~elL~HPwf~~~~  404 (667)
                      ..|.+..+-+.|++++...
T Consensus       257 ~~~~~~~~~~~~~~l~~~p  275 (429)
T KOG0595|consen  257 KDRISFEDFFDHPFLAANP  275 (429)
T ss_pred             cccCchHHhhhhhhcccCc
Confidence            9999999999999998765

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-47  Score=382.06  Aligned_cols=253  Identities=20%  Similarity=0.295  Sum_probs=219.3

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-----HHHHHHHHHHHHHHhhccCCCCCc
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-----QRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-----~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      ..+++|++++.||.|+||    .|.+++++.     +|..||+|++.+.+.     .+...+|..+|+.+.      ||+
T Consensus        41 ~~l~dfe~~~tlGtGSFG----rV~LVr~k~-----~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~------~PF  105 (355)
T KOG0616|consen   41 YSLQDFERLKTLGTGSFG----RVHLVREKH-----SGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVS------HPF  105 (355)
T ss_pred             cchhhhhheeeeccCccc----eEEEEEEcc-----CCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhcc------Cce
Confidence            678999999999999999    999999998     899999999987432     345689999999995      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      ++++++.+.     +.+++||||| |.+||.|+.++++.+         +|+|                    ..++.|+
T Consensus       106 lv~l~~t~~-----d~~~lymvme-yv~GGElFS~Lrk~~---------rF~e--------------------~~arFYA  150 (355)
T KOG0616|consen  106 LVKLYGTFK-----DNSNLYMVME-YVPGGELFSYLRKSG---------RFSE--------------------PHARFYA  150 (355)
T ss_pred             eEEEEEeec-----cCCeEEEEEe-ccCCccHHHHHHhcC---------CCCc--------------------hhHHHHH
Confidence            999999999     8899999999 999999999999876         6776                    4568999


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC------CCCCCCcccccCCCCCCchhhHHHHH
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED------GPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      .||+.||+|||+++|++|||||||||++. +|++||+|||+|+.....      .|.|+|||+ +...+|+.++|+||||
T Consensus       151 AeivlAleylH~~~iiYRDLKPENiLlD~-~G~iKitDFGFAK~v~~rT~TlCGTPeYLAPEi-i~sk~ynkavDWWalG  228 (355)
T KOG0616|consen  151 AEIVLALEYLHSLDIIYRDLKPENLLLDQ-NGHIKITDFGFAKRVSGRTWTLCGTPEYLAPEI-IQSKGYNKAVDWWALG  228 (355)
T ss_pred             HHHHHHHHHHHhcCeeeccCChHHeeecc-CCcEEEEeccceEEecCcEEEecCCccccChHH-hhcCCCCcchhHHHHH
Confidence            99999999999999999999999999999 999999999999987654      499999995 4556699999999999


Q ss_pred             HHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC--
Q 005958          312 FMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI--  389 (667)
Q Consensus       312 viLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp--  389 (667)
                      |++|||+.|.+||.            +..+.   ....+++..       .+.++...+++++|||+++|+.|-.+|.  
T Consensus       229 VLIYEMlaG~pPF~------------~~~~~---~iY~KI~~~-------~v~fP~~fs~~~kdLl~~LL~vD~t~R~gn  286 (355)
T KOG0616|consen  229 VLIYEMLAGYPPFY------------DDNPI---QIYEKILEG-------KVKFPSYFSSDAKDLLKKLLQVDLTKRFGN  286 (355)
T ss_pred             HHHHHHHcCCCCCc------------CCChH---HHHHHHHhC-------cccCCcccCHHHHHHHHHHHhhhhHhhhcC
Confidence            99999999999994            22232   223334433       3445677899999999999999999994  


Q ss_pred             ---CHHHHHcCCCCCCCCCCCCC
Q 005958          390 ---SCLDALRHPFLCGPRWRVDP  409 (667)
Q Consensus       390 ---Sa~elL~HPwf~~~~~~~~~  409 (667)
                         ...++.+||||+++.|....
T Consensus       287 lknG~~dIk~H~wF~~v~W~~i~  309 (355)
T KOG0616|consen  287 LKNGVEDIKNHPWFKGVDWEAIL  309 (355)
T ss_pred             cCCCccccccCcccccccHHHHh
Confidence               56899999999999985443

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-46  Score=404.87  Aligned_cols=248  Identities=21%  Similarity=0.313  Sum_probs=210.3

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-------hhHHHHHHHHHHHHHHhhccCCCC
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-------QAQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-------~~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      ...+.|++++.||+|+||    .|+.|.+..     ++..||+|++.+.       ...+.+.+|+.+++.++     .|
T Consensus        14 ~~~g~y~~~~~lG~Gsfg----kV~~a~~~~-----t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~-----~H   79 (370)
T KOG0583|consen   14 LSIGKYELGRTLGSGSFG----KVKLAKHRL-----TGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLR-----SH   79 (370)
T ss_pred             cccCceeeeeeecCCCCe----eEEEeeecc-----CCCeEEEEEechhcccccccccchhhHHHHHHHHHhc-----cC
Confidence            456899999999999999    999999998     8899999987763       23456679999999996     59


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      |||+++++++.     ....+|+||| ||.||+|+++|.+.+         ++.|.+                    ++.
T Consensus        80 pnI~~l~ev~~-----t~~~~~ivmE-y~~gGdL~~~i~~~g---------~l~E~~--------------------ar~  124 (370)
T KOG0583|consen   80 PNIIRLLEVFA-----TPTKIYIVME-YCSGGDLFDYIVNKG---------RLKEDE--------------------ARK  124 (370)
T ss_pred             CCEeEEEEEEe-----cCCeEEEEEE-ecCCccHHHHHHHcC---------CCChHH--------------------HHH
Confidence            99999999999     6677999999 999999999999865         777755                    567


Q ss_pred             HHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCC-CeEEEeeeccccccc-CC--------CCCCCCcccccCCCCC-Cch
Q 005958          236 LMRDLLIGVNYLHSHGLAHTELRLENVHISPVD-RHIKVGILGNAADFY-ED--------GPNNSSPDSNMDRRQM-MIA  304 (667)
Q Consensus       236 i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~-~~vKL~DFGlA~~~~-~~--------~~~Y~APE~l~~~~~y-s~k  304 (667)
                      +++||+.|++|||++||+||||||||||++. + +++||+|||++.... .+        .+.|+|||++.+...| +.+
T Consensus       125 ~F~Qlisav~y~H~~gi~HRDLK~ENilld~-~~~~~Kl~DFG~s~~~~~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~  203 (370)
T KOG0583|consen  125 YFRQLISAVAYCHSRGIVHRDLKPENILLDG-NEGNLKLSDFGLSAISPGEDGLLKTFCGSPAYAAPEVLSGKGTYSGKA  203 (370)
T ss_pred             HHHHHHHHHHHHHhCCEeeCCCCHHHEEecC-CCCCEEEeccccccccCCCCCcccCCCCCcccCCHHHhCCCCCcCCch
Confidence            9999999999999999999999999999999 6 999999999998772 22        2899999977776635 689


Q ss_pred             hhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCC-CHHHHHHHHHhhhc
Q 005958          305 FDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRN-WGAGWNLLSLLLAT  383 (667)
Q Consensus       305 sDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-s~e~~dLI~~~L~~  383 (667)
                      +||||+||+||.|++|+.||.+               .........+...       .+.++..+ |+++++||.+||..
T Consensus       204 aDvWS~GViLy~ml~G~~PF~d---------------~~~~~l~~ki~~~-------~~~~p~~~~S~~~~~Li~~mL~~  261 (370)
T KOG0583|consen  204 ADVWSLGVILYVLLCGRLPFDD---------------SNVPNLYRKIRKG-------EFKIPSYLLSPEARSLIEKMLVP  261 (370)
T ss_pred             hhhhhhHHHHHHHHhCCCCCCC---------------ccHHHHHHHHhcC-------CccCCCCcCCHHHHHHHHHHcCC
Confidence            9999999999999999999963               1122222223222       23344455 99999999999999


Q ss_pred             CcCCCCCHHHHHcCCCCCC
Q 005958          384 KPSKRISCLDALRHPFLCG  402 (667)
Q Consensus       384 DP~kRpSa~elL~HPwf~~  402 (667)
                      ||.+|+|+.++++||||+.
T Consensus       262 ~P~~R~t~~~i~~h~w~~~  280 (370)
T KOG0583|consen  262 DPSTRITLLEILEHPWFQK  280 (370)
T ss_pred             CcccCCCHHHHhhChhhcc
Confidence            9999999999999999997

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=5.2e-47  Score=391.76  Aligned_cols=277  Identities=26%  Similarity=0.353  Sum_probs=226.1

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh----HHHHHHHHHHHHHHhhccCCCCCc-ce
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA----QRRGRRAIEVLKKLVRRRLMYHSY-SM  159 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~----~~~~~rEi~iL~~L~~~~~~~Hpn-Iv  159 (667)
                      +..|+.+++||+|+||    +||+|+++.     +|+.||+|++.....    .....||+.+|++|+      |+| |+
T Consensus        10 ~~~~~~~eklGeGtyg----~Vykar~~~-----~g~~VALKkirl~~~~EG~P~taiREisllk~L~------~~~~iv   74 (323)
T KOG0594|consen   10 MFDYEKVEKLGEGTYG----VVYKARSKR-----TGKFVALKKIRLEFEEEGVPSTAIREISLLKRLS------HANHIV   74 (323)
T ss_pred             HHHHHHHHHhCCCCce----EEEEEEEec-----CCCEEEEEEEeccccccCCCchhhHHHHHHHHhC------CCcceE
Confidence            6778889999999999    999999998     899999999986543    345699999999996      999 99


Q ss_pred             EEEEEEEecc-cCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          160 QVHGYVSSHT-TSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       160 ~l~~~~~~~~-~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      .+++++.... ......+++|+| |++. ||.+++.......                         ..++...|+.+++
T Consensus        75 ~L~dv~~~~~~~~~~~~l~lvfe-~~d~-DL~~ymd~~~~~~-------------------------~g~~~~~ik~~m~  127 (323)
T KOG0594|consen   75 RLHDVIHTSNNHRGIGKLYLVFE-FLDR-DLKKYMDSLPKKP-------------------------QGLPPRLIKSFMR  127 (323)
T ss_pred             EEEeeeeecccccccceEEEEEE-eecc-cHHHHHHhccccc-------------------------cCCCHHHHHHHHH
Confidence            9999998321 112238999999 9999 9999998754110                         1122367999999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC---------CCCCCcccccCCCCCCchhhHHH
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG---------PNNSSPDSNMDRRQMMIAFDMRC  309 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~---------~~Y~APE~l~~~~~ys~ksDIWS  309 (667)
                      ||+.||+|||++||+||||||+||||++ +|.+||+|||+|+.+..+.         .-|+|||++++...|+..+||||
T Consensus       128 Qll~gl~~~H~~~IlHRDLKPQNlLi~~-~G~lKlaDFGlAra~~ip~~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs  206 (323)
T KOG0594|consen  128 QLLRGLAFLHSHGILHRDLKPQNLLISS-SGVLKLADFGLARAFSIPMRTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWS  206 (323)
T ss_pred             HHHHHHHHHHhCCeecccCCcceEEECC-CCcEeeeccchHHHhcCCcccccccEEEeeccCHHHhcCCCcCCCCcchHh
Confidence            9999999999999999999999999999 9999999999999777443         35889999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCh---hhhhhhhhhhccCCChhHHHHHHHHHhccCCCC-----CCCCcccccCCCHHHHHHHHHhh
Q 005958          310 VGFMMAKMVLRELMDP---LIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSS-----GNTGFQILDRNWGAGWNLLSLLL  381 (667)
Q Consensus       310 LGviLyemltG~~PF~---~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~s~e~~dLI~~~L  381 (667)
                      +|||++||+++++.|+   +.+++..+|...|++.++...-+..........     ...-....+..++++.|++.+||
T Consensus       207 ~GcIfaEm~~~~~LFpG~se~~ql~~If~~lGtP~e~~Wp~v~~~~~~k~~f~~~~~~~~l~~~~~~~~~~~~dll~~~L  286 (323)
T KOG0594|consen  207 LGCIFAEMFTRRPLFPGDSEIDQLFRIFRLLGTPNEKDWPGVSSLPDYKAPFPKWPGPKDLSSILPKLDPDGIELLSKLL  286 (323)
T ss_pred             HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHcCCCCccCCCCccccccccccCcCCCCccchHHhccccCccHHHHHHHHh
Confidence            9999999999999999   478899999999998764332221111111011     11112344556689999999999


Q ss_pred             hcCcCCCCCHHHHHcCCCCCCCC
Q 005958          382 ATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       382 ~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      +++|.+|.||+.+|.||||....
T Consensus       287 ~y~p~~R~Sa~~al~h~yf~~~~  309 (323)
T KOG0594|consen  287 QYDPAKRISAKGALTHPYFSELP  309 (323)
T ss_pred             ccCcccCcCHHHHhcChhhcccc
Confidence            99999999999999999999976

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=9.6e-47  Score=410.87  Aligned_cols=248  Identities=22%  Similarity=0.314  Sum_probs=217.5

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-----hhHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-----QAQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-----~~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      ..+-|++++.||.|+-|    .|.+|+|..     ||+.+|||++.+.     .....+.+||-||+.+.      ||||
T Consensus        10 tiGpwkLgkTLG~Gstg----~vrlakh~~-----TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~------HpnV   74 (786)
T KOG0588|consen   10 TIGPWKLGKTLGKGSTG----CVRLAKHAE-----TGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIE------HPNV   74 (786)
T ss_pred             cccceeccccccCCCCc----eehhhhccc-----ccceeEEEeeccccccccccccchhhhhHHHHHhc------CCCe
Confidence            35779999999999999    999999998     9999999999764     22345689999999995      9999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      +++|++|+     +..++|+|.| |+++|.|++++.+++         +|.|.+|                    +++++
T Consensus        75 l~LydVwe-----~~~~lylvlE-yv~gGELFdylv~kG---------~l~e~ea--------------------a~ff~  119 (786)
T KOG0588|consen   75 LRLYDVWE-----NKQHLYLVLE-YVPGGELFDYLVRKG---------PLPEREA--------------------AHFFR  119 (786)
T ss_pred             eeeeeeec-----cCceEEEEEE-ecCCchhHHHHHhhC---------CCCCHHH--------------------HHHHH
Confidence            99999999     8899999999 999999999999987         7777664                    56999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHH
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      ||+.|+.|||..+|+||||||+|+|++. .++|||+|||+|.....+        .|+|.|||++.+..+.+.++||||+
T Consensus       120 QIi~gv~yCH~~~icHRDLKpENlLLd~-~~nIKIADFGMAsLe~~gklLeTSCGSPHYA~PEIV~G~pYdG~~sDVWSC  198 (786)
T KOG0588|consen  120 QILDGVSYCHAFNICHRDLKPENLLLDV-KNNIKIADFGMASLEVPGKLLETSCGSPHYAAPEIVSGRPYDGRPSDVWSC  198 (786)
T ss_pred             HHHHHHHHHhhhcceeccCCchhhhhhc-ccCEeeeccceeecccCCccccccCCCcccCCchhhcCCCCCCCccccchh
Confidence            9999999999999999999999999999 666999999999765444        3999999988888888999999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      |||||.|++|+.||.               ...++..+.++..+       .+.++.++++++++||.+||..||++|+|
T Consensus       199 GVILfALLtG~LPFd---------------DdNir~LLlKV~~G-------~f~MPs~Is~eaQdLLr~ml~VDp~~RiT  256 (786)
T KOG0588|consen  199 GVILFALLTGKLPFD---------------DDNIRVLLLKVQRG-------VFEMPSNISSEAQDLLRRMLDVDPSTRIT  256 (786)
T ss_pred             HHHHHHHHhCCCCCC---------------CccHHHHHHHHHcC-------cccCCCcCCHHHHHHHHHHhccCcccccc
Confidence            999999999999994               22344444444333       45677899999999999999999999999


Q ss_pred             HHHHHcCCCCCCCC
Q 005958          391 CLDALRHPFLCGPR  404 (667)
Q Consensus       391 a~elL~HPwf~~~~  404 (667)
                      .+||++|||+.+..
T Consensus       257 ~~eI~kHP~l~g~~  270 (786)
T KOG0588|consen  257 TEEILKHPFLSGYT  270 (786)
T ss_pred             HHHHhhCchhhcCC
Confidence            99999999998754

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=100.00  E-value=9.9e-46  Score=406.06  Aligned_cols=274  Identities=20%  Similarity=0.234  Sum_probs=223.7

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYV  165 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~  165 (667)
                      +|++.+.||+|+||    .|.+|.+..     |++.||||+++... -.++...|+.+|..|+....-+--|||+++++|
T Consensus       187 rY~V~e~LGkGtFG----QVvk~~d~~-----T~e~VAIKIiKN~k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F  257 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFG----QVVKAYDHK-----TGEIVAIKIIKNKKRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYF  257 (586)
T ss_pred             EEEEEEEecccccc----eeEEEEecC-----CCcEEEEEeeccChHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeecc
Confidence            78999999999999    999999998     89999999998643 345678899999999743344456999999999


Q ss_pred             EecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHH
Q 005958          166 SSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVN  245 (667)
Q Consensus       166 ~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~  245 (667)
                      .     ..+++|||+| +++. +|+++|+.+++.                           ++++..|+.++.||+.||.
T Consensus       258 ~-----fr~HlciVfE-LL~~-NLYellK~n~f~---------------------------Glsl~~ir~~~~Qil~~L~  303 (586)
T KOG0667|consen  258 Y-----FRNHLCIVFE-LLST-NLYELLKNNKFR---------------------------GLSLPLVRKFAQQILTALL  303 (586)
T ss_pred             c-----cccceeeeeh-hhhh-hHHHHHHhcCCC---------------------------CCCHHHHHHHHHHHHHHHH
Confidence            9     8999999999 9999 999999987531                           2446789999999999999


Q ss_pred             HHHHCCCcccCCCCCcEEEcC-CCCeEEEeeecccccccCCC------CCCCCcccccCCCCCCchhhHHHHHHHHHHHH
Q 005958          246 YLHSHGLAHTELRLENVHISP-VDRHIKVGILGNAADFYEDG------PNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMV  318 (667)
Q Consensus       246 yLHs~gIvHrDLKPeNILl~~-~~~~vKL~DFGlA~~~~~~~------~~Y~APE~l~~~~~ys~ksDIWSLGviLyeml  318 (667)
                      +||+.||||+||||||||+.. ....|||+|||+|+......      .+|+|||++++. +|+.+.||||||||++||+
T Consensus       304 ~L~~l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~q~vytYiQSRfYRAPEVILGl-pY~~~IDmWSLGCIlAEL~  382 (586)
T KOG0667|consen  304 FLHELGIIHCDLKPENILLKDPKRSRIKVIDFGSSCFESQRVYTYIQSRFYRAPEVILGL-PYDTAIDMWSLGCILAELF  382 (586)
T ss_pred             HHHhCCeeeccCChhheeeccCCcCceeEEecccccccCCcceeeeeccccccchhhccC-CCCCccceeehhhhHHhHh
Confidence            999999999999999999976 23589999999998776543      789999977765 4999999999999999999


Q ss_pred             hCCCCCh---hhhhhhhhhhccCCChhHHHHHHHHHhccCCC-C----------------------------CCCCc---
Q 005958          319 LRELMDP---LIFTKFKSFLTKGIDPSCLREFLLQVLNRNSS-S----------------------------GNTGF---  363 (667)
Q Consensus       319 tG~~PF~---~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~-~----------------------------~~~~~---  363 (667)
                      +|.|+|+   +.+|+..+....|.++..+.+.-.+....... .                            .....   
T Consensus       383 tG~PLfpG~ne~DQl~~I~e~lG~Pp~~mL~~~~~~~kff~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~P~~  462 (586)
T KOG0667|consen  383 TGEPLFPGDNEYDQLARIIEVLGLPPPKMLDTAKKAHKFFTSLKGFPRLCVETSAPRGTKSPEVRKYYRKARLERRGPPG  462 (586)
T ss_pred             cCccccCCCCHHHHHHHHHHHhCCCCHHHHHhccccceehhccCCceeeeeeecccccccchhhhhhhhhhcccccCCCC
Confidence            9999999   47888999999999987765543221111000 0                            00000   


Q ss_pred             -----cccc-CCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          364 -----QILD-RNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       364 -----~~~~-~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                           .... .....+.|||.+||.+||.+|+|+.|+|+||||.+..
T Consensus       463 ~~~l~~~~~~~~~~~F~dflk~~L~~dP~~R~tp~qal~Hpfl~~~~  509 (586)
T KOG0667|consen  463 SRSLESGLPKADDKLFIDFLKRCLEWDPAERITPAQALNHPFLTGTS  509 (586)
T ss_pred             CcccchhcccccHHHHHHHHHHHhccCchhcCCHHHHhcCccccccc
Confidence                 0111 2234789999999999999999999999999999754

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=5.5e-46  Score=397.57  Aligned_cols=244  Identities=19%  Similarity=0.296  Sum_probs=213.0

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      |++|.+.+.||+|+||    +||+|+.+.     +.+.||||.+.+.    +..+.+.+|++|+++|+      |||||.
T Consensus         1 me~yhv~e~iG~Gsfg----~VYKgrrK~-----t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lk------Hpniv~   65 (808)
T KOG0597|consen    1 MEQYHVYEMIGEGSFG----RVYKGRRKY-----TIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLK------HPNIVE   65 (808)
T ss_pred             CcchhHHHHhcCCccc----eeeeccccc-----ceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcC------Ccchhh
Confidence            5789999999999999    999999998     8999999999863    33456799999999996      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      ++++|+     ...++|+|+| ||.| +|+.+|...+         .++|+                    .++.+++|+
T Consensus        66 m~esfE-----t~~~~~vVte-~a~g-~L~~il~~d~---------~lpEe--------------------~v~~~a~~L  109 (808)
T KOG0597|consen   66 MLESFE-----TSAHLWVVTE-YAVG-DLFTILEQDG---------KLPEE--------------------QVRAIAYDL  109 (808)
T ss_pred             HHHhhc-----ccceEEEEeh-hhhh-hHHHHHHhcc---------CCCHH--------------------HHHHHHHHH
Confidence            999999     8899999999 9999 9999999876         56664                    577899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      +.||.|||+++|+|||+||.|||+.. ++.+|+||||+|+....+         .|.||||| +....+|+..+|+||+|
T Consensus       110 VsaL~yLhs~rilhrd~kPqniLl~~-~~~~KlcdFg~Ar~m~~~t~vltsikGtPlYmAPE-lv~e~pyd~~sDlWslG  187 (808)
T KOG0597|consen  110 VSALYYLHSNRILHRDMKPQNILLEK-GGTLKLCDFGLARAMSTNTSVLTSIKGTPLYMAPE-LVEEQPYDHTSDLWSLG  187 (808)
T ss_pred             HHHHHHHHhcCcccccCCcceeeecC-CCceeechhhhhhhcccCceeeeeccCcccccCHH-HHcCCCccchhhHHHHH
Confidence            99999999999999999999999999 999999999999977644         49999999 45577899999999999


Q ss_pred             HHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH
Q 005958          312 FMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC  391 (667)
Q Consensus       312 viLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa  391 (667)
                      ||+|||++|+|||-               ...+.+.+..+...+.+       .+...+.++++||..+|.+||.+|+|.
T Consensus       188 cilYE~~~G~PPF~---------------a~si~~Lv~~I~~d~v~-------~p~~~S~~f~nfl~gLL~kdP~~RltW  245 (808)
T KOG0597|consen  188 CILYELYVGQPPFY---------------ARSITQLVKSILKDPVK-------PPSTASSSFVNFLQGLLIKDPAQRLTW  245 (808)
T ss_pred             HHHHHHhcCCCCch---------------HHHHHHHHHHHhcCCCC-------CcccccHHHHHHHHHHhhcChhhcccH
Confidence            99999999999994               22234444555544333       234788999999999999999999999


Q ss_pred             HHHHcCCCCCCC
Q 005958          392 LDALRHPFLCGP  403 (667)
Q Consensus       392 ~elL~HPwf~~~  403 (667)
                      .+++.|||+++.
T Consensus       246 ~~Ll~HpF~k~~  257 (808)
T KOG0597|consen  246 TDLLGHPFWKGK  257 (808)
T ss_pred             HHHhcChHHhhh
Confidence            999999999863

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=6.5e-47  Score=370.31  Aligned_cols=251  Identities=18%  Similarity=0.262  Sum_probs=211.6

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      -+.|++.+.||+|.|+    +||++.+..     +|+.+|+|+++..    ...+.+.+|+.|-+.|+      |||||+
T Consensus        10 ~d~y~l~e~igkG~FS----vVrRc~~~~-----tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~Lq------HP~Ivr   74 (355)
T KOG0033|consen   10 SDNYDVKEELGKGAFS----VVRRCVHKT-----TGLEFAAKIINTKKLSARDFQKLEREARICRKLQ------HPNIVR   74 (355)
T ss_pred             chhhhHHHHHccCchH----HHHHHHhcc-----chHHHHHHHhhhhhhccccHHHHHHHHHHHHhcC------CCcEee
Confidence            4789999999999999    999999998     8999999998752    24467899999999996      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++.+.     ..+..|||+| ++.||+|..-|..+.         -++|                    ..+-++++||
T Consensus        75 L~~ti~-----~~~~~ylvFe-~m~G~dl~~eIV~R~---------~ySE--------------------a~aSH~~rQi  119 (355)
T KOG0033|consen   75 LHDSIQ-----EESFHYLVFD-LVTGGELFEDIVARE---------FYSE--------------------ADASHCIQQI  119 (355)
T ss_pred             hhhhhc-----ccceeEEEEe-cccchHHHHHHHHHH---------HHHH--------------------HHHHHHHHHH
Confidence            999998     8899999999 999999998776642         4555                    4567899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCC--CCeEEEeeecccccccCCC--------CCCCCcccccCCCCCCchhhHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPV--DRHIKVGILGNAADFYEDG--------PNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~--~~~vKL~DFGlA~~~~~~~--------~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      ++||+|+|.+||||||+||+|+|+.++  ..-+||+|||+|..+..+.        |.||||| +....+|+..+|||+.
T Consensus       120 Leal~yCH~n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~~g~~~~G~~GtP~fmaPE-vvrkdpy~kpvDiW~c  198 (355)
T KOG0033|consen  120 LEALAYCHSNGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVNDGEAWHGFAGTPGYLSPE-VLKKDPYSKPVDIWAC  198 (355)
T ss_pred             HHHHHHHHhcCceeccCChhheeeeeccCCCceeecccceEEEeCCccccccccCCCcccCHH-HhhcCCCCCcchhhhh
Confidence            999999999999999999999999763  3469999999999887543        8999999 5566779999999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      |||||-|+.|.+||.            |.+...+.+.+.   ......   .-+.++.+++++++||++||..||.+|+|
T Consensus       199 GViLfiLL~G~~PF~------------~~~~~rlye~I~---~g~yd~---~~~~w~~is~~Ak~LvrrML~~dP~kRIt  260 (355)
T KOG0033|consen  199 GVILYILLVGYPPFW------------DEDQHRLYEQIK---AGAYDY---PSPEWDTVTPEAKSLIRRMLTVNPKKRIT  260 (355)
T ss_pred             hHHHHHHHhCCCCCC------------CccHHHHHHHHh---ccccCC---CCcccCcCCHHHHHHHHHHhccChhhhcc
Confidence            999999999999996            333333433332   222111   12357889999999999999999999999


Q ss_pred             HHHHHcCCCCCCCC
Q 005958          391 CLDALRHPFLCGPR  404 (667)
Q Consensus       391 a~elL~HPwf~~~~  404 (667)
                      +.|+|+|||+++-.
T Consensus       261 a~EAL~HpWi~~r~  274 (355)
T KOG0033|consen  261 ADEALKHPWICNRE  274 (355)
T ss_pred             HHHHhCCchhcchH
Confidence            99999999998844

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-44  Score=376.71  Aligned_cols=263  Identities=18%  Similarity=0.244  Sum_probs=213.2

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh---HHHHHHHHHHHHHHhhccCCCCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA---QRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~---~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      .+....++|++.+.||.|..+    +||+|+...     +++.||||++..++.   -+.+.+|++.|+.+      +||
T Consensus        20 ~~p~n~~~YeL~e~IG~G~sa----~V~~A~c~p-----~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~------~HP   84 (516)
T KOG0582|consen   20 EFPLNAKDYELQEVIGVGASA----VVYLARCIP-----TNEVVAIKIINLEKCNNDLDALRKEVQTMSLI------DHP   84 (516)
T ss_pred             cCCCCccceeEEEEEecccee----Eeeeeeecc-----cCCEEEEEEeehhhhhhhHHHHHHHHHHhhhc------CCC
Confidence            344567899999999999999    999999998     889999999986443   35679999999999      599


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||++++..|.     .+..+|+||+ ||.+|++.++|+..-  +.     .|+|                    ..|+.|
T Consensus        85 NIv~~~~sFv-----v~~~LWvVmp-fMa~GS~ldIik~~~--~~-----Gl~E--------------------~~Ia~i  131 (516)
T KOG0582|consen   85 NIVTYHCSFV-----VDSELWVVMP-FMAGGSLLDIIKTYY--PD-----GLEE--------------------ASIATI  131 (516)
T ss_pred             CcceEEEEEE-----ecceeEEeeh-hhcCCcHHHHHHHHc--cc-----cccH--------------------HHHHHH
Confidence            9999999999     8899999999 999999999998742  11     3444                    568999


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeeccccccc-------------CCCCCCCCccc-ccCCCCCC
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFY-------------EDGPNNSSPDS-NMDRRQMM  302 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~-------------~~~~~Y~APE~-l~~~~~ys  302 (667)
                      ++++++||.|||.+|.||||||+.||||+. +|.|||+|||.+..+.             .+.++|||||+ +.....|+
T Consensus       132 Lre~LkaL~YLH~~G~IHRdvKAgnILi~~-dG~VkLadFgvsa~l~~~G~R~~~rf~tfvgtp~wmAPEvl~q~~~GYd  210 (516)
T KOG0582|consen  132 LREVLKALDYLHQNGHIHRDVKAGNILIDS-DGTVKLADFGVSASLFDSGDRQVTRFNTFVGTPCWMAPEVLMQQLHGYD  210 (516)
T ss_pred             HHHHHHHHHHHHhcCceecccccccEEEcC-CCcEEEcCceeeeeecccCceeeEeeccccCcccccChHHhhhcccCcc
Confidence            999999999999999999999999999999 9999999999875432             23389999998 44667899


Q ss_pred             chhhHHHHHHHHHHHHhCCCCChhhhhhhhhh-hccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhh
Q 005958          303 IAFDMRCVGFMMAKMVLRELMDPLIFTKFKSF-LTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLL  381 (667)
Q Consensus       303 ~ksDIWSLGviLyemltG~~PF~~~~~~~~~~-~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L  381 (667)
                      .|+||||||++..||.+|..||.....+-... ...|.++.-.             ............+..++.+|..||
T Consensus       211 fKaDIwSfGITA~ELA~G~aPf~k~pPmkvLl~tLqn~pp~~~-------------t~~~~~d~~k~~~ksf~e~i~~CL  277 (516)
T KOG0582|consen  211 FKADIWSFGITACELAHGHAPFSKYPPMKVLLLTLQNDPPTLL-------------TSGLDKDEDKKFSKSFREMIALCL  277 (516)
T ss_pred             chhhhhhhhHHHHHHhcCCCCcccCChHHHHHHHhcCCCCCcc-------------cccCChHHhhhhcHHHHHHHHHHh
Confidence            99999999999999999999997443222111 1111111000             001112233456679999999999


Q ss_pred             hcCcCCCCCHHHHHcCCCCCCCC
Q 005958          382 ATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       382 ~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      ++||++||||+++|+|+||+...
T Consensus       278 ~kDP~kRptAskLlkh~FFk~~k  300 (516)
T KOG0582|consen  278 VKDPSKRPTASKLLKHAFFKKAK  300 (516)
T ss_pred             hcCcccCCCHHHHhccHHHhhcc
Confidence            99999999999999999999865

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-44  Score=394.74  Aligned_cols=254  Identities=19%  Similarity=0.315  Sum_probs=216.4

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-----hhHHHHHHHHHHHHHHhhccCCCC
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-----QAQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-----~~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      ..+.+++|.++++||+|+||    +|++|..+.     +++.||||++++.     .+.+..+.|..|+....     .|
T Consensus       363 ~~~~l~~F~~l~vLGkGsFG----kV~lae~k~-----~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~-----~H  428 (694)
T KOG0694|consen  363 GPLTLDDFRLLAVLGRGSFG----KVLLAELKG-----TNEYYAIKVLKKGDILQRDEVESLMCEKRIFELAN-----RH  428 (694)
T ss_pred             CcccccceEEEEEeccCcCc----eEEEEEEcC-----CCcEEEEEEeeccceeccccHHHHHHHHHHHHHhc-----cC
Confidence            46788999999999999999    999999998     8999999999973     34466789999999986     69


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      |+++.++..|+     ...++|+||| |+.|||+..+++..          .|+|.+                    ++.
T Consensus       429 PFL~~L~~~fQ-----T~~~l~fvme-y~~Ggdm~~~~~~~----------~F~e~r--------------------arf  472 (694)
T KOG0694|consen  429 PFLVNLFSCFQ-----TKEHLFFVME-YVAGGDLMHHIHTD----------VFSEPR--------------------ARF  472 (694)
T ss_pred             CeEeecccccc-----cCCeEEEEEE-ecCCCcEEEEEecc----------cccHHH--------------------HHH
Confidence            99999999999     8899999999 99999966655532          677754                    688


Q ss_pred             HHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhh
Q 005958          236 LMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       236 i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksD  306 (667)
                      |+..|+.||+|||++|||+||||.+|||++. +|++||+|||+|+..-.         ++|.|||||+ +....|+.++|
T Consensus       473 yaAev~l~L~fLH~~~IIYRDlKLdNiLLD~-eGh~kiADFGlcKe~m~~g~~TsTfCGTpey~aPEi-l~e~~Yt~aVD  550 (694)
T KOG0694|consen  473 YAAEVVLGLQFLHENGIIYRDLKLDNLLLDT-EGHVKIADFGLCKEGMGQGDRTSTFCGTPEFLAPEV-LTEQSYTRAVD  550 (694)
T ss_pred             HHHHHHHHHHHHHhcCceeeecchhheEEcc-cCcEEecccccccccCCCCCccccccCChhhcChhh-hccCcccchhh
Confidence            9999999999999999999999999999999 99999999999986542         2289999995 55566999999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          307 MRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       307 IWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      +|||||+||||+.|++||+            |.+.+++.+.+.   ...       ...+..+|.++.++|+++|..||+
T Consensus       551 WW~lGVLlyeML~Gq~PF~------------gddEee~FdsI~---~d~-------~~yP~~ls~ea~~il~~ll~k~p~  608 (694)
T KOG0694|consen  551 WWGLGVLLYEMLVGESPFP------------GDDEEEVFDSIV---NDE-------VRYPRFLSKEAIAIMRRLLRKNPE  608 (694)
T ss_pred             HHHHHHHHHHHHcCCCCCC------------CCCHHHHHHHHh---cCC-------CCCCCcccHHHHHHHHHHhccCcc
Confidence            9999999999999999996            555555544433   221       223346789999999999999999


Q ss_pred             CCCC-----HHHHHcCCCCCCCCCCCC
Q 005958          387 KRIS-----CLDALRHPFLCGPRWRVD  408 (667)
Q Consensus       387 kRpS-----a~elL~HPwf~~~~~~~~  408 (667)
                      +|..     +++|.+||||+.++|...
T Consensus       609 kRLG~~e~d~~~i~~hpFFr~i~w~~L  635 (694)
T KOG0694|consen  609 KRLGSGERDAEDIKKHPFFRSIDWDDL  635 (694)
T ss_pred             cccCCCCCCchhhhhCCccccCCHHHH
Confidence            9996     588999999999998543

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-45  Score=397.54  Aligned_cols=246  Identities=20%  Similarity=0.258  Sum_probs=209.9

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--hHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      ..|....+||+|+.|    .||.|+...     +++.||||.+....  ..+-+.+|+.+|+.++      |+|||.+++
T Consensus       273 ~~y~~~~kigqgaSG----~vy~A~~~~-----~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~------H~NiVnfl~  337 (550)
T KOG0578|consen  273 SKYTDFKKIGQGATG----GVYVARKIS-----TKQEVAIKRMDLRKQPKKELLLNEILVMRDLH------HPNIVNFLD  337 (550)
T ss_pred             hhhcchhhhcccccc----ceeeeeecc-----CCceEEEEEEEeccCCchhhhHHHHHHHHhcc------chHHHHHHH
Confidence            568889999999999    999999998     88999999998633  3345699999999995      999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      .|.     ..+.+|+||| |++||+|.+.+...          .++|                    .+|+.|++++++|
T Consensus       338 Syl-----v~deLWVVME-ym~ggsLTDvVt~~----------~~~E--------------------~qIA~Icre~l~a  381 (550)
T KOG0578|consen  338 SYL-----VGDELWVVME-YMEGGSLTDVVTKT----------RMTE--------------------GQIAAICREILQG  381 (550)
T ss_pred             Hhc-----ccceeEEEEe-ecCCCchhhhhhcc----------cccH--------------------HHHHHHHHHHHHH
Confidence            998     6789999999 99999999999864          4666                    5689999999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC---------CCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG---------PNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~---------~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      |+|||.+||+|||||.+|||++. +|.+||+|||+|..+....         |+||||| +..+..|++++||||||+++
T Consensus       382 L~fLH~~gIiHrDIKSDnILL~~-~g~vKltDFGFcaqi~~~~~KR~TmVGTPYWMAPE-Vvtrk~YG~KVDIWSLGIMa  459 (550)
T KOG0578|consen  382 LKFLHARGIIHRDIKSDNILLTM-DGSVKLTDFGFCAQISEEQSKRSTMVGTPYWMAPE-VVTRKPYGPKVDIWSLGIMA  459 (550)
T ss_pred             HHHHHhcceeeeccccceeEecc-CCcEEEeeeeeeeccccccCccccccCCCCccchh-hhhhcccCccccchhhhhHH
Confidence            99999999999999999999999 9999999999998776543         8999999 56677899999999999999


Q ss_pred             HHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHH
Q 005958          315 AKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDA  394 (667)
Q Consensus       315 yemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~el  394 (667)
                      +||+-|+|||-.           ..+-..+.-+    .    ..+...+...+.+|++++|||.+||+.||++|++|.|+
T Consensus       460 IEMveGEPPYln-----------E~PlrAlyLI----a----~ng~P~lk~~~klS~~~kdFL~~cL~~dv~~RasA~eL  520 (550)
T KOG0578|consen  460 IEMVEGEPPYLN-----------ENPLRALYLI----A----TNGTPKLKNPEKLSPELKDFLDRCLVVDVEQRASAKEL  520 (550)
T ss_pred             HHHhcCCCCccC-----------CChHHHHHHH----h----hcCCCCcCCccccCHHHHHHHHHHhhcchhcCCCHHHH
Confidence            999999999831           1111111111    1    11223456677899999999999999999999999999


Q ss_pred             HcCCCCCCC
Q 005958          395 LRHPFLCGP  403 (667)
Q Consensus       395 L~HPwf~~~  403 (667)
                      |+||||+..
T Consensus       521 L~HpFl~~a  529 (550)
T KOG0578|consen  521 LEHPFLKMA  529 (550)
T ss_pred             hcChhhhhc
Confidence            999999553

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=9.5e-44  Score=372.33  Aligned_cols=266  Identities=23%  Similarity=0.267  Sum_probs=206.3

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      .+++|++.+.||.|+||    .||+|++..     +++.||+|+++...   ......+|+.+++.++      ||||++
T Consensus         3 ~~~~y~~~~~lg~G~~g----~Vy~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~------h~niv~   67 (288)
T cd07871           3 KLETYVKLDKLGEGTYA----TVFKGRSKL-----TENLVALKEIRLEHEEGAPCTAIREVSLLKNLK------HANIVT   67 (288)
T ss_pred             ccccceEeeEEecCCCE----EEEEEEECC-----CCCEEEEEEecccccCCcchhHHHHHHHHHhCC------CCCEee
Confidence            46889999999999999    999999987     78999999987432   2345678999999994      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     ..+..++||| |+++ +|.+++...+.        .+++                    ..++.++.||
T Consensus        68 ~~~~~~-----~~~~~~lv~e-~~~~-~l~~~l~~~~~--------~~~~--------------------~~~~~~~~qi  112 (288)
T cd07871          68 LHDIIH-----TERCLTLVFE-YLDS-DLKQYLDNCGN--------LMSM--------------------HNVKIFMFQL  112 (288)
T ss_pred             EEEEEc-----CCCeEEEEEe-CCCc-CHHHHHHhcCC--------CCCH--------------------HHHHHHHHHH
Confidence            999998     7789999999 9987 99999876431        2333                    4578899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      +.||+|||++||+||||||+|||++. ++.+||+|||++......         .+.|+|||++.+...++.++||||+|
T Consensus       113 ~~aL~~LH~~~ivH~dlkp~Nil~~~-~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG  191 (288)
T cd07871         113 LRGLSYCHKRKILHRDLKPQNLLINE-KGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVG  191 (288)
T ss_pred             HHHHHHHHhCCcccCCCCHHHEEECC-CCCEEECcCcceeeccCCCccccCceecccccChHHhcCCcccCcHHHHHHHH
Confidence            99999999999999999999999998 899999999998754321         36799999777777799999999999


Q ss_pred             HHHHHHHhCCCCChhh---hhhhhhhhccCCChhHHHHHHHH---HhccCCC--CCCCCcccccCCCHHHHHHHHHhhhc
Q 005958          312 FMMAKMVLRELMDPLI---FTKFKSFLTKGIDPSCLREFLLQ---VLNRNSS--SGNTGFQILDRNWGAGWNLLSLLLAT  383 (667)
Q Consensus       312 viLyemltG~~PF~~~---~~~~~~~~~~g~~~~~l~~~~~~---~~~~~~~--~~~~~~~~~~~~s~e~~dLI~~~L~~  383 (667)
                      |++|+|++|++||...   .....++...+.++......+..   ......+  .........+..+++++|||.+||++
T Consensus       192 ~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~  271 (288)
T cd07871         192 CILYEMATGRPMFPGSTVKEELHLIFRLLGTPTEETWPGITSNEEFRSYLFPQYRAQPLINHAPRLDTDGIDLLSSLLLY  271 (288)
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhccccchhhhccccCccCCCchHHhCCCCCHHHHHHHHHhcCc
Confidence            9999999999999732   22222333334333322111100   0000000  00111123356788999999999999


Q ss_pred             CcCCCCCHHHHHcCCCC
Q 005958          384 KPSKRISCLDALRHPFL  400 (667)
Q Consensus       384 DP~kRpSa~elL~HPwf  400 (667)
                      ||.+|||++|+|+||||
T Consensus       272 dp~~R~t~~~~l~hp~f  288 (288)
T cd07871         272 ETKSRISAEAALRHSYF  288 (288)
T ss_pred             CcccCCCHHHHhcCCCC
Confidence            99999999999999998

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-44  Score=380.14  Aligned_cols=255  Identities=20%  Similarity=0.270  Sum_probs=207.7

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh----------------HHHHHHHHHHH
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA----------------QRRGRRAIEVL  144 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~----------------~~~~~rEi~iL  144 (667)
                      .+..+++|++++.||+|.||    .|.+|++..     +++.||||++.+...                .+.+.+||.||
T Consensus        92 ~~k~lNqy~l~~eiG~G~yG----kVkLar~~~-----~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIail  162 (576)
T KOG0585|consen   92 DRKQLNQYELIKEIGSGQYG----KVKLARDEV-----DGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAIL  162 (576)
T ss_pred             cceehhheehhhhhcCCccc----eEEEEeecC-----CCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHH
Confidence            34567999999999999999    999999998     899999999986321                14568999999


Q ss_pred             HHHhhccCCCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCC
Q 005958          145 KKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGP  224 (667)
Q Consensus       145 ~~L~~~~~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~  224 (667)
                      ++|.      |||||+|+++..++   ..+.+|||+| ||..|.+...-...         ..|+|              
T Consensus       163 Kkl~------H~nVV~LiEvLDDP---~s~~~YlVle-y~s~G~v~w~p~d~---------~els~--------------  209 (576)
T KOG0585|consen  163 KKLH------HPNVVKLIEVLDDP---ESDKLYLVLE-YCSKGEVKWCPPDK---------PELSE--------------  209 (576)
T ss_pred             HhcC------CcCeeEEEEeecCc---ccCceEEEEE-eccCCccccCCCCc---------ccccH--------------
Confidence            9995      99999999999877   8899999999 99987765321110         01555              


Q ss_pred             CccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC--------------CCCCCC
Q 005958          225 AASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE--------------DGPNNS  290 (667)
Q Consensus       225 ~~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~--------------~~~~Y~  290 (667)
                            .+++.|+++++.||+|||.+|||||||||+|+|++. +|++||+|||.+..+..              ++|.|+
T Consensus       210 ------~~Ar~ylrDvv~GLEYLH~QgiiHRDIKPsNLLl~~-~g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~  282 (576)
T KOG0585|consen  210 ------QQARKYLRDVVLGLEYLHYQGIIHRDIKPSNLLLSS-DGTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFF  282 (576)
T ss_pred             ------HHHHHHHHHHHHHHHHHHhcCeeccccchhheEEcC-CCcEEeeccceeeecccCCccccHHHHhhcCCCcccc
Confidence                  456779999999999999999999999999999999 89999999999986622              238999


Q ss_pred             CcccccCC---CCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCccccc
Q 005958          291 SPDSNMDR---RQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILD  367 (667)
Q Consensus       291 APE~l~~~---~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  367 (667)
                      |||.+.++   ...+.+.||||+||+||.|+.|+.||-+            ..   ..+...++...+.     .++..+
T Consensus       283 APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~------------~~---~~~l~~KIvn~pL-----~fP~~p  342 (576)
T KOG0585|consen  283 APELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFD------------DF---ELELFDKIVNDPL-----EFPENP  342 (576)
T ss_pred             chHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCccc------------ch---HHHHHHHHhcCcc-----cCCCcc
Confidence            99977663   2347899999999999999999999942            11   2233334443322     234445


Q ss_pred             CCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          368 RNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       368 ~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      .+.++++|||.+||++||++|++..++..|||.....
T Consensus       343 e~~e~~kDli~~lL~KdP~~Ri~l~~ik~Hpwvt~~g  379 (576)
T KOG0585|consen  343 EINEDLKDLIKRLLEKDPEQRITLPDIKLHPWVTRDG  379 (576)
T ss_pred             cccHHHHHHHHHHhhcChhheeehhhheecceeccCC
Confidence            6789999999999999999999999999999998763

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=3.2e-43  Score=370.71  Aligned_cols=268  Identities=20%  Similarity=0.243  Sum_probs=203.5

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      .++|++.+.||+|+||    .||+|++..     +++.||||++....   ......+|+.+++.+.      ||||+++
T Consensus         4 ~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~------h~niv~~   68 (303)
T cd07869           4 ADSYEKLEKLGEGSYA----TVYKGKSKV-----NGKLVALKVIRLQEEEGTPFTAIREASLLKGLK------HANIVLL   68 (303)
T ss_pred             cccceEeeeEEecCCE----EEEEEEECC-----CCCEEEEEEeccccccccchhHHHHHHHHhhCC------CCCcCeE
Confidence            4789999999999999    999999987     78999999987532   2235678999999994      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     +....|+||| |+++ +|.+++..+.        ..+++                    ..++.++.||+
T Consensus        69 ~~~~~-----~~~~~~lv~e-~~~~-~l~~~~~~~~--------~~~~~--------------------~~~~~~~~qi~  113 (303)
T cd07869          69 HDIIH-----TKETLTLVFE-YVHT-DLCQYMDKHP--------GGLHP--------------------ENVKLFLFQLL  113 (303)
T ss_pred             EEEEe-----cCCeEEEEEE-CCCc-CHHHHHHhCC--------CCCCH--------------------HHHHHHHHHHH
Confidence            99998     7789999999 9976 9999887642        13443                    45788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      .||+|||++||+||||||+|||++. ++.+||+|||++.....         ..+.|+|||++.+...++.++||||+||
T Consensus       114 ~al~~lH~~~ivH~dlkp~Nill~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~  192 (303)
T cd07869         114 RGLSYIHQRYILHRDLKPQNLLISD-TGELKLADFGLARAKSVPSHTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGC  192 (303)
T ss_pred             HHHHHHHHCCeecCCCCHHHEEECC-CCCEEECCCCcceeccCCCccCCCCcccCCCCChHHHcCCCCCCcHHHHHHHHH
Confidence            9999999999999999999999998 89999999999875432         1367999997777777899999999999


Q ss_pred             HHHHHHhCCCCChhhh----hhhhhhhccCCChhHHHHHHHHHhccCCCCC-----CCCc-c--cccCCCHHHHHHHHHh
Q 005958          313 MMAKMVLRELMDPLIF----TKFKSFLTKGIDPSCLREFLLQVLNRNSSSG-----NTGF-Q--ILDRNWGAGWNLLSLL  380 (667)
Q Consensus       313 iLyemltG~~PF~~~~----~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~-----~~~~-~--~~~~~s~e~~dLI~~~  380 (667)
                      ++|||++|.+||.+..    +....+...+.+........... ....+..     .... .  .....++++++||.+|
T Consensus       193 il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~m  271 (303)
T cd07869         193 IFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWPGVHSL-PHFKPERFTLYSPKNLRQAWNKLSYVNHAEDLASKL  271 (303)
T ss_pred             HHHHHHhCCCCCCCCccHHHHHHHHHHHhCCCChhhccchhhc-cccccccccccCCccHHHHhhccCCChHHHHHHHHH
Confidence            9999999999997421    11222222222221110000000 0000000     0000 0  0112457899999999


Q ss_pred             hhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          381 LATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       381 L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      |++||++|||+.|+|+||||++..
T Consensus       272 L~~dp~~R~s~~~~l~h~~f~~~~  295 (303)
T cd07869         272 LQCFPKNRLSAQAALSHEYFSDLP  295 (303)
T ss_pred             hccCchhccCHHHHhcCcccccCC
Confidence            999999999999999999999876

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.1e-44  Score=359.07  Aligned_cols=251  Identities=21%  Similarity=0.306  Sum_probs=213.9

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----------hhHHHHHHHHHHHHHHhhccCCC
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----------QAQRRGRRAIEVLKKLVRRRLMY  154 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----------~~~~~~~rEi~iL~~L~~~~~~~  154 (667)
                      .+.|+-.+.||.|..+    +|.+|.++.     +++.+|+|+|...          ...+...+|++||+++.     +
T Consensus        16 y~~y~pkeilgrgvss----~vrRci~k~-----t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~-----G   81 (411)
T KOG0599|consen   16 YAKYEPKEILGRGVSS----VVRRCIHKE-----TGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVM-----G   81 (411)
T ss_pred             HhhcChHHHhcccchh----hhhhhhhcc-----cccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhc-----C
Confidence            4778889999999999    999999998     8999999999741          11233478999999998     8


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      ||||++++++|+     ....+++|+| +|+.|.|+|++...         ..++|+++                    +
T Consensus        82 HP~II~l~D~ye-----s~sF~FlVFd-l~prGELFDyLts~---------VtlSEK~t--------------------R  126 (411)
T KOG0599|consen   82 HPYIIDLQDVYE-----SDAFVFLVFD-LMPRGELFDYLTSK---------VTLSEKET--------------------R  126 (411)
T ss_pred             CCcEEEeeeecc-----Ccchhhhhhh-hcccchHHHHhhhh---------eeecHHHH--------------------H
Confidence            999999999999     7889999999 99999999999874         47888765                    5


Q ss_pred             HHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC--------CCCCCccccc-----CCCCC
Q 005958          235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG--------PNNSSPDSNM-----DRRQM  301 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~--------~~Y~APE~l~-----~~~~y  301 (667)
                      .||+|++.|+.|||.++||||||||+|||+++ +.++||+|||+|+.+..+.        |.|.|||.+.     +...|
T Consensus       127 ~iMrqlfegVeylHa~~IVHRDLKpENILldd-n~~i~isDFGFa~~l~~GekLrelCGTPgYLAPEtikC~m~e~~pGY  205 (411)
T KOG0599|consen  127 RIMRQLFEGVEYLHARNIVHRDLKPENILLDD-NMNIKISDFGFACQLEPGEKLRELCGTPGYLAPETIKCSMYENHPGY  205 (411)
T ss_pred             HHHHHHHHHHHHHHHhhhhhcccChhheeecc-ccceEEeccceeeccCCchhHHHhcCCCcccChhheeeecccCCCCc
Confidence            69999999999999999999999999999998 8999999999999988765        8999999654     45679


Q ss_pred             CchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhh
Q 005958          302 MIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLL  381 (667)
Q Consensus       302 s~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L  381 (667)
                      +..+|+||+|||+|.|+.|.+||....|+..               +..++.+...+   .-+.+.++|.+++|||.+||
T Consensus       206 s~EVD~Wa~GVImyTLLaGcpPFwHRkQmlM---------------LR~ImeGkyqF---~speWadis~~~KdLIsrlL  267 (411)
T KOG0599|consen  206 SKEVDEWACGVIMYTLLAGCPPFWHRKQMLM---------------LRMIMEGKYQF---RSPEWADISATVKDLISRLL  267 (411)
T ss_pred             cchhhHHHHHHHHHHHHcCCCchhHHHHHHH---------------HHHHHhccccc---CCcchhhccccHHHHHHHHH
Confidence            9999999999999999999999985554432               12223322222   23456788999999999999


Q ss_pred             hcCcCCCCCHHHHHcCCCCCCC
Q 005958          382 ATKPSKRISCLDALRHPFLCGP  403 (667)
Q Consensus       382 ~~DP~kRpSa~elL~HPwf~~~  403 (667)
                      +.||.+|+|++|+|+||||.++
T Consensus       268 qVdp~~Ritake~LaHpff~q~  289 (411)
T KOG0599|consen  268 QVDPTKRITAKEALAHPFFIQI  289 (411)
T ss_pred             eeCchhcccHHHHhcChHHHHH
Confidence            9999999999999999999543

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-44  Score=376.80  Aligned_cols=254  Identities=22%  Similarity=0.292  Sum_probs=204.4

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh--HHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA--QRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~--~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ..+|..++.||+|+||    .||++.+..     +|..+|||.+.....  .+.+.+|+.+|++|+      |||||+++
T Consensus        16 ~~~~~~~~~lG~Gs~G----~V~l~~~~~-----~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~------~p~IV~~~   80 (313)
T KOG0198|consen   16 ISNWSKGKLLGRGSFG----SVYLATNKK-----TGELMAVKSVELEDSPTSESLEREIRILSRLN------HPNIVQYY   80 (313)
T ss_pred             cchhhhhccccCccce----EEEEEEecC-----CCcceeeeeeecccchhHHHHHHHHHHHHhCC------CCCEEeeC
Confidence            4668899999999999    999999998     799999999876421  345789999999995      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      |.....   ....++|+|| |+.+|+|.+++.+.+        .+|+|                    ..|+.+.+||++
T Consensus        81 G~~~~~---~~~~~~i~mE-y~~~GsL~~~~~~~g--------~~l~E--------------------~~v~~ytr~iL~  128 (313)
T KOG0198|consen   81 GSSSSR---ENDEYNIFME-YAPGGSLSDLIKRYG--------GKLPE--------------------PLVRRYTRQILE  128 (313)
T ss_pred             Cccccc---cCeeeEeeee-ccCCCcHHHHHHHcC--------CCCCH--------------------HHHHHHHHHHHH
Confidence            975411   1137999999 999999999999865        13554                    578899999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC------------CCCCCCCcccccCCCCCCchhhHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE------------DGPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~------------~~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      ||.|||++|||||||||+|||++..++.+||+|||+++....            +.+.|||||++..+.....++|||||
T Consensus       129 GL~ylHs~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~~~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSl  208 (313)
T KOG0198|consen  129 GLAYLHSKGIVHCDIKPANILLDPSNGDVKLADFGLAKKLESKGTKSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSL  208 (313)
T ss_pred             HHHHHHhCCEeccCcccceEEEeCCCCeEEeccCccccccccccccccccccccCCccccCchhhcCCCcCCccchhhhc
Confidence            999999999999999999999998458999999999986652            12889999987753333459999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      ||++.||+||++||.+..              ...+.+..+....     ....++..+++++++||.+||..||++|||
T Consensus       209 GCtVvEM~Tg~~PW~~~~--------------~~~~~~~~ig~~~-----~~P~ip~~ls~~a~~Fl~~C~~~~p~~Rpt  269 (313)
T KOG0198|consen  209 GCTVVEMLTGKPPWSEFF--------------EEAEALLLIGRED-----SLPEIPDSLSDEAKDFLRKCFKRDPEKRPT  269 (313)
T ss_pred             CCEEEeccCCCCcchhhc--------------chHHHHHHHhccC-----CCCCCCcccCHHHHHHHHHHhhcCcccCcC
Confidence            999999999999986420              0111111111111     011455678999999999999999999999


Q ss_pred             HHHHHcCCCCCCCC
Q 005958          391 CLDALRHPFLCGPR  404 (667)
Q Consensus       391 a~elL~HPwf~~~~  404 (667)
                      |+++|+|||.+...
T Consensus       270 a~eLL~hpf~~~~~  283 (313)
T KOG0198|consen  270 AEELLEHPFLKQNS  283 (313)
T ss_pred             HHHHhhChhhhccc
Confidence            99999999998865

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=2.2e-43  Score=377.30  Aligned_cols=253  Identities=19%  Similarity=0.267  Sum_probs=208.9

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMY  154 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~  154 (667)
                      ...+.+++|++.+.||+|+||    .||+|+++.     +++.||||++....     ..+.+.+|+.+++.++      
T Consensus        12 ~~~~~~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~------   76 (329)
T PTZ00263         12 TSSWKLSDFEMGETLGTGSFG----RVRIAKHKG-----TGEYYAIKCLKKREILKMKQVQHVAQEKSILMELS------   76 (329)
T ss_pred             cCCCCchheEEEEEEEecCCe----EEEEEEECC-----CCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCC------
Confidence            345778999999999999999    999999998     79999999997532     2245688999999994      


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      ||||+++++++.     +.+.+|+||| |+.+|+|.+++...+         .+++                    ..++
T Consensus        77 hp~iv~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~  121 (329)
T PTZ00263         77 HPFIVNMMCSFQ-----DENRVYFLLE-FVVGGELFTHLRKAG---------RFPN--------------------DVAK  121 (329)
T ss_pred             CCCCCcEEEEEE-----cCCEEEEEEc-CCCCChHHHHHHHcC---------CCCH--------------------HHHH
Confidence            999999999999     7889999999 999999999998754         4454                    3467


Q ss_pred             HHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC------CCCCCCcccccCCCCCCchhhHH
Q 005958          235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED------GPNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------~~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      .++.||+.||+|||++||+||||||+|||++. ++.+||+|||++......      .+.|+|||++. ...++.++|||
T Consensus       122 ~~~~qi~~aL~~LH~~~ivH~dlkp~NIll~~-~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~Diw  199 (329)
T PTZ00263        122 FYHAELVLAFEYLHSKDIIYRDLKPENLLLDN-KGHVKVTDFGFAKKVPDRTFTLCGTPEYLAPEVIQ-SKGHGKAVDWW  199 (329)
T ss_pred             HHHHHHHHHHHHHHHCCeeecCCCHHHEEECC-CCCEEEeeccCceEcCCCcceecCChhhcCHHHHc-CCCCCCcceee
Confidence            79999999999999999999999999999998 899999999999866433      36799999654 45589999999


Q ss_pred             HHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCC
Q 005958          309 CVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  388 (667)
Q Consensus       309 SLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kR  388 (667)
                      ||||++|||++|.+||.+            ..+....+   .+....       ......+++++++||.+||+.||++|
T Consensus       200 slG~il~elltg~~pf~~------------~~~~~~~~---~i~~~~-------~~~p~~~~~~~~~li~~~L~~dP~~R  257 (329)
T PTZ00263        200 TMGVLLYEFIAGYPPFFD------------DTPFRIYE---KILAGR-------LKFPNWFDGRARDLVKGLLQTDHTKR  257 (329)
T ss_pred             chHHHHHHHHcCCCCCCC------------CCHHHHHH---HHhcCC-------cCCCCCCCHHHHHHHHHHhhcCHHHc
Confidence            999999999999999842            22222222   222111       12234478899999999999999999


Q ss_pred             CC-----HHHHHcCCCCCCCCCC
Q 005958          389 IS-----CLDALRHPFLCGPRWR  406 (667)
Q Consensus       389 pS-----a~elL~HPwf~~~~~~  406 (667)
                      ++     ++++++||||.+..|.
T Consensus       258 ~~~~~~~~~~ll~hp~f~~~~~~  280 (329)
T PTZ00263        258 LGTLKGGVADVKNHPYFHGANWD  280 (329)
T ss_pred             CCCCCCCHHHHhcCCccCCCCHH
Confidence            97     7999999999987643

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.1e-43  Score=369.22  Aligned_cols=247  Identities=17%  Similarity=0.237  Sum_probs=204.5

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ++|++.+.||+|+||    .||+|.+..     +++.||+|++....     ..+.+.+|+++++.+.      ||||++
T Consensus         1 ~~y~~~~~lg~G~~g----~Vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~------hp~iv~   65 (291)
T cd05612           1 DDLERIKTVGTGTFG----RVHLVRDRI-----SEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVS------HPFIIR   65 (291)
T ss_pred             CCceeeeeeecCCCe----EEEEEEEcC-----CCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCC------CCcHhh
Confidence            479999999999999    999999997     79999999997532     2345688999999994      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     +.+.+|+||| |+++|+|.+++...+         .+++                    ..++.++.||
T Consensus        66 ~~~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~~---------~~~~--------------------~~~~~~~~qi  110 (291)
T cd05612          66 LFWTEH-----DQRFLYMLME-YVPGGELFSYLRNSG---------RFSN--------------------STGLFYASEI  110 (291)
T ss_pred             hHhhhc-----cCCeEEEEEe-CCCCCCHHHHHHHcC---------CCCH--------------------HHHHHHHHHH
Confidence            999988     7789999999 999999999998754         4554                    3467799999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC------CCCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~------~~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      +.||+|||++||+||||||+|||++. ++.+||+|||++.....      +.+.|+|||++ ....++.++|||||||++
T Consensus       111 ~~~l~~lH~~~i~H~dlkp~NIli~~-~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DiwSlG~il  188 (291)
T cd05612         111 VCALEYLHSKEIVYRDLKPENILLDK-EGHIKLTDFGFAKKLRDRTWTLCGTPEYLAPEVI-QSKGHNKAVDWWALGILI  188 (291)
T ss_pred             HHHHHHHHHCCeeecCCCHHHeEECC-CCCEEEEecCcchhccCCcccccCChhhcCHHHH-cCCCCCchhhHHHHHHHH
Confidence            99999999999999999999999998 89999999999986543      23789999965 455689999999999999


Q ss_pred             HHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC----
Q 005958          315 AKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS----  390 (667)
Q Consensus       315 yemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS----  390 (667)
                      |+|++|+.||..            .......+.   +....       .......++.+++||.+||+.||.+|++    
T Consensus       189 ~~l~~g~~pf~~------------~~~~~~~~~---i~~~~-------~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~  246 (291)
T cd05612         189 YEMLVGYPPFFD------------DNPFGIYEK---ILAGK-------LEFPRHLDLYAKDLIKKLLVVDRTRRLGNMKN  246 (291)
T ss_pred             HHHHhCCCCCCC------------CCHHHHHHH---HHhCC-------cCCCccCCHHHHHHHHHHcCCCHHHccCCccC
Confidence            999999999852            222222222   21111       1233456889999999999999999995    


Q ss_pred             -HHHHHcCCCCCCCCCC
Q 005958          391 -CLDALRHPFLCGPRWR  406 (667)
Q Consensus       391 -a~elL~HPwf~~~~~~  406 (667)
                       ++++++||||....|.
T Consensus       247 ~~~~~l~h~~~~~~~~~  263 (291)
T cd05612         247 GADDVKNHRWFKSVDWD  263 (291)
T ss_pred             CHHHHhcCccccCCCHH
Confidence             9999999999987753

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=2.9e-43  Score=367.23  Aligned_cols=260  Identities=20%  Similarity=0.283  Sum_probs=215.1

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCC
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLM  153 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~  153 (667)
                      ....+.+++|++++.||.|.-|    +||+|+.+.     ++..+|+|++.+..     ...++..|-+||+.+      
T Consensus        70 ~~~~l~l~~f~llk~LG~GdiG----~VyL~~l~~-----t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~l------  134 (459)
T KOG0610|consen   70 KDGSLGLRHFRLLKRLGCGDIG----TVYLVELRG-----TNCLFAMKVMDKESLASRKKLKRAQTEREILSLL------  134 (459)
T ss_pred             CCCccCHHHHHHHHHcCCCCce----eEEEEEecC-----CCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhc------
Confidence            3455677899999999999999    999999998     78999999998743     234568899999999      


Q ss_pred             CCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHH
Q 005958          154 YHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLI  233 (667)
Q Consensus       154 ~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i  233 (667)
                      +||.+..+|..|+     ...+.|+||| ||+||||+.+.+++.       ...|+|                    ..+
T Consensus       135 DHPFlPTLYa~fe-----t~~~~cl~me-yCpGGdL~~LrqkQp-------~~~fse--------------------~~a  181 (459)
T KOG0610|consen  135 DHPFLPTLYASFE-----TDKYSCLVME-YCPGGDLHSLRQKQP-------GKRFSE--------------------SAA  181 (459)
T ss_pred             CCCccchhhheee-----ccceeEEEEe-cCCCccHHHHHhhCC-------CCccch--------------------hhH
Confidence            6999999999999     8899999999 999999999998753       235665                    568


Q ss_pred             HHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-----------------------------
Q 005958          234 RLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-----------------------------  284 (667)
Q Consensus       234 ~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-----------------------------  284 (667)
                      ++|+.+++.||+|||-.|||.||||||||||.+ +|+|.|+||.++.....                             
T Consensus       182 RFYaAEvl~ALEYLHmlGivYRDLKPENILvre-dGHIMLsDFDLS~~~~~~Pt~~~s~~~~~~~~~~~~~~~~~s~f~~  260 (459)
T KOG0610|consen  182 RFYAAEVLLALEYLHMLGIVYRDLKPENILVRE-DGHIMLSDFDLSLRCPVSPTLVKSSSPRSSGSQPSCRSRQPSCFSP  260 (459)
T ss_pred             HHHHHHHHHHHHHHHhhceeeccCCcceeEEec-CCcEEeeeccccccCCCCCeeeccCCCCCCCCCccccccccccccc
Confidence            999999999999999999999999999999999 99999999987642110                             


Q ss_pred             ------C------------------C------------CCCCCcccccCCCCCCchhhHHHHHHHHHHHHhCCCCChhhh
Q 005958          285 ------D------------------G------------PNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIF  328 (667)
Q Consensus       285 ------~------------------~------------~~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG~~PF~~~~  328 (667)
                            .                  .            -.|.|||++.+. ..+.++|+|+|||++|||++|..||.   
T Consensus       261 r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~-GHgsAVDWWtfGIflYEmLyG~TPFK---  336 (459)
T KOG0610|consen  261 RCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGE-GHGSAVDWWTFGIFLYEMLYGTTPFK---  336 (459)
T ss_pred             chhccccccccccccccccchhhhcCCCCccccccccccccccceeeecC-CCCchhhHHHHHHHHHHHHhCCCCcC---
Confidence                  0                  0            248899966554 58999999999999999999999994   


Q ss_pred             hhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC----HHHHHcCCCCCCCC
Q 005958          329 TKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS----CLDALRHPFLCGPR  404 (667)
Q Consensus       329 ~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS----a~elL~HPwf~~~~  404 (667)
                               |....   +.+.+++.....     ++..+.++.+++|||+++|.+||++|+.    |+||.+||||++++
T Consensus       337 ---------G~~~~---~Tl~NIv~~~l~-----Fp~~~~vs~~akDLIr~LLvKdP~kRlg~~rGA~eIK~HpFF~gVn  399 (459)
T KOG0610|consen  337 ---------GSNNK---ETLRNIVGQPLK-----FPEEPEVSSAAKDLIRKLLVKDPSKRLGSKRGAAEIKRHPFFEGVN  399 (459)
T ss_pred             ---------CCCch---hhHHHHhcCCCc-----CCCCCcchhHHHHHHHHHhccChhhhhccccchHHhhcCccccCCC
Confidence                     43332   222333333322     3444577889999999999999999998    99999999999999


Q ss_pred             CCCC
Q 005958          405 WRVD  408 (667)
Q Consensus       405 ~~~~  408 (667)
                      |...
T Consensus       400 WaLi  403 (459)
T KOG0610|consen  400 WALI  403 (459)
T ss_pred             hhhe
Confidence            9744

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-42  Score=375.77  Aligned_cols=251  Identities=20%  Similarity=0.243  Sum_probs=211.6

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-----HHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-----QRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-----~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      ...|++.+.||+|.||    +||+|+++.     +|+.+|+|++.+...     ...+.+|+.||++++     .|||||
T Consensus        34 ~~~Y~l~~~lG~G~Fg----~v~~~~~~~-----tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~-----~hpniv   99 (382)
T KOG0032|consen   34 KEKYELGRELGRGQFG----VVYLCREKS-----TGKEVACKVIPKRKLRGKEDREDVRREVAILQQLS-----GHPNIV   99 (382)
T ss_pred             cccEEehhhhCCCCce----EEEEEEecC-----CCceeEEEEeehhhccccccHHHHHHHHHHHHhcc-----CCCCEE
Confidence            4679999999999999    999999998     899999999986432     357899999999997     699999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      +++++|+     +...+++||| +|.||+|++.|...          .++|..                    +..+++|
T Consensus       100 ~l~~~~e-----~~~~~~lvmE-L~~GGeLfd~i~~~----------~~sE~d--------------------a~~~~~~  143 (382)
T KOG0032|consen  100 QLKDAFE-----DPDSVYLVME-LCEGGELFDRIVKK----------HYSERD--------------------AAGIIRQ  143 (382)
T ss_pred             EEEEEEE-----cCCeEEEEEE-ecCCchHHHHHHHc----------cCCHHH--------------------HHHHHHH
Confidence            9999999     7789999999 99999999999874          266644                    5779999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCC---CeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVD---RHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~---~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      ++.|+.|||+.||+||||||+|+|+...+   +.+|++|||+|.....+        .+.|+|||+ .....|+..+|||
T Consensus       144 il~av~~lH~~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~~~~~~~~~Gtp~y~APEv-l~~~~y~~~~DiW  222 (382)
T KOG0032|consen  144 ILEAVKYLHSLGVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKPGERLHTIVGTPEYVAPEV-LGGRPYGDEVDVW  222 (382)
T ss_pred             HHHHHHHHHhCCceeccCCHHHeeeccccCCCCcEEEeeCCCceEccCCceEeeecCCccccCchh-hcCCCCCcccchh
Confidence            99999999999999999999999998632   47999999999988763        289999994 4556799999999


Q ss_pred             HHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCC
Q 005958          309 CVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  388 (667)
Q Consensus       309 SLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kR  388 (667)
                      |+||++|.|++|.+||...            .....   ...+.....   ....+.++.++..+++||.+||..||.+|
T Consensus       223 S~Gvi~yiLL~G~~PF~~~------------~~~~~---~~~i~~~~~---~f~~~~w~~is~~akd~i~~ll~~dp~~R  284 (382)
T KOG0032|consen  223 SIGVILYILLSGVPPFWGE------------TEFEI---FLAILRGDF---DFTSEPWDDISESAKDFIRKLLEFDPRKR  284 (382)
T ss_pred             HHHHHHHHHhhCCCCCcCC------------ChhHH---HHHHHcCCC---CCCCCCccccCHHHHHHHHHhcccCcccC
Confidence            9999999999999999622            11111   112222222   12335677889999999999999999999


Q ss_pred             CCHHHHHcCCCCCCCC
Q 005958          389 ISCLDALRHPFLCGPR  404 (667)
Q Consensus       389 pSa~elL~HPwf~~~~  404 (667)
                      +||.++|+|||+++..
T Consensus       285 ~ta~~~L~HpWi~~~~  300 (382)
T KOG0032|consen  285 LTAAQALQHPWIKSIG  300 (382)
T ss_pred             CCHHHHhcCccccCCc
Confidence            9999999999999864

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=2.4e-42  Score=368.52  Aligned_cols=272  Identities=19%  Similarity=0.206  Sum_probs=206.8

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      +|++.+.||+|+||    .||+|++..     +++.||||++...    .....+.+|+.++++++      ||||++++
T Consensus         1 ry~i~~~lg~G~~g----~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~------hpniv~~~   65 (338)
T cd07859           1 RYKIQEVIGKGSYG----VVCSAIDTH-----TGEKVAIKKINDVFEHVSDATRILREIKLLRLLR------HPDIVEIK   65 (338)
T ss_pred             CeEEEEEEeecCCe----EEEEEEECC-----CCCEEEEEEechhhccchhHHHHHHHHHHHHhCC------CCCEeeec
Confidence            59999999999999    999999987     7999999998742    22345688999999995      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++..........+|+||| |+++ +|.+++....         .+++                    ..++.++.||+.
T Consensus        66 ~~~~~~~~~~~~~~~lv~e-~~~~-~L~~~l~~~~---------~~~~--------------------~~~~~i~~qi~~  114 (338)
T cd07859          66 HIMLPPSRREFKDIYVVFE-LMES-DLHQVIKAND---------DLTP--------------------EHHQFFLYQLLR  114 (338)
T ss_pred             ceEeccCCCCCceEEEEEe-cCCC-CHHHHHHhcc---------cCCH--------------------HHHHHHHHHHHH
Confidence            9987443234457899999 9975 9999998654         4454                    457789999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC------------CCCCCCCcccccC-CCCCCchhhHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE------------DGPNNSSPDSNMD-RRQMMIAFDMRC  309 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~------------~~~~Y~APE~l~~-~~~ys~ksDIWS  309 (667)
                      ||.|||++||+||||||+|||++. ++.+||+|||+++....            +.+.|+|||++.+ ...++.++||||
T Consensus       115 aL~~LH~~~ivH~dlkp~NIll~~-~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwS  193 (338)
T cd07859         115 ALKYIHTANVFHRDLKPKNILANA-DCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWS  193 (338)
T ss_pred             HHHHHHHCCeecCCCCHHHeEECC-CCcEEEccCccccccccccCccccccCCCCCCCcCCHHHHhccccccCchhHHHH
Confidence            999999999999999999999998 89999999999975421            2367999996543 256899999999


Q ss_pred             HHHHHHHHHhCCCCChhhh---hhhhhhhccCCChhHHHHHHHH-----HhccCCCCC-CCCcccccCCCHHHHHHHHHh
Q 005958          310 VGFMMAKMVLRELMDPLIF---TKFKSFLTKGIDPSCLREFLLQ-----VLNRNSSSG-NTGFQILDRNWGAGWNLLSLL  380 (667)
Q Consensus       310 LGviLyemltG~~PF~~~~---~~~~~~~~~g~~~~~l~~~~~~-----~~~~~~~~~-~~~~~~~~~~s~e~~dLI~~~  380 (667)
                      |||++|||++|++||....   +...+....|.++......+..     .+....... .......+..++++.+||.+|
T Consensus       194 lGvvl~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  273 (338)
T cd07859         194 IGCIFAEVLTGKPLFPGKNVVHQLDLITDLLGTPSPETISRVRNEKARRYLSSMRKKQPVPFSQKFPNADPLALRLLERL  273 (338)
T ss_pred             HHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhhcccCCCchHHhcCCCChHHHHHHHHH
Confidence            9999999999999997422   2222223344444332222110     000000000 001122345778999999999


Q ss_pred             hhcCcCCCCCHHHHHcCCCCCCCCC
Q 005958          381 LATKPSKRISCLDALRHPFLCGPRW  405 (667)
Q Consensus       381 L~~DP~kRpSa~elL~HPwf~~~~~  405 (667)
                      |+.||++|||++|+|+||||++...
T Consensus       274 l~~~P~~Rpt~~e~l~hp~f~~~~~  298 (338)
T cd07859         274 LAFDPKDRPTAEEALADPYFKGLAK  298 (338)
T ss_pred             cCcCcccCCCHHHHhcCchhhhcCc
Confidence            9999999999999999999988764

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=2.1e-42  Score=366.24  Aligned_cols=272  Identities=20%  Similarity=0.260  Sum_probs=199.9

Q ss_pred             EeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEeccc
Q 005958           91 LDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTT  170 (667)
Q Consensus        91 ~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~~  170 (667)
                      +++||+|+||    +||+|+++..   .+++.||+|.+..........+|+.+|++++      ||||+++++++...  
T Consensus         6 ~~~lG~G~~g----~Vy~~~~~~~---~~~~~~aiK~~~~~~~~~~~~~E~~~l~~l~------h~niv~~~~~~~~~--   70 (317)
T cd07868           6 GCKVGRGTYG----HVYKAKRKDG---KDDRDYALKQIEGTGISMSACREIALLRELK------HPNVISLQKVFLSH--   70 (317)
T ss_pred             ccccccCCCe----EEEEEEEccC---CCCceEEEEEECCCCCcHHHHHHHHHHHhcC------CCCCcceeeeEecC--
Confidence            4689999999    9999997642   1578999999976555566789999999995      99999999999743  


Q ss_pred             CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHC
Q 005958          171 SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSH  250 (667)
Q Consensus       171 ~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs~  250 (667)
                       ....+|+||| |+++ +|.+++.........                    .....++...++.++.||+.||+|||++
T Consensus        71 -~~~~~~lv~e-~~~~-~l~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~i~~qi~~al~~LH~~  127 (317)
T cd07868          71 -ADRKVWLLFD-YAEH-DLWHIIKFHRASKAN--------------------KKPVQLPRGMVKSLLYQILDGIHYLHAN  127 (317)
T ss_pred             -CCcEEEEEEe-ccCC-CHHHHHHhccccccc--------------------CCcccCCHHHHHHHHHHHHHHHHHHHhC
Confidence             5678999999 9987 999998754311110                    0112344567899999999999999999


Q ss_pred             CCcccCCCCCcEEEcC---CCCeEEEeeecccccccCC------------CCCCCCcccccCCCCCCchhhHHHHHHHHH
Q 005958          251 GLAHTELRLENVHISP---VDRHIKVGILGNAADFYED------------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMA  315 (667)
Q Consensus       251 gIvHrDLKPeNILl~~---~~~~vKL~DFGlA~~~~~~------------~~~Y~APE~l~~~~~ys~ksDIWSLGviLy  315 (667)
                      ||+||||||+|||+..   .++.+||+|||+|+.+...            .+.|+|||++.+...|+.++||||+||++|
T Consensus       128 ~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~  207 (317)
T cd07868         128 WVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFA  207 (317)
T ss_pred             CEEcCCCCHHHEEEecCCCCcCcEEEeecCceeccCCCCccccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHH
Confidence            9999999999999942   2578999999999765422            256999998777777999999999999999


Q ss_pred             HHHhCCCCChhh------------hhhhhhhhccCCChhHHHHHHHHH---------hccCCCCCCCC---c-ccccCCC
Q 005958          316 KMVLRELMDPLI------------FTKFKSFLTKGIDPSCLREFLLQV---------LNRNSSSGNTG---F-QILDRNW  370 (667)
Q Consensus       316 emltG~~PF~~~------------~~~~~~~~~~g~~~~~l~~~~~~~---------~~~~~~~~~~~---~-~~~~~~s  370 (667)
                      ||++|++||...            .+...++...|.+.....+.+...         +..........   . ......+
T Consensus       208 el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (317)
T cd07868         208 ELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPD  287 (317)
T ss_pred             HHHhCCCCccCCcccccccccccHHHHHHHHHhcCCCChHHhHHHhhccchhhhhhhhhccccCcccccchHHhcCCCCC
Confidence            999999999631            222333344444433222211110         00000000000   0 0112345


Q ss_pred             HHHHHHHHHhhhcCcCCCCCHHHHHcCCCC
Q 005958          371 GAGWNLLSLLLATKPSKRISCLDALRHPFL  400 (667)
Q Consensus       371 ~e~~dLI~~~L~~DP~kRpSa~elL~HPwf  400 (667)
                      .++.+||.+||++||++|||++|+|+||||
T Consensus       288 ~~~~dli~~mL~~dP~~R~t~~e~l~hp~f  317 (317)
T cd07868         288 SKAFHLLQKLLTMDPIKRITSEQAMQDPYF  317 (317)
T ss_pred             hHHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence            689999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=2e-42  Score=384.89  Aligned_cols=278  Identities=19%  Similarity=0.259  Sum_probs=209.5

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      ...+|++++.||+|+||    .||+|.+..     +++.||||++....  ....+|+.+|+.++      ||||+++++
T Consensus        64 ~~~~y~~~~~LG~G~fg----~Vy~~~~~~-----~~~~vAiK~i~~~~--~~~~~Ei~il~~l~------h~niv~l~~  126 (440)
T PTZ00036         64 PNKSYKLGNIIGNGSFG----VVYEAICID-----TSEKVAIKKVLQDP--QYKNRELLIMKNLN------HINIIFLKD  126 (440)
T ss_pred             cCCeEEEeEEEEeCCCE----EEEEEEECC-----CCCEEEEEEEecCc--chHHHHHHHHHhcC------CCCCcceee
Confidence            34689999999999999    999999987     78999999986432  23467999999995      999999999


Q ss_pred             EEEeccc---CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          164 YVSSHTT---SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       164 ~~~~~~~---~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      ++.....   .....+++||| |+++ +|.+++.....     ....++                    ...++.++.||
T Consensus       127 ~~~~~~~~~~~~~~~l~lvmE-~~~~-~l~~~~~~~~~-----~~~~l~--------------------~~~~~~~~~qi  179 (440)
T PTZ00036        127 YYYTECFKKNEKNIFLNVVME-FIPQ-TVHKYMKHYAR-----NNHALP--------------------LFLVKLYSYQL  179 (440)
T ss_pred             eEeecccccCCCceEEEEEEe-cCCc-cHHHHHHHHhh-----cCCCCC--------------------HHHHHHHHHHH
Confidence            8863321   12346789999 9997 89888764210     001333                    35678899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      +.||+|||++||+||||||+|||++..++.+||+|||+|+.+...        .+.|+|||++.+...|+.++|||||||
T Consensus       180 ~~gL~yLH~~~IiHrDLKp~NILl~~~~~~vkL~DFGla~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGv  259 (440)
T PTZ00036        180 CRALAYIHSKFICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLLAGQRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGC  259 (440)
T ss_pred             HHHHHHHHHCCEecCCcCHHHEEEcCCCCceeeeccccchhccCCCCcccCCCCcCccCHHHhcCCCCCCcHHHHHHHHH
Confidence            999999999999999999999999974568999999999865432        367999998777778999999999999


Q ss_pred             HHHHHHhCCCCChhh---hhhhhhhhccCCChhHHHHHHHHHhccC--CCCCCCC--cccccCCCHHHHHHHHHhhhcCc
Q 005958          313 MMAKMVLRELMDPLI---FTKFKSFLTKGIDPSCLREFLLQVLNRN--SSSGNTG--FQILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       313 iLyemltG~~PF~~~---~~~~~~~~~~g~~~~~l~~~~~~~~~~~--~~~~~~~--~~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      ++|||++|.+||.+.   .+..++....|.+.......+...+...  +......  .......++++++||.+||++||
T Consensus       260 il~elltG~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP  339 (440)
T PTZ00036        260 IIAEMILGYPIFSGQSSVDQLVRIIQVLGTPTEDQLKEMNPNYADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEP  339 (440)
T ss_pred             HHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhchhhhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCCCh
Confidence            999999999999742   3444444455555443222221111000  0000000  11233567899999999999999


Q ss_pred             CCCCCHHHHHcCCCCCCCCC
Q 005958          386 SKRISCLDALRHPFLCGPRW  405 (667)
Q Consensus       386 ~kRpSa~elL~HPwf~~~~~  405 (667)
                      .+|||+.|+|+||||.+...
T Consensus       340 ~~R~ta~e~l~hp~f~~~~~  359 (440)
T PTZ00036        340 LKRLNPIEALADPFFDDLRD  359 (440)
T ss_pred             hHCcCHHHHhCChhHHhhhc
Confidence            99999999999999988764

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=9.6e-45  Score=361.44  Aligned_cols=248  Identities=16%  Similarity=0.214  Sum_probs=200.7

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcc----hhhHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS----VQAQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~----~~~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      ..+.+|+++++||+|.||    .||++++..     +|..||.|.+.-    .+.......|+.+|++|+      ||||
T Consensus        16 ~~l~~y~Il~~IG~GsFg----~vykv~~~~-----~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~------HpNI   80 (375)
T KOG0591|consen   16 KTLADYQILKKIGRGSFG----EVYKVQCLL-----DGKLVALKKIQFGMMDAKARQDCVKEISLLKQLN------HPNI   80 (375)
T ss_pred             ccHHHHHHHHHHcCCcch----heEEeeecc-----CcchhhhhhcchhhccHHHHHHHHHHHHHHHhcC------CchH
Confidence            456889999999999999    999999998     899999999974    233456789999999994      9999


Q ss_pred             eEEEE-EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          159 MQVHG-YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       159 v~l~~-~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |++++ .|. .   +...++|||| ||+.|||.++|+..+.     ....++|                    ..|+.++
T Consensus        81 VqYy~~~f~-~---~~evlnivmE-~c~~GDLsqmIk~~K~-----qkr~ipE--------------------~~Vwk~f  130 (375)
T KOG0591|consen   81 VQYYAHSFI-E---DNEVLNIVME-LCDAGDLSQMIKHFKK-----QKRLIPE--------------------KTVWKYF  130 (375)
T ss_pred             HHHHHHhhh-c---cchhhHHHHH-hhcccCHHHHHHHHHh-----ccccCch--------------------HHHHHHH
Confidence            99998 443 1   4455999999 9999999999986431     1124444                    5689999


Q ss_pred             HHHHHHHHHHHH--CC--CcccCCCCCcEEEcCCCCeEEEeeecccccccCCC---------CCCCCcccccCCCCCCch
Q 005958          238 RDLLIGVNYLHS--HG--LAHTELRLENVHISPVDRHIKVGILGNAADFYEDG---------PNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       238 ~QIl~aL~yLHs--~g--IvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~---------~~Y~APE~l~~~~~ys~k  304 (667)
                      .|++.||.++|+  ..  |+||||||.||+++. +|.+||+|||+++.+....         |+||+||.+ ...+|+++
T Consensus       131 ~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~-~gvvKLGDfGL~r~l~s~~tfA~S~VGTPyYMSPE~i-~~~~Y~~k  208 (375)
T KOG0591|consen  131 VQLCRALYHCHSKIPRGTVMHRDIKPANIFLTA-NGVVKLGDFGLGRFLSSKTTFAHSLVGTPYYMSPERI-HESGYNFK  208 (375)
T ss_pred             HHHHHHHHHHhccccccceeeccCcchheEEcC-CCceeeccchhHhHhcchhHHHHhhcCCCcccCHHHH-hcCCCCcc
Confidence            999999999999  44  999999999999999 9999999999999887653         999999955 45569999


Q ss_pred             hhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccc-cCCCHHHHHHHHHhhhc
Q 005958          305 FDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQIL-DRNWGAGWNLLSLLLAT  383 (667)
Q Consensus       305 sDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~s~e~~dLI~~~L~~  383 (667)
                      +||||+||++|||+.-++||.            |.+-..+.+.   +.....+      +.+ ..+|.++..||..|+..
T Consensus       209 SDiWslGCllyEMcaL~~PF~------------g~n~~~L~~K---I~qgd~~------~~p~~~YS~~l~~li~~ci~v  267 (375)
T KOG0591|consen  209 SDIWSLGCLLYEMCALQSPFY------------GDNLLSLCKK---IEQGDYP------PLPDEHYSTDLRELINMCIAV  267 (375)
T ss_pred             hhHHHHHHHHHHHHhcCCCcc------------cccHHHHHHH---HHcCCCC------CCcHHHhhhHHHHHHHHHccC
Confidence            999999999999999999994            4433333333   3322111      123 46788999999999999


Q ss_pred             CcCCCCCHHHHHcCCCCCCC
Q 005958          384 KPSKRISCLDALRHPFLCGP  403 (667)
Q Consensus       384 DP~kRpSa~elL~HPwf~~~  403 (667)
                      ||+.||+.     ||++.++
T Consensus       268 d~~~RP~t-----~~~v~di  282 (375)
T KOG0591|consen  268 DPEQRPDT-----VPYVQDI  282 (375)
T ss_pred             CcccCCCc-----chHHHHH
Confidence            99999986     5555443

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=3.5e-42  Score=373.00  Aligned_cols=250  Identities=16%  Similarity=0.195  Sum_probs=200.4

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ++|++.+.||+|+||    +||+|.+..     +++.||||++.+..     ....+.+|+.++.++      +||||++
T Consensus         1 ~~y~~~~~LG~G~~g----~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~------~~~~iv~   65 (363)
T cd05628           1 EDFESLKVIGRGAFG----EVRLVQKKD-----TGHVYAMKILRKADMLEKEQVGHIRAERDILVEA------DSLWVVK   65 (363)
T ss_pred             CCceEeEEEEeCCCE----EEEEEEECC-----CCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhC------CCCCcce
Confidence            579999999999999    999999987     79999999997532     223567899999999      4999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++.+.     +...+|+||| |+++|+|.+++.+.+         .+++                    ..++.++.||
T Consensus        66 ~~~~~~-----~~~~~~lv~E-~~~gg~L~~~l~~~~---------~l~~--------------------~~~~~~~~qi  110 (363)
T cd05628          66 MFYSFQ-----DKLNLYLIME-FLPGGDMMTLLMKKD---------TLTE--------------------EETQFYIAET  110 (363)
T ss_pred             EEEEEe-----cCCeEEEEEc-CCCCCcHHHHHHhcC---------CCCH--------------------HHHHHHHHHH
Confidence            999998     7889999999 999999999998754         4555                    4567899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeeccccccc-------------------------------------
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFY-------------------------------------  283 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~-------------------------------------  283 (667)
                      +.||+|||++||+||||||+|||++. ++.+||+|||+|+.+.                                     
T Consensus       111 ~~aL~~lH~~givHrDlKp~NILi~~-~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (363)
T cd05628         111 VLAIDSIHQLGFIHRDIKPDNLLLDS-KGHVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNR  189 (363)
T ss_pred             HHHHHHHHhCCeEecCCCHHHeEECC-CCCEEEeeccCcccccccccccccccccccccccccccccccccccchhhhcc
Confidence            99999999999999999999999998 8999999999986432                                     


Q ss_pred             -------CCCCCCCCcccccCCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCC
Q 005958          284 -------EDGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNS  356 (667)
Q Consensus       284 -------~~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~  356 (667)
                             .+.+.|+|||++. ...|+.++|||||||++|||++|++||..            ..+......   +.....
T Consensus       190 ~~~~~~~~Gt~~Y~aPE~~~-~~~~~~~~DvwSlGvil~ell~G~~Pf~~------------~~~~~~~~~---i~~~~~  253 (363)
T cd05628         190 RQLAFSTVGTPDYIAPEVFM-QTGYNKLCDWWSLGVIMYEMLIGYPPFCS------------ETPQETYKK---VMNWKE  253 (363)
T ss_pred             ccccccccCCccccCHHHHc-CCCCCCchhhhhhHHHHHHHHhCCCCCCC------------CCHHHHHHH---HHcCcC
Confidence                   1346799999655 45689999999999999999999999952            222222121   111100


Q ss_pred             CCCCCCcccccCCCHHHHHHHHHhhhcCcCC---CCCHHHHHcCCCCCCCCCC
Q 005958          357 SSGNTGFQILDRNWGAGWNLLSLLLATKPSK---RISCLDALRHPFLCGPRWR  406 (667)
Q Consensus       357 ~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k---RpSa~elL~HPwf~~~~~~  406 (667)
                         ...++....+++++++||.+|+. +|.+   ||+++|+++||||++.+|.
T Consensus       254 ---~~~~p~~~~~s~~~~~li~~l~~-~~~~r~~r~~~~ei~~hp~f~~~~~~  302 (363)
T cd05628         254 ---TLIFPPEVPISEKAKDLILRFCC-EWEHRIGAPGVEEIKTNPFFEGVDWE  302 (363)
T ss_pred             ---cccCCCcCCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhCCCCCCCCCHH
Confidence               00122223478999999999876 5554   5899999999999998764

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=2.2e-42  Score=371.88  Aligned_cols=255  Identities=16%  Similarity=0.201  Sum_probs=208.0

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCC
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLM  153 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~  153 (667)
                      .......++|++.+.||+|+||    .||+|.+...    .+..||+|++....     ..+.+.+|+.+++.+.     
T Consensus        23 ~~~~~~~~~y~~~~~ig~G~~g----~Vy~a~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~-----   89 (340)
T PTZ00426         23 RKNKMKYEDFNFIRTLGTGSFG----RVILATYKNE----DFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYIN-----   89 (340)
T ss_pred             cCCCCChhhcEEEEEEeecCCe----EEEEEEEECC----CCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCC-----
Confidence            3455678999999999999999    9999997752    34789999987532     2345678999999994     


Q ss_pred             CCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHH
Q 005958          154 YHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLI  233 (667)
Q Consensus       154 ~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i  233 (667)
                       ||||+++++++.     +.+.+|+||| |+.+|+|.+++...+         .+++                    ..+
T Consensus        90 -hp~Iv~~~~~~~-----~~~~~~lv~E-y~~~g~L~~~i~~~~---------~~~~--------------------~~~  133 (340)
T PTZ00426         90 -HPFCVNLYGSFK-----DESYLYLVLE-FVIGGEFFTFLRRNK---------RFPN--------------------DVG  133 (340)
T ss_pred             -CCCCcceEEEEE-----eCCEEEEEEe-CCCCCcHHHHHHHcC---------CCCH--------------------HHH
Confidence             999999999998     7789999999 999999999998754         4554                    456


Q ss_pred             HHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC------CCCCCCCcccccCCCCCCchhhH
Q 005958          234 RLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE------DGPNNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       234 ~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~------~~~~Y~APE~l~~~~~ys~ksDI  307 (667)
                      +.++.||+.||.|||++||+||||||+|||++. ++.+||+|||++.....      +.+.|+|||++. ...++.++||
T Consensus       134 ~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~-~~~ikL~DFG~a~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~Di  211 (340)
T PTZ00426        134 CFYAAQIVLIFEYLQSLNIVYRDLKPENLLLDK-DGFIKMTDFGFAKVVDTRTYTLCGTPEYIAPEILL-NVGHGKAADW  211 (340)
T ss_pred             HHHHHHHHHHHHHHHHCCeEccCCCHHHEEECC-CCCEEEecCCCCeecCCCcceecCChhhcCHHHHh-CCCCCccccc
Confidence            779999999999999999999999999999998 89999999999976543      236799999654 4558999999


Q ss_pred             HHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          308 RCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       308 WSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      |||||++|||++|.+||..            ..+......   +....       ...+...++++++||++||+.||++
T Consensus       212 wSlGvil~ell~G~~Pf~~------------~~~~~~~~~---i~~~~-------~~~p~~~~~~~~~li~~~l~~dp~~  269 (340)
T PTZ00426        212 WTLGIFIYEILVGCPPFYA------------NEPLLIYQK---ILEGI-------IYFPKFLDNNCKHLMKKLLSHDLTK  269 (340)
T ss_pred             cchhhHHHHHhcCCCCCCC------------CCHHHHHHH---HhcCC-------CCCCCCCCHHHHHHHHHHcccCHHH
Confidence            9999999999999999852            222222121   21111       1233457889999999999999999


Q ss_pred             CC-----CHHHHHcCCCCCCCCCC
Q 005958          388 RI-----SCLDALRHPFLCGPRWR  406 (667)
Q Consensus       388 Rp-----Sa~elL~HPwf~~~~~~  406 (667)
                      |+     +++++++||||.+..|.
T Consensus       270 R~~~~~~~~~~~~~hp~f~~~~~~  293 (340)
T PTZ00426        270 RYGNLKKGAQNVKEHPWFGNIDWV  293 (340)
T ss_pred             cCCCCCCCHHHHHcCCCcCCCCHH
Confidence            96     89999999999998763

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=1.5e-42  Score=369.74  Aligned_cols=240  Identities=20%  Similarity=0.246  Sum_probs=198.0

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEE
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVS  166 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~  166 (667)
                      +.||+|+||    .||+|.+..     +++.||||+++...     ......+|+.+++++.      ||||+++++++.
T Consensus         1 ~~lG~G~~g----~Vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~------hp~i~~~~~~~~   65 (323)
T cd05571           1 KLLGKGTFG----KVILVREKA-----TGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTR------HPFLTALKYSFQ   65 (323)
T ss_pred             CeeeeCCCe----EEEEEEECC-----CCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCC------CCCCCCEEEEEE
Confidence            479999999    999999987     79999999997532     2234578999999994      999999999998


Q ss_pred             ecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHH
Q 005958          167 SHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNY  246 (667)
Q Consensus       167 ~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~y  246 (667)
                           ..+.+|+||| |+++|+|.+++...+         .+++                    ..++.++.||+.||+|
T Consensus        66 -----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~~~~~qi~~~L~~  110 (323)
T cd05571          66 -----THDRLCFVME-YANGGELFFHLSRER---------VFSE--------------------DRARFYGAEIVSALGY  110 (323)
T ss_pred             -----cCCEEEEEEe-CCCCCcHHHHHHHcC---------CCCH--------------------HHHHHHHHHHHHHHHH
Confidence                 7889999999 999999999998754         4555                    4567799999999999


Q ss_pred             HHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHHHHHHH
Q 005958          247 LHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKM  317 (667)
Q Consensus       247 LHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyem  317 (667)
                      ||++||+||||||+|||++. ++.+||+|||+|+....         +.+.|+|||++ ....|+.++|||||||++|||
T Consensus       111 lH~~~ivHrDlkp~NIll~~-~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DiwSlG~il~el  188 (323)
T cd05571         111 LHSCDVVYRDLKLENLMLDK-DGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVL-EDNDYGRAVDWWGLGVVMYEM  188 (323)
T ss_pred             HHhCCeEeCCCCHHHEEECC-CCCEEEeeCCCCcccccCCCcccceecCccccChhhh-cCCCCCccccCcccchhhhhh
Confidence            99999999999999999998 89999999999875321         23789999955 455689999999999999999


Q ss_pred             HhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC-----CHH
Q 005958          318 VLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI-----SCL  392 (667)
Q Consensus       318 ltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp-----Sa~  392 (667)
                      ++|++||..            .+...+...   +...       .......+++++.+||.+||+.||++||     ++.
T Consensus       189 ltg~~Pf~~------------~~~~~~~~~---~~~~-------~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~  246 (323)
T cd05571         189 MCGRLPFYN------------QDHEKLFEL---ILME-------EIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPEDAK  246 (323)
T ss_pred             hcCCCCCCC------------CCHHHHHHH---HHcC-------CCCCCCCCCHHHHHHHHHHccCCHHHcCCCCCCCHH
Confidence            999999852            222222222   1111       1223456789999999999999999999     899


Q ss_pred             HHHcCCCCCCCCC
Q 005958          393 DALRHPFLCGPRW  405 (667)
Q Consensus       393 elL~HPwf~~~~~  405 (667)
                      ++++||||.+..|
T Consensus       247 ~ll~h~~f~~~~~  259 (323)
T cd05571         247 EIMEHRFFASINW  259 (323)
T ss_pred             HHHcCCCcCCCCH
Confidence            9999999999775

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=3.8e-42  Score=358.58  Aligned_cols=263  Identities=19%  Similarity=0.239  Sum_probs=199.8

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ++|++.+.||+|+||    .||+|+++.     +++.||+|++....    ..+...+|+++++.++      ||||+++
T Consensus         1 ~~y~~~~~lg~g~~~----~v~~~~~~~-----~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~------h~~iv~~   65 (287)
T cd07848           1 NKFEVLGVVGEGAYG----VVLKCRHKE-----TKEIVAIKKFKDSEENEEVKETTLRELKMLRTLK------QENIVEL   65 (287)
T ss_pred             CCceEEEEecccCCE----EEEEEEECC-----CCcEEEEEEEecccccccchhhHHHHHHHHHhCC------Cccccch
Confidence            479999999999999    999999987     78999999987532    2345678999999995      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     ..+.+|+||| |++++.|..+.....         .+++                    ..++.++.||+
T Consensus        66 ~~~~~-----~~~~~~lv~e-~~~~~~l~~~~~~~~---------~~~~--------------------~~~~~~~~qi~  110 (287)
T cd07848          66 KEAFR-----RRGKLYLVFE-YVEKNMLELLEEMPN---------GVPP--------------------EKVRSYIYQLI  110 (287)
T ss_pred             hhhEe-----cCCEEEEEEe-cCCCCHHHHHHhcCC---------CCCH--------------------HHHHHHHHHHH
Confidence            99998     7789999999 999866654443221         3444                    45788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC----------CCCCCCCcccccCCCCCCchhhHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE----------DGPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~----------~~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      .||.|||++||+||||||+||+++. ++.+||+|||++.....          +.+.|+|||++.+ ..++.++||||||
T Consensus       111 ~~L~~lH~~~i~H~dlkp~Nill~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~DiwslG  188 (287)
T cd07848         111 KAIHWCHKNDIVHRDIKPENLLISH-NDVLKLCDFGFARNLSEGSNANYTEYVATRWYRSPELLLG-APYGKAVDMWSVG  188 (287)
T ss_pred             HHHHHHHHCCeecCCCCHHHEEEcC-CCcEEEeeccCcccccccccccccccccccccCCcHHHcC-CCCCCchhHHhHH
Confidence            9999999999999999999999998 89999999999976532          2367999996654 4589999999999


Q ss_pred             HHHHHHHhCCCCChhh---hhhhhhhhccCCChhHHHHHHHHHhc--c-CCCCC----CCCcccccCCCHHHHHHHHHhh
Q 005958          312 FMMAKMVLRELMDPLI---FTKFKSFLTKGIDPSCLREFLLQVLN--R-NSSSG----NTGFQILDRNWGAGWNLLSLLL  381 (667)
Q Consensus       312 viLyemltG~~PF~~~---~~~~~~~~~~g~~~~~l~~~~~~~~~--~-~~~~~----~~~~~~~~~~s~e~~dLI~~~L  381 (667)
                      |++|||++|++||+..   .....+....+..+............  . ..+..    .........+++++++||.+||
T Consensus       189 vil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L  268 (287)
T cd07848         189 CILGELSDGQPLFPGESEIDQLFTIQKVLGPLPAEQMKLFYSNPRFHGLRFPAVNHPQSLERRYLGILSGVLLDLMKNLL  268 (287)
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHhhCCCCHHHHHhhhccchhcccccCcccCcccHHHhhhcccCHHHHHHHHHHc
Confidence            9999999999999742   22222223333333222222111000  0 00000    0000112346889999999999


Q ss_pred             hcCcCCCCCHHHHHcCCCC
Q 005958          382 ATKPSKRISCLDALRHPFL  400 (667)
Q Consensus       382 ~~DP~kRpSa~elL~HPwf  400 (667)
                      ++||++|||++|+|+||||
T Consensus       269 ~~~P~~R~s~~~~l~hp~f  287 (287)
T cd07848         269 KLNPTDRYLTEQCLNHPAF  287 (287)
T ss_pred             cCCcccCCCHHHHhcCCCC
Confidence            9999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.9e-42  Score=366.97  Aligned_cols=254  Identities=21%  Similarity=0.241  Sum_probs=204.7

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ++|++.+.||+|+||    .||+|++..     +++.||||++....     ....+.+|++++..+.      ||||++
T Consensus         1 ~~y~~~~~ig~G~~g----~Vy~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~------h~~iv~   65 (333)
T cd05600           1 KDFQILTQVGQGGYG----QVFLAKKKD-----TGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTK------SEWLVK   65 (333)
T ss_pred             CCcEEEEEEeecCCe----EEEEEEECC-----CCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCC------CCCCcc
Confidence            479999999999999    999999997     78999999997532     2345678999999994      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     ..+.+||||| |+++|+|.+++...+         .+++                    ..++.++.||
T Consensus        66 ~~~~~~-----~~~~~~lv~e-~~~g~~L~~~l~~~~---------~l~~--------------------~~~~~~~~qi  110 (333)
T cd05600          66 LLYAFQ-----DDEYLYLAME-YVPGGDFRTLLNNLG---------VLSE--------------------DHARFYMAEM  110 (333)
T ss_pred             EEEEEE-----cCCEEEEEEe-CCCCCCHHHHHHHcC---------CCCH--------------------HHHHHHHHHH
Confidence            999998     7889999999 999999999998654         4454                    4567899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC------CCCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~------~~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      +.||.|||++||+||||||+|||++. ++.+||+|||++.....      +.+.|+|||++.+ ..++.++|||||||++
T Consensus       111 ~~~l~~lH~~~ivH~dlkp~Nil~~~-~~~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwslG~il  188 (333)
T cd05600         111 FEAVDALHELGYIHRDLKPENFLIDA-SGHIKLTDFGLSKGIVTYANSVVGSPDYMAPEVLRG-KGYDFTVDYWSLGCML  188 (333)
T ss_pred             HHHHHHHHHCCccccCCCHHHEEECC-CCCEEEEeCcCCcccccccCCcccCccccChhHhcC-CCCCCccceecchHHH
Confidence            99999999999999999999999998 89999999999976533      3478999996554 4799999999999999


Q ss_pred             HHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHH
Q 005958          315 AKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDA  394 (667)
Q Consensus       315 yemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~el  394 (667)
                      |||++|.+||..            .+.......+.........  .........+++++++||.+||..+|++||++.++
T Consensus       189 ~ell~g~~pf~~------------~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~s~~~~~li~~~l~~~~~rr~s~~~l  254 (333)
T cd05600         189 YEFLCGFPPFSG------------STPNETWENLKYWKETLQR--PVYDDPRFNLSDEAWDLITKLINDPSRRFGSLEDI  254 (333)
T ss_pred             hhhhhCCCCCCC------------CCHHHHHHHHHhccccccC--CCCCccccccCHHHHHHHHHHhhChhhhcCCHHHH
Confidence            999999999852            2222222211111000000  00001113568899999999999999999999999


Q ss_pred             HcCCCCCCCCC
Q 005958          395 LRHPFLCGPRW  405 (667)
Q Consensus       395 L~HPwf~~~~~  405 (667)
                      ++||||.+..|
T Consensus       255 l~h~~~~~~~~  265 (333)
T cd05600         255 KNHPFFKEVDW  265 (333)
T ss_pred             HhCcccCCCCH
Confidence            99999998765

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=6.9e-42  Score=361.61  Aligned_cols=270  Identities=20%  Similarity=0.242  Sum_probs=209.1

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      .+++|++.+.||+|+||    .||+|++..     +++.||+|.++...   ......+|++++++++      ||||++
T Consensus         4 ~~~~y~~~~~lg~G~~g----~Vy~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~------h~~iv~   68 (309)
T cd07872           4 KMETYIKLEKLGEGTYA----TVFKGRSKL-----TENLVALKEIRLEHEEGAPCTAIREVSLLKDLK------HANIVT   68 (309)
T ss_pred             CCCceEEEEEecccCCE----EEEEEEecC-----CCCeEEEEEeeccccCCcchhHHHHHHHHHhCC------CCCcce
Confidence            45889999999999999    999999987     78999999987532   2235678999999995      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     ..+..++||| |+++ +|.+++...+.        .+++                    ..++.++.||
T Consensus        69 ~~~~~~-----~~~~~~lv~e-~~~~-~l~~~~~~~~~--------~~~~--------------------~~~~~~~~qi  113 (309)
T cd07872          69 LHDIVH-----TDKSLTLVFE-YLDK-DLKQYMDDCGN--------IMSM--------------------HNVKIFLYQI  113 (309)
T ss_pred             EEEEEe-----eCCeEEEEEe-CCCC-CHHHHHHhcCC--------CCCH--------------------HHHHHHHHHH
Confidence            999998     7788999999 9987 99998876431        2333                    4577899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      +.||+|||++||+||||||+|||++. ++.+||+|||++......         .+.|+|||.+.+...++.++||||||
T Consensus       114 ~~aL~~lH~~~ivH~dlkp~Nill~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG  192 (309)
T cd07872         114 LRGLAYCHRRKVLHRDLKPQNLLINE-RGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVG  192 (309)
T ss_pred             HHHHHHHHHCCeecCCCCHHHEEECC-CCCEEECccccceecCCCccccccccccccccCCHHHhCCCCCCcHHHHHHHH
Confidence            99999999999999999999999998 899999999998754321         26799999777777789999999999


Q ss_pred             HHHHHHHhCCCCChhh---hhhhhhhhccCCChhHHHHHHHH-----HhccCCCCCCCCcccccCCCHHHHHHHHHhhhc
Q 005958          312 FMMAKMVLRELMDPLI---FTKFKSFLTKGIDPSCLREFLLQ-----VLNRNSSSGNTGFQILDRNWGAGWNLLSLLLAT  383 (667)
Q Consensus       312 viLyemltG~~PF~~~---~~~~~~~~~~g~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~  383 (667)
                      |++|+|++|++||+..   +....++...+.+.......+..     ................+.+++++++||.+||+.
T Consensus       193 ~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~  272 (309)
T cd07872         193 CIFFEMASGRPLFPGSTVEDELHLIFRLLGTPTEETWPGISSNDEFKNYNFPKYKPQPLINHAPRLDTEGIELLTKFLQY  272 (309)
T ss_pred             HHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhhcchhhhhhhhcCccCCCchhhhccCCCHHHHHHHHHhccC
Confidence            9999999999999742   22222333334333322111110     000000000111123346788999999999999


Q ss_pred             CcCCCCCHHHHHcCCCCCCCC
Q 005958          384 KPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       384 DP~kRpSa~elL~HPwf~~~~  404 (667)
                      ||.+|||++|+|+||||+...
T Consensus       273 dp~~R~t~~e~l~h~~~~~~~  293 (309)
T cd07872         273 ESKKRISAEEAMKHAYFRSLG  293 (309)
T ss_pred             ChhhCCCHHHHhcChhhhhcc
Confidence            999999999999999999865

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.8e-42  Score=373.18  Aligned_cols=250  Identities=16%  Similarity=0.252  Sum_probs=203.2

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ++|++.+.||+|+||    +||+|++..     +++.||||++....     ....+.+|+++|+.+      +||||++
T Consensus         1 ~~y~~~~~lG~G~~g----~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l------~h~~iv~   65 (364)
T cd05599           1 DDFESIKVIGRGAFG----EVRLVQKKD-----TGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEA------DNPWVVK   65 (364)
T ss_pred             CCceEEEEEEecCCE----EEEEEEECC-----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhC------CCCCCcc
Confidence            479999999999999    999999998     79999999997532     223457899999999      4999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     +.+.+||||| |+++|+|.+++...+         .++|                    ..++.++.||
T Consensus        66 ~~~~~~-----~~~~~~lv~E-~~~~g~L~~~l~~~~---------~l~~--------------------~~~~~~~~qi  110 (364)
T cd05599          66 LYYSFQ-----DENYLYLIME-YLPGGDMMTLLMKKD---------TFTE--------------------EETRFYIAET  110 (364)
T ss_pred             eEEEEE-----cCCeEEEEEC-CCCCcHHHHHHHHcC---------CCCH--------------------HHHHHHHHHH
Confidence            999999     7889999999 999999999998754         4555                    4567899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC------------------------------------
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE------------------------------------  284 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~------------------------------------  284 (667)
                      +.||+|||++||+||||||+|||++. ++.+||+|||++..+..                                    
T Consensus       111 ~~aL~~lH~~~ivH~Dlkp~NIl~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (364)
T cd05599         111 ILAIDSIHKLGYIHRDIKPDNLLLDA-KGHIKLSDFGLCTGLKKSHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWK  189 (364)
T ss_pred             HHHHHHHHHCCeEeccCCHHHeEECC-CCCEEEeecccceeccccccccccccccccccccccccccccccccccccchh
Confidence            99999999999999999999999998 89999999999865321                                    


Q ss_pred             -----------CCCCCCCcccccCCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhc
Q 005958          285 -----------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLN  353 (667)
Q Consensus       285 -----------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~  353 (667)
                                 +.+.|+|||++ ....|+.++|||||||++|||++|.+||...            .+...   ...+..
T Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DiwSlG~il~el~~G~~Pf~~~------------~~~~~---~~~i~~  253 (364)
T cd05599         190 RNRRALAYSTVGTPDYIAPEVF-LQTGYNKECDWWSLGVIMYEMLVGYPPFCSD------------NPQET---YRKIIN  253 (364)
T ss_pred             hcccccccccccCccccCHHHH-cCCCCCCeeeeecchhHHHHhhcCCCCCCCC------------CHHHH---HHHHHc
Confidence                       34679999955 4556899999999999999999999999522            22111   111111


Q ss_pred             cCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC---HHHHHcCCCCCCCCCC
Q 005958          354 RNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS---CLDALRHPFLCGPRWR  406 (667)
Q Consensus       354 ~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS---a~elL~HPwf~~~~~~  406 (667)
                      ...   ...++....+++++++||.+||. +|.+|++   ++|+|+||||++.+|.
T Consensus       254 ~~~---~~~~~~~~~~s~~~~~li~~ll~-~p~~R~~~~~~~~ll~h~~~~~~~~~  305 (364)
T cd05599         254 WKE---TLQFPDEVPLSPEAKDLIKRLCC-EAERRLGNNGVNEIKSHPFFKGVDWE  305 (364)
T ss_pred             CCC---ccCCCCCCCCCHHHHHHHHHHcc-CHhhcCCCCCHHHHhcCCCcCCCCHH
Confidence            110   01112223568999999999997 9999998   9999999999998753

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>PTZ00284 protein kinase; Provisional

Probab=100.00  E-value=2.9e-41  Score=378.21  Aligned_cols=274  Identities=18%  Similarity=0.212  Sum_probs=204.3

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-hhHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      .++|++.+.||+|+||    +||+|.+..     +++.||||+++.. ...+....|+++++.+++....+|.+|+++++
T Consensus       128 ~~~y~i~~~lG~G~fg----~V~~a~~~~-----~~~~vAvK~i~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~  198 (467)
T PTZ00284        128 TQRFKILSLLGEGTFG----KVVEAWDRK-----RKEYCAVKIVRNVPKYTRDAKIEIQFMEKVRQADPADRFPLMKIQR  198 (467)
T ss_pred             CCcEEEEEEEEeccCE----EEEEEEEcC-----CCeEEEEEEEecchhhHHHHHHHHHHHHHHhhcCcccCcceeeeEE
Confidence            4789999999999999    999999987     7899999999652 23345678999999998666667788999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++..    ..+++||||| ++++ +|.+++.+++         .+++                    ..++.|+.||+.|
T Consensus       199 ~~~~----~~~~~~iv~~-~~g~-~l~~~l~~~~---------~l~~--------------------~~~~~i~~qi~~a  243 (467)
T PTZ00284        199 YFQN----ETGHMCIVMP-KYGP-CLLDWIMKHG---------PFSH--------------------RHLAQIIFQTGVA  243 (467)
T ss_pred             EEEc----CCceEEEEEe-ccCC-CHHHHHHHcC---------CCCH--------------------HHHHHHHHHHHHH
Confidence            9872    3568999999 8865 9999987654         4454                    4577899999999


Q ss_pred             HHHHHH-CCCcccCCCCCcEEEcCCCC----------------eEEEeeecccccccC------CCCCCCCcccccCCCC
Q 005958          244 VNYLHS-HGLAHTELRLENVHISPVDR----------------HIKVGILGNAADFYE------DGPNNSSPDSNMDRRQ  300 (667)
Q Consensus       244 L~yLHs-~gIvHrDLKPeNILl~~~~~----------------~vKL~DFGlA~~~~~------~~~~Y~APE~l~~~~~  300 (667)
                      |+|||+ .|||||||||+|||++. ++                .+||+|||.+.....      +.+.|+|||++.+ ..
T Consensus       244 L~yLH~~~gIiHrDlKP~NILl~~-~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~~~~~~~~~~gt~~Y~APE~~~~-~~  321 (467)
T PTZ00284        244 LDYFHTELHLMHTDLKPENILMET-SDTVVDPVTNRALPPDPCRVRICDLGGCCDERHSRTAIVSTRHYRSPEVVLG-LG  321 (467)
T ss_pred             HHHHHhcCCeecCCCCHHHEEEec-CCcccccccccccCCCCceEEECCCCccccCccccccccCCccccCcHHhhc-CC
Confidence            999998 59999999999999986 33                599999998865432      2378999996654 56


Q ss_pred             CCchhhHHHHHHHHHHHHhCCCCChhh---hhhhhhhhccCCChhHHHHH---------HHHHhccCCCCCCCCc-----
Q 005958          301 MMIAFDMRCVGFMMAKMVLRELMDPLI---FTKFKSFLTKGIDPSCLREF---------LLQVLNRNSSSGNTGF-----  363 (667)
Q Consensus       301 ys~ksDIWSLGviLyemltG~~PF~~~---~~~~~~~~~~g~~~~~l~~~---------~~~~~~~~~~~~~~~~-----  363 (667)
                      |+.++|||||||++|||++|++||...   ..+..+....|..+..+...         +.......+......+     
T Consensus       322 ~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (467)
T PTZ00284        322 WMYSTDMWSMGCIIYELYTGKLLYDTHDNLEHLHLMEKTLGRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIAR  401 (467)
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHcCCCCHHHHhhccchhHHHHhhhcccccccCCHHHHHhhhc
Confidence            999999999999999999999999742   22233334445444333221         1000000000000000     


Q ss_pred             --cc-ccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          364 --QI-LDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       364 --~~-~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                        .. ....++.+.|||.+||++||++|||++|+|+||||....
T Consensus       402 ~~~~~~~~~~~~~~dli~~mL~~dP~~R~ta~e~L~Hp~~~~~~  445 (467)
T PTZ00284        402 ARPVREVIRDDLLCDLIYGLLHYDRQKRLNARQMTTHPYVLKYY  445 (467)
T ss_pred             ccchhhhhchHHHHHHHHHhCCcChhhCCCHHHHhcCccccccC
Confidence              00 001246788999999999999999999999999998754

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=5.5e-42  Score=358.46  Aligned_cols=251  Identities=15%  Similarity=0.178  Sum_probs=201.4

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      .|++.+.||+|+||    .||+|.+..     +++.||+|.+....     ......+|+.+++++      +|+||+++
T Consensus         1 ~f~~~~~lg~G~~g----~V~~~~~~~-----~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l------~~~~iv~~   65 (285)
T cd05631           1 TFRHYRVLGKGGFG----EVCACQVRA-----TGKMYACKKLEKKRIKKRKGEAMALNEKRILEKV------NSRFVVSL   65 (285)
T ss_pred             CceEEEEEecCCCE----EEEEEEEec-----CCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhc------CCCcEEEE
Confidence            48899999999999    999999998     79999999987532     123457899999999      49999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     +.+.+++||| |+++|+|.+++.....       ..+++                    ..+..++.|++
T Consensus        66 ~~~~~-----~~~~~~lv~e-~~~~g~L~~~~~~~~~-------~~~~~--------------------~~~~~~~~qi~  112 (285)
T cd05631          66 AYAYE-----TKDALCLVLT-IMNGGDLKFHIYNMGN-------PGFDE--------------------QRAIFYAAELC  112 (285)
T ss_pred             EEEEc-----cCCeEEEEEE-ecCCCcHHHHHHhhCC-------CCCCH--------------------HHHHHHHHHHH
Confidence            99998     7789999999 9999999988865321       13444                    45678999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC--------CCCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE--------DGPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~--------~~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      .||+|||++||+||||||+|||++. ++.+||+|||++.....        +...|+|||++. ...|+.++|||||||+
T Consensus       113 ~~l~~lH~~~iiH~dikp~Nill~~-~~~~kl~Dfg~~~~~~~~~~~~~~~g~~~y~aPE~~~-~~~~~~~~DvwslGvi  190 (285)
T cd05631         113 CGLEDLQRERIVYRDLKPENILLDD-RGHIRISDLGLAVQIPEGETVRGRVGTVGYMAPEVIN-NEKYTFSPDWWGLGCL  190 (285)
T ss_pred             HHHHHHHhCCEEeCCCCHHHEEECC-CCCEEEeeCCCcEEcCCCCeecCCCCCCCccCHhhhc-CCCCCcccCchhHHHH
Confidence            9999999999999999999999998 89999999999976532        236899999654 4568999999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC---
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS---  390 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS---  390 (667)
                      +|||++|++||....            .....+.+.......      ........++++.+||.+||+.||++||+   
T Consensus       191 l~el~~g~~pf~~~~------------~~~~~~~~~~~~~~~------~~~~~~~~s~~~~~li~~~l~~~P~~R~~~~~  252 (285)
T cd05631         191 IYEMIQGQSPFRKRK------------ERVKREEVDRRVKED------QEEYSEKFSEDAKSICRMLLTKNPKERLGCRG  252 (285)
T ss_pred             HHHHHhCCCCCCCCC------------cchhHHHHHHHhhcc------cccCCccCCHHHHHHHHHHhhcCHHHhcCCCC
Confidence            999999999996321            111111111111110      12234567899999999999999999997   


Q ss_pred             --HHHHHcCCCCCCCCC
Q 005958          391 --CLDALRHPFLCGPRW  405 (667)
Q Consensus       391 --a~elL~HPwf~~~~~  405 (667)
                        ++++++||||.+..|
T Consensus       253 ~~~~~~~~h~~~~~~~~  269 (285)
T cd05631         253 NGAAGVKQHPIFKNINF  269 (285)
T ss_pred             CCHHHHhcCHhhcCCCH
Confidence              899999999999874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=5.9e-42  Score=366.01  Aligned_cols=254  Identities=18%  Similarity=0.263  Sum_probs=204.2

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh------hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ------AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~------~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      +|++++.||+|+||    +||+|++...  ..+++.||+|++.+..      ..+...+|+.+++.++     +||||++
T Consensus         1 ~y~~~~~lg~G~~g----~Vy~~~~~~~--~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~-----~~~~i~~   69 (332)
T cd05614           1 NFELLKVLGTGAYG----KVFLVRKVTG--HDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVR-----QSPFLVT   69 (332)
T ss_pred             CceEEEEEeecCCE----EEEEEEEccc--CCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhcc-----CCCCccc
Confidence            58999999999999    9999987531  1268999999997532      2234578999999996     6999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     ..+.+|+||| |+++|+|.+++..++         .+++                    ..++.++.||
T Consensus        70 ~~~~~~-----~~~~~~lv~e-~~~~g~L~~~l~~~~---------~~~~--------------------~~~~~~~~qi  114 (332)
T cd05614          70 LHYAFQ-----TEAKLHLILD-YVSGGEMFTHLYQRD---------NFSE--------------------DEVRFYSGEI  114 (332)
T ss_pred             EEEEEe-----cCCEEEEEEe-CCCCCcHHHHHHHcC---------CCCH--------------------HHHHHHHHHH
Confidence            999998     7789999999 999999999998654         4554                    4577899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC----------CCCCCCCcccccCCCCCCchhhHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE----------DGPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~----------~~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      +.||.|||++||+||||||+|||++. ++.+||+|||++..+..          +.+.|+|||++.+...++.++|||||
T Consensus       115 ~~~l~~lH~~~ivHrDlkp~Nili~~-~~~~kl~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Diwsl  193 (332)
T cd05614         115 ILALEHLHKLGIVYRDIKLENILLDS-EGHVVLTDFGLSKEFLSEEKERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSL  193 (332)
T ss_pred             HHHHHHHHHCCcEecCCCHHHeEECC-CCCEEEeeCcCCccccccCCCccccccCCccccCHHHhcCCCCCCCccccccc
Confidence            99999999999999999999999998 89999999999975422          23679999977666668999999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC-
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI-  389 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp-  389 (667)
                      ||++|||++|..||.....        ....   ...........       ......+++++++||.+||+.||++|| 
T Consensus       194 G~il~elltg~~pf~~~~~--------~~~~---~~~~~~~~~~~-------~~~~~~~~~~~~~li~~~l~~dp~~R~~  255 (332)
T cd05614         194 GILIFELLTGASPFTLEGE--------RNTQ---SEVSRRILKCD-------PPFPSFIGPEAQDLLHKLLRKDPKKRLG  255 (332)
T ss_pred             hhhhhhhhcCCCCCCCCCC--------CCCH---HHHHHHHhcCC-------CCCCCCCCHHHHHHHHHHcCCCHHHcCC
Confidence            9999999999999852110        0111   11112222111       123345788999999999999999999 


Q ss_pred             ----CHHHHHcCCCCCCCCC
Q 005958          390 ----SCLDALRHPFLCGPRW  405 (667)
Q Consensus       390 ----Sa~elL~HPwf~~~~~  405 (667)
                          +++++++||||++..|
T Consensus       256 ~~~~~~~~~l~h~~~~~~~~  275 (332)
T cd05614         256 AGPQGASEIKEHPFFKGLDW  275 (332)
T ss_pred             CCCCCHHHHHcCCCcCCCCH
Confidence                8899999999998764

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.1e-42  Score=374.18  Aligned_cols=249  Identities=17%  Similarity=0.227  Sum_probs=200.1

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ++|++++.||+|+||    .||+|.+..     +++.||||++.+..     ..+.+.+|+++++.+      +||||++
T Consensus         1 ~~y~~~~~lG~G~~g----~Vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l------~hp~iv~   65 (377)
T cd05629           1 EDFHTVKVIGKGAFG----EVRLVQKKD-----TGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAES------DSPWVVS   65 (377)
T ss_pred             CCceEeEEEeecCCE----EEEEEEECC-----CCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhC------CCCCcce
Confidence            479999999999999    999999998     89999999986532     224567899999998      5999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     +.+.+|+||| |+++|+|.+++...+         .+++                    ..++.++.||
T Consensus        66 ~~~~~~-----~~~~~~lv~E-~~~gg~L~~~l~~~~---------~~~~--------------------~~~~~~~~ql  110 (377)
T cd05629          66 LYYSFQ-----DAQYLYLIME-FLPGGDLMTMLIKYD---------TFSE--------------------DVTRFYMAEC  110 (377)
T ss_pred             EEEEEE-----cCCeeEEEEe-CCCCCcHHHHHHhcC---------CCCH--------------------HHHHHHHHHH
Confidence            999999     7889999999 999999999998654         4454                    4567899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeeccccccc-------------------------------------
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFY-------------------------------------  283 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~-------------------------------------  283 (667)
                      +.||+|||++||+||||||+|||++. ++.+||+|||+|+.+.                                     
T Consensus       111 ~~aL~~LH~~givHrDlkp~NIll~~-~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (377)
T cd05629         111 VLAIEAVHKLGFIHRDIKPDNILIDR-GGHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMS  189 (377)
T ss_pred             HHHHHHHHhCCeeccCCCHHHEEECC-CCCEEEeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999998 8999999999986321                                     


Q ss_pred             -------------------CCCCCCCCcccccCCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHH
Q 005958          284 -------------------EDGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCL  344 (667)
Q Consensus       284 -------------------~~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l  344 (667)
                                         .+.+.|+|||++. ...|+.++|||||||++|||++|.+||..            ......
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwSlGvil~elltG~~Pf~~------------~~~~~~  256 (377)
T cd05629         190 SKDQIATWKKNRRLMAYSTVGTPDYIAPEIFL-QQGYGQECDWWSLGAIMFECLIGWPPFCS------------ENSHET  256 (377)
T ss_pred             chhhhhhhhhcccccccccCCCccccCHHHHc-cCCCCCceeeEecchhhhhhhcCCCCCCC------------CCHHHH
Confidence                               1346799999654 45689999999999999999999999952            222111


Q ss_pred             HHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCC---CCHHHHHcCCCCCCCCC
Q 005958          345 REFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR---ISCLDALRHPFLCGPRW  405 (667)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kR---pSa~elL~HPwf~~~~~  405 (667)
                      ..   .+....   ....++....++.++++||.+||. +|.+|   +++.|+++||||.+..|
T Consensus       257 ~~---~i~~~~---~~~~~p~~~~~s~~~~dli~~lL~-~~~~r~~r~~~~~~l~hp~~~~~~~  313 (377)
T cd05629         257 YR---KIINWR---ETLYFPDDIHLSVEAEDLIRRLIT-NAENRLGRGGAHEIKSHPFFRGVDW  313 (377)
T ss_pred             HH---HHHccC---CccCCCCCCCCCHHHHHHHHHHhc-CHhhcCCCCCHHHHhcCCCcCCCCH
Confidence            11   111100   011122223578899999999998 77776   59999999999998775

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.7e-43  Score=343.06  Aligned_cols=253  Identities=20%  Similarity=0.265  Sum_probs=214.0

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCC
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLM  153 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~  153 (667)
                      ....|.+++|++++.||+|.||    .||+|+.+.     ++-.||+|++.+.+     ...++.||++|...|+     
T Consensus        15 ~~~~~~l~dfeigr~LgkgkFG----~vYlarekk-----s~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~-----   80 (281)
T KOG0580|consen   15 ATKTWTLDDFEIGRPLGKGKFG----NVYLAREKK-----SLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLR-----   80 (281)
T ss_pred             cccccchhhccccccccCCccc----cEeEeeecc-----CCcEEEEeeeeHHHHHHhcchhhhhheeEeecccC-----
Confidence            4567889999999999999999    999999998     89999999998754     3456799999999995     


Q ss_pred             CCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHH
Q 005958          154 YHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLI  233 (667)
Q Consensus       154 ~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i  233 (667)
                       ||||+++|++|.     +...+|+++| |...|+|+..+....       ..+++|..                    .
T Consensus        81 -hpnilrlY~~fh-----d~~riyLilE-ya~~gel~k~L~~~~-------~~~f~e~~--------------------~  126 (281)
T KOG0580|consen   81 -HPNILRLYGYFH-----DSKRIYLILE-YAPRGELYKDLQEGR-------MKRFDEQR--------------------A  126 (281)
T ss_pred             -CccHHhhhhhee-----ccceeEEEEE-ecCCchHHHHHHhcc-------cccccccc--------------------h
Confidence             999999999999     8899999999 999999999998532       12577654                    4


Q ss_pred             HHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-------CCCCCcccccCCCCCCchhh
Q 005958          234 RLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-------PNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       234 ~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-------~~Y~APE~l~~~~~ys~ksD  306 (667)
                      +.|++|++.||.|+|.++||||||||+|+|++. .+.+||+|||.+.....+.       ..|.+|| +.....++..+|
T Consensus       127 a~Yi~q~A~Al~y~h~k~VIhRdiKpenlLlg~-~~~lkiAdfGwsV~~p~~kR~tlcgt~dyl~pE-mv~~~~hd~~Vd  204 (281)
T KOG0580|consen  127 ATYIKQLANALLYCHLKRVIHRDIKPENLLLGS-AGELKIADFGWSVHAPSNKRKTLCGTLDYLPPE-MVEGRGHDKFVD  204 (281)
T ss_pred             hHHHHHHHHHHHHhccCCcccCCCCHHHhccCC-CCCeeccCCCceeecCCCCceeeecccccCCHh-hcCCCCccchhh
Confidence            669999999999999999999999999999999 9999999999997765433       5699999 556667999999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          307 MRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       307 IWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      +|++|++.||++.|.+||....            ..   +..+++...       .+.++..++.++.|||.+||.++|.
T Consensus       205 ~w~lgvl~yeflvg~ppFes~~------------~~---etYkrI~k~-------~~~~p~~is~~a~dlI~~ll~~~p~  262 (281)
T KOG0580|consen  205 LWSLGVLCYEFLVGLPPFESQS------------HS---ETYKRIRKV-------DLKFPSTISGGAADLISRLLVKNPI  262 (281)
T ss_pred             HHHHHHHHHHHHhcCCchhhhh------------hH---HHHHHHHHc-------cccCCcccChhHHHHHHHHhccCcc
Confidence            9999999999999999996321            11   222222211       2334467899999999999999999


Q ss_pred             CCCCHHHHHcCCCCCCC
Q 005958          387 KRISCLDALRHPFLCGP  403 (667)
Q Consensus       387 kRpSa~elL~HPwf~~~  403 (667)
                      +|.+..|++.|||+...
T Consensus       263 ~r~~l~~v~~hpwI~a~  279 (281)
T KOG0580|consen  263 ERLALTEVMDHPWIVAN  279 (281)
T ss_pred             ccccHHHHhhhHHHHhc
Confidence            99999999999998653

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-42  Score=368.28  Aligned_cols=252  Identities=15%  Similarity=0.178  Sum_probs=217.7

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh----HHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA----QRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~----~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      +-|.+.+.||+|.|.    +|-+|+|..     +|..||||++.+.+.    ...+..|+..|+.++      |||||++
T Consensus        18 GLYDLekTlG~GHFA----VVKLArHVF-----TGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQ------HpNiVRL   82 (864)
T KOG4717|consen   18 GLYDLEKTLGRGHFA----VVKLARHVF-----TGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQ------HPNIVRL   82 (864)
T ss_pred             eeehhhhhhcCCcee----hhhhhhhhc-----ccceeEEEEecccccchhhhhHHHHHHHHHHHhc------CcCeeee
Confidence            569999999999999    999999998     899999999987433    346789999999995      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      |++..     ....+|||+| +-++|||++||.++.        -.+.|+                    ..+.|+.||+
T Consensus        83 YEViD-----TQTKlyLiLE-LGD~GDl~DyImKHe--------~Gl~E~--------------------La~kYF~QI~  128 (864)
T KOG4717|consen   83 YEVID-----TQTKLYLILE-LGDGGDLFDYIMKHE--------EGLNED--------------------LAKKYFAQIV  128 (864)
T ss_pred             eehhc-----ccceEEEEEE-ecCCchHHHHHHhhh--------ccccHH--------------------HHHHHHHHHH
Confidence            99998     7889999999 999999999998875        256664                    5677999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC--------CCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG--------PNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~--------~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      .|+.|||...+|||||||+|+.+-++-|-+||+|||++..+.++.        ..|.|||++++..+-.+++||||||||
T Consensus       129 ~AI~YCHqLHVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG~kL~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVI  208 (864)
T KOG4717|consen  129 HAISYCHQLHVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPGKKLTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVI  208 (864)
T ss_pred             HHHHHHhhhhhhcccCCcceeEEeeecCceEeeeccccccCCCcchhhcccchhhccCchhhhcCccCCcchhhhHHHHH
Confidence            999999999999999999999998878999999999999888765        579999998888877889999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      ||.|++|++||++           .++.+.+..++.           ..+..+..+|.+++|||..||..||.+|.+.++
T Consensus       209 LyMLVCGq~PFqe-----------ANDSETLTmImD-----------CKYtvPshvS~eCrdLI~sMLvRdPkkRAslEe  266 (864)
T KOG4717|consen  209 LYMLVCGQPPFQE-----------ANDSETLTMIMD-----------CKYTVPSHVSKECRDLIQSMLVRDPKKRASLEE  266 (864)
T ss_pred             HHHHHhCCCcccc-----------ccchhhhhhhhc-----------ccccCchhhhHHHHHHHHHHHhcCchhhccHHH
Confidence            9999999999963           333333333321           134556778999999999999999999999999


Q ss_pred             HHcCCCCCCCCCCCC
Q 005958          394 ALRHPFLCGPRWRVD  408 (667)
Q Consensus       394 lL~HPwf~~~~~~~~  408 (667)
                      |..|+|++..+....
T Consensus       267 I~s~~Wlq~~D~~~s  281 (864)
T KOG4717|consen  267 IVSTSWLQAGDRGLS  281 (864)
T ss_pred             HhccccccCCCCCcc
Confidence            999999999875443

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=3.6e-43  Score=363.33  Aligned_cols=243  Identities=19%  Similarity=0.280  Sum_probs=206.9

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      ..+|++.+.||+|+||    .|-+|+...     .|+.||||.|++..     +.-.+.|||+||..|      +||||+
T Consensus        52 kHRyE~~etLGkGTYG----KVk~A~e~~-----sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsL------NHPhII  116 (668)
T KOG0611|consen   52 KHRYEITETLGKGTYG----KVKLAYEHK-----SGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSL------NHPHII  116 (668)
T ss_pred             hhHHHHHHHhcCCccc----ceeehhhcc-----CCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhc------CCCcee
Confidence            4789999999999999    999999987     89999999998743     223468999999999      699999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++|++|+     +.+.+.|||| |..+|+|++||.+++         .|+|.+                    .+.+++|
T Consensus       117 ~IyEVFE-----NkdKIvivME-YaS~GeLYDYiSer~---------~LsErE--------------------aRhfFRQ  161 (668)
T KOG0611|consen  117 QIYEVFE-----NKDKIVIVME-YASGGELYDYISERG---------SLSERE--------------------ARHFFRQ  161 (668)
T ss_pred             ehhhhhc-----CCceEEEEEE-ecCCccHHHHHHHhc---------cccHHH--------------------HHHHHHH
Confidence            9999999     8899999999 999999999999876         777765                    4679999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC--------CCCCCcccccCCCCCCchhhHHHHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG--------PNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~--------~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      |+.|+.|||.++++|||||.+|||++. ++++||+|||++..+....        |.|.+||++.+..+-++.+|-||||
T Consensus       162 IvSAVhYCHknrVvHRDLKLENILLD~-N~NiKIADFGLSNly~~~kfLqTFCGSPLYASPEIvNG~PY~GPEVDsWsLG  240 (668)
T KOG0611|consen  162 IVSAVHYCHKNRVVHRDLKLENILLDQ-NNNIKIADFGLSNLYADKKFLQTFCGSPLYASPEIVNGTPYKGPEVDSWSLG  240 (668)
T ss_pred             HHHHHHHHhhccceecccchhheeecC-CCCeeeeccchhhhhccccHHHHhcCCcccCCccccCCCCCCCCccchhhHH
Confidence            999999999999999999999999999 9999999999998776553        8999999665655558999999999


Q ss_pred             HHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH
Q 005958          312 FMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC  391 (667)
Q Consensus       312 viLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa  391 (667)
                      |+||.|+.|..||.            |.+...+...+..   +...        .+.-..++.-||+.||..||++|.|+
T Consensus       241 vLLYtLVyGtMPFD------------G~Dhk~lvrQIs~---GaYr--------EP~~PSdA~gLIRwmLmVNP~RRATi  297 (668)
T KOG0611|consen  241 VLLYTLVYGTMPFD------------GRDHKRLVRQISR---GAYR--------EPETPSDASGLIRWMLMVNPERRATI  297 (668)
T ss_pred             HHHHHHhhcccccC------------CchHHHHHHHhhc---cccc--------CCCCCchHHHHHHHHHhcCcccchhH
Confidence            99999999999995            4343333333222   1111        12234588999999999999999999


Q ss_pred             HHHHcCCCCC
Q 005958          392 LDALRHPFLC  401 (667)
Q Consensus       392 ~elL~HPwf~  401 (667)
                      +++-.|-|++
T Consensus       298 eDiAsHWWvN  307 (668)
T KOG0611|consen  298 EDIASHWWVN  307 (668)
T ss_pred             HHHhhhheee
Confidence            9999999985

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=1.7e-41  Score=354.29  Aligned_cols=273  Identities=21%  Similarity=0.248  Sum_probs=199.9

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ++|++.+.||+|+||    +||+|++...    .++.||+|.++...    ......+|+.+++.++   .+.||||+++
T Consensus         1 ~~Y~~~~~lg~G~~g----~Vy~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~---~~~hpniv~~   69 (290)
T cd07862           1 QQYECVAEIGEGAYG----KVFKARDLKN----GGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLE---TFEHPNVVRL   69 (290)
T ss_pred             CCcceeeEeccCCCe----EEEEEEEcCC----CCeEEEEEEEecccCCCCchHHHHHHHHHHHhhc---ccCCCCcceE
Confidence            479999999999999    9999998652    46889999987522    2234577888888774   3369999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++..........+++||| |+++ +|.+++.....       ..+++                    ..++.++.||+
T Consensus        70 ~~~~~~~~~~~~~~~~lv~e-~~~~-~l~~~~~~~~~-------~~~~~--------------------~~~~~i~~qi~  120 (290)
T cd07862          70 FDVCTVSRTDRETKLTLVFE-HVDQ-DLTTYLDKVPE-------PGVPT--------------------ETIKDMMFQLL  120 (290)
T ss_pred             EEEEecccCCCCCcEEEEEc-cCCC-CHHHHHHhCCC-------CCCCH--------------------HHHHHHHHHHH
Confidence            99986433335667999999 9986 99999976320       12333                    56788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      .||.|||++||+||||||+|||++. ++.+||+|||++......        .+.|+|||.+. ...++.++|||||||+
T Consensus       121 ~aL~~lH~~~iiH~dlkp~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~DiwslG~i  198 (290)
T cd07862         121 RGLDFLHSHRVVHRDLKPQNILVTS-SGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLL-QSSYATPVDLWSVGCI  198 (290)
T ss_pred             HHHHHHHHCCeeeCCCCHHHEEEcC-CCCEEEccccceEeccCCcccccccccccccChHHHh-CCCCCCccchHHHHHH
Confidence            9999999999999999999999998 899999999999765432        36799999654 4568999999999999


Q ss_pred             HHHHHhCCCCChhh---hhhhhhhhccCCChh-HHHHHHHHHhccCCCCCCCCc-ccccCCCHHHHHHHHHhhhcCcCCC
Q 005958          314 MAKMVLRELMDPLI---FTKFKSFLTKGIDPS-CLREFLLQVLNRNSSSGNTGF-QILDRNWGAGWNLLSLLLATKPSKR  388 (667)
Q Consensus       314 LyemltG~~PF~~~---~~~~~~~~~~g~~~~-~l~~~~~~~~~~~~~~~~~~~-~~~~~~s~e~~dLI~~~L~~DP~kR  388 (667)
                      +|||++|++||...   .....+....+.+.. .+................... ...+..++.+++||.+||+.||++|
T Consensus       199 l~el~~g~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R  278 (290)
T cd07862         199 FAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKR  278 (290)
T ss_pred             HHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhchhhhcccchhccCCCCCCHHHHccCCCHHHHHHHHHHhccCchhc
Confidence            99999999999732   222222222222211 111100000000000000001 1234678899999999999999999


Q ss_pred             CCHHHHHcCCCC
Q 005958          389 ISCLDALRHPFL  400 (667)
Q Consensus       389 pSa~elL~HPwf  400 (667)
                      ||+.|+|+||||
T Consensus       279 ~s~~~~l~hp~f  290 (290)
T cd07862         279 ISAYSALSHPYF  290 (290)
T ss_pred             CCHHHHhcCCCC
Confidence            999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=4.4e-42  Score=373.60  Aligned_cols=249  Identities=18%  Similarity=0.235  Sum_probs=201.3

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ++|++++.||+|+||    .||+|++..     +++.||||++.+..     ....+.+|+++|+++.      ||||++
T Consensus         1 ~~y~~~~~lG~G~~g----~V~~a~~~~-----~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~------h~~iv~   65 (376)
T cd05598           1 SMFVKIKTIGIGAFG----EVCLVRKVD-----TNALYAMKTLRKADVLMRNQAAHVKAERDILAEAD------NEWVVK   65 (376)
T ss_pred             CCceEEEEEEeCCCe----EEEEEEECC-----CCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCC------CCCcce
Confidence            479999999999999    999999998     79999999997532     2244678999999994      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++.+.     +++.+|+||| |+++|+|.+++.+.+         .+++                    ..++.++.||
T Consensus        66 ~~~~~~-----~~~~~~lv~E-~~~~g~L~~~i~~~~---------~~~~--------------------~~~~~~~~qi  110 (376)
T cd05598          66 LYYSFQ-----DKDNLYFVMD-YIPGGDMMSLLIRLG---------IFEE--------------------DLARFYIAEL  110 (376)
T ss_pred             EEEEEE-----cCCEEEEEEe-CCCCCcHHHHHHhcC---------CCCH--------------------HHHHHHHHHH
Confidence            999999     7889999999 999999999998754         3444                    4567899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeeccccccc-------------------------------------
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFY-------------------------------------  283 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~-------------------------------------  283 (667)
                      +.||+|||++||+||||||+|||++. ++.+||+|||+|..+.                                     
T Consensus       111 ~~al~~lH~~~ivHrDlkp~Nill~~-~~~ikL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (376)
T cd05598         111 TCAIESVHKMGFIHRDIKPDNILIDR-DGHIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLE  189 (376)
T ss_pred             HHHHHHHHHCCeEeCCCCHHHEEECC-CCCEEEEeCCCCccccccccccccccccccccccccccccccccccccccchh
Confidence            99999999999999999999999998 8999999999975321                                     


Q ss_pred             ---------------CCCCCCCCcccccCCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHH
Q 005958          284 ---------------EDGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFL  348 (667)
Q Consensus       284 ---------------~~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~  348 (667)
                                     .+.+.|+|||++ ....++.++|||||||++|||++|++||...            .+......+
T Consensus       190 ~~~~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DiwSlGvilyell~G~~Pf~~~------------~~~~~~~~i  256 (376)
T cd05598         190 RRRKRQHQRCLAHSLVGTPNYIAPEVL-LRTGYTQLCDWWSVGVILYEMLVGQPPFLAD------------TPAETQLKV  256 (376)
T ss_pred             hhhhhhcccccccccCCCccccCHHHH-cCCCCCcceeeeeccceeeehhhCCCCCCCC------------CHHHHHHHH
Confidence                           134679999955 4556899999999999999999999999522            221111111


Q ss_pred             HHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC---CHHHHHcCCCCCCCCC
Q 005958          349 LQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI---SCLDALRHPFLCGPRW  405 (667)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp---Sa~elL~HPwf~~~~~  405 (667)
                      .   ...   .....+....+++++.+||.+|+ .+|.+|+   ++.++++||||++.+|
T Consensus       257 ~---~~~---~~~~~~~~~~~s~~~~~li~~l~-~~p~~R~~~~t~~ell~h~~~~~~~~  309 (376)
T cd05598         257 I---NWE---TTLHIPSQAKLSREASDLILRLC-CGAEDRLGKNGADEIKAHPFFKGIDF  309 (376)
T ss_pred             h---ccC---ccccCCCCCCCCHHHHHHHHHHh-cCHhhcCCCCCHHHHhCCCCcCCCCH
Confidence            1   100   01112223467899999999977 5999999   9999999999998764

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=6.9e-42  Score=373.05  Aligned_cols=250  Identities=18%  Similarity=0.239  Sum_probs=201.6

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ..|++++.||+|+||    +||+|++..     +++.||+|++.+..     ....+.+|+.+++.+      +||||++
T Consensus         1 ~~f~~~~~LG~G~~g----~Vy~a~~~~-----~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~------~h~~iv~   65 (382)
T cd05625           1 SMFVKIKTLGIGAFG----EVCLARKVD-----TKALYAMKTLRKKDVLLRNQVAHVKAERDILAEA------DNEWVVR   65 (382)
T ss_pred             CCcEEEEEEEeCCCE----EEEEEEECC-----CCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhC------CCCcCCe
Confidence            369999999999999    999999988     79999999997532     234568899999999      4999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++.+.     +.+.+|+||| |+++|+|.+++.+.+         .++|                    ..++.++.||
T Consensus        66 ~~~~~~-----~~~~~~lv~E-~~~gg~L~~~l~~~~---------~~~e--------------------~~~~~~~~qi  110 (382)
T cd05625          66 LYYSFQ-----DKDNLYFVMD-YIPGGDMMSLLIRMG---------IFPE--------------------DLARFYIAEL  110 (382)
T ss_pred             EEEEEE-----eCCEEEEEEe-CCCCCcHHHHHHhcC---------CCCH--------------------HHHHHHHHHH
Confidence            999999     7789999999 999999999998654         3444                    4578899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeeccccccc-------------------------------------
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFY-------------------------------------  283 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~-------------------------------------  283 (667)
                      +.||+|||++||+||||||+|||++. ++.+||+|||+|..+.                                     
T Consensus       111 ~~al~~lH~~~ivHrDlKp~NILl~~-~g~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (382)
T cd05625         111 TCAVESVHKMGFIHRDIKPDNILIDR-DGHIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRL  189 (382)
T ss_pred             HHHHHHHHhCCeecCCCCHHHEEECC-CCCEEEeECCCCccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999998 8999999999975321                                     


Q ss_pred             -------------------CCCCCCCCcccccCCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHH
Q 005958          284 -------------------EDGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCL  344 (667)
Q Consensus       284 -------------------~~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l  344 (667)
                                         .+.+.|+|||++. ...|+.++|||||||++|||++|++||..            ..+...
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~-~~~~~~~~DiwSlGvil~elltG~~Pf~~------------~~~~~~  256 (382)
T cd05625         190 KPLERRAARQHQRCLAHSLVGTPNYIAPEVLL-RTGYTQLCDWWSVGVILYEMLVGQPPFLA------------QTPLET  256 (382)
T ss_pred             cchhhhhccccccccccccccCcccCCHHHhc-CCCCCCeeeEEechHHHHHHHhCCCCCCC------------CCHHHH
Confidence                               1236799999654 45689999999999999999999999952            222111


Q ss_pred             HHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC---HHHHHcCCCCCCCCCC
Q 005958          345 REFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS---CLDALRHPFLCGPRWR  406 (667)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS---a~elL~HPwf~~~~~~  406 (667)
                      ..   .+....   .....+....+++++++||.+|+ .||++|++   ++++++||||++..|.
T Consensus       257 ~~---~i~~~~---~~~~~p~~~~~s~~~~~li~~l~-~~p~~R~~~~~~~ei~~hp~f~~~~~~  314 (382)
T cd05625         257 QM---KVINWQ---TSLHIPPQAKLSPEASDLIIKLC-RGPEDRLGKNGADEIKAHPFFKTIDFS  314 (382)
T ss_pred             HH---HHHccC---CCcCCCCcccCCHHHHHHHHHHc-cCHhHcCCCCCHHHHhcCCCcCCcChH
Confidence            11   111100   01122333567899999999987 59999997   9999999999987753

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=1e-41  Score=371.94  Aligned_cols=251  Identities=18%  Similarity=0.239  Sum_probs=200.1

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ..|++++.||+|+||    +||+|++..     +++.||||++....     ....+.+|+.+++.++      ||||++
T Consensus         1 ~~f~~~~~LG~G~~g----~Vy~~~~~~-----~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~------h~~iv~   65 (381)
T cd05626           1 SMFVKIKTLGIGAFG----EVCLACKVD-----THALYAMKTLRKKDVLNRNQVAHVKAERDILAEAD------NEWVVK   65 (381)
T ss_pred             CCceEEEEEeecCCE----EEEEEEECC-----CCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcC------CCCeee
Confidence            369999999999999    999999988     89999999997532     2245688999999994      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     +.+.+|+||| |+++|+|.+++.+.+         .++|                    ..++.++.||
T Consensus        66 l~~~~~-----~~~~~~lv~E-~~~gg~L~~~l~~~~---------~~~e--------------------~~~~~~~~qi  110 (381)
T cd05626          66 LYYSFQ-----DKDNLYFVMD-YIPGGDMMSLLIRME---------VFPE--------------------VLARFYIAEL  110 (381)
T ss_pred             eEEEEe-----cCCEEEEEEe-cCCCCcHHHHHHhcC---------CCCH--------------------HHHHHHHHHH
Confidence            999999     7789999999 999999999998754         3444                    4567899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeeccccccc-------------------------------------
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFY-------------------------------------  283 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~-------------------------------------  283 (667)
                      +.||+|||++||+||||||+|||++. ++++||+|||++..+.                                     
T Consensus       111 ~~aL~~LH~~givHrDlKp~Nili~~-~~~~kL~DFGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (381)
T cd05626         111 TLAIESVHKMGFIHRDIKPDNILIDL-DGHIKLTDFGLCTGFRWTHNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRL  189 (381)
T ss_pred             HHHHHHHHhCCeeecCCcHHHEEECC-CCCEEEeeCcCCcccccccccccccccccccccccCccccccccccccccccc
Confidence            99999999999999999999999998 8999999999975321                                     


Q ss_pred             -------------------CCCCCCCCcccccCCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHH
Q 005958          284 -------------------EDGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCL  344 (667)
Q Consensus       284 -------------------~~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l  344 (667)
                                         .+.+.|+|||++. ...|+.++|||||||++|||++|.+||...            .+...
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~-~~~~~~~~DiwSlG~il~elltG~~Pf~~~------------~~~~~  256 (381)
T cd05626         190 KTLEQRATKQHQRCLAHSLVGTPNYIAPEVLL-RKGYTQLCDWWSVGVILFEMLVGQPPFLAP------------TPTET  256 (381)
T ss_pred             chhhccccccccccccccccCCccccCHHHHc-CCCCCCccceeehhhHHHHHHhCCCCCcCC------------CHHHH
Confidence                               1346799999654 456899999999999999999999999521            11111


Q ss_pred             HHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhc--CcCCCCCHHHHHcCCCCCCCCCC
Q 005958          345 REFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLAT--KPSKRISCLDALRHPFLCGPRWR  406 (667)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~--DP~kRpSa~elL~HPwf~~~~~~  406 (667)
                      ...   +....   .....+....+++++++||.+||..  +|..|++++++++||||++..|.
T Consensus       257 ~~~---i~~~~---~~~~~~~~~~~s~~~~dli~~ll~~~~~~~~R~~~~~~l~hp~f~~~~~~  314 (381)
T cd05626         257 QLK---VINWE---NTLHIPPQVKLSPEAVDLITKLCCSAEERLGRNGADDIKAHPFFSEVDFS  314 (381)
T ss_pred             HHH---HHccc---cccCCCCCCCCCHHHHHHHHHHccCcccccCCCCHHHHhcCcccCCCChh
Confidence            111   11100   0111233345789999999996654  55559999999999999987753

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1e-41  Score=373.64  Aligned_cols=267  Identities=18%  Similarity=0.165  Sum_probs=202.6

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      +...+|++++.||+|+||    .||+|.+..     +++.||+|....    ....+|+++|++++      ||||++++
T Consensus        89 ~~~~~y~~~~~lg~G~~g----~V~~~~d~~-----~~~~vaiK~~~~----~~~~~E~~il~~l~------HpnIv~~~  149 (391)
T PHA03212         89 IEKAGFSILETFTPGAEG----FAFACIDNK-----TCEHVVIKAGQR----GGTATEAHILRAIN------HPSIIQLK  149 (391)
T ss_pred             cccCCcEEEEEEcCCCCe----EEEEEEECC-----CCCEEEEechhh----hhhHHHHHHHHhCC------CCCCCCEe
Confidence            445789999999999999    999999998     899999997532    34678999999995      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     .....++||| ++.+ +|.+++....         .+++                    ..++.++.||+.
T Consensus       150 ~~~~-----~~~~~~lv~e-~~~~-~L~~~l~~~~---------~l~~--------------------~~~~~i~~qi~~  193 (391)
T PHA03212        150 GTFT-----YNKFTCLILP-RYKT-DLYCYLAAKR---------NIAI--------------------CDILAIERSVLR  193 (391)
T ss_pred             EEEE-----ECCeeEEEEe-cCCC-CHHHHHHhcC---------CCCH--------------------HHHHHHHHHHHH
Confidence            9998     7788999999 8875 9999987643         3443                    457889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeeccccccc----------CCCCCCCCcccccCCCCCCchhhHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFY----------EDGPNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~----------~~~~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      ||.|||++||+||||||+|||++. ++.+||+|||+|+...          .+.+.|+|||++. ...|+.++|||||||
T Consensus       194 aL~ylH~~~IvHrDiKP~NIll~~-~~~vkL~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwSlGv  271 (391)
T PHA03212        194 AIQYLHENRIIHRDIKAENIFINH-PGDVCLGDFGAACFPVDINANKYYGWAGTIATNAPELLA-RDPYGPAVDIWSAGI  271 (391)
T ss_pred             HHHHHHhCCcccCCCChHhEEEcC-CCCEEEEeCCcccccccccccccccccCccCCCChhhhc-CCCCCcHHHHHHHHH
Confidence            999999999999999999999998 8999999999996432          1337899999654 456999999999999


Q ss_pred             HHHHHHhCCCCChhh----------hhhhhhhhccCCChhH--------HHHHHHHHhccCCCC--CCCCcccccCCCHH
Q 005958          313 MMAKMVLRELMDPLI----------FTKFKSFLTKGIDPSC--------LREFLLQVLNRNSSS--GNTGFQILDRNWGA  372 (667)
Q Consensus       313 iLyemltG~~PF~~~----------~~~~~~~~~~g~~~~~--------l~~~~~~~~~~~~~~--~~~~~~~~~~~s~e  372 (667)
                      ++|||++|..||.+.          .++..+....|..+..        +..............  ...........+.+
T Consensus       272 il~elltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (391)
T PHA03212        272 VLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDAQANLDEIYIGLAKKSSRKPGSRPLWTNLYELPID  351 (391)
T ss_pred             HHHHHHHCCCCcCCcccccccCchhHHHHHHHHHhcCChhhcCcchhHHHHHHHHHHHhccCCCCCCCCCHHHHhhhhhh
Confidence            999999999776421          1122222223322211        111111111111110  01111112235678


Q ss_pred             HHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCCCC
Q 005958          373 GWNLLSLLLATKPSKRISCLDALRHPFLCGPRWR  406 (667)
Q Consensus       373 ~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~~~  406 (667)
                      +.+||.+||++||++||||+|+|+||||+....+
T Consensus       352 l~~Li~~mL~~dP~~Rpta~elL~hp~f~~~~~~  385 (391)
T PHA03212        352 LEYLICKMLAFDAHHRPSAEALLDFAAFQDIPDP  385 (391)
T ss_pred             HHHHHHHHhcCChhhCCCHHHHhcChhhccCCCC
Confidence            9999999999999999999999999999986643

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=2.6e-41  Score=360.27  Aligned_cols=247  Identities=21%  Similarity=0.260  Sum_probs=201.6

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      +|++++.||+|+||    .||+|.+..     +++.||||++.+..     ..+....|+.++..+.     .|++|+++
T Consensus         1 ~y~~~~~lg~G~~g----~Vy~~~~~~-----~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~-----~~~~i~~~   66 (324)
T cd05587           1 DFNFLMVLGKGSFG----KVMLAERKG-----TDELYAIKILKKDVIIQDDDVECTMVEKRVLALPG-----KPPFLTQL   66 (324)
T ss_pred             CceEEEEEeeccCe----EEEEEEECC-----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcC-----CCCceeee
Confidence            58999999999999    999999987     78999999997532     2345678999999886     45678999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     ..+.+|+||| |+++|+|.+++....         .+++                    ..++.++.||+
T Consensus        67 ~~~~~-----~~~~~~lv~E-~~~~g~L~~~~~~~~---------~~~~--------------------~~~~~~~~qi~  111 (324)
T cd05587          67 HSCFQ-----TMDRLYFVME-YVNGGDLMYHIQQVG---------KFKE--------------------PHAVFYAAEIA  111 (324)
T ss_pred             EEEEE-----cCCEEEEEEc-CCCCCcHHHHHHHcC---------CCCH--------------------HHHHHHHHHHH
Confidence            99998     7789999999 999999999998654         4554                    34677999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeeccccccc---------CCCCCCCCcccccCCCCCCchhhHHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFY---------EDGPNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~---------~~~~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      .||.|||++||+||||||+|||++. ++.+||+|||++....         .+.+.|+|||++. ...++.++||||+||
T Consensus       112 ~al~~lH~~~ivH~dlkp~Nill~~-~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwslGv  189 (324)
T cd05587         112 IGLFFLHSKGIIYRDLKLDNVMLDA-EGHIKIADFGMCKENIFGGKTTRTFCGTPDYIAPEIIA-YQPYGKSVDWWAFGV  189 (324)
T ss_pred             HHHHHHHHCCeEecCCCHHHeEEcC-CCCEEEeecCcceecCCCCCceeeecCCccccChhhhc-CCCCCcccchhhhHH
Confidence            9999999999999999999999998 8999999999987432         1347899999654 456899999999999


Q ss_pred             HHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH-
Q 005958          313 MMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC-  391 (667)
Q Consensus       313 iLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa-  391 (667)
                      ++|||++|++||.            +.+.......   +...       ....+..+++++++||.+||..||++|+++ 
T Consensus       190 il~elltG~~pf~------------~~~~~~~~~~---i~~~-------~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~  247 (324)
T cd05587         190 LLYEMLAGQPPFD------------GEDEDELFQS---IMEH-------NVSYPKSLSKEAVSICKGLLTKHPAKRLGCG  247 (324)
T ss_pred             HHHHHHhCCCCCC------------CCCHHHHHHH---HHcC-------CCCCCCCCCHHHHHHHHHHhhcCHHHcCCCC
Confidence            9999999999985            2222222222   2111       112334678899999999999999999986 


Q ss_pred             ----HHHHcCCCCCCCCCC
Q 005958          392 ----LDALRHPFLCGPRWR  406 (667)
Q Consensus       392 ----~elL~HPwf~~~~~~  406 (667)
                          +++++||||...+|.
T Consensus       248 ~~~~~~~~~hp~~~~~~~~  266 (324)
T cd05587         248 PTGERDIREHAFFRRIDWE  266 (324)
T ss_pred             CCCHHHHhcCCCcCCCCHH
Confidence                899999999998753

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=100.00  E-value=2.8e-43  Score=354.75  Aligned_cols=284  Identities=20%  Similarity=0.255  Sum_probs=225.4

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      +..|++++.||+|+||    .||+|..+.+.+. ..+.||||+++..    .......||+.+++.|+      ||||+.
T Consensus        23 l~~ye~ig~Ig~GTYG----~VykA~~~~~n~k-r~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~------h~nvi~   91 (438)
T KOG0666|consen   23 LFEYEGIGKIGRGTYG----KVYKAVRKNTNDK-RTKEYAIKKFKGEKDGTGISMSACREIALLRELK------HPNVIS   91 (438)
T ss_pred             HHHhhccceecccccc----eeeEeeeccCCcc-cchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhc------CCcchh
Confidence            5789999999999999    9999977664321 1458999999865    34456799999999996      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +..+|.    ..+..+++++| |.+. ||.++|+-+....                        ...++...++.|+.||
T Consensus        92 Lv~Vfl----~~d~~v~l~fd-YAEh-DL~~II~fHr~~~------------------------~~~lp~~mvKsilwQi  141 (438)
T KOG0666|consen   92 LVKVFL----SHDKKVWLLFD-YAEH-DLWHIIKFHRASK------------------------AKQLPRSMVKSILWQI  141 (438)
T ss_pred             HHHHHh----ccCceEEEEeh-hhhh-hHHHHHHHhccch------------------------hccCCHHHHHHHHHHH
Confidence            999998    13789999999 9999 9999998764111                        0134557899999999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCC----CeEEEeeecccccccCCC------------CCCCCcccccCCCCCCch
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVD----RHIKVGILGNAADFYEDG------------PNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~----~~vKL~DFGlA~~~~~~~------------~~Y~APE~l~~~~~ys~k  304 (667)
                      +.|+.|||++-|+||||||.|||+.. +    |.+||+|||+|+.+...-            .-|+|||++++...|+.+
T Consensus       142 l~Gv~YLH~NWvlHRDLKPaNIlvmg-dgperG~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~A  220 (438)
T KOG0666|consen  142 LDGVHYLHSNWVLHRDLKPANILVMG-DGPERGRVKIADLGLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKA  220 (438)
T ss_pred             HhhhHHHhhhheeeccCCcceEEEec-cCCccCeeEeecccHHHHhhccccccccCCceEEEEEecChHHhcccccccch
Confidence            99999999999999999999999987 5    899999999999876553            358999999999999999


Q ss_pred             hhHHHHHHHHHHHHhCCCCChh------------hhhhhhhhhccCCChhHHHHHHHHH------hccCC--CCCCCCc-
Q 005958          305 FDMRCVGFMMAKMVLRELMDPL------------IFTKFKSFLTKGIDPSCLREFLLQV------LNRNS--SSGNTGF-  363 (667)
Q Consensus       305 sDIWSLGviLyemltG~~PF~~------------~~~~~~~~~~~g~~~~~l~~~~~~~------~~~~~--~~~~~~~-  363 (667)
                      +||||+|||+.||++-+|.|.+            .+|+.++|...|.+.......+.+.      +....  ...+..+ 
T Consensus       221 iDvWAiGCIfaElLtl~PlF~g~E~k~~~~~Pfq~dQl~rIf~vLG~Pt~~~Wp~lkk~Pe~q~~ls~f~~~~~~n~sL~  300 (438)
T KOG0666|consen  221 IDVWAIGCIFAELLTLEPLFKGREEKIKTKNPFQHDQLDRIFEVLGTPTDKDWPDLKKMPEYQTLLSDFRRHYYDNVSLH  300 (438)
T ss_pred             hhhHHHHHHHHHHHccCccccchhhhcccCCCchHHHHHHHHHHcCCCccccchhhhhCcchHHHHHHhHHhhcCcchHH
Confidence            9999999999999999999972            5678889999998865433322211      00000  0001001 


Q ss_pred             ---ccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCCCCCCCc
Q 005958          364 ---QILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPRWRVDPS  410 (667)
Q Consensus       364 ---~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~~~~~~~  410 (667)
                         .....-++.+.+|+.+||++||.+|+||+++|+|+||...+.+..|.
T Consensus       301 ~~~~~~k~k~~~a~~LL~klL~yDP~kRIta~qAleh~yF~~d~lpp~pt  350 (438)
T KOG0666|consen  301 KYYHKHKVKDPSALDLLQKLLTYDPIKRITAEQALEHPYFTEDPLPPLPT  350 (438)
T ss_pred             HHHHHhcCCCchHHHHHHHHhccCchhhccHHHHhcccccccCCCCCCcc
Confidence               12233456799999999999999999999999999999987554444

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-43  Score=372.41  Aligned_cols=245  Identities=20%  Similarity=0.240  Sum_probs=209.2

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh---HHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA---QRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~---~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ..|...+.||+|+||    .||+|.+..     +++.||||++.....   .++++.|+.+|..++      ++||.++|
T Consensus        13 ~~~~~~~~IgrGsfG----~Vyk~~d~~-----t~k~vAiKii~Le~~~deIediqqei~~Ls~~~------~~~it~yy   77 (467)
T KOG0201|consen   13 LLYTKLELIGRGSFG----EVYKAIDNK-----TKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCD------SPNITEYY   77 (467)
T ss_pred             cccccchhccccccc----eeeeeeecc-----ccceEEEEEechhhcchhhHHHHHHHHHHHhcC------cchHHhhh
Confidence            457888999999999    999999998     899999999987543   356789999999995      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +.|.     .+..+|++|| ||+||++.+.++...         .++|                    ..|..++++++.
T Consensus        78 gsyl-----~g~~LwiiMe-y~~gGsv~~lL~~~~---------~~~E--------------------~~i~~ilre~l~  122 (467)
T KOG0201|consen   78 GSYL-----KGTKLWIIME-YCGGGSVLDLLKSGN---------ILDE--------------------FEIAVILREVLK  122 (467)
T ss_pred             hhee-----ecccHHHHHH-HhcCcchhhhhccCC---------CCcc--------------------ceeeeehHHHHH
Confidence            9999     8899999999 999999999998754         3344                    346779999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      ||.|||.++.+|||||+.|||+.. +|.+||+|||.+......         .|+|||||++. ...|+.++||||||++
T Consensus       123 ~l~ylH~~~kiHrDIKaanil~s~-~g~vkl~DfgVa~ql~~~~~rr~tfvGTPfwMAPEVI~-~~~Y~~KADIWSLGIT  200 (467)
T KOG0201|consen  123 GLDYLHSEKKIHRDIKAANILLSE-SGDVKLADFGVAGQLTNTVKRRKTFVGTPFWMAPEVIK-QSGYDTKADIWSLGIT  200 (467)
T ss_pred             HhhhhhhcceecccccccceeEec-cCcEEEEecceeeeeechhhccccccccccccchhhhc-cccccchhhhhhhhHH
Confidence            999999999999999999999999 799999999999876543         38999999776 6679999999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      .|||++|.||+....++-..|...-..|               |      .....+|+.+++||..||++||+.||+|.+
T Consensus       201 aiEla~GePP~s~~hPmrvlflIpk~~P---------------P------~L~~~~S~~~kEFV~~CL~k~P~~RpsA~~  259 (467)
T KOG0201|consen  201 AIELAKGEPPHSKLHPMRVLFLIPKSAP---------------P------RLDGDFSPPFKEFVEACLDKNPEFRPSAKE  259 (467)
T ss_pred             HHHHhcCCCCCcccCcceEEEeccCCCC---------------C------ccccccCHHHHHHHHHHhhcCcccCcCHHH
Confidence            9999999999986665443333222211               1      112267889999999999999999999999


Q ss_pred             HHcCCCCCCC
Q 005958          394 ALRHPFLCGP  403 (667)
Q Consensus       394 lL~HPwf~~~  403 (667)
                      +|+|+|++..
T Consensus       260 LLKh~FIk~a  269 (467)
T KOG0201|consen  260 LLKHKFIKRA  269 (467)
T ss_pred             HhhhHHHHhc
Confidence            9999999883

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=100.00  E-value=1.7e-41  Score=368.77  Aligned_cols=273  Identities=21%  Similarity=0.252  Sum_probs=209.5

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      +|++++.||+|+||    .||+|.+..     +++.||||++...    ...+.+.+|+++++.++      ||||++++
T Consensus         1 ~~~~~~~lg~G~~g----~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~------h~niv~~~   65 (372)
T cd07853           1 DVEPDRPIGYGAFG----VVWSVTDPR-----DGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFK------HDNVLSAL   65 (372)
T ss_pred             CCcccceeeeCCCE----EEEEEEECC-----CCCEEEEEeccccccchHHHHHHHHHHHHHHhCC------CCCcCCHh
Confidence            58899999999999    999999987     7999999998642    22356789999999995      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++..........+|+||| |+++ +|.+++....         .+++                    ..++.++.||+.
T Consensus        66 ~~~~~~~~~~~~~~~lv~e-~~~~-~l~~~~~~~~---------~l~~--------------------~~~~~~~~qi~~  114 (372)
T cd07853          66 DILQPPHIDPFEEIYVVTE-LMQS-DLHKIIVSPQ---------PLSS--------------------DHVKVFLYQILR  114 (372)
T ss_pred             heecCCCccccceEEEEee-cccc-CHHHHHhcCC---------CCCH--------------------HHHHHHHHHHHH
Confidence            9998332112237999999 9886 9999887643         4444                    457889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC----------CCCCCCcccccCCCCCCchhhHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED----------GPNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~----------~~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      ||.|||++||+||||||+|||++. ++.+||+|||+|......          .+.|+|||.+.+...|+.++||||+||
T Consensus       115 aL~~LH~~~ivH~dlkp~Nili~~-~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~  193 (372)
T cd07853         115 GLKYLHSAGILHRDIKPGNLLVNS-NCVLKICDFGLARVEEPDESKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGC  193 (372)
T ss_pred             HHHHHHhCCeeCCCCChHHEEECC-CCCEEeccccceeecccCccccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHH
Confidence            999999999999999999999998 899999999999754321          357999998777677899999999999


Q ss_pred             HHHHHHhCCCCChhh---hhhhhhhhccCCChhHHHHHH----HH-HhccC--CCCCCCCcccccCCCHHHHHHHHHhhh
Q 005958          313 MMAKMVLRELMDPLI---FTKFKSFLTKGIDPSCLREFL----LQ-VLNRN--SSSGNTGFQILDRNWGAGWNLLSLLLA  382 (667)
Q Consensus       313 iLyemltG~~PF~~~---~~~~~~~~~~g~~~~~l~~~~----~~-~~~~~--~~~~~~~~~~~~~~s~e~~dLI~~~L~  382 (667)
                      ++|||++|++||...   .+...+....|.++.......    .. .....  .+.....+......++++++||.+||+
T Consensus       194 il~el~~g~~pf~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~  273 (372)
T cd07853         194 IFAELLGRRILFQAQSPIQQLDLITDLLGTPSLEAMRSACEGARAHILRGPHKPPSLPVLYTLSSQATHEAVHLLCRMLV  273 (372)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhHHHHHHHHhCCCCCCchHHhcccCCCCCHHHHHHHHHhCC
Confidence            999999999999742   233333444555443211111    11 11111  111111112334568899999999999


Q ss_pred             cCcCCCCCHHHHHcCCCCCCCCCC
Q 005958          383 TKPSKRISCLDALRHPFLCGPRWR  406 (667)
Q Consensus       383 ~DP~kRpSa~elL~HPwf~~~~~~  406 (667)
                      +||++|||+.|+|+||||.+..+.
T Consensus       274 ~dP~~R~t~~e~l~hp~~~~~~~~  297 (372)
T cd07853         274 FDPDKRISAADALAHPYLDEGRLR  297 (372)
T ss_pred             CChhhCcCHHHHhcCHhhCCCcch
Confidence            999999999999999999987643

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=2.1e-41  Score=360.68  Aligned_cols=242  Identities=18%  Similarity=0.226  Sum_probs=197.8

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEE
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVS  166 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~  166 (667)
                      +.||+|+||    +||+|.++.     +++.||||++.+..     ..+...+|+.++..+.     +||||+++++++.
T Consensus         1 ~~lg~G~~g----~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~-----~h~~iv~~~~~~~   66 (320)
T cd05590           1 RVLGKGSFG----KVMLARLKE-----SGRLYAVKVLKKDVILQDDDVECTMTEKRILSLAR-----NHPFLTQLYCCFQ   66 (320)
T ss_pred             CeeeeCCCe----EEEEEEEcC-----CCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcc-----CCCchhceeeEEE
Confidence            479999999    999999987     78999999997532     2234577888888775     6999999999998


Q ss_pred             ecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHH
Q 005958          167 SHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNY  246 (667)
Q Consensus       167 ~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~y  246 (667)
                           ..+.+|+||| |+++|+|.+++....         .+++                    ..++.++.||+.||.|
T Consensus        67 -----~~~~~~iv~E-y~~~g~L~~~i~~~~---------~l~~--------------------~~~~~~~~ql~~~L~~  111 (320)
T cd05590          67 -----TPDRLFFVME-FVNGGDLMFHIQKSR---------RFDE--------------------ARARFYAAEITSALMF  111 (320)
T ss_pred             -----cCCEEEEEEc-CCCCchHHHHHHHcC---------CCCH--------------------HHHHHHHHHHHHHHHH
Confidence                 7789999999 999999999998754         4555                    3467799999999999


Q ss_pred             HHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHHHHHHH
Q 005958          247 LHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKM  317 (667)
Q Consensus       247 LHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyem  317 (667)
                      ||++||+||||||+|||++. ++.+||+|||++.....         +.+.|+|||++ ....++.++|||||||++|||
T Consensus       112 lH~~~ivH~dlkp~NIli~~-~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DiwslG~il~el  189 (320)
T cd05590         112 LHDKGIIYRDLKLDNVLLDH-EGHCKLADFGMCKEGIFNGKTTSTFCGTPDYIAPEIL-QEMLYGPSVDWWAMGVLLYEM  189 (320)
T ss_pred             HHHCCeEeCCCCHHHeEECC-CCcEEEeeCCCCeecCcCCCcccccccCccccCHHHH-cCCCCCCccchhhhHHHHHHH
Confidence            99999999999999999998 89999999999875321         23689999955 455689999999999999999


Q ss_pred             HhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH------
Q 005958          318 VLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC------  391 (667)
Q Consensus       318 ltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa------  391 (667)
                      ++|++||..            .....+.+.   +....       ......+++++++||.+||+.||++||++      
T Consensus       190 ~~g~~Pf~~------------~~~~~~~~~---i~~~~-------~~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~  247 (320)
T cd05590         190 LCGHAPFEA------------ENEDDLFEA---ILNDE-------VVYPTWLSQDAVDILKAFMTKNPTMRLGSLTLGGE  247 (320)
T ss_pred             hhCCCCCCC------------CCHHHHHHH---HhcCC-------CCCCCCCCHHHHHHHHHHcccCHHHCCCCCCCCCH
Confidence            999999852            222222222   22111       12234578899999999999999999998      


Q ss_pred             HHHHcCCCCCCCCCC
Q 005958          392 LDALRHPFLCGPRWR  406 (667)
Q Consensus       392 ~elL~HPwf~~~~~~  406 (667)
                      +++++||||....|.
T Consensus       248 ~~~~~h~~f~~~~~~  262 (320)
T cd05590         248 EAILRHPFFKELDWE  262 (320)
T ss_pred             HHHHcCCCcCCCCHH
Confidence            999999999987753

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=100.00  E-value=7e-43  Score=350.57  Aligned_cols=258  Identities=20%  Similarity=0.271  Sum_probs=209.9

Q ss_pred             cCCeEEE-eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           85 MGDFKIL-DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        85 ~~~y~i~-~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      .++|.+. ++||-|-.|    .|..|.++.     |++++|+|++.   +....+||+++.-...     .|||||.+++
T Consensus        60 tedY~is~qvLG~GinG----kV~~C~~k~-----T~ekfALKvL~---Ds~KARrEVeLHw~~s-----~h~~iV~Iid  122 (400)
T KOG0604|consen   60 TEDYSISWQVLGAGING----KVVQCVHKR-----TQEKFALKVLL---DSPKARREVELHWMAS-----GHPHIVSIID  122 (400)
T ss_pred             hhhheehhhhhccccCC----ceEEEEecc-----chhhhHHHHHh---cCHHHHhHhhhhhhhc-----CCCceEEeeh
Confidence            4778776 678999999    999999998     89999999984   3355788999988887     7999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      +|+.. ..+...+.|||| +++||+|++.|+.++       ...|+|++|                    ..|++||..|
T Consensus       123 VyeNs-~~~rkcLLiVmE-~meGGeLfsriq~~g-------~~afTErea--------------------~eI~~qI~~A  173 (400)
T KOG0604|consen  123 VYENS-YQGRKCLLIVME-CMEGGELFSRIQDRG-------DQAFTEREA--------------------SEIMKQIGLA  173 (400)
T ss_pred             hhhhh-ccCceeeEeeee-cccchHHHHHHHHcc-------cccchHHHH--------------------HHHHHHHHHH
Confidence            99743 235678999999 999999999999876       346888765                    5699999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcC--CCCeEEEeeecccccccCCC--------CCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISP--VDRHIKVGILGNAADFYEDG--------PNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~--~~~~vKL~DFGlA~~~~~~~--------~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      +.|||+.+|.||||||||+|...  .+..+||+|||+|+.-....        |+|.||| +++...|+..+|+||+||+
T Consensus       174 v~~lH~~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~~~~~L~TPc~TPyYvaPe-vlg~eKydkscdmwSlgVi  252 (400)
T KOG0604|consen  174 VRYLHSMNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQEPGDLMTPCFTPYYVAPE-VLGPEKYDKSCDMWSLGVI  252 (400)
T ss_pred             HHHHHhcchhhccCChhheeeecCCCCcceEecccccccccCCCccccCCcccccccCHH-HhCchhcCCCCCccchhHH
Confidence            99999999999999999999975  35679999999998766332        8999999 5666779999999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCCh-hHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHH
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDP-SCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCL  392 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~  392 (667)
                      +|.|++|.|||....         |..- ..+...+.   .....   ..-+.|..+|++++|+|+.+|..+|.+|+|++
T Consensus       253 mYIlLCGyPPFYS~h---------g~aispgMk~rI~---~gqy~---FP~pEWs~VSe~aKdlIR~LLkt~PteRlTI~  317 (400)
T KOG0604|consen  253 MYILLCGYPPFYSNH---------GLAISPGMKRRIR---TGQYE---FPEPEWSCVSEAAKDLIRKLLKTEPTERLTIE  317 (400)
T ss_pred             HHHhhcCCCcccccC---------CccCChhHHhHhh---ccCcc---CCChhHhHHHHHHHHHHHHHhcCCchhheeHH
Confidence            999999999995322         2111 11222221   11111   11235677899999999999999999999999


Q ss_pred             HHHcCCCCCCCC
Q 005958          393 DALRHPFLCGPR  404 (667)
Q Consensus       393 elL~HPwf~~~~  404 (667)
                      ++++|||+.+..
T Consensus       318 ~~m~hpwi~~~~  329 (400)
T KOG0604|consen  318 EVMDHPWINQYE  329 (400)
T ss_pred             HhhcCchhcccc
Confidence            999999999865

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.1e-41  Score=359.02  Aligned_cols=237  Identities=18%  Similarity=0.217  Sum_probs=195.0

Q ss_pred             eccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEec
Q 005958           94 VSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSH  168 (667)
Q Consensus        94 LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~  168 (667)
                      ||+|+||    .||+|++..     +++.||+|++....     ......+|+.+++++      +||||+++++++.  
T Consensus         1 lg~G~~g----~Vy~~~~~~-----~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~--   63 (312)
T cd05585           1 IGKGSFG----KVMQVRKRD-----TQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQV------NCPFIVPLKFSFQ--   63 (312)
T ss_pred             CCcCCCe----EEEEEEECC-----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhC------CCCcEeceeeEEe--
Confidence            7999999    999999987     78999999997532     224457899999999      4999999999998  


Q ss_pred             ccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 005958          169 TTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLH  248 (667)
Q Consensus       169 ~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLH  248 (667)
                         ..+.+|+||| |+++|+|.+++...+         .+++                    ..++.++.||+.||.|||
T Consensus        64 ---~~~~~~lv~e-~~~~g~L~~~l~~~~---------~~~~--------------------~~~~~~~~qi~~~l~~lH  110 (312)
T cd05585          64 ---SPEKLYLVLA-FINGGELFHHLQREG---------RFDL--------------------SRARFYTAELLCALENLH  110 (312)
T ss_pred             ---cCCeEEEEEc-CCCCCcHHHHHHhcC---------CCCH--------------------HHHHHHHHHHHHHHHHHH
Confidence               7789999999 999999999998754         4554                    356779999999999999


Q ss_pred             HCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHHHHHHHHh
Q 005958          249 SHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVL  319 (667)
Q Consensus       249 s~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemlt  319 (667)
                      ++||+||||||+|||++. ++.+||+|||+++....         +.+.|+|||++. ...|+.++||||+||++|||++
T Consensus       111 ~~~i~HrDlkp~Nili~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DvwslGvil~el~t  188 (312)
T cd05585         111 KFNVIYRDLKPENILLDY-QGHIALCDFGLCKLNMKDDDKTNTFCGTPEYLAPELLL-GHGYTKAVDWWTLGVLLYEMLT  188 (312)
T ss_pred             hCCeEeCCCCHHHeEECC-CCcEEEEECcccccCccCCCccccccCCcccCCHHHHc-CCCCCCccceechhHHHHHHHh
Confidence            999999999999999998 89999999999875321         236899999654 4568999999999999999999


Q ss_pred             CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC---CHHHHHc
Q 005958          320 RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI---SCLDALR  396 (667)
Q Consensus       320 G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp---Sa~elL~  396 (667)
                      |++||..            ....   +....+...       .......+++++++||.+||+.||++||   ++.++|+
T Consensus       189 g~~pf~~------------~~~~---~~~~~~~~~-------~~~~~~~~~~~~~~li~~~L~~dp~~R~~~~~~~e~l~  246 (312)
T cd05585         189 GLPPFYD------------ENVN---EMYRKILQE-------PLRFPDGFDRDAKDLLIGLLSRDPTRRLGYNGAQEIKN  246 (312)
T ss_pred             CCCCcCC------------CCHH---HHHHHHHcC-------CCCCCCcCCHHHHHHHHHHcCCCHHHcCCCCCHHHHHc
Confidence            9999852            1121   122222222       1233456789999999999999999997   5899999


Q ss_pred             CCCCCCCC
Q 005958          397 HPFLCGPR  404 (667)
Q Consensus       397 HPwf~~~~  404 (667)
                      ||||.+..
T Consensus       247 hp~~~~~~  254 (312)
T cd05585         247 HPFFSQLS  254 (312)
T ss_pred             CCCcCCCC
Confidence            99999865

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=2.5e-41  Score=361.44  Aligned_cols=241  Identities=22%  Similarity=0.272  Sum_probs=197.7

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEE
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVS  166 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~  166 (667)
                      +.||+|+||    .||+|.+..     +++.||+|++.+..     ......+|+.+++.+      .||||+++++++.
T Consensus         1 ~~lG~G~~g----~Vy~~~~~~-----~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~~~~~~~   65 (328)
T cd05593           1 KLLGKGTFG----KVILVREKA-----SGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNT------RHPFLTSLKYSFQ   65 (328)
T ss_pred             CeeeeCCCE----EEEEEEECC-----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhC------CCCCCcceEEEEE
Confidence            469999999    999999987     79999999997532     224557899999998      4999999999998


Q ss_pred             ecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHH
Q 005958          167 SHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNY  246 (667)
Q Consensus       167 ~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~y  246 (667)
                           ..+.+|+||| |+++|+|.+++...+         .+++                    ..++.++.||+.||+|
T Consensus        66 -----~~~~~~lv~E-y~~~g~L~~~l~~~~---------~l~~--------------------~~~~~~~~qi~~aL~~  110 (328)
T cd05593          66 -----TKDRLCFVME-YVNGGELFFHLSRER---------VFSE--------------------DRTRFYGAEIVSALDY  110 (328)
T ss_pred             -----cCCEEEEEEe-CCCCCCHHHHHHhcC---------CCCH--------------------HHHHHHHHHHHHHHHH
Confidence                 7889999999 999999999987654         4554                    4567799999999999


Q ss_pred             HHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHHHHHHH
Q 005958          247 LHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKM  317 (667)
Q Consensus       247 LHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyem  317 (667)
                      ||++||+||||||+|||++. ++.+||+|||+++....         +.+.|+|||++. ...++.++|||||||++|+|
T Consensus       111 LH~~~ivHrDikp~NIll~~-~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwslGvil~el  188 (328)
T cd05593         111 LHSGKIVYRDLKLENLMLDK-DGHIKITDFGLCKEGITDAATMKTFCGTPEYLAPEVLE-DNDYGRAVDWWGLGVVMYEM  188 (328)
T ss_pred             HHhCCeEecccCHHHeEECC-CCcEEEecCcCCccCCCcccccccccCCcCccChhhhc-CCCCCccCCccccchHHHHH
Confidence            99999999999999999998 89999999999875321         336899999654 45689999999999999999


Q ss_pred             HhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC-----CHH
Q 005958          318 VLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI-----SCL  392 (667)
Q Consensus       318 ltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp-----Sa~  392 (667)
                      ++|++||..            .......+.   +...       ....+..+++++.+||.+||+.||++|+     ++.
T Consensus       189 ltG~~Pf~~------------~~~~~~~~~---~~~~-------~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~  246 (328)
T cd05593         189 MCGRLPFYN------------QDHEKLFEL---ILME-------DIKFPRTLSADAKSLLSGLLIKDPNKRLGGGPDDAK  246 (328)
T ss_pred             hhCCCCCCC------------CCHHHHHHH---hccC-------CccCCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHH
Confidence            999999852            122222111   1111       1233456789999999999999999997     899


Q ss_pred             HHHcCCCCCCCCCC
Q 005958          393 DALRHPFLCGPRWR  406 (667)
Q Consensus       393 elL~HPwf~~~~~~  406 (667)
                      |+++||||.+..|.
T Consensus       247 ~il~h~~~~~~~~~  260 (328)
T cd05593         247 EIMRHSFFTGVNWQ  260 (328)
T ss_pred             HHhcCCCcCCCCHH
Confidence            99999999987753

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.4e-41  Score=364.95  Aligned_cols=250  Identities=18%  Similarity=0.274  Sum_probs=203.6

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ++|++.+.||+|+||    +||+|++..     +++.||||++....     ....+.+|++++..+.      ||||++
T Consensus         1 ~~y~~~~~lg~G~~g----~Vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~------~~~i~~   65 (350)
T cd05573           1 DDFEVIKVIGRGAFG----EVWLVRDKD-----TGQVYAMKVLRKSDMIKRNQIAHVRAERDILADAD------SPWIVK   65 (350)
T ss_pred             CCceEEEEEEeCCcE----EEEEEEECC-----CCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcC------CCCccc
Confidence            479999999999999    999999998     79999999997632     2345688999999994      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     +.+.+|+||| |+.+|+|.+++.+.+         .+++                    ..++.++.||
T Consensus        66 ~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~l~~--------------------~~~~~i~~qi  110 (350)
T cd05573          66 LYYSFQ-----DEEHLYLVME-YMPGGDLMNLLIRKD---------VFPE--------------------ETARFYIAEL  110 (350)
T ss_pred             hhhhee-----cCCeEEEEEc-CCCCCCHHHHHHHcC---------CCCH--------------------HHHHHHHHHH
Confidence            999998     7889999999 999999999998753         4454                    4577899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC------------------------------------
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE------------------------------------  284 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~------------------------------------  284 (667)
                      +.||+|||++||+||||||+|||++. ++.+||+|||++.....                                    
T Consensus       111 ~~aL~~LH~~giiH~Dlkp~NIll~~-~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (350)
T cd05573         111 VLALDSVHKLGFIHRDIKPDNILIDA-DGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANS  189 (350)
T ss_pred             HHHHHHHHHCCeeccCCCHHHeEECC-CCCEEeecCCCCccCcccCcccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999998 89999999999875432                                    


Q ss_pred             --CCCCCCCcccccCCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCC
Q 005958          285 --DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTG  362 (667)
Q Consensus       285 --~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~  362 (667)
                        +.+.|+|||++.+ ..++.++|||||||++|||++|++||...            .......   .+....   ....
T Consensus       190 ~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~ell~g~~Pf~~~------------~~~~~~~---~i~~~~---~~~~  250 (350)
T cd05573         190 TVGTPDYIAPEVLRG-TPYGLECDWWSLGVILYEMLYGFPPFYSD------------TLQETYN---KIINWK---ESLR  250 (350)
T ss_pred             cccCccccCHHHHcC-CCCCCceeeEecchhhhhhccCCCCCCCC------------CHHHHHH---HHhccC---Cccc
Confidence              2367999996554 47899999999999999999999998522            1111111   111100   0111


Q ss_pred             cccccCCCHHHHHHHHHhhhcCcCCCCC-HHHHHcCCCCCCCCCC
Q 005958          363 FQILDRNWGAGWNLLSLLLATKPSKRIS-CLDALRHPFLCGPRWR  406 (667)
Q Consensus       363 ~~~~~~~s~e~~dLI~~~L~~DP~kRpS-a~elL~HPwf~~~~~~  406 (667)
                      ++....+++++++||.+||. ||.+|++ ++++|+||||.+..|.
T Consensus       251 ~p~~~~~~~~~~~li~~ll~-dp~~R~~s~~~ll~hp~~~~~~~~  294 (350)
T cd05573         251 FPPDPPVSPEAIDLICRLLC-DPEDRLGSFEEIKSHPFFKGIDWE  294 (350)
T ss_pred             CCCCCCCCHHHHHHHHHHcc-ChhhcCCCHHHHhcCCCcCCCCHH
Confidence            22233468999999999998 9999999 9999999999998763

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=2.9e-41  Score=360.10  Aligned_cols=241  Identities=20%  Similarity=0.241  Sum_probs=197.3

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEE
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVS  166 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~  166 (667)
                      +.||+|+||    .||+|++..     +++.||+|++....     ......+|+.+++.++      ||||+++++++.
T Consensus         1 ~~lG~G~~g----~Vy~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~------hp~i~~~~~~~~   65 (323)
T cd05595           1 KLLGKGTFG----KVILVREKA-----TGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTR------HPFLTALKYAFQ   65 (323)
T ss_pred             CeeeeCCCE----EEEEEEECC-----CCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCC------CCCCcceeeEEe
Confidence            479999999    999999987     79999999997532     2234578999999994      999999999998


Q ss_pred             ecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHH
Q 005958          167 SHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNY  246 (667)
Q Consensus       167 ~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~y  246 (667)
                           ..+.+|+||| |+++|+|..++...+         .+++                    ..++.++.||+.||.|
T Consensus        66 -----~~~~~~lv~E-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~~~~~qi~~aL~~  110 (323)
T cd05595          66 -----THDRLCFVME-YANGGELFFHLSRER---------VFTE--------------------ERARFYGAEIVSALEY  110 (323)
T ss_pred             -----cCCEEEEEEe-CCCCCcHHHHHHHcC---------CCCH--------------------HHHHHHHHHHHHHHHH
Confidence                 7789999999 999999999987654         4554                    4577899999999999


Q ss_pred             HHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHHHHHHH
Q 005958          247 LHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKM  317 (667)
Q Consensus       247 LHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyem  317 (667)
                      ||++||+||||||+|||++. ++.+||+|||++.....         +.+.|+|||++. ...++.++|||||||++|||
T Consensus       111 LH~~~ivH~Dlkp~NIll~~-~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwSlGvil~el  188 (323)
T cd05595         111 LHSRDVVYRDIKLENLMLDK-DGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLE-DNDYGRAVDWWGLGVVMYEM  188 (323)
T ss_pred             HHHCCeEecCCCHHHEEEcC-CCCEEecccHHhccccCCCCccccccCCcCcCCccccc-CCCCCchhchhhhHHHHHHH
Confidence            99999999999999999998 89999999999875321         236899999654 45689999999999999999


Q ss_pred             HhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC-----CHH
Q 005958          318 VLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI-----SCL  392 (667)
Q Consensus       318 ltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp-----Sa~  392 (667)
                      ++|+.||..            .......+.   +...       ....+..+++++++||.+||+.||++|+     ++.
T Consensus       189 l~g~~Pf~~------------~~~~~~~~~---~~~~-------~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~  246 (323)
T cd05595         189 MCGRLPFYN------------QDHERLFEL---ILME-------EIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAK  246 (323)
T ss_pred             HhCCCCCCC------------CCHHHHHHH---HhcC-------CCCCCCCCCHHHHHHHHHHccCCHHHhCCCCCCCHH
Confidence            999999842            122221111   1111       1223356789999999999999999998     899


Q ss_pred             HHHcCCCCCCCCCC
Q 005958          393 DALRHPFLCGPRWR  406 (667)
Q Consensus       393 elL~HPwf~~~~~~  406 (667)
                      ++++||||.+..|.
T Consensus       247 ~~l~h~~~~~~~~~  260 (323)
T cd05595         247 EVMEHRFFLSINWQ  260 (323)
T ss_pred             HHHcCCCcCCCCHH
Confidence            99999999987753

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=4.1e-41  Score=358.59  Aligned_cols=247  Identities=20%  Similarity=0.250  Sum_probs=202.3

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      +|++.+.||+|+||    .||+|++..     +++.||||++.+..     ..+....|..++..+.     .|++|+++
T Consensus         1 df~~~~~lg~G~~g----~Vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~-----~~~~i~~~   66 (323)
T cd05616           1 DFNFLMVLGKGSFG----KVMLAERKG-----TDELYAIKILKKDVVIQDDDVECTMVEKRVLALSG-----KPPFLTQL   66 (323)
T ss_pred             CceEEEEEeeCCCe----EEEEEEECC-----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcc-----CCCeEeeE
Confidence            58999999999999    999999987     78999999997632     1233567888888775     69999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     ..+.+|+||| |+++|+|.+++...+         .+++                    ..+..++.||+
T Consensus        67 ~~~~~-----~~~~~~lv~E-~~~~g~L~~~~~~~~---------~~~~--------------------~~~~~~~~qi~  111 (323)
T cd05616          67 HSCFQ-----TMDRLYFVME-YVNGGDLMYQIQQVG---------RFKE--------------------PHAVFYAAEIA  111 (323)
T ss_pred             EEEEe-----cCCEEEEEEc-CCCCCCHHHHHHHcC---------CCCH--------------------HHHHHHHHHHH
Confidence            99998     7789999999 999999999997654         4554                    45678999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      .||+|||++||+||||||+|||++. ++.+||+|||+++....         +.+.|+|||++. ...|+.++|||||||
T Consensus       112 ~aL~~LH~~~ivHrDlkp~Nill~~-~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwSlGv  189 (323)
T cd05616         112 IGLFFLHSKGIIYRDLKLDNVMLDS-EGHIKIADFGMCKENMWDGVTTKTFCGTPDYIAPEIIA-YQPYGKSVDWWAFGV  189 (323)
T ss_pred             HHHHHHHHCCEEecCCCHHHeEECC-CCcEEEccCCCceecCCCCCccccCCCChhhcCHHHhc-CCCCCCccchhchhH
Confidence            9999999999999999999999998 89999999999975321         246799999554 556899999999999


Q ss_pred             HHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH-
Q 005958          313 MMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC-  391 (667)
Q Consensus       313 iLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa-  391 (667)
                      ++|||++|++||.            +.....+...+   ...       ....+...++++++||.+||+.||++|+++ 
T Consensus       190 il~elltg~~Pf~------------~~~~~~~~~~i---~~~-------~~~~p~~~s~~~~~li~~~l~~~p~~R~~~~  247 (323)
T cd05616         190 LLYEMLAGQAPFE------------GEDEDELFQSI---MEH-------NVAYPKSMSKEAVAICKGLMTKHPGKRLGCG  247 (323)
T ss_pred             HHHHHHhCCCCCC------------CCCHHHHHHHH---HhC-------CCCCCCcCCHHHHHHHHHHcccCHHhcCCCC
Confidence            9999999999985            22232222222   111       112334678999999999999999999984 


Q ss_pred             ----HHHHcCCCCCCCCCC
Q 005958          392 ----LDALRHPFLCGPRWR  406 (667)
Q Consensus       392 ----~elL~HPwf~~~~~~  406 (667)
                          .++++||||...+|.
T Consensus       248 ~~~~~~i~~h~~~~~~~~~  266 (323)
T cd05616         248 PEGERDIKEHAFFRYIDWE  266 (323)
T ss_pred             CCCHHHHhcCCCcCCCCHH
Confidence                899999999998764

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=8.4e-41  Score=357.56  Aligned_cols=265  Identities=15%  Similarity=0.188  Sum_probs=205.2

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      +..++|++.+.||+|+||    .||+|++..     ++..||+|++...   ...+.+.+|+++|++++      ||||+
T Consensus         2 l~~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~------h~~iv   66 (331)
T cd06649           2 LKDDDFERISELGAGNGG----VVTKVQHKP-----SGLIMARKLIHLEIKPAIRNQIIRELQVLHECN------SPYIV   66 (331)
T ss_pred             CCcccceEEEeecCCCCE----EEEEEEECC-----CCcEEEEEEeecccCHHHHHHHHHHHHHHHHCC------CCCCC
Confidence            346899999999999999    999999998     7899999998753   23356789999999994      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++.     ..+.+++||| |+++|+|.+++....         .+++                    ..+..++.|
T Consensus        67 ~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~~~~~~  111 (331)
T cd06649          67 GFYGAFY-----SDGEISICME-HMDGGSLDQVLKEAK---------RIPE--------------------EILGKVSIA  111 (331)
T ss_pred             eEEEEEE-----ECCEEEEEee-cCCCCcHHHHHHHcC---------CCCH--------------------HHHHHHHHH
Confidence            9999998     7789999999 999999999998754         3443                    457889999


Q ss_pred             HHHHHHHHHHC-CCcccCCCCCcEEEcCCCCeEEEeeecccccccC-------CCCCCCCcccccCCCCCCchhhHHHHH
Q 005958          240 LLIGVNYLHSH-GLAHTELRLENVHISPVDRHIKVGILGNAADFYE-------DGPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       240 Il~aL~yLHs~-gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-------~~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      ++.||.|||+. +|+||||||+|||++. ++.+||+|||++.....       +.+.|+|||++. ...++.++||||||
T Consensus       112 i~~~l~~lH~~~~ivH~dlkp~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~g~~~y~aPE~~~-~~~~~~~~DiwslG  189 (331)
T cd06649         112 VLRGLAYLREKHQIMHRDVKPSNILVNS-RGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQ-GTHYSVQSDIWSMG  189 (331)
T ss_pred             HHHHHHHHhhcCCEEcCCCChhhEEEcC-CCcEEEccCcccccccccccccCCCCcCcCCHhHhc-CCCCCchHhHHHHH
Confidence            99999999986 6999999999999998 89999999999975533       236899999654 45689999999999


Q ss_pred             HHHHHHHhCCCCChhhh--hhhhhhhc---cC--------------------------CChhHHHHHHHHHhccCCCCCC
Q 005958          312 FMMAKMVLRELMDPLIF--TKFKSFLT---KG--------------------------IDPSCLREFLLQVLNRNSSSGN  360 (667)
Q Consensus       312 viLyemltG~~PF~~~~--~~~~~~~~---~g--------------------------~~~~~l~~~~~~~~~~~~~~~~  360 (667)
                      |++|||++|+.||....  .+...+..   .+                          .+.....+....+.....+.  
T Consensus       190 ~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  267 (331)
T cd06649         190 LSLVELAIGRYPIPPPDAKELEAIFGRPVVDGEEGEPHSISPRPRPPGRPVSGHGMDSRPAMAIFELLDYIVNEPPPK--  267 (331)
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHhcccccccccCCccccCcccccccccccccccccccchhHHHHHHHHHhCCCcC--
Confidence            99999999999996321  11111000   00                          00001111111111111110  


Q ss_pred             CCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          361 TGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       361 ~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                         .....+++++++||.+||++||++|||+.|+|+||||+...
T Consensus       268 ---~~~~~~~~~l~~li~~~L~~~P~~Rpt~~ell~h~~~~~~~  308 (331)
T cd06649         268 ---LPNGVFTPDFQEFVNKCLIKNPAERADLKMLMNHTFIKRSE  308 (331)
T ss_pred             ---CCCccccHHHHHHHHHHccCCcccCCCHHHHhcChHHhhcc
Confidence               01124678999999999999999999999999999998755

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=2.8e-41  Score=367.29  Aligned_cols=255  Identities=15%  Similarity=0.231  Sum_probs=206.2

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCC
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      ....++|++.+.||+|+||    .||+|++..     +++.||+|++.+..     ....+.+|+.+++.+      +||
T Consensus        39 ~~~~~~y~~~~~lg~G~~g----~Vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~------~h~  103 (370)
T cd05596          39 RMKAEDFDVIKVIGRGAFG----EVQLVRHKS-----SKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHA------NSE  103 (370)
T ss_pred             CCCHHHcEEEEEEeeCCCE----EEEEEEECC-----CCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhC------CCC
Confidence            3556899999999999999    999999998     79999999997532     223457899999998      599


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++.     +.+.+|+||| |+++|+|.+++...          .+++                    ..++.+
T Consensus       104 ~iv~~~~~~~-----~~~~~~lv~E-y~~gg~L~~~l~~~----------~l~~--------------------~~~~~~  147 (370)
T cd05596         104 WIVQLHYAFQ-----DDKYLYMVME-YMPGGDLVNLMSNY----------DIPE--------------------KWARFY  147 (370)
T ss_pred             CcceEEEEEe-----cCCEEEEEEc-CCCCCcHHHHHHhc----------CCCH--------------------HHHHHH
Confidence            9999999998     7889999999 99999999998753          3444                    356779


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC----------CCCCCCCcccccCC---CCCCc
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE----------DGPNNSSPDSNMDR---RQMMI  303 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~----------~~~~Y~APE~l~~~---~~ys~  303 (667)
                      +.||+.||+|||++||+||||||+|||++. ++.+||+|||++.....          +.+.|+|||++.+.   ..++.
T Consensus       148 ~~qi~~aL~~LH~~~ivHrDLkp~NILl~~-~~~~kL~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~  226 (370)
T cd05596         148 TAEVVLALDAIHSMGFIHRDVKPDNMLLDK-SGHLKLADFGTCMKMDANGMVRCDTAVGTPDYISPEVLKSQGGDGYYGR  226 (370)
T ss_pred             HHHHHHHHHHHHHCCeeccCCCHHHEEEcC-CCCEEEEeccceeeccCCCcccCCCCCCCcCeECHHHhccCCCCCCCCC
Confidence            999999999999999999999999999998 89999999999976532          23679999976543   34889


Q ss_pred             hhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhc
Q 005958          304 AFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLAT  383 (667)
Q Consensus       304 ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~  383 (667)
                      ++|||||||++|||++|++||..            .....   ....+.....   ...++....++.++++||.+||+.
T Consensus       227 ~~DiwSlGvilyelltG~~Pf~~------------~~~~~---~~~~i~~~~~---~~~~~~~~~~s~~~~~li~~~L~~  288 (370)
T cd05596         227 ECDWWSVGVFLYEMLVGDTPFYA------------DSLVG---TYSKIMDHKN---SLTFPDDIEISKQAKDLICAFLTD  288 (370)
T ss_pred             ceeeeehhHHHHHHHhCCCCcCC------------CCHHH---HHHHHHcCCC---cCCCCCcCCCCHHHHHHHHHHccC
Confidence            99999999999999999999952            12111   1122221111   011222335789999999999999


Q ss_pred             CcCC--CCCHHHHHcCCCCCCCCCC
Q 005958          384 KPSK--RISCLDALRHPFLCGPRWR  406 (667)
Q Consensus       384 DP~k--RpSa~elL~HPwf~~~~~~  406 (667)
                      +|++  |+|++++++||||++..|.
T Consensus       289 ~p~r~~R~s~~ell~h~~~~~~~~~  313 (370)
T cd05596         289 REVRLGRNGVDEIKSHPFFKNDQWT  313 (370)
T ss_pred             hhhccCCCCHHHHhcCcccCCCChh
Confidence            9998  9999999999999987754

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=100.00  E-value=2.1e-41  Score=366.34  Aligned_cols=251  Identities=17%  Similarity=0.226  Sum_probs=202.1

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ++|++.+.||+|+||    .||+|.+..     +++.||||++....     ....+.+|+.++..+      +||||++
T Consensus         1 ~~f~~~~~lG~G~~g----~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~iv~   65 (360)
T cd05627           1 DDFESLKVIGRGAFG----EVRLVQKKD-----TGHIYAMKILRKADMLEKEQVAHIRAERDILVEA------DGAWVVK   65 (360)
T ss_pred             CCceEEEEEeeCCCE----EEEEEEECC-----CCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhC------CCCCEee
Confidence            479999999999999    999999998     79999999997532     224567899999998      4999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     +.+.+|+||| |+++|+|.+++.+.+         .+++                    ..++.++.||
T Consensus        66 ~~~~~~-----~~~~~~lv~E-~~~gg~L~~~l~~~~---------~l~~--------------------~~~~~~~~qi  110 (360)
T cd05627          66 MFYSFQ-----DKRNLYLIME-FLPGGDMMTLLMKKD---------TLSE--------------------EATQFYIAET  110 (360)
T ss_pred             EEEEEE-----cCCEEEEEEe-CCCCccHHHHHHhcC---------CCCH--------------------HHHHHHHHHH
Confidence            999998     7889999999 999999999998754         4554                    4567899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeeccccccc-------------------------------------
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFY-------------------------------------  283 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~-------------------------------------  283 (667)
                      +.||+|||++||+||||||+|||++. ++.+||+|||++....                                     
T Consensus       111 ~~~L~~lH~~givHrDLkp~NIli~~-~~~vkL~DfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (360)
T cd05627         111 VLAIDAIHQLGFIHRDIKPDNLLLDA-KGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNR  189 (360)
T ss_pred             HHHHHHHHHCCeEccCCCHHHEEECC-CCCEEEeeccCCcccccccccccccccccCCcccccccccccccccccccccc
Confidence            99999999999999999999999998 8999999999986432                                     


Q ss_pred             -------CCCCCCCCcccccCCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCC
Q 005958          284 -------EDGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNS  356 (667)
Q Consensus       284 -------~~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~  356 (667)
                             .+.+.|+|||++. ...|+.++|||||||++|||++|++||..            ..+......   +.... 
T Consensus       190 ~~~~~~~~gt~~Y~APE~~~-~~~~~~~~DiwSlGvilyel~tG~~Pf~~------------~~~~~~~~~---i~~~~-  252 (360)
T cd05627         190 RQLAYSTVGTPDYIAPEVFM-QTGYNKLCDWWSLGVIMYEMLIGYPPFCS------------ETPQETYRK---VMNWK-  252 (360)
T ss_pred             cccccccCCCccccCHHHHc-CCCCCCcceeccccceeeecccCCCCCCC------------CCHHHHHHH---HHcCC-
Confidence                   1346799999654 45689999999999999999999999952            222221111   11100 


Q ss_pred             CCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC---CHHHHHcCCCCCCCCCCC
Q 005958          357 SSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI---SCLDALRHPFLCGPRWRV  407 (667)
Q Consensus       357 ~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp---Sa~elL~HPwf~~~~~~~  407 (667)
                        ....++....+++++++||.+|+. ||.+|+   ++.++++||||++.+|..
T Consensus       253 --~~~~~p~~~~~s~~~~~li~~l~~-~p~~R~~~~~~~ei~~hp~f~~~~~~~  303 (360)
T cd05627         253 --ETLVFPPEVPISEKAKDLILRFCT-DSENRIGSNGVEEIKSHPFFEGVDWGH  303 (360)
T ss_pred             --CceecCCCCCCCHHHHHHHHHhcc-ChhhcCCCCCHHHHhcCCCCCCCCHHH
Confidence              001112223478899999999874 999998   489999999999988754

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=100.00  E-value=7.7e-41  Score=348.63  Aligned_cols=271  Identities=23%  Similarity=0.294  Sum_probs=200.3

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      +|++.+.||+|+||    +||+|+++.     +++.||+|.++...    ......+|+.+++.++   .++||||++++
T Consensus         1 ~y~~~~~lg~g~~g----~v~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~---~~~h~ni~~~~   68 (288)
T cd07863           1 QYEPVAEIGVGAYG----TVYKARDPH-----SGHFVALKSVRVQTNEDGLPLSTVREVALLKRLE---AFDHPNIVRLM   68 (288)
T ss_pred             CceEeeEEeecCCe----EEEEEEECC-----CCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhh---hcCCCCeeeee
Confidence            58999999999999    999999998     89999999987522    2234578888888874   23699999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++..........+++||| |+++ +|.+++.....       ..+++                    ..++.++.||+.
T Consensus        69 ~~~~~~~~~~~~~~~lv~e-~~~~-~l~~~~~~~~~-------~~~~~--------------------~~~~~~~~qi~~  119 (288)
T cd07863          69 DVCATSRTDRETKVTLVFE-HVDQ-DLRTYLDKVPP-------PGLPA--------------------ETIKDLMRQFLR  119 (288)
T ss_pred             eeeccccCCCCceEEEEEc-cccc-CHHHHHHhcCC-------CCCCH--------------------HHHHHHHHHHHH
Confidence            9987443334567999999 9987 99999876421       12443                    567889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      ||.|||++||+||||||+|||++. ++.+||+|||++......        ...|+|||++. ...++.++||||+||++
T Consensus       120 al~~lH~~~ivH~dikp~Nili~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~DiwslG~~l  197 (288)
T cd07863         120 GLDFLHANCIVHRDLKPENILVTS-GGQVKLADFGLARIYSCQMALTPVVVTLWYRAPEVLL-QSTYATPVDMWSVGCIF  197 (288)
T ss_pred             HHHHHHhCCeecCCCCHHHEEECC-CCCEEECccCccccccCcccCCCccccccccCchHhh-CCCCCCcchhhhHHHHH
Confidence            999999999999999999999998 899999999999765432        25699999654 45689999999999999


Q ss_pred             HHHHhCCCCChhh---hhhhhhhhccCCChhH-HHHHHHHHhccCCCCC-CCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          315 AKMVLRELMDPLI---FTKFKSFLTKGIDPSC-LREFLLQVLNRNSSSG-NTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       315 yemltG~~PF~~~---~~~~~~~~~~g~~~~~-l~~~~~~~~~~~~~~~-~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      |+|++|.+||...   ....+++...+.+... +............+.. .......+.++.++++||.+||++||++||
T Consensus       198 ~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~  277 (288)
T cd07863         198 AEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVTLPRGAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRI  277 (288)
T ss_pred             HHHHhCCcCcCCCCHHHHHHHHHHHhCCCChhhCcccccccccccCCCCCCchHHhCcCcCHHHHHHHHHHhccCcccCC
Confidence            9999999998532   1122222222221110 0000000000000000 000123346788999999999999999999


Q ss_pred             CHHHHHcCCCC
Q 005958          390 SCLDALRHPFL  400 (667)
Q Consensus       390 Sa~elL~HPwf  400 (667)
                      |+.|++.||||
T Consensus       278 t~~~~l~hp~f  288 (288)
T cd07863         278 SAFRALQHPFF  288 (288)
T ss_pred             CHHHHhcCCCC
Confidence            99999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=6.9e-41  Score=361.38  Aligned_cols=251  Identities=18%  Similarity=0.261  Sum_probs=199.3

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      .....++|+++++||+|+||    .||+|++..     +++.||||++...   .....+.+|+++++.++      |+|
T Consensus        69 ~~~~~~~~~~~~~lg~G~~g----~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~------h~~  133 (353)
T PLN00034         69 AAKSLSELERVNRIGSGAGG----TVYKVIHRP-----TGRLYALKVIYGNHEDTVRRQICREIEILRDVN------HPN  133 (353)
T ss_pred             CCCCHHHHhhhhhccCCCCe----EEEEEEECC-----CCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCC------CCC
Confidence            34456889999999999999    999999987     7899999998643   23356789999999994      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     ..+.+++||| |+.+|+|.+..             .+++                    ..+..++
T Consensus       134 iv~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~~-------------~~~~--------------------~~~~~i~  174 (353)
T PLN00034        134 VVKCHDMFD-----HNGEIQVLLE-FMDGGSLEGTH-------------IADE--------------------QFLADVA  174 (353)
T ss_pred             cceeeeEec-----cCCeEEEEEe-cCCCCcccccc-------------cCCH--------------------HHHHHHH
Confidence            999999998     7789999999 99999986432             1222                    3567899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccC----CCCCCch
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMD----RRQMMIA  304 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~----~~~ys~k  304 (667)
                      .||+.||.|||++||+||||||+|||++. ++.+||+|||++..+..         +...|+|||.+..    ...++.+
T Consensus       175 ~qi~~aL~~LH~~~ivHrDlkp~NIll~~-~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~  253 (353)
T PLN00034        175 RQILSGIAYLHRRHIVHRDIKPSNLLINS-AKNVKIADFGVSRILAQTMDPCNSSVGTIAYMSPERINTDLNHGAYDGYA  253 (353)
T ss_pred             HHHHHHHHHHHHCCEeecCCCHHHEEEcC-CCCEEEcccccceecccccccccccccCccccCccccccccccCcCCCcc
Confidence            99999999999999999999999999998 89999999999976532         2367999996532    2344679


Q ss_pred             hhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          305 FDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       305 sDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      +|||||||++|||++|+.||...            ....+......+....      .......+++++++||.+||+.|
T Consensus       254 ~DvwslGvil~el~~g~~pf~~~------------~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~li~~~l~~~  315 (353)
T PLN00034        254 GDIWSLGVSILEFYLGRFPFGVG------------RQGDWASLMCAICMSQ------PPEAPATASREFRHFISCCLQRE  315 (353)
T ss_pred             hhHHHHHHHHHHHHhCCCCCCCC------------CCccHHHHHHHHhccC------CCCCCCccCHHHHHHHHHHccCC
Confidence            99999999999999999998511            1111122221111111      11223467889999999999999


Q ss_pred             cCCCCCHHHHHcCCCCCCCC
Q 005958          385 PSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       385 P~kRpSa~elL~HPwf~~~~  404 (667)
                      |++|||+.|+|+||||....
T Consensus       316 P~~Rpt~~ell~hp~~~~~~  335 (353)
T PLN00034        316 PAKRWSAMQLLQHPFILRAQ  335 (353)
T ss_pred             hhhCcCHHHHhcCcccccCC
Confidence            99999999999999998864

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=5.6e-41  Score=357.67  Aligned_cols=246  Identities=16%  Similarity=0.240  Sum_probs=198.6

Q ss_pred             eEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           88 FKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        88 y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      |++.+.||+|+||    .||+|.+..     +++.||||++++..     ..+.+.+|+.++..++   .+.||||++++
T Consensus         1 y~i~~~lg~G~~g----~Vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~---~l~hp~i~~~~   68 (324)
T cd05589           1 FRCLAVLGRGHFG----KVLLAEYKK-----TGELYAIKALKKGDIIARDEVESLMCEKRIFETAN---SERHPFLVNLF   68 (324)
T ss_pred             CeEEEEEeecCCE----EEEEEEECC-----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcc---ccCCCChhcee
Confidence            7889999999999    999999987     79999999997532     2244567777765543   23699999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     ..+.+|+||| |+++|+|..++...          .+++                    ..++.++.||+.
T Consensus        69 ~~~~-----~~~~~~lv~E-~~~~~~L~~~~~~~----------~l~~--------------------~~~~~~~~qi~~  112 (324)
T cd05589          69 ACFQ-----TEDHVCFVME-YAAGGDLMMHIHTD----------VFSE--------------------PRAVFYAACVVL  112 (324)
T ss_pred             eEEE-----cCCEEEEEEc-CCCCCcHHHHhhcC----------CCCH--------------------HHHHHHHHHHHH
Confidence            9998     7789999999 99999999888642          3554                    456789999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      ||+|||++||+||||||+|||++. ++.+||+|||++.....         +.+.|+|||.+. ...++.++|||||||+
T Consensus       113 al~~lH~~~ivHrdlkp~Nill~~-~~~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~-~~~~~~~~DiwslG~i  190 (324)
T cd05589         113 GLQYLHENKIVYRDLKLDNLLLDT-EGFVKIADFGLCKEGMGFGDRTSTFCGTPEFLAPEVLT-ETSYTRAVDWWGLGVL  190 (324)
T ss_pred             HHHHHHhCCeEecCCCHHHeEECC-CCcEEeCcccCCccCCCCCCcccccccCccccCHhHhc-CCCCCcccchhhHHHH
Confidence            999999999999999999999998 89999999999875321         236899999554 4568999999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC----
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI----  389 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp----  389 (667)
                      +|||++|++||..            .+.......   +....       ...+..+++++.+||.+||+.||++||    
T Consensus       191 l~el~~G~~pf~~------------~~~~~~~~~---i~~~~-------~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~  248 (324)
T cd05589         191 IYEMLVGESPFPG------------DDEEEVFDS---IVNDE-------VRYPRFLSREAISIMRRLLRRNPERRLGSGE  248 (324)
T ss_pred             HHHHHhCCCCCCC------------CCHHHHHHH---HHhCC-------CCCCCCCCHHHHHHHHHHhhcCHhHcCCCCC
Confidence            9999999999852            222222222   11111       122345788999999999999999999    


Q ss_pred             -CHHHHHcCCCCCCCCC
Q 005958          390 -SCLDALRHPFLCGPRW  405 (667)
Q Consensus       390 -Sa~elL~HPwf~~~~~  405 (667)
                       ++.++++||||++..|
T Consensus       249 ~~~~~l~~~~~f~~~~~  265 (324)
T cd05589         249 KDAEDVKKQPFFRDINW  265 (324)
T ss_pred             CCHHHHhhCCCcCCCCH
Confidence             7999999999998764

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=1.8e-41  Score=361.94  Aligned_cols=252  Identities=18%  Similarity=0.218  Sum_probs=204.1

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ++|++.+.||+|+||    +||+|.+..     +++.||||+++...     ..+.+.+|+.+++.+      +||||++
T Consensus         1 ~~y~~~~~lg~G~~g----~Vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~------~~~~i~~   65 (330)
T cd05601           1 KDFDVKSLVGRGHFG----EVQVVREKA-----TGDIYAMKVMKKSVLLAQETVSFFEEERDILSIS------NSPWIPQ   65 (330)
T ss_pred             CCceEEEEEEeccCE----EEEEEEECC-----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhC------CCCCCcc
Confidence            479999999999999    999999998     79999999998642     224467889999888      5999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     +.+.+|+||| |+++|+|.+++.+..        ..+++                    ..++.++.||
T Consensus        66 ~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~--------~~l~~--------------------~~~~~~~~qi  111 (330)
T cd05601          66 LQYAFQ-----DKDNLYLVME-YQPGGDLLSLLNRYE--------DQFDE--------------------DMAQFYLAEL  111 (330)
T ss_pred             eeeEEe-----cCCeEEEEEC-CCCCCCHHHHHHHhc--------CCCCH--------------------HHHHHHHHHH
Confidence            999998     7789999999 999999999998752        14554                    4567799999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC----------CCCCCCCcccccC-----CCCCCchh
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE----------DGPNNSSPDSNMD-----RRQMMIAF  305 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~----------~~~~Y~APE~l~~-----~~~ys~ks  305 (667)
                      +.||.|||++||+||||||+|||++. ++.+||+|||++..+..          +.+.|+|||++..     ...++.++
T Consensus       112 ~~aL~~lH~~~i~H~Dlkp~NIll~~-~~~~kL~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~  190 (330)
T cd05601         112 VLAIHSVHQMGYVHRDIKPENVLIDR-TGHIKLADFGSAARLTANKMVNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVEC  190 (330)
T ss_pred             HHHHHHHHHCCeEcccCchHheEECC-CCCEEeccCCCCeECCCCCceeeecccCCccccCHHHhccccccccCCCCCcc
Confidence            99999999999999999999999998 89999999999976543          2367999997652     45688999


Q ss_pred             hHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCc
Q 005958          306 DMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       306 DIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      |||||||++|||++|+.||...            .....   +..++...   ....++....+++++++||.+||. ||
T Consensus       191 DiwslG~il~el~~g~~Pf~~~------------~~~~~---~~~i~~~~---~~~~~~~~~~~~~~~~~li~~ll~-~p  251 (330)
T cd05601         191 DWWSLGVIAYEMIYGRSPFHEG------------TSAKT---YNNIMNFQ---RFLKFPEDPKVSSDFLDLIQSLLC-GQ  251 (330)
T ss_pred             eeecccceeeeeccCCCCCCCC------------CHHHH---HHHHHcCC---CccCCCCCCCCCHHHHHHHHHHcc-Ch
Confidence            9999999999999999998521            11111   11111110   011123334678999999999998 99


Q ss_pred             CCCCCHHHHHcCCCCCCCCCC
Q 005958          386 SKRISCLDALRHPFLCGPRWR  406 (667)
Q Consensus       386 ~kRpSa~elL~HPwf~~~~~~  406 (667)
                      ++|||++++++||||....|.
T Consensus       252 ~~R~t~~~l~~h~~~~~~~~~  272 (330)
T cd05601         252 KERLGYEGLCCHPFFSKIDWN  272 (330)
T ss_pred             hhCCCHHHHhCCCCcCCCCHH
Confidence            999999999999999987753

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=100.00  E-value=1.3e-40  Score=350.41  Aligned_cols=270  Identities=22%  Similarity=0.276  Sum_probs=206.2

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      .+++|++.+.||.|+||    .||+|.+..     +++.||+|.+....   ......+|+.+++.++      ||||++
T Consensus         4 ~~~~y~~~~~lg~g~~g----~vy~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~------h~nI~~   68 (301)
T cd07873           4 KLETYIKLDKLGEGTYA----TVYKGRSKL-----TDNLVALKEIRLEHEEGAPCTAIREVSLLKDLK------HANIVT   68 (301)
T ss_pred             cccceEEeeEeccCcCE----EEEEEEEcC-----CCcEEEEEEEecccccCchhHHHHHHHHHHhcC------CCCcce
Confidence            46889999999999999    999999987     78999999987432   2345678999999995      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     ..+..++||| |+++ +|.+++....        ..+++                    ..++.++.||
T Consensus        69 ~~~~~~-----~~~~~~lv~e-~~~~-~l~~~l~~~~--------~~~~~--------------------~~~~~~~~qi  113 (301)
T cd07873          69 LHDIIH-----TEKSLTLVFE-YLDK-DLKQYLDDCG--------NSINM--------------------HNVKLFLFQL  113 (301)
T ss_pred             EEEEEe-----cCCeEEEEEe-cccc-CHHHHHHhcC--------CCCCH--------------------HHHHHHHHHH
Confidence            999998     7789999999 9986 9999987642        13343                    4578899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      +.||.|||++||+|+||||+|||++. ++.+||+|||++.....         ..+.|+|||.+.+...++.++||||||
T Consensus       114 ~~aL~~lH~~~i~H~dlkp~Nil~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG  192 (301)
T cd07873         114 LRGLNYCHRRKVLHRDLKPQNLLINE-RGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVG  192 (301)
T ss_pred             HHHHHHHHhCCeeCCCCCHHHEEECC-CCcEEECcCcchhccCCCCCcccccceeecccCcHHHhCCCCCccHHHHHHHH
Confidence            99999999999999999999999998 89999999999875432         136799999777767789999999999


Q ss_pred             HHHHHHHhCCCCChhhh---hhhhhhhccCCChhHH-HHHHHHH-hcc-CCCC-CCC-CcccccCCCHHHHHHHHHhhhc
Q 005958          312 FMMAKMVLRELMDPLIF---TKFKSFLTKGIDPSCL-REFLLQV-LNR-NSSS-GNT-GFQILDRNWGAGWNLLSLLLAT  383 (667)
Q Consensus       312 viLyemltG~~PF~~~~---~~~~~~~~~g~~~~~l-~~~~~~~-~~~-~~~~-~~~-~~~~~~~~s~e~~dLI~~~L~~  383 (667)
                      |++|||++|++||....   +...+....+.+.... ...+... ... ..+. ... .......+++++++||.+||++
T Consensus       193 ~~l~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~  272 (301)
T cd07873         193 CIFYEMSTGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKSYNYPKYRADCLHNHAPRLDSDGAELLSKLLQF  272 (301)
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChhhchhhhccccccccccCccccccHHhhcCCCCHHHHHHHHHHhcC
Confidence            99999999999997322   1111122222222111 1111000 000 0000 000 0012345788999999999999


Q ss_pred             CcCCCCCHHHHHcCCCCCCCC
Q 005958          384 KPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       384 DP~kRpSa~elL~HPwf~~~~  404 (667)
                      ||.+|||++|+|+||||+...
T Consensus       273 dp~~R~t~~eil~h~~f~~~~  293 (301)
T cd07873         273 EGRKRISAEEAMKHPYFHCLG  293 (301)
T ss_pred             CcccCcCHHHHhcCccccccc
Confidence            999999999999999998765

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=4.3e-41  Score=358.11  Aligned_cols=242  Identities=18%  Similarity=0.237  Sum_probs=197.0

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEE
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVS  166 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~  166 (667)
                      +.||+|+||    .||+|++..     +++.||||++.+..     ..+....|++++..+.     +||||+++++++.
T Consensus         1 ~~lG~G~~g----~Vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~-----~hp~i~~~~~~~~   66 (321)
T cd05591           1 KVLGKGSFG----KVMLAELKG-----TDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAA-----KHPFLTALHCCFQ   66 (321)
T ss_pred             CccccCCCe----EEEEEEECC-----CCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhcc-----CCCCccceeeEEE
Confidence            469999999    999999987     78999999997632     2234567888888775     6999999999999


Q ss_pred             ecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHH
Q 005958          167 SHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNY  246 (667)
Q Consensus       167 ~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~y  246 (667)
                           ..+.+|+||| |+++|+|.+++...+         .+++                    ..++.++.||+.||.|
T Consensus        67 -----~~~~~~lv~E-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~~~~~qi~~aL~~  111 (321)
T cd05591          67 -----TKDRLFFVME-YVNGGDLMFQIQRSR---------KFDE--------------------PRSRFYAAEVTLALMF  111 (321)
T ss_pred             -----cCCeEEEEEe-CCCCCcHHHHHHHcC---------CCCH--------------------HHHHHHHHHHHHHHHH
Confidence                 7789999999 999999999997654         4554                    3467799999999999


Q ss_pred             HHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHHHHHHH
Q 005958          247 LHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKM  317 (667)
Q Consensus       247 LHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyem  317 (667)
                      ||++||+||||||+|||++. ++.+||+|||++.....         +.+.|+|||++ ....|+.++|||||||++|||
T Consensus       112 LH~~~ivHrDikp~Nill~~-~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DvwslG~il~el  189 (321)
T cd05591         112 LHRHGVIYRDLKLDNILLDA-EGHCKLADFGMCKEGILNGVTTTTFCGTPDYIAPEIL-QELEYGPSVDWWALGVLMYEM  189 (321)
T ss_pred             HHHCCeeccCCCHHHeEECC-CCCEEEeecccceecccCCccccccccCccccCHHHH-cCCCCCCccceechhHHHHHH
Confidence            99999999999999999998 89999999999875321         23679999955 455689999999999999999


Q ss_pred             HhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC-------C
Q 005958          318 VLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI-------S  390 (667)
Q Consensus       318 ltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp-------S  390 (667)
                      ++|++||..            .......+   .+....       ......+++++.+||.+||+.||++|+       +
T Consensus       190 ~tg~~Pf~~------------~~~~~~~~---~i~~~~-------~~~p~~~~~~~~~ll~~~L~~dp~~R~~~~~~~~~  247 (321)
T cd05591         190 MAGQPPFEA------------DNEDDLFE---SILHDD-------VLYPVWLSKEAVSILKAFMTKNPNKRLGCVASQGG  247 (321)
T ss_pred             hcCCCCCCC------------CCHHHHHH---HHHcCC-------CCCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCC
Confidence            999999852            22222222   222211       112334688999999999999999999       9


Q ss_pred             HHHHHcCCCCCCCCCC
Q 005958          391 CLDALRHPFLCGPRWR  406 (667)
Q Consensus       391 a~elL~HPwf~~~~~~  406 (667)
                      ++++++||||....|.
T Consensus       248 ~~~~~~hp~~~~~~~~  263 (321)
T cd05591         248 EDAIKQHPFFKEIDWV  263 (321)
T ss_pred             HHHHhcCCccCCCCHH
Confidence            9999999999887753

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=100.00  E-value=1.4e-40  Score=359.52  Aligned_cols=269  Identities=20%  Similarity=0.256  Sum_probs=203.2

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      ..++|++.+.||+|+||    .||+|.+..     +++.||||++...    .......+|+.+++.+      +||||+
T Consensus        19 ~~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~niv   83 (359)
T cd07876          19 VLKRYQQLKPIGSGAQG----IVCAAFDTV-----LGINVAVKKLSRPFQNQTHAKRAYRELVLLKCV------NHKNII   83 (359)
T ss_pred             hhhceEEEEEeecCCCE----EEEEEEEcC-----CCceeEEEEecccccchhHHHHHHHHHHHHHhC------CCCCEe
Confidence            35899999999999999    999999987     7999999998642    2334567899999999      499999


Q ss_pred             EEEEEEEeccc-CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          160 QVHGYVSSHTT-SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       160 ~l~~~~~~~~~-~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      ++++++..... .....+|+||| |+++ +|.+.+..           .+++                    ..++.++.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~lv~e-~~~~-~l~~~~~~-----------~~~~--------------------~~~~~~~~  130 (359)
T cd07876          84 SLLNVFTPQKSLEEFQDVYLVME-LMDA-NLCQVIHM-----------ELDH--------------------ERMSYLLY  130 (359)
T ss_pred             eeeeeeccCCCccccceeEEEEe-CCCc-CHHHHHhc-----------cCCH--------------------HHHHHHHH
Confidence            99999873311 12346899999 9987 78777653           3443                    34678999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHH
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      ||+.||.|||++||+||||||+|||++. ++.+||+|||+++.....        .+.|+|||++. ...|+.++|||||
T Consensus       131 qi~~~L~~LH~~~ivHrDlkp~NIl~~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~~DiwSl  208 (359)
T cd07876         131 QMLCGIKHLHSAGIIHRDLKPSNIVVKS-DCTLKILDFGLARTACTNFMMTPYVVTRYYRAPEVIL-GMGYKENVDIWSV  208 (359)
T ss_pred             HHHHHHHHHHhCCcccCCCCHHHEEECC-CCCEEEecCCCccccccCccCCCCcccCCCCCchhcc-CCCCCcchhhHHH
Confidence            9999999999999999999999999998 899999999999754322        36799999654 4568999999999


Q ss_pred             HHHHHHHHhCCCCChhhh---hhhhhhhccCCChhHHHHHHH----HHhccCCCCCCCC-------------cccccCCC
Q 005958          311 GFMMAKMVLRELMDPLIF---TKFKSFLTKGIDPSCLREFLL----QVLNRNSSSGNTG-------------FQILDRNW  370 (667)
Q Consensus       311 GviLyemltG~~PF~~~~---~~~~~~~~~g~~~~~l~~~~~----~~~~~~~~~~~~~-------------~~~~~~~s  370 (667)
                      ||++|+|++|++||...+   +........+.+.........    ......+......             .......+
T Consensus       209 G~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (359)
T cd07876         209 GCIMGELVKGSVIFQGTDHIDQWNKVIEQLGTPSAEFMNRLQPTVRNYVENRPQYPGISFEELFPDWIFPSESERDKLKT  288 (359)
T ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCCCCCCcchhhhccccccccccccccccc
Confidence            999999999999997432   223333344544433322211    1111111110000             01112346


Q ss_pred             HHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCC
Q 005958          371 GAGWNLLSLLLATKPSKRISCLDALRHPFLCG  402 (667)
Q Consensus       371 ~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~  402 (667)
                      +++++||.+||++||++|||++|+|+||||..
T Consensus       289 ~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~  320 (359)
T cd07876         289 SQARDLLSKMLVIDPDKRISVDEALRHPYITV  320 (359)
T ss_pred             hhHHHHHHHHhccCcccCCCHHHHhcCchhhh
Confidence            78999999999999999999999999999975

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=6.5e-41  Score=356.28  Aligned_cols=241  Identities=17%  Similarity=0.212  Sum_probs=195.3

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEE
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVS  166 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~  166 (667)
                      +.||+|+||    .||+|+++.     +++.||+|+++...     .......|..++..+.     +||||+++++++.
T Consensus         1 ~~lg~G~~g----~V~~~~~~~-----~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~-----~~~~i~~~~~~~~   66 (316)
T cd05620           1 KVLGKGSFG----KVLLAELKG-----KGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAW-----ENPFLTHLYCTFQ   66 (316)
T ss_pred             CeeeeCCCe----EEEEEEECC-----CCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhcc-----CCCCccCeeEEEE
Confidence            479999999    999999998     79999999997632     2234567888887664     6999999999998


Q ss_pred             ecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHH
Q 005958          167 SHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNY  246 (667)
Q Consensus       167 ~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~y  246 (667)
                           ..+.+|+||| |+.+|+|.+++....         .+++                    ..++.++.||+.||+|
T Consensus        67 -----~~~~~~lv~E-~~~~g~L~~~i~~~~---------~~~~--------------------~~~~~~~~qi~~~l~~  111 (316)
T cd05620          67 -----TKEHLFFVME-FLNGGDLMFHIQDKG---------RFDL--------------------YRATFYAAEIVCGLQF  111 (316)
T ss_pred             -----eCCEEEEEEC-CCCCCcHHHHHHHcC---------CCCH--------------------HHHHHHHHHHHHHHHH
Confidence                 7789999999 999999999997654         4444                    4567799999999999


Q ss_pred             HHHCCCcccCCCCCcEEEcCCCCeEEEeeeccccccc---------CCCCCCCCcccccCCCCCCchhhHHHHHHHHHHH
Q 005958          247 LHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFY---------EDGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKM  317 (667)
Q Consensus       247 LHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~---------~~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyem  317 (667)
                      ||++||+||||||+|||++. ++.+||+|||++....         .+.+.|+|||++. ...|+.++||||+||++|||
T Consensus       112 lH~~~ivHrDlkp~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwslGvil~el  189 (316)
T cd05620         112 LHSKGIIYRDLKLDNVMLDR-DGHIKIADFGMCKENVFGDNRASTFCGTPDYIAPEILQ-GLKYTFSVDWWSFGVLLYEM  189 (316)
T ss_pred             HHHCCeEecCCCHHHeEECC-CCCEEeCccCCCeecccCCCceeccCCCcCccCHHHHc-CCCCCcccchhhhHHHHHHH
Confidence            99999999999999999998 8999999999987432         1247899999654 45689999999999999999


Q ss_pred             HhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH-HHHHc
Q 005958          318 VLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC-LDALR  396 (667)
Q Consensus       318 ltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa-~elL~  396 (667)
                      ++|+.||..            .+...+.+.+..   ..       ......++.++++||.+||+.||++|+++ +++++
T Consensus       190 ~~g~~Pf~~------------~~~~~~~~~~~~---~~-------~~~~~~~~~~~~~li~~~l~~dP~~R~~~~~~~~~  247 (316)
T cd05620         190 LIGQSPFHG------------DDEDELFESIRV---DT-------PHYPRWITKESKDILEKLFERDPTRRLGVVGNIRG  247 (316)
T ss_pred             HhCCCCCCC------------CCHHHHHHHHHh---CC-------CCCCCCCCHHHHHHHHHHccCCHHHcCCChHHHHc
Confidence            999999852            222222222211   11       11223478899999999999999999998 58999


Q ss_pred             CCCCCCCCC
Q 005958          397 HPFLCGPRW  405 (667)
Q Consensus       397 HPwf~~~~~  405 (667)
                      ||||....|
T Consensus       248 h~~f~~~~~  256 (316)
T cd05620         248 HPFFKTINW  256 (316)
T ss_pred             CCCcCCCCH
Confidence            999998764

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=100.00  E-value=1.2e-40  Score=352.20  Aligned_cols=272  Identities=20%  Similarity=0.261  Sum_probs=196.8

Q ss_pred             EeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEeccc
Q 005958           91 LDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTT  170 (667)
Q Consensus        91 ~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~~  170 (667)
                      +.+||+|+||    .||+|++....   ++..||+|.+..........+|+.++++++      ||||+++++++...  
T Consensus         6 g~~lG~G~~g----~Vy~~~~~~~~---~~~~~a~k~~~~~~~~~~~~~E~~~l~~l~------h~niv~~~~~~~~~--   70 (317)
T cd07867           6 GCKVGRGTYG----HVYKAKRKDGK---DEKEYALKQIEGTGISMSACREIALLRELK------HPNVIALQKVFLSH--   70 (317)
T ss_pred             ceEeccCCCe----eEEEEEecCCC---ccceEEEEEecCCCCcHHHHHHHHHHHhCC------CCCeeeEEEEEecc--
Confidence            4689999999    99999976421   568999999987655566789999999995      99999999998643  


Q ss_pred             CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHC
Q 005958          171 SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSH  250 (667)
Q Consensus       171 ~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs~  250 (667)
                       ....+++||| |+++ +|.+++.........                    .....++...++.++.||+.||.|||++
T Consensus        71 -~~~~~~lv~e-~~~~-~l~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~i~~qi~~aL~~lH~~  127 (317)
T cd07867          71 -SDRKVWLLFD-YAEH-DLWHIIKFHRASKAN--------------------KKPMQLPRSMVKSLLYQILDGIHYLHAN  127 (317)
T ss_pred             -CCCeEEEEEe-eeCC-cHHHHHHhhhccccC--------------------CCCccCCHHHHHHHHHHHHHHHHHHHhC
Confidence             5678999999 9887 999998754211100                    0111234467888999999999999999


Q ss_pred             CCcccCCCCCcEEEcC---CCCeEEEeeecccccccCC------------CCCCCCcccccCCCCCCchhhHHHHHHHHH
Q 005958          251 GLAHTELRLENVHISP---VDRHIKVGILGNAADFYED------------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMA  315 (667)
Q Consensus       251 gIvHrDLKPeNILl~~---~~~~vKL~DFGlA~~~~~~------------~~~Y~APE~l~~~~~ys~ksDIWSLGviLy  315 (667)
                      ||+||||||+|||+..   .++.+||+|||+|+.....            .+.|+|||++.+...++.++||||+||++|
T Consensus       128 ~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~  207 (317)
T cd07867         128 WVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFA  207 (317)
T ss_pred             CEEcCCCCHHHEEEccCCCCCCcEEEeeccceeccCCCcccccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHH
Confidence            9999999999999942   2678999999999765432            256999997777677899999999999999


Q ss_pred             HHHhCCCCChhh------------hhhhhhhhccCCChhHHHHHHHHHh-----cc---CCCCCCCCc-----ccccCCC
Q 005958          316 KMVLRELMDPLI------------FTKFKSFLTKGIDPSCLREFLLQVL-----NR---NSSSGNTGF-----QILDRNW  370 (667)
Q Consensus       316 emltG~~PF~~~------------~~~~~~~~~~g~~~~~l~~~~~~~~-----~~---~~~~~~~~~-----~~~~~~s  370 (667)
                      ||++|++||...            .+...++...|.+.....+.+....     ..   .........     ......+
T Consensus       208 el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (317)
T cd07867         208 ELLTSEPIFHCRQEDIKTSNPFHHDQLDRIFSVMGFPADKDWEDIRKMPEYPTLQKDFRRTTYANSSLIKYMEKHKVKPD  287 (317)
T ss_pred             HHHhCCCCcccccccccccccccHHHHHHHHHhcCCCChhhhhhhhhcccchhhhhhhcccccCCchhhhhhhcccCCCC
Confidence            999999999631            1122222333322221111110000     00   000000000     0112345


Q ss_pred             HHHHHHHHHhhhcCcCCCCCHHHHHcCCCC
Q 005958          371 GAGWNLLSLLLATKPSKRISCLDALRHPFL  400 (667)
Q Consensus       371 ~e~~dLI~~~L~~DP~kRpSa~elL~HPwf  400 (667)
                      ..+.+||.+||+.||.+|||++|+|+||||
T Consensus       288 ~~~~~ll~~~l~~dP~~R~t~~e~l~hp~f  317 (317)
T cd07867         288 SKVFLLLQKLLTMDPTKRITSEQALQDPYF  317 (317)
T ss_pred             hHHHHHHHHHhccCcccccCHHHHhcCCCC
Confidence            689999999999999999999999999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=8.2e-41  Score=357.50  Aligned_cols=250  Identities=18%  Similarity=0.251  Sum_probs=198.1

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEE
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVS  166 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~  166 (667)
                      +.||+|+||    .||+|.+..     +++.||||++++..     ..+.+.+|+.++..+.     +||||+++++++.
T Consensus         1 ~~lG~G~~g----~V~~~~~~~-----~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~-----~hp~Iv~~~~~~~   66 (329)
T cd05588           1 RVIGRGSYA----KVLLVELKK-----TRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETAS-----NHPFLVGLHSCFQ   66 (329)
T ss_pred             CeEeeCCCe----EEEEEEECC-----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcc-----CCCCCCceEEEEE
Confidence            479999999    999999998     79999999998632     2234678999999986     6999999999998


Q ss_pred             ecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHH
Q 005958          167 SHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNY  246 (667)
Q Consensus       167 ~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~y  246 (667)
                           ..+.+|+||| |+++|+|.+++...+         .+++                    ..++.++.||+.||.|
T Consensus        67 -----~~~~~~lv~e-~~~~g~L~~~~~~~~---------~l~~--------------------~~~~~~~~qi~~~l~~  111 (329)
T cd05588          67 -----TESRLFFVIE-FVSGGDLMFHMQRQR---------KLPE--------------------EHARFYSAEISLALNF  111 (329)
T ss_pred             -----cCCEEEEEEe-CCCCCCHHHHHHHcC---------CCCH--------------------HHHHHHHHHHHHHHHH
Confidence                 7789999999 999999999987654         4555                    4567899999999999


Q ss_pred             HHHCCCcccCCCCCcEEEcCCCCeEEEeeeccccccc---------CCCCCCCCcccccCCCCCCchhhHHHHHHHHHHH
Q 005958          247 LHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFY---------EDGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKM  317 (667)
Q Consensus       247 LHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~---------~~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyem  317 (667)
                      ||++||+||||||+|||++. ++.+||+|||+++...         .+.+.|+|||++. ...++.++|||||||++|+|
T Consensus       112 lH~~~ivH~dlkp~Nili~~-~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwslG~~l~el  189 (329)
T cd05588         112 LHERGIIYRDLKLDNVLLDA-EGHIKLTDYGMCKEGIRPGDTTSTFCGTPNYIAPEILR-GEDYGFSVDWWALGVLMFEM  189 (329)
T ss_pred             HHHCCeEecCCCHHHeEECC-CCCEEECcCccccccccCCCccccccCCccccCHHHHc-CCCCCCccceechHHHHHHH
Confidence            99999999999999999998 8999999999987421         1236799999654 45689999999999999999


Q ss_pred             HhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC------H
Q 005958          318 VLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS------C  391 (667)
Q Consensus       318 ltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS------a  391 (667)
                      ++|+.||.....       ...+.....+.........      ....+..+++++.+||.+||+.||.+|++      +
T Consensus       190 ~~g~~Pf~~~~~-------~~~~~~~~~~~~~~~~~~~------~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~  256 (329)
T cd05588         190 MAGRSPFDIVGM-------SDNPDQNTEDYLFQVILEK------QIRIPRSLSVKASSVLKGFLNKDPKERLGCHPQTGF  256 (329)
T ss_pred             HHCCCCcccccc-------cccccccchHHHHHHHHcC------CCCCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCH
Confidence            999999952210       0001111111211111111      12234567889999999999999999997      7


Q ss_pred             HHHHcCCCCCCCCC
Q 005958          392 LDALRHPFLCGPRW  405 (667)
Q Consensus       392 ~elL~HPwf~~~~~  405 (667)
                      +++++||||....|
T Consensus       257 ~~i~~hp~~~~~~~  270 (329)
T cd05588         257 RDIKSHPFFRNIDW  270 (329)
T ss_pred             HHHhcCCCCCCCCH
Confidence            89999999988765

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=3.9e-41  Score=359.00  Aligned_cols=241  Identities=21%  Similarity=0.254  Sum_probs=196.4

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEE
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVS  166 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~  166 (667)
                      +.||+|+||    .||+|.+..     +++.||+|++....     ......+|+++++.+      .||||+++++++.
T Consensus         1 ~~lG~G~~g----~V~~~~~~~-----~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~------~hp~i~~~~~~~~   65 (325)
T cd05594           1 KLLGKGTFG----KVILVKEKA-----TGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNS------RHPFLTALKYSFQ   65 (325)
T ss_pred             CeeeeCCCE----EEEEEEECC-----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhC------CCCCCCceEEEEE
Confidence            469999999    999999987     89999999997532     223457788889888      4999999999998


Q ss_pred             ecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHH
Q 005958          167 SHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNY  246 (667)
Q Consensus       167 ~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~y  246 (667)
                           ..+.+|+||| |+++|+|.+++...+         .+++                    ..++.++.||+.||.|
T Consensus        66 -----~~~~~~lv~E-~~~~~~L~~~l~~~~---------~l~~--------------------~~~~~~~~qi~~aL~~  110 (325)
T cd05594          66 -----THDRLCFVME-YANGGELFFHLSRER---------VFSE--------------------DRARFYGAEIVSALDY  110 (325)
T ss_pred             -----cCCEEEEEEe-CCCCCcHHHHHHhcC---------CCCH--------------------HHHHHHHHHHHHHHHH
Confidence                 7789999999 999999999987654         4554                    4567899999999999


Q ss_pred             HHH-CCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHHHHHH
Q 005958          247 LHS-HGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAK  316 (667)
Q Consensus       247 LHs-~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLye  316 (667)
                      ||+ +||+||||||+|||++. ++.+||+|||++.....         +.+.|+|||++. ...++.++|||||||++||
T Consensus       111 lH~~~~ivHrDikp~NIll~~-~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwslG~il~e  188 (325)
T cd05594         111 LHSEKNVVYRDLKLENLMLDK-DGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLE-DNDYGRAVDWWGLGVVMYE  188 (325)
T ss_pred             HHhcCCEEecCCCCCeEEECC-CCCEEEecCCCCeecCCCCcccccccCCcccCCHHHHc-cCCCCCccccccccceeee
Confidence            998 79999999999999998 89999999999875321         336899999654 4568999999999999999


Q ss_pred             HHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC-----CH
Q 005958          317 MVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI-----SC  391 (667)
Q Consensus       317 mltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp-----Sa  391 (667)
                      |++|+.||..            .......+.+   ...       .......+++++.+||.+||+.||++|+     ++
T Consensus       189 l~tG~~Pf~~------------~~~~~~~~~i---~~~-------~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~  246 (325)
T cd05594         189 MMCGRLPFYN------------QDHEKLFELI---LME-------EIRFPRTLSPEAKSLLSGLLKKDPKQRLGGGPDDA  246 (325)
T ss_pred             eccCCCCCCC------------CCHHHHHHHH---hcC-------CCCCCCCCCHHHHHHHHHHhhcCHHHhCCCCCCCH
Confidence            9999999852            2222222221   111       1223346789999999999999999997     99


Q ss_pred             HHHHcCCCCCCCCCC
Q 005958          392 LDALRHPFLCGPRWR  406 (667)
Q Consensus       392 ~elL~HPwf~~~~~~  406 (667)
                      .++++||||.+..|.
T Consensus       247 ~~il~h~~~~~~~~~  261 (325)
T cd05594         247 KEIMQHKFFAGIVWQ  261 (325)
T ss_pred             HHHhcCCCcCCCCHH
Confidence            999999999987653

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=9.9e-41  Score=354.89  Aligned_cols=241  Identities=21%  Similarity=0.282  Sum_probs=194.2

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEE
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVS  166 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~  166 (667)
                      +.||+|+||    +||+|++..     +++.||||+++...     ..+....|..++..+.     +||||+++++++.
T Consensus         1 ~~lG~G~~g----~Vy~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~-----~hp~i~~~~~~~~   66 (316)
T cd05592           1 KVLGKGSFG----KVMLAELKG-----TNEFFAIKALKKDVVLEDDDVECTMVERRVLALAW-----EHPFLTHLFCTFQ   66 (316)
T ss_pred             CeeeeCCCe----EEEEEEECC-----CCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhcc-----CCCCccceeeEEE
Confidence            479999999    999999987     78999999997532     2233466777777654     6999999999998


Q ss_pred             ecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHH
Q 005958          167 SHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNY  246 (667)
Q Consensus       167 ~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~y  246 (667)
                           ..+.+|+||| |+++|+|.+++....         .+++                    ..++.++.||+.||.|
T Consensus        67 -----~~~~~~lv~e-~~~gg~L~~~~~~~~---------~~~~--------------------~~~~~~~~qi~~al~~  111 (316)
T cd05592          67 -----TKEHLFFVME-YLNGGDLMFHIQSSG---------RFDE--------------------ARARFYAAEIICGLQF  111 (316)
T ss_pred             -----cCCEEEEEEc-CCCCCcHHHHHHHcC---------CCCH--------------------HHHHHHHHHHHHHHHH
Confidence                 7789999999 999999999998754         4554                    4567899999999999


Q ss_pred             HHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHHHHHHH
Q 005958          247 LHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKM  317 (667)
Q Consensus       247 LHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyem  317 (667)
                      ||++||+||||||+|||++. ++.+||+|||+|.....         +.+.|+|||.+. ...++.++|||||||++|||
T Consensus       112 LH~~~ivH~dlkp~Nill~~-~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DvwslG~il~el  189 (316)
T cd05592         112 LHKKGIIYRDLKLDNVLLDK-DGHIKIADFGMCKENMNGEGKASTFCGTPDYIAPEILK-GQKYNESVDWWSFGVLLYEM  189 (316)
T ss_pred             HHHCCEEeCCCCHHHeEECC-CCCEEEccCcCCeECCCCCCccccccCCccccCHHHHc-CCCCCCcccchhHHHHHHHH
Confidence            99999999999999999998 89999999999975422         236899999654 45689999999999999999


Q ss_pred             HhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH-HHHHc
Q 005958          318 VLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC-LDALR  396 (667)
Q Consensus       318 ltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa-~elL~  396 (667)
                      ++|+.||..            .+...+...+   ....       ......++.++.+||.+||+.||++||++ .++++
T Consensus       190 l~G~~Pf~~------------~~~~~~~~~i---~~~~-------~~~~~~~~~~~~~ll~~~l~~~P~~R~~~~~~l~~  247 (316)
T cd05592         190 LIGQSPFHG------------EDEDELFDSI---LNDR-------PHFPRWISKEAKDCLSKLFERDPTKRLGVDGDIRQ  247 (316)
T ss_pred             HhCCCCCCC------------CCHHHHHHHH---HcCC-------CCCCCCCCHHHHHHHHHHccCCHHHcCCChHHHHc
Confidence            999999852            2222222221   1111       11234578899999999999999999986 58899


Q ss_pred             CCCCCCCCC
Q 005958          397 HPFLCGPRW  405 (667)
Q Consensus       397 HPwf~~~~~  405 (667)
                      ||||....|
T Consensus       248 h~~~~~~~~  256 (316)
T cd05592         248 HPFFRGIDW  256 (316)
T ss_pred             CcccCCCCH
Confidence            999998765

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=5.8e-42  Score=321.93  Aligned_cols=268  Identities=23%  Similarity=0.325  Sum_probs=223.0

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh----HHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA----QRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~----~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      +.+|...++||+|+||    +||+|++..     +++.||+|.++...+    .....|||-+|+.++      |.|||+
T Consensus         1 m~~ydkmekigegtyg----tvfkarn~~-----t~eivalkrvrlddddegvpssalreicllkelk------hknivr   65 (292)
T KOG0662|consen    1 MQKYDKMEKIGEGTYG----TVFKARNRE-----THEIVALKRVRLDDDDEGVPSSALREICLLKELK------HKNIVR   65 (292)
T ss_pred             CcchHHHHhhcCCcce----eeEecccCC-----ccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhh------hcceee
Confidence            3568888999999999    999999998     899999999986443    356799999999996      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      ++++..     .+..+.+|+| ||+. +|..+....+        ..++                    +..++.++.|+
T Consensus        66 l~dvlh-----sdkkltlvfe-~cdq-dlkkyfdsln--------g~~d--------------------~~~~rsfmlql  110 (292)
T KOG0662|consen   66 LHDVLH-----SDKKLTLVFE-FCDQ-DLKKYFDSLN--------GDLD--------------------PEIVRSFMLQL  110 (292)
T ss_pred             hhhhhc-----cCceeEEeHH-HhhH-HHHHHHHhcC--------CcCC--------------------HHHHHHHHHHH
Confidence            999998     7889999999 9999 9999987643        1333                    35789999999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC---------CCCCCcccccCCCCCCchhhHHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG---------PNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~---------~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      ++||.|+|++++.||||||+|+||+. +|.+||+|||+|+.++.+-         ..|++|.++++..-|++..|+||.|
T Consensus       111 lrgl~fchshnvlhrdlkpqnllin~-ngelkladfglarafgipvrcysaevvtlwyrppdvlfgakly~tsidmwsag  189 (292)
T KOG0662|consen  111 LRGLGFCHSHNVLHRDLKPQNLLINR-NGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAG  189 (292)
T ss_pred             HhhhhhhhhhhhhhccCCcceEEecc-CCcEEecccchhhhcCCceEeeeceeeeeeccCcceeeeeehhccchHhhhcc
Confidence            99999999999999999999999999 9999999999999887765         4578999999999999999999999


Q ss_pred             HHHHHHHh-CCCCChh---hhhhhhhhhccCCChhHHHHHHHHHhccCCCCC-----CCCcccccCCCHHHHHHHHHhhh
Q 005958          312 FMMAKMVL-RELMDPL---IFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSG-----NTGFQILDRNWGAGWNLLSLLLA  382 (667)
Q Consensus       312 viLyemlt-G~~PF~~---~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~s~e~~dLI~~~L~  382 (667)
                      ||+.|+.. |+|.|++   .+|+.++|...|.+.++....+.. ++...+..     ..-.++.++.+...+||++++|.
T Consensus       190 cifaelanagrplfpg~dvddqlkrif~~lg~p~ed~wps~t~-lpdyk~yp~ypattswsqivp~lns~grdllqkll~  268 (292)
T KOG0662|consen  190 CIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEDQWPSMTK-LPDYKPYPIYPATTSWSQIVPKLNSTGRDLLQKLLK  268 (292)
T ss_pred             hHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccccCCcccc-CCCCcccCCccccchHHHHhhhhcchhHHHHHHHhc
Confidence            99999996 8999996   468888998899887643322211 11111100     00113445667788999999999


Q ss_pred             cCcCCCCCHHHHHcCCCCCCCC
Q 005958          383 TKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       383 ~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      -+|.+|++|+++|+||||.+..
T Consensus       269 cnp~qrisaeaalqhpyf~d~s  290 (292)
T KOG0662|consen  269 CNPAQRISAEAALQHPYFSDFS  290 (292)
T ss_pred             cCcccccCHHHHhcCccccccC
Confidence            9999999999999999998753

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.7e-41  Score=360.01  Aligned_cols=259  Identities=21%  Similarity=0.308  Sum_probs=203.8

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCC
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      ..+.-..|+++++||.|+.+    .||++....      .+.||+|++....    ......+||.+|.+|+     +|.
T Consensus       356 i~Vkg~~Yeilk~iG~GGSS----kV~kV~~s~------~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLk-----g~~  420 (677)
T KOG0596|consen  356 IKVKGREYEILKQIGSGGSS----KVFKVLNSD------KQIYALKKVVLLEADNQTLDGYRNEIALLNKLK-----GHD  420 (677)
T ss_pred             EEECcchhhHHHhhcCCCcc----eeeeeecCC------CcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhc-----CCc
Confidence            44556789999999999999    999999875      5778888766432    2244589999999999     899


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      +||++++|-.     .++++||||| |-+. ||.++|++.....                            +...++.|
T Consensus       421 ~IIqL~DYEv-----~d~~lYmvmE-~Gd~-DL~kiL~k~~~~~----------------------------~~~~lk~y  465 (677)
T KOG0596|consen  421 KIIQLYDYEV-----TDGYLYMVME-CGDI-DLNKILKKKKSID----------------------------PDWFLKFY  465 (677)
T ss_pred             eEEEEeeeec-----cCceEEEEee-cccc-cHHHHHHhccCCC----------------------------chHHHHHH
Confidence            9999999998     7899999999 6666 9999999865211                            11368999


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-----------CCCCCcccccCCC------
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-----------PNNSSPDSNMDRR------  299 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-----------~~Y~APE~l~~~~------  299 (667)
                      ..||+.|+.++|.+||||.||||.|+|+-.  |.+||+|||+|..+..+.           ..||+||.+....      
T Consensus       466 wkqML~aV~~IH~~gIVHSDLKPANFLlVk--G~LKLIDFGIA~aI~~DTTsI~kdsQvGT~NYMsPEAl~~~~s~~~~~  543 (677)
T KOG0596|consen  466 WKQMLLAVKTIHQHGIVHSDLKPANFLLVK--GRLKLIDFGIANAIQPDTTSIVKDSQVGTVNYMSPEALTDMSSSRENG  543 (677)
T ss_pred             HHHHHHHHHHHHHhceeecCCCcccEEEEe--eeEEeeeechhcccCccccceeeccccCcccccCHHHHhhccccccCC
Confidence            999999999999999999999999999994  999999999998776654           7899999765221      


Q ss_pred             ----CCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHH
Q 005958          300 ----QMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWN  375 (667)
Q Consensus       300 ----~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~d  375 (667)
                          ..+.++||||||||||+|++|++||.+....+..+.              .+.   .+.....++..+..+ ++++
T Consensus       544 ~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~n~~aKl~--------------aI~---~P~~~Iefp~~~~~~-~li~  605 (677)
T KOG0596|consen  544 KSKIKISRKSDVWSLGCILYQMVYGKTPFGQIINQIAKLH--------------AIT---DPNHEIEFPDIPEND-ELID  605 (677)
T ss_pred             CcceeecCccchhhhhhHHHHHHhcCCchHHHHHHHHHHH--------------hhc---CCCccccccCCCCch-HHHH
Confidence                246799999999999999999999975432222111              111   111222333333333 3999


Q ss_pred             HHHHhhhcCcCCCCCHHHHHcCCCCCCCCCCCCC
Q 005958          376 LLSLLLATKPSKRISCLDALRHPFLCGPRWRVDP  409 (667)
Q Consensus       376 LI~~~L~~DP~kRpSa~elL~HPwf~~~~~~~~~  409 (667)
                      +++.||..||++|||+.++|+|||++...-+..+
T Consensus       606 ~mK~CL~rdPkkR~si~eLLqhpFl~~~~i~~~~  639 (677)
T KOG0596|consen  606 VMKCCLARDPKKRWSIPELLQHPFLQIQPIPVEQ  639 (677)
T ss_pred             HHHHHHhcCcccCCCcHHHhcCcccccccccchH
Confidence            9999999999999999999999999986644433

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=1.1e-40  Score=362.73  Aligned_cols=254  Identities=15%  Similarity=0.228  Sum_probs=202.7

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCC
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      ....++|++.+.||+|+||    .||+|++..     +++.||+|++.+..     ....+.+|+.+++.+      +||
T Consensus        39 ~~~~~~y~~~~~lG~G~fg----~Vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~------~hp  103 (370)
T cd05621          39 QMKAEDYDVVKVIGRGAFG----EVQLVRHKS-----SQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFA------NSP  103 (370)
T ss_pred             CCCHHHCeEEEEEEecCCe----EEEEEEECC-----CCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhC------CCC
Confidence            3445889999999999999    999999998     79999999997522     223457899999988      599


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++.     +++.+|+||| |+++|+|.+++...          .+++                    ..++.+
T Consensus       104 ~iv~~~~~~~-----~~~~~~lv~E-y~~gg~L~~~l~~~----------~~~~--------------------~~~~~~  147 (370)
T cd05621         104 WVVQLFCAFQ-----DDKYLYMVME-YMPGGDLVNLMSNY----------DVPE--------------------KWAKFY  147 (370)
T ss_pred             CEeeEEEEEE-----cCCEEEEEEc-CCCCCcHHHHHHhc----------CCCH--------------------HHHHHH
Confidence            9999999998     7889999999 99999999999753          3444                    456789


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC----------CCCCCCCcccccCC---CCCCc
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE----------DGPNNSSPDSNMDR---RQMMI  303 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~----------~~~~Y~APE~l~~~---~~ys~  303 (667)
                      +.||+.||+|||++||+||||||+|||++. ++.+||+|||+|.....          +.+.|+|||++...   ..++.
T Consensus       148 ~~qil~aL~~LH~~~IvHrDLKp~NILl~~-~~~~kL~DFG~a~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~  226 (370)
T cd05621         148 TAEVVLALDAIHSMGLIHRDVKPDNMLLDK-HGHLKLADFGTCMKMDETGMVRCDTAVGTPDYISPEVLKSQGGDGYYGR  226 (370)
T ss_pred             HHHHHHHHHHHHHCCeEecCCCHHHEEECC-CCCEEEEecccceecccCCceecccCCCCcccCCHHHHhccCCCCCCCc
Confidence            999999999999999999999999999998 89999999999976532          34789999976543   24789


Q ss_pred             hhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhc
Q 005958          304 AFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLAT  383 (667)
Q Consensus       304 ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~  383 (667)
                      ++||||+||++|||++|++||...            ....   ....+.....   ...++....++..+++||.+||..
T Consensus       227 ~~DiwSlG~ilyell~G~~Pf~~~------------~~~~---~~~~i~~~~~---~~~~p~~~~~s~~~~~li~~~L~~  288 (370)
T cd05621         227 ECDWWSVGVFLFEMLVGDTPFYAD------------SLVG---TYSKIMDHKN---SLNFPEDVEISKHAKNLICAFLTD  288 (370)
T ss_pred             ccCEEeehHHHHHHHhCCCCCCCC------------CHHH---HHHHHHhCCc---ccCCCCcccCCHHHHHHHHHHccC
Confidence            999999999999999999999521            1111   1112221110   011222235688999999999986


Q ss_pred             CcCC--CCCHHHHHcCCCCCCCCC
Q 005958          384 KPSK--RISCLDALRHPFLCGPRW  405 (667)
Q Consensus       384 DP~k--RpSa~elL~HPwf~~~~~  405 (667)
                      +|.+  |++++|+++||||+...|
T Consensus       289 ~~~r~~R~~~~e~l~hp~~~~~~~  312 (370)
T cd05621         289 REVRLGRNGVEEIKQHPFFKNDQW  312 (370)
T ss_pred             chhccCCCCHHHHhcCcccCCCCc
Confidence            5544  899999999999998654

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=1.7e-40  Score=353.17  Aligned_cols=242  Identities=19%  Similarity=0.251  Sum_probs=195.5

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEE
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVS  166 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~  166 (667)
                      +.||+|+||    +||+|++..     +++.||||+++...     .......|..++..+.     +||||+++++++.
T Consensus         1 ~~lG~G~~g----~Vy~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~-----~hp~iv~~~~~~~   66 (316)
T cd05619           1 KMLGKGSFG----KVFLAELKG-----TNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAW-----EHPFLTHLYCTFQ   66 (316)
T ss_pred             CeeeeCCCE----EEEEEEECC-----CCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhcc-----CCCcCcceEEEEE
Confidence            479999999    999999997     78999999997632     2234567888887654     6999999999998


Q ss_pred             ecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHH
Q 005958          167 SHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNY  246 (667)
Q Consensus       167 ~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~y  246 (667)
                           +.+.+|+||| |+++|+|.+++....         .+++                    ..+..++.||+.||.|
T Consensus        67 -----~~~~~~lv~e-y~~~g~L~~~l~~~~---------~~~~--------------------~~~~~~~~qi~~al~~  111 (316)
T cd05619          67 -----TKENLFFVME-YLNGGDLMFHIQSCH---------KFDL--------------------PRATFYAAEIICGLQF  111 (316)
T ss_pred             -----eCCEEEEEEe-CCCCCcHHHHHHHcC---------CCCH--------------------HHHHHHHHHHHHHHHH
Confidence                 7789999999 999999999998643         3444                    4567799999999999


Q ss_pred             HHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHHHHHHH
Q 005958          247 LHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKM  317 (667)
Q Consensus       247 LHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyem  317 (667)
                      ||++||+||||||+|||++. ++.+||+|||++.....         +.+.|+|||++. ...|+.++||||+||++|||
T Consensus       112 LH~~~ivHrdikp~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DvwslG~il~el  189 (316)
T cd05619         112 LHSKGIVYRDLKLDNILLDT-DGHIKIADFGMCKENMLGDAKTCTFCGTPDYIAPEILL-GQKYNTSVDWWSFGVLLYEM  189 (316)
T ss_pred             HHhCCeEeCCCCHHHEEECC-CCCEEEccCCcceECCCCCCceeeecCCccccCHHHHc-CCCCCchhhhhhHHHHHHHH
Confidence            99999999999999999998 89999999999875321         236799999654 45689999999999999999


Q ss_pred             HhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHH-HHHc
Q 005958          318 VLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCL-DALR  396 (667)
Q Consensus       318 ltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~-elL~  396 (667)
                      ++|..||..            .+...+.+.+..   ..       ......++.++++||.+||+.||++||++. ++++
T Consensus       190 ~~G~~pf~~------------~~~~~~~~~i~~---~~-------~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~~  247 (316)
T cd05619         190 LIGQSPFHG------------HDEEELFQSIRM---DN-------PCYPRWLTREAKDILVKLFVREPERRLGVKGDIRQ  247 (316)
T ss_pred             HhCCCCCCC------------CCHHHHHHHHHh---CC-------CCCCccCCHHHHHHHHHHhccCHhhcCCChHHHHc
Confidence            999999852            222222222211   10       112234678999999999999999999996 8999


Q ss_pred             CCCCCCCCCC
Q 005958          397 HPFLCGPRWR  406 (667)
Q Consensus       397 HPwf~~~~~~  406 (667)
                      ||||....|.
T Consensus       248 h~~~~~~~~~  257 (316)
T cd05619         248 HPFFREIDWS  257 (316)
T ss_pred             CcccCCCCHH
Confidence            9999998763

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=100.00  E-value=2.8e-40  Score=352.54  Aligned_cols=246  Identities=20%  Similarity=0.231  Sum_probs=201.1

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      +|++.+.||+|+||    .||+|.++.     +++.||+|++.+..     ..+....|+.++..+.     .|++|+++
T Consensus         1 ~f~~~~~lg~G~~g----~Vy~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~-----~~~~i~~~   66 (323)
T cd05615           1 DFNFLMVLGKGSFG----KVMLAERKG-----TDELYAIKILKKDVVIQDDDVECTMVEKRVLALQD-----KPPFLTQL   66 (323)
T ss_pred             CceEEEEEEecCCe----EEEEEEECC-----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcc-----CCCchhhe
Confidence            47899999999999    999999988     79999999997532     2234577888888886     57889999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     ..+.+|+||| |+++|+|.+++...+         .+++                    ..++.++.||+
T Consensus        67 ~~~~~-----~~~~~~lv~E-y~~~g~L~~~i~~~~---------~l~~--------------------~~~~~i~~qi~  111 (323)
T cd05615          67 HSCFQ-----TVDRLYFVME-YVNGGDLMYHIQQVG---------KFKE--------------------PQAVFYAAEIS  111 (323)
T ss_pred             eeEEe-----cCCEEEEEEc-CCCCCcHHHHHHHcC---------CCCH--------------------HHHHHHHHHHH
Confidence            99998     7789999999 999999999998754         4555                    45678999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      .||.|||++||+||||||+|||++. ++.+||+|||++.....         +.+.|+|||++. ...++.++||||+||
T Consensus       112 ~al~~lH~~~ivHrDikp~Nill~~-~~~ikL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwslGv  189 (323)
T cd05615         112 VGLFFLHRRGIIYRDLKLDNVMLDS-EGHIKIADFGMCKEHMVDGVTTRTFCGTPDYIAPEIIA-YQPYGKSVDWWAYGV  189 (323)
T ss_pred             HHHHHHHHCCeeccCCCHHHeEECC-CCCEEEeccccccccCCCCccccCccCCccccCHHHHc-CCCCCCccchhhhHH
Confidence            9999999999999999999999998 89999999999875321         236799999554 556899999999999


Q ss_pred             HHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC--
Q 005958          313 MMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS--  390 (667)
Q Consensus       313 iLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS--  390 (667)
                      ++|||++|++||..            .......+.   +....       ...+...+.++++|+.+||+.||.+|++  
T Consensus       190 il~elltG~~pf~~------------~~~~~~~~~---i~~~~-------~~~p~~~~~~~~~li~~~l~~~p~~R~~~~  247 (323)
T cd05615         190 LLYEMLAGQPPFDG------------EDEDELFQS---IMEHN-------VSYPKSLSKEAVSICKGLMTKHPSKRLGCG  247 (323)
T ss_pred             HHHHHHhCCCCCCC------------CCHHHHHHH---HHhCC-------CCCCccCCHHHHHHHHHHcccCHhhCCCCC
Confidence            99999999999852            222222222   22111       1233457889999999999999999997  


Q ss_pred             ---HHHHHcCCCCCCCCC
Q 005958          391 ---CLDALRHPFLCGPRW  405 (667)
Q Consensus       391 ---a~elL~HPwf~~~~~  405 (667)
                         .+++++||||....|
T Consensus       248 ~~~~~~i~~h~~f~~~~~  265 (323)
T cd05615         248 PEGERDIREHAFFRRIDW  265 (323)
T ss_pred             CCCHHHHhcCcccCCCCH
Confidence               579999999998775

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.3e-41  Score=365.20  Aligned_cols=249  Identities=20%  Similarity=0.303  Sum_probs=211.2

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      .+++|+.++++|+|+||    .+++++++.     ..+.||+|.+...    ...+....|+.++++++      |||||
T Consensus         2 ~m~~Ye~~~~iG~GafG----~a~lvrhk~-----~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~------hP~iv   66 (426)
T KOG0589|consen    2 EMDNYEVLRQVGRGAFG----SALLVRHKS-----DDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLL------HPNIV   66 (426)
T ss_pred             ccchhhhhhhcCccccc----hhhhhhhcc-----CCceEEEEEEeccccCchhhHHHHHHHHHHHhcc------CCCee
Confidence            46899999999999999    999999998     7889999999853    23346789999999995      99999


Q ss_pred             EEEEEEEecccCCCCe-EEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSL-FTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~-~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      .+++.|.     .++. ++|||+ ||+||+|.+.|++.+       ...|+|++                    |..|+.
T Consensus        67 ~y~ds~~-----~~~~~l~Ivm~-Y~eGg~l~~~i~~~k-------~~~f~E~~--------------------i~~~~~  113 (426)
T KOG0589|consen   67 EYKDSFE-----EDGQLLCIVME-YCEGGDLAQLIKEQK-------GVLFPEER--------------------ILKWFV  113 (426)
T ss_pred             eeccchh-----cCCceEEEEEe-ecCCCCHHHHHHHHh-------hccccHHH--------------------HHHHHH
Confidence            9999998     5555 999999 999999999998764       24666654                    778999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC---------CCCCCcccccCCCCCCchhhHHH
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG---------PNNSSPDSNMDRRQMMIAFDMRC  309 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~---------~~Y~APE~l~~~~~ys~ksDIWS  309 (667)
                      |++.|++|||+++|+|||||+.|||++. ++.|||+|||+|+......         |+||.|| ++.+.+|+.|+||||
T Consensus       114 Q~~~av~ylH~~~iLHRDlK~~Nifltk-~~~VkLgDfGlaK~l~~~~~~a~tvvGTp~YmcPE-il~d~pYn~KSDiWs  191 (426)
T KOG0589|consen  114 QILLAVNYLHENRVLHRDLKCANIFLTK-DKKVKLGDFGLAKILNPEDSLASTVVGTPYYMCPE-ILSDIPYNEKSDIWS  191 (426)
T ss_pred             HHHHHHHHHHhhhhhcccchhhhhhccc-cCceeecchhhhhhcCCchhhhheecCCCcccCHH-HhCCCCCCccCcchh
Confidence            9999999999999999999999999999 7888999999999877653         8999999 667778999999999


Q ss_pred             HHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          310 VGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       310 LGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      |||++|||++-+++|.            +.+..   ..+.++....      ..+....++.+++.||+.||..+|+.||
T Consensus       192 LGC~~yEm~~lk~aF~------------a~~m~---~Li~ki~~~~------~~Plp~~ys~el~~lv~~~l~~~P~~RP  250 (426)
T KOG0589|consen  192 LGCCLYEMCTLKPAFK------------ASNMS---ELILKINRGL------YSPLPSMYSSELRSLVKSMLRKNPEHRP  250 (426)
T ss_pred             hcchHHHHHhcccccC------------ccchH---HHHHHHhhcc------CCCCCccccHHHHHHHHHHhhcCCccCC
Confidence            9999999999999984            33333   3333333322      1244567889999999999999999999


Q ss_pred             CHHHHHcCCCCCCC
Q 005958          390 SCLDALRHPFLCGP  403 (667)
Q Consensus       390 Sa~elL~HPwf~~~  403 (667)
                      ++.++|.+|.+...
T Consensus       251 sa~~LL~~P~l~~~  264 (426)
T KOG0589|consen  251 SALELLRRPHLLRY  264 (426)
T ss_pred             CHHHHhhChhhhhH
Confidence            99999999887643

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.1e-40  Score=357.83  Aligned_cols=272  Identities=21%  Similarity=0.278  Sum_probs=205.6

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      .++|++++.||.|+||    +||+|.+..     +++.||||++....    ..+...+|+.+|+.++      ||||++
T Consensus        14 ~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~------h~~iv~   78 (343)
T cd07878          14 PERYQNLTPVGSGAYG----SVCSAYDTR-----LRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMK------HENVIG   78 (343)
T ss_pred             hhhhhhheecccCCCe----EEEEEEECC-----CCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcC------CCchhh
Confidence            4789999999999999    999999987     78999999987532    2244678999999995      999999


Q ss_pred             EEEEEEeccc-CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          161 VHGYVSSHTT-SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       161 l~~~~~~~~~-~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      +++++..... ......|++|| ++++ +|.+++...          .+++                    ..++.++.|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~-~~~~-~l~~~~~~~----------~l~~--------------------~~~~~i~~q  126 (343)
T cd07878          79 LLDVFTPATSIENFNEVYLVTN-LMGA-DLNNIVKCQ----------KLSD--------------------EHVQFLIYQ  126 (343)
T ss_pred             hhhhhcccccccccCcEEEEee-cCCC-CHHHHHhcC----------CCCH--------------------HHHHHHHHH
Confidence            9998863211 12356899999 8865 999888642          3554                    457889999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      |+.||.|||++||+||||||+|||++. ++.+||+|||++......      .+.|+|||++.+...++.++|||||||+
T Consensus       127 i~~aL~~LH~~~ivHrdikp~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~i  205 (343)
T cd07878         127 LLRGLKYIHSAGIIHRDLKPSNVAVNE-DCELRILDFGLARQADDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCI  205 (343)
T ss_pred             HHHHHHHHHHCCeecccCChhhEEECC-CCCEEEcCCccceecCCCcCCccccccccCchHhcCCccCCchhhhHhHHHH
Confidence            999999999999999999999999998 899999999999865443      3679999987776779999999999999


Q ss_pred             HHHHHhCCCCChhh---hhhhhhhhccCCChhHHHHHH-----HHHhccCCCCCCCC-cccccCCCHHHHHHHHHhhhcC
Q 005958          314 MAKMVLRELMDPLI---FTKFKSFLTKGIDPSCLREFL-----LQVLNRNSSSGNTG-FQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       314 LyemltG~~PF~~~---~~~~~~~~~~g~~~~~l~~~~-----~~~~~~~~~~~~~~-~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      +|+|++|++||+..   .....+....+.+.......+     .............. .......++.+.+||.+||++|
T Consensus       206 l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~d  285 (343)
T cd07878         206 MAELLKGKALFPGNDYIDQLKRIMEVVGTPSPEVLKKISSEHARKYIQSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLD  285 (343)
T ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhcchhhHHHHhhccccccchhHHHhccCCCHHHHHHHHHHcCCC
Confidence            99999999999742   222222223333332221111     00011000000000 1122346778999999999999


Q ss_pred             cCCCCCHHHHHcCCCCCCCC
Q 005958          385 PSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       385 P~kRpSa~elL~HPwf~~~~  404 (667)
                      |++|||+.|+|+||||....
T Consensus       286 p~~R~s~~ell~hp~~~~~~  305 (343)
T cd07878         286 SDKRISASEALAHPYFSQYH  305 (343)
T ss_pred             hhhCCCHHHHhcCcchhccC
Confidence            99999999999999998755

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=2.1e-40  Score=352.46  Aligned_cols=241  Identities=21%  Similarity=0.290  Sum_probs=197.2

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEE
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVS  166 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~  166 (667)
                      +.||+|+||    +||+|.+..     +++.||||++++..     ......+|+.+++.+.     +||||+++++++.
T Consensus         1 ~~lG~G~~g----~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~-----~h~~i~~~~~~~~   66 (318)
T cd05570           1 KVLGKGSFG----KVLLAELKG-----TDELYAVKVLKKDVILQDDDVECTMTEKRVLALAG-----KHPFLTQLHSCFQ   66 (318)
T ss_pred             CeeeeCCCe----EEEEEEECC-----CCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhcc-----CCCCccceeeEEE
Confidence            479999999    999999987     78999999998632     2234578889998885     6999999999998


Q ss_pred             ecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHH
Q 005958          167 SHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNY  246 (667)
Q Consensus       167 ~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~y  246 (667)
                           ..+.+|+||| |+++|+|.+++.+.+         .+++                    ..+..++.||+.||.|
T Consensus        67 -----~~~~~~lv~e-~~~~~~L~~~~~~~~---------~l~~--------------------~~~~~~~~qi~~~l~~  111 (318)
T cd05570          67 -----TKDRLFFVME-YVNGGDLMFHIQRSG---------RFDE--------------------PRARFYAAEIVLGLQF  111 (318)
T ss_pred             -----cCCEEEEEEc-CCCCCCHHHHHHHcC---------CCCH--------------------HHHHHHHHHHHHHHHH
Confidence                 7789999999 999999999988754         4554                    4567899999999999


Q ss_pred             HHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHHHHHHH
Q 005958          247 LHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKM  317 (667)
Q Consensus       247 LHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyem  317 (667)
                      ||++||+||||||+|||++. ++.+||+|||++.....         +.+.|+|||++. ...++.++|||||||++|+|
T Consensus       112 LH~~~ivH~dlkp~Nill~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~-~~~~~~~~DiwslGvil~~l  189 (318)
T cd05570         112 LHERGIIYRDLKLDNVLLDS-EGHIKIADFGMCKEGILGGVTTSTFCGTPDYIAPEILS-YQPYGPAVDWWALGVLLYEM  189 (318)
T ss_pred             HHhCCeEccCCCHHHeEECC-CCcEEecccCCCeecCcCCCcccceecCccccCHHHhc-CCCCCcchhhhhHHHHHHHH
Confidence            99999999999999999998 89999999999864321         236799999654 45689999999999999999


Q ss_pred             HhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH-----H
Q 005958          318 VLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC-----L  392 (667)
Q Consensus       318 ltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa-----~  392 (667)
                      ++|+.||..            .........   +....       ......+++++.+||.+||+.||++||++     .
T Consensus       190 ~~G~~pf~~------------~~~~~~~~~---i~~~~-------~~~~~~~~~~~~~li~~~l~~dP~~R~s~~~~~~~  247 (318)
T cd05570         190 LAGQSPFEG------------DDEDELFQS---ILEDE-------VRYPRWLSKEAKSILKSFLTKNPEKRLGCLPTGEQ  247 (318)
T ss_pred             hhCCCCCCC------------CCHHHHHHH---HHcCC-------CCCCCcCCHHHHHHHHHHccCCHHHcCCCCCCCHH
Confidence            999999852            222222221   11111       12234578899999999999999999999     9


Q ss_pred             HHHcCCCCCCCCC
Q 005958          393 DALRHPFLCGPRW  405 (667)
Q Consensus       393 elL~HPwf~~~~~  405 (667)
                      ++++||||....|
T Consensus       248 ~ll~~~~~~~~~~  260 (318)
T cd05570         248 DIKGHPFFREIDW  260 (318)
T ss_pred             HHhcCCCcCCCCH
Confidence            9999999998775

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=100.00  E-value=2.5e-40  Score=356.84  Aligned_cols=270  Identities=20%  Similarity=0.245  Sum_probs=201.7

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      ..++|++.+.||+|+||    .||+|.+..     +++.||||++...    .......+|+.+++.++      ||||+
T Consensus        15 ~~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~------h~niv   79 (355)
T cd07874          15 VLKRYQNLKPIGSGAQG----IVCAAYDAV-----LDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVN------HKNII   79 (355)
T ss_pred             hhhceeEEEEeeecCCE----EEEEEEecC-----CCceEEEEEeCCcccChHHHHHHHHHHHHHHHhC------CCchh
Confidence            45899999999999999    999999987     7899999998752    22345678999999994      99999


Q ss_pred             EEEEEEEeccc-CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          160 QVHGYVSSHTT-SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       160 ~l~~~~~~~~~-~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      ++++++..... ......|+||| |+++ +|.+.+..           .+++                    ..++.++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~lv~e-~~~~-~l~~~~~~-----------~l~~--------------------~~~~~~~~  126 (355)
T cd07874          80 SLLNVFTPQKSLEEFQDVYLVME-LMDA-NLCQVIQM-----------ELDH--------------------ERMSYLLY  126 (355)
T ss_pred             ceeeeeeccccccccceeEEEhh-hhcc-cHHHHHhh-----------cCCH--------------------HHHHHHHH
Confidence            99999873321 13356899999 9987 88887754           2443                    35678999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHH
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      ||+.||.|||++||+||||||+|||++. ++.+||+|||+++.....        .+.|+|||++. ...|+.++|||||
T Consensus       127 qi~~aL~~LH~~givHrDikp~Nill~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~~Diwsl  204 (355)
T cd07874         127 QMLCGIKHLHSAGIIHRDLKPSNIVVKS-DCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVIL-GMGYKENVDIWSV  204 (355)
T ss_pred             HHHHHHHHHHhCCcccCCCChHHEEECC-CCCEEEeeCcccccCCCccccCCccccCCccCHHHHc-CCCCCchhhHHHH
Confidence            9999999999999999999999999998 899999999999765432        36799999654 4568999999999


Q ss_pred             HHHHHHHHhCCCCChhhh---hhhhhhhccCCChhHHHHH----HHHHhccCCCCCCC-------------CcccccCCC
Q 005958          311 GFMMAKMVLRELMDPLIF---TKFKSFLTKGIDPSCLREF----LLQVLNRNSSSGNT-------------GFQILDRNW  370 (667)
Q Consensus       311 GviLyemltG~~PF~~~~---~~~~~~~~~g~~~~~l~~~----~~~~~~~~~~~~~~-------------~~~~~~~~s  370 (667)
                      ||++|+|++|+.||.+..   .........+.+.......    ........+.....             ........+
T Consensus       205 G~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (355)
T cd07874         205 GCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKA  284 (355)
T ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhcHHHHHHHhcCCccccccchhhccccccccccccccccc
Confidence            999999999999997422   2222222233332221111    11111111110000             001122345


Q ss_pred             HHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCC
Q 005958          371 GAGWNLLSLLLATKPSKRISCLDALRHPFLCGP  403 (667)
Q Consensus       371 ~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~  403 (667)
                      .++++||.+||+.||++|||+.|+|+||||...
T Consensus       285 ~~~~~li~~mL~~dP~~Rps~~ell~hp~~~~~  317 (355)
T cd07874         285 SQARDLLSKMLVIDPAKRISVDEALQHPYINVW  317 (355)
T ss_pred             hHHHHHHHHHhcCCchhcCCHHHHhcCcchhcc
Confidence            789999999999999999999999999999753

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=1.6e-40  Score=355.43  Aligned_cols=249  Identities=19%  Similarity=0.282  Sum_probs=197.6

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEE
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVS  166 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~  166 (667)
                      +.||+|+||    .||+|++..     +++.||+|++++..     ....+.+|+.++.++.     +||||+++++++.
T Consensus         1 ~~lG~G~~g----~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~-----~hp~iv~~~~~~~   66 (329)
T cd05618           1 RVIGRGSYA----KVLLVRLKK-----TERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQAS-----NHPFLVGLHSCFQ   66 (329)
T ss_pred             CeeeeCCCe----EEEEEEECC-----CCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcC-----CCCcCCceeeEEE
Confidence            479999999    999999998     78999999997532     2234578888888875     6999999999998


Q ss_pred             ecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHH
Q 005958          167 SHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNY  246 (667)
Q Consensus       167 ~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~y  246 (667)
                           ..+.+|+||| |+++|+|..++...+         .+++                    ..++.++.||+.||.|
T Consensus        67 -----~~~~~~lv~E-~~~~~~L~~~~~~~~---------~l~~--------------------~~~~~i~~qi~~~l~~  111 (329)
T cd05618          67 -----TESRLFFVIE-YVNGGDLMFHMQRQR---------KLPE--------------------EHARFYSAEISLALNY  111 (329)
T ss_pred             -----eCCEEEEEEe-CCCCCCHHHHHHHcC---------CCCH--------------------HHHHHHHHHHHHHHHH
Confidence                 7789999999 999999999987654         4554                    4567899999999999


Q ss_pred             HHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHHHHHHH
Q 005958          247 LHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKM  317 (667)
Q Consensus       247 LHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyem  317 (667)
                      ||++||+||||||+|||++. ++.+||+|||+++....         +.+.|+|||++. ...++.++|||||||++|||
T Consensus       112 lH~~~ivH~Dikp~Nili~~-~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwslG~il~el  189 (329)
T cd05618         112 LHERGIIYRDLKLDNVLLDS-EGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILR-GEDYGFSVDWWALGVLMFEM  189 (329)
T ss_pred             HHHCCeeeCCCCHHHEEECC-CCCEEEeeCCccccccCCCCccccccCCccccCHHHHc-CCCCCCccceecccHHHHHH
Confidence            99999999999999999998 89999999999875321         236799999654 55689999999999999999


Q ss_pred             HhCCCCChhhhhhhhhhhccCCChhHHHHHHHH-HhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC------
Q 005958          318 VLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQ-VLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS------  390 (667)
Q Consensus       318 ltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS------  390 (667)
                      ++|+.||.....       ...+......++.. +...       ....+...+.++.+||.+||+.||++||+      
T Consensus       190 ~~g~~Pf~~~~~-------~~~~~~~~~~~~~~~i~~~-------~~~~p~~~~~~~~~ll~~~L~~dP~~R~~~~~~~~  255 (329)
T cd05618         190 MAGRSPFDIVGS-------SDNPDQNTEDYLFQVILEK-------QIRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTG  255 (329)
T ss_pred             hhCCCCCccCCC-------cCCcccccHHHHHHHHhcC-------CCCCCCCCCHHHHHHHHHHhcCCHHHcCCCCCCCC
Confidence            999999852110       01111111112111 2211       12234567889999999999999999998      


Q ss_pred             HHHHHcCCCCCCCCC
Q 005958          391 CLDALRHPFLCGPRW  405 (667)
Q Consensus       391 a~elL~HPwf~~~~~  405 (667)
                      ++++++||||....|
T Consensus       256 ~~~i~~hp~f~~~~~  270 (329)
T cd05618         256 FADIQGHPFFRNVDW  270 (329)
T ss_pred             HHHHhcCCCCCCCCH
Confidence            479999999998775

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=3.7e-40  Score=343.81  Aligned_cols=248  Identities=18%  Similarity=0.211  Sum_probs=196.0

Q ss_pred             eccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-----HHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEec
Q 005958           94 VSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-----QRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSH  168 (667)
Q Consensus        94 LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-----~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~  168 (667)
                      ||+|+||    +||+|.+..     +++.||+|++.....     .+.+..|+.+++.+      +||||+++++++.  
T Consensus         1 lg~G~~g----~Vy~~~~~~-----~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l------~~~~i~~~~~~~~--   63 (280)
T cd05608           1 LGKGGFG----EVSACQMRA-----TGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKV------HSRFIVSLAYAFQ--   63 (280)
T ss_pred             CCCCCce----eEEEEEEcc-----CCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhC------CCCcEeeeeEEEc--
Confidence            7999999    999999998     789999999875321     13457899999999      4999999999998  


Q ss_pred             ccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 005958          169 TTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLH  248 (667)
Q Consensus       169 ~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLH  248 (667)
                         ..+..|+||| |+++|+|.+++.....     ....+++                    ..++.++.||+.||.|||
T Consensus        64 ---~~~~~~lv~e-~~~~g~L~~~~~~~~~-----~~~~l~~--------------------~~~~~~~~qi~~~l~~lH  114 (280)
T cd05608          64 ---TKTDLCLVMT-IMNGGDLRYHIYNVDE-----ENPGFPE--------------------PRACFYTAQIISGLEHLH  114 (280)
T ss_pred             ---CCCeEEEEEe-CCCCCCHHHHHHhccc-----cCCCCCH--------------------HHHHHHHHHHHHHHHHHH
Confidence               7788999999 9999999988854220     0113444                    456789999999999999


Q ss_pred             HCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHHHHHHHHh
Q 005958          249 SHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVL  319 (667)
Q Consensus       249 s~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemlt  319 (667)
                      ++||+||||||+||+++. ++.+||+|||++..+..         +.+.|+|||.+. ...++.++|||||||++|||++
T Consensus       115 ~~~i~H~dlkp~Nili~~-~~~~~l~dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~-~~~~~~~~DvwslG~il~el~~  192 (280)
T cd05608         115 QRRIIYRDLKPENVLLDN-DGNVRISDLGLAVELKDGQSKTKGYAGTPGFMAPELLQ-GEEYDFSVDYFALGVTLYEMIA  192 (280)
T ss_pred             HCCcccCCCCHHHEEECC-CCCEEEeeCccceecCCCCccccccCCCcCccCHHHhc-CCCCCccccHHHHHHHHHHHHh
Confidence            999999999999999998 89999999999976543         236799999654 4568999999999999999999


Q ss_pred             CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC-----CHHHH
Q 005958          320 RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI-----SCLDA  394 (667)
Q Consensus       320 G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp-----Sa~el  394 (667)
                      |+.||.....           ..............       .......+++++.+|+.+||+.||++||     +++++
T Consensus       193 g~~pf~~~~~-----------~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~  254 (280)
T cd05608         193 ARGPFRARGE-----------KVENKELKQRILND-------SVTYPDKFSPASKSFCEALLAKDPEKRLGFRDGNCDGL  254 (280)
T ss_pred             CCCCCCCCCc-----------chhHHHHHHhhccc-------CCCCcccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHH
Confidence            9999852110           01111111112111       1223356789999999999999999999     88999


Q ss_pred             HcCCCCCCCCCCC
Q 005958          395 LRHPFLCGPRWRV  407 (667)
Q Consensus       395 L~HPwf~~~~~~~  407 (667)
                      ++||||++..|..
T Consensus       255 l~h~~~~~~~~~~  267 (280)
T cd05608         255 RTHPLFRDLNWRQ  267 (280)
T ss_pred             hcChhhhcCCHhH
Confidence            9999999977543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=2.3e-40  Score=353.06  Aligned_cols=243  Identities=17%  Similarity=0.225  Sum_probs=195.9

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh------hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEE
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ------AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYV  165 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~------~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~  165 (667)
                      +.||+|+||    .||+|++...  ..+++.||+|++....      ......+|+.+|+.++      ||||+++++++
T Consensus         2 ~~lg~G~~g----~V~~~~~~~~--~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~------hp~iv~~~~~~   69 (323)
T cd05584           2 KVLGKGGYG----KVFQVRKVTG--ADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVK------HPFIVDLIYAF   69 (323)
T ss_pred             ceeeecCCe----EEEEEEEccc--CCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCC------CCchhceeeEE
Confidence            689999999    9999987531  1268999999997532      1234578999999994      99999999999


Q ss_pred             EecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHH
Q 005958          166 SSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVN  245 (667)
Q Consensus       166 ~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~  245 (667)
                      .     .++.+|+||| |+++|+|.+++...+         .+.+                    ..++.++.||+.||.
T Consensus        70 ~-----~~~~~~lv~e-~~~~~~L~~~~~~~~---------~~~~--------------------~~~~~~~~qi~~~l~  114 (323)
T cd05584          70 Q-----TGGKLYLILE-YLSGGELFMHLEREG---------IFME--------------------DTACFYLSEISLALE  114 (323)
T ss_pred             e-----cCCeEEEEEe-CCCCchHHHHHHHcC---------CCCH--------------------HHHHHHHHHHHHHHH
Confidence            8     7789999999 999999999998754         4444                    346779999999999


Q ss_pred             HHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHHHHHH
Q 005958          246 YLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAK  316 (667)
Q Consensus       246 yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLye  316 (667)
                      |||++||+||||||+|||++. ++.+||+|||+++....         +.+.|+|||++. ...++.++|||||||++||
T Consensus       115 ~lH~~~ivH~dlkp~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwslG~il~e  192 (323)
T cd05584         115 HLHQQGIIYRDLKPENILLDA-QGHVKLTDFGLCKESIHEGTVTHTFCGTIEYMAPEILM-RSGHGKAVDWWSLGALMYD  192 (323)
T ss_pred             HHHHCCeecCCCCHHHeEECC-CCCEEEeeCcCCeecccCCCcccccCCCccccChhhcc-CCCCCCcceecccHHHHHH
Confidence            999999999999999999998 89999999999874321         236799999554 4568999999999999999


Q ss_pred             HHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC-----CH
Q 005958          317 MVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI-----SC  391 (667)
Q Consensus       317 mltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp-----Sa  391 (667)
                      |++|++||...            ....   .+..+...       .....+.+++++.+||.+||+.||++||     ++
T Consensus       193 ll~G~~pf~~~------------~~~~---~~~~~~~~-------~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~  250 (323)
T cd05584         193 MLTGAPPFTAE------------NRKK---TIDKILKG-------KLNLPPYLTPEARDLLKKLLKRNPSSRLGAGPGDA  250 (323)
T ss_pred             HhcCCCCCCCC------------CHHH---HHHHHHcC-------CCCCCCCCCHHHHHHHHHHcccCHhHcCCCCCCCH
Confidence            99999998522            1111   11222211       1233456788999999999999999999     89


Q ss_pred             HHHHcCCCCCCCCC
Q 005958          392 LDALRHPFLCGPRW  405 (667)
Q Consensus       392 ~elL~HPwf~~~~~  405 (667)
                      +++++||||....|
T Consensus       251 ~~l~~h~~~~~~~~  264 (323)
T cd05584         251 AEVQSHPFFRHVNW  264 (323)
T ss_pred             HHHhcCCCcCCCCH
Confidence            99999999988654

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=100.00  E-value=4.6e-40  Score=356.25  Aligned_cols=269  Identities=20%  Similarity=0.235  Sum_probs=202.2

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      ..++|++.+.||+|+||    .||+|.+..     +++.||||++...    .......+|+.+++.+      +||||+
T Consensus        22 ~~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~ii   86 (364)
T cd07875          22 VLKRYQNLKPIGSGAQG----IVCAAYDAI-----LERNVAIKKLSRPFQNQTHAKRAYRELVLMKCV------NHKNII   86 (364)
T ss_pred             hhcceeEEEEeecCCCe----EEEEEEECC-----CCcEEEEEEeCccccCchhHHHHHHHHHHHHhc------CCCCcc
Confidence            35899999999999999    999999987     7899999998752    2234567899999999      499999


Q ss_pred             EEEEEEEecc-cCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          160 QVHGYVSSHT-TSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       160 ~l~~~~~~~~-~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      ++++++.... ......+|+||| |+++ +|.+++..           .+++                    ..++.++.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~lv~e-~~~~-~l~~~~~~-----------~~~~--------------------~~~~~~~~  133 (364)
T cd07875          87 GLLNVFTPQKSLEEFQDVYIVME-LMDA-NLCQVIQM-----------ELDH--------------------ERMSYLLY  133 (364)
T ss_pred             ccceeecccccccccCeEEEEEe-CCCC-CHHHHHHh-----------cCCH--------------------HHHHHHHH
Confidence            9999886321 113356899999 9987 88888754           2343                    35678999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHH
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      |++.||+|||++||+||||||+|||++. ++.+||+|||+++.....        .+.|+|||++. ...++.++|||||
T Consensus       134 qi~~aL~~LH~~~ivH~Dlkp~NIll~~-~~~~kL~DfG~a~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~~DiwSl  211 (364)
T cd07875         134 QMLCGIKHLHSAGIIHRDLKPSNIVVKS-DCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVIL-GMGYKENVDIWSV  211 (364)
T ss_pred             HHHHHHHHHhhCCeecCCCCHHHEEECC-CCcEEEEeCCCccccCCCCcccCCcccCCcCCHHHHh-CCCCCchhhHHhH
Confidence            9999999999999999999999999998 899999999999765432        36899999654 4568999999999


Q ss_pred             HHHHHHHHhCCCCChhhh---hhhhhhhccCCChhHHHHHHH----HHhccCCCCCCCC-------------cccccCCC
Q 005958          311 GFMMAKMVLRELMDPLIF---TKFKSFLTKGIDPSCLREFLL----QVLNRNSSSGNTG-------------FQILDRNW  370 (667)
Q Consensus       311 GviLyemltG~~PF~~~~---~~~~~~~~~g~~~~~l~~~~~----~~~~~~~~~~~~~-------------~~~~~~~s  370 (667)
                      ||++|+|++|+.||....   .........+.+.......+.    ......+......             .......+
T Consensus       212 G~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (364)
T cd07875         212 GCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKA  291 (364)
T ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhhHHHHHHHhhCCCcCCCChHhhCcccccccccccccccc
Confidence            999999999999997422   222222333443322222111    1111111110000             01112245


Q ss_pred             HHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCC
Q 005958          371 GAGWNLLSLLLATKPSKRISCLDALRHPFLCG  402 (667)
Q Consensus       371 ~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~  402 (667)
                      .++++||.+||+.||++|||+.|+|+||||..
T Consensus       292 ~~~~dll~~mL~~dP~~R~t~~e~L~hp~~~~  323 (364)
T cd07875         292 SQARDLLSKMLVIDASKRISVDEALQHPYINV  323 (364)
T ss_pred             HHHHHHHHHhcCcCcccCCCHHHHhcCccccc
Confidence            68999999999999999999999999999975

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=2.9e-40  Score=359.56  Aligned_cols=255  Identities=15%  Similarity=0.228  Sum_probs=203.4

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCC
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      ..+..++|++.+.||+|+||    .||+|+++.     +++.||+|++.+..     ....+.+|+.+++.+      +|
T Consensus        38 ~~~~~~~y~i~~~lG~G~fg----~Vy~~~~~~-----~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~------~h  102 (371)
T cd05622          38 LRMKAEDYEVVKVIGRGAFG----EVQLVRHKS-----TRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFA------NS  102 (371)
T ss_pred             cCcchhhcEEEEEEeecCCe----EEEEEEECC-----CCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhC------CC
Confidence            34566899999999999999    999999998     89999999987522     223457899999988      49


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      |||+++++++.     +.+.+|+||| |+++|+|.+++...          .+++                    ..++.
T Consensus       103 p~iv~~~~~~~-----~~~~~~lv~E-y~~gg~L~~~~~~~----------~~~~--------------------~~~~~  146 (371)
T cd05622         103 PWVVQLFYAFQ-----DDRYLYMVME-YMPGGDLVNLMSNY----------DVPE--------------------KWARF  146 (371)
T ss_pred             CCCCeEEEEEE-----cCCEEEEEEc-CCCCCcHHHHHHhc----------CCCH--------------------HHHHH
Confidence            99999999998     7789999999 99999999999753          3444                    35677


Q ss_pred             HHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC----------CCCCCCCcccccCC---CCCC
Q 005958          236 LMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE----------DGPNNSSPDSNMDR---RQMM  302 (667)
Q Consensus       236 i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~----------~~~~Y~APE~l~~~---~~ys  302 (667)
                      ++.||+.||.|||++||+||||||+|||++. ++.+||+|||+|.....          +.+.|+|||++...   ..|+
T Consensus       147 ~~~qi~~aL~~LH~~~ivHrDLkp~NIll~~-~~~ikL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~  225 (371)
T cd05622         147 YTAEVVLALDAIHSMGFIHRDVKPDNMLLDK-SGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYG  225 (371)
T ss_pred             HHHHHHHHHHHHHHCCEEeCCCCHHHEEECC-CCCEEEEeCCceeEcCcCCcccccCcccCccccCHHHHhccCCCccCC
Confidence            9999999999999999999999999999998 89999999999976532          33679999976543   2488


Q ss_pred             chhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhh
Q 005958          303 IAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLA  382 (667)
Q Consensus       303 ~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~  382 (667)
                      .++|||||||++|||++|.+||..            .+...   ....+.....   ...++....+++++++||.+||.
T Consensus       226 ~~~DiwSlGvilyell~G~~Pf~~------------~~~~~---~~~~i~~~~~---~~~~~~~~~~s~~~~~li~~~L~  287 (371)
T cd05622         226 RECDWWSVGVFLYEMLVGDTPFYA------------DSLVG---TYSKIMNHKN---SLTFPDDNDISKEAKNLICAFLT  287 (371)
T ss_pred             CccceeehhHHHHHHHhCCCCCCC------------CCHHH---HHHHHHcCCC---cccCCCcCCCCHHHHHHHHHHcC
Confidence            999999999999999999999952            22211   1122222111   11123334688999999999998


Q ss_pred             cCcCC--CCCHHHHHcCCCCCCCCC
Q 005958          383 TKPSK--RISCLDALRHPFLCGPRW  405 (667)
Q Consensus       383 ~DP~k--RpSa~elL~HPwf~~~~~  405 (667)
                      .++.+  |++++++++||||++..|
T Consensus       288 ~~~~r~~r~~~~ei~~h~~~~~~~~  312 (371)
T cd05622         288 DREVRLGRNGVEEIKRHLFFKNDQW  312 (371)
T ss_pred             ChhhhcCCCCHHHHhcCcccCCCCh
Confidence            44433  789999999999988664

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.3e-40  Score=352.21  Aligned_cols=255  Identities=18%  Similarity=0.230  Sum_probs=200.3

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ++|++.+.||+|+||    +||+|++..     +++.||+|++.+..     ..+.+.+|+.+++.+      +|+||++
T Consensus         1 ~~y~~~~~lG~G~~g----~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~------~~~~i~~   65 (331)
T cd05597           1 DDFEILKVIGRGAFG----EVAVVKMKN-----TGQVYAMKILNKWEMLKRAETACFREERDVLVNG------DRRWITN   65 (331)
T ss_pred             CCceEEEEEEecCCe----EEEEEEECC-----CCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhC------CCCCCCc
Confidence            579999999999999    999999998     78999999997532     223457889999888      4999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     +.+++|+||| |+.+|+|.+++.+..        ..++|                    ..++.++.||
T Consensus        66 ~~~~~~-----~~~~~~lv~e-~~~g~~L~~~l~~~~--------~~~~~--------------------~~~~~~~~qi  111 (331)
T cd05597          66 LHYAFQ-----DENNLYLVMD-YYVGGDLLTLLSKFE--------DRLPE--------------------DMARFYLAEM  111 (331)
T ss_pred             eEEEEe-----cCCeEEEEEe-cCCCCcHHHHHHHhc--------CCCCH--------------------HHHHHHHHHH
Confidence            999998     7889999999 999999999997632        14554                    4567899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC----------CCCCCCCcccccC----CCCCCchhh
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE----------DGPNNSSPDSNMD----RRQMMIAFD  306 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~----------~~~~Y~APE~l~~----~~~ys~ksD  306 (667)
                      +.||+|||++||+||||||+|||++. ++.+||+|||++..+..          +.+.|+|||++..    ...++.++|
T Consensus       112 ~~~l~~lH~~~ivH~dlkp~Nill~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~D  190 (331)
T cd05597         112 VLAIDSVHQLGYVHRDIKPDNVLLDK-NGHIRLADFGSCLRLLADGTVQSNVAVGTPDYISPEILQAMEDGKGRYGPECD  190 (331)
T ss_pred             HHHHHHHHhCCeEECCCCHHHEEECC-CCCEEEEECCceeecCCCCCccccceeccccccCHHHHhhccccccCCCCcce
Confidence            99999999999999999999999998 89999999999875432          2367999997652    345788999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          307 MRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       307 IWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      |||+||++|||++|+.||...            .....   ...+.......  ........+++++++||.+||..+++
T Consensus       191 iwslG~~l~el~~g~~Pf~~~------------~~~~~---~~~i~~~~~~~--~~~~~~~~~~~~~~~li~~ll~~~~~  253 (331)
T cd05597         191 WWSLGVCMYEMLYGETPFYAE------------SLVET---YGKIMNHKEHF--QFPPDVTDVSEEAKDLIRRLICSPET  253 (331)
T ss_pred             eehhhhHHHHHhhCCCCCCCC------------CHHHH---HHHHHcCCCcc--cCCCccCCCCHHHHHHHHHHccCccc
Confidence            999999999999999998521            11111   11111110000  00112234788999999999976554


Q ss_pred             C--CCCHHHHHcCCCCCCCCCCC
Q 005958          387 K--RISCLDALRHPFLCGPRWRV  407 (667)
Q Consensus       387 k--RpSa~elL~HPwf~~~~~~~  407 (667)
                      +  |+++.++++||||.+.+|..
T Consensus       254 r~~r~~~~~~l~hp~~~~~~~~~  276 (331)
T cd05597         254 RLGRNGLQDFKDHPFFEGIDWDN  276 (331)
T ss_pred             ccCCCCHHHHhcCCCCCCCCHHH
Confidence            4  78999999999999877533

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.9e-40  Score=343.71  Aligned_cols=252  Identities=15%  Similarity=0.196  Sum_probs=201.4

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      .|++.+.||+|+||    .||++.+..     +++.||||++....     ......+|+.+++.++      ||||+++
T Consensus         1 ~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~------h~~iv~~   65 (285)
T cd05605           1 TFRHYRVLGKGGFG----EVCACQVRA-----TGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVN------SRFVVSL   65 (285)
T ss_pred             CceEEEEEecCCCe----EEEEEEEcC-----CCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcC------CCCEeee
Confidence            48999999999999    999999987     78999999987532     1234578999999994      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     ..+.+++||| |+++|+|.+++.....       ..+++                    ..+..++.|++
T Consensus        66 ~~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~~~-------~~~~~--------------------~~~~~~~~qi~  112 (285)
T cd05605          66 AYAYE-----TKDALCLVLT-LMNGGDLKFHIYNMGN-------PGFDE--------------------ERAVFYAAEIT  112 (285)
T ss_pred             eeeec-----CCCeEEEEEe-ccCCCcHHHHHHhcCc-------CCCCH--------------------HHHHHHHHHHH
Confidence            99998     7789999999 9999999998865320       13444                    45778999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      .||.|||++||+||||||+||+++. ++.++|+|||++......        ...|+|||++. ...++.++||||+||+
T Consensus       113 ~~l~~lH~~~ivH~dlkp~Nil~~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Diws~G~~  190 (285)
T cd05605         113 CGLEDLHRERIVYRDLKPENILLDD-YGHIRISDLGLAVEIPEGETIRGRVGTVGYMAPEVVK-NERYTFSPDWWGLGCL  190 (285)
T ss_pred             HHHHHHHHCCcEecCCCHHHEEECC-CCCEEEeeCCCceecCCCCccccccCCCCccCcHHhc-CCCCCccccchhHHHH
Confidence            9999999999999999999999998 899999999999765322        36799999654 4568999999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC----
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI----  389 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp----  389 (667)
                      +|||++|+.||.+.            ......+.+.......      .......+++.+.+||.+||..||++||    
T Consensus       191 l~el~~g~~pf~~~------------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~  252 (285)
T cd05605         191 IYEMIEGKSPFRQR------------KEKVKREEVERRVKED------QEEYSEKFSEAARSICRQLLTKDPGFRLGCRG  252 (285)
T ss_pred             HHHHHHCCCCCCCC------------chhhHHHHHHHHhhhc------ccccCcccCHHHHHHHHHHccCCHHHhcCCCC
Confidence            99999999999521            1111111111111111      1122345788999999999999999999    


Q ss_pred             -CHHHHHcCCCCCCCCCC
Q 005958          390 -SCLDALRHPFLCGPRWR  406 (667)
Q Consensus       390 -Sa~elL~HPwf~~~~~~  406 (667)
                       +++++++||||...+|.
T Consensus       253 ~~~~~l~~~~~~~~~~~~  270 (285)
T cd05605         253 EGAEEVKAHPFFRTANFK  270 (285)
T ss_pred             CCHHHHhcCcCccCCCHH
Confidence             99999999999987753

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>PHA03207 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.1e-39  Score=357.29  Aligned_cols=269  Identities=17%  Similarity=0.174  Sum_probs=200.7

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      ...+|++++.||.|+||    .||+|.....   .+++.||+|.+...   ....+|+++|++++      ||||+++++
T Consensus        90 ~~~~y~i~~~Lg~G~~g----~Vy~~~~~~~---~~~~~v~vK~~~~~---~~~~~E~~il~~l~------h~~iv~~~~  153 (392)
T PHA03207         90 VRMQYNILSSLTPGSEG----EVFVCTKHGD---EQRKKVIVKAVTGG---KTPGREIDILKTIS------HRAIINLIH  153 (392)
T ss_pred             ccCceEEEEeecCCCCe----EEEEEEEcCC---ccceeEEEEecccc---ccHHHHHHHHHhcC------CCCccceee
Confidence            34679999999999999    9999987542   15788999998653   34568999999994      999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++.     .....|+||| ++.+ +|.+++....         .+++                    ..++.|+.||+.|
T Consensus       154 ~~~-----~~~~~~lv~e-~~~~-~l~~~l~~~~---------~l~~--------------------~~~~~i~~ql~~a  197 (392)
T PHA03207        154 AYR-----WKSTVCMVMP-KYKC-DLFTYVDRSG---------PLPL--------------------EQAITIQRRLLEA  197 (392)
T ss_pred             eEe-----eCCEEEEEeh-hcCC-CHHHHHHhcC---------CCCH--------------------HHHHHHHHHHHHH
Confidence            998     7789999999 8876 9999986543         4444                    4578899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-----------CCCCCCCcccccCCCCCCchhhHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-----------DGPNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-----------~~~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      |.|||++||+||||||+|||++. ++.+||+|||++.....           +.+.|+|||++ ....|+.++|||||||
T Consensus       198 L~~LH~~givHrDlkp~Nill~~-~~~~~l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DvwslGv  275 (392)
T PHA03207        198 LAYLHGRGIIHRDVKTENIFLDE-PENAVLGDFGAACKLDAHPDTPQCYGWSGTLETNSPELL-ALDPYCAKTDIWSAGL  275 (392)
T ss_pred             HHHHHHCCccccCCCHHHEEEcC-CCCEEEccCccccccCcccccccccccccccCccCHhHh-cCCCCCchhhHHHHHH
Confidence            99999999999999999999998 89999999999975432           23679999955 4556899999999999


Q ss_pred             HHHHHHhCCCCChhhh------hhhhhhhccCCCh--------hHHHHHHHHHhccC-CCCCCCCcccccCCCHHHHHHH
Q 005958          313 MMAKMVLRELMDPLIF------TKFKSFLTKGIDP--------SCLREFLLQVLNRN-SSSGNTGFQILDRNWGAGWNLL  377 (667)
Q Consensus       313 iLyemltG~~PF~~~~------~~~~~~~~~g~~~--------~~l~~~~~~~~~~~-~~~~~~~~~~~~~~s~e~~dLI  377 (667)
                      ++|||++|+.||.+..      ++..+....+..+        ..+...+....... .+......-.....+.++.+||
T Consensus       276 il~el~~g~~pf~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  355 (392)
T PHA03207        276 VLFEMSVKNVTLFGKQVKSSSSQLRSIIRCMQVHPLEFPQNGSTNLCKHFKQYAIVLRPPYTIPPVIRKYGMHMDVEYLI  355 (392)
T ss_pred             HHHHHHHCCCCCCCCCCCCcHHHHHHHHHHhccCccccCCccchhHHHHHHhhcccccCCccccchhhccCcchhHHHHH
Confidence            9999999999986321      1111111111111        11111111111000 0000000000123567899999


Q ss_pred             HHhhhcCcCCCCCHHHHHcCCCCCCCCCC
Q 005958          378 SLLLATKPSKRISCLDALRHPFLCGPRWR  406 (667)
Q Consensus       378 ~~~L~~DP~kRpSa~elL~HPwf~~~~~~  406 (667)
                      .+||.+||++|||+.|+|+||||...+|.
T Consensus       356 ~~ml~~dp~~Rpsa~e~l~~p~f~~~~~~  384 (392)
T PHA03207        356 AKMLTFDQEFRPSAQDILSLPLFTKEPIN  384 (392)
T ss_pred             HHHhccChhhCCCHHHHhhCchhhccchh
Confidence            99999999999999999999999887643

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=100.00  E-value=6.5e-40  Score=340.79  Aligned_cols=263  Identities=20%  Similarity=0.288  Sum_probs=201.7

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      +|++.+.||+|+||    .||+|++..     +++.||||.+....    ......+|+.+++.+.      ||||++++
T Consensus         1 ~y~~~~~l~~g~~~----~v~~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~~~   65 (285)
T cd07861           1 DYTKIEKIGEGTYG----VVYKGRNKK-----TGQIVAMKKIRLESEEEGVPSTAIREISLLKELQ------HPNIVCLQ   65 (285)
T ss_pred             CceEeeEecccCce----EEEEEEECC-----CCcEEEEEEeccccccCCchHHHHHHHHHHHhcC------CCCEeeeE
Confidence            58999999999999    999999987     78999999987532    2345688999999994      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     .++.+|+||| |+++ +|.+++.....      ...+++                    ..++.++.||+.
T Consensus        66 ~~~~-----~~~~~~~v~e-~~~~-~l~~~~~~~~~------~~~~~~--------------------~~~~~~~~qi~~  112 (285)
T cd07861          66 DVLM-----QESRLYLIFE-FLSM-DLKKYLDSLPK------GQYMDA--------------------ELVKSYLYQILQ  112 (285)
T ss_pred             EEEe-----eCCeEEEEEe-cCCC-CHHHHHhcCCC------CCcCCH--------------------HHHHHHHHHHHH
Confidence            9998     7789999999 9985 99999875321      113443                    567889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      ||+|||++||+||||||+||+++. ++.+||+|||++......         .+.|+|||.+.+...++.++|||||||+
T Consensus       113 ~L~~lH~~~i~H~dl~p~nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~i  191 (285)
T cd07861         113 GILFCHSRRVLHRDLKPQNLLIDN-KGVIKLADFGLARAFGIPVRVYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTI  191 (285)
T ss_pred             HHHHHHhCCeeecCCCHHHEEEcC-CCcEEECcccceeecCCCcccccCCcccccccChHHhcCCCCcCcHHHHHHHHHH
Confidence            999999999999999999999998 899999999998754321         3679999977766778999999999999


Q ss_pred             HHHHHhCCCCChhhh---hhhhhhhccCCChhHHHHH------HHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          314 MAKMVLRELMDPLIF---TKFKSFLTKGIDPSCLREF------LLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       314 LyemltG~~PF~~~~---~~~~~~~~~g~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      +|+|++|++||....   .....+...+.........      .........  ..........+++++++||.+||+.|
T Consensus       192 l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~li~~~l~~d  269 (285)
T cd07861         192 FAEMATKKPLFHGDSEIDQLFRIFRILGTPTEDVWPGVTSLPDYKNTFPKWK--KGSLRSAVKNLDEDGLDLLEKMLIYD  269 (285)
T ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhcchhhHHHHhhccccC--cchhHHhcCCCCHHHHHHHHHHhcCC
Confidence            999999999997422   2222222222221111100      011110000  00011123457899999999999999


Q ss_pred             cCCCCCHHHHHcCCCC
Q 005958          385 PSKRISCLDALRHPFL  400 (667)
Q Consensus       385 P~kRpSa~elL~HPwf  400 (667)
                      |++|||+.++++||||
T Consensus       270 P~~Rpt~~~ll~~~~~  285 (285)
T cd07861         270 PAKRISAKKALNHPYF  285 (285)
T ss_pred             hhhCCCHHHHhcCCCC
Confidence            9999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-41  Score=342.63  Aligned_cols=266  Identities=15%  Similarity=0.168  Sum_probs=211.2

Q ss_pred             CeEEE-eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           87 DFKIL-DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        87 ~y~i~-~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      -|++. +.||+|+|+    .|--|....     ++..||||++.+.  ....++.||++++...+     +|+||+++++
T Consensus        78 ~YkLt~e~LGeGAya----sVqtcv~i~-----t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cq-----gh~nilqLie  143 (463)
T KOG0607|consen   78 MYKLTSELLGEGAYA----SVQTCVSIQ-----TGKEYAVKIIDKQPGHSRSRVFREVETFYQCQ-----GHKNILQLIE  143 (463)
T ss_pred             HHHhHHHHhcCccce----eeeeeeeec-----cchhhhhhhhhcCCchHHHHHHHHHHHHHHhc-----CCccHHHHHH
Confidence            35543 678999999    999999998     8999999999873  34567899999999999     8999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      +|+     ++..+||||| -+.||.|...|.++.         .|+|.+|.                    .+.++|+.|
T Consensus       144 fFE-----dd~~FYLVfE-Km~GGplLshI~~~~---------~F~E~EAs--------------------~vvkdia~a  188 (463)
T KOG0607|consen  144 FFE-----DDTRFYLVFE-KMRGGPLLSHIQKRK---------HFNEREAS--------------------RVVKDIASA  188 (463)
T ss_pred             Hhc-----ccceEEEEEe-cccCchHHHHHHHhh---------hccHHHHH--------------------HHHHHHHHH
Confidence            999     8899999999 999999999999876         78887764                    489999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCC--CeEEEeeecccccccCC----------------CCCCCCccccc----CCCCC
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVD--RHIKVGILGNAADFYED----------------GPNNSSPDSNM----DRRQM  301 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~--~~vKL~DFGlA~~~~~~----------------~~~Y~APE~l~----~~~~y  301 (667)
                      |.|||.+||.||||||+|||....+  .-+|||||.++.-....                ...|||||++.    ....|
T Consensus       189 LdFlH~kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv~qA~~Y  268 (463)
T KOG0607|consen  189 LDFLHTKGIAHRDLKPENILCESPNKVSPVKICDFDLGSGIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVFVDQATFY  268 (463)
T ss_pred             HHHHhhcCcccccCCccceeecCCCCcCceeeeccccccccccCCCCCCCCCccccCcccchhhcchhHHhhhccccccc
Confidence            9999999999999999999998633  24899999887543222                15799999753    44578


Q ss_pred             CchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCCh-hHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHh
Q 005958          302 MIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDP-SCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLL  380 (667)
Q Consensus       302 s~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~  380 (667)
                      +.++|.||||||+|.|+.|.+||.+.-.....+ ..|..- ......+..+-.+...+.   -..|..+|.+++|||+.+
T Consensus       269 DKrCDlwSLGvIlYImLsGYpPFvG~Cg~dCGW-drGe~Cr~CQ~~LFesIQEGkYeFP---dkdWahIS~eakdlisnL  344 (463)
T KOG0607|consen  269 DKRCDLWSLGVILYIMLSGYPPFVGHCGADCGW-DRGEVCRVCQNKLFESIQEGKYEFP---DKDWAHISSEAKDLISNL  344 (463)
T ss_pred             cccccHHHHHHHHHHHHhCCCCccCccCCcCCc-cCCCccHHHHHHHHHHHhccCCcCC---hhhhHHhhHHHHHHHHHH
Confidence            999999999999999999999997532211100 122222 223333344433322211   124567899999999999


Q ss_pred             hhcCcCCCCCHHHHHcCCCCCCCCC
Q 005958          381 LATKPSKRISCLDALRHPFLCGPRW  405 (667)
Q Consensus       381 L~~DP~kRpSa~elL~HPwf~~~~~  405 (667)
                      |..||.+|.+|.++++|||++....
T Consensus       345 lvrda~~rlsa~~vlnhPw~~~~~~  369 (463)
T KOG0607|consen  345 LVRDAKQRLSAAQVLNHPWVQRCAP  369 (463)
T ss_pred             HhccHHhhhhhhhccCCccccccch
Confidence            9999999999999999999998753

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=2.8e-40  Score=352.18  Aligned_cols=240  Identities=20%  Similarity=0.256  Sum_probs=192.2

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-----HHHHHHHHHH-HHHHhhccCCCCCcceEEEEEE
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-----QRRGRRAIEV-LKKLVRRRLMYHSYSMQVHGYV  165 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-----~~~~~rEi~i-L~~L~~~~~~~HpnIv~l~~~~  165 (667)
                      +.||+|+||    +||+|++..     +++.||||++.....     ...+.+|..+ ++.+      .||||+++++++
T Consensus         1 ~~lg~G~~g----~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l------~hp~iv~~~~~~   65 (323)
T cd05575           1 KVIGKGSFG----KVLLAKHKA-----DGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNV------KHPFLVGLHYSF   65 (323)
T ss_pred             CeeeeCCCe----EEEEEEECC-----CCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhC------CCCCCCCeeEEE
Confidence            479999999    999999987     799999999975321     2233455443 4556      599999999999


Q ss_pred             EecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHH
Q 005958          166 SSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVN  245 (667)
Q Consensus       166 ~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~  245 (667)
                      .     ..+.+|+||| |+++|+|.+++...+         .+++                    ..++.++.||+.||+
T Consensus        66 ~-----~~~~~~lv~e-~~~~g~L~~~l~~~~---------~~~~--------------------~~~~~~~~qi~~~l~  110 (323)
T cd05575          66 Q-----TADKLYFVLD-YVNGGELFFHLQRER---------SFPE--------------------PRARFYAAEIASALG  110 (323)
T ss_pred             E-----eCCEEEEEEc-CCCCCCHHHHHHhcC---------CCCH--------------------HHHHHHHHHHHHHHH
Confidence            8     7789999999 999999999998654         4554                    346779999999999


Q ss_pred             HHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHHHHHH
Q 005958          246 YLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAK  316 (667)
Q Consensus       246 yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLye  316 (667)
                      |||++||+||||||+|||++. ++.+||+|||++.....         +.+.|+|||++. ...++.++|||||||++||
T Consensus       111 ~lH~~givH~dikp~NIll~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DvwslG~il~e  188 (323)
T cd05575         111 YLHSLNIIYRDLKPENILLDS-QGHVVLTDFGLCKEGIEHSKTTSTFCGTPEYLAPEVLR-KQPYDRTVDWWCLGAVLYE  188 (323)
T ss_pred             HHHHCCeEeCCCCHHHeEECC-CCcEEEeccCCCcccccCCCccccccCChhhcChhhhc-CCCCCccccccccchhhhh
Confidence            999999999999999999998 89999999999875321         236799999654 4568999999999999999


Q ss_pred             HHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH----H
Q 005958          317 MVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC----L  392 (667)
Q Consensus       317 mltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa----~  392 (667)
                      |++|.+||..            .+...+   ...+....       ....+..++++.+||.+||+.||++||++    .
T Consensus       189 ll~g~~pf~~------------~~~~~~---~~~i~~~~-------~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~  246 (323)
T cd05575         189 MLYGLPPFYS------------RDTAEM---YDNILNKP-------LRLKPNISVSARHLLEGLLQKDRTKRLGAKDDFL  246 (323)
T ss_pred             hhcCCCCCCC------------CCHHHH---HHHHHcCC-------CCCCCCCCHHHHHHHHHHhhcCHHhCCCCCCCHH
Confidence            9999999852            222222   22222211       22334678899999999999999999998    6


Q ss_pred             HHHcCCCCCCCCC
Q 005958          393 DALRHPFLCGPRW  405 (667)
Q Consensus       393 elL~HPwf~~~~~  405 (667)
                      ++++||||....|
T Consensus       247 ~il~~~~~~~~~~  259 (323)
T cd05575         247 EIKNHVFFSSINW  259 (323)
T ss_pred             HHHcCCCcCCCCH
Confidence            9999999988764

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=5.7e-40  Score=350.68  Aligned_cols=249  Identities=19%  Similarity=0.256  Sum_probs=198.3

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEE
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVS  166 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~  166 (667)
                      +.||+|+||    .||+|.+..     +++.||+|++.+..     ..+.+.+|+.++.++.     .||||+++++++.
T Consensus         1 ~~lG~G~~g----~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~-----~~~~i~~~~~~~~   66 (327)
T cd05617           1 RVIGRGSYA----KVLLVRLKK-----NDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQAS-----SNPFLVGLHSCFQ   66 (327)
T ss_pred             CeeeeCCCe----EEEEEEECC-----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhc-----CCCCEeeEEEEEE
Confidence            479999999    999999988     78999999998632     2234678999999886     6999999999998


Q ss_pred             ecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHH
Q 005958          167 SHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNY  246 (667)
Q Consensus       167 ~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~y  246 (667)
                           ..+.+|+||| |+++|+|.+++...+         .+++                    ..++.++.||+.||+|
T Consensus        67 -----~~~~~~lv~e-~~~~~~L~~~~~~~~---------~l~~--------------------~~~~~~~~qi~~al~~  111 (327)
T cd05617          67 -----TTSRLFLVIE-YVNGGDLMFHMQRQR---------KLPE--------------------EHARFYAAEICIALNF  111 (327)
T ss_pred             -----eCCEEEEEEe-CCCCCcHHHHHHHcC---------CCCH--------------------HHHHHHHHHHHHHHHH
Confidence                 7789999999 999999999987654         4554                    4577899999999999


Q ss_pred             HHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHHHHHHH
Q 005958          247 LHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKM  317 (667)
Q Consensus       247 LHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyem  317 (667)
                      ||++||+||||||+|||++. ++.+||+|||++.....         +.+.|+|||++. ...|+.++|||||||++|||
T Consensus       112 lH~~~ivHrDlkp~Nili~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwslGvil~el  189 (327)
T cd05617         112 LHERGIIYRDLKLDNVLLDA-DGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILR-GEEYGFSVDWWALGVLMFEM  189 (327)
T ss_pred             HHHCCeeccCCCHHHEEEeC-CCCEEEeccccceeccCCCCceecccCCcccCCHHHHC-CCCCCchheeehhHHHHHHH
Confidence            99999999999999999998 89999999999875321         236799999654 55689999999999999999


Q ss_pred             HhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC------H
Q 005958          318 VLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS------C  391 (667)
Q Consensus       318 ltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS------a  391 (667)
                      ++|.+||.....         .......+.+.......      ....+...+.++.++|.+||+.||++|++      .
T Consensus       190 l~g~~pf~~~~~---------~~~~~~~~~~~~~~~~~------~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~  254 (327)
T cd05617         190 MAGRSPFDIITD---------NPDMNTEDYLFQVILEK------PIRIPRFLSVKASHVLKGFLNKDPKERLGCQPQTGF  254 (327)
T ss_pred             HhCCCCCCccCC---------CcccccHHHHHHHHHhC------CCCCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCH
Confidence            999999952110         00001111111111111      12234457889999999999999999998      4


Q ss_pred             HHHHcCCCCCCCCCC
Q 005958          392 LDALRHPFLCGPRWR  406 (667)
Q Consensus       392 ~elL~HPwf~~~~~~  406 (667)
                      +++++||||....|.
T Consensus       255 ~~i~~h~~f~~~~~~  269 (327)
T cd05617         255 SDIKSHTFFRSIDWD  269 (327)
T ss_pred             HHHHcCCCCCCCCHH
Confidence            799999999998764

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=6.2e-40  Score=351.42  Aligned_cols=265  Identities=16%  Similarity=0.211  Sum_probs=203.2

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      +..++|++.++||+|+||    .||+|.+..     ++..+|+|++...   .....+.+|+++++.++      ||||+
T Consensus         2 l~~~~y~~~~~lg~g~~g----~V~~~~~~~-----~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~------h~~iv   66 (333)
T cd06650           2 LKDDDFEKISELGAGNGG----VVFKVSHKP-----SGLIMARKLIHLEIKPAIRNQIIRELQVLHECN------SPYIV   66 (333)
T ss_pred             cchhhhheeccccCCCCE----EEEEEEECC-----CCcEEEEEEeecccCHHHHHHHHHHHHHHHHCC------CCccc
Confidence            345899999999999999    999999987     7899999998753   22355789999999994      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++.     ..+.+|+||| |+.+|+|.+++...+         .+++                    ..++.++.|
T Consensus        67 ~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~~~~~~  111 (333)
T cd06650          67 GFYGAFY-----SDGEISICME-HMDGGSLDQVLKKAG---------RIPE--------------------QILGKVSIA  111 (333)
T ss_pred             ceeEEEE-----ECCEEEEEEe-cCCCCcHHHHHHHcC---------CCCH--------------------HHHHHHHHH
Confidence            9999999     7789999999 999999999998654         3443                    456789999


Q ss_pred             HHHHHHHHHHC-CCcccCCCCCcEEEcCCCCeEEEeeecccccccC-------CCCCCCCcccccCCCCCCchhhHHHHH
Q 005958          240 LLIGVNYLHSH-GLAHTELRLENVHISPVDRHIKVGILGNAADFYE-------DGPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       240 Il~aL~yLHs~-gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-------~~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      ++.||.|||+. +|+||||||+|||++. ++.+||+|||++.....       +...|+|||.+. ...++.++||||||
T Consensus       112 l~~~l~~lH~~~~ivH~dlkp~Nili~~-~~~~kL~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~DvwslG  189 (333)
T cd06650         112 VIKGLTYLREKHKIMHRDVKPSNILVNS-RGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQ-GTHYSVQSDIWSMG  189 (333)
T ss_pred             HHHHHHHHHhcCCEEecCCChhhEEEcC-CCCEEEeeCCcchhhhhhccccCCCCccccCHHHhc-CCCCCcHHHHHHHH
Confidence            99999999985 7999999999999998 88999999999975432       236799999654 45689999999999


Q ss_pred             HHHHHHHhCCCCChhhhh--hhhhh--hccCCCh-------------------------hHHHHHHHHHhccCCCCCCCC
Q 005958          312 FMMAKMVLRELMDPLIFT--KFKSF--LTKGIDP-------------------------SCLREFLLQVLNRNSSSGNTG  362 (667)
Q Consensus       312 viLyemltG~~PF~~~~~--~~~~~--~~~g~~~-------------------------~~l~~~~~~~~~~~~~~~~~~  362 (667)
                      |++|+|++|+.||.....  ....+  ...+...                         .........+.....+.    
T Consensus       190 ~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  265 (333)
T cd06650         190 LSLVEMAIGRYPIPPPDAKELELMFGCPVEGDPAESETSPRPRPPGRPLSSYGPDSRPPMAIFELLDYIVNEPPPK----  265 (333)
T ss_pred             HHHHHHHHCCCCCCCcchhHHHHHhcCcccCCccccccCcccCCccchhhhhcccccccccHHHHHHHHhcCCCcc----
Confidence            999999999999863211  10000  0000000                         00111111111111110    


Q ss_pred             cccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          363 FQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       363 ~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                       ......++++++||.+||++||++|||++|+++||||+...
T Consensus       266 -~~~~~~~~~~~~li~~~L~~~P~~Rpt~~ell~h~~~~~~~  306 (333)
T cd06650         266 -LPSGVFGAEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSE  306 (333)
T ss_pred             -CCCCCcCHHHHHHHHHhccCCcccCcCHHHHhhCHHHhcCc
Confidence             01123578999999999999999999999999999998754

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=100.00  E-value=7e-40  Score=340.73  Aligned_cols=263  Identities=21%  Similarity=0.297  Sum_probs=200.3

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      +|++.+.||+|+||    .||+|++..     +|+.||+|.+....    ....+.+|++++++++      ||||++++
T Consensus         1 ~y~~~~~l~~g~~~----~vy~~~~~~-----~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~------h~~i~~~~   65 (284)
T cd07839           1 KYEKLEKIGEGTYG----TVFKAKNRE-----THEIVALKRVRLDDDDEGVPSSALREICLLKELK------HKNIVRLY   65 (284)
T ss_pred             CceeEEEecccCCe----EEEEEEECC-----CCcEEEEEEeecccccccCccchhHHHHHHHhcC------CCCeeeHH
Confidence            58999999999999    999999998     78999999987532    1235678999999994      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     +.+.+++|+| |+++ +|.+++....        ..+++                    ..++.++.||+.
T Consensus        66 ~~~~-----~~~~~~lv~e-~~~~-~l~~~~~~~~--------~~~~~--------------------~~~~~~~~qi~~  110 (284)
T cd07839          66 DVLH-----SDKKLTLVFE-YCDQ-DLKKYFDSCN--------GDIDP--------------------EIVKSFMFQLLK  110 (284)
T ss_pred             HHhc-----cCCceEEEEe-cCCC-CHHHHHHhcC--------CCCCH--------------------HHHHHHHHHHHH
Confidence            9998     7789999999 9986 8998887532        13444                    457889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      ||.|||++||+||||||+||+++. ++.+||+|||++..+...         ...|+|||.+.+...++.++|||||||+
T Consensus       111 al~~LH~~~i~H~dl~~~nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~i  189 (284)
T cd07839         111 GLAFCHSHNVLHRDLKPQNLLINK-NGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCI  189 (284)
T ss_pred             HHHHHHHCCEecCCCCHHHEEEcC-CCcEEECccchhhccCCCCCCcCCCccccCCcChHHHhCCcccCcHHHHHHHHHH
Confidence            999999999999999999999998 899999999999765432         2679999987777778999999999999


Q ss_pred             HHHHHhCCCCCh-hh---hhhhhhhhccCCChhHHHHHHHHHhccC-CCCCC---CCcccccCCCHHHHHHHHHhhhcCc
Q 005958          314 MAKMVLRELMDP-LI---FTKFKSFLTKGIDPSCLREFLLQVLNRN-SSSGN---TGFQILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       314 LyemltG~~PF~-~~---~~~~~~~~~~g~~~~~l~~~~~~~~~~~-~~~~~---~~~~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      +|+|++|..||. ..   .....++...+.+.......+....... .+...   ...+..+.+++++++||.+||+.||
T Consensus       190 l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P  269 (284)
T cd07839         190 FAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEESWPGVSKLPDYKPYPMYPATTSLVNVVPKLNSTGRDLLQNLLVCNP  269 (284)
T ss_pred             HHHHHhcCCCCcCCCCHHHHHHHHHHHhCCCChHHhHHhhhcccccccCCCCCcchhhhhcccCCHHHHHHHHHHhcCCh
Confidence            999999887753 11   1111222222322221111111100000 00000   0012335678999999999999999


Q ss_pred             CCCCCHHHHHcCCCC
Q 005958          386 SKRISCLDALRHPFL  400 (667)
Q Consensus       386 ~kRpSa~elL~HPwf  400 (667)
                      .+|||++++++||||
T Consensus       270 ~~R~t~~~il~h~~f  284 (284)
T cd07839         270 VQRISAEEALQHPYF  284 (284)
T ss_pred             hhcCCHHHHhcCCCC
Confidence            999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=9.2e-40  Score=349.71  Aligned_cols=278  Identities=13%  Similarity=0.131  Sum_probs=200.1

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      +++..++|++.+.||+|+||    .||+|.+.......+++.||||++...   .....+.+|+.+++++.     +|||
T Consensus         2 ~~~~~~~~~~~~~lG~G~fg----~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~n   72 (338)
T cd05102           2 WEFPRDRLRLGKVLGHGAFG----KVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIG-----NHLN   72 (338)
T ss_pred             cccchhHceeeeEeccCCcc----eEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhc-----cCcc
Confidence            45667899999999999999    999998754323336788999998753   22345789999999995     5999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcc-cccccCCCHHH-----------Hhh----------
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPT-LEATLALDEES-----------VRK----------  215 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~-l~~~~~l~E~~-----------a~~----------  215 (667)
                      |+++++++..    ..+.+++||| |+++|+|.+++........ ...  ...+..           ..+          
T Consensus        73 iv~~~~~~~~----~~~~~~lv~e-y~~~g~L~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (338)
T cd05102          73 VVNLLGACTK----PNGPLMVIVE-FCKYGNLSNFLRAKREFFSPYRE--KSPKQRGRFRAMVEQSRVDRRIEAGQASVL  145 (338)
T ss_pred             eeeEEeEecC----CCCceEEEEe-cCCCCcHHHHHHhcchhcccccc--cchhhhhhhhhhhhhhccccccccccCCcc
Confidence            9999998862    3457899999 9999999999986431100 000  000000           000          


Q ss_pred             ---cC----------CCCCCCCCccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccc
Q 005958          216 ---VG----------DDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADF  282 (667)
Q Consensus       216 ---~~----------~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~  282 (667)
                         +.          .........+++...+..++.||+.||.|||++||+||||||+|||++. ++.+||+|||+++..
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDiKp~Nil~~~-~~~~kl~DfG~a~~~  224 (338)
T cd05102         146 FSRFQPSTSGSTNPPQETDDLWKSPLTMEDLICYSFQVARGMEFLASRKCIHRDLAARNILLSE-NNVVKICDFGLARDI  224 (338)
T ss_pred             ccccccccCcccccchhccccccCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCccceEEEcC-CCcEEEeeccccccc
Confidence               00          0000001124566788999999999999999999999999999999998 899999999999754


Q ss_pred             cCC-----------CCCCCCcccccCCCCCCchhhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHH
Q 005958          283 YED-----------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQ  350 (667)
Q Consensus       283 ~~~-----------~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~  350 (667)
                      ...           ...|+|||++. ...|+.++|||||||++|||++ |.+||+...           ........+. 
T Consensus       225 ~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~sDiwslG~il~el~~~g~~pf~~~~-----------~~~~~~~~~~-  291 (338)
T cd05102         225 YKDPDYVRKGSARLPLKWMAPESIF-DKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQ-----------INEEFCQRLK-  291 (338)
T ss_pred             ccCcchhcccCCCCCccccCcHHhh-cCCCCcccCHHHHHHHHHHHHhCCCCCCCCCC-----------ccHHHHHHHh-
Confidence            321           14699999654 4568999999999999999997 999986321           0111111111 


Q ss_pred             HhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHc
Q 005958          351 VLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALR  396 (667)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~  396 (667)
                        ...      ........++++.+||.+||+.||++|||+.|+++
T Consensus       292 --~~~------~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~el~~  329 (338)
T cd05102         292 --DGT------RMRAPENATPEIYRIMLACWQGDPKERPTFSALVE  329 (338)
T ss_pred             --cCC------CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHH
Confidence              110      11223467889999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=100.00  E-value=8.9e-40  Score=349.79  Aligned_cols=254  Identities=18%  Similarity=0.234  Sum_probs=199.9

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ++|++.+.||+|+||    +||+++++.     +++.||+|++.+..     ....+.+|+.++..+      .|+||++
T Consensus         1 ~~y~~~~~lG~G~fg----~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~------~~~~i~~   65 (332)
T cd05623           1 EDFEILKVIGRGAFG----EVAVVKLKN-----ADKVFAMKILNKWEMLKRAETACFREERDVLVNG------DNQWITT   65 (332)
T ss_pred             CCceEEEEEEeCCCe----EEEEEEECC-----CCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhC------CCCCEee
Confidence            479999999999999    999999987     78999999996522     122357788888887      5999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     +.+.+|+||| |+.+|+|.+++.+.+        ..+++                    ..++.++.||
T Consensus        66 ~~~~~~-----~~~~~~lv~e-y~~~g~L~~~l~~~~--------~~l~~--------------------~~~~~~~~qi  111 (332)
T cd05623          66 LHYAFQ-----DENNLYLVMD-YYVGGDLLTLLSKFE--------DRLPE--------------------DMARFYLAEM  111 (332)
T ss_pred             EEEEEe-----cCCEEEEEEe-ccCCCcHHHHHHHhc--------CCCCH--------------------HHHHHHHHHH
Confidence            999998     7789999999 999999999997632        13444                    4567899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC----------CCCCCCCccccc----CCCCCCchhh
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE----------DGPNNSSPDSNM----DRRQMMIAFD  306 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~----------~~~~Y~APE~l~----~~~~ys~ksD  306 (667)
                      +.||.|||++||+||||||+|||++. ++.+||+|||++..+..          +.+.|+|||++.    +...|+.++|
T Consensus       112 ~~al~~lH~~~iiHrDlkp~Nili~~-~~~~kL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~D  190 (332)
T cd05623         112 VIAIDSVHQLHYVHRDIKPDNILMDM-NGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEDGKGKYGPECD  190 (332)
T ss_pred             HHHHHHHHHCCeEecCCCHHHEEECC-CCCEEEeecchheecccCCcceecccccCccccCHHHHhccccCCCCCCCcCC
Confidence            99999999999999999999999998 89999999999865422          346899999765    2456899999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          307 MRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       307 IWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      ||||||++|||++|++||...            ....   .+..+.......  ........+++++++||.+||..+|+
T Consensus       191 vwSlGvil~ell~g~~Pf~~~------------~~~~---~~~~i~~~~~~~--~~p~~~~~~s~~~~~li~~ll~~~~~  253 (332)
T cd05623         191 WWSLGVCMYEMLYGETPFYAE------------SLVE---TYGKIMNHKERF--QFPAQVTDVSEDAKDLIRRLICSREH  253 (332)
T ss_pred             EEeeHHHHHHHhcCCCCCCCC------------CHHH---HHHHHhCCCccc--cCCCccccCCHHHHHHHHHHccChhh
Confidence            999999999999999999521            1111   111121111000  00112245789999999999976555


Q ss_pred             C--CCCHHHHHcCCCCCCCCCC
Q 005958          387 K--RISCLDALRHPFLCGPRWR  406 (667)
Q Consensus       387 k--RpSa~elL~HPwf~~~~~~  406 (667)
                      +  |++++|+++||||.+..|.
T Consensus       254 r~~r~~~~~~~~h~~f~~~~~~  275 (332)
T cd05623         254 RLGQNGIEDFKQHPFFTGIDWD  275 (332)
T ss_pred             hcCCCCHHHHhCCCCcCCCCHH
Confidence            4  6899999999999998753

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2e-40  Score=354.06  Aligned_cols=243  Identities=17%  Similarity=0.231  Sum_probs=192.3

Q ss_pred             eccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-----HHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEec
Q 005958           94 VSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-----QRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSH  168 (667)
Q Consensus        94 LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-----~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~  168 (667)
                      ||+|+||    +||+|++..     +++.||||++.+...     .....+|..++..+.   .-+||||+++++++.  
T Consensus         1 lG~G~~g----~Vy~~~~~~-----~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~---~~~~p~i~~~~~~~~--   66 (330)
T cd05586           1 IGKGTFG----QVYQVRKKD-----TRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTL---LDESPFIVGLKFSFQ--   66 (330)
T ss_pred             CCCCCce----EEEEEEECC-----CCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhc---cCCCCcCcceEEEEe--
Confidence            7999999    999999987     799999999975321     122345666665541   114999999999998  


Q ss_pred             ccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 005958          169 TTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLH  248 (667)
Q Consensus       169 ~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLH  248 (667)
                         ....+|+||| |+.+|+|.+++...+         .+++                    ..++.++.||+.||+|||
T Consensus        67 ---~~~~~~lv~e-~~~~g~L~~~l~~~~---------~~~~--------------------~~~~~~~~qil~al~~LH  113 (330)
T cd05586          67 ---TDSDLYLVTD-YMSGGELFWHLQKEG---------RFSE--------------------DRAKFYIAELVLALEHLH  113 (330)
T ss_pred             ---cCCeEEEEEc-CCCCChHHHHHHhcC---------CCCH--------------------HHHHHHHHHHHHHHHHHH
Confidence               7789999999 999999999998654         4554                    457789999999999999


Q ss_pred             HCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHHHHHHHHh
Q 005958          249 SHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVL  319 (667)
Q Consensus       249 s~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemlt  319 (667)
                      ++||+||||||+|||++. ++.+||+|||++.....         +.+.|+|||++.+...++.++|||||||++|+|++
T Consensus       114 ~~~ivHrDlkp~Nili~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~ellt  192 (330)
T cd05586         114 KYDIVYRDLKPENILLDA-TGHIALCDFGLSKANLTDNKTTNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCC  192 (330)
T ss_pred             HCCeEeccCCHHHeEECC-CCCEEEecCCcCcCCCCCCCCccCccCCccccCHHHHcCCCCCCCccceeccccEEEEecc
Confidence            999999999999999998 89999999999875322         23679999987766678999999999999999999


Q ss_pred             CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC----CHHHHH
Q 005958          320 RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI----SCLDAL  395 (667)
Q Consensus       320 G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp----Sa~elL  395 (667)
                      |..||..            .......   ..+......     ++ ...+++++++||.+||+.||++||    ++.+++
T Consensus       193 G~~Pf~~------------~~~~~~~---~~i~~~~~~-----~~-~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~ll  251 (330)
T cd05586         193 GWSPFYA------------EDTQQMY---RNIAFGKVR-----FP-KNVLSDEGRQFVKGLLNRNPQHRLGAHRDAVELK  251 (330)
T ss_pred             CCCCCCC------------CCHHHHH---HHHHcCCCC-----CC-CccCCHHHHHHHHHHcCCCHHHCCCCCCCHHHHh
Confidence            9999852            2222221   122111111     11 124678999999999999999998    799999


Q ss_pred             cCCCCCCCCC
Q 005958          396 RHPFLCGPRW  405 (667)
Q Consensus       396 ~HPwf~~~~~  405 (667)
                      +||||....|
T Consensus       252 ~h~~~~~~~~  261 (330)
T cd05586         252 EHPFFADIDW  261 (330)
T ss_pred             cCccccCCCH
Confidence            9999988664

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=5e-40  Score=350.53  Aligned_cols=240  Identities=19%  Similarity=0.259  Sum_probs=191.6

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHH-HHHHhhccCCCCCcceEEEEEE
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEV-LKKLVRRRLMYHSYSMQVHGYV  165 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~i-L~~L~~~~~~~HpnIv~l~~~~  165 (667)
                      +.||+|+||    +||+|.+..     +++.||+|++.+..     ......+|..+ ++.+      +||||+++++++
T Consensus         1 ~~lG~G~~g----~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~------~hp~iv~~~~~~   65 (325)
T cd05604           1 KVIGKGSFG----KVLLAKRKL-----DGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNV------KHPFLVGLHYSF   65 (325)
T ss_pred             CceeeCCCe----EEEEEEECC-----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhC------CCCCCccEEEEE
Confidence            469999999    999999987     79999999997532     22334555544 4555      599999999999


Q ss_pred             EecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHH
Q 005958          166 SSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVN  245 (667)
Q Consensus       166 ~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~  245 (667)
                      .     ..+.+|+||| |+.+|+|..++....         .+++                    ..++.++.||+.||+
T Consensus        66 ~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~~~~~qi~~al~  110 (325)
T cd05604          66 Q-----TTEKLYFVLD-FVNGGELFFHLQRER---------SFPE--------------------PRARFYAAEIASALG  110 (325)
T ss_pred             e-----cCCEEEEEEc-CCCCCCHHHHHHHcC---------CCCH--------------------HHHHHHHHHHHHHHH
Confidence            8     7789999999 999999999987654         4554                    456779999999999


Q ss_pred             HHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHHHHHH
Q 005958          246 YLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAK  316 (667)
Q Consensus       246 yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLye  316 (667)
                      |||++||+||||||+|||++. ++.+||+|||++.....         +.+.|+|||++ ....|+.++|||||||++||
T Consensus       111 ~lH~~givH~Dlkp~NIll~~-~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DvwslG~il~e  188 (325)
T cd05604         111 YLHSINIVYRDLKPENILLDS-QGHVVLTDFGLCKEGIAQSDTTTTFCGTPEYLAPEVI-RKQPYDNTVDWWCLGAVLYE  188 (325)
T ss_pred             HHHHCCeeecCCCHHHeEECC-CCCEEEeecCCcccCCCCCCCcccccCChhhCCHHHH-cCCCCCCcCccccccceehh
Confidence            999999999999999999998 89999999999875321         23679999955 45568999999999999999


Q ss_pred             HHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH----H
Q 005958          317 MVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC----L  392 (667)
Q Consensus       317 mltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa----~  392 (667)
                      |++|.+||..            .+...+.   ......       .....+..+.++.++|.+||+.||.+||++    .
T Consensus       189 l~~G~~pf~~------------~~~~~~~---~~~~~~-------~~~~~~~~~~~~~~ll~~ll~~~p~~R~~~~~~~~  246 (325)
T cd05604         189 MLYGLPPFYC------------RDVAEMY---DNILHK-------PLVLRPGASLTAWSILEELLEKDRQRRLGAKEDFL  246 (325)
T ss_pred             hhcCCCCCCC------------CCHHHHH---HHHHcC-------CccCCCCCCHHHHHHHHHHhccCHHhcCCCCCCHH
Confidence            9999999852            2222221   222211       122334578899999999999999999987    5


Q ss_pred             HHHcCCCCCCCCC
Q 005958          393 DALRHPFLCGPRW  405 (667)
Q Consensus       393 elL~HPwf~~~~~  405 (667)
                      ++++||||....|
T Consensus       247 ~i~~h~~f~~~~~  259 (325)
T cd05604         247 EIQEHPFFESLSW  259 (325)
T ss_pred             HHhcCCCcCCCCH
Confidence            9999999998764

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=2.9e-40  Score=351.05  Aligned_cols=243  Identities=19%  Similarity=0.269  Sum_probs=195.9

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEe
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSS  167 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~  167 (667)
                      +.||+|+||    .||++++...  ..+++.||+|++....    ......+|+++|+++      +||||+++++++. 
T Consensus         2 ~~lg~G~~g----~Vy~~~~~~~--~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~~~~~~~-   68 (318)
T cd05582           2 KVLGQGSFG----KVFLVRKITG--PDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEV------NHPFIVKLHYAFQ-   68 (318)
T ss_pred             ceeeeCCCE----EEEEEEEecc--CCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhC------CCCCcccEEEEEE-
Confidence            679999999    9999987531  1268999999997632    223457899999999      4999999999998 


Q ss_pred             cccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHH
Q 005958          168 HTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYL  247 (667)
Q Consensus       168 ~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yL  247 (667)
                          ..+.+|+||| |+++|+|.+++.+..         .+++                    ..++.++.||+.||.||
T Consensus        69 ----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~l~~--------------------~~~~~~~~qi~~~l~~l  114 (318)
T cd05582          69 ----TEGKLYLILD-FLRGGDLFTRLSKEV---------MFTE--------------------EDVKFYLAELALALDHL  114 (318)
T ss_pred             ----cCCEEEEEEc-CCCCCcHHHHHHHcC---------CCCH--------------------HHHHHHHHHHHHHHHHH
Confidence                7789999999 999999999997643         4554                    45788999999999999


Q ss_pred             HHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHHHHHHH
Q 005958          248 HSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMV  318 (667)
Q Consensus       248 Hs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGviLyeml  318 (667)
                      |++||+||||||+|||++. ++.+||+|||++......         .+.|+|||.+. ...++.++|||||||++|||+
T Consensus       115 H~~~i~H~dlkp~Nil~~~-~~~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~-~~~~~~~~DiwslG~il~el~  192 (318)
T cd05582         115 HSLGIIYRDLKPENILLDE-EGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVN-RRGHTQSADWWSFGVLMFEML  192 (318)
T ss_pred             HHCCEecCCCCHHHeEECC-CCcEEEeeccCCcccCCCCCceecccCChhhcCHHHHc-CCCCCCccceeccceEeeeec
Confidence            9999999999999999998 899999999998765333         36799999554 456899999999999999999


Q ss_pred             hCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC-----HHH
Q 005958          319 LRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS-----CLD  393 (667)
Q Consensus       319 tG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS-----a~e  393 (667)
                      +|+.||..            .........   +...       .......+++++.+||.+||+.||++||+     +.+
T Consensus       193 tg~~p~~~------------~~~~~~~~~---i~~~-------~~~~p~~~~~~~~~li~~~l~~~P~~R~~a~~~~~~~  250 (318)
T cd05582         193 TGSLPFQG------------KDRKETMTM---ILKA-------KLGMPQFLSPEAQSLLRALFKRNPANRLGAGPDGVEE  250 (318)
T ss_pred             cCCCCCCC------------CCHHHHHHH---HHcC-------CCCCCCCCCHHHHHHHHHHhhcCHhHcCCCCCCCHHH
Confidence            99999852            122221111   1111       12233457889999999999999999999     678


Q ss_pred             HHcCCCCCCCCC
Q 005958          394 ALRHPFLCGPRW  405 (667)
Q Consensus       394 lL~HPwf~~~~~  405 (667)
                      +++||||....|
T Consensus       251 ~~~~~~~~~~~~  262 (318)
T cd05582         251 IKRHPFFSTIDW  262 (318)
T ss_pred             HhCCCCcCCCCH
Confidence            999999998764

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.5e-41  Score=340.84  Aligned_cols=256  Identities=22%  Similarity=0.296  Sum_probs=217.7

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCC
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLM  153 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~  153 (667)
                      ....+.+++|+.++.||+|+||    .|-+|+.+.     +++.||+|++++.-     .......|-.+|+..+     
T Consensus       161 ~~~kvTm~dFdfLKvLGkGTFG----KVIL~rEKa-----t~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~-----  226 (516)
T KOG0690|consen  161 RKNKVTMEDFDFLKVLGKGTFG----KVILCREKA-----TGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCR-----  226 (516)
T ss_pred             ccceeccchhhHHHHhcCCccc----eEEEEeecc-----cCceeehhhhhhhheeehHHhhhhhhHHHHHHhcc-----
Confidence            4556789999999999999999    999999998     89999999998732     2233478889999985     


Q ss_pred             CCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHH
Q 005958          154 YHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLI  233 (667)
Q Consensus       154 ~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i  233 (667)
                       ||.+..+.-.|+     ..+.+|+||| |..||.|+-.+.+.+         .|+|.+                    .
T Consensus       227 -HPFLt~LKYsFQ-----t~drlCFVMe-yanGGeLf~HLsrer---------~FsE~R--------------------t  270 (516)
T KOG0690|consen  227 -HPFLTSLKYSFQ-----TQDRLCFVME-YANGGELFFHLSRER---------VFSEDR--------------------T  270 (516)
T ss_pred             -CcHHHHhhhhhc-----cCceEEEEEE-EccCceEeeehhhhh---------cccchh--------------------h
Confidence             999999999999     8899999999 999999999888754         677765                    4


Q ss_pred             HHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCch
Q 005958          234 RLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       234 ~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~k  304 (667)
                      +.|..+|+.||.|||+++||.||||.+|+|++. +|++||+|||+|+.--.         +.|.|.||| ++....|+.+
T Consensus       271 RFYGaEIvsAL~YLHs~~ivYRDlKLENLlLDk-DGHIKitDFGLCKE~I~~g~t~kTFCGTPEYLAPE-VleDnDYgra  348 (516)
T KOG0690|consen  271 RFYGAEIVSALGYLHSRNIVYRDLKLENLLLDK-DGHIKITDFGLCKEEIKYGDTTKTFCGTPEYLAPE-VLEDNDYGRA  348 (516)
T ss_pred             hhhhHHHHHHhhhhhhCCeeeeechhhhheecc-CCceEeeecccchhcccccceeccccCChhhcCch-hhccccccce
Confidence            789999999999999999999999999999999 99999999999985322         238999999 5566679999


Q ss_pred             hhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          305 FDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       305 sDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      +|+|.+||++|||++|+.||.            ..+.+.+.+.+..          ..+.++..++++++.|+..+|.+|
T Consensus       349 VDWWG~GVVMYEMmCGRLPFy------------n~dh~kLFeLIl~----------ed~kFPr~ls~eAktLLsGLL~kd  406 (516)
T KOG0690|consen  349 VDWWGVGVVMYEMMCGRLPFY------------NKDHEKLFELILM----------EDLKFPRTLSPEAKTLLSGLLKKD  406 (516)
T ss_pred             eehhhhhHHHHHHHhccCccc------------ccchhHHHHHHHh----------hhccCCccCCHHHHHHHHHHhhcC
Confidence            999999999999999999995            3334444444422          124455678999999999999999


Q ss_pred             cCCCC-----CHHHHHcCCCCCCCCCCCC
Q 005958          385 PSKRI-----SCLDALRHPFLCGPRWRVD  408 (667)
Q Consensus       385 P~kRp-----Sa~elL~HPwf~~~~~~~~  408 (667)
                      |.+|.     .|.|+.+|+||.+++|...
T Consensus       407 P~kRLGgGpdDakEi~~h~FF~~v~W~~~  435 (516)
T KOG0690|consen  407 PKKRLGGGPDDAKEIMRHRFFASVDWEAT  435 (516)
T ss_pred             hHhhcCCCchhHHHHHhhhhhccCCHHHH
Confidence            99998     4799999999999998544

>PHA03209 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.5e-39  Score=351.90  Aligned_cols=264  Identities=16%  Similarity=0.173  Sum_probs=193.9

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ....+|++++.||+|+||    .||+|++..     +++.||+|+....    ....|+.++++++      ||||++++
T Consensus        63 ~~~~~y~~~~~lg~G~~g----~Vy~~~~~~-----~~~~valK~~~~~----~~~~E~~~l~~l~------h~~iv~~~  123 (357)
T PHA03209         63 VASLGYTVIKTLTPGSEG----RVFVATKPG-----QPDPVVLKIGQKG----TTLIEAMLLQNVN------HPSVIRMK  123 (357)
T ss_pred             hhhcCcEEEEEecCCCCe----EEEEEEECC-----CCceEEEEeCCcc----ccHHHHHHHHhCC------CCCCcChh
Confidence            334679999999999999    999999987     7899999986433    2356999999994      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     .....++||| ++.+ +|.+++....        ..+++                    ..++.|+.||+.
T Consensus       124 ~~~~-----~~~~~~lv~e-~~~~-~l~~~l~~~~--------~~~~~--------------------~~~~~i~~qi~~  168 (357)
T PHA03209        124 DTLV-----SGAITCMVLP-HYSS-DLYTYLTKRS--------RPLPI--------------------DQALIIEKQILE  168 (357)
T ss_pred             heEE-----eCCeeEEEEE-ccCC-cHHHHHHhcc--------CCCCH--------------------HHHHHHHHHHHH
Confidence            9998     7788999999 8876 9999987542        13443                    457889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC--------CCCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE--------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~--------~~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      ||.|||++||+||||||+|||++. ++.+||+|||++.....        +...|+|||++. ...|+.++|||||||++
T Consensus       169 aL~~LH~~~ivHrDlkp~Nill~~-~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwSlGvvl  246 (357)
T PHA03209        169 GLRYLHAQRIIHRDVKTENIFIND-VDQVCIGDLGAAQFPVVAPAFLGLAGTVETNAPEVLA-RDKYNSKADIWSAGIVL  246 (357)
T ss_pred             HHHHHHHCCeecCCCCHHHEEECC-CCCEEEecCccccccccCcccccccccccccCCeecC-CCCCCchhhHHHHHHHH
Confidence            999999999999999999999998 89999999999974321        236799999654 45689999999999999


Q ss_pred             HHHHhCC-CCChhh------------hhhhhhhhccCCChhHHH-----HHHHHHhc----cCCCCCCCCcccccCCCHH
Q 005958          315 AKMVLRE-LMDPLI------------FTKFKSFLTKGIDPSCLR-----EFLLQVLN----RNSSSGNTGFQILDRNWGA  372 (667)
Q Consensus       315 yemltG~-~PF~~~------------~~~~~~~~~~g~~~~~l~-----~~~~~~~~----~~~~~~~~~~~~~~~~s~e  372 (667)
                      |||+++. ++|...            .++.......+..+..+.     ......+.    ...+..........+.+.+
T Consensus       247 ~ell~~~~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (357)
T PHA03209        247 FEMLAYPSTIFEDPPSTPEEYVKSCHSHLLKIISTLKVHPEEFPRDPGSRLVRGFIEYASLERQPYTRYPCFQRVNLPID  326 (357)
T ss_pred             HHHHHcCCccccCCCCcHHHHHHHHHHHHHHHHHHhccChhhcCCCCccHHHHHHHhhcccCCCcccccHHHhccCCCch
Confidence            9999854 444321            111111111121111100     00000000    0000000000011245678


Q ss_pred             HHHHHHHhhhcCcCCCCCHHHHHcCCCCCC
Q 005958          373 GWNLLSLLLATKPSKRISCLDALRHPFLCG  402 (667)
Q Consensus       373 ~~dLI~~~L~~DP~kRpSa~elL~HPwf~~  402 (667)
                      +.+||.+||++||++||||.|+|+||||+.
T Consensus       327 ~~~li~~mL~~dP~~Rpta~e~l~hp~f~~  356 (357)
T PHA03209        327 GEFLVHKMLTFDAAMRPSAEEILNYPMFAQ  356 (357)
T ss_pred             HHHHHHHHHcCCcccCcCHHHHhcCchhcc
Confidence            899999999999999999999999999986

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=2.5e-39  Score=337.04  Aligned_cols=245  Identities=16%  Similarity=0.164  Sum_probs=193.1

Q ss_pred             eccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEec
Q 005958           94 VSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSH  168 (667)
Q Consensus        94 LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~  168 (667)
                      ||+|+||    .||++.++.     +++.||+|.+....     .......|+++++++      +||||+++++++.  
T Consensus         1 lg~G~~g----~Vy~~~~~~-----~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l------~hp~i~~~~~~~~--   63 (277)
T cd05607           1 LGKGGFG----EVCAVQVKN-----TGKMYACKKLDKKRLKKKSGEKMALLEKEILEKV------NSPFIVNLAYAFE--   63 (277)
T ss_pred             CCCCCce----EEEEEEEcc-----CCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhc------CCCcEEEEEEEEe--
Confidence            7999999    999999998     79999999986422     123446799999999      4999999999998  


Q ss_pred             ccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 005958          169 TTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLH  248 (667)
Q Consensus       169 ~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLH  248 (667)
                         ....+|+||| |+++|+|.+++.....       ..+++                    ..+..++.||+.||+|||
T Consensus        64 ---~~~~~~lv~e-~~~g~~L~~~~~~~~~-------~~~~~--------------------~~~~~~~~qi~~al~~lH  112 (277)
T cd05607          64 ---SKTHLCLVMS-LMNGGDLKYHIYNVGE-------RGLEM--------------------ERVIHYSAQITCGILHLH  112 (277)
T ss_pred             ---cCCeEEEEEe-cCCCCCHHHHHHhccc-------cCCCH--------------------HHHHHHHHHHHHHHHHHH
Confidence               7789999999 9999999998865431       12333                    456779999999999999


Q ss_pred             HCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC--------CCCCCCCcccccCCCCCCchhhHHHHHHHHHHHHhC
Q 005958          249 SHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE--------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLR  320 (667)
Q Consensus       249 s~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~--------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG  320 (667)
                      +.||+||||||+||+++. ++.++|+|||++.....        +...|+|||++.+. .++.++||||+||++|||++|
T Consensus       113 ~~~ivH~dikp~Nili~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~DvwslGv~l~el~~g  190 (277)
T cd05607         113 SMDIVYRDMKPENVLLDD-QGNCRLSDLGLAVELKDGKTITQRAGTNGYMAPEILKEE-PYSYPVDWFAMGCSIYEMVAG  190 (277)
T ss_pred             HCCEEEccCChHhEEEcC-CCCEEEeeceeeeecCCCceeeccCCCCCccCHHHHccC-CCCCchhHHHHHHHHHHHHhC
Confidence            999999999999999998 89999999999876543        23689999966544 499999999999999999999


Q ss_pred             CCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH----HHHHc
Q 005958          321 ELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC----LDALR  396 (667)
Q Consensus       321 ~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa----~elL~  396 (667)
                      ++||.....           .....+...........      .....+++++++||.+||++||++||++    ++++.
T Consensus       191 ~~p~~~~~~-----------~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~~~~  253 (277)
T cd05607         191 RTPFKDHKE-----------KVAKEELKRRTLEDEVK------FEHQNFTEESKDICRLFLAKKPEDRLGSREKNDDPRK  253 (277)
T ss_pred             CCCCCCCcc-----------hhhHHHHHHHhhccccc------cccccCCHHHHHHHHHHhccCHhhCCCCccchhhhhc
Confidence            999852110           00111111122211111      0123578899999999999999999999    67889


Q ss_pred             CCCCCCCCC
Q 005958          397 HPFLCGPRW  405 (667)
Q Consensus       397 HPwf~~~~~  405 (667)
                      ||||+...|
T Consensus       254 h~~f~~~~~  262 (277)
T cd05607         254 HEFFKTINF  262 (277)
T ss_pred             ChhhcCCCH
Confidence            999998765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=1.2e-39  Score=347.60  Aligned_cols=240  Identities=20%  Similarity=0.247  Sum_probs=191.5

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-----HHHHHHHHHH-HHHHhhccCCCCCcceEEEEEE
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-----QRRGRRAIEV-LKKLVRRRLMYHSYSMQVHGYV  165 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-----~~~~~rEi~i-L~~L~~~~~~~HpnIv~l~~~~  165 (667)
                      +.||+|+||    +||+|++..     +++.||+|++.....     .....+|... ++.+      .||||+++++++
T Consensus         1 ~~lg~G~fg----~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~------~h~~Iv~~~~~~   65 (325)
T cd05602           1 KVIGKGSFG----KVLLARHKA-----EEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNV------KHPFLVGLHFSF   65 (325)
T ss_pred             CeeeeCCCe----EEEEEEECC-----CCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhC------CCCCCCceeEEE
Confidence            479999999    999999987     789999999975321     1233444443 4555      599999999999


Q ss_pred             EecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHH
Q 005958          166 SSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVN  245 (667)
Q Consensus       166 ~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~  245 (667)
                      .     ..+.+|+||| |+++|+|.+++...+         .+.+                    ..++.++.||+.||.
T Consensus        66 ~-----~~~~~~lv~e-~~~~~~L~~~~~~~~---------~~~~--------------------~~~~~~~~qi~~~L~  110 (325)
T cd05602          66 Q-----TADKLYFVLD-YINGGELFYHLQRER---------CFLE--------------------PRARFYAAEIASALG  110 (325)
T ss_pred             E-----cCCeEEEEEe-CCCCCcHHHHHHhcC---------CCCH--------------------HHHHHHHHHHHHHHH
Confidence            8     7789999999 999999999998654         4444                    346779999999999


Q ss_pred             HHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHHHHHH
Q 005958          246 YLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAK  316 (667)
Q Consensus       246 yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLye  316 (667)
                      |||++||+||||||+|||++. ++.+||+|||+++....         +.+.|+|||++. ...|+.++|||||||++||
T Consensus       111 ~lH~~giiHrDlkp~Nili~~-~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwslG~il~e  188 (325)
T cd05602         111 YLHSLNIVYRDLKPENILLDS-QGHIVLTDFGLCKENIEHNGTTSTFCGTPEYLAPEVLH-KQPYDRTVDWWCLGAVLYE  188 (325)
T ss_pred             HHHHCCeEecCCCHHHeEECC-CCCEEEccCCCCcccccCCCCcccccCCccccCHHHHc-CCCCCCccccccccHHHHH
Confidence            999999999999999999998 89999999999875321         236899999554 5568999999999999999


Q ss_pred             HHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHH----
Q 005958          317 MVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCL----  392 (667)
Q Consensus       317 mltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~----  392 (667)
                      |++|.+||..            ........   .+...       .....+.+++++.+||.+||+.||.+|+++.    
T Consensus       189 l~~g~~pf~~------------~~~~~~~~---~i~~~-------~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~  246 (325)
T cd05602         189 MLYGLPPFYS------------RNTAEMYD---NILNK-------PLQLKPNITNSARHLLEGLLQKDRTKRLGAKDDFM  246 (325)
T ss_pred             HhcCCCCCCC------------CCHHHHHH---HHHhC-------CcCCCCCCCHHHHHHHHHHcccCHHHCCCCCCCHH
Confidence            9999999852            22222211   12111       1223456789999999999999999999876    


Q ss_pred             HHHcCCCCCCCCC
Q 005958          393 DALRHPFLCGPRW  405 (667)
Q Consensus       393 elL~HPwf~~~~~  405 (667)
                      ++++|+||....|
T Consensus       247 ~i~~~~~~~~~~~  259 (325)
T cd05602         247 EIKNHIFFSPINW  259 (325)
T ss_pred             HHhcCcccCCCCH
Confidence            8999999988776

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=100.00  E-value=4.1e-39  Score=340.16  Aligned_cols=274  Identities=20%  Similarity=0.254  Sum_probs=205.5

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh----HHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA----QRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~----~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      .+++|++.+.||.|+||    .||+|.+..     +++.||+|.+.....    .....+|+.++++++      |+||+
T Consensus         5 ~~~~y~~~~~ig~g~~~----~v~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~------h~~i~   69 (309)
T cd07845           5 SVTEFEKLNRIGEGTYG----IVYRARDTT-----SGEIVALKKVRMDNERDGIPISSLREITLLLNLR------HPNIV   69 (309)
T ss_pred             cccceeEeeeeeecCCE----EEEEEEECC-----CCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCC------CCCCc
Confidence            46889999999999999    999999987     799999999874321    223568999999995      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++...   ..+.+++||| |+++ +|.+++....        ..+++                    ..++.++.|
T Consensus        70 ~~~~~~~~~---~~~~~~lv~e-~~~~-~l~~~l~~~~--------~~l~~--------------------~~~~~~~~q  116 (309)
T cd07845          70 ELKEVVVGK---HLDSIFLVME-YCEQ-DLASLLDNMP--------TPFSE--------------------SQVKCLMLQ  116 (309)
T ss_pred             ceEEEEecC---CCCeEEEEEe-cCCC-CHHHHHHhcc--------cCCCH--------------------HHHHHHHHH
Confidence            999999733   3467899999 9987 9999987632        13444                    457889999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      |+.||.|||++||+||||||+||+++. ++.+||+|||.+......         ...|+|||.+.+...++.++||||+
T Consensus       117 i~~~l~~lH~~~i~H~dl~p~nil~~~-~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dvwsl  195 (309)
T cd07845         117 LLRGLQYLHENFIIHRDLKVSNLLLTD-KGCLKIADFGLARTYGLPAKPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAV  195 (309)
T ss_pred             HHHHHHHHHhCCeecCCCCHHHEEECC-CCCEEECccceeeecCCccCCCCcccccccccChhhhcCCCCcCchHHHHHH
Confidence            999999999999999999999999998 899999999999866532         2459999977776778999999999


Q ss_pred             HHHHHHHHhCCCCChhhh---hhhhhhhccCCChhHHHHHHHHHh-ccCCCCCCC---Cc-ccccCCCHHHHHHHHHhhh
Q 005958          311 GFMMAKMVLRELMDPLIF---TKFKSFLTKGIDPSCLREFLLQVL-NRNSSSGNT---GF-QILDRNWGAGWNLLSLLLA  382 (667)
Q Consensus       311 GviLyemltG~~PF~~~~---~~~~~~~~~g~~~~~l~~~~~~~~-~~~~~~~~~---~~-~~~~~~s~e~~dLI~~~L~  382 (667)
                      ||++|||++|++||....   ....+....+.+.......+.... .........   .. ......++++.+||.+||+
T Consensus       196 G~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~  275 (309)
T cd07845         196 GCILAELLAHKPLLPGKSEIEQLDLIIQLLGTPNESIWPGFSDLPLVGKFTLPKQPYNNLKHKFPWLSEAGLRLLNFLLM  275 (309)
T ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChhhchhhhcccccccccccCCCCCchHHhccccCHHHHHHHHHHhc
Confidence            999999999999996321   111111122222211111000000 000000000   00 1123358899999999999


Q ss_pred             cCcCCCCCHHHHHcCCCCCCCCCC
Q 005958          383 TKPSKRISCLDALRHPFLCGPRWR  406 (667)
Q Consensus       383 ~DP~kRpSa~elL~HPwf~~~~~~  406 (667)
                      +||++|||+.|+|+||||.+....
T Consensus       276 ~dp~~R~t~~~il~h~~f~~~~~~  299 (309)
T cd07845         276 YDPKKRATAEEALESSYFKEKPLP  299 (309)
T ss_pred             CChhhCcCHHHHhcChhhccCCCC
Confidence            999999999999999999876644

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-42  Score=345.05  Aligned_cols=249  Identities=19%  Similarity=0.246  Sum_probs=217.0

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYV  165 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~  165 (667)
                      +-|.++++||+|+||    .||+|.|+.     +|+.+|||.+....+.+++..||.||+++.      .|++|++||.|
T Consensus        33 EVFDi~~KLGEGSYG----SV~KAIH~E-----sG~v~AIK~VPV~sDLQEIIKEISIMQQC~------S~yVVKYYGSY   97 (502)
T KOG0574|consen   33 EVFDIVGKLGEGSYG----SVHKAIHRE-----SGHVLAIKKVPVDTDLQEIIKEISIMQQCK------SKYVVKYYGSY   97 (502)
T ss_pred             HHHHHHHHhcCCcch----HHHHHHHhc-----cCcEEEEEecCccchHHHHHHHHHHHHHcC------Cchhhhhhhhh
Confidence            347889999999999    999999998     899999999998888889999999999995      99999999999


Q ss_pred             EecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHH
Q 005958          166 SSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVN  245 (667)
Q Consensus       166 ~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~  245 (667)
                      .     ....+||||| ||+.|++.++++.++        .+|+|.                    .|..+++..+.||+
T Consensus        98 F-----K~sDLWIVME-YCGAGSiSDI~R~R~--------K~L~E~--------------------EIs~iL~~TLKGL~  143 (502)
T KOG0574|consen   98 F-----KHSDLWIVME-YCGAGSISDIMRARR--------KPLSEQ--------------------EISAVLRDTLKGLQ  143 (502)
T ss_pred             c-----cCCceEeehh-hcCCCcHHHHHHHhc--------CCccHH--------------------HHHHHHHHHHhHHH
Confidence            8     7889999999 999999999998754        266664                    57889999999999


Q ss_pred             HHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHHHHHH
Q 005958          246 YLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAK  316 (667)
Q Consensus       246 yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLye  316 (667)
                      |||...-||||||..|||++. +|+.||+|||.|..+..         +.|.|||||++. .-.|+.++||||||++..|
T Consensus       144 YLH~~~KIHRDIKAGNILLNT-~G~AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI~-EIGY~~~ADIWSLGITaIE  221 (502)
T KOG0574|consen  144 YLHDLKKIHRDIKAGNILLNT-DGIAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIE-EIGYDTKADIWSLGITAIE  221 (502)
T ss_pred             HHHHHHHHHhhcccccEEEcc-cchhhhhhccccchhhhhHHhhCccccCcccccHHHHH-HhccchhhhHhhhcchhhh
Confidence            999999999999999999999 99999999999976653         348999999554 4559999999999999999


Q ss_pred             HHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHc
Q 005958          317 MVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALR  396 (667)
Q Consensus       317 mltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~  396 (667)
                      |..|+|||.++..+-.+|-..-.++.                   .+..+..+|.++-|||++||.++|++|-||.++++
T Consensus       222 MAEG~PPYsDIHPMRAIFMIPT~PPP-------------------TF~KPE~WS~~F~DFi~~CLiK~PE~R~TA~~L~~  282 (502)
T KOG0574|consen  222 MAEGRPPYSDIHPMRAIFMIPTKPPP-------------------TFKKPEEWSSEFNDFIRSCLIKKPEERKTALRLCE  282 (502)
T ss_pred             hhcCCCCcccccccceeEeccCCCCC-------------------CCCChHhhhhHHHHHHHHHhcCCHHHHHHHHHHhh
Confidence            99999999987776666544333331                   22334456789999999999999999999999999


Q ss_pred             CCCCCCCC
Q 005958          397 HPFLCGPR  404 (667)
Q Consensus       397 HPwf~~~~  404 (667)
                      |||++...
T Consensus       283 H~FiknA~  290 (502)
T KOG0574|consen  283 HTFIKNAP  290 (502)
T ss_pred             hhhhcCCC
Confidence            99998865

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=100.00  E-value=2e-39  Score=347.10  Aligned_cols=254  Identities=17%  Similarity=0.206  Sum_probs=199.5

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ++|++.+.||+|+||    .||+|++..     +++.||+|++.+..     ....+.+|+.++..+      .|+||++
T Consensus         1 d~y~i~~~lG~G~fg----~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~------~~~~i~~   65 (331)
T cd05624           1 DDFEIIKVIGRGAFG----EVAVVKMKH-----TERIYAMKILNKWEMLKRAETACFREERNVLVNG------DCQWITT   65 (331)
T ss_pred             CCceEEEEEeeCCCe----EEEEEEECC-----CCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhC------CCCCEee
Confidence            579999999999999    999999987     78999999997522     123357788888888      4999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     +.+..|+||| |+.+|+|.+++.+..        ..+++                    ..++.++.||
T Consensus        66 l~~~~~-----~~~~~~lv~E-y~~gg~L~~~l~~~~--------~~l~~--------------------~~~~~~~~qi  111 (331)
T cd05624          66 LHYAFQ-----DENYLYLVMD-YYVGGDLLTLLSKFE--------DRLPE--------------------DMARFYIAEM  111 (331)
T ss_pred             EEEEEE-----cCCEEEEEEe-CCCCCcHHHHHHHhc--------CCCCH--------------------HHHHHHHHHH
Confidence            999998     7889999999 999999999998632        13454                    4567799999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC----------CCCCCCCcccccCC----CCCCchhh
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE----------DGPNNSSPDSNMDR----RQMMIAFD  306 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~----------~~~~Y~APE~l~~~----~~ys~ksD  306 (667)
                      +.||+|||++||+||||||+|||++. ++.+||+|||++.....          +.+.|+|||++.+.    ..++.++|
T Consensus       112 ~~~L~~lH~~~iiHrDlkp~Nill~~-~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~D  190 (331)
T cd05624         112 VLAIHSIHQLHYVHRDIKPDNVLLDM-NGHIRLADFGSCLKMNQDGTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECD  190 (331)
T ss_pred             HHHHHHHHHCCeeeccCchHHEEEcC-CCCEEEEeccceeeccCCCceeeccccCCcccCCHHHHhccccCCCCCCCccc
Confidence            99999999999999999999999998 89999999999875432          33679999966432    45789999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          307 MRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       307 IWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      |||+||++|||++|+.||...            +...   ....+.......  ........+++++++||.+||..+++
T Consensus       191 iwSlGvil~ell~g~~Pf~~~------------~~~~---~~~~i~~~~~~~--~~p~~~~~~~~~~~~li~~ll~~~~~  253 (331)
T cd05624         191 WWSLGVCMYEMLYGETPFYAE------------SLVE---TYGKIMNHEERF--QFPSHITDVSEEAKDLIQRLICSRER  253 (331)
T ss_pred             EEeeehhhhhhhhCCCCccCC------------CHHH---HHHHHHcCCCcc--cCCCccccCCHHHHHHHHHHccCchh
Confidence            999999999999999998521            1111   111121111000  00112245689999999999997665


Q ss_pred             C--CCCHHHHHcCCCCCCCCCC
Q 005958          387 K--RISCLDALRHPFLCGPRWR  406 (667)
Q Consensus       387 k--RpSa~elL~HPwf~~~~~~  406 (667)
                      +  |++++++++||||++..|.
T Consensus       254 ~~~~~~~~~~~~h~~f~~~~~~  275 (331)
T cd05624         254 RLGQNGIEDFKKHAFFEGIDWE  275 (331)
T ss_pred             hcCCCCHHHHhcCCCcCCCCHH
Confidence            5  5799999999999987753

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=1.5e-39  Score=345.97  Aligned_cols=240  Identities=20%  Similarity=0.255  Sum_probs=191.4

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-----HHHHHHHHH-HHHHHhhccCCCCCcceEEEEEE
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-----QRRGRRAIE-VLKKLVRRRLMYHSYSMQVHGYV  165 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-----~~~~~rEi~-iL~~L~~~~~~~HpnIv~l~~~~  165 (667)
                      +.||+|+||    .||+|++..     +++.||+|++.+...     ...+.+|+. +++.+      .||||+++++++
T Consensus         1 ~~lg~G~~g----~Vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~------~h~~iv~~~~~~   65 (321)
T cd05603           1 KVIGKGSFG----KVLLAKRKS-----DGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNL------KHPFLVGLHYSF   65 (321)
T ss_pred             CeeeeCCCE----EEEEEEECC-----CCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhC------CCCCccceeeEE
Confidence            479999999    999999987     789999999975321     223445554 45666      599999999999


Q ss_pred             EecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHH
Q 005958          166 SSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVN  245 (667)
Q Consensus       166 ~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~  245 (667)
                      .     +.+..|+||| |+++|+|.+++....         .+++                    ..++.++.||+.||.
T Consensus        66 ~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~~~~~qi~~~L~  110 (321)
T cd05603          66 Q-----TAEKLYFVLD-YVNGGELFFHLQRER---------CFLE--------------------PRARFYAAEVASAIG  110 (321)
T ss_pred             E-----cCCEEEEEEc-CCCCCCHHHHHHHcC---------CCCH--------------------HHHHHHHHHHHHHHH
Confidence            8     7789999999 999999999887643         4454                    346779999999999


Q ss_pred             HHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHHHHHH
Q 005958          246 YLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAK  316 (667)
Q Consensus       246 yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLye  316 (667)
                      |||++||+||||||+|||++. ++.+||+|||++.....         +.+.|+|||.+ ....++.++|||||||++||
T Consensus       111 ~lH~~~ivH~Dlkp~NIll~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DiwslG~il~e  188 (321)
T cd05603         111 YLHSLNIIYRDLKPENILLDS-QGHVVLTDFGLCKEGVEPEETTSTFCGTPEYLAPEVL-RKEPYDRTVDWWCLGAVLYE  188 (321)
T ss_pred             HHHHCCeEeccCCHHHeEECC-CCCEEEccCCCCccCCCCCCccccccCCcccCCHHHh-cCCCCCCcCcccccchhhhh
Confidence            999999999999999999998 89999999999875321         23679999965 45568999999999999999


Q ss_pred             HHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH----H
Q 005958          317 MVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC----L  392 (667)
Q Consensus       317 mltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa----~  392 (667)
                      |++|.+||..            .+...+.+   .+...       .....+..+.++.++|.+||+.||.+|+++    .
T Consensus       189 l~~g~~pf~~------------~~~~~~~~---~i~~~-------~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~  246 (321)
T cd05603         189 MLYGLPPFYS------------RDVSQMYD---NILHK-------PLQLPGGKTVAACDLLVGLLHKDQRRRLGAKADFL  246 (321)
T ss_pred             hhcCCCCCCC------------CCHHHHHH---HHhcC-------CCCCCCCCCHHHHHHHHHHccCCHhhcCCCCCCHH
Confidence            9999999852            22222222   22221       122345678899999999999999999976    4


Q ss_pred             HHHcCCCCCCCCC
Q 005958          393 DALRHPFLCGPRW  405 (667)
Q Consensus       393 elL~HPwf~~~~~  405 (667)
                      ++++||||....|
T Consensus       247 ~~~~~~~~~~~~~  259 (321)
T cd05603         247 EIKNHVFFSPINW  259 (321)
T ss_pred             HHhCCCCcCCCCH
Confidence            9999999988764

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=100.00  E-value=3.5e-39  Score=337.52  Aligned_cols=251  Identities=15%  Similarity=0.201  Sum_probs=199.5

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      .|++.+.||+|+||    .||+|.+..     +++.||||.+....     ......+|+.+++.++      |+||+.+
T Consensus         1 ~f~~~~~ig~G~~g----~v~~~~~~~-----~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~------~~~i~~~   65 (285)
T cd05630           1 TFRQYRVLGKGGFG----EVCACQVRA-----TGKMYACKKLEKKRIKKRKGESMALNEKQILEKVN------SRFVVSL   65 (285)
T ss_pred             CceeeEEeecCCCe----EEEEEEEcC-----CCceEEEEEEehhhccchHHHHHHHHHHHHHHhCC------CCCeeee
Confidence            47889999999999    999999998     89999999986532     1234578999999994      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++.+.     ..+..|+||| |+++|+|.+++.....       ..+++                    ..+..++.|++
T Consensus        66 ~~~~~-----~~~~~~lv~e-~~~g~~L~~~l~~~~~-------~~l~~--------------------~~~~~~~~qi~  112 (285)
T cd05630          66 AYAYE-----TKDALCLVLT-LMNGGDLKFHIYHMGE-------AGFEE--------------------GRAVFYAAEIC  112 (285)
T ss_pred             eEEEe-----cCCEEEEEEE-ecCCCcHHHHHHHhcc-------cCCCH--------------------HHHHHHHHHHH
Confidence            99998     7789999999 9999999999865321       13444                    45778999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC--------CCCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE--------DGPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~--------~~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      .||.|||++||+||||||+||+++. ++.++|+|||++.....        +...|+|||.+. ...++.++||||+||+
T Consensus       113 ~~l~~lH~~~iiH~dikp~Nil~~~-~~~~~l~Dfg~~~~~~~~~~~~~~~g~~~y~aPE~~~-~~~~~~~~DiwslG~~  190 (285)
T cd05630         113 CGLEDLHQERIVYRDLKPENILLDD-HGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVK-NERYTFSPDWWALGCL  190 (285)
T ss_pred             HHHHHHHhCCEEeCCCCHHHEEECC-CCCEEEeeccceeecCCCccccCCCCCccccChHHHc-CCCCCCccccHHHHHH
Confidence            9999999999999999999999998 88999999999875432        236799999654 4568999999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC---
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS---  390 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS---  390 (667)
                      +|+|++|++||.......        ............    .      .......++++++||.+||+.||++|||   
T Consensus       191 l~~l~~g~~Pf~~~~~~~--------~~~~~~~~~~~~----~------~~~~~~~~~~~~~li~~~l~~~p~~R~s~~~  252 (285)
T cd05630         191 LYEMIAGQSPFQQRKKKI--------KREEVERLVKEV----Q------EEYSEKFSPDARSLCKMLLCKDPKERLGCQG  252 (285)
T ss_pred             HHHHHhCCCCCCCCCccc--------hHHHHHhhhhhh----h------hhcCccCCHHHHHHHHHHhhcCHHHccCCCC
Confidence            999999999996321100        001111111110    0      1123457789999999999999999999   


Q ss_pred             --HHHHHcCCCCCCCCC
Q 005958          391 --CLDALRHPFLCGPRW  405 (667)
Q Consensus       391 --a~elL~HPwf~~~~~  405 (667)
                        ++|+++||||++..|
T Consensus       253 ~~~~~~~~h~~~~~~~~  269 (285)
T cd05630         253 GGAREVKEHPLFKQINF  269 (285)
T ss_pred             CchHHHHcChhhhccCH
Confidence              999999999988653

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-40  Score=343.54  Aligned_cols=280  Identities=21%  Similarity=0.221  Sum_probs=215.5

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-HHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-QRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      ..+..++|++.+.+|+|+||    .|-.|.+..     ++..||||+++.-.. .+..+-|+++|+++....--+---+|
T Consensus        84 gD~l~~Ry~i~~~lGeGtFG----kV~ec~D~~-----~~~~vAlKIik~V~kYreAa~iEi~vLqki~~~DP~g~~rcv  154 (415)
T KOG0671|consen   84 GDILTNRYEIVDLLGEGTFG----KVVECWDRE-----TKEHVALKIIKNVDKYREAALIEIEVLQKINESDPNGKFRCV  154 (415)
T ss_pred             ccccccceehhhhhcCCccc----ceEEEeecC-----CCceehHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCceEEE
Confidence            34556899999999999999    999999998     789999999986433 34457899999999532111222478


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++.+||.     -.++.|||+| .++- |++++|+.++.                           .+.|+.+|+.+++|
T Consensus       155 ~m~~wFd-----yrghiCivfe-llG~-S~~dFlk~N~y---------------------------~~fpi~~ir~m~~Q  200 (415)
T KOG0671|consen  155 QMRDWFD-----YRGHICIVFE-LLGL-STFDFLKENNY---------------------------IPFPIDHIRHMGYQ  200 (415)
T ss_pred             eeehhhh-----ccCceEEEEe-ccCh-hHHHHhccCCc---------------------------cccchHHHHHHHHH
Confidence            8889998     8899999999 9988 99999998653                           23456899999999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcC-------------------CCCeEEEeeecccccccCCC------CCCCCccc
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISP-------------------VDRHIKVGILGNAADFYEDG------PNNSSPDS  294 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~-------------------~~~~vKL~DFGlA~~~~~~~------~~Y~APE~  294 (667)
                      |+.+++|||+.+|+|.||||||||+.+                   .+..|+|+|||.|.......      ..|+|||+
T Consensus       201 L~~sv~fLh~~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~ks~~I~vIDFGsAtf~~e~hs~iVsTRHYRAPEV  280 (415)
T KOG0671|consen  201 LLESVAFLHDLKLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPLKSTAIKVIDFGSATFDHEHHSTIVSTRHYRAPEV  280 (415)
T ss_pred             HHHHHHHHHhcceeecCCChheEEEeccceEEEeccCCccceeccCCCcceEEEecCCcceeccCcceeeeccccCCchh
Confidence            999999999999999999999999863                   13369999999998766543      78999998


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHhCCCCChh---hhhhhhhhhccCCChhHHHHHH------HHHhccCCCCCCCC---
Q 005958          295 NMDRRQMMIAFDMRCVGFMMAKMVLRELMDPL---IFTKFKSFLTKGIDPSCLREFL------LQVLNRNSSSGNTG---  362 (667)
Q Consensus       295 l~~~~~ys~ksDIWSLGviLyemltG~~PF~~---~~~~~~~~~~~g~~~~~l~~~~------~~~~~~~~~~~~~~---  362 (667)
                      +++-+ ++.++||||+||||+|+++|..+|+.   .+++..+....|..|..+....      ....-.++.....+   
T Consensus       281 iLgLG-wS~pCDvWSiGCIL~ElytG~~LFqtHen~EHLaMMerIlGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k  359 (415)
T KOG0671|consen  281 ILGLG-WSQPCDVWSIGCILVELYTGETLFQTHENLEHLAMMERILGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSK  359 (415)
T ss_pred             eeccC-cCCccCceeeeeEEEEeeccceecccCCcHHHHHHHHHhhCCCcHHHhhhhhhHhhhhcccccCccccccccch
Confidence            88765 99999999999999999999999984   3455555667776665543322      11100111100000   


Q ss_pred             -----c-------ccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          363 -----F-------QILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       363 -----~-------~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                           .       ...+....++.|||++||.+||.+|+|+.|+|.||||+...
T Consensus       360 ~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~RiTl~EAL~HpFF~~~~  413 (415)
T KOG0671|consen  360 YVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFDPARRITLREALSHPFFARLT  413 (415)
T ss_pred             hhhcCCccHHHHhccCcHHHhHHHHHHHHHHccCccccccHHHHhcCHHhhcCC
Confidence                 0       00111223688999999999999999999999999998754

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=100.00  E-value=8.7e-39  Score=332.13  Aligned_cols=264  Identities=20%  Similarity=0.283  Sum_probs=200.3

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ++|++.+.||+|+||    .||+|.+..     +++.||+|++....    ..+.+.+|+++++.++      ||||+++
T Consensus         1 ~~y~~~~~l~~g~~~----~v~~~~~~~-----~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~------h~~i~~~   65 (286)
T cd07847           1 EKYEKLSKIGEGSYG----VVFKCRNRE-----TGQIVAIKKFVESEDDPVIKKIALREIRMLKQLK------HPNLVNL   65 (286)
T ss_pred             CceeeeeeecccCCe----EEEEEEECC-----CCcEEEEEEEeecccCccccHHHHHHHHHHHhCC------CCCEeee
Confidence            579999999999999    999999987     78999999986432    2245678999999994      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     .....++||| |++++.|..++....         .+++                    ..++.++.||+
T Consensus        66 ~~~~~-----~~~~~~~v~e-~~~~~~l~~~~~~~~---------~~~~--------------------~~~~~~~~ql~  110 (286)
T cd07847          66 IEVFR-----RKRKLHLVFE-YCDHTVLNELEKNPR---------GVPE--------------------HLIKKIIWQTL  110 (286)
T ss_pred             eeEEe-----eCCEEEEEEe-ccCccHHHHHHhCCC---------CCCH--------------------HHHHHHHHHHH
Confidence            99998     7789999999 999978877765432         3444                    45788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC---------CCCCCcccccCCCCCCchhhHHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG---------PNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~---------~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      .||.|||++||+||||||+||+++. ++.+||+|||++.......         ..|+|||.+.+...++.++||||+||
T Consensus       111 ~~l~~LH~~~i~H~dl~p~nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~  189 (286)
T cd07847         111 QAVNFCHKHNCIHRDVKPENILITK-QGQIKLCDFGFARILTGPGDDYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGC  189 (286)
T ss_pred             HHHHHHHHCCceecCCChhhEEEcC-CCcEEECccccceecCCCcccccCcccccccCCHHHHhCCCCcCchhhhHHHHH
Confidence            9999999999999999999999998 8999999999998654332         57999997766677899999999999


Q ss_pred             HHHHHHhCCCCChhhh---hhhhhhhccCCChhHHHHHHHH-----HhccCCCCCCCC-cccccCCCHHHHHHHHHhhhc
Q 005958          313 MMAKMVLRELMDPLIF---TKFKSFLTKGIDPSCLREFLLQ-----VLNRNSSSGNTG-FQILDRNWGAGWNLLSLLLAT  383 (667)
Q Consensus       313 iLyemltG~~PF~~~~---~~~~~~~~~g~~~~~l~~~~~~-----~~~~~~~~~~~~-~~~~~~~s~e~~dLI~~~L~~  383 (667)
                      ++|+|++|++||.+..   ....+....+.......+....     ......+..... ....+..+..+.+||.+||++
T Consensus       190 i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  269 (286)
T cd07847         190 VFAELLTGQPLWPGKSDVDQLYLIRKTLGDLIPRHQQIFSTNQFFKGLSIPEPETREPLESKFPNISSPALSFLKGCLQM  269 (286)
T ss_pred             HHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcccccccccccCCCcccccCHHHHhccCCHHHHHHHHHHhcC
Confidence            9999999999997322   1111111111111110000000     000000000000 012345688999999999999


Q ss_pred             CcCCCCCHHHHHcCCCC
Q 005958          384 KPSKRISCLDALRHPFL  400 (667)
Q Consensus       384 DP~kRpSa~elL~HPwf  400 (667)
                      ||++||++.|++.||||
T Consensus       270 ~p~~Rp~~~eil~~~~f  286 (286)
T cd07847         270 DPTERLSCEELLEHPYF  286 (286)
T ss_pred             CccccCCHHHHhcCCCC
Confidence            99999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-39  Score=347.25  Aligned_cols=247  Identities=18%  Similarity=0.215  Sum_probs=196.6

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcE-EEEEEEcchh----hHHHHHHHHHHHHHHhhccCC
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTK-VVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLM  153 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~-vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~  153 (667)
                      ....+..++..+.+.||.|+||    +||+|.+..       +. ||+|++....    ..+.+.+|+.+|.+++     
T Consensus        34 ~~~~i~~~~l~~~~~iG~G~~g----~V~~~~~~g-------~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~-----   97 (362)
T KOG0192|consen   34 PEEEIDPDELPIEEVLGSGSFG----TVYKGKWRG-------TDVVAVKIISDPDFDDESRKAFRREASLLSRLR-----   97 (362)
T ss_pred             cceecChHHhhhhhhcccCCce----eEEEEEeCC-------ceeEEEEEecchhcChHHHHHHHHHHHHHHhCC-----
Confidence            3445556777888889999999    999999985       44 9999998632    1457899999999995     


Q ss_pred             CCCcceEEEEEEEecccCCCC-eEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHH
Q 005958          154 YHSYSMQVHGYVSSHTTSGRS-LFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRL  232 (667)
Q Consensus       154 ~HpnIv~l~~~~~~~~~~~~~-~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~  232 (667)
                       |||||+++|++.     +.. .++|||| |+++|+|.+++....       ...|+                    +..
T Consensus        98 -HpNIV~f~G~~~-----~~~~~~~iVtE-y~~~GsL~~~l~~~~-------~~~l~--------------------~~~  143 (362)
T KOG0192|consen   98 -HPNIVQFYGACT-----SPPGSLCIVTE-YMPGGSLSVLLHKKR-------KRKLP--------------------LKV  143 (362)
T ss_pred             -CCCeeeEEEEEc-----CCCCceEEEEE-eCCCCcHHHHHhhcc-------cCCCC--------------------HHH
Confidence             999999999998     444 7999999 999999999998731       01333                    466


Q ss_pred             HHHHHHHHHHHHHHHHHCC-CcccCCCCCcEEEcCCCC-eEEEeeecccccccC---------CCCCCCCcccccC-CCC
Q 005958          233 IRLLMRDLLIGVNYLHSHG-LAHTELRLENVHISPVDR-HIKVGILGNAADFYE---------DGPNNSSPDSNMD-RRQ  300 (667)
Q Consensus       233 i~~i~~QIl~aL~yLHs~g-IvHrDLKPeNILl~~~~~-~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~-~~~  300 (667)
                      +..++.||+.||+|||+++ ||||||||+|||++. ++ ++||+|||+++....         ++..|||||++.+ ...
T Consensus       144 ~l~~aldiArGm~YLH~~~~iIHrDLK~~NiLv~~-~~~~~KI~DFGlsr~~~~~~~~~~~~~GT~~wMAPEv~~~~~~~  222 (362)
T KOG0192|consen  144 RLRIALDIARGMEYLHSEGPIIHRDLKSDNILVDL-KGKTLKIADFGLSREKVISKTSMTSVAGTYRWMAPEVLRGEKSP  222 (362)
T ss_pred             HHHHHHHHHHHHHHHhcCCCeeecccChhhEEEcC-CCCEEEECCCccceeeccccccccCCCCCccccChhhhcCCCCc
Confidence            7889999999999999999 999999999999999 75 999999999976543         2367999996664 568


Q ss_pred             CCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHh
Q 005958          301 MMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLL  380 (667)
Q Consensus       301 ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~  380 (667)
                      |+.|+||||||+++|||+||+.||.+...            ......+  ....      ....++..+.+.+..||.+|
T Consensus       223 ~~~K~DvySFgIvlWEl~t~~~Pf~~~~~------------~~~~~~v--~~~~------~Rp~~p~~~~~~l~~l~~~C  282 (362)
T KOG0192|consen  223 YTEKSDVYSFGIVLWELLTGEIPFEDLAP------------VQVASAV--VVGG------LRPPIPKECPPHLSSLMERC  282 (362)
T ss_pred             CCccchhhhHHHHHHHHHHCCCCCCCCCH------------HHHHHHH--HhcC------CCCCCCccCCHHHHHHHHHh
Confidence            99999999999999999999999964322            1111111  1111      11223344788999999999


Q ss_pred             hhcCcCCCCCHHHHHc
Q 005958          381 LATKPSKRISCLDALR  396 (667)
Q Consensus       381 L~~DP~kRpSa~elL~  396 (667)
                      |..||++||+..+++.
T Consensus       283 W~~dp~~RP~f~ei~~  298 (362)
T KOG0192|consen  283 WLVDPSRRPSFLEIVS  298 (362)
T ss_pred             CCCCCCcCCCHHHHHH
Confidence            9999999999999864

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.6e-41  Score=382.07  Aligned_cols=254  Identities=22%  Similarity=0.288  Sum_probs=213.3

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhH-----HHHHHHHHHHHHHhhccCCCCC
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQ-----RRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~-----~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      ++..++|++++.||+|+||    .|.+++++.     +++.||+|++++....     .-+..|-.||..-      +.+
T Consensus        71 rl~~~DfeilKvIGrGaFG----EV~lVr~k~-----t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~------ns~  135 (1317)
T KOG0612|consen   71 RLKAEDFEILKVIGRGAFG----EVALVRHKS-----TEKVYAMKILNKWEMLKRAETACFREERDIMVFG------NSE  135 (1317)
T ss_pred             hCCHHhhHHHHHhcccccc----eeEEEEeec-----cccchhHHHhhHHHHhhchhHHHHHHHhHHHHcC------CcH
Confidence            4556899999999999999    999999998     8999999999874332     3347788888876      699


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      .|++++-+|+     ++.++|+||| |++||||..++.+.+         +++|                    ..+++|
T Consensus       136 Wiv~LhyAFQ-----D~~~LYlVMd-Y~pGGDlltLlSk~~---------~~pE--------------------~~ArFY  180 (1317)
T KOG0612|consen  136 WIVQLHYAFQ-----DERYLYLVMD-YMPGGDLLTLLSKFD---------RLPE--------------------DWARFY  180 (1317)
T ss_pred             HHHHHHHHhc-----CccceEEEEe-cccCchHHHHHhhcC---------CChH--------------------HHHHHH
Confidence            9999999999     8899999999 999999999999865         4555                    457899


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC----------CCCCCCccccc----CCCCCC
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED----------GPNNSSPDSNM----DRRQMM  302 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~----------~~~Y~APE~l~----~~~~ys  302 (667)
                      +..|+.||+-||+.|+|||||||+|||++. .|++||+|||.|..+..+          +|.|.+||++.    +.+.|+
T Consensus       181 ~aEiVlAldslH~mgyVHRDiKPDNvLld~-~GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~~~g~yG  259 (1317)
T KOG0612|consen  181 TAEIVLALDSLHSMGYVHRDIKPDNVLLDK-SGHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGDGKGEYG  259 (1317)
T ss_pred             HHHHHHHHHHHHhccceeccCCcceeEecc-cCcEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcCCccccC
Confidence            999999999999999999999999999999 999999999999877643          39999999765    336799


Q ss_pred             chhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhh
Q 005958          303 IAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLA  382 (667)
Q Consensus       303 ~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~  382 (667)
                      ..+|+||+||++|||++|..||.               .+.+.+.+-+++.-.   ....+|....+|++++|||.++|.
T Consensus       260 ~ecDwWSlGV~~YEMlyG~TPFY---------------adslveTY~KIm~hk---~~l~FP~~~~VSeeakdLI~~ll~  321 (1317)
T KOG0612|consen  260 RECDWWSLGVFMYEMLYGETPFY---------------ADSLVETYGKIMNHK---ESLSFPDETDVSEEAKDLIEALLC  321 (1317)
T ss_pred             CccchhhhHHHHHHHHcCCCcch---------------HHHHHHHHHHHhchh---hhcCCCcccccCHHHHHHHHHHhc
Confidence            99999999999999999999995               222333333333321   112233335689999999999997


Q ss_pred             cCcCCCCC---HHHHHcCCCCCCCCC
Q 005958          383 TKPSKRIS---CLDALRHPFLCGPRW  405 (667)
Q Consensus       383 ~DP~kRpS---a~elL~HPwf~~~~~  405 (667)
                       +|+.|..   ++++.+||||.+++|
T Consensus       322 -~~e~RLgrngiedik~HpFF~g~~W  346 (1317)
T KOG0612|consen  322 -DREVRLGRNGIEDIKNHPFFEGIDW  346 (1317)
T ss_pred             -ChhhhcccccHHHHHhCccccCCCh
Confidence             5899998   999999999999999

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=7.5e-39  Score=328.56  Aligned_cols=243  Identities=21%  Similarity=0.245  Sum_probs=197.2

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-------hHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-------AQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-------~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      ++|++.+.||+|++|    .||.|.+..     +++.||+|.+....       ....+.+|+++++++      +||||
T Consensus         2 ~~~~~~~~lg~g~~~----~vy~~~~~~-----~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i   66 (263)
T cd06625           2 TNWRRGKLLGQGAFG----RVYLCYDVD-----TGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNL------QHERI   66 (263)
T ss_pred             CcccccceecCCCce----EEEEEEEcC-----CCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhC------CCCCe
Confidence            579999999999999    999999987     78999999986421       123567899999999      49999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      +++++++.     ....+++||| |+++++|.+++...+         .+++                    ..++.++.
T Consensus        67 ~~~~~~~~-----~~~~~~~v~e-~~~~~~l~~~~~~~~---------~~~~--------------------~~~~~~~~  111 (263)
T cd06625          67 VQYYGCLR-----DDETLSIFME-YMPGGSVKDQLKAYG---------ALTE--------------------TVTRKYTR  111 (263)
T ss_pred             eeeEEEEc-----cCCeEEEEEE-ECCCCcHHHHHHHhC---------CCCH--------------------HHHHHHHH
Confidence            99999998     7779999999 999999999998654         3443                    45677999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC------------CCCCCCCcccccCCCCCCchhh
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE------------DGPNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~------------~~~~Y~APE~l~~~~~ys~ksD  306 (667)
                      |++.||.|||+.||+||||||+||+++. ++.++|+|||++.....            +...|+|||.+.+ ..++.++|
T Consensus       112 ~l~~~l~~lH~~~i~H~dl~p~nilv~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~D  189 (263)
T cd06625         112 QILEGVEYLHSNMIVHRDIKGANILRDS-AGNVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVISG-EGYGRKAD  189 (263)
T ss_pred             HHHHHHHHHHhCCeecCCCCHHHEEEcC-CCCEEEeecccceeccccccccccccCCCcCccccCcceecc-CCCCchhh
Confidence            9999999999999999999999999998 89999999999875432            1257999996554 45899999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          307 MRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       307 IWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      ||||||++|||++|++||.....           ..   .. .......     .........+.++.+||.+||..||+
T Consensus       190 i~slG~il~el~~g~~p~~~~~~-----------~~---~~-~~~~~~~-----~~~~~~~~~~~~~~~li~~~l~~~p~  249 (263)
T cd06625         190 VWSVGCTVVEMLTEKPPWAEFEA-----------MA---AI-FKIATQP-----TNPQLPSHVSPDARNFLRRTFVENAK  249 (263)
T ss_pred             hHHHHHHHHHHHhCCCCccccch-----------HH---HH-HHHhccC-----CCCCCCccCCHHHHHHHHHHhhcCcc
Confidence            99999999999999999852211           11   11 1111110     11223446788999999999999999


Q ss_pred             CCCCHHHHHcCCCC
Q 005958          387 KRISCLDALRHPFL  400 (667)
Q Consensus       387 kRpSa~elL~HPwf  400 (667)
                      +|||+.++++||||
T Consensus       250 ~Rpt~~~ll~~~~~  263 (263)
T cd06625         250 KRPSAEELLRHFFV  263 (263)
T ss_pred             cCCCHHHHhhCCCC
Confidence            99999999999998

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=100.00  E-value=1.1e-38  Score=333.16  Aligned_cols=265  Identities=22%  Similarity=0.275  Sum_probs=200.6

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      +++|++.+.||.|+||    .||+|.++.     +++.||||.+....   ......+|+++++.++      ||||+++
T Consensus         4 ~~~y~~~~~lg~g~~~----~vy~~~~~~-----~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~------h~~i~~~   68 (291)
T cd07844           4 LETYKKLDKLGEGSYA----TVYKGRSKL-----TGQLVALKEIRLEHEEGAPFTAIREASLLKDLK------HANIVTL   68 (291)
T ss_pred             ccceeEEEEEeecCCe----EEEEEEEcC-----CCcEEEEEEEecccccCCchhHHHHHHHHhhCC------CcceeeE
Confidence            5889999999999999    999999987     78999999986532   1234578999999995      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     +.+..++||| |+++ +|.+++....        ..+++                    ..++.++.||+
T Consensus        69 ~~~~~-----~~~~~~lv~e-~~~~-~L~~~~~~~~--------~~~~~--------------------~~~~~~~~ql~  113 (291)
T cd07844          69 HDIIH-----TKKTLTLVFE-YLDT-DLKQYMDDCG--------GGLSM--------------------HNVRLFLFQLL  113 (291)
T ss_pred             EEEEe-----cCCeEEEEEe-cCCC-CHHHHHHhCC--------CCCCH--------------------HHHHHHHHHHH
Confidence            99998     7789999999 9986 9999987643        13333                    45788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      .||.|||++||+||||||+||+++. ++.+||+|||++.....         ....|+|||.+.+...++.++||||+||
T Consensus       114 ~al~~lH~~~i~H~dl~p~nil~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~  192 (291)
T cd07844         114 RGLAYCHQRRVLHRDLKPQNLLISE-RGELKLADFGLARAKSVPSKTYSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGC  192 (291)
T ss_pred             HHHHHHHhCCeecccCCHHHEEEcC-CCCEEECccccccccCCCCccccccccccccCCcHHhhcCcccCcHHHHHHHHH
Confidence            9999999999999999999999998 89999999999865421         1256999997776677899999999999


Q ss_pred             HHHHHHhCCCCChhhh----hhhhhhhccCCChhHHHHHHHHHhccCC---C-C-CCCCcccccCCC--HHHHHHHHHhh
Q 005958          313 MMAKMVLRELMDPLIF----TKFKSFLTKGIDPSCLREFLLQVLNRNS---S-S-GNTGFQILDRNW--GAGWNLLSLLL  381 (667)
Q Consensus       313 iLyemltG~~PF~~~~----~~~~~~~~~g~~~~~l~~~~~~~~~~~~---~-~-~~~~~~~~~~~s--~e~~dLI~~~L  381 (667)
                      ++|+|++|++||....    +...++...+.+................   . . ...........+  .++.++|.+||
T Consensus       193 il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L  272 (291)
T cd07844         193 IFYEMATGRPLFPGSTDVEDQLHKIFRVLGTPTEETWPGVSSNPEFKPYSFPFYPPRPLINHAPRLDRIPHGEELALKFL  272 (291)
T ss_pred             HHHHHHhCCCCCCCCccHHHHHHHHHHhcCCCChhhhhhhhhccccccccccccCChhHHHhCcCCCCchhHHHHHHHHh
Confidence            9999999999996322    1112222222222211111100000000   0 0 000001112334  78999999999


Q ss_pred             hcCcCCCCCHHHHHcCCCC
Q 005958          382 ATKPSKRISCLDALRHPFL  400 (667)
Q Consensus       382 ~~DP~kRpSa~elL~HPwf  400 (667)
                      ++||++|||+.++|+||||
T Consensus       273 ~~~p~~Rps~~e~l~~~~f  291 (291)
T cd07844         273 QYEPKKRISAAEAMKHPYF  291 (291)
T ss_pred             ccCcccccCHHHHhcCCCC
Confidence            9999999999999999998

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=100.00  E-value=1.4e-38  Score=332.76  Aligned_cols=276  Identities=21%  Similarity=0.272  Sum_probs=202.7

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ++|++.+.||+|+||    .||+|.+..     +++.||||.+....    ....+.+|+.+++.+.     +||||+++
T Consensus         1 ~~y~~~~~lg~g~~g----~vy~~~~~~-----~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~-----~~~~i~~~   66 (295)
T cd07837           1 DAYEKLEKIGEGTYG----KVYKARDKN-----TGKLVALKKTRLEMDEEGIPPTALREISLLQMLS-----ESIYIVRL   66 (295)
T ss_pred             CCceEeeEecccCCe----EEEEEEECC-----CCcEEEEEeehhhccccCCchHHHHHHHHHHHcc-----CCCCccce
Confidence            479999999999999    999999987     78999999986532    2245688999999997     58999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++...........|+||| |+++ +|.+++......    ....+++                    ..++.++.||+
T Consensus        67 ~~~~~~~~~~~~~~~~lv~e-~~~~-~l~~~~~~~~~~----~~~~~~~--------------------~~~~~~~~qi~  120 (295)
T cd07837          67 LDVEHVEEKNGKPSLYLVFE-YLDS-DLKKFMDSNGRG----PGRPLPA--------------------KTIKSFMYQLL  120 (295)
T ss_pred             eeeEeecCCCCCceEEEEee-ccCc-CHHHHHHHhccc----CCCCCCH--------------------HHHHHHHHHHH
Confidence            99987432222335899999 9997 899998754211    0013343                    56788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      .||.|||++||+||||||+||+++..++.+||+|||++..+...         .+.|+|||.+.+...++.++|||||||
T Consensus       121 ~~L~~LH~~~i~H~dl~~~nil~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~  200 (295)
T cd07837         121 KGVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGLGRAFSIPVKSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGC  200 (295)
T ss_pred             HHHHHHHHCCeeecCCChHHEEEecCCCeEEEeecccceecCCCccccCCcccccCCCChHHhhCCCCCCchHHHHHHHH
Confidence            99999999999999999999999976789999999998765322         356999997776677899999999999


Q ss_pred             HHHHHHhCCCCChhhh---hhhhhhhccCCChhHHHHHHHHH--hccCCCCCC-CCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          313 MMAKMVLRELMDPLIF---TKFKSFLTKGIDPSCLREFLLQV--LNRNSSSGN-TGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       313 iLyemltG~~PF~~~~---~~~~~~~~~g~~~~~l~~~~~~~--~~~~~~~~~-~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      ++|+|++|.+||....   ....++...+.+...........  ....+.... ......+..++++.+||.+||.+||.
T Consensus       201 ~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~  280 (295)
T cd07837         201 IFAEMSRKQPLFPGDSELQQLLHIFKLLGTPTEQVWPGVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPA  280 (295)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHhCCCChhhCcchhhccchhhcCcccchhHHHhccccCHHHHHHHHHHccCChh
Confidence            9999999999996321   11222222222211110000000  000000000 00012245788999999999999999


Q ss_pred             CCCCHHHHHcCCCCC
Q 005958          387 KRISCLDALRHPFLC  401 (667)
Q Consensus       387 kRpSa~elL~HPwf~  401 (667)
                      +||+++|+|.||||+
T Consensus       281 ~R~~~~eil~~~~~~  295 (295)
T cd07837         281 KRISAKAALTHPYFD  295 (295)
T ss_pred             hcCCHHHHhcCCCcC
Confidence            999999999999995

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=100.00  E-value=2.9e-39  Score=330.28  Aligned_cols=247  Identities=21%  Similarity=0.357  Sum_probs=195.5

Q ss_pred             eEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHH----HHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           88 FKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQR----RGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        88 y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~----~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      |++++.||+|+||    +||+|.+..     +++.||+|++.......    ...+|+.++++++      ||||+++++
T Consensus         1 y~~~~~lg~G~~g----~v~~~~~~~-----~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~------~~~i~~~~~   65 (260)
T PF00069_consen    1 YRLVKKLGSGGFG----TVYKAKNKK-----NGQKVAVKIIDKSEIEEEEREENIREIKILRRLR------HPNIVQILD   65 (260)
T ss_dssp             EEEEEEEEEESSE----EEEEEEETT-----TTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHT------BTTBCHEEE
T ss_pred             CEEeEEEEeCCCE----EEEEEEECC-----CCeEEEEEEeccccccccccchhhhhhhcccccc------ccccccccc
Confidence            8999999999999    999999998     78999999998743322    2356999999995      999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++.     .....++||| ++++++|.+++...+         .+++                    ..+..++.||+.|
T Consensus        66 ~~~-----~~~~~~~v~~-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~~~~~qi~~~  110 (260)
T PF00069_consen   66 VFQ-----DDNYLYIVME-YCPGGSLQDYLQKNK---------PLSE--------------------EEILKIAYQILEA  110 (260)
T ss_dssp             EEE-----ESSEEEEEEE-EETTEBHHHHHHHHS---------SBBH--------------------HHHHHHHHHHHHH
T ss_pred             ccc-----cccccccccc-ccccccccccccccc---------cccc--------------------ccccccccccccc
Confidence            999     6889999999 999999999998443         3443                    5678899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      |.|||++||+|+||||+||+++. ++.++|+|||.+.....         ....|+|||++.....++.++||||||+++
T Consensus       111 L~~Lh~~~i~H~dikp~NIl~~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il  189 (260)
T PF00069_consen  111 LAYLHSKGIVHRDIKPENILLDE-NGEVKLIDFGSSVKLSENNENFNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIIL  189 (260)
T ss_dssp             HHHHHHTTEEESSBSGGGEEEST-TSEEEESSGTTTEESTSTTSEBSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999997 99999999999975311         125799999655467789999999999999


Q ss_pred             HHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHH
Q 005958          315 AKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDA  394 (667)
Q Consensus       315 yemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~el  394 (667)
                      |+|++|..||...            ........+..........   ..........++.+||.+||+.||++|||+.++
T Consensus       190 ~~l~~~~~p~~~~------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~l  254 (260)
T PF00069_consen  190 YELLTGKLPFEES------------NSDDQLEIIEKILKRPLPS---SSQQSREKSEELRDLIKKMLSKDPEQRPSAEEL  254 (260)
T ss_dssp             HHHHHSSSSSTTS------------SHHHHHHHHHHHHHTHHHH---HTTSHTTSHHHHHHHHHHHSSSSGGGSTTHHHH
T ss_pred             ccccccccccccc------------cchhhhhhhhhcccccccc---cccccchhHHHHHHHHHHHccCChhHCcCHHHH
Confidence            9999999998632            1111111111111100000   000011123799999999999999999999999


Q ss_pred             HcCCCC
Q 005958          395 LRHPFL  400 (667)
Q Consensus       395 L~HPwf  400 (667)
                      ++||||
T Consensus       255 ~~~~~~  260 (260)
T PF00069_consen  255 LKHPWF  260 (260)
T ss_dssp             HTSGGG
T ss_pred             hcCCCC
Confidence            999998

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=100.00  E-value=9.2e-39  Score=334.94  Aligned_cols=269  Identities=22%  Similarity=0.271  Sum_probs=203.9

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-------HHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-------QRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-------~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      +|++.+.||.|+||    .||+|.+..     +++.||||.+.....       ...+.+|+++++.++      |+||+
T Consensus         1 ~y~~~~~lg~g~~~----~vy~~~~~~-----~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~------h~~i~   65 (298)
T cd07841           1 RYEKGKKLGEGTYA----VVYKARDKE-----TGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELK------HPNII   65 (298)
T ss_pred             Cceeeeeeeecccc----EEEEEEECC-----CCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcC------CCCCh
Confidence            58999999999999    999999987     789999999975322       234578999999995      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++.     +.+.+++||| |+ +|+|.+++....        ..+++                    ..++.++.|
T Consensus        66 ~~~~~~~-----~~~~~~lv~e-~~-~~~L~~~i~~~~--------~~~~~--------------------~~~~~~~~q  110 (298)
T cd07841          66 GLLDVFG-----HKSNINLVFE-FM-ETDLEKVIKDKS--------IVLTP--------------------ADIKSYMLM  110 (298)
T ss_pred             hhhheee-----cCCEEEEEEc-cc-CCCHHHHHhccC--------CCCCH--------------------HHHHHHHHH
Confidence            9999998     7789999999 88 679999997642        13444                    457789999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC---------CCCCCcccccCCCCCCchhhHHHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG---------PNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~---------~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      |+.||.|||++||+|+||||+||+++. ++.++|+|||++.......         +.|+|||.+.+...++.++|||||
T Consensus       111 i~~al~~lH~~~i~H~dl~p~nill~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~sl  189 (298)
T cd07841         111 TLRGLEYLHSNWILHRDLKPNNLLIAS-DGVLKLADFGLARSFGSPNRKMTHQVVTRWYRAPELLFGARHYGVGVDMWSV  189 (298)
T ss_pred             HHHHHHHHHhCCeeecCCChhhEEEcC-CCCEEEccceeeeeccCCCccccccccceeeeCHHHHhCCCCCCcHHHHHHH
Confidence            999999999999999999999999998 8999999999998665431         469999977666778999999999


Q ss_pred             HHHHHHHHhCCCCChhhhh---hhhhhhccCCChhHHHHHHHHHhcc---CCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          311 GFMMAKMVLRELMDPLIFT---KFKSFLTKGIDPSCLREFLLQVLNR---NSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~---~~~~~~~~g~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      ||++|||++|.+||.....   ..+.+...+.+..............   ...............+.++++||.+||++|
T Consensus       190 G~il~e~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  269 (298)
T cd07841         190 GCIFAELLLRVPFLPGDSDIDQLGKIFEALGTPTEENWPGVTSLPDYVEFKPFPPTPLKQIFPAASDDALDLLQRLLTLN  269 (298)
T ss_pred             HHHHHHHHcCCccccCCccHHHHHHHHHHcCCCchhhhhhcccccccccccccCCcchhhhcccccHHHHHHHHHHhcCC
Confidence            9999999999988863221   1112222222211111000000000   000000001123456789999999999999


Q ss_pred             cCCCCCHHHHHcCCCCCCCCCC
Q 005958          385 PSKRISCLDALRHPFLCGPRWR  406 (667)
Q Consensus       385 P~kRpSa~elL~HPwf~~~~~~  406 (667)
                      |++|||++|+|+||||.+....
T Consensus       270 P~~R~s~~e~l~~~~~~~~~~~  291 (298)
T cd07841         270 PNKRITARQALEHPYFSNDPAP  291 (298)
T ss_pred             cccCcCHHHHhhCccccCCCCC
Confidence            9999999999999999997643

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=100.00  E-value=8.3e-39  Score=332.62  Aligned_cols=264  Identities=24%  Similarity=0.326  Sum_probs=203.1

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      +|++.+.||.|+||    .||+|++..     +++.||||.+....    ....+.+|++++++++      ||||++++
T Consensus         1 ~y~~~~~l~~g~~~----~v~~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~------h~~i~~~~   65 (284)
T cd07860           1 NFQKVEKIGEGTYG----VVYKARNKL-----TGEVVALKKIRLDTETEGVPSTAIREISLLKELN------HPNIVKLL   65 (284)
T ss_pred             CceeeeeecCCCce----EEEEEEECC-----CCCEEEEEEccccccccccchHHHHHHHHHHhcC------CCCCcchh
Confidence            58999999999999    999999987     78999999987432    2245688999999994      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     +.+..++||| |+.+ +|.+++....       ...++                    ...++.++.|++.
T Consensus        66 ~~~~-----~~~~~~~v~e-~~~~-~l~~~~~~~~-------~~~l~--------------------~~~~~~~~~~i~~  111 (284)
T cd07860          66 DVIH-----TENKLYLVFE-FLHQ-DLKKFMDASP-------LSGIP--------------------LPLIKSYLFQLLQ  111 (284)
T ss_pred             hhcc-----cCCcEEEEee-cccc-CHHHHHHhCC-------CCCCC--------------------HHHHHHHHHHHHH
Confidence            9998     7789999999 8875 9999987532       11333                    3567889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      ||+|||++||+|+||+|+||+++. ++.+||+|||++......         ...|+|||.+.+...++.++|||||||+
T Consensus       112 ~l~~lh~~~i~H~~l~p~nill~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~i  190 (284)
T cd07860         112 GLAFCHSHRVLHRDLKPQNLLINT-EGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCI  190 (284)
T ss_pred             HHHHHHHCCeecCCCCHHHEEECC-CCCEEEeeccchhhcccCccccccccccccccCCeEEecCCCCCcHHHHHHHHHH
Confidence            999999999999999999999998 899999999998755322         2569999977666667899999999999


Q ss_pred             HHHHHhCCCCChhh---hhhhhhhhccCCChhHHHHHHHHH---hccCCCCCCC-CcccccCCCHHHHHHHHHhhhcCcC
Q 005958          314 MAKMVLRELMDPLI---FTKFKSFLTKGIDPSCLREFLLQV---LNRNSSSGNT-GFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       314 LyemltG~~PF~~~---~~~~~~~~~~g~~~~~l~~~~~~~---~~~~~~~~~~-~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      +|||++|+.||...   ....+.+...+.+...........   .......... .....+.+++++++||.+||+.||+
T Consensus       191 l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~  270 (284)
T cd07860         191 FAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSLPDYKPSFPKWARQDFSKVVPPLDEDGRDLLSQMLHYDPN  270 (284)
T ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhhhhHHHHHHhhcccccccCHHHHcccCCHHHHHHHHHhcCCCcc
Confidence            99999999999632   233333333443332221111110   0000000000 1112345788999999999999999


Q ss_pred             CCCCHHHHHcCCCC
Q 005958          387 KRISCLDALRHPFL  400 (667)
Q Consensus       387 kRpSa~elL~HPwf  400 (667)
                      +|||++++|+||||
T Consensus       271 ~Rpt~~~~l~~~~f  284 (284)
T cd07860         271 KRISAKAALAHPFF  284 (284)
T ss_pred             cCCCHHHHhcCCCC
Confidence            99999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=100.00  E-value=1.7e-38  Score=329.93  Aligned_cols=264  Identities=27%  Similarity=0.360  Sum_probs=201.4

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      +|++.+.||+|+||    .||+|.+..     +++.||+|++....    ....+.+|+.+++.++      ||||++++
T Consensus         1 ~y~~~~~l~~g~~~----~v~~~~~~~-----~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~------~~~i~~~~   65 (286)
T cd07832           1 RYKILGRIGEGAHG----IVFKAKDRE-----TGETVALKKVALRRLEGGIPNQALREIKALQACQ------HPYVVKLL   65 (286)
T ss_pred             CceEEeecccCCCc----EEEEEEECC-----CCceEEEEEEEcccccchhhHHHHHHHHHHHhCC------CCCCccee
Confidence            58999999999999    999999987     78999999987532    2356789999999994      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     .....++||| |+ +++|.+++....        ..+++                    ..++.++.||+.
T Consensus        66 ~~~~-----~~~~~~~v~e-~~-~~~L~~~~~~~~--------~~~~~--------------------~~~~~~~~~i~~  110 (286)
T cd07832          66 DVFP-----HGSGFVLVME-YM-PSDLSEVLRDEE--------RPLPE--------------------AQVKSYMRMLLK  110 (286)
T ss_pred             eEEe-----cCCeeEEEec-cc-CCCHHHHHHhcC--------CCCCH--------------------HHHHHHHHHHHH
Confidence            9998     7889999999 88 779999987643        13454                    457889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC----------CCCCCCcccccCCCCCCchhhHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED----------GPNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~----------~~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      ||+|||++||+|+||||+||+++. ++.++|+|||.+......          ...|+|||.+.+...++.++||||+||
T Consensus       111 ~l~~lH~~~i~H~dl~p~ni~~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~  189 (286)
T cd07832         111 GVAYMHANGIMHRDLKPANLLISA-DGVLKIADFGLARLFSEEEPRLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGC  189 (286)
T ss_pred             HHHHHHHCCeecCCcCHHHEEEcC-CCcEEEeeeeecccccCCCCCccccccCcccccCceeeeccccCCchhHHHHHHH
Confidence            999999999999999999999998 899999999998865433          256999997777777899999999999


Q ss_pred             HHHHHHhCCCCChhhh---hhhhhhhccCCChh-HHHHHHH--HHhcc-CCCCCCCC-cccccCCCHHHHHHHHHhhhcC
Q 005958          313 MMAKMVLRELMDPLIF---TKFKSFLTKGIDPS-CLREFLL--QVLNR-NSSSGNTG-FQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       313 iLyemltG~~PF~~~~---~~~~~~~~~g~~~~-~l~~~~~--~~~~~-~~~~~~~~-~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      ++|||++|.+||....   .........+.+.. .+.+...  ..... ........ ....+..+.++++||.+||.+|
T Consensus       190 ~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  269 (286)
T cd07832         190 IFAELLNGSPLFPGENDIEQLAIVFRTLGTPNEETWPGLTSLPDYNKITFPESKPIPLEEIFPDASPEALDLLKGLLVYD  269 (286)
T ss_pred             HHHHHHcCCcCcCCCCHHHHHHHHHHHcCCCChHHHhhccCcchhhcccCCCCCcchHHHhCCCccHHHHHHHHHHhccC
Confidence            9999999998886321   11111111222111 1111000  00000 00000000 0123456789999999999999


Q ss_pred             cCCCCCHHHHHcCCCCC
Q 005958          385 PSKRISCLDALRHPFLC  401 (667)
Q Consensus       385 P~kRpSa~elL~HPwf~  401 (667)
                      |++|||++++|+||||.
T Consensus       270 p~~R~~~~~~l~h~~~~  286 (286)
T cd07832         270 PSKRLSAAEALRHPYFT  286 (286)
T ss_pred             hhhCCCHHHHhhCcCcC
Confidence            99999999999999984

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.2e-41  Score=361.59  Aligned_cols=250  Identities=17%  Similarity=0.224  Sum_probs=208.8

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      +.|+|+..||.|+||    .||+|.++.     ++-..|-|+|...  ...++..-||+||..+      +||+||++++
T Consensus        32 d~WeIiGELGDGAFG----KVyKA~nke-----t~~lAAaKvIetkseEELEDylVEIeILa~C------dHP~ivkLl~   96 (1187)
T KOG0579|consen   32 DHWEIIGELGDGAFG----KVYKAVNKE-----TKLLAAAKVIETKSEEELEDYLVEIEILAEC------DHPVIVKLLS   96 (1187)
T ss_pred             HHHHHHhhhcCccch----hhhhhhccc-----chhhhhhhhhcccchhHHhhhhhhhhhhhcC------CChHHHHHHH
Confidence            568899999999999    999999997     7788888988653  3345678899999999      5999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      .|.     ..+.+||+.| ||+||-...+|-.-+        ..|.|                    ++|+.+++|++.|
T Consensus        97 ayy-----~enkLwiliE-FC~GGAVDaimlEL~--------r~LtE--------------------~QIqvvc~q~ldA  142 (1187)
T KOG0579|consen   97 AYY-----FENKLWILIE-FCGGGAVDAIMLELG--------RVLTE--------------------DQIQVVCYQVLDA  142 (1187)
T ss_pred             HHh-----ccCceEEEEe-ecCCchHhHHHHHhc--------cccch--------------------HHHHHHHHHHHHH
Confidence            998     8899999999 999999999987643        24555                    6799999999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeeccccccc---------CCCCCCCCccccc----CCCCCCchhhHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFY---------EDGPNNSSPDSNM----DRRQMMIAFDMRCV  310 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~---------~~~~~Y~APE~l~----~~~~ys~ksDIWSL  310 (667)
                      |.|||+++|||||||..|||++- +|.++|+|||.+....         .+.|+|||||+++    ...+|++++|||||
T Consensus       143 Ln~LHs~~iIHRDLKAGNiL~Tl-dGdirLADFGVSAKn~~t~qkRDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSl  221 (1187)
T KOG0579|consen  143 LNWLHSQNIIHRDLKAGNILLTL-DGDIRLADFGVSAKNKSTRQKRDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSL  221 (1187)
T ss_pred             HHHHhhcchhhhhccccceEEEe-cCcEeeecccccccchhHHhhhccccCCcccccchheeeccccCCCchhhhhHHhh
Confidence            99999999999999999999999 9999999999986432         3459999999876    45689999999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      |++|.||.-+.||..+...+-.               +.++-...++    .+-.+..++..+.||+.+||..||..||+
T Consensus       222 GITLIEMAqiEPPHhelnpMRV---------------llKiaKSePP----TLlqPS~Ws~~F~DfLk~cL~Knp~~Rp~  282 (1187)
T KOG0579|consen  222 GITLIEMAQIEPPHHELNPMRV---------------LLKIAKSEPP----TLLQPSHWSRSFSDFLKRCLVKNPRNRPP  282 (1187)
T ss_pred             hhHHHHHhccCCCccccchHHH---------------HHHHhhcCCC----cccCcchhhhHHHHHHHHHHhcCCccCCC
Confidence            9999999999999765433221               1222222222    23334567889999999999999999999


Q ss_pred             HHHHHcCCCCCCCC
Q 005958          391 CLDALRHPFLCGPR  404 (667)
Q Consensus       391 a~elL~HPwf~~~~  404 (667)
                      ++++|+||||+..+
T Consensus       283 aaqll~Hpfv~~~~  296 (1187)
T KOG0579|consen  283 AAQLLKHPFVQNAP  296 (1187)
T ss_pred             HHHHhhCcccccCC
Confidence            99999999999865

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.2e-42  Score=339.39  Aligned_cols=315  Identities=19%  Similarity=0.274  Sum_probs=254.1

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      .+.+-.+.||.|+||    +||.+++..     +|+.||+|++..-    ...+.+.+|+.+|..++      |.|++..
T Consensus        53 ~Di~PDRPIGYGAFG----VVWsVTDPR-----dgrrvalkK~pnvfq~L~s~krvFre~kmLcfFk------HdNVLSa  117 (449)
T KOG0664|consen   53 QDIQPDRPIGYGAFG----VVWSVTDPR-----SGKRVALKKMPNVFQNLASCKRVFREIKMLSSFR------HDNVLSL  117 (449)
T ss_pred             ccCCCCCccccccee----EEEeccCCC-----CccchhHhhcchHHHHHHHHHHHHHHHHHHHhhc------cccHHHH
Confidence            455667899999999    999999988     8999999998642    23467799999999996      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++..+.+..+.-..+|+++| ++.. ||..+|..-.         .|+                    .++|+.+++||+
T Consensus       118 LDILQPph~dfFqEiYV~TE-LmQS-DLHKIIVSPQ---------~Ls--------------------~DHvKVFlYQIL  166 (449)
T KOG0664|consen  118 LDILQPANPSFFQELYVLTE-LMQS-DLHKIIVSPQ---------ALT--------------------PDHVKVFVYQIL  166 (449)
T ss_pred             HHhcCCCCchHHHHHHHHHH-HHHh-hhhheeccCC---------CCC--------------------cchhhhhHHHHH
Confidence            99988554444457899999 9999 9999987643         333                    368999999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC----------CCCCCcccccCCCCCCchhhHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG----------PNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~----------~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      +||+|||+.||.||||||.|+|+++ +..+||||||+|+....+.          .+|+|||++++.+.|+.++||||+|
T Consensus       167 RGLKYLHsA~ILHRDIKPGNLLVNS-NCvLKICDFGLARvee~d~~~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVG  245 (449)
T KOG0664|consen  167 RGLKYLHTANILHRDIKPGNLLVNS-NCILKICDFGLARTWDQRDRLNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVG  245 (449)
T ss_pred             hhhHHHhhcchhhccCCCccEEecc-CceEEecccccccccchhhhhhhHHHHHHHHhccHHHhhcchhhcCccceehhh
Confidence            9999999999999999999999999 9999999999999877654          6899999999999999999999999


Q ss_pred             HHHHHHHhCCCCChh---hhhhhhhhhccCCChhHHHHHH-----HHHhccCCCCCC--CCcc--cccCCCHHHHHHHHH
Q 005958          312 FMMAKMVLRELMDPL---IFTKFKSFLTKGIDPSCLREFL-----LQVLNRNSSSGN--TGFQ--ILDRNWGAGWNLLSL  379 (667)
Q Consensus       312 viLyemltG~~PF~~---~~~~~~~~~~~g~~~~~l~~~~-----~~~~~~~~~~~~--~~~~--~~~~~s~e~~dLI~~  379 (667)
                      ||+.||+.++..|..   +.++..+....|++..+--.+-     ..++........  .-+.  -......++.+++.+
T Consensus       246 CIFaELLgRrILFQAq~PiqQL~lItdLLGTPs~EaMr~ACEGAk~H~LR~~~k~Ps~~vLYtlsS~~~~~heav~~~~~  325 (449)
T KOG0664|consen  246 CIFAELLQRKILFQAAGPIEQLQMIIDLLGTPSQEAMKYACEGAKNHVLRAGLRAPDTQRLYKIASPDDKNHEAVDLLQK  325 (449)
T ss_pred             HHHHHHHhhhhhhhccChHHHHHHHHHHhCCCcHHHHHHHhhhhHHHhhccCCCCCCccceeeecCCcccchHHHHHHHH
Confidence            999999999999983   5667777788898875433322     122222221111  1111  122344688999999


Q ss_pred             hhhcCcCCCCCHHHHHcCCCCCCCCCCCCCchhhhhccCCCchhhchhhhhcChHHHHHHHHHHHHhhhcCCCCCCCccc
Q 005958          380 LLATKPSKRISCLDALRHPFLCGPRWRVDPSIDMIRWGLGSSAVRITEEYIYRQPQRARLAYFVELMEMLNPHSKPKNWL  459 (667)
Q Consensus       380 ~L~~DP~kRpSa~elL~HPwf~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~  459 (667)
                      ||.+||++|++.++++.|+|+.+.+.+...+++.               |+|+...... +.|...+++-...+....|+
T Consensus       326 ~l~~d~dkris~~~A~~~~~~~e~R~r~~sCmC~---------------~~~tt~~~~~-r~f~~~~~P~~~~pFd~~~e  389 (449)
T KOG0664|consen  326 LLHFDPDKRISVEEALQHRYLEEGRLRFHSCMCS---------------CCYTKPNMPS-RLFAQDLDPRHESPFDPKWE  389 (449)
T ss_pred             HhCCCCcccccHhhhcccccccccceeeeeeeEe---------------eeccCCCcch-hhhccccCcccCCCcChhHH
Confidence            9999999999999999999999999888887766               6777666433 77888888888888899998


Q ss_pred             cccC
Q 005958          460 EFLP  463 (667)
Q Consensus       460 ~~~~  463 (667)
                      ..+.
T Consensus       390 ~~~~  393 (449)
T KOG0664|consen  390 KDMS  393 (449)
T ss_pred             HHHh
Confidence            7665

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=100.00  E-value=1e-38  Score=329.49  Aligned_cols=252  Identities=17%  Similarity=0.210  Sum_probs=198.3

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-hhHHHHHHHHHHHHHHhhccCCCCCcceEEEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGY  164 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~  164 (667)
                      +.|++.+.||+|+||    .||+|.+..     +++.||+|++... .....+.+|+.+++++.     +||||++++++
T Consensus         6 ~~y~~~~~lg~g~~g----~vy~~~~~~-----~~~~~aik~~~~~~~~~~~~~~e~~~l~~~~-----~h~~i~~~~~~   71 (272)
T cd06637           6 GIFELVELVGNGTYG----QVYKGRHVK-----TGQLAAIKVMDVTGDEEEEIKQEINMLKKYS-----HHRNIATYYGA   71 (272)
T ss_pred             hhhhHHHheeecCCe----EEEEEEEcC-----CCcEEEEEEEEcCCccHHHHHHHHHHHHHhc-----CCCCeeeEeeE
Confidence            568899999999999    999999987     7899999998653 23356788999999985     59999999999


Q ss_pred             EEecccC-CCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          165 VSSHTTS-GRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       165 ~~~~~~~-~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      +...... ....+|+||| |+++|+|.+++....       ...+++                    ..++.++.|++.|
T Consensus        72 ~~~~~~~~~~~~~~iv~e-~~~~~~L~~~l~~~~-------~~~l~~--------------------~~~~~~~~qi~~~  123 (272)
T cd06637          72 FIKKNPPGMDDQLWLVME-FCGAGSVTDLIKNTK-------GNTLKE--------------------EWIAYICREILRG  123 (272)
T ss_pred             EeecCCCCCCcEEEEEEE-cCCCCcHHHHHHhcc-------CCCCCH--------------------HHHHHHHHHHHHH
Confidence            8743211 2457999999 999999999998632       113444                    4577899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccC----CCCCCchhhHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMD----RRQMMIAFDMRCV  310 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~----~~~ys~ksDIWSL  310 (667)
                      |+|||++||+||||||+||+++. ++.+||+|||++......         ...|+|||++..    ...|+.++||||+
T Consensus       124 l~~LH~~~ivh~dl~~~nili~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~sl  202 (272)
T cd06637         124 LSHLHQHKVIHRDIKGQNVLLTE-NAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSL  202 (272)
T ss_pred             HHHHHHCCCccCCCCHHHEEECC-CCCEEEccCCCceecccccccCCcccccccccCHhHhccccCcCCCCCchhhHHHH
Confidence            99999999999999999999998 889999999999754322         256999997653    3458889999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      ||++|||++|.+||.......              ... .......     .......++.++.+||.+||..||.+|||
T Consensus       203 Gv~l~el~~g~~p~~~~~~~~--------------~~~-~~~~~~~-----~~~~~~~~~~~~~~li~~~l~~~p~~Rpt  262 (272)
T cd06637         203 GITAIEMAEGAPPLCDMHPMR--------------ALF-LIPRNPA-----PRLKSKKWSKKFQSFIESCLVKNHSQRPT  262 (272)
T ss_pred             HHHHHHHHhCCCCccccCHHH--------------HHH-HHhcCCC-----CCCCCCCcCHHHHHHHHHHcCCChhhCCC
Confidence            999999999999985321111              000 0000000     01122356789999999999999999999


Q ss_pred             HHHHHcCCCC
Q 005958          391 CLDALRHPFL  400 (667)
Q Consensus       391 a~elL~HPwf  400 (667)
                      +.++++||||
T Consensus       263 ~~~il~~~~~  272 (272)
T cd06637         263 TEQLMKHPFI  272 (272)
T ss_pred             HHHHhhCCCC
Confidence            9999999998

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=100.00  E-value=2.5e-38  Score=330.74  Aligned_cols=263  Identities=21%  Similarity=0.252  Sum_probs=197.0

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ++|++.+.||+|+||    .||+|.+..     +++.||+|.+....   ......+|+.+++.++      |+||++++
T Consensus         5 ~~y~~~~~ig~g~~~----~v~~~~~~~-----~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~------h~ni~~~~   69 (291)
T cd07870           5 TSYLNLEKLGEGSYA----TVYKGISRI-----NGQLVALKVISMKTEEGVPFTAIREASLLKGLK------HANIVLLH   69 (291)
T ss_pred             ceeEEEEEEEecCCE----EEEEEEEcC-----CCcEEEEEEecccCcCCCcHHHHHHHHHHHhcC------CCCEeEEE
Confidence            789999999999999    999999987     78999999986532   2235678999999994      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     ..+..|+||| |+++ +|.+++....        ..+.+                    ..++.++.||+.
T Consensus        70 ~~~~-----~~~~~~lv~e-~~~~-~l~~~~~~~~--------~~~~~--------------------~~~~~~~~qi~~  114 (291)
T cd07870          70 DIIH-----TKETLTFVFE-YMHT-DLAQYMIQHP--------GGLHP--------------------YNVRLFMFQLLR  114 (291)
T ss_pred             EEEe-----cCCeEEEEEe-cccC-CHHHHHHhCC--------CCCCH--------------------HHHHHHHHHHHH
Confidence            9998     7789999999 9975 8888876532        12332                    456789999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      ||.|||++||+|+||||+|||++. ++.+||+|||+++....         ..+.|+|||.+.+...++.++|||||||+
T Consensus       115 ~L~~lH~~~i~H~dlkp~Nil~~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~  193 (291)
T cd07870         115 GLAYIHGQHILHRDLKPQNLLISY-LGELKLADFGLARAKSIPSQTYSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCI  193 (291)
T ss_pred             HHHHHHhCCcccCCCChHHEEEcC-CCcEEEeccccccccCCCCCCCCCccccccccCCceeecCCCCCcHHHHHHHHHH
Confidence            999999999999999999999998 89999999999875322         13679999977666678899999999999


Q ss_pred             HHHHHhCCCCChhhhh----hhhhhhccCCChhHHHHHHHHHhccCCCCC-----CCCcc-cc--cCCCHHHHHHHHHhh
Q 005958          314 MAKMVLRELMDPLIFT----KFKSFLTKGIDPSCLREFLLQVLNRNSSSG-----NTGFQ-IL--DRNWGAGWNLLSLLL  381 (667)
Q Consensus       314 LyemltG~~PF~~~~~----~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~-----~~~~~-~~--~~~s~e~~dLI~~~L  381 (667)
                      +|+|++|.+||.....    ..+.....|.+.......... .....+..     ..... .+  -..++++.+||.+||
T Consensus       194 l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l  272 (291)
T cd07870         194 FIEMLQGQPAFPGVSDVFEQLEKIWTVLGVPTEDTWPGVSK-LPNYKPEWFLPCKPQQLRVVWKRLSRPPKAEDLASQML  272 (291)
T ss_pred             HHHHHhCCCCCCCchhHHHHHHHHHHHcCCCChhhhhhhhh-cccccchhccccCCcchhhhccccCCChHHHHHHHHHh
Confidence            9999999999963221    111112222222211111100 00000000     00000 00  123578999999999


Q ss_pred             hcCcCCCCCHHHHHcCCCC
Q 005958          382 ATKPSKRISCLDALRHPFL  400 (667)
Q Consensus       382 ~~DP~kRpSa~elL~HPwf  400 (667)
                      +.||++|||+.|++.||||
T Consensus       273 ~~dp~~R~t~~~~l~h~~~  291 (291)
T cd07870         273 MMFPKDRISAQDALLHPYF  291 (291)
T ss_pred             CcCcccCcCHHHHhcCCCC
Confidence            9999999999999999998

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=2.3e-40  Score=321.60  Aligned_cols=267  Identities=24%  Similarity=0.304  Sum_probs=221.6

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGY  164 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~  164 (667)
                      .++|++.+++|+|.|+    .||.|++..     ++++++||++++-. .+.+.||+.||+.|+     +||||++++++
T Consensus        37 ~ddYeivrk~GRGKYS----EVFeg~~~~-----~~eK~ViKiLKPVk-kkKIkREikIL~nL~-----gg~NIi~L~Di  101 (338)
T KOG0668|consen   37 QDDYEIVRKVGRGKYS----EVFEGINIT-----NNEKCVIKILKPVK-KKKIKREIKILQNLR-----GGPNIIKLLDI  101 (338)
T ss_pred             cchHHHHHHHcCccHh----hHhcccccC-----CCceEEEeeechHH-HHHHHHHHHHHHhcc-----CCCCeeehhhh
Confidence            5899999999999999    999999988     78999999998753 356899999999998     89999999999


Q ss_pred             EEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHH
Q 005958          165 VSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGV  244 (667)
Q Consensus       165 ~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL  244 (667)
                      ..++   ......+|+| |.++.|...+...            |+                    ..+|+.+++||+.||
T Consensus       102 V~Dp---~SktpaLiFE-~v~n~Dfk~ly~t------------l~--------------------d~dIryY~~elLkAL  145 (338)
T KOG0668|consen  102 VKDP---ESKTPSLIFE-YVNNTDFKQLYPT------------LT--------------------DYDIRYYIYELLKAL  145 (338)
T ss_pred             hcCc---cccCchhHhh-hhccccHHHHhhh------------hc--------------------hhhHHHHHHHHHHHH
Confidence            9977   6778899999 9999777766542            22                    246899999999999


Q ss_pred             HHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC--------CCCCCcccccCCCCCCchhhHHHHHHHHHH
Q 005958          245 NYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG--------PNNSSPDSNMDRRQMMIAFDMRCVGFMMAK  316 (667)
Q Consensus       245 ~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~--------~~Y~APE~l~~~~~ys~ksDIWSLGviLye  316 (667)
                      .|||+.||+|||+||.|++|+.....++|+|+|+|.++.++.        .+|--||++.....|+..-|+|||||++..
T Consensus       146 dyCHS~GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~eYnVRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~  225 (338)
T KOG0668|consen  146 DYCHSMGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLAS  225 (338)
T ss_pred             hHHHhcCcccccCCcceeeechhhceeeeeecchHhhcCCCceeeeeeehhhcCCchheeechhccccHHHHHHHHHHHH
Confidence            999999999999999999999877899999999998877664        567789998899999999999999999999


Q ss_pred             HHhCCCCCh----hhhhhhhhhhccCCChhHHHHHH-----------HHHhccCCCCCCCCccc---ccCCCHHHHHHHH
Q 005958          317 MVLRELMDP----LIFTKFKSFLTKGIDPSCLREFL-----------LQVLNRNSSSGNTGFQI---LDRNWGAGWNLLS  378 (667)
Q Consensus       317 mltG~~PF~----~~~~~~~~~~~~g~~~~~l~~~~-----------~~~~~~~~~~~~~~~~~---~~~~s~e~~dLI~  378 (667)
                      |+..+-||-    ..+|+.++....|++.  +..++           ..++.......+..+-.   ..-.++++.|||.
T Consensus       226 miFrkepFFhG~dN~DQLVkIakVLGt~e--l~~Yl~KY~i~Ldp~~~~i~~~~~rk~w~~Fi~~~n~hl~~peaiDlld  303 (338)
T KOG0668|consen  226 MIFRKEPFFHGHDNYDQLVKIAKVLGTDE--LYAYLNKYQIDLDPQFEDILGRHSRKPWSRFINSENQHLVSPEAIDLLD  303 (338)
T ss_pred             HHhccCcccCCCCCHHHHHHHHHHhChHH--HHHHHHHHccCCChhHhhHhhccccccHHHhCCccccccCChHHHHHHH
Confidence            999887764    4678888888888754  33332           22333333322222221   1224799999999


Q ss_pred             HhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          379 LLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       379 ~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      ++|.+|-.+|+||.|++.||||....
T Consensus       304 klLrYDHqeRlTakEam~HpyF~~~~  329 (338)
T KOG0668|consen  304 KLLRYDHQERLTAKEAMAHPYFAPVR  329 (338)
T ss_pred             HHHhhccccccchHHHhcCchHHHHH
Confidence            99999999999999999999998754

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=1.2e-38  Score=358.13  Aligned_cols=251  Identities=18%  Similarity=0.201  Sum_probs=200.2

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ...|.+.+.||+|+||    .||+|.+...    .++.||+|.+....  ....+.+|+.+|+.+      +||||++++
T Consensus        66 ~~~y~~~~~lg~G~~g----~vy~a~~~~~----~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l------~Hpniv~~~  131 (478)
T PTZ00267         66 EHMYVLTTLVGRNPTT----AAFVATRGSD----PKEKVVAKFVMLNDERQAAYARSELHCLAAC------DHFGIVKHF  131 (478)
T ss_pred             ceeEEEEEEEEeCCCc----EEEEEEEcCC----CCeEEEEEEcccCCHHHHHHHHHHHHHHHhC------CCCCEeEEE
Confidence            3459999999999999    9999998872    27889999875432  234567899999999      499999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     ..+.+||||| |+++|+|.+++....     .....+++                    ..+..++.||+.
T Consensus       132 ~~~~-----~~~~~~lv~E-~~~gg~L~~~l~~~~-----~~~~~l~~--------------------~~~~~i~~qi~~  180 (478)
T PTZ00267        132 DDFK-----SDDKLLLIME-YGSGGDLNKQIKQRL-----KEHLPFQE--------------------YEVGLLFYQIVL  180 (478)
T ss_pred             EEEE-----ECCEEEEEEE-CCCCCCHHHHHHHHH-----hccCCCCH--------------------HHHHHHHHHHHH
Confidence            9998     7789999999 999999999886531     01123554                    456779999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-----------CCCCCCCcccccCCCCCCchhhHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-----------DGPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-----------~~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      ||.|||++||+||||||+|||++. ++.+||+|||+|+.+..           +.+.|+|||++ ....++.++||||||
T Consensus       181 aL~~lH~~~ivHrDlkp~NIll~~-~~~~kL~DFgla~~~~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~slG  258 (478)
T PTZ00267        181 ALDEVHSRKMMHRDLKSANIFLMP-TGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPELW-ERKRYSKKADMWSLG  258 (478)
T ss_pred             HHHHHHhCCEEECCcCHHhEEECC-CCcEEEEeCcCceecCCccccccccccCCCccccCHhHh-CCCCCCcHHhHHHHH
Confidence            999999999999999999999998 89999999999986542           23679999955 455689999999999


Q ss_pred             HHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH
Q 005958          312 FMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC  391 (667)
Q Consensus       312 viLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa  391 (667)
                      |++|||++|+.||..            ....   +.+........      .+....+++++++||.+||..||++||++
T Consensus       259 ~~l~el~tg~~Pf~~------------~~~~---~~~~~~~~~~~------~~~~~~~s~~~~~li~~~L~~dP~~Rps~  317 (478)
T PTZ00267        259 VILYELLTLHRPFKG------------PSQR---EIMQQVLYGKY------DPFPCPVSSGMKALLDPLLSKNPALRPTT  317 (478)
T ss_pred             HHHHHHHhCCCCCCC------------CCHH---HHHHHHHhCCC------CCCCccCCHHHHHHHHHHhccChhhCcCH
Confidence            999999999999852            1221   12222221111      11234578899999999999999999999


Q ss_pred             HHHHcCCCCCCC
Q 005958          392 LDALRHPFLCGP  403 (667)
Q Consensus       392 ~elL~HPwf~~~  403 (667)
                      ++++.|||++..
T Consensus       318 ~~~l~~~~~~~~  329 (478)
T PTZ00267        318 QQLLHTEFLKYV  329 (478)
T ss_pred             HHHHhCHHHHHH
Confidence            999999999754

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=100.00  E-value=7.6e-39  Score=341.50  Aligned_cols=266  Identities=15%  Similarity=0.103  Sum_probs=194.0

Q ss_pred             EEeEeccC--CCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           90 ILDRVSIG--LSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        90 i~~~LG~G--~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      ++++||+|  +||    +||++.++.     +++.||+|++...    ...+.+.+|+++++.++      ||||+++++
T Consensus         2 ~~~~ig~G~~~~~----~v~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~------hpniv~~~~   66 (327)
T cd08227           2 LLTVIGRGFEDLM----TVNLARYKP-----TGEYVTVRRINLEACTNEMVTFLQGELHVSKLFN------HPNIVPYRA   66 (327)
T ss_pred             hhhhccccccceE----EEEEEeecc-----cCcEEEEEEechhhccHHHHHHHHHHHHHHHhcC------CCCeeeEEE
Confidence            56889999  556    999999998     8999999999753    22345678999999994      999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++.     .++..|+||| |+++|+|.+++..+..       ..+++                    ..++.++.||+.|
T Consensus        67 ~~~-----~~~~~~lv~e-~~~~~~l~~~~~~~~~-------~~l~~--------------------~~~~~i~~qi~~~  113 (327)
T cd08227          67 TFI-----ADNELWVVTS-FMAYGSAKDLICTHFM-------DGMSE--------------------LAIAYILQGVLKA  113 (327)
T ss_pred             EEE-----ECCEEEEEEe-ccCCCcHHHHHHhhcc-------CCCCH--------------------HHHHHHHHHHHHH
Confidence            998     7789999999 9999999999976420       12343                    4578899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC----------------CCCCCCCcccccCC-CCCCchhh
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE----------------DGPNNSSPDSNMDR-RQMMIAFD  306 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~----------------~~~~Y~APE~l~~~-~~ys~ksD  306 (667)
                      |+|||++||+||||||+|||++. ++.++++|||.+.....                ....|+|||++.+. ..|+.++|
T Consensus       114 L~~LH~~~iiH~dlkp~Nil~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~D  192 (327)
T cd08227         114 LDYIHHMGYVHRSVKASHILISV-DGKVYLSGLRSNLSMINHGQRLRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSD  192 (327)
T ss_pred             HHHHHHCCEecCCCChhhEEEec-CCcEEEcccchhhccccccccccccccccccccceecccChHHhhcccCCCCchhh
Confidence            99999999999999999999998 88999999986543211                11459999976643 46899999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhhhhhhh-hhccCCChhHHH--HHHHHHhcc---------------------CCCCCCCC
Q 005958          307 MRCVGFMMAKMVLRELMDPLIFTKFKS-FLTKGIDPSCLR--EFLLQVLNR---------------------NSSSGNTG  362 (667)
Q Consensus       307 IWSLGviLyemltG~~PF~~~~~~~~~-~~~~g~~~~~l~--~~~~~~~~~---------------------~~~~~~~~  362 (667)
                      ||||||++|||++|++||......... ....+..+....  ......+..                     ........
T Consensus       193 iwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (327)
T cd08227         193 IYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTTTIPAEELTMKPSRSGANSGLGESTTVSTPRPSNGESSS  272 (327)
T ss_pred             HHHHHHHHHHHHHCCCCCCCcchhHHHHHHhcCCccccccccchhhhhcccCCcccCCcCCCCcccccCCcCccccCCcc
Confidence            999999999999999999632111000 001111100000  000000000                     00000000


Q ss_pred             cccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          363 FQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       363 ~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      .+....+++++++||.+||++||++|||++|+|+||||+...
T Consensus       273 ~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~ell~~p~f~~~~  314 (327)
T cd08227         273 HPYNRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSFFKQIK  314 (327)
T ss_pred             cccccccCHHHHHHHHHHHhhCchhcCCHHHHhcChhhhhcc
Confidence            112234578999999999999999999999999999998754

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=1.2e-38  Score=359.34  Aligned_cols=257  Identities=16%  Similarity=0.167  Sum_probs=201.9

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      ...++|++.+.||+|+||    +||+|.+..     +++.||||++...    .......+|+.++..+      .|+||
T Consensus        29 ~~~~rY~i~~~LG~G~fG----~Vy~a~~~~-----~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~------~h~~i   93 (496)
T PTZ00283         29 EQAKKYWISRVLGSGATG----TVLCAKRVS-----DGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNC------DFFSI   93 (496)
T ss_pred             ccCCCEEEEEEEecCCCE----EEEEEEEcC-----CCCEEEEEEEecccCCHHHHHHHHHHHHHHhcC------CCCcE
Confidence            344799999999999999    999999987     7999999998653    2234567899999888      49999


Q ss_pred             eEEEEEEEeccc---CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          159 MQVHGYVSSHTT---SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       159 v~l~~~~~~~~~---~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      +++++.+.....   .....+++||| |+++|+|.++|..+...     ...++|                    ..++.
T Consensus        94 v~~~~~~~~~~~~~~~~~~~i~lV~E-y~~~gsL~~~l~~~~~~-----~~~l~e--------------------~~~~~  147 (496)
T PTZ00283         94 VKCHEDFAKKDPRNPENVLMIALVLD-YANAGDLRQEIKSRAKT-----NRTFRE--------------------HEAGL  147 (496)
T ss_pred             EEeecceecccccCcccceEEEEEEe-CCCCCcHHHHHHHhhcc-----CCCCCH--------------------HHHHH
Confidence            999988763211   11225789999 99999999999764211     113444                    45778


Q ss_pred             HHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-----------CCCCCCCcccccCCCCCCch
Q 005958          236 LMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-----------DGPNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       236 i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-----------~~~~Y~APE~l~~~~~ys~k  304 (667)
                      ++.|++.||.|||++||+||||||+|||++. ++.+||+|||+++.+..           +.+.|+|||++ ....|+.+
T Consensus       148 i~~qll~aL~~lH~~~IiHrDLKP~NILl~~-~~~vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~-~~~~~s~k  225 (496)
T PTZ00283        148 LFIQVLLAVHHVHSKHMIHRDIKSANILLCS-NGLVKLGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIW-RRKPYSKK  225 (496)
T ss_pred             HHHHHHHHHHHHHhCCEecCCCCHHHEEEeC-CCCEEEEecccCeeccccccccccccccCCcceeCHHHh-CCCCCCcH
Confidence            9999999999999999999999999999998 89999999999875432           23679999955 44569999


Q ss_pred             hhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          305 FDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       305 sDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      +|||||||++|||++|+.||..            ....   +.+........      .+..+.+++++.+||.+||+.|
T Consensus       226 ~DVwSlGvilyeLltG~~Pf~~------------~~~~---~~~~~~~~~~~------~~~~~~~~~~l~~li~~~L~~d  284 (496)
T PTZ00283        226 ADMFSLGVLLYELLTLKRPFDG------------ENME---EVMHKTLAGRY------DPLPPSISPEMQEIVTALLSSD  284 (496)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCC------------CCHH---HHHHHHhcCCC------CCCCCCCCHHHHHHHHHHcccC
Confidence            9999999999999999999852            2221   22222222111      1234567899999999999999


Q ss_pred             cCCCCCHHHHHcCCCCCCC
Q 005958          385 PSKRISCLDALRHPFLCGP  403 (667)
Q Consensus       385 P~kRpSa~elL~HPwf~~~  403 (667)
                      |++||++.++++|||++..
T Consensus       285 P~~RPs~~ell~~p~~~~~  303 (496)
T PTZ00283        285 PKRRPSSSKLLNMPICKLF  303 (496)
T ss_pred             hhhCcCHHHHHhCHHHHHh
Confidence            9999999999999998764

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=6.6e-39  Score=362.13  Aligned_cols=253  Identities=19%  Similarity=0.186  Sum_probs=203.6

Q ss_pred             CcccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCC
Q 005958           78 GHVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        78 ~~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      +....+.-.++++.+.|.+|+|+    .||+|++..     .+..||+|++-..  ...+.+.+||++|++|+     +|
T Consensus        29 G~~~~Vg~~~v~V~~vLAEGGFa----~VYla~~~~-----~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~-----gh   94 (738)
T KOG1989|consen   29 GQTFTVGSHRVTVEKVLAEGGFA----QVYLAQDVK-----GGKKYALKRMYVNDEEALNAVKREIDIMKLLS-----GH   94 (738)
T ss_pred             ceEEEECCEEEEEEEEEccCCcE----EEEEEEecC-----CCceeeeeeeecCCHHHHHHHHHHHHHHHHhc-----CC
Confidence            35566666788999999999999    999999997     5699999998653  33456799999999999     89


Q ss_pred             CcceEEEEE-EEecccCC-CCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHH
Q 005958          156 SYSMQVHGY-VSSHTTSG-RSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLI  233 (667)
Q Consensus       156 pnIv~l~~~-~~~~~~~~-~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i  233 (667)
                      +|||.+++. ........ .-.++|+|| ||.||.|-|+|..+.       ..+|+|.                    .|
T Consensus        95 ~nIV~yidss~~~~~~~~~~~EvllLmE-yC~gg~Lvd~mn~Rl-------q~~lte~--------------------eV  146 (738)
T KOG1989|consen   95 KNIVSYIDSSAINRSSNNGVWEVLLLME-YCKGGSLVDFMNTRL-------QTRLTED--------------------EV  146 (738)
T ss_pred             CceeeEeccccccccCCCceeEEEeehh-hccCCcHHHHHHHHH-------hccCChH--------------------HH
Confidence            999999994 33222222 357899999 999999999998643       1246664                    57


Q ss_pred             HHHHHHHHHHHHHHHHCC--CcccCCCCCcEEEcCCCCeEEEeeecccccccCC------------------CCCCCCcc
Q 005958          234 RLLMRDLLIGVNYLHSHG--LAHTELRLENVHISPVDRHIKVGILGNAADFYED------------------GPNNSSPD  293 (667)
Q Consensus       234 ~~i~~QIl~aL~yLHs~g--IvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------------------~~~Y~APE  293 (667)
                      ..|++|+++|+.+||...  |||||||-|||||+. ++++||||||.|...-..                  .+.|+|||
T Consensus       147 LkIf~dv~~AVa~mH~~~pPiIHRDLKiENvLls~-~g~~KLCDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPE  225 (738)
T KOG1989|consen  147 LKIFYDVCEAVAAMHYLKPPIIHRDLKIENVLLSA-DGNYKLCDFGSATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPE  225 (738)
T ss_pred             HHHHHHHHHHHHHHhcCCCccchhhhhhhheEEcC-CCCEEeCcccccccccCCCccHHHHHHHHHHHHhhCCccccChH
Confidence            789999999999999998  999999999999999 899999999999743211                  27899999


Q ss_pred             ccc--CCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCH
Q 005958          294 SNM--DRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWG  371 (667)
Q Consensus       294 ~l~--~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~  371 (667)
                      .+-  .+.++++|+|||||||+||.|++...||.+..++.                   ++.     ....++..++++.
T Consensus       226 MIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~la-------------------Iln-----g~Y~~P~~p~ys~  281 (738)
T KOG1989|consen  226 MIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGKLA-------------------ILN-----GNYSFPPFPNYSD  281 (738)
T ss_pred             HHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCccee-------------------EEe-----ccccCCCCccHHH
Confidence            643  56678999999999999999999999996331110                   111     1223455578899


Q ss_pred             HHHHHHHHhhhcCcCCCCCHHHHHcC
Q 005958          372 AGWNLLSLLLATKPSKRISCLDALRH  397 (667)
Q Consensus       372 e~~dLI~~~L~~DP~kRpSa~elL~H  397 (667)
                      .+++||..||+.||++||++-|++.+
T Consensus       282 ~l~~LI~~mL~~nP~~RPnI~Qv~~~  307 (738)
T KOG1989|consen  282 RLKDLIRTMLQPNPDERPNIYQVLEE  307 (738)
T ss_pred             HHHHHHHHHhccCcccCCCHHHHHHH
Confidence            99999999999999999999998854

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=100.00  E-value=3.2e-38  Score=330.40  Aligned_cols=246  Identities=20%  Similarity=0.279  Sum_probs=203.3

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ++|++.+.||+|+||    .||+|.+..     +++.||+|++....     ..+.+.+|+++++.+      +||||++
T Consensus         1 ~~y~~~~~ig~g~~~----~vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~   65 (290)
T cd05580           1 DDFEFIKTLGTGSFG----RVMLVRHKG-----SGKYYALKILSKAKIVKLKQVEHVLNEKRILQSI------RHPFLVN   65 (290)
T ss_pred             CceEEEEEeecCCCe----EEEEEEEcC-----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhC------CCCCccc
Confidence            479999999999999    999999987     78999999987532     234568899999999      4999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     +.+.+|+||| |+++|+|.+++...+         .+++                    ..+..++.||
T Consensus        66 ~~~~~~-----~~~~~~~v~e-~~~~~~L~~~~~~~~---------~l~~--------------------~~~~~~~~qi  110 (290)
T cd05580          66 LYGSFQ-----DDSNLYLVME-YVPGGELFSHLRKSG---------RFPE--------------------PVARFYAAQV  110 (290)
T ss_pred             eeeEEE-----cCCeEEEEEe-cCCCCCHHHHHHHcC---------CCCH--------------------HHHHHHHHHH
Confidence            999998     7889999999 998889999998754         4444                    4577899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC------CCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED------GPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      +.||.|||++||+|+||+|.|||++. ++.+||+|||++......      .+.|+|||.+.+ ..++.++||||||+++
T Consensus       111 l~~l~~lH~~~i~H~dl~p~nili~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~il  188 (290)
T cd05580         111 VLALEYLHSLDIVYRDLKPENLLLDS-DGYIKITDFGFAKRVKGRTYTLCGTPEYLAPEIILS-KGYGKAVDWWALGILI  188 (290)
T ss_pred             HHHHHHHHHCCEecCCCCHHHEEECC-CCCEEEeeCCCccccCCCCCCCCCCccccChhhhcC-CCCCccccHHHHHHHH
Confidence            99999999999999999999999998 899999999999865433      367999996544 4688999999999999


Q ss_pred             HHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC-----
Q 005958          315 AKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI-----  389 (667)
Q Consensus       315 yemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp-----  389 (667)
                      |+|++|..||...            ......+   .+...       ........++.++++|.+||+.||.+|+     
T Consensus       189 ~~l~~g~~p~~~~------------~~~~~~~---~~~~~-------~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~~  246 (290)
T cd05580         189 YEMLAGYPPFFDD------------NPIQIYE---KILEG-------KVRFPSFFSPDAKDLIRNLLQVDLTKRLGNLKN  246 (290)
T ss_pred             HHHHhCCCCCCCC------------CHHHHHH---HHhcC-------CccCCccCCHHHHHHHHHHccCCHHHccCcccC
Confidence            9999999998522            1111111   11111       1123345678999999999999999999     


Q ss_pred             CHHHHHcCCCCCCCCC
Q 005958          390 SCLDALRHPFLCGPRW  405 (667)
Q Consensus       390 Sa~elL~HPwf~~~~~  405 (667)
                      +++|+++||||....|
T Consensus       247 ~~~~l~~~~~~~~~~~  262 (290)
T cd05580         247 GVNDIKNHPWFAGIDW  262 (290)
T ss_pred             CHHHHHcCcccccCCH
Confidence            9999999999988775

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=100.00  E-value=2.8e-38  Score=334.29  Aligned_cols=262  Identities=17%  Similarity=0.243  Sum_probs=201.8

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ++|++.+.||+|+||    .||+|.+..     ++..||+|.+...   .....+.+|++++++++      ||||++++
T Consensus         1 ~~~~~~~~lg~G~~g----~v~~~~~~~-----~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~------h~~iv~~~   65 (308)
T cd06615           1 DDFEKLGELGAGNGG----VVTKVLHRP-----SGLIMARKLIHLEIKPAIRNQIIRELKVLHECN------SPYIVGFY   65 (308)
T ss_pred             CCceEEeeccCCCCe----EEEEEEEcC-----CCeEEEEEEeccccCHHHHHHHHHHHHHHHhCC------CCCCCeEE
Confidence            479999999999999    999999987     7899999998643   22345788999999995      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     ..+.+|+||| |+++|+|.+++.+.+         .+++                    ..++.++.||+.
T Consensus        66 ~~~~-----~~~~~~lv~e-y~~~~~L~~~l~~~~---------~~~~--------------------~~~~~~~~~i~~  110 (308)
T cd06615          66 GAFY-----SDGEISICME-HMDGGSLDQVLKKAG---------RIPE--------------------NILGKISIAVLR  110 (308)
T ss_pred             EEEe-----eCCEEEEEee-ccCCCcHHHHHHhcC---------CCCH--------------------HHHHHHHHHHHH
Confidence            9998     7789999999 999999999998754         3444                    457789999999


Q ss_pred             HHHHHHH-CCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-------CCCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          243 GVNYLHS-HGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       243 aL~yLHs-~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-------~~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      ||.|||+ .+|+||||||+|||++. ++.+||+|||++.....       +...|+|||.+ .+..++.++|||||||++
T Consensus       111 ~l~~lH~~~~i~H~dl~p~nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~aPE~~-~~~~~~~~~DiwslG~~l  188 (308)
T cd06615         111 GLTYLREKHKIMHRDVKPSNILVNS-RGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERL-QGTHYTVQSDIWSLGLSL  188 (308)
T ss_pred             HHHHHHhhCCEEECCCChHHEEEec-CCcEEEccCCCcccccccccccCCCCcCccChhHh-cCCCCCccchHHHHHHHH
Confidence            9999998 59999999999999998 89999999999875533       23689999965 445689999999999999


Q ss_pred             HHHHhCCCCChhhhh--hhhhhhcc---CCC----------------hhHHHHHHHHHhccCCCCCCCCcccccCCCHHH
Q 005958          315 AKMVLRELMDPLIFT--KFKSFLTK---GID----------------PSCLREFLLQVLNRNSSSGNTGFQILDRNWGAG  373 (667)
Q Consensus       315 yemltG~~PF~~~~~--~~~~~~~~---g~~----------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~  373 (667)
                      |+|++|+.||.....  ....+...   +..                .....+..........+    .. ....+++++
T Consensus       189 ~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~  263 (308)
T cd06615         189 VEMAIGRYPIPPPDAKELEAMFGRPVSEGEAKESHRPVSGHPPDSPRPMAIFELLDYIVNEPPP----KL-PSGAFSDEF  263 (308)
T ss_pred             HHHHhCCCCCCCcchhhHHHhhcCccccccccCCcccccCCCCCccchhhHHHHHHHHhcCCCc----cC-cCcccCHHH
Confidence            999999999863211  11111000   000                00111111111111111    01 112367899


Q ss_pred             HHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          374 WNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       374 ~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      ++||.+||..||++|||+.++++||||....
T Consensus       264 ~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~~  294 (308)
T cd06615         264 QDFVDKCLKKNPKERADLKELTKHPFIKRAE  294 (308)
T ss_pred             HHHHHHHccCChhhCcCHHHHhcChhhhhcc
Confidence            9999999999999999999999999997743

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=100.00  E-value=3.1e-38  Score=327.35  Aligned_cols=264  Identities=20%  Similarity=0.265  Sum_probs=200.0

Q ss_pred             eEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEEEEE
Q 005958           88 FKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGY  164 (667)
Q Consensus        88 y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~  164 (667)
                      |++.+.||+|+||    .||+|.+..     +++.||+|+++...   ......+|+.+++++.     +|+||++++++
T Consensus         1 y~~~~~lg~g~~~----~v~~~~~~~-----~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~-----~h~~i~~~~~~   66 (282)
T cd07831           1 YKILGKIGEGTFS----EVLKAQSRK-----TGKYYAIKCMKKHFKSLEQVNNLREIQALRRLS-----PHPNILRLIEV   66 (282)
T ss_pred             CceEeeccccccc----eEEEEEEcC-----CCcEEEEEEehhccCCchhhhHHHHHHHHhhcC-----CCCCccceEEE
Confidence            7889999999999    999999987     78999999987531   2223467899999886     69999999999


Q ss_pred             EEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHH
Q 005958          165 VSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGV  244 (667)
Q Consensus       165 ~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL  244 (667)
                      +.+.   ..+.+++||| |+++ +|.+++....        ..+++                    ..++.++.||+.||
T Consensus        67 ~~~~---~~~~~~lv~e-~~~~-~l~~~l~~~~--------~~~~~--------------------~~~~~~~~qi~~~L  113 (282)
T cd07831          67 LFDR---KTGRLALVFE-LMDM-NLYELIKGRK--------RPLPE--------------------KRVKSYMYQLLKSL  113 (282)
T ss_pred             EecC---CCCcEEEEEe-cCCc-cHHHHHHhcc--------CCCCH--------------------HHHHHHHHHHHHHH
Confidence            9832   3378999999 9986 9998887632        13444                    45788999999999


Q ss_pred             HHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHHHHHHHH
Q 005958          245 NYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAK  316 (667)
Q Consensus       245 ~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSLGviLye  316 (667)
                      .|||++||+||||||+||+++.  +.+||+|||++......        ...|+|||.+.....++.++||||+||++||
T Consensus       114 ~~LH~~~i~H~dl~p~ni~l~~--~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~e  191 (282)
T cd07831         114 DHMHRNGIFHRDIKPENILIKD--DILKLADFGSCRGIYSKPPYTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFE  191 (282)
T ss_pred             HHHHHCCceecccCHHHEEEcC--CCeEEEecccccccccCCCcCCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHH
Confidence            9999999999999999999997  89999999999765432        2569999976666678999999999999999


Q ss_pred             HHhCCCCChhhh---hhhhhhhccCCChhHHHHHHHHHhccCCCC---CCC-CcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          317 MVLRELMDPLIF---TKFKSFLTKGIDPSCLREFLLQVLNRNSSS---GNT-GFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       317 mltG~~PF~~~~---~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~---~~~-~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      |++|.+||+...   .........+.+...+..............   ... ........+.++++||.+||.+||++||
T Consensus       192 l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~  271 (282)
T cd07831         192 ILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERI  271 (282)
T ss_pred             HHcCCcCCCCCCHHHHHHHHHHHcCCCCHHHHHhhcccccccccCcccccccHHHHcccccHHHHHHHHHHhccCccccc
Confidence            999999997422   122222233444443322211110000000   000 0012345688999999999999999999


Q ss_pred             CHHHHHcCCCC
Q 005958          390 SCLDALRHPFL  400 (667)
Q Consensus       390 Sa~elL~HPwf  400 (667)
                      ++.++++||||
T Consensus       272 ~~~~~l~~~~~  282 (282)
T cd07831         272 TAKQALRHPYF  282 (282)
T ss_pred             CHHHHhhCCCC
Confidence            99999999998

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=100.00  E-value=1.7e-38  Score=340.00  Aligned_cols=271  Identities=18%  Similarity=0.263  Sum_probs=205.7

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ++|++.+.||+|+||    .||+|.+..     +++.||||++...   .......+|+.++++++      ||||++++
T Consensus         5 ~~y~i~~~lg~G~~g----~vy~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~------h~niv~~~   69 (336)
T cd07849           5 PRYQNLSYIGEGAYG----MVCSATHKP-----TGVKVAIKKISPFEHQTFCQRTLREIKILRRFK------HENIIGIL   69 (336)
T ss_pred             cceEEEEEEEecCCe----EEEEEEEcC-----CCCeEEEEEecccccchhHHHHHHHHHHHHhCC------CCCcCchh
Confidence            689999999999999    999999987     7999999998642   22345678999999995      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++...........|+||| |+++ +|.+++...          .+++                    ..++.++.||+.
T Consensus        70 ~~~~~~~~~~~~~~~lv~e-~~~~-~l~~~~~~~----------~l~~--------------------~~~~~i~~ql~~  117 (336)
T cd07849          70 DIIRPPSFESFNDVYIVQE-LMET-DLYKLIKTQ----------HLSN--------------------DHIQYFLYQILR  117 (336)
T ss_pred             heeecccccccceEEEEeh-hccc-CHHHHHhcC----------CCCH--------------------HHHHHHHHHHHH
Confidence            9887443334467899999 9987 999888653          3554                    457889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC------------CCCCCCcccccCCCCCCchhhHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED------------GPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------------~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      ||.|||++||+||||||+|||++. ++.+||+|||++......            .+.|+|||.+.+...++.++||||+
T Consensus       118 aL~~LH~~~ivH~dlkp~Nill~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dvwsl  196 (336)
T cd07849         118 GLKYIHSANVLHRDLKPSNLLLNT-NCDLKICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSV  196 (336)
T ss_pred             HHHHHHhCCeeccCCCHHHEEECC-CCCEEECcccceeeccccccccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHH
Confidence            999999999999999999999998 899999999998765321            2569999977666778999999999


Q ss_pred             HHHHHHHHhCCCCChhhh---hhhhhhhccCCChh-HHHHHHHH----HhccCCCCCCCCc-ccccCCCHHHHHHHHHhh
Q 005958          311 GFMMAKMVLRELMDPLIF---TKFKSFLTKGIDPS-CLREFLLQ----VLNRNSSSGNTGF-QILDRNWGAGWNLLSLLL  381 (667)
Q Consensus       311 GviLyemltG~~PF~~~~---~~~~~~~~~g~~~~-~l~~~~~~----~~~~~~~~~~~~~-~~~~~~s~e~~dLI~~~L  381 (667)
                      ||++|+|++|++||+...   .........+.+.. .+......    ............. ...+..++++.+||.+||
T Consensus       197 Gvil~el~~G~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  276 (336)
T cd07849         197 GCILAEMLSNRPLFPGKDYLHQLNLILGVLGTPSQEDLNCIISLRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKML  276 (336)
T ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhchhhhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHc
Confidence            999999999999997422   11122222332222 12111100    0000000000001 123456889999999999


Q ss_pred             hcCcCCCCCHHHHHcCCCCCCCC
Q 005958          382 ATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       382 ~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      +.||++|||+.|+++||||....
T Consensus       277 ~~dP~~Rpt~~e~l~hp~~~~~~  299 (336)
T cd07849         277 TFNPHKRITVEEALAHPYLEQYH  299 (336)
T ss_pred             CCChhhCcCHHHHhcCccccccC
Confidence            99999999999999999998765

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=100.00  E-value=3.5e-38  Score=330.13  Aligned_cols=252  Identities=20%  Similarity=0.257  Sum_probs=202.0

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--hHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      +.|++++.||.|+||    .||+|.+..     +++.||+|.+....  ..+.+.+|+.+++.+.      ||||+++++
T Consensus        12 ~~y~i~~~lg~g~~g----~vy~~~~~~-----~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~~~~   76 (292)
T cd06644          12 EVWEIIGELGDGAFG----KVYKAKNKE-----TGALAAAKVIETKSEEELEDYMVEIEILATCN------HPYIVKLLG   76 (292)
T ss_pred             hhhhhhheecCCCCe----EEEEEEECC-----CCceEEEEEeccCCHHHHHHHHHHHHHHHhCC------CCcEeeeEE
Confidence            679999999999999    999999987     78999999987532  3345678999999994      999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      .+.     ..+.+|+||| |+++++|..++.+..        ..+++                    ..+..++.||+.|
T Consensus        77 ~~~-----~~~~~~lv~e-~~~~~~l~~~~~~~~--------~~l~~--------------------~~~~~~~~ql~~~  122 (292)
T cd06644          77 AFY-----WDGKLWIMIE-FCPGGAVDAIMLELD--------RGLTE--------------------PQIQVICRQMLEA  122 (292)
T ss_pred             EEE-----eCCeEEEEEe-cCCCCcHHHHHHhhc--------CCCCH--------------------HHHHHHHHHHHHH
Confidence            998     6789999999 999999998876532        13444                    4578899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCccccc----CCCCCCchhhHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNM----DRRQMMIAFDMRCV  310 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~----~~~~ys~ksDIWSL  310 (667)
                      |.|||++||+||||||+||+++. ++.+||+|||++.....         +.+.|+|||.+.    ....++.++|||||
T Consensus       123 l~~lH~~~i~H~dlkp~Nili~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~sl  201 (292)
T cd06644         123 LQYLHSMKIIHRDLKAGNVLLTL-DGDIKLADFGVSAKNVKTLQRRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSL  201 (292)
T ss_pred             HHHHhcCCeeecCCCcceEEEcC-CCCEEEccCccceeccccccccceecCCccccCceeeccccccCCCCCchhhhHhH
Confidence            99999999999999999999998 89999999999865432         226799999764    24457889999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      ||++|||++|.+||....            +.   +..........+    .......++.++.+||.+||..||++||+
T Consensus       202 G~il~el~~g~~p~~~~~------------~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~li~~~l~~~p~~Rp~  262 (292)
T cd06644         202 GITLIEMAQIEPPHHELN------------PM---RVLLKIAKSEPP----TLSQPSKWSMEFRDFLKTALDKHPETRPS  262 (292)
T ss_pred             HHHHHHHhcCCCCCcccc------------HH---HHHHHHhcCCCc----cCCCCcccCHHHHHHHHHHhcCCcccCcC
Confidence            999999999999985211            11   111111111111    12223456789999999999999999999


Q ss_pred             HHHHHcCCCCCCCCCC
Q 005958          391 CLDALRHPFLCGPRWR  406 (667)
Q Consensus       391 a~elL~HPwf~~~~~~  406 (667)
                      ++++++||||....+.
T Consensus       263 ~~~il~~~~~~~~~~~  278 (292)
T cd06644         263 AAQLLEHPFVSSVTSN  278 (292)
T ss_pred             HHHHhcCccccccccc
Confidence            9999999999887743

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=100.00  E-value=6.3e-38  Score=327.77  Aligned_cols=257  Identities=15%  Similarity=0.180  Sum_probs=200.4

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      .++|++.+.||+|+||    .||+|.+..     +++.+|+|.+.... ......+|+.+++++.     +||||+++++
T Consensus        21 ~~~y~~~~~l~~g~~~----~vy~~~~~~-----~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~-----~h~ni~~~~~   86 (291)
T cd06639          21 TDTWEIIETIGKGTYG----KVYKVTNKK-----DGSLAAVKILDPISDVDEEIEAEYNILQSLP-----NHPNVVKFYG   86 (291)
T ss_pred             CCCeEEEEEeecCCCe----EEEEEEECC-----CCCEEEEEEecccccHHHHHHHHHHHHHHhc-----CCCCeEEEEE
Confidence            5889999999999999    999999987     78999999987532 3456678999999995     5999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++........+..|+||| |+++|+|.++++....     ....+++                    ..++.++.|++.|
T Consensus        87 ~~~~~~~~~~~~~~lv~e-y~~~~sL~~~~~~~~~-----~~~~~~~--------------------~~~~~~~~qi~~a  140 (291)
T cd06639          87 MFYKADKLVGGQLWLVLE-LCNGGSVTELVKGLLI-----CGQRLDE--------------------AMISYILYGALLG  140 (291)
T ss_pred             EEEeccccCCCeeEEEEE-ECCCCcHHHHHHHhhh-----cCCCCCH--------------------HHHHHHHHHHHHH
Confidence            987442223467999999 9999999999874210     0113343                    5678899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCC----CCCchhhHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRR----QMMIAFDMRCV  310 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~----~ys~ksDIWSL  310 (667)
                      |+|||++||+||||||+||+++. ++.+||+|||++......         ...|+|||.+....    .++.++|||||
T Consensus       141 l~~lH~~~ivH~dlkp~nili~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~sl  219 (291)
T cd06639         141 LQHLHNNRIIHRDVKGNNILLTT-EGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSL  219 (291)
T ss_pred             HHHHHhCCeeccCCCHHHEEEcC-CCCEEEeecccchhcccccccccCccCCccccChhhhcCCCCcccccCCccchHHH
Confidence            99999999999999999999998 889999999998754321         25699999764332    36889999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      ||++|||++|++||......           ..+..    ......+    ........+.++.+||.+||+.||++||+
T Consensus       220 Gvi~~el~~g~~p~~~~~~~-----------~~~~~----~~~~~~~----~~~~~~~~~~~l~~li~~~l~~~p~~Rps  280 (291)
T cd06639         220 GITAIELGDGDPPLFDMHPV-----------KTLFK----IPRNPPP----TLLHPEKWCRSFNHFISQCLIKDFEARPS  280 (291)
T ss_pred             HHHHHHHhhCCCCCCCCcHH-----------HHHHH----HhcCCCC----CCCcccccCHHHHHHHHHHhhcChhhCcC
Confidence            99999999999998532111           11111    1111111    11223446678999999999999999999


Q ss_pred             HHHHHcCCCCC
Q 005958          391 CLDALRHPFLC  401 (667)
Q Consensus       391 a~elL~HPwf~  401 (667)
                      +.++++||||+
T Consensus       281 ~~~il~~~~~~  291 (291)
T cd06639         281 VTHLLEHPFIK  291 (291)
T ss_pred             HHHHhcCcccC
Confidence            99999999995

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=100.00  E-value=4.5e-38  Score=328.90  Aligned_cols=251  Identities=16%  Similarity=0.186  Sum_probs=200.4

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      .|+..+.||+|+||    +||+|.+..     +++.||+|.+....     ......+|+++|+.++      |+||+.+
T Consensus         1 ~~~~~~~lg~G~~g----~vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~------~~~i~~~   65 (285)
T cd05632           1 TFRQYRVLGKGGFG----EVCACQVRA-----TGKMYACKRLEKKRIKKRKGESMALNEKQILEKVN------SQFVVNL   65 (285)
T ss_pred             CceEEEEEecCCCe----EEEEEEECC-----CCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC------CcCceeE
Confidence            37888999999999    999999998     79999999986532     2234578999999994      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     .++..++||| |+.+|+|.+++...+.       ..+++                    ..+..++.|++
T Consensus        66 ~~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~~~-------~~~~~--------------------~~~~~~~~ql~  112 (285)
T cd05632          66 AYAYE-----TKDALCLVLT-IMNGGDLKFHIYNMGN-------PGFEE--------------------ERALFYAAEIL  112 (285)
T ss_pred             EEEEe-----cCCEEEEEEE-eccCccHHHHHHHhcC-------CCCCH--------------------HHHHHHHHHHH
Confidence            99998     7789999999 9999999998865320       13444                    45788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC--------CCCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE--------DGPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~--------~~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      .||.|||++||+||||||+||+++. ++.+||+|||++.....        +...|+|||.+. ...++.++|+||+||+
T Consensus       113 ~~l~~lH~~~iiH~dikp~Nili~~-~~~~kl~Dfg~~~~~~~~~~~~~~~g~~~~~aPE~~~-~~~~~~~~Di~slG~~  190 (285)
T cd05632         113 CGLEDLHRENTVYRDLKPENILLDD-YGHIRISDLGLAVKIPEGESIRGRVGTVGYMAPEVLN-NQRYTLSPDYWGLGCL  190 (285)
T ss_pred             HHHHHHHhCCeeecCCCHHHEEECC-CCCEEEecCCcceecCCCCcccCCCCCcCccChHHhc-CCCCCcccchHHHHHH
Confidence            9999999999999999999999998 78999999999865432        236899999664 4568999999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC---
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS---  390 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS---  390 (667)
                      +|+|++|.+||...            ......+.+........      .......++++.+|+.+||+.||++||+   
T Consensus       191 l~~l~~g~~P~~~~------------~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~  252 (285)
T cd05632         191 IYEMIEGQSPFRGR------------KEKVKREEVDRRVLETE------EVYSAKFSEEAKSICKMLLTKDPKQRLGCQE  252 (285)
T ss_pred             HHHHHhCCCCCCCC------------CHHHHHHHHHHhhhccc------cccCccCCHHHHHHHHHHccCCHhHcCCCcc
Confidence            99999999998522            11111111111111110      1123457789999999999999999999   


Q ss_pred             --HHHHHcCCCCCCCCC
Q 005958          391 --CLDALRHPFLCGPRW  405 (667)
Q Consensus       391 --a~elL~HPwf~~~~~  405 (667)
                        +.++++||||+...+
T Consensus       253 ~~~~~l~~~~~~~~~~~  269 (285)
T cd05632         253 EGAGEVKRHPFFRNMNF  269 (285)
T ss_pred             cChHHHHcChhhhcCCH
Confidence              889999999999763

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-39  Score=349.85  Aligned_cols=245  Identities=17%  Similarity=0.204  Sum_probs=202.4

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      ..+.+....+++++.||+|.||    .||+|.+..      ...||+|.++... ..+.+.+|+++|++|+      |+|
T Consensus       199 d~wei~r~~l~l~~~LG~G~FG----~V~~g~~~~------~~~vavk~ik~~~m~~~~f~~Ea~iMk~L~------H~~  262 (468)
T KOG0197|consen  199 DPWEIPREELKLIRELGSGQFG----EVWLGKWNG------STKVAVKTIKEGSMSPEAFLREAQIMKKLR------HEK  262 (468)
T ss_pred             CCeeecHHHHHHHHHhcCCccc----eEEEEEEcC------CCcccceEEeccccChhHHHHHHHHHHhCc------ccC
Confidence            3445556677888999999999    999999995      5689999998743 3467789999999996      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      ||++++++.     .++.+||||| |+..|+|.++|+..+.       ..+.                    ..+...++
T Consensus       263 lV~l~gV~~-----~~~piyIVtE-~m~~GsLl~yLr~~~~-------~~l~--------------------~~~Ll~~a  309 (468)
T KOG0197|consen  263 LVKLYGVCT-----KQEPIYIVTE-YMPKGSLLDYLRTREG-------GLLN--------------------LPQLLDFA  309 (468)
T ss_pred             eEEEEEEEe-----cCCceEEEEE-ecccCcHHHHhhhcCC-------Cccc--------------------hHHHHHHH
Confidence            999999998     6668999999 9999999999997320       1222                    35678899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC----------CCCCCcccccCCCCCCchhhH
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG----------PNNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~----------~~Y~APE~l~~~~~ys~ksDI  307 (667)
                      .||++|++||+++++|||||...||||++ +..+||+|||+|+...++.          ..|.|||.+. ...++.++||
T Consensus       310 ~qIaeGM~YLes~~~IHRDLAARNiLV~~-~~~vKIsDFGLAr~~~d~~Y~~~~~~kfPIkWtAPEa~~-~~~FS~kSDV  387 (468)
T KOG0197|consen  310 AQIAEGMAYLESKNYIHRDLAARNILVDE-DLVVKISDFGLARLIGDDEYTASEGGKFPIKWTAPEALN-YGKFSSKSDV  387 (468)
T ss_pred             HHHHHHHHHHHhCCccchhhhhhheeecc-CceEEEcccccccccCCCceeecCCCCCCceecCHHHHh-hCCcccccce
Confidence            99999999999999999999999999999 8999999999999544432          4588999655 4459999999


Q ss_pred             HHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          308 RCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       308 WSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      |||||+||||+| |+.||+            +.+..++.+.+.+.         ..++.++.+++++.+++..||+.+|+
T Consensus       388 WSFGVlL~E~fT~G~~py~------------~msn~ev~~~le~G---------yRlp~P~~CP~~vY~lM~~CW~~~P~  446 (468)
T KOG0197|consen  388 WSFGVLLWELFTYGRVPYP------------GMSNEEVLELLERG---------YRLPRPEGCPDEVYELMKSCWHEDPE  446 (468)
T ss_pred             eehhhhHHHHhccCCCCCC------------CCCHHHHHHHHhcc---------CcCCCCCCCCHHHHHHHHHHhhCCcc
Confidence            999999999998 888875            44444444544332         23556678999999999999999999


Q ss_pred             CCCCHHHHH
Q 005958          387 KRISCLDAL  395 (667)
Q Consensus       387 kRpSa~elL  395 (667)
                      +|||.+.+.
T Consensus       447 ~RPtF~~L~  455 (468)
T KOG0197|consen  447 DRPTFETLR  455 (468)
T ss_pred             cCCCHHHHH
Confidence            999998654

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.9e-39  Score=353.62  Aligned_cols=246  Identities=22%  Similarity=0.315  Sum_probs=205.7

Q ss_pred             CCe-EEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcc------hhhHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           86 GDF-KILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS------VQAQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        86 ~~y-~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~------~~~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      ++| +...+||+|+|-    +||+|.+..     +|..||.-.++.      ....+++..|+.+|+.|+      ||||
T Consensus        39 gRy~k~~evLGrGafK----tVYka~De~-----~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~------H~NI  103 (632)
T KOG0584|consen   39 GRYLKFDEVLGRGAFK----TVYKAFDEE-----EGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLK------HPNI  103 (632)
T ss_pred             Cceeehhhhcccccce----eeeeccccc-----cchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCC------CCce
Confidence            344 345789999999    999999987     899999765542      233366789999999995      9999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      |++|++|.+.   .+..+.+|+| ++.+|+|+.|+++++.         .+                    +..++.|++
T Consensus       104 irfy~SW~d~---~n~~in~iTE-L~TSGtLr~Y~kk~~~---------vn--------------------~kaik~W~R  150 (632)
T KOG0584|consen  104 IRFYDSWVDT---DNKTINFITE-LFTSGTLREYRKKHRR---------VN--------------------IKAIKSWCR  150 (632)
T ss_pred             eeeeeheecC---CCceeeeeee-cccCCcHHHHHHHhcc---------CC--------------------HHHHHHHHH
Confidence            9999999966   5678999999 9999999999999862         33                    357899999


Q ss_pred             HHHHHHHHHHHCC--CcccCCCCCcEEEcCCCCeEEEeeecccccccC-------CCCCCCCcccccCCCCCCchhhHHH
Q 005958          239 DLLIGVNYLHSHG--LAHTELRLENVHISPVDRHIKVGILGNAADFYE-------DGPNNSSPDSNMDRRQMMIAFDMRC  309 (667)
Q Consensus       239 QIl~aL~yLHs~g--IvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-------~~~~Y~APE~l~~~~~ys~ksDIWS  309 (667)
                      ||+.||.|||++.  |||||||.+||+|+...|.|||+|+|+|.....       ++|.|||||+ . ...|+..+||||
T Consensus       151 QILkGL~yLHs~~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s~aksvIGTPEFMAPEm-Y-EE~YnE~VDVYa  228 (632)
T KOG0584|consen  151 QILKGLVYLHSQDPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKSHAKSVIGTPEFMAPEM-Y-EENYNELVDVYA  228 (632)
T ss_pred             HHHHHhhhhhcCCCCccccccccceEEEcCCcCceeecchhHHHHhhccccceeccCccccChHH-H-hhhcchhhhhhh
Confidence            9999999999996  999999999999998789999999999986654       3499999993 3 467999999999


Q ss_pred             HHHHHHHHHhCCCCChhhhhhhhhhh--ccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          310 VGFMMAKMVLRELMDPLIFTKFKSFL--TKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       310 LGviLyemltG~~PF~~~~~~~~~~~--~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      ||+++.||+|+..||.+.....++|.  ..|..|..+...                     -++++++||.+||.. .++
T Consensus       229 FGMCmLEMvT~eYPYsEC~n~AQIYKKV~SGiKP~sl~kV---------------------~dPevr~fIekCl~~-~~~  286 (632)
T KOG0584|consen  229 FGMCMLEMVTSEYPYSECTNPAQIYKKVTSGIKPAALSKV---------------------KDPEVREFIEKCLAT-KSE  286 (632)
T ss_pred             hhHHHHHHHhccCChhhhCCHHHHHHHHHcCCCHHHhhcc---------------------CCHHHHHHHHHHhcC-chh
Confidence            99999999999999987766555552  334444333222                     257999999999999 999


Q ss_pred             CCCHHHHHcCCCCCCC
Q 005958          388 RISCLDALRHPFLCGP  403 (667)
Q Consensus       388 RpSa~elL~HPwf~~~  403 (667)
                      |+||.|+|+||||+..
T Consensus       287 R~sa~eLL~d~Ff~~d  302 (632)
T KOG0584|consen  287 RLSAKELLKDPFFDED  302 (632)
T ss_pred             ccCHHHHhhChhhccc
Confidence            9999999999999985

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=100.00  E-value=2.8e-38  Score=325.71  Aligned_cols=248  Identities=19%  Similarity=0.229  Sum_probs=197.0

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ..++|++.+.||+|+||    .||+|++..     +++.||+|++...  .......+|+.++++++      ||||+++
T Consensus         7 ~~~~y~~~~~lg~g~~g----~vy~~~~~~-----~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~------h~~ii~~   71 (267)
T cd06646           7 PQHDYELIQRVGSGTYG----DVYKARNLH-----TGELAAVKIIKLEPGDDFSLIQQEIFMVKECK------HCNIVAY   71 (267)
T ss_pred             chhhcchhheeecCCCe----EEEEEEECC-----CCeEEEEEEEecCccchHHHHHHHHHHHHhcC------CCCeeee
Confidence            34789999999999999    999999987     7899999998753  23345678999999994      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     ..+..++||| |+++|+|.+++...+         .+++                    ..+..++.|++
T Consensus        72 ~~~~~-----~~~~~~iv~e-~~~~~~L~~~~~~~~---------~~~~--------------------~~~~~~~~qi~  116 (267)
T cd06646          72 FGSYL-----SREKLWICME-YCGGGSLQDIYHVTG---------PLSE--------------------LQIAYVCRETL  116 (267)
T ss_pred             eEEEE-----eCCEEEEEEe-CCCCCcHHHHHHhcC---------CCCH--------------------HHHHHHHHHHH
Confidence            99998     7789999999 999999999987643         3444                    45778999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCccccc--CCCCCCchhhHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNM--DRRQMMIAFDMRCV  310 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~--~~~~ys~ksDIWSL  310 (667)
                      .||+|||++||+||||||+||+++. ++.+||+|||++......         ...|+|||.+.  ....++.++||||+
T Consensus       117 ~~l~~lH~~~i~H~dl~p~nill~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~  195 (267)
T cd06646         117 QGLAYLHSKGKMHRDIKGANILLTD-NGDVKLADFGVAAKITATIAKRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAV  195 (267)
T ss_pred             HHHHHHHHCCccccCCCHHHEEECC-CCCEEECcCccceeecccccccCccccCccccCHhHcccccCCCCcchhhHHHH
Confidence            9999999999999999999999998 889999999998755321         25799999654  34457889999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      ||++|||++|.+||...........           .    ...  ............++.++.+||.+||..||++|||
T Consensus       196 G~il~el~~g~~p~~~~~~~~~~~~-----------~----~~~--~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~  258 (267)
T cd06646         196 GITAIELAELQPPMFDLHPMRALFL-----------M----SKS--NFQPPKLKDKTKWSSTFHNFVKISLTKNPKKRPT  258 (267)
T ss_pred             HHHHHHHHhCCCCccccchhhhhee-----------e----ecC--CCCCCCCccccccCHHHHHHHHHHhhCChhhCcC
Confidence            9999999999999852211100000           0    000  0000011122356789999999999999999999


Q ss_pred             HHHHHcCCC
Q 005958          391 CLDALRHPF  399 (667)
Q Consensus       391 a~elL~HPw  399 (667)
                      ++++|+|+|
T Consensus       259 ~~~il~~l~  267 (267)
T cd06646         259 AERLLTHLF  267 (267)
T ss_pred             HHHHhcCCC
Confidence            999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-39  Score=342.01  Aligned_cols=258  Identities=17%  Similarity=0.227  Sum_probs=215.2

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-----HHHHHHHHHHHHHHhhccCCCCCc
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-----QRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-----~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      +..+.|..-++||+|+||    .||-|+.+.     ||+-||+|++.+...     ..-..+|-.||.++.      .+.
T Consensus       182 vt~n~F~~~RvlGkGGFG----EV~acqvra-----TGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~------s~F  246 (591)
T KOG0986|consen  182 VTKNTFRVYRVLGKGGFG----EVCACQVRA-----TGKMYACKKLDKKRIKKRKGETMALNEKQILEKVS------SPF  246 (591)
T ss_pred             ccccceeeeEEEeccccc----ceeEEEEec-----chhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhc------cCc
Confidence            457889999999999999    999999998     899999999876432     234589999999994      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      ||.+--+|+     ..+.+|+||. .|+||||.-+|.+.+.       -.|+|.+                    +++|+
T Consensus       247 iVslaYAfe-----Tkd~LClVLt-lMNGGDLkfHiyn~g~-------~gF~e~r--------------------a~FYA  293 (591)
T KOG0986|consen  247 IVSLAYAFE-----TKDALCLVLT-LMNGGDLKFHIYNHGN-------PGFDEQR--------------------ARFYA  293 (591)
T ss_pred             EEEEeeeec-----CCCceEEEEE-eecCCceeEEeeccCC-------CCCchHH--------------------HHHHH
Confidence            999999998     7899999999 9999999988877652       2566654                    68899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC--------CCCCCcccccCCCCCCchhhHHH
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG--------PNNSSPDSNMDRRQMMIAFDMRC  309 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~--------~~Y~APE~l~~~~~ys~ksDIWS  309 (667)
                      .+|+.||++||..+||.|||||+|||+|+ .|+++|+|+|+|..+..+.        ..|||||++.+.. |+..+|+||
T Consensus       294 AEi~cGLehlH~~~iVYRDLKPeNILLDd-~GhvRISDLGLAvei~~g~~~~~rvGT~GYMAPEvl~ne~-Y~~s~Dwf~  371 (591)
T KOG0986|consen  294 AEIICGLEHLHRRRIVYRDLKPENILLDD-HGHVRISDLGLAVEIPEGKPIRGRVGTVGYMAPEVLQNEV-YDFSPDWFS  371 (591)
T ss_pred             HHHHhhHHHHHhcceeeccCChhheeecc-CCCeEeeccceEEecCCCCccccccCcccccCHHHHcCCc-ccCCccHHH
Confidence            99999999999999999999999999999 9999999999999887654        6799999766665 999999999


Q ss_pred             HHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          310 VGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       310 LGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      |||+||||+.|+.||.......+           ..+.-+.++..       .....+..|+++++|.+.+|+.||++|.
T Consensus       372 lGCllYemi~G~sPFr~~KeKvk-----------~eEvdrr~~~~-------~~ey~~kFS~eakslc~~LL~Kdp~~RL  433 (591)
T KOG0986|consen  372 LGCLLYEMIAGHSPFRQRKEKVK-----------REEVDRRTLED-------PEEYSDKFSEEAKSLCEGLLTKDPEKRL  433 (591)
T ss_pred             HHhHHHHHHcccCchhhhhhhhh-----------HHHHHHHHhcc-------hhhcccccCHHHHHHHHHHHccCHHHhc
Confidence            99999999999999964332221           11222222221       1223467899999999999999999998


Q ss_pred             C-----HHHHHcCCCCCCCCCCCC
Q 005958          390 S-----CLDALRHPFLCGPRWRVD  408 (667)
Q Consensus       390 S-----a~elL~HPwf~~~~~~~~  408 (667)
                      .     ++++.+||||++++|+..
T Consensus       434 Gcrg~ga~evk~HpfFk~lnw~rl  457 (591)
T KOG0986|consen  434 GCRGEGAQEVKEHPFFKDLNWRRL  457 (591)
T ss_pred             cCCCcCcchhhhCcccccCCHhHH
Confidence            4     679999999999998654

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.5e-38  Score=333.82  Aligned_cols=255  Identities=20%  Similarity=0.265  Sum_probs=204.8

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ++|++.+.||+|+||    .||+|.+..     +++.||+|.+....     ..+.+.+|+++++.+.      ||||++
T Consensus         1 ~~y~~~~~ig~g~~g----~vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~------~~~i~~   65 (316)
T cd05574           1 KHFKKIKLLGKGDVG----RVFLVRLKG-----TGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLD------HPFLPT   65 (316)
T ss_pred             CceEEeeeecCCccE----EEEEEEEcC-----CCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCC------CCCchh
Confidence            479999999999999    999999987     78999999997532     2345688999999994      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++.+.     .....|+||| |+.+++|.+++....       ...+++                    ..++.++.||
T Consensus        66 ~~~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~~-------~~~l~~--------------------~~~~~~~~qi  112 (316)
T cd05574          66 LYASFQ-----TETYLCLVMD-YCPGGELFRLLQRQP-------GKCLSE--------------------EVARFYAAEV  112 (316)
T ss_pred             heeeee-----cCCEEEEEEE-ecCCCCHHHHHHhCC-------CCccCH--------------------HHHHHHHHHH
Confidence            999998     7789999999 999999999987532       113444                    4567899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC------------------------------------
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE------------------------------------  284 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~------------------------------------  284 (667)
                      +.||+|||+.||+|+||||+||+++. ++.++|+|||++.....                                    
T Consensus       113 ~~~l~~lH~~~i~H~dlkp~Nili~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (316)
T cd05574         113 LLALEYLHLLGIVYRDLKPENILLHE-SGHIMLSDFDLSKQSDVEPPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNS  191 (316)
T ss_pred             HHHHHHHHHCCeeccCCChHHeEEcC-CCCEEEeecchhhcccccccccccccccccccccccccchhhhcccccCCCCC
Confidence            99999999999999999999999998 89999999999865422                                    


Q ss_pred             --CCCCCCCcccccCCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCC
Q 005958          285 --DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTG  362 (667)
Q Consensus       285 --~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~  362 (667)
                        +...|+|||.+. ...++.++|||||||++|+|++|..||.....           ...+.+    ......     .
T Consensus       192 ~~g~~~y~aPE~~~-~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~-----------~~~~~~----~~~~~~-----~  250 (316)
T cd05574         192 FVGTEEYIAPEVIS-GDGHGSAVDWWTLGILLYEMLYGTTPFKGSNR-----------DETFSN----ILKKEV-----T  250 (316)
T ss_pred             CcCccCCcCHHHHc-CCCCCchHHHHHHHHHHHHHhhCCCCCCCCch-----------HHHHHH----HhcCCc-----c
Confidence              124599999654 45589999999999999999999999852211           111111    111111     1


Q ss_pred             cccccCCCHHHHHHHHHhhhcCcCCCCC----HHHHHcCCCCCCCCCCCCCc
Q 005958          363 FQILDRNWGAGWNLLSLLLATKPSKRIS----CLDALRHPFLCGPRWRVDPS  410 (667)
Q Consensus       363 ~~~~~~~s~e~~dLI~~~L~~DP~kRpS----a~elL~HPwf~~~~~~~~~~  410 (667)
                      ++.....++++++||.+||+.||++|||    ++++|+||||++.+|.....
T Consensus       251 ~~~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~ll~~~~~~~~~~~~~~~  302 (316)
T cd05574         251 FPGSPPVSSSARDLIRKLLVKDPSKRLGSKRGAAEIKQHPFFRGVNWALIRH  302 (316)
T ss_pred             CCCccccCHHHHHHHHHHccCCHhHCCCchhhHHHHHcCchhhcCChhhccc
Confidence            1222236889999999999999999999    99999999999998865554

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=100.00  E-value=5.4e-38  Score=328.73  Aligned_cols=268  Identities=24%  Similarity=0.333  Sum_probs=204.5

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      +++|++.+.||+|++|    .||+|.+..     +++.||+|.+....    ..+.+.+|+++++.++      ||||++
T Consensus         1 ~~~y~~~~~l~~g~~~----~v~~~~~~~-----~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~   65 (294)
T PLN00009          1 MDQYEKVEKIGEGTYG----VVYKARDRV-----TNETIALKKIRLEQEDEGVPSTAIREISLLKEMQ------HGNIVR   65 (294)
T ss_pred             CCceEEEEEecCCCCE----EEEEEEecC-----CCcEEEEEehhhccccccchHHHHHHHHHHHhcc------CCCEee
Confidence            4789999999999999    999999987     78999999986532    2245678999999995      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     .....|+||| |+++ +|.+++.....       ..+++                    ..++.++.||
T Consensus        66 ~~~~~~-----~~~~~~lv~e-~~~~-~l~~~~~~~~~-------~~~~~--------------------~~~~~~~~qi  111 (294)
T PLN00009         66 LQDVVH-----SEKRLYLVFE-YLDL-DLKKHMDSSPD-------FAKNP--------------------RLIKTYLYQI  111 (294)
T ss_pred             EEEEEe-----cCCeEEEEEe-cccc-cHHHHHHhCCC-------CCcCH--------------------HHHHHHHHHH
Confidence            999998     7789999999 9976 89988865431       12232                    4577899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      +.||+|||++||+||||||+||+++..++.+||+|||++......         .+.|+|||.+.+...++.++||||+|
T Consensus       112 ~~aL~~LH~~~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG  191 (294)
T PLN00009        112 LRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVG  191 (294)
T ss_pred             HHHHHHHHhCCeeCCCCCcceEEEECCCCEEEEcccccccccCCCccccccCceeecccCHHHHhCCCCCCcHHHHHHHH
Confidence            999999999999999999999999864678999999999754321         25799999776666789999999999


Q ss_pred             HHHHHHHhCCCCChhh---hhhhhhhhccCCChhHHH-------HHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhh
Q 005958          312 FMMAKMVLRELMDPLI---FTKFKSFLTKGIDPSCLR-------EFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLL  381 (667)
Q Consensus       312 viLyemltG~~PF~~~---~~~~~~~~~~g~~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L  381 (667)
                      |++|+|++|++||...   ....+.+...+.+.....       .+. ........  .......+..+++++++|.+||
T Consensus       192 ~i~~~l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~l  268 (294)
T PLN00009        192 CIFAEMVNQKPLFPGDSEIDELFKIFRILGTPNEETWPGVTSLPDYK-SAFPKWPP--KDLATVVPTLEPAGVDLLSKML  268 (294)
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccccccchhhh-hhcccCCC--CCHHHhCcCCChHHHHHHHHHc
Confidence            9999999999999632   222222222222221111       000 00000000  0001123467889999999999


Q ss_pred             hcCcCCCCCHHHHHcCCCCCCCC
Q 005958          382 ATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       382 ~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      +.||++||++.++++||||.+.+
T Consensus       269 ~~~P~~Rps~~~~l~~~~~~~~~  291 (294)
T PLN00009        269 RLDPSKRITARAALEHEYFKDLG  291 (294)
T ss_pred             cCChhhCcCHHHHhcCchHhHHh
Confidence            99999999999999999998865

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=100.00  E-value=8.4e-38  Score=319.67  Aligned_cols=244  Identities=20%  Similarity=0.270  Sum_probs=195.4

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      +|++.+.||.|++|    .||++.+..     +++.||+|.+....    ..+...+|++++++++      |+||++++
T Consensus         1 ~y~~~~~lg~g~~~----~v~~~~~~~-----~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~------~~~i~~~~   65 (257)
T cd08223           1 AYCFVRVVGKGSYG----EVSLVRHRT-----DGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLK------HPNIVAYR   65 (257)
T ss_pred             CceEEEEecCCCCe----EEEEEEEcC-----CCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCC------CCCeeeee
Confidence            59999999999999    999999987     78999999986532    2345688999999994      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +.+.    ...+.+|++|| |+++++|.+++....       ...+++                    ..++.++.|++.
T Consensus        66 ~~~~----~~~~~~~lv~e-~~~~~~l~~~l~~~~-------~~~l~~--------------------~~~~~~~~~l~~  113 (257)
T cd08223          66 ESWE----GEDGLLYIVMG-FCEGGDLYHKLKEQK-------GKLLPE--------------------NQVVEWFVQIAM  113 (257)
T ss_pred             eeec----CCCCEEEEEec-ccCCCcHHHHHHHhc-------CCCCCH--------------------HHHHHHHHHHHH
Confidence            9876    13457899999 999999999997632       012343                    567889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      ||.|||++||+|+||||+||+++. ++.++|+|||++.....         +.+.|+|||.+ ....++.++||||+||+
T Consensus       114 ~l~~lH~~~i~H~di~p~nil~~~-~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Dv~slG~i  191 (257)
T cd08223         114 ALQYLHEKHILHRDLKTQNVFLTR-TNIIKVGDLGIARVLENQCDMASTLIGTPYYMSPELF-SNKPYNYKSDVWALGCC  191 (257)
T ss_pred             HHHHHHhCCeeccCCCchhEEEec-CCcEEEecccceEEecccCCccccccCCcCccChhHh-cCCCCCchhhhHHHHHH
Confidence            999999999999999999999998 89999999999976542         23679999955 44568899999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      +|+|++|+.||..            .+....   .........+      ......++++.+||.+||+.||++|||+.+
T Consensus       192 l~~l~~g~~~~~~------------~~~~~~---~~~~~~~~~~------~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~  250 (257)
T cd08223         192 VYEMATLKHAFNA------------KDMNSL---VYRIIEGKLP------PMPKDYSPELGELIATMLSKRPEKRPSVKS  250 (257)
T ss_pred             HHHHHcCCCCCCC------------CCHHHH---HHHHHhcCCC------CCccccCHHHHHHHHHHhccCcccCCCHHH
Confidence            9999999999852            121111   1111111111      123457789999999999999999999999


Q ss_pred             HHcCCCC
Q 005958          394 ALRHPFL  400 (667)
Q Consensus       394 lL~HPwf  400 (667)
                      +++||||
T Consensus       251 ~l~~~~~  257 (257)
T cd08223         251 ILRQPYI  257 (257)
T ss_pred             HhcCCCC
Confidence            9999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=100.00  E-value=4.1e-38  Score=328.38  Aligned_cols=247  Identities=16%  Similarity=0.177  Sum_probs=193.2

Q ss_pred             EeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEe
Q 005958           93 RVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSS  167 (667)
Q Consensus        93 ~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~  167 (667)
                      .||+|+||    .||+|.+..     +++.||+|.+.+..     ......+|..+++.+.   ..+||||+.+++++. 
T Consensus         1 ~lg~G~~g----~Vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~-   67 (279)
T cd05633           1 IIGRGGFG----EVYGCRKAD-----TGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVS---TGDCPFIVCMTYAFH-   67 (279)
T ss_pred             CcccCCCe----EEEEEEECC-----CCcEEEEEEEEccccccchHHHHHHHHHHHHHHHh---hCCCCcEeEEEEEEe-
Confidence            48999999    999999987     78999999986532     1222345555554442   125999999999998 


Q ss_pred             cccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHH
Q 005958          168 HTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYL  247 (667)
Q Consensus       168 ~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yL  247 (667)
                          ..+..++||| |+++|+|.+++..++         .+++                    ..+..++.|++.||.||
T Consensus        68 ----~~~~~~lv~e-~~~~~~L~~~i~~~~---------~l~~--------------------~~~~~i~~qi~~al~~l  113 (279)
T cd05633          68 ----TPDKLCFILD-LMNGGDLHYHLSQHG---------VFSE--------------------KEMRFYATEIILGLEHM  113 (279)
T ss_pred             ----cCCeEEEEEe-cCCCCCHHHHHHhcC---------CCCH--------------------HHHHHHHHHHHHHHHHH
Confidence                7789999999 999999999998654         4554                    45778999999999999


Q ss_pred             HHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-------CCCCCCCcccccCCCCCCchhhHHHHHHHHHHHHhC
Q 005958          248 HSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLR  320 (667)
Q Consensus       248 Hs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG  320 (667)
                      |++||+||||||+|||++. ++.++|+|||++.....       +...|+|||.+.....++.++||||+||++|+|++|
T Consensus       114 H~~~ivH~dikp~Nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g  192 (279)
T cd05633         114 HNRFVVYRDLKPANILLDE-HGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRG  192 (279)
T ss_pred             HHCCcCCCCCCHHHEEECC-CCCEEEccCCcceeccccCccCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhC
Confidence            9999999999999999998 89999999999865432       346899999766556689999999999999999999


Q ss_pred             CCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC-----CHHHHH
Q 005958          321 ELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI-----SCLDAL  395 (667)
Q Consensus       321 ~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp-----Sa~elL  395 (667)
                      ..||.....         .....+...    ...      ......+.+++++++||.+||..||++|+     ++++++
T Consensus       193 ~~pf~~~~~---------~~~~~~~~~----~~~------~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~  253 (279)
T cd05633         193 HSPFRQHKT---------KDKHEIDRM----TLT------VNVELPDSFSPELKSLLEGLLQRDVSKRLGCLGRGAQEVK  253 (279)
T ss_pred             CCCcCCCCC---------cCHHHHHHH----hhc------CCcCCccccCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHH
Confidence            999853211         111111111    110      01223456788999999999999999999     699999


Q ss_pred             cCCCCCCCCCC
Q 005958          396 RHPFLCGPRWR  406 (667)
Q Consensus       396 ~HPwf~~~~~~  406 (667)
                      +||||++..|.
T Consensus       254 ~h~~~~~~~~~  264 (279)
T cd05633         254 EHVFFKGIDWQ  264 (279)
T ss_pred             hCccccCCCHh
Confidence            99999997743

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.1e-38  Score=329.27  Aligned_cols=250  Identities=18%  Similarity=0.246  Sum_probs=202.2

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      ++|++.+.||.|+||    .||+|.+..     +++.||+|.+...  ...+.+.+|++++++++      ||||+++++
T Consensus         5 ~~~~i~~~l~~g~~~----~v~~~~~~~-----~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~~~~   69 (280)
T cd06611           5 DIWEIIGELGDGAFG----KVYKAQHKE-----TGLFAAAKIIQIESEEELEDFMVEIDILSECK------HPNIVGLYE   69 (280)
T ss_pred             hHHHHHHHhcCCCCc----eEEEEEEcC-----CCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCC------CCceeEEEE
Confidence            679999999999999    999999987     7899999998753  23345678999999994      999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++.     .....|+||| |+++|+|.+++...+        ..+++                    ..++.++.|++.|
T Consensus        70 ~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~~--------~~l~~--------------------~~~~~~~~ql~~~  115 (280)
T cd06611          70 AYF-----YENKLWILIE-FCDGGALDSIMLELE--------RGLTE--------------------PQIRYVCRQMLEA  115 (280)
T ss_pred             EEe-----cCCeEEEEee-ccCCCcHHHHHHHhc--------CCCCH--------------------HHHHHHHHHHHHH
Confidence            998     7789999999 999999999987643        13454                    4577899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCccccc----CCCCCCchhhHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNM----DRRQMMIAFDMRCV  310 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~----~~~~ys~ksDIWSL  310 (667)
                      |.|||++||+|+||||+||+++. ++.++|+|||++.....         +.+.|+|||.+.    ....++.++|||||
T Consensus       116 l~~lh~~~i~h~dl~p~nili~~-~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~sl  194 (280)
T cd06611         116 LNFLHSHKVIHRDLKAGNILLTL-DGDVKLADFGVSAKNKSTLQKRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSL  194 (280)
T ss_pred             HHHHHHCCcccCCCChhhEEECC-CCCEEEccCccchhhcccccccceeecchhhcCHHHHhhcccCCCCCCccccHHHH
Confidence            99999999999999999999998 89999999998865432         236799999764    23457889999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      ||++|+|++|++||....            ...   .+........    ..+.....++.++.+||.+||+.||++||+
T Consensus       195 G~il~~l~~g~~p~~~~~------------~~~---~~~~~~~~~~----~~~~~~~~~~~~~~~li~~~l~~~p~~Rps  255 (280)
T cd06611         195 GITLIELAQMEPPHHELN------------PMR---VLLKILKSEP----PTLDQPSKWSSSFNDFLKSCLVKDPDDRPT  255 (280)
T ss_pred             HHHHHHHHhCCCCcccCC------------HHH---HHHHHhcCCC----CCcCCcccCCHHHHHHHHHHhccChhhCcC
Confidence            999999999999985321            111   1111111111    112233457789999999999999999999


Q ss_pred             HHHHHcCCCCCCCC
Q 005958          391 CLDALRHPFLCGPR  404 (667)
Q Consensus       391 a~elL~HPwf~~~~  404 (667)
                      +.++|+||||....
T Consensus       256 ~~~il~~~~~~~~~  269 (280)
T cd06611         256 AAELLKHPFVSDQS  269 (280)
T ss_pred             HHHHhcChhhcccc
Confidence            99999999998764

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=100.00  E-value=1.4e-38  Score=327.88  Aligned_cols=248  Identities=19%  Similarity=0.248  Sum_probs=197.7

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ..++|++.+.||+|+||    .||+|++..     +++.||+|.++...  ....+.+|+.+++.++      ||||+++
T Consensus         7 ~~~~~~~~~~lg~g~~~----~v~~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~------h~~ii~~   71 (267)
T cd06645           7 PQEDFELIQRIGSGTYG----DVYKARNVN-----TGELAAIKVIKLEPGEDFAVVQQEIIMMKDCK------HSNIVAY   71 (267)
T ss_pred             cHHHHHHHHHhCCCCCe----EEEEEEEcC-----CCcEEEEEEEecCchhHHHHHHHHHHHHHhCC------CCCeeeE
Confidence            44689999999999999    999999987     78999999987532  2234678999999994      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     ..+..|+||| |+++++|.+++...+         .+++                    ..++.++.|++
T Consensus        72 ~~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~~---------~~~~--------------------~~~~~~~~~i~  116 (267)
T cd06645          72 FGSYL-----RRDKLWICME-FCGGGSLQDIYHVTG---------PLSE--------------------SQIAYVSRETL  116 (267)
T ss_pred             EEEEE-----eCCEEEEEEe-ccCCCcHHHHHHhcC---------CCCH--------------------HHHHHHHHHHH
Confidence            99998     7789999999 999999999997654         4554                    45788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCccccc--CCCCCCchhhHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNM--DRRQMMIAFDMRCV  310 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~--~~~~ys~ksDIWSL  310 (667)
                      .||.|||++||+|+||||+||+++. ++.+||+|||++.....         +...|+|||.+.  ....++.++|||||
T Consensus       117 ~~l~~lH~~~i~H~dlkp~nili~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSl  195 (267)
T cd06645         117 QGLYYLHSKGKMHRDIKGANILLTD-NGHVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAV  195 (267)
T ss_pred             HHHHHHHHCCeecCCCCHHHEEECC-CCCEEECcceeeeEccCcccccccccCcccccChhhhccccCCCCCchhhhHHH
Confidence            9999999999999999999999998 88999999999875432         236799999653  24458899999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      ||++|+|++|.+||.....           .......   ......+   ........++..+.+||.+||+.||++|||
T Consensus       196 G~il~~l~~~~~p~~~~~~-----------~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~li~~~l~~~P~~R~~  258 (267)
T cd06645         196 GITAIELAELQPPMFDLHP-----------MRALFLM---TKSNFQP---PKLKDKMKWSNSFHHFVKMALTKNPKKRPT  258 (267)
T ss_pred             HHHHHHHhcCCCCcccccc-----------hhhHHhh---hccCCCC---CcccccCCCCHHHHHHHHHHccCCchhCcC
Confidence            9999999999999852211           1111110   0000000   011112246788999999999999999999


Q ss_pred             HHHHHcCCC
Q 005958          391 CLDALRHPF  399 (667)
Q Consensus       391 a~elL~HPw  399 (667)
                      ++++++|||
T Consensus       259 ~~~ll~~~~  267 (267)
T cd06645         259 AEKLLQHPF  267 (267)
T ss_pred             HHHHhcCCC
Confidence            999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=100.00  E-value=4.2e-38  Score=327.66  Aligned_cols=250  Identities=15%  Similarity=0.222  Sum_probs=196.5

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ++|++.+.||+|+||    .||+|.+..     +++.||+|.+...   .....+.+|+++++++      +||||++++
T Consensus         1 ~~~~~~~~lg~g~~~----~v~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~   65 (279)
T cd06619           1 QDIQYQEILGHGNGG----TVYKAYHLL-----TRRILAVKVIPLDITVELQKQIMSELEILYKC------DSPYIIGFY   65 (279)
T ss_pred             CcchheeeeccCCCe----EEEEEEEcC-----CCcEEEEEEEecCCChHHHHHHHHHHHHHHhC------CCCCeeeEE
Confidence            468999999999999    999999987     7899999998653   2234578899999999      599999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     ..+..++||| |+++|+|..+.             .+++                    ..+..++.|++.
T Consensus        66 ~~~~-----~~~~~~lv~e-~~~~~~l~~~~-------------~~~~--------------------~~~~~~~~qi~~  106 (279)
T cd06619          66 GAFF-----VENRISICTE-FMDGGSLDVYR-------------KIPE--------------------HVLGRIAVAVVK  106 (279)
T ss_pred             EEEE-----ECCEEEEEEe-cCCCCChHHhh-------------cCCH--------------------HHHHHHHHHHHH
Confidence            9998     6788999999 99999986542             2333                    356789999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-------CCCCCCcccccCCCCCCchhhHHHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMA  315 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-------~~~Y~APE~l~~~~~ys~ksDIWSLGviLy  315 (667)
                      ||.|||++||+|+||||+|||++. ++.++|+|||++......       ...|+|||.+. ...++.++|||||||++|
T Consensus       107 ~l~~lH~~~i~H~dlkp~Nill~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~DvwslG~~l~  184 (279)
T cd06619         107 GLTYLWSLKILHRDVKPSNMLVNT-RGQVKLCDFGVSTQLVNSIAKTYVGTNAYMAPERIS-GEQYGIHSDVWSLGISFM  184 (279)
T ss_pred             HHHHHHHCCEeeCCCCHHHEEECC-CCCEEEeeCCcceecccccccCCCCChhhcCceeec-CCCCCCcchHHHHHHHHH
Confidence            999999999999999999999998 899999999999755432       36799999655 455899999999999999


Q ss_pred             HHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHH
Q 005958          316 KMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDAL  395 (667)
Q Consensus       316 emltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL  395 (667)
                      +|++|..||........     ...+.   +..........+     .......++++++||.+||+.||++||+++|++
T Consensus       185 ~l~~g~~pf~~~~~~~~-----~~~~~---~~~~~~~~~~~~-----~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~eil  251 (279)
T cd06619         185 ELALGRFPYPQIQKNQG-----SLMPL---QLLQCIVDEDPP-----VLPVGQFSEKFVHFITQCMRKQPKERPAPENLM  251 (279)
T ss_pred             HHHhCCCCchhhccccc-----ccchH---HHHHHHhccCCC-----CCCCCcCCHHHHHHHHHHhhCChhhCCCHHHHh
Confidence            99999999863211000     00011   111111111111     011234678999999999999999999999999


Q ss_pred             cCCCCCCCC
Q 005958          396 RHPFLCGPR  404 (667)
Q Consensus       396 ~HPwf~~~~  404 (667)
                      +||||....
T Consensus       252 ~~~~~~~~~  260 (279)
T cd06619         252 DHPFIVQYN  260 (279)
T ss_pred             cCccccccc
Confidence            999998764

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=100.00  E-value=4.7e-38  Score=330.46  Aligned_cols=271  Identities=21%  Similarity=0.241  Sum_probs=197.0

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      .+++|++.+.||+|+||    .||+|.+..     +++.||||.+....    ......+|++++++++      ||||+
T Consensus        10 ~~~~y~~~~~lg~g~~~----~v~~~~~~~-----~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~------h~~iv   74 (310)
T cd07865          10 EVSKYEKLAKIGQGTFG----EVFKARHKK-----TKQIVALKKVLMENEKEGFPITALREIKILQLLK------HENVV   74 (310)
T ss_pred             hhhheEEEEEeecCCCE----EEEEEEECC-----CCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCC------CCCcc
Confidence            45789999999999999    999999987     79999999986422    1234568999999995      99999


Q ss_pred             EEEEEEEeccc---CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          160 QVHGYVSSHTT---SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       160 ~l~~~~~~~~~---~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ++++++.....   ......++||| |+++ +|.+++....        ..+++                    ..++.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~lv~e-~~~~-~l~~~l~~~~--------~~~~~--------------------~~~~~i  124 (310)
T cd07865          75 NLIEICRTKATPYNRYKGSFYLVFE-FCEH-DLAGLLSNKN--------VKFTL--------------------SEIKKV  124 (310)
T ss_pred             ceEEEEecccccccCCCceEEEEEc-CCCc-CHHHHHHhcc--------cCCCH--------------------HHHHHH
Confidence            99999874321   13356799999 9987 9998887532        13443                    567889


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-------------CCCCCCcccccCCCCCCc
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-------------GPNNSSPDSNMDRRQMMI  303 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-------------~~~Y~APE~l~~~~~ys~  303 (667)
                      +.||+.||+|||++||+|+||||+||+++. ++.+||+|||++..+...             ...|+|||.+.+...++.
T Consensus       125 ~~qi~~al~~lH~~~i~H~dl~p~nil~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  203 (310)
T cd07865         125 MKMLLNGLYYIHRNKILHRDMKAANILITK-DGILKLADFGLARAFSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGP  203 (310)
T ss_pred             HHHHHHHHHHHHHCCeeccCCCHHHEEECC-CCcEEECcCCCcccccCCcccCCCCccCcccCccccCcHHhcCCcccCc
Confidence            999999999999999999999999999998 899999999999755322             145999997766666889


Q ss_pred             hhhHHHHHHHHHHHHhCCCCChhhhh---hhhhhhccCCChhHHHHHHH-----HHhccCCC-CCCCCccc-ccCCCHHH
Q 005958          304 AFDMRCVGFMMAKMVLRELMDPLIFT---KFKSFLTKGIDPSCLREFLL-----QVLNRNSS-SGNTGFQI-LDRNWGAG  373 (667)
Q Consensus       304 ksDIWSLGviLyemltG~~PF~~~~~---~~~~~~~~g~~~~~l~~~~~-----~~~~~~~~-~~~~~~~~-~~~~s~e~  373 (667)
                      ++||||+||++|||++|++||.....   ...+....|..+........     ........ ........ ....++.+
T Consensus       204 ~~Di~slG~~l~el~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  283 (310)
T cd07865         204 PIDMWGAGCIMAEMWTRSPIMQGNTEQHQLTLISQLCGSITPEVWPGVDKLELFKKMELPQGQKRKVKERLKPYVKDPHA  283 (310)
T ss_pred             hhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhcccccchhhhhhccCCCccchhhHHhcccccCCHHH
Confidence            99999999999999999999863211   00111111111111000000     00000000 00000000 11236788


Q ss_pred             HHHHHHhhhcCcCCCCCHHHHHcCCCC
Q 005958          374 WNLLSLLLATKPSKRISCLDALRHPFL  400 (667)
Q Consensus       374 ~dLI~~~L~~DP~kRpSa~elL~HPwf  400 (667)
                      ++||.+||..||++|||++++|+||||
T Consensus       284 ~dli~~~l~~~P~~R~t~~e~l~h~~f  310 (310)
T cd07865         284 LDLIDKLLVLDPAKRIDADTALNHDFF  310 (310)
T ss_pred             HHHHHHHhcCChhhccCHHHHhcCCCC
Confidence            999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>PHA03211 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=2.6e-38  Score=352.71  Aligned_cols=262  Identities=18%  Similarity=0.183  Sum_probs=194.7

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGY  164 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~  164 (667)
                      ...|.+.+.||+|+||    .||+|.+..     +++.||||....    ....+|+++|++|+      |+|||+++++
T Consensus       168 ~~gy~i~~~Lg~G~~G----~Vy~a~~~~-----~~~~vavK~~~~----~~~~~E~~iL~~L~------HpnIv~l~~~  228 (461)
T PHA03211        168 GLGFAIHRALTPGSEG----CVFESSHPD-----YPQRVVVKAGWY----ASSVHEARLLRRLS------HPAVLALLDV  228 (461)
T ss_pred             cCCeEEEEEEccCCCe----EEEEEEECC-----CCCEEEEecccc----cCHHHHHHHHHHCC------CCCCCcEEEE
Confidence            4579999999999999    999999998     789999997432    23568999999994      9999999999


Q ss_pred             EEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHH
Q 005958          165 VSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGV  244 (667)
Q Consensus       165 ~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL  244 (667)
                      +.     ..+..++||| ++.+ +|.+++....        ..+++                    ..++.|+.||+.||
T Consensus       229 ~~-----~~~~~~lv~e-~~~~-~L~~~l~~~~--------~~l~~--------------------~~~~~i~~qi~~aL  273 (461)
T PHA03211        229 RV-----VGGLTCLVLP-KYRS-DLYTYLGARL--------RPLGL--------------------AQVTAVARQLLSAI  273 (461)
T ss_pred             EE-----ECCEEEEEEE-ccCC-CHHHHHHhcC--------CCCCH--------------------HHHHHHHHHHHHHH
Confidence            98     7788999999 8865 9999987542        13443                    56788999999999


Q ss_pred             HHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-----------CCCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          245 NYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-----------DGPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       245 ~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-----------~~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      .|||++||+||||||+|||++. ++.+||+|||+++....           +...|+|||++.+ ..++.++|||||||+
T Consensus       274 ~yLH~~gIvHrDLKP~NILl~~-~~~vkL~DFGla~~~~~~~~~~~~~~~~GT~~Y~APE~~~~-~~~~~~sDvwSlGvi  351 (461)
T PHA03211        274 DYIHGEGIIHRDIKTENVLVNG-PEDICLGDFGAACFARGSWSTPFHYGIAGTVDTNAPEVLAG-DPYTPSVDIWSAGLV  351 (461)
T ss_pred             HHHHHCCEEECcCCHHHEEECC-CCCEEEcccCCceecccccccccccccCCCcCCcCHHHHcC-CCCCchHHHHHHHHH
Confidence            9999999999999999999998 88999999999975432           3468999996654 568999999999999


Q ss_pred             HHHHHhCCCCC-hhh---------hhhhhhhhccCCC--------hhHHHHHHHHHhc--cCCCCCCCCcccccCCCHHH
Q 005958          314 MAKMVLRELMD-PLI---------FTKFKSFLTKGID--------PSCLREFLLQVLN--RNSSSGNTGFQILDRNWGAG  373 (667)
Q Consensus       314 LyemltG~~PF-~~~---------~~~~~~~~~~g~~--------~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~s~e~  373 (667)
                      +|||++|..++ ...         .++.+++...+..        ...+...+.....  .........+......+.++
T Consensus       352 L~El~~g~~~lf~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (461)
T PHA03211        352 IFEAAVHTASLFSASRGDERRPYDAQILRIIRQAQVHVDEFPQHAGSRLVSQYRHRAARNRRPAYTRPAWTRYYKLDLDV  431 (461)
T ss_pred             HHHHHHcCCCcccCCcccccCCcHHHHHHHHHhhccccccCCCCcchHHHHHHHhhhhcccCCccCCcchhhhccccchH
Confidence            99999987543 210         1111111111100        0011111110000  00000111111222456789


Q ss_pred             HHHHHHhhhcCcCCCCCHHHHHcCCCCCC
Q 005958          374 WNLLSLLLATKPSKRISCLDALRHPFLCG  402 (667)
Q Consensus       374 ~dLI~~~L~~DP~kRpSa~elL~HPwf~~  402 (667)
                      .+||.+||++||.+|||+.|+|+||||+.
T Consensus       432 ~dli~~mL~~DP~~RPsa~elL~hp~f~~  460 (461)
T PHA03211        432 EYLVCRALTFDGARRPSAAELLRLPLFQS  460 (461)
T ss_pred             HHHHHHHcccChhhCcCHHHHhhCcccCC
Confidence            99999999999999999999999999975

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-39  Score=354.04  Aligned_cols=253  Identities=18%  Similarity=0.214  Sum_probs=207.3

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEecc
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHT  169 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~  169 (667)
                      -+||+|+||    +||-|++..     +...+|||-+....  ..+-+..||.+.+.|+      |.|||+++|.+.   
T Consensus       581 vVLGKGTYG----~VYA~RD~~-----tqvrIaIKEIpekdsr~~QPLhEEIaLH~~Lr------HkNIVrYLGs~s---  642 (1226)
T KOG4279|consen  581 VVLGKGTYG----TVYAARDMD-----TQVRIAIKEIPEKDSREVQPLHEEIALHSTLR------HKNIVRYLGSVS---  642 (1226)
T ss_pred             EEeecCcee----EEEeecccc-----ceeEEEeeecccccchhhccHHHHHHHHHHHh------hHhHHHHhhccC---
Confidence            468999999    999999998     88999999997532  2344688999999997      999999999987   


Q ss_pred             cCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHH
Q 005958          170 TSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHS  249 (667)
Q Consensus       170 ~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs  249 (667)
                        .++++-|.|| -.+||+|.++++..-        .++.+.                  ...+.+|.+||++||.|||+
T Consensus       643 --enGf~kIFME-qVPGGSLSsLLrskW--------GPlKDN------------------Estm~fYtkQILeGLkYLHe  693 (1226)
T KOG4279|consen  643 --ENGFFKIFME-QVPGGSLSSLLRSKW--------GPLKDN------------------ESTMNFYTKQILEGLKYLHE  693 (1226)
T ss_pred             --CCCeEEEEee-cCCCCcHHHHHHhcc--------CCCccc------------------hhHHHHHHHHHHHHhhhhhh
Confidence              8889999999 999999999998641        244221                  14688999999999999999


Q ss_pred             CCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC---------CCCCCccccc-CCCCCCchhhHHHHHHHHHHHHh
Q 005958          250 HGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG---------PNNSSPDSNM-DRRQMMIAFDMRCVGFMMAKMVL  319 (667)
Q Consensus       250 ~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~---------~~Y~APE~l~-~~~~ys~ksDIWSLGviLyemlt  319 (667)
                      +.|||||||-+|+||+.-.|.+||+|||.++++..-.         ..|||||++- +.+.|+.++|||||||++.||.|
T Consensus       694 n~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAginP~TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMAT  773 (1226)
T KOG4279|consen  694 NKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMAT  773 (1226)
T ss_pred             cceeeccccCCcEEEeeccceEEecccccchhhccCCccccccccchhhhChHhhccCCcCCCchhhhhhccceeEeecc
Confidence            9999999999999999878999999999998775433         5699999765 55689999999999999999999


Q ss_pred             CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCC
Q 005958          320 RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPF  399 (667)
Q Consensus       320 G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPw  399 (667)
                      |+|||.+.          |.+...+.+.   .+      .....+++..+|.+++.||.+|+.+||.+||+|.++|+.||
T Consensus       774 GrPPF~El----------gspqAAMFkV---Gm------yKvHP~iPeelsaeak~FilrcFepd~~~R~sA~~LL~DpF  834 (1226)
T KOG4279|consen  774 GRPPFVEL----------GSPQAAMFKV---GM------YKVHPPIPEELSAEAKNFILRCFEPDPCDRPSAKDLLQDPF  834 (1226)
T ss_pred             CCCCeeec----------CChhHhhhhh---cc------eecCCCCcHHHHHHHHHHHHHHcCCCcccCccHHHhccCcc
Confidence            99999743          3332222111   00      11123456678999999999999999999999999999999


Q ss_pred             CCCCCCCCCCc
Q 005958          400 LCGPRWRVDPS  410 (667)
Q Consensus       400 f~~~~~~~~~~  410 (667)
                      ++....+..+.
T Consensus       835 lq~~~kk~r~~  845 (1226)
T KOG4279|consen  835 LQHNNKKPRPK  845 (1226)
T ss_pred             cccCCCCCCCC
Confidence            99875444443

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.1e-38  Score=322.81  Aligned_cols=256  Identities=16%  Similarity=0.205  Sum_probs=200.5

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      .++|++.+.||.|+||    .||+|.+..     +++.||+|++.... ..+.+.+|+.+++++.     .|+||+++++
T Consensus         5 ~~~y~~~~~l~~g~~~----~v~~~~~~~-----~~~~~~~k~~~~~~~~~~~~~~e~~~l~~~~-----~h~~i~~~~~   70 (275)
T cd06608           5 TGIFELVEVIGEGTYG----KVYKARHKK-----TGQLVAIKIMDIIEDEEEEIKEEYNILRKYS-----NHPNIATFYG   70 (275)
T ss_pred             hhheeheeeecCCCCe----EEEEEEECC-----CCcEEEEEEEecCchhHHHHHHHHHHHHHhc-----CCCChheEEE
Confidence            4889999999999999    999999987     78999999987633 3456789999999996     5999999999


Q ss_pred             EEEeccc-CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          164 YVSSHTT-SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       164 ~~~~~~~-~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      ++..... .....+|+||| |+++++|.+++......     ...+++                    ..++.++.|++.
T Consensus        71 ~~~~~~~~~~~~~~~lv~e-~~~~~~L~~~~~~~~~~-----~~~~~~--------------------~~~~~~~~ql~~  124 (275)
T cd06608          71 AFIKKNPPGNDDQLWLVME-LCGGGSVTDLVKGLRKK-----GKRLKE--------------------EWIAYILRETLR  124 (275)
T ss_pred             EEEecCCCCcceEEEEEEE-cCCCCcHHHHHHHHhhc-----CCCCCH--------------------HHHHHHHHHHHH
Confidence            9974422 24567999999 99999999998753200     113443                    457889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccC----CCCCCchhhHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMD----RRQMMIAFDMRC  309 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~----~~~ys~ksDIWS  309 (667)
                      ||.|||++||+|+||+|+||+++. ++.+||+|||++......         ...|+|||.+..    ...++.++||||
T Consensus       125 al~~lH~~~i~H~~l~p~ni~~~~-~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~s  203 (275)
T cd06608         125 GLAYLHENKVIHRDIKGQNILLTK-NAEVKLVDFGVSAQLDSTLGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWS  203 (275)
T ss_pred             HHHHHhcCCcccCCCCHHHEEEcc-CCeEEECCCccceecccchhhhcCccccccccCHhHhcccccccCCccccccHHH
Confidence            999999999999999999999998 899999999998754322         256999996543    345788999999


Q ss_pred             HHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          310 VGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       310 LGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      |||++|+|++|.+||.....           ...+..    ......+    ........+.++++||.+||..||++||
T Consensus       204 lG~il~~l~~g~~p~~~~~~-----------~~~~~~----~~~~~~~----~~~~~~~~~~~~~~li~~~l~~dp~~Rp  264 (275)
T cd06608         204 LGITAIELADGKPPLCDMHP-----------MRALFK----IPRNPPP----TLKSPENWSKKFNDFISECLIKNYEQRP  264 (275)
T ss_pred             hHHHHHHHHhCCCCccccch-----------HHHHHH----hhccCCC----CCCchhhcCHHHHHHHHHHhhcChhhCc
Confidence            99999999999999852211           111111    1111111    1222234678999999999999999999


Q ss_pred             CHHHHHcCCCC
Q 005958          390 SCLDALRHPFL  400 (667)
Q Consensus       390 Sa~elL~HPwf  400 (667)
                      |+.|+++|||+
T Consensus       265 t~~~ll~~~~~  275 (275)
T cd06608         265 FMEELLEHPFI  275 (275)
T ss_pred             CHHHHhcCCCC
Confidence            99999999996

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=100.00  E-value=6.8e-38  Score=326.12  Aligned_cols=257  Identities=15%  Similarity=0.185  Sum_probs=200.0

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ..++|++.+.||+|+||    .||+|.+..     +++.||+|++.... ....+.+|+.+++.+.     +||||++++
T Consensus        16 ~~~~~~~~~~lg~g~~~----~vy~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~e~~~l~~l~-----~h~~i~~~~   81 (286)
T cd06638          16 PSDTWEIIETIGKGTYG----KVFKVLNKK-----NGSKAAVKILDPIHDIDEEIEAEYNILKALS-----DHPNVVKFY   81 (286)
T ss_pred             cccceeeeeeeccCCCc----EEEEEEECC-----CCceeEEEeeccccchHHHHHHHHHHHHHHh-----cCCCeeeee
Confidence            45899999999999999    999999987     78999999986532 3356788999999996     599999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.......++..++||| |+++|+|.+++.....     ....+++                    ..++.++.|++.
T Consensus        82 ~~~~~~~~~~~~~~~lv~e-~~~~~~L~~~l~~~~~-----~~~~~~~--------------------~~~~~~~~~i~~  135 (286)
T cd06638          82 GMYYKKDVKNGDQLWLVLE-LCNGGSVTDLVKGFLK-----RGERMEE--------------------PIIAYILHEALM  135 (286)
T ss_pred             eeeeecccCCCCeEEEEEe-ecCCCCHHHHHHHhhc-----cCccccH--------------------HHHHHHHHHHHH
Confidence            9885333235678999999 9999999998864210     0113343                    457889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccC----CCCCCchhhHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMD----RRQMMIAFDMRC  309 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~----~~~ys~ksDIWS  309 (667)
                      ||.|||+++|+||||||+||+++. ++.+||+|||++.....         +.+.|+|||.+..    ...++.++||||
T Consensus       136 ~l~~lH~~~i~H~dlkp~nili~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~s  214 (286)
T cd06638         136 GLQHLHVNKTIHRDVKGNNILLTT-EGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWS  214 (286)
T ss_pred             HHHHHHhCCccccCCCHHhEEECC-CCCEEEccCCceeecccCCCccccccCCCcccChhhhchhhhccccccchhhhhh
Confidence            999999999999999999999998 88899999999875432         2257999996642    345789999999


Q ss_pred             HHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          310 VGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       310 LGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      +||++|||++|++||.....           ...+..    .....    ..........+.++.+||.+||+.||++||
T Consensus       215 lGvi~~el~~g~~p~~~~~~-----------~~~~~~----~~~~~----~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp  275 (286)
T cd06638         215 LGITAIELGDGDPPLADLHP-----------MRALFK----IPRNP----PPTLHQPELWSNEFNDFIRKCLTKDYEKRP  275 (286)
T ss_pred             HHHHHHHHhcCCCCCCCCch-----------hHHHhh----ccccC----CCcccCCCCcCHHHHHHHHHHccCCcccCC
Confidence            99999999999999853211           111111    00000    001112234577899999999999999999


Q ss_pred             CHHHHHcCCCC
Q 005958          390 SCLDALRHPFL  400 (667)
Q Consensus       390 Sa~elL~HPwf  400 (667)
                      |+.|+++|+||
T Consensus       276 s~~ell~~~~~  286 (286)
T cd06638         276 TVSDLLQHVFI  286 (286)
T ss_pred             CHHHHhhcccC
Confidence            99999999997

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=100.00  E-value=4.7e-38  Score=326.51  Aligned_cols=253  Identities=15%  Similarity=0.190  Sum_probs=196.8

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ++|++.+.||+|+||    .||+|.+..     +++.||||.++...   .......|+.++.+..     +||||++++
T Consensus         1 ~~~~~~~~ig~g~~g----~v~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~-----~~~~iv~~~   66 (283)
T cd06617           1 DDLEVIEELGRGAYG----VVDKMRHVP-----TGTIMAVKRIRATVNSQEQKRLLMDLDISMRSV-----DCPYTVTFY   66 (283)
T ss_pred             CCceEEEEecccCCe----EEEEEEEcC-----CCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHc-----CCCCeeeee
Confidence            479999999999999    999999997     79999999987532   2344566777655543     699999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     ..+.+|+||| |+++ +|.+++......     ...++|                    ..++.++.||+.
T Consensus        67 ~~~~-----~~~~~~lv~e-~~~~-~l~~~l~~~~~~-----~~~~~~--------------------~~~~~~~~qi~~  114 (283)
T cd06617          67 GALF-----REGDVWICME-VMDT-SLDKFYKKVYDK-----GLTIPE--------------------DILGKIAVSIVK  114 (283)
T ss_pred             EEEe-----cCCcEEEEhh-hhcc-cHHHHHHHhccC-----CCCCCH--------------------HHHHHHHHHHHH
Confidence            9998     7788999999 9986 999988753210     113444                    567889999999


Q ss_pred             HHHHHHHC-CCcccCCCCCcEEEcCCCCeEEEeeecccccccC--------CCCCCCCcccccCC---CCCCchhhHHHH
Q 005958          243 GVNYLHSH-GLAHTELRLENVHISPVDRHIKVGILGNAADFYE--------DGPNNSSPDSNMDR---RQMMIAFDMRCV  310 (667)
Q Consensus       243 aL~yLHs~-gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~--------~~~~Y~APE~l~~~---~~ys~ksDIWSL  310 (667)
                      ||+|||++ +|+||||||+||+++. ++.+||+|||++.....        +...|+|||.+.+.   ..++.++|+|||
T Consensus       115 ~l~~lH~~~~i~h~dlkp~nil~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~sl  193 (283)
T cd06617         115 ALEYLHSKLSVIHRDVKPSNVLINR-NGQVKLCDFGISGYLVDSVAKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSL  193 (283)
T ss_pred             HHHHHhhcCCeecCCCCHHHEEECC-CCCEEEeecccccccccccccccccCCccccChhhcCCcccccccCccccchhh
Confidence            99999998 9999999999999998 89999999999875432        23569999966432   457889999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      ||++|+|++|+.||....          .....+...    .....+    .+ ....++.++.+||.+||..||++||+
T Consensus       194 G~~l~~l~~g~~p~~~~~----------~~~~~~~~~----~~~~~~----~~-~~~~~~~~l~~li~~~l~~~p~~Rp~  254 (283)
T cd06617         194 GITMIELATGRFPYDSWK----------TPFQQLKQV----VEEPSP----QL-PAEKFSPEFQDFVNKCLKKNYKERPN  254 (283)
T ss_pred             HHHHHHHHhCCCCCCccc----------cCHHHHHHH----HhcCCC----CC-CccccCHHHHHHHHHHccCChhhCcC
Confidence            999999999999985211          111111111    111111    00 11246789999999999999999999


Q ss_pred             HHHHHcCCCCCCCC
Q 005958          391 CLDALRHPFLCGPR  404 (667)
Q Consensus       391 a~elL~HPwf~~~~  404 (667)
                      +.++++||||....
T Consensus       255 ~~~il~~~~~~~~~  268 (283)
T cd06617         255 YPELLQHPFFELHL  268 (283)
T ss_pred             HHHHhcCchhhhcc
Confidence            99999999999866

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=100.00  E-value=3.1e-38  Score=330.39  Aligned_cols=267  Identities=24%  Similarity=0.315  Sum_probs=201.7

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh----HHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA----QRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~----~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      +++|++.+.||.|+||    .||+|.+..     +++.||+|.++....    .....+|+.++++++      ||||++
T Consensus         4 ~~~y~~~~~lg~g~~~----~v~~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~------h~ni~~   68 (293)
T cd07843           4 VDEYEKLNRIEEGTYG----VVYRARDKK-----TGEIVALKKLKMEKEKEGFPITSLREINILLKLQ------HPNIVT   68 (293)
T ss_pred             hhhhhhhhhhcCCCCe----EEEEEEECC-----CCcEEEEEEEeeccccccchhhHHHHHHHHHhcC------CCCEEE
Confidence            4689999999999999    999999987     789999999975322    224578999999995      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++...   +.+..|+||| |+++ +|.+++.....        .+++                    ..++.++.||
T Consensus        69 ~~~~~~~~---~~~~~~lv~e-~~~~-~L~~~~~~~~~--------~l~~--------------------~~~~~i~~qi  115 (293)
T cd07843          69 VKEVVVGS---NLDKIYMVME-YVEH-DLKSLMETMKQ--------PFLQ--------------------SEVKCLMLQL  115 (293)
T ss_pred             EEEEEEec---CCCcEEEEeh-hcCc-CHHHHHHhccC--------CCCH--------------------HHHHHHHHHH
Confidence            99998833   3489999999 9986 99999876431        3444                    4577899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      +.||+|||++||+|+||||+||+++. ++.+||+|||++......         .+.|+|||.+.+...++.++||||+|
T Consensus       116 ~~aL~~LH~~~i~H~dl~p~nili~~-~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG  194 (293)
T cd07843         116 LSGVAHLHDNWILHRDLKTSNLLLNN-RGILKICDFGLAREYGSPLKPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVG  194 (293)
T ss_pred             HHHHHHHHHCCeeeccCCHHHEEECC-CCcEEEeecCceeeccCCccccccccccccccCchhhcCCccccchhhHHHHH
Confidence            99999999999999999999999998 899999999999866543         25699999776666689999999999


Q ss_pred             HHHHHHHhCCCCChhhh---hhhhhhhccCCChhHHHHHHHHHhc---cCCCC--CCCCcccccC--CCHHHHHHHHHhh
Q 005958          312 FMMAKMVLRELMDPLIF---TKFKSFLTKGIDPSCLREFLLQVLN---RNSSS--GNTGFQILDR--NWGAGWNLLSLLL  381 (667)
Q Consensus       312 viLyemltG~~PF~~~~---~~~~~~~~~g~~~~~l~~~~~~~~~---~~~~~--~~~~~~~~~~--~s~e~~dLI~~~L  381 (667)
                      |++|+|++|.+||....   ...+++...+.+.............   .....  ........+.  .++.+.+||.+||
T Consensus       195 ~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  274 (293)
T cd07843         195 CIFAELLTKKPLFPGKSEIDQLNKIFKLLGTPTEKIWPGFSELPGAKKKTFTKYPYNQLRKKFPALSLSDNGFDLLNRLL  274 (293)
T ss_pred             HHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchHHHHHhhccchhcccccccccchhhhccccccCCChHHHHHHHHHh
Confidence            99999999999997321   1222222223222211111100000   00000  0000011222  4889999999999


Q ss_pred             hcCcCCCCCHHHHHcCCCC
Q 005958          382 ATKPSKRISCLDALRHPFL  400 (667)
Q Consensus       382 ~~DP~kRpSa~elL~HPwf  400 (667)
                      +.||++|||+.|+|+||||
T Consensus       275 ~~~p~~R~t~~ell~~~~f  293 (293)
T cd07843         275 TYDPAKRISAEDALKHPYF  293 (293)
T ss_pred             ccCccccCCHHHHhcCCCC
Confidence            9999999999999999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=100.00  E-value=1.1e-37  Score=325.84  Aligned_cols=265  Identities=17%  Similarity=0.205  Sum_probs=201.6

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      ...++|++.+.||+|+||    .||+|.++.......+..||+|.+....   ....+.+|+.+++.+      +||||+
T Consensus         3 ~~~~~~~i~~~lg~G~~g----~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~   72 (288)
T cd05061           3 VSREKITLLRELGQGSFG----MVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGF------TCHHVV   72 (288)
T ss_pred             ccHHHceeeeeecCCCCc----EEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhC------CCCCee
Confidence            455789999999999999    9999987642222246689999986432   223457899999998      499999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++.     ..+..|+||| |+++|+|.+++........  .                 ...........+..++.|
T Consensus        73 ~~~~~~~-----~~~~~~lv~e-~~~~g~L~~~l~~~~~~~~--~-----------------~~~~~~~~~~~~~~~~~~  127 (288)
T cd05061          73 RLLGVVS-----KGQPTLVVME-LMAHGDLKSYLRSLRPEAE--N-----------------NPGRPPPTLQEMIQMAAE  127 (288)
T ss_pred             eEEEEEc-----CCCCcEEEEe-CCCCCCHHHHHHHhccccc--c-----------------CCCCCCCCHHHHHHHHHH
Confidence            9999988     6678999999 9999999999986431000  0                 000112234567889999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhhHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      |+.||.|||++||+||||||+|||++. ++.+||+|||+++.....           ...|+|||.+. ...++.++|||
T Consensus       128 l~~~l~~lH~~~i~H~dikp~nili~~-~~~~~L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~-~~~~~~~~Dvw  205 (288)
T cd05061         128 IADGMAYLNAKKFVHRDLAARNCMVAH-DFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLK-DGVFTTSSDMW  205 (288)
T ss_pred             HHHHHHHHHhCCCcCCCCChheEEEcC-CCcEEECcCCccccccccccccccCCCcccccccCHHHhc-cCCCChHhHHH
Confidence            999999999999999999999999998 899999999998754221           14599999554 45689999999


Q ss_pred             HHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          309 CVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       309 SLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      ||||++|||++ |.+||..            .......+.+   .....      .......++++.+++.+||+.||++
T Consensus       206 slG~~l~el~~~~~~p~~~------------~~~~~~~~~~---~~~~~------~~~~~~~~~~~~~li~~~l~~~p~~  264 (288)
T cd05061         206 SFGVVLWEITSLAEQPYQG------------LSNEQVLKFV---MDGGY------LDQPDNCPERVTDLMRMCWQFNPKM  264 (288)
T ss_pred             HHHHHHHHHHhCCCCCCCC------------CCHHHHHHHH---HcCCC------CCCCCCCCHHHHHHHHHHcCCChhH
Confidence            99999999998 7888742            2222222221   11111      1122345789999999999999999


Q ss_pred             CCCHHHHHc------CCCCCCCCC
Q 005958          388 RISCLDALR------HPFLCGPRW  405 (667)
Q Consensus       388 RpSa~elL~------HPwf~~~~~  405 (667)
                      |||+.++++      ||||.+++|
T Consensus       265 Rps~~~ll~~l~~~~~~~~~~~~~  288 (288)
T cd05061         265 RPTFLEIVNLLKDDLHPSFPEVSF  288 (288)
T ss_pred             CcCHHHHHHHHHhhcCCCCCCCCC
Confidence            999999987      999999876

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=100.00  E-value=3.1e-38  Score=322.31  Aligned_cols=245  Identities=19%  Similarity=0.261  Sum_probs=200.9

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYV  165 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~  165 (667)
                      ++|++.+.||.|+||    .||+|.+..     +++.||+|.+......+.+.+|+++++++      +||||+++++++
T Consensus         3 ~~y~~~~~i~~g~~~----~v~~~~~~~-----~~~~~~~k~~~~~~~~~~~~~e~~~~~~l------~~~~i~~~~~~~   67 (256)
T cd06612           3 EVFDILEKLGEGSYG----SVYKAIHKE-----TGQVVAIKVVPVEEDLQEIIKEISILKQC------DSPYIVKYYGSY   67 (256)
T ss_pred             ccchhhhhhcCCCCe----EEEEEEEcC-----CCcEEEEEEeecHHHHHHHHHHHHHHHhC------CCCcEeeeeeee
Confidence            689999999999999    999999987     68999999998765567789999999999      499999999999


Q ss_pred             EecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHH
Q 005958          166 SSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVN  245 (667)
Q Consensus       166 ~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~  245 (667)
                      .     ....+|+++| |+++++|.+++...+        ..+++                    ..++.++.|++.||.
T Consensus        68 ~-----~~~~~~l~~e-~~~~~~L~~~l~~~~--------~~l~~--------------------~~~~~~~~~l~~~l~  113 (256)
T cd06612          68 F-----KNTDLWIVME-YCGAGSVSDIMKITN--------KTLTE--------------------EEIAAILYQTLKGLE  113 (256)
T ss_pred             e-----cCCcEEEEEe-cCCCCcHHHHHHhCc--------cCCCH--------------------HHHHHHHHHHHHHHH
Confidence            8     7789999999 999999999997532        13444                    457889999999999


Q ss_pred             HHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHHHHH
Q 005958          246 YLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAK  316 (667)
Q Consensus       246 yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGviLye  316 (667)
                      |||+.||+|+||+|+||+++. ++.+||+|||++......         ...|+|||.+ ....++.++||||+||++|+
T Consensus       114 ~lh~~~i~H~dl~~~ni~~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~-~~~~~~~~~Di~s~G~il~~  191 (256)
T cd06612         114 YLHSNKKIHRDIKAGNILLNE-EGQAKLADFGVSGQLTDTMAKRNTVIGTPFWMAPEVI-QEIGYNNKADIWSLGITAIE  191 (256)
T ss_pred             HHHHCCcccCCCCcceEEECC-CCcEEEcccccchhcccCccccccccCCccccCHHHH-hcCCCCchhhHHHHHHHHHH
Confidence            999999999999999999998 889999999998865432         2579999965 44568999999999999999


Q ss_pred             HHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHc
Q 005958          317 MVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALR  396 (667)
Q Consensus       317 mltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~  396 (667)
                      |++|++||.......            ..   ......    ..........++.++.+||.+||+.||++|||+.|+|+
T Consensus       192 l~~g~~p~~~~~~~~------------~~---~~~~~~----~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~il~  252 (256)
T cd06612         192 MAEGKPPYSDIHPMR------------AI---FMIPNK----PPPTLSDPEKWSPEFNDFVKKCLVKDPEERPSAIQLLQ  252 (256)
T ss_pred             HHhCCCCCCCcchhh------------hh---hhhccC----CCCCCCchhhcCHHHHHHHHHHHhcChhhCcCHHHHhc
Confidence            999999985321110            00   000000    01112223456789999999999999999999999999


Q ss_pred             CCCC
Q 005958          397 HPFL  400 (667)
Q Consensus       397 HPwf  400 (667)
                      ||||
T Consensus       253 ~~~~  256 (256)
T cd06612         253 HPFI  256 (256)
T ss_pred             CCCC
Confidence            9997

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=100.00  E-value=2.9e-38  Score=328.57  Aligned_cols=264  Identities=19%  Similarity=0.253  Sum_probs=200.6

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ++|++.+.||+|+||    .||+|.+..     +++.||+|.+....    ..+.+.+|+++++.++      ||||+++
T Consensus         1 ~~y~~~~~lg~g~~~----~vy~~~~~~-----~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~~   65 (286)
T cd07846           1 EKYENLGLVGEGSYG----MVMKCKHKE-----TGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLR------HENLVNL   65 (286)
T ss_pred             CceeEeeeeccCCCe----EEEEEEECC-----CCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcC------CcchhhH
Confidence            479999999999999    999999987     78999999976422    2345678999999994      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     ..+..|+||| |+++++|..++....         .+++                    ..++.++.||+
T Consensus        66 ~~~~~-----~~~~~~lv~e-~~~~~~l~~~~~~~~---------~~~~--------------------~~~~~~~~~i~  110 (286)
T cd07846          66 IEVFR-----RKKRLYLVFE-FVDHTVLDDLEKYPN---------GLDE--------------------SRVRKYLFQIL  110 (286)
T ss_pred             HHhcc-----cCCeEEEEEe-cCCccHHHHHHhccC---------CCCH--------------------HHHHHHHHHHH
Confidence            99998     7889999999 999988887765432         3443                    45788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      .||.|||+.||+|+||+|+||+++. ++.++|+|||++......         ...|+|||.+.+...++.++|||||||
T Consensus       111 ~~l~~LH~~~i~h~~l~p~ni~~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~  189 (286)
T cd07846         111 RGIEFCHSHNIIHRDIKPENILVSQ-SGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGC  189 (286)
T ss_pred             HHHHHHHHCCccccCCCHHHEEECC-CCcEEEEeeeeeeeccCCccccCcccceeeccCcHHhccccccCchHhHHHHHH
Confidence            9999999999999999999999998 899999999998765332         256899997766667889999999999


Q ss_pred             HHHHHHhCCCCChhhh---hhhhhhhccCCChhHHHHHHHH--Hh-ccCCCC---CCCCcccccCCCHHHHHHHHHhhhc
Q 005958          313 MMAKMVLRELMDPLIF---TKFKSFLTKGIDPSCLREFLLQ--VL-NRNSSS---GNTGFQILDRNWGAGWNLLSLLLAT  383 (667)
Q Consensus       313 iLyemltG~~PF~~~~---~~~~~~~~~g~~~~~l~~~~~~--~~-~~~~~~---~~~~~~~~~~~s~e~~dLI~~~L~~  383 (667)
                      ++|||++|++||+...   ....+....+.......+....  .. ....+.   ........+.++..+++|+.+||..
T Consensus       190 ~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  269 (286)
T cd07846         190 LVTEMLTGEPLFPGDSDIDQLYHIIKCLGNLIPRHQEIFQKNPLFAGMRLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRI  269 (286)
T ss_pred             HHHHHHcCCCCCCCCchHHHHHHHHHHhCCCchhhHHHhccchHhhccccccccCcchHHHhCCCcCHHHHHHHHHHhcC
Confidence            9999999999996321   1111111112111111111100  00 000000   0001112456788999999999999


Q ss_pred             CcCCCCCHHHHHcCCCC
Q 005958          384 KPSKRISCLDALRHPFL  400 (667)
Q Consensus       384 DP~kRpSa~elL~HPwf  400 (667)
                      ||++||++.++++||||
T Consensus       270 ~P~~Rp~~~~il~~~~~  286 (286)
T cd07846         270 DPDDRPSSSQLLHHEFF  286 (286)
T ss_pred             CcccchhHHHHhcCCCC
Confidence            99999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=100.00  E-value=7.1e-38  Score=330.34  Aligned_cols=272  Identities=20%  Similarity=0.291  Sum_probs=198.6

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-----hhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      +|++.+.||+|+||    .||+|.+...+   +++.||+|.+...     ...+...+|+.+++.++      ||||+++
T Consensus         1 ~y~~~~~ig~g~~g----~v~~~~~~~~~---~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~~   67 (316)
T cd07842           1 KYEIEGCIGRGTYG----RVYKAKRKNGK---DGKEYAIKKFKGDKEQYTGISQSACREIALLRELK------HENVVSL   67 (316)
T ss_pred             CceEEEEeccCCcE----EEEEEEecCCC---CCCeEEEEEeccccccccCccHHHHHHHHHHHhcC------CCCccce
Confidence            58999999999999    99999997521   4799999999862     23355688999999994      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++...   ....+++||| |+++ +|.+++.......    ...++                    ...++.++.||+
T Consensus        68 ~~~~~~~---~~~~~~lv~e-~~~~-~l~~~~~~~~~~~----~~~~~--------------------~~~~~~i~~qi~  118 (316)
T cd07842          68 VEVFLEH---ADKSVYLLFD-YAEH-DLWQIIKFHRQAK----RVSIP--------------------PSMVKSLLWQIL  118 (316)
T ss_pred             EEEEeCC---CCceEEEEEe-CCCc-CHHHHHHhhccCC----CcCcC--------------------HHHHHHHHHHHH
Confidence            9999832   3388999999 9987 8888886532110    01233                    356888999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcC---CCCeEEEeeecccccccCC------------CCCCCCcccccCCCCCCchhh
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISP---VDRHIKVGILGNAADFYED------------GPNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~---~~~~vKL~DFGlA~~~~~~------------~~~Y~APE~l~~~~~ys~ksD  306 (667)
                      .||+|||++||+||||||+||+++.   .++.+||+|||++......            ...|+|||++.+...++.++|
T Consensus       119 ~~l~~lH~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~D  198 (316)
T cd07842         119 NGVHYLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAID  198 (316)
T ss_pred             HHHHHHHhCCEeeCCCCHHHEEEcCCCCccceEEECCCccccccCCCcccccccCCccccccccCHHHHhCCCCCCcHHH
Confidence            9999999999999999999999985   3578999999998865322            246999998777777899999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhhhh------------hhhhhccCCChhHHHHHHHHH--------hccCCCCCCCC----
Q 005958          307 MRCVGFMMAKMVLRELMDPLIFTK------------FKSFLTKGIDPSCLREFLLQV--------LNRNSSSGNTG----  362 (667)
Q Consensus       307 IWSLGviLyemltG~~PF~~~~~~------------~~~~~~~g~~~~~l~~~~~~~--------~~~~~~~~~~~----  362 (667)
                      ||||||++|+|++|++||......            ...+...+.+...........        ...........    
T Consensus       199 v~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (316)
T cd07842         199 IWAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQLERIFEVLGTPTEKDWPDIKKMPEYDTLMKDFKTKTYPSNSLAKW  278 (316)
T ss_pred             HHHHHHHHHHHHhcCCCCcCCcccccccchhHHHHHHHHHHHhCCCchhHHHHHhhcccchhhhhhccCCCCCCccHHHH
Confidence            999999999999999999632211            111111121111111100000        00000000000    


Q ss_pred             cccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCC
Q 005958          363 FQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFL  400 (667)
Q Consensus       363 ~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf  400 (667)
                      .......+.++.++|.+||++||++|||+.|+++||||
T Consensus       279 ~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~eil~~~~f  316 (316)
T cd07842         279 MEKHKKPDSQGFDLLRKLLEYDPTKRITAEEALEHPYF  316 (316)
T ss_pred             HHhccCCCHHHHHHHHHHhcCCcccCcCHHHHhcCCCC
Confidence            00112567899999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=100.00  E-value=1.8e-38  Score=339.68  Aligned_cols=275  Identities=22%  Similarity=0.323  Sum_probs=210.8

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ++|++.+.||.|+||    .||+|.+..     +++.||+|++...    .......+|+.+|++++      ||||+++
T Consensus         5 ~~y~~~~~lg~g~~g----~v~~~~~~~-----~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~------h~~iv~~   69 (334)
T cd07855           5 SRYKPIENIGSGAYG----VVCSAIDTR-----SGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFK------HDNIIAI   69 (334)
T ss_pred             hceeeeeeeecCCCe----EEEEEEEcC-----CCCEEEEEEeccccccccchHHHHHHHHHHHhcC------CCCccCH
Confidence            789999999999999    999999998     7999999998753    22345678999999994      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.... .....+|+||| |+++ +|.+++....         .+++                    ..++.++.||+
T Consensus        70 ~~~~~~~~-~~~~~~~lv~e-~~~~-~l~~~~~~~~---------~~~~--------------------~~~~~i~~qi~  117 (334)
T cd07855          70 RDILRPPG-ADFKDVYVVMD-LMES-DLHHIIHSDQ---------PLTE--------------------EHIRYFLYQLL  117 (334)
T ss_pred             HHhccccC-CCCceEEEEEe-hhhh-hHHHHhccCC---------CCCH--------------------HHHHHHHHHHH
Confidence            99886332 24568999999 9975 9999987543         3444                    45788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-------------CCCCCCCcccccCCCCCCchhhHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-------------DGPNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-------------~~~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      .||.|||++||+||||||+||+++. ++.+||+|||++.....             +...|+|||.+.....++.++|||
T Consensus       118 ~aL~~LH~~~ivH~dlkp~Nil~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~  196 (334)
T cd07855         118 RGLKYIHSANVIHRDLKPSNLLVNE-DCELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMW  196 (334)
T ss_pred             HHHHHHHHCCeecCCCCHHHEEEcC-CCcEEecccccceeecccCcCCCcccccccccccccChHHhcCCcccccccchH
Confidence            9999999999999999999999998 89999999999875432             125699999766656789999999


Q ss_pred             HHHHHHHHHHhCCCCChhhh---hhhhhhhccCCChhHHHHHH-----HHHhccCCCCCCCCc-ccccCCCHHHHHHHHH
Q 005958          309 CVGFMMAKMVLRELMDPLIF---TKFKSFLTKGIDPSCLREFL-----LQVLNRNSSSGNTGF-QILDRNWGAGWNLLSL  379 (667)
Q Consensus       309 SLGviLyemltG~~PF~~~~---~~~~~~~~~g~~~~~l~~~~-----~~~~~~~~~~~~~~~-~~~~~~s~e~~dLI~~  379 (667)
                      |+||++|||++|++||....   +...+....|.++..+.+..     ............... ...+..++++++||.+
T Consensus       197 slG~~l~el~~g~~pf~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  276 (334)
T cd07855         197 SVGCIFAEMLGRRQLFPGKNYVHQLKLILSVLGSPSEEVLNRIGSDRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQ  276 (334)
T ss_pred             HHHHHHHHHHcCCCccCCCChHHHHHHHHHHhCCChhHhhhhhchhhHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHH
Confidence            99999999999999997422   22233334455544332211     111111111111111 1234578999999999


Q ss_pred             hhhcCcCCCCCHHHHHcCCCCCCCCCCCC
Q 005958          380 LLATKPSKRISCLDALRHPFLCGPRWRVD  408 (667)
Q Consensus       380 ~L~~DP~kRpSa~elL~HPwf~~~~~~~~  408 (667)
                      ||+.||++|||+++++.||||.+...+..
T Consensus       277 ~l~~~P~~Rpt~~~~l~~~~~~~~~~~~~  305 (334)
T cd07855         277 MLQFDPEERITVEQALQHPFLAQYHDPDD  305 (334)
T ss_pred             HccCChhhCcCHHHHHhChhhhhccCCcc
Confidence            99999999999999999999987664443

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=100.00  E-value=4.8e-38  Score=323.48  Aligned_cols=247  Identities=19%  Similarity=0.235  Sum_probs=197.3

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--------hHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--------AQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--------~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      +|+..+.||+|+||    .||+|.+..     +++.||+|++....        ..+.+.+|+.+++.++      |+||
T Consensus         1 ~~~~~~~lg~g~~~----~v~~~~~~~-----~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~------h~~i   65 (268)
T cd06630           1 EWLKGQQLGTGAFS----SCYQARDVK-----TGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLN------HPHI   65 (268)
T ss_pred             CccccceecCcCce----EEEEEEEcC-----CCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcC------CCce
Confidence            58889999999999    999999987     78999999987422        2356789999999995      9999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      +++++++.     +.+.+++||| |+.+++|.+++.+.+         .+++                    ..+..++.
T Consensus        66 v~~~~~~~-----~~~~~~~v~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~~~~~  110 (268)
T cd06630          66 IRMLGATC-----EDSHFNLFVE-WMAGGSVSHLLSKYG---------AFKE--------------------AVIINYTE  110 (268)
T ss_pred             ehhhceec-----cCCeEEEEEe-ccCCCcHHHHHHHhC---------CCCH--------------------HHHHHHHH
Confidence            99999998     7789999999 999999999998653         3444                    45778999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-------------CCCCCCcccccCCCCCCchh
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-------------GPNNSSPDSNMDRRQMMIAF  305 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-------------~~~Y~APE~l~~~~~ys~ks  305 (667)
                      ||+.||.|||++|++|+||||+||+++..+..+||+|||.+......             ...|+|||.+. ...++.++
T Consensus       111 ql~~al~~LH~~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~-~~~~~~~~  189 (268)
T cd06630         111 QLLRGLSYLHENQIIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLR-GEQYGRSC  189 (268)
T ss_pred             HHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEcccccccccccccccCCccccccccccceeCHhHhc-cCCCCccc
Confidence            99999999999999999999999999873457999999998765432             24699999654 45689999


Q ss_pred             hHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCc
Q 005958          306 DMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       306 DIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      ||||+||++|+|++|.+||....            .......+.......     .........++++.++|.+||..||
T Consensus       190 Dv~slG~~l~~l~~g~~p~~~~~------------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~l~~~p  252 (268)
T cd06630         190 DVWSVGCVIIEMATAKPPWNAEK------------HSNHLALIFKIASAT-----TAPSIPEHLSPGLRDVTLRCLELQP  252 (268)
T ss_pred             chHHHHHHHHHHHhCCCCCCCCC------------CcchHHHHHHHhccC-----CCCCCchhhCHHHHHHHHHHcCCCc
Confidence            99999999999999999985211            011111111111100     0112334567899999999999999


Q ss_pred             CCCCCHHHHHcCCCCC
Q 005958          386 SKRISCLDALRHPFLC  401 (667)
Q Consensus       386 ~kRpSa~elL~HPwf~  401 (667)
                      ++||++.++++||||+
T Consensus       253 ~~R~~~~~ll~~~~~~  268 (268)
T cd06630         253 EDRPPSRELLKHPVFR  268 (268)
T ss_pred             ccCcCHHHHhcCcccC
Confidence            9999999999999985

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=1.4e-37  Score=327.73  Aligned_cols=271  Identities=13%  Similarity=0.111  Sum_probs=195.3

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCC-----------CCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhh
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNS-----------PLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVR  149 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~-----------~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~  149 (667)
                      ..++|++.++||+|+||    .||+|.+.....           ..++..||+|++...   .....+.+|+.++.+++ 
T Consensus         3 ~~~~~~~~~~lg~G~fg----~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~-   77 (304)
T cd05096           3 PRGHLLFKEKLGEGQFG----EVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLK-   77 (304)
T ss_pred             chhhCeeeeEecccCCe----EEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcC-
Confidence            45789999999999999    999998754211           114557999998753   22345789999999995 


Q ss_pred             ccCCCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCcccc
Q 005958          150 RRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQ  229 (667)
Q Consensus       150 ~~~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~  229 (667)
                           ||||+++++++.     +.+..++||| |+.+|+|.+++...........       .   ............++
T Consensus        78 -----h~niv~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~~~~~~~~-------~---~~~~~~~~~~~~~~  136 (304)
T cd05096          78 -----DPNIIRLLGVCV-----DEDPLCMITE-YMENGDLNQFLSSHHLDDKEEN-------G---NDAVPPAHCLPAIS  136 (304)
T ss_pred             -----CCCeeEEEEEEe-----cCCceEEEEe-cCCCCcHHHHHHhccccccccc-------c---cccccccccccccc
Confidence                 999999999998     6778999999 9999999999976431110000       0   00000011122345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCC
Q 005958          230 LRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDR  298 (667)
Q Consensus       230 ~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~  298 (667)
                      ...+..++.||+.||.|||++||+||||||+|||++. ++.+||+|||+++.....           ...|+|||++. .
T Consensus       137 ~~~~~~i~~~i~~al~~lH~~~ivH~dlkp~Nill~~-~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~  214 (304)
T cd05096         137 YSSLLHVALQIASGMKYLSSLNFVHRDLATRNCLVGE-NLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECIL-M  214 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCccccCcchhheEEcC-CccEEECCCccceecccCceeEecCcCCCCccccCHHHHh-c
Confidence            5678899999999999999999999999999999998 899999999999765322           24699999654 4


Q ss_pred             CCCCchhhHHHHHHHHHHHHh--CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHH
Q 005958          299 RQMMIAFDMRCVGFMMAKMVL--RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNL  376 (667)
Q Consensus       299 ~~ys~ksDIWSLGviLyemlt--G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dL  376 (667)
                      ..++.++|||||||++|||++  +..||.+.            ......+...........  .......+.++..+.+|
T Consensus       215 ~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l  280 (304)
T cd05096         215 GKFTTASDVWAFGVTLWEILMLCKEQPYGEL------------TDEQVIENAGEFFRDQGR--QVYLFRPPPCPQGLYEL  280 (304)
T ss_pred             CCCCchhhhHHHHHHHHHHHHccCCCCCCcC------------CHHHHHHHHHHHhhhccc--cccccCCCCCCHHHHHH
Confidence            568999999999999999987  45666421            111211111111111000  00111234567899999


Q ss_pred             HHHhhhcCcCCCCCHHHHHc
Q 005958          377 LSLLLATKPSKRISCLDALR  396 (667)
Q Consensus       377 I~~~L~~DP~kRpSa~elL~  396 (667)
                      |.+||..||++|||+.++.+
T Consensus       281 i~~cl~~~p~~RPs~~~i~~  300 (304)
T cd05096         281 MLQCWSRDCRERPSFSDIHA  300 (304)
T ss_pred             HHHHccCCchhCcCHHHHHH
Confidence            99999999999999999853

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=100.00  E-value=9.6e-38  Score=324.31  Aligned_cols=265  Identities=23%  Similarity=0.327  Sum_probs=200.8

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      +|++.+.||.|++|    .||+|++..     +++.||||++....   ......+|++++++++      ||||+++++
T Consensus         1 ~y~~~~~l~~g~~~----~v~~~~~~~-----~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~------h~~i~~~~~   65 (284)
T cd07836           1 NFKQLEKLGEGTYA----TVYKGRNRT-----TGEIVALKEIHLDAEEGTPSTAIREISLMKELK------HENIVRLHD   65 (284)
T ss_pred             CceEeeeeccCCce----EEEEEEECC-----CCeEEEEEEecccccccchHHHHHHHHHHHhhc------CCCEeeeee
Confidence            58999999999999    999999987     78999999987532   2345678999999995      999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++.     ..+..++||| |+++ +|.+++.....      ...+++                    ..+..++.||+.|
T Consensus        66 ~~~-----~~~~~~lv~e-~~~~-~l~~~~~~~~~------~~~~~~--------------------~~~~~~~~qi~~~  112 (284)
T cd07836          66 VIH-----TENKLMLVFE-YMDK-DLKKYMDTHGV------RGALDP--------------------NTVKSFTYQLLKG  112 (284)
T ss_pred             eEe-----eCCcEEEEEe-cCCc-cHHHHHHhcCC------CCCcCH--------------------HHHHHHHHHHHHH
Confidence            998     7788999999 9986 99999876431      113444                    4577899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      |.|||++||+||||||+||+++. ++.++|+|||++......         ...|++||.+.+...++.++|||||||++
T Consensus       113 l~~lH~~~i~h~dl~p~ni~~~~-~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l  191 (284)
T cd07836         113 IAFCHENRVLHRDLKPQNLLINK-RGELKLADFGLARAFGIPVNTFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIM  191 (284)
T ss_pred             HHHHHHCCeeeCCCCHHHEEECC-CCcEEEeecchhhhhcCCccccccccccccccChHHhcCCCCCCcHHHHHHHHHHH
Confidence            99999999999999999999998 899999999999754321         25699999877767789999999999999


Q ss_pred             HHHHhCCCCChhhh---hhhhhhhccCCChhHHHHHHHHH--hccCCCC-CC-CCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          315 AKMVLRELMDPLIF---TKFKSFLTKGIDPSCLREFLLQV--LNRNSSS-GN-TGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       315 yemltG~~PF~~~~---~~~~~~~~~g~~~~~l~~~~~~~--~~~~~~~-~~-~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      |+|++|++||.+..   ...+++...+.+.....+.+...  +....+. .. ......+..+++++++|.+||+.||++
T Consensus       192 ~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~  271 (284)
T cd07836         192 AEMITGRPLFPGTNNEDQLLKIFRIMGTPTESTWPGISQLPEYKPTFPRYPPQDLQQLFPHADPLGIDLLHRLLQLNPEL  271 (284)
T ss_pred             HHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhHHHHhcCchhcccccCCChHHHHHHhhhcCcHHHHHHHHHhcCCccc
Confidence            99999999996321   11111112222221111111100  0000000 00 001122356789999999999999999


Q ss_pred             CCCHHHHHcCCCC
Q 005958          388 RISCLDALRHPFL  400 (667)
Q Consensus       388 RpSa~elL~HPwf  400 (667)
                      ||++.++++||||
T Consensus       272 R~~~~~~l~~~~f  284 (284)
T cd07836         272 RISAHDALQHPWF  284 (284)
T ss_pred             CCCHHHHhcCCCC
Confidence            9999999999998

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=4.7e-38  Score=323.72  Aligned_cols=241  Identities=19%  Similarity=0.263  Sum_probs=195.3

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----------hHHHHHHHHHHHHHHhhccCCCC
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----------AQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----------~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      +|.+...||.|+||    .||+|.+..     +++.||+|.+....           ..+.+.+|+.++++++      |
T Consensus         1 ~~~~~~~ig~g~~~----~v~~a~~~~-----~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~------h   65 (267)
T cd06628           1 KWIKGALIGSGSFG----SVYLGMNAS-----SGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQ------H   65 (267)
T ss_pred             CccccceeecCCCe----EEEEEEecC-----CCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcC------C
Confidence            47888999999999    999999987     78999999886421           1134678999999995      9


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      |||+++++++.     ..+..++||| |+++++|.+++...+         .+++                    ..++.
T Consensus        66 ~~i~~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~l~~--------------------~~~~~  110 (267)
T cd06628          66 ENIVQYLGSSL-----DADHLNIFLE-YVPGGSVAALLNNYG---------AFEE--------------------TLVRN  110 (267)
T ss_pred             CCeeeEEEEEE-----eCCccEEEEE-ecCCCCHHHHHHhcc---------CccH--------------------HHHHH
Confidence            99999999998     7789999999 999999999998754         3443                    45678


Q ss_pred             HHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------------CCCCCCCcccccCCCC
Q 005958          236 LMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------------DGPNNSSPDSNMDRRQ  300 (667)
Q Consensus       236 i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------------~~~~Y~APE~l~~~~~  300 (667)
                      ++.|++.||+|||++||+||||+|+||+++. ++.++|+|||.++....               +...|+|||.+. ...
T Consensus       111 ~~~~l~~~l~~lH~~~ivH~di~p~nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~-~~~  188 (267)
T cd06628         111 FVRQILKGLNYLHNRGIIHRDIKGANILVDN-KGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVVK-QTS  188 (267)
T ss_pred             HHHHHHHHHHHHHhcCcccccCCHHHEEEcC-CCCEEecccCCCcccccccccCCccccccccCCCcCccChhHhc-cCC
Confidence            9999999999999999999999999999998 89999999999876642               225699999554 456


Q ss_pred             CCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHh
Q 005958          301 MMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLL  380 (667)
Q Consensus       301 ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~  380 (667)
                      ++.++||||+||++|+|++|+.||......              ... .......      ........+.++.+||.+|
T Consensus       189 ~~~~~Dv~slG~il~~l~~g~~p~~~~~~~--------------~~~-~~~~~~~------~~~~~~~~~~~~~~li~~~  247 (267)
T cd06628         189 YTRKADIWSLGCLVVEMLTGKHPFPDCTQL--------------QAI-FKIGENA------SPEIPSNISSEAIDFLEKT  247 (267)
T ss_pred             CCchhhhHHHHHHHHHHhhCCCCCCCccHH--------------HHH-HHHhccC------CCcCCcccCHHHHHHHHHH
Confidence            889999999999999999999998632111              111 1111110      1112345678999999999


Q ss_pred             hhcCcCCCCCHHHHHcCCCC
Q 005958          381 LATKPSKRISCLDALRHPFL  400 (667)
Q Consensus       381 L~~DP~kRpSa~elL~HPwf  400 (667)
                      |+.||++||++.++++||||
T Consensus       248 l~~~p~~Rp~~~~il~~~~~  267 (267)
T cd06628         248 FEIDHNKRPTAAELLKHPFL  267 (267)
T ss_pred             ccCCchhCcCHHHHhhCCCC
Confidence            99999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=100.00  E-value=6.3e-38  Score=323.52  Aligned_cols=245  Identities=19%  Similarity=0.229  Sum_probs=194.0

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-------hhHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-------QAQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-------~~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      .+|++.+.||+|+||    .||+|.+..     ++..||+|++...       .....+.+|+.+++.++      ||||
T Consensus         2 ~~~~~~~~lg~g~~g----~vy~~~~~~-----~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~------h~~i   66 (266)
T cd06651           2 INWRRGKLLGQGAFG----RVYLCYDVD-----TGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQ------HERI   66 (266)
T ss_pred             CCccccceecCCCCE----EEEEEEEcC-----CCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcC------CCCe
Confidence            479999999999999    999999987     7899999998642       12245688999999995      9999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      +++++++...   ....++++|| |+++++|.+++...+         .+++                    ..++.++.
T Consensus        67 ~~~~~~~~~~---~~~~~~l~~e-~~~~~~L~~~l~~~~---------~l~~--------------------~~~~~~~~  113 (266)
T cd06651          67 VQYYGCLRDR---AEKTLTIFME-YMPGGSVKDQLKAYG---------ALTE--------------------SVTRKYTR  113 (266)
T ss_pred             eeEEEEEEcC---CCCEEEEEEe-CCCCCcHHHHHHHcC---------CCCH--------------------HHHHHHHH
Confidence            9999998732   3578899999 999999999998653         3443                    45677999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC------------CCCCCCCcccccCCCCCCchhh
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE------------DGPNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~------------~~~~Y~APE~l~~~~~ys~ksD  306 (667)
                      |++.||+|||++||+||||||+||+++. ++.+||+|||++.....            +...|+|||.+. ...++.++|
T Consensus       114 qi~~~l~~LH~~~i~H~~l~p~nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~D  191 (266)
T cd06651         114 QILEGMSYLHSNMIVHRDIKGANILRDS-AGNVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEVIS-GEGYGRKAD  191 (266)
T ss_pred             HHHHHHHHHHhCCeeeCCCCHHHEEECC-CCCEEEccCCCccccccccccCCccccCCccccccCHHHhC-CCCCCchhh
Confidence            9999999999999999999999999998 88999999999875432            224699999654 456899999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          307 MRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       307 IWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      |||+||++|||++|++||.......           ..    ........     ........++.+++|| +||..||+
T Consensus       192 v~slG~i~~el~~g~~pf~~~~~~~-----------~~----~~~~~~~~-----~~~~~~~~~~~~~~li-~~~~~~p~  250 (266)
T cd06651         192 VWSLGCTVVEMLTEKPPWAEYEAMA-----------AI----FKIATQPT-----NPQLPSHISEHARDFL-GCIFVEAR  250 (266)
T ss_pred             hHHHHHHHHHHHHCCCCccccchHH-----------HH----HHHhcCCC-----CCCCchhcCHHHHHHH-HHhcCChh
Confidence            9999999999999999986322111           11    11111000     1112334678899999 67778999


Q ss_pred             CCCCHHHHHcCCCCC
Q 005958          387 KRISCLDALRHPFLC  401 (667)
Q Consensus       387 kRpSa~elL~HPwf~  401 (667)
                      +||+++|+++||||+
T Consensus       251 ~Rp~~~eil~hp~~~  265 (266)
T cd06651         251 HRPSAEELLRHPFAQ  265 (266)
T ss_pred             hCcCHHHHhcCcccc
Confidence            999999999999996

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=100.00  E-value=1.8e-37  Score=327.25  Aligned_cols=249  Identities=17%  Similarity=0.266  Sum_probs=199.9

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ++|++.+.||+|+||    .||+|.+..     +++.||+|.+....     ....+.+|+++++.++      ||||++
T Consensus         1 ~~y~~~~~l~~g~~~----~v~~~~~~~-----~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~------~~~i~~   65 (305)
T cd05609           1 EDFETIKLISNGAYG----AVYLVRHKE-----TRQRFAMKKINKQNLILRNQIQQVFVERDILTFAE------NPFVVS   65 (305)
T ss_pred             CCceEeeEeecCCCe----eEEEEEECC-----CCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCC------CCCeee
Confidence            479999999999999    999999998     78999999987532     2235578999999984      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++.+.     .++.+++||| |+++|+|.+++...+         .+++                    ..+..++.|+
T Consensus        66 ~~~~~~-----~~~~~~lv~e-~~~g~~L~~~l~~~~---------~~~~--------------------~~~~~~~~~i  110 (305)
T cd05609          66 MFCSFE-----TKRHLCMVME-YVEGGDCATLLKNIG---------ALPV--------------------DMARMYFAET  110 (305)
T ss_pred             eEEEEe-----cCCEEEEEEe-cCCCCcHHHHHHHcC---------CCCH--------------------HHHHHHHHHH
Confidence            999998     7789999999 999999999997654         3444                    4567789999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeeccccccc------------------------CCCCCCCCccccc
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFY------------------------EDGPNNSSPDSNM  296 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~------------------------~~~~~Y~APE~l~  296 (667)
                      +.||.|||++||+||||||+||+++. ++.+||+|||+++...                        .....|+|||.+.
T Consensus       111 ~~~l~~lH~~~i~H~dl~p~NIll~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  189 (305)
T cd05609         111 VLALEYLHNYGIVHRDLKPDNLLITS-MGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVIL  189 (305)
T ss_pred             HHHHHHHHHCCccccCCchHHEEECC-CCCEEEeeCCCccccCcCccccccccccccchhhccccCCccCccccCchhcc
Confidence            99999999999999999999999998 8999999999886310                        1124699999654


Q ss_pred             CCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHH
Q 005958          297 DRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNL  376 (667)
Q Consensus       297 ~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dL  376 (667)
                      . ..++.++|||||||++|||++|..||.            +....++......   .....    .......++++.+|
T Consensus       190 ~-~~~~~~~Di~slG~vl~el~~g~~pf~------------~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~l  249 (305)
T cd05609         190 R-QGYGKPVDWWAMGIILYEFLVGCVPFF------------GDTPEELFGQVIS---DDIEW----PEGDEALPADAQDL  249 (305)
T ss_pred             C-CCCCchhhHHHHHHHHHHHHhCCCCCC------------CCCHHHHHHHHHh---cccCC----CCccccCCHHHHHH
Confidence            4 568999999999999999999999984            2233322222111   11000    01112467899999


Q ss_pred             HHHhhhcCcCCCCC---HHHHHcCCCCCCCCC
Q 005958          377 LSLLLATKPSKRIS---CLDALRHPFLCGPRW  405 (667)
Q Consensus       377 I~~~L~~DP~kRpS---a~elL~HPwf~~~~~  405 (667)
                      |.+||+.||++||+   +.++|+||||...+|
T Consensus       250 i~~~l~~~P~~R~~~~~~~~ll~~~~~~~~~~  281 (305)
T cd05609         250 ISRLLRQNPLERLGTGGAFEVKQHRFFLGLDW  281 (305)
T ss_pred             HHHHhccChhhccCccCHHHHHhCccccCCCH
Confidence            99999999999998   799999999988764

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=4.9e-38  Score=368.46  Aligned_cols=260  Identities=15%  Similarity=0.140  Sum_probs=203.9

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCC
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      ....+++|++++.||.|+||    +||+|.+..     ++..||+|++...    .....+.+|+.+|+.|+      ||
T Consensus         8 ge~~l~~YeIl~kLG~GgFG----tVYLAkdk~-----tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~------HP   72 (1021)
T PTZ00266          8 GESRLNEYEVIKKIGNGRFG----EVFLVKHKR-----TQEFFCWKAISYRGLKEREKSQLVIEVNVMRELK------HK   72 (1021)
T ss_pred             CccccCCEEEEEEEecCCCe----EEEEEEECC-----CCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcC------CC
Confidence            34567899999999999999    999999998     7899999998742    23355789999999995      99


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      |||+++++|...   ....+||||| |+++|+|.++|......     ...+++                    ..++.|
T Consensus        73 NIVrl~d~f~de---~~~~lyIVME-Y~~gGSL~~lL~k~~~~-----~g~L~E--------------------~~Il~I  123 (1021)
T PTZ00266         73 NIVRYIDRFLNK---ANQKLYILME-FCDAGDLSRNIQKCYKM-----FGKIEE--------------------HAIVDI  123 (1021)
T ss_pred             CcCeEEEEEEec---CCCEEEEEEe-CCCCCcHHHHHHHHhhc-----cCCCCH--------------------HHHHHH
Confidence            999999998743   5678999999 99999999999763200     013443                    568889


Q ss_pred             HHHHHHHHHHHHHC-------CCcccCCCCCcEEEcCC----------------CCeEEEeeecccccccC--------C
Q 005958          237 MRDLLIGVNYLHSH-------GLAHTELRLENVHISPV----------------DRHIKVGILGNAADFYE--------D  285 (667)
Q Consensus       237 ~~QIl~aL~yLHs~-------gIvHrDLKPeNILl~~~----------------~~~vKL~DFGlA~~~~~--------~  285 (667)
                      +.||+.||.|||+.       +||||||||+||||+..                .+.+||+|||++..+..        +
T Consensus       124 a~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~~s~~~s~vG  203 (1021)
T PTZ00266        124 TRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLSKNIGIESMAHSCVG  203 (1021)
T ss_pred             HHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccccccccccccCCCCceEEccCCccccccccccccccCC
Confidence            99999999999995       49999999999999641                23589999999976532        3


Q ss_pred             CCCCCCcccccC-CCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcc
Q 005958          286 GPNNSSPDSNMD-RRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQ  364 (667)
Q Consensus       286 ~~~Y~APE~l~~-~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~  364 (667)
                      .+.|+|||++.. ...++.++||||||||||||++|.+||...           .....+...+   ... +.      .
T Consensus       204 Tp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~-----------~~~~qli~~l---k~~-p~------l  262 (1021)
T PTZ00266        204 TPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKA-----------NNFSQLISEL---KRG-PD------L  262 (1021)
T ss_pred             CccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcC-----------CcHHHHHHHH---hcC-CC------C
Confidence            478999997654 346899999999999999999999999521           1111111111   111 10      1


Q ss_pred             cccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCCC
Q 005958          365 ILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPRW  405 (667)
Q Consensus       365 ~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~~  405 (667)
                      .....+.++.+||.+||..+|.+||++.|+|.||||.....
T Consensus       263 pi~~~S~eL~dLI~~~L~~dPeeRPSa~QlL~h~~ik~i~~  303 (1021)
T PTZ00266        263 PIKGKSKELNILIKNLLNLSAKERPSALQCLGYQIIKNVGP  303 (1021)
T ss_pred             CcCCCCHHHHHHHHHHhcCChhHCcCHHHHhccHHHhhcCC
Confidence            12346789999999999999999999999999999987653

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=100.00  E-value=4e-38  Score=343.13  Aligned_cols=281  Identities=15%  Similarity=0.146  Sum_probs=204.0

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCC
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      ..+.+..++|++.+.||+|+||    .||+|++...+...+++.||||+++...   ....+.+|+.+++.+.     +|
T Consensus        31 ~~~~~~~~~~~~~~~LG~G~fg----~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~-----~h  101 (374)
T cd05106          31 EKWEFPRDNLQFGKTLGAGAFG----KVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLG-----QH  101 (374)
T ss_pred             ccccccHHHceehheecCCCcc----cEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhc-----cC
Confidence            3456778899999999999999    9999998764444466789999997532   2345688999999995     59


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCc-cccc-ccCCCHHH----------H----------
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLP-TLEA-TLALDEES----------V----------  213 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~-~l~~-~~~l~E~~----------a----------  213 (667)
                      +||+++++++.     ..+.+++||| |+.+|+|.+++....... .... .....+..          .          
T Consensus       102 ~nIv~~~~~~~-----~~~~~~lv~e-y~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (374)
T cd05106         102 KNIVNLLGACT-----HGGPVLVITE-YCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSS  175 (374)
T ss_pred             CceeeEeeEec-----CCCCeEEeHh-hccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccc
Confidence            99999999998     7789999999 999999999997542100 0000 00000000          0          


Q ss_pred             -------------------hhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEe
Q 005958          214 -------------------RKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVG  274 (667)
Q Consensus       214 -------------------~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~  274 (667)
                                         .............+++...++.++.||+.||.|||++||+||||||+|||++. ++.+||+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~giiHrDLkp~Nil~~~-~~~~kL~  254 (374)
T cd05106         176 QGSDTYVEMRPVSSSSSQSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASKNCIHRDVAARNVLLTD-GRVAKIC  254 (374)
T ss_pred             cccccccccCCccccccccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHCCEEeccCchheEEEeC-CCeEEEe
Confidence                               00000000112234667889999999999999999999999999999999998 8999999


Q ss_pred             eecccccccCCC-----------CCCCCcccccCCCCCCchhhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChh
Q 005958          275 ILGNAADFYEDG-----------PNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPS  342 (667)
Q Consensus       275 DFGlA~~~~~~~-----------~~Y~APE~l~~~~~ys~ksDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~  342 (667)
                      |||+++......           ..|+|||++. ...|+.++|||||||++|||++ |++||+....           ..
T Consensus       255 DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~-----------~~  322 (374)
T cd05106         255 DFGLARDIMNDSNYVVKGNARLPVKWMAPESIF-DCVYTVQSDVWSYGILLWEIFSLGKSPYPGILV-----------NS  322 (374)
T ss_pred             eceeeeeccCCcceeeccCCCCccceeCHHHhc-CCCCCccccHHHHHHHHHHHHhCCCCCCccccc-----------cH
Confidence            999997643221           3599999654 4568999999999999999997 9999863211           11


Q ss_pred             HHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHc
Q 005958          343 CLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALR  396 (667)
Q Consensus       343 ~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~  396 (667)
                      ..........         ........+++++++|.+||+.||++|||+.++++
T Consensus       323 ~~~~~~~~~~---------~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~l~~  367 (374)
T cd05106         323 KFYKMVKRGY---------QMSRPDFAPPEIYSIMKMCWNLEPTERPTFSQISQ  367 (374)
T ss_pred             HHHHHHHccc---------CccCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            1111111110         11122345789999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=100.00  E-value=5.2e-38  Score=326.65  Aligned_cols=253  Identities=18%  Similarity=0.194  Sum_probs=199.1

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      .+.|++.+.||.|+||    .||+|.+..     +++.||+|++.... ....+.+|+.+++++.     +|+||+++++
T Consensus        15 ~~~~~~~~~lg~g~~~----~v~~~~~~~-----~~~~~a~K~~~~~~~~~~~~~~e~~~l~~~~-----~h~~i~~~~~   80 (282)
T cd06636          15 AGIFELVEVVGNGTYG----QVYKGRHVK-----TGQLAAIKVMDVTEDEEEEIKLEINMLKKYS-----HHRNIATYYG   80 (282)
T ss_pred             hhhhhhheeeccCCCe----EEEEEEEcC-----CCcEEEEEEEecChHHHHHHHHHHHHHHHhc-----CCCcEEEEee
Confidence            3789999999999999    999999987     78999999986542 3355788999999986     6999999999


Q ss_pred             EEEecc-cCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          164 YVSSHT-TSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       164 ~~~~~~-~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      ++.... ......+|++|| |+++|+|.+++....       ...+++                    ..++.++.||+.
T Consensus        81 ~~~~~~~~~~~~~~~iv~e-~~~~~~L~~~~~~~~-------~~~~~~--------------------~~~~~~~~qi~~  132 (282)
T cd06636          81 AFIKKSPPGHDDQLWLVME-FCGAGSVTDLVKNTK-------GNALKE--------------------DWIAYICREILR  132 (282)
T ss_pred             ehhcccccCCCCEEEEEEE-eCCCCcHHHHHHHcc-------CCCCCH--------------------HHHHHHHHHHHH
Confidence            986321 124578999999 999999999997632       113443                    457789999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccC----CCCCCchhhHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMD----RRQMMIAFDMRC  309 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~----~~~ys~ksDIWS  309 (667)
                      ||+|||++||+|+||||+||+++. ++.++|+|||++.....         +...|+|||.+..    ...++.++||||
T Consensus       133 al~~LH~~~ivH~dl~~~nili~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~Dvws  211 (282)
T cd06636         133 GLAHLHAHKVIHRDIKGQNVLLTE-NAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWS  211 (282)
T ss_pred             HHHHHHHCCcccCCCCHHHEEECC-CCCEEEeeCcchhhhhccccCCCcccccccccCHhhcCcccCcCcCCCcccchhH
Confidence            999999999999999999999998 88999999999875432         2356999997642    346888999999


Q ss_pred             HHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          310 VGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       310 LGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      |||++|||++|.+||.......           ....    .......     ......++.++.+||.+||..||.+||
T Consensus       212 lG~~l~el~~g~~p~~~~~~~~-----------~~~~----~~~~~~~-----~~~~~~~~~~~~~li~~cl~~~p~~Rp  271 (282)
T cd06636         212 LGITAIEMAEGAPPLCDMHPMR-----------ALFL----IPRNPPP-----KLKSKKWSKKFIDFIEGCLVKNYLSRP  271 (282)
T ss_pred             HHHHHHHHHhCCCCccccCHHh-----------hhhh----HhhCCCC-----CCcccccCHHHHHHHHHHhCCChhhCc
Confidence            9999999999999985321111           1111    1111000     011235678999999999999999999


Q ss_pred             CHHHHHcCCCC
Q 005958          390 SCLDALRHPFL  400 (667)
Q Consensus       390 Sa~elL~HPwf  400 (667)
                      ++.|+|+||||
T Consensus       272 ~~~ell~~~~~  282 (282)
T cd06636         272 STEQLLKHPFI  282 (282)
T ss_pred             CHHHHhcCCCC
Confidence            99999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=7e-38  Score=325.51  Aligned_cols=263  Identities=16%  Similarity=0.204  Sum_probs=201.0

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      +..++|++.+.||+|+||    .||+|.+...........||+|.+....   ....+.+|+.+++.++      ||||+
T Consensus         2 ~~~~~~~~~~~lg~G~~g----~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~------h~~i~   71 (283)
T cd05048           2 IPLSAVRFLEELGEGAFG----KVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQ------HPNIV   71 (283)
T ss_pred             CChHHcchhhcccCccCC----cEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcC------Ccccc
Confidence            456789999999999999    9999998764333455789999987532   2345688999999994      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++.     ..+..|++|| |+++|+|.+++............             .........++...+..++.|
T Consensus        72 ~~~~~~~-----~~~~~~~~~e-~~~~~~L~~~l~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~  132 (283)
T cd05048          72 CLLGVCT-----KEQPTCMLFE-YLAHGDLHEFLVRNSPHSDVGAE-------------SGDETVKSSLDCSDFLHIAIQ  132 (283)
T ss_pred             eEEEEEc-----CCCceEEEEe-cCCCCcHHHHHHhcCCCcccccc-------------cccccccCCCCHHHHHHHHHH
Confidence            9999998     6788999999 99999999999875321110000             000001123445678899999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhhHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      |+.||.|||++||+||||||+||+++. ++.+||+|||++......           .+.|+|||.+. ...++.++|||
T Consensus       133 l~~al~~lH~~~i~H~dlkp~Nil~~~-~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~sDv~  210 (283)
T cd05048         133 IAAGMEYLSSHHFVHRDLAARNCLVGE-GLTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAIL-YGKFTTESDIW  210 (283)
T ss_pred             HHHHHHHHHhCCeeccccccceEEEcC-CCcEEECCCcceeeccccccccccCCCcccccccCHHHhc-cCcCchhhhHH
Confidence            999999999999999999999999998 889999999998754322           14699999654 45689999999


Q ss_pred             HHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          309 CVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       309 SLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      ||||++|||++ |..||.            +....++...+.   ....      ......+++++.+|+.+||+.||++
T Consensus       211 slG~il~el~~~g~~p~~------------~~~~~~~~~~i~---~~~~------~~~~~~~~~~~~~l~~~c~~~~p~~  269 (283)
T cd05048         211 SFGVVLWEIFSYGLQPYY------------GFSNQEVIEMIR---SRQL------LPCPEDCPARVYALMIECWNEIPAR  269 (283)
T ss_pred             HHHHHHHHHHcCCCCCCC------------CCCHHHHHHHHH---cCCc------CCCcccCCHHHHHHHHHHccCChhh
Confidence            99999999998 998884            223333222221   1111      1223567899999999999999999


Q ss_pred             CCCHHHHHcC
Q 005958          388 RISCLDALRH  397 (667)
Q Consensus       388 RpSa~elL~H  397 (667)
                      ||++.|+++|
T Consensus       270 Rp~~~~i~~~  279 (283)
T cd05048         270 RPRFKDIHTR  279 (283)
T ss_pred             CcCHHHHHHH
Confidence            9999999875

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=4.7e-38  Score=327.59  Aligned_cols=253  Identities=15%  Similarity=0.250  Sum_probs=201.6

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ++|++++.||+|+||    .||+|.+..     +++.||+|.+...   .....+.+|+++++++.      ||||++++
T Consensus         1 ~~~~~~~~ig~g~~g----~v~~~~~~~-----~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~------~~~i~~~~   65 (286)
T cd06622           1 DEIEVLDELGKGNYG----SVYKVLHRP-----TGVTMAMKEIRLELDESKFNQIIMELDILHKAV------SPYIVDFY   65 (286)
T ss_pred             ChhhhhhhhcccCCe----EEEEEEEcC-----CCcEEEEEEeecccCHHHHHHHHHHHHHHHhcC------CCcHHhhh
Confidence            478999999999999    999999987     7899999988642   22346788999999994      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     ..+.+|+||| |+++++|.+++.....      ...+++                    ..++.++.||+.
T Consensus        66 ~~~~-----~~~~~~lv~e-~~~~~~l~~~~~~~~~------~~~~~~--------------------~~~~~~~~~i~~  113 (286)
T cd06622          66 GAFF-----IEGAVYMCME-YMDAGSLDKLYAGGVA------TEGIPE--------------------DVLRRITYAVVK  113 (286)
T ss_pred             hhee-----cCCeEEEEEe-ecCCCCHHHHHHhccc------cCCCCH--------------------HHHHHHHHHHHH
Confidence            9998     7789999999 9999999999876310      013443                    567889999999


Q ss_pred             HHHHHHH-CCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-------CCCCCCCcccccCC-----CCCCchhhHHH
Q 005958          243 GVNYLHS-HGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-------DGPNNSSPDSNMDR-----RQMMIAFDMRC  309 (667)
Q Consensus       243 aL~yLHs-~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-------~~~~Y~APE~l~~~-----~~ys~ksDIWS  309 (667)
                      ||.|||+ .||+||||||+||+++. ++.+||+|||++..+..       +.+.|+|||.+.+.     ..++.++||||
T Consensus       114 ~l~~LH~~~~i~H~dl~p~nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Diws  192 (286)
T cd06622         114 GLKFLKEEHNIIHRDVKPTNVLVNG-NGQVKLCDFGVSGNLVASLAKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWS  192 (286)
T ss_pred             HHHHHHhcCCEeeCCCCHHHEEECC-CCCEEEeecCCcccccCCccccCCCccCccCcchhcCCCCCccCCCCcccchHh
Confidence            9999997 59999999999999998 89999999999876532       22579999965433     23688999999


Q ss_pred             HHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          310 VGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       310 LGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      |||++|+|++|+.||...            ........+..+.....      ....+.+++++.+||.+||+.||++||
T Consensus       193 lG~il~~l~~g~~pf~~~------------~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~li~~~l~~~p~~Rp  254 (286)
T cd06622         193 LGLSILEMALGRYPYPPE------------TYANIFAQLSAIVDGDP------PTLPSGYSDDAQDFVAKCLNKIPNRRP  254 (286)
T ss_pred             HHHHHHHHHhCCCCCCCc------------chhhHHHHHHHHhhcCC------CCCCcccCHHHHHHHHHHcccCcccCC
Confidence            999999999999998521            11112222222222211      123345788999999999999999999


Q ss_pred             CHHHHHcCCCCCCCC
Q 005958          390 SCLDALRHPFLCGPR  404 (667)
Q Consensus       390 Sa~elL~HPwf~~~~  404 (667)
                      +++++++||||....
T Consensus       255 ~~~~l~~~~~~~~~~  269 (286)
T cd06622         255 TYAQLLEHPWLVKYK  269 (286)
T ss_pred             CHHHHhcChhhhhcc
Confidence            999999999998765

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=1.2e-37  Score=327.76  Aligned_cols=248  Identities=20%  Similarity=0.233  Sum_probs=200.0

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ..+|++.+.||+|+||    .||+|.+..     +++.||+|.+....  ..+.+.+|+.+++.+      .||||++++
T Consensus        19 ~~~y~~~~~lg~g~~~----~v~~~~~~~-----~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~------~h~~v~~~~   83 (296)
T cd06654          19 KKKYTRFEKIGQGASG----TVYTAMDVA-----TGQEVAIRQMNLQQQPKKELIINEILVMREN------KNPNIVNYL   83 (296)
T ss_pred             ccceeeEEEecCCCCe----EEEEEEECC-----CCcEEEEEEEecCCcchHHHHHHHHHHHHhC------CCCCEeeEE
Confidence            3689999999999999    999999887     78999999987532  335578899999998      499999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +.+.     .....|+||| |+.+|+|.+++...          .+++                    ..+..++.|++.
T Consensus        84 ~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~----------~~~~--------------------~~~~~i~~ql~~  127 (296)
T cd06654          84 DSYL-----VGDELWVVME-YLAGGSLTDVVTET----------CMDE--------------------GQIAAVCRECLQ  127 (296)
T ss_pred             EEEE-----eCCEEEEeec-ccCCCCHHHHHHhc----------CCCH--------------------HHHHHHHHHHHH
Confidence            9998     6789999999 99999999998753          2333                    456789999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      ||.|||++||+||||||+||+++. ++.+||+|||++.....         +.+.|+|||.+ ....++.++|||||||+
T Consensus       128 aL~~LH~~gi~H~dLkp~Nill~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Dv~s~Gvi  205 (296)
T cd06654         128 ALEFLHSNQVIHRDIKSDNILLGM-DGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVV-TRKAYGPKVDIWSLGIM  205 (296)
T ss_pred             HHHHHHHCCcccCCCCHHHEEEcC-CCCEEECccccchhccccccccCcccCCccccCHHHH-cCCCCCccchHHHHHHH
Confidence            999999999999999999999998 89999999999875432         23679999954 45567899999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      +|+|++|++||....            +..  .... ......    ...+....+++.+.+||.+||..||++|||+.+
T Consensus       206 l~~l~~g~~pf~~~~------------~~~--~~~~-~~~~~~----~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~e  266 (296)
T cd06654         206 AIEMIEGEPPYLNEN------------PLR--ALYL-IATNGT----PELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKE  266 (296)
T ss_pred             HHHHHhCCCCCCCCC------------HHH--hHHH-HhcCCC----CCCCCccccCHHHHHHHHHHCcCCcccCcCHHH
Confidence            999999999985221            111  0000 111100    111223456789999999999999999999999


Q ss_pred             HHcCCCCCCCC
Q 005958          394 ALRHPFLCGPR  404 (667)
Q Consensus       394 lL~HPwf~~~~  404 (667)
                      +++||||...+
T Consensus       267 il~~~~~~~~~  277 (296)
T cd06654         267 LLQHQFLKIAK  277 (296)
T ss_pred             HhhChhhhccC
Confidence            99999998754

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=100.00  E-value=1.7e-37  Score=316.85  Aligned_cols=243  Identities=20%  Similarity=0.270  Sum_probs=197.0

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      +|++.+.||+|+||    .||+|.+..     +++.||+|.+...    .....+.+|+++++.++      ||||++++
T Consensus         1 ~~~~~~~l~~g~~~----~v~~~~~~~-----~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~~~   65 (256)
T cd08529           1 DFEILNKIGKGSFG----VVFKVVRKA-----DKRVYAMKQIDLSKMNRREREEAIDEARVLAKLD------SSYIIRYY   65 (256)
T ss_pred             CceEeEEecCCCCe----EEEEEEEcC-----CCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcC------CCCeehhe
Confidence            58999999999999    999999987     7899999998642    33456688999999994      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     ..+..|+||| |+++++|.+++....       ...+++                    ..+..++.||+.
T Consensus        66 ~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~-------~~~~~~--------------------~~~~~i~~~l~~  112 (256)
T cd08529          66 ESFL-----DKGKLNIVME-YAENGDLHKLLKMQR-------GRPLPE--------------------DQVWRFFIQILL  112 (256)
T ss_pred             eeec-----cCCEEEEEEE-eCCCCcHHHHHHHhc-------CCCCCH--------------------HHHHHHHHHHHH
Confidence            9998     7789999999 999999999998642       013343                    457789999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      ||.|||++||+|+||||+||+++. ++.++|+|||++......         .+.|+|||++. ...++.++|||||||+
T Consensus       113 al~~lH~~~i~h~dl~~~nili~~-~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~slG~i  190 (256)
T cd08529         113 GLAHLHSKKILHRDIKSLNLFLDA-YDNVKIGDLGVAKLLSDNTNFANTIVGTPYYLSPELCE-DKPYNEKSDVWALGVV  190 (256)
T ss_pred             HHHHHHHCCcccCCCCcceEEEeC-CCCEEEcccccceeccCccchhhccccCccccCHHHhc-CCCCCCccchHHHHHH
Confidence            999999999999999999999998 899999999998765432         25699999554 4558999999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      +|+|++|+.||...            ......   ........+      .....++.++.++|.+||+.+|++||++.+
T Consensus       191 l~~l~~g~~p~~~~------------~~~~~~---~~~~~~~~~------~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~  249 (256)
T cd08529         191 LYECCTGKHPFDAN------------NQGALI---LKIIRGVFP------PVSQMYSQQLAQLIDQCLTKDYRQRPDTFQ  249 (256)
T ss_pred             HHHHHhCCCCCCCC------------CHHHHH---HHHHcCCCC------CCccccCHHHHHHHHHHccCCcccCcCHHH
Confidence            99999999998522            111111   111111111      112256789999999999999999999999


Q ss_pred             HHcCCCC
Q 005958          394 ALRHPFL  400 (667)
Q Consensus       394 lL~HPwf  400 (667)
                      +++|||+
T Consensus       250 ll~~~~~  256 (256)
T cd08529         250 LLRNPSL  256 (256)
T ss_pred             HhhCCCC
Confidence            9999996

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=100.00  E-value=8.4e-38  Score=337.16  Aligned_cols=268  Identities=21%  Similarity=0.269  Sum_probs=203.0

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      .++|++.+.||+|+||    .||+|.+..     +++.||||.+...    .....+.+|+.+++.++      ||||++
T Consensus        15 ~~~y~~~~~lg~g~~g----~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~------h~~iv~   79 (353)
T cd07850          15 LKRYQNLKPIGSGAQG----IVCAAYDTV-----TGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVN------HKNIIG   79 (353)
T ss_pred             hcceEEEEEeccCCCE----EEEEEEECC-----CCCEEEEEecCccccChhHHHHHHHHHHHHHhcC------CCCCcc
Confidence            5889999999999999    999999998     7999999998642    22345678999999994      999999


Q ss_pred             EEEEEEeccc-CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          161 VHGYVSSHTT-SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       161 l~~~~~~~~~-~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      +++++..... .+....|+||| |+++ +|.+++..           .+++                    ..++.++.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~lv~e-~~~~-~l~~~~~~-----------~l~~--------------------~~~~~~~~q  126 (353)
T cd07850          80 LLNVFTPQKSLEEFQDVYLVME-LMDA-NLCQVIQM-----------DLDH--------------------ERMSYLLYQ  126 (353)
T ss_pred             eeeeeccCCCccccCcEEEEEe-ccCC-CHHHHHhh-----------cCCH--------------------HHHHHHHHH
Confidence            9999873321 13346899999 9987 99998864           2443                    356789999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      |+.||+|||++||+||||||+||+++. ++.+||+|||++......        .+.|+|||.+. ...++.++||||||
T Consensus       127 l~~aL~~LH~~gi~H~dlkp~Nil~~~-~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~DvwslG  204 (353)
T cd07850         127 MLCGIKHLHSAGIIHRDLKPSNIVVKS-DCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVIL-GMGYKENVDIWSVG  204 (353)
T ss_pred             HHHHHHHHHhCCeeeCCCCHHHEEECC-CCCEEEccCccceeCCCCCCCCCCcccccccCHHHHh-CCCCCCchhhHhHH
Confidence            999999999999999999999999998 899999999999865432        25699999654 45689999999999


Q ss_pred             HHHHHHHhCCCCChhhh---hhhhhhhccCCChhHHHHHHHH----HhccCCCCCCCCc--------------ccccCCC
Q 005958          312 FMMAKMVLRELMDPLIF---TKFKSFLTKGIDPSCLREFLLQ----VLNRNSSSGNTGF--------------QILDRNW  370 (667)
Q Consensus       312 viLyemltG~~PF~~~~---~~~~~~~~~g~~~~~l~~~~~~----~~~~~~~~~~~~~--------------~~~~~~s  370 (667)
                      |++|+|++|+.||...+   ....+....|.++..+...+..    ............+              ......+
T Consensus       205 ~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (353)
T cd07850         205 CIMGEMIRGTVLFPGTDHIDQWNKIIEQLGTPSDEFMSRLQPTVRNYVENRPKYAGYSFEELFPDVLFPPDSESHNKLKA  284 (353)
T ss_pred             HHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhhhhHHhhcCCCCCCcchhhhCcccccCcccccccccch
Confidence            99999999999997432   2223333445554433332211    1111110000000              0012346


Q ss_pred             HHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCC
Q 005958          371 GAGWNLLSLLLATKPSKRISCLDALRHPFLCG  402 (667)
Q Consensus       371 ~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~  402 (667)
                      +++++||.+||+.||++|||+.|+|+||||+.
T Consensus       285 ~~~~~li~~~L~~dP~~R~t~~eiL~~~~~~~  316 (353)
T cd07850         285 SQARDLLSKMLVIDPEKRISVDDALQHPYINV  316 (353)
T ss_pred             hHHHHHHHHHcCCChhhCcCHHHHhcChhHhh
Confidence            68999999999999999999999999999974

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=100.00  E-value=1.4e-37  Score=319.04  Aligned_cols=251  Identities=20%  Similarity=0.276  Sum_probs=199.9

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ++|++.+.||.|+||    +||+|....     ++..+|+|++....   ....+.+|+++++.++      |+||++++
T Consensus         1 ~~y~~~~~lg~g~~~----~v~~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~------~~~i~~~~   65 (267)
T cd06610           1 DDYELIEVIGVGATA----VVYAAICLP-----NNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCN------HPNVVKYY   65 (267)
T ss_pred             CcceeeeeecCCCCe----EEEEEEEcC-----CCcEEEEEEeccCCcchHHHHHHHHHHHHHhcC------CCCEEEEE
Confidence            479999999999999    999999887     78999999986432   3456789999999994      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +.+.     ..+..++||| ++++++|.+++.....      ...+++                    ..++.++.||+.
T Consensus        66 ~~~~-----~~~~~~iv~e-~~~~~~l~~~~~~~~~------~~~~~~--------------------~~~~~~~~ql~~  113 (267)
T cd06610          66 TSFV-----VGDELWLVMP-YLSGGSLLDIMKSSYP------RGGLDE--------------------AIIATVLKEVLK  113 (267)
T ss_pred             EEEe-----eCCEEEEEEe-ccCCCcHHHHHHHhcc------cCCCCH--------------------HHHHHHHHHHHH
Confidence            9998     7789999999 9999999999976421      013443                    457789999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-------------CCCCCCcccccCCCCCCchhhHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-------------GPNNSSPDSNMDRRQMMIAFDMRC  309 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-------------~~~Y~APE~l~~~~~ys~ksDIWS  309 (667)
                      ||.|||++||+|+||||+||++++ ++.++|+|||++..+...             ...|+|||.+.....++.++|+||
T Consensus       114 al~~lh~~~i~h~~l~p~ni~~~~-~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~s  192 (267)
T cd06610         114 GLEYLHSNGQIHRDIKAGNILLGE-DGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWS  192 (267)
T ss_pred             HHHHHHhCCeecCCCCHHhEEEcC-CCCEEEcccchHHHhccCccccccccccccCChhhcChHHHccccCcCcccchHh
Confidence            999999999999999999999998 889999999998755432             246999997666557899999999


Q ss_pred             HHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          310 VGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       310 LGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      |||++|+|++|+.||.....           .....+.    .....+.. ........+++++++||.+||..||++||
T Consensus       193 lG~i~~~l~~g~~p~~~~~~-----------~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp  256 (267)
T cd06610         193 FGITAIELATGAAPYSKYPP-----------MKVLMLT----LQNDPPSL-ETGADYKKYSKSFRKMISLCLQKDPSKRP  256 (267)
T ss_pred             HhHHHHHHHhCCCCccccCh-----------hhhHHHH----hcCCCCCc-CCccccccccHHHHHHHHHHcCCChhhCc
Confidence            99999999999999852211           1111111    11111100 00111246778999999999999999999


Q ss_pred             CHHHHHcCCCC
Q 005958          390 SCLDALRHPFL  400 (667)
Q Consensus       390 Sa~elL~HPwf  400 (667)
                      +++++++||||
T Consensus       257 ~~~~ll~~p~~  267 (267)
T cd06610         257 TAEELLKHKFF  267 (267)
T ss_pred             CHHHHhhCCCC
Confidence            99999999998

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=100.00  E-value=8.2e-38  Score=325.41  Aligned_cols=249  Identities=18%  Similarity=0.223  Sum_probs=198.7

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCCCcceEEEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGY  164 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~  164 (667)
                      .|++.+.||+|+||    .||+|.+..     ++..+|+|.+...  ...+...+|+++++.+      +||||++++++
T Consensus         6 ~~~i~~~lg~g~~g----~v~~~~~~~-----~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l------~h~~ii~~~~~   70 (282)
T cd06643           6 FWEIIGELGDGAFG----KVYKAQNKE-----TGVLAAAKVIDTKSEEELEDYMVEIDILASC------DHPNIVKLLDA   70 (282)
T ss_pred             HHHHHhhcccCCCe----EEEEEEECC-----CCeEEEEEEeCCCCHHHHHHHHHHHHHHHHC------CCCCeeeEEEE
Confidence            37889999999999    999999987     7899999998653  2334568899999999      49999999999


Q ss_pred             EEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHH
Q 005958          165 VSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGV  244 (667)
Q Consensus       165 ~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL  244 (667)
                      +.     ..+..|+||| |+++|+|..++.+..        ..+++                    ..+..++.|++.||
T Consensus        71 ~~-----~~~~~~~v~e-~~~~~~l~~~~~~~~--------~~l~~--------------------~~~~~~~~qi~~~L  116 (282)
T cd06643          71 FY-----YENNLWILIE-FCAGGAVDAVMLELE--------RPLTE--------------------PQIRVVCKQTLEAL  116 (282)
T ss_pred             Ee-----eCCEEEEEEE-ecCCCcHHHHHHhcC--------CCCCH--------------------HHHHHHHHHHHHHH
Confidence            98     7789999999 999999999876532        13444                    45778999999999


Q ss_pred             HHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCccccc----CCCCCCchhhHHHHH
Q 005958          245 NYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNM----DRRQMMIAFDMRCVG  311 (667)
Q Consensus       245 ~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~----~~~~ys~ksDIWSLG  311 (667)
                      .|||+.||+||||||+|||++. ++.+||+|||++.....         +...|+|||.+.    ....++.++||||+|
T Consensus       117 ~~LH~~~i~H~dlkp~nili~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG  195 (282)
T cd06643         117 NYLHENKIIHRDLKAGNILFTL-DGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLG  195 (282)
T ss_pred             HHHHHCCeeecCCCcccEEEcc-CCCEEEccccccccccccccccccccccccccCHhhccccCCCCCCCCccchhhhHH
Confidence            9999999999999999999998 89999999999865432         236799999764    344578899999999


Q ss_pred             HHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH
Q 005958          312 FMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC  391 (667)
Q Consensus       312 viLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa  391 (667)
                      |++|||++|.+||....            +..   ..........+    .......++.++++||.+||+.||++||++
T Consensus       196 vil~el~~g~~p~~~~~------------~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~  256 (282)
T cd06643         196 ITLIEMAQIEPPHHELN------------PMR---VLLKIAKSEPP----TLAQPSRWSSEFKDFLKKCLEKNVDARWTT  256 (282)
T ss_pred             HHHHHHccCCCCccccC------------HHH---HHHHHhhcCCC----CCCCccccCHHHHHHHHHHccCChhhCcCH
Confidence            99999999999985321            111   11111111111    112234567899999999999999999999


Q ss_pred             HHHHcCCCCCCCC
Q 005958          392 LDALRHPFLCGPR  404 (667)
Q Consensus       392 ~elL~HPwf~~~~  404 (667)
                      +++++||||....
T Consensus       257 ~~il~~~~~~~~~  269 (282)
T cd06643         257 TQLLQHPFVTVNS  269 (282)
T ss_pred             HHHhcCCCEeccC
Confidence            9999999998754

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=100.00  E-value=1e-37  Score=328.30  Aligned_cols=248  Identities=20%  Similarity=0.239  Sum_probs=200.3

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ..+|++.+.||.|+||    .||+|.+..     +++.||+|.+....  ..+.+.+|+.+++.+      +||||++++
T Consensus        18 ~~~y~~~~~lg~g~~g----~v~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~------~h~~i~~~~   82 (297)
T cd06656          18 KKKYTRFEKIGQGASG----TVYTAIDIA-----TGQEVAIKQMNLQQQPKKELIINEILVMREN------KNPNIVNYL   82 (297)
T ss_pred             hhhceeeeeeccCCCe----EEEEEEECC-----CCCEEEEEEEecCccchHHHHHHHHHHHHhC------CCCCEeeEE
Confidence            3789999999999999    999999987     78999999987532  334568899999998      499999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     ..+..|+||| |+++++|.+++.+.          .+++                    ..+..++.|++.
T Consensus        83 ~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~----------~~~~--------------------~~~~~~~~~l~~  126 (297)
T cd06656          83 DSYL-----VGDELWVVME-YLAGGSLTDVVTET----------CMDE--------------------GQIAAVCRECLQ  126 (297)
T ss_pred             EEEe-----cCCEEEEeec-ccCCCCHHHHHHhC----------CCCH--------------------HHHHHHHHHHHH
Confidence            9998     7789999999 99999999998753          2333                    457789999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      ||.|||+.||+||||||+|||++. ++.++|+|||++......         .+.|+|||.+ ....++.++||||+||+
T Consensus       127 ~L~~LH~~~i~H~dL~p~Nili~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slGvi  204 (297)
T cd06656         127 ALDFLHSNQVIHRDIKSDNILLGM-DGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVV-TRKAYGPKVDIWSLGIM  204 (297)
T ss_pred             HHHHHHHCCcccCCCCHHHEEECC-CCCEEECcCccceEccCCccCcCcccCCccccCHHHH-cCCCCCcHHHHHHHHHH
Confidence            999999999999999999999998 899999999998754322         2579999955 44568999999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      +|+|++|.+||.........+           .    ....    ...........++.+++||.+||..||++||++++
T Consensus       205 l~~l~tg~~pf~~~~~~~~~~-----------~----~~~~----~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~  265 (297)
T cd06656         205 AIEMVEGEPPYLNENPLRALY-----------L----IATN----GTPELQNPERLSAVFRDFLNRCLEMDVDRRGSAKE  265 (297)
T ss_pred             HHHHHhCCCCCCCCCcchhee-----------e----eccC----CCCCCCCccccCHHHHHHHHHHccCChhhCcCHHH
Confidence            999999999985321110000           0    0000    00111223456788999999999999999999999


Q ss_pred             HHcCCCCCCCC
Q 005958          394 ALRHPFLCGPR  404 (667)
Q Consensus       394 lL~HPwf~~~~  404 (667)
                      +++||||....
T Consensus       266 il~~~~~~~~~  276 (297)
T cd06656         266 LLQHPFLKLAK  276 (297)
T ss_pred             HhcCchhcccc
Confidence            99999998765

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>PHA03210 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=9.8e-38  Score=352.63  Aligned_cols=273  Identities=16%  Similarity=0.201  Sum_probs=190.9

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEE------------------EEcc-hhhHHHHHHHHHHHH
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLR------------------QLIS-VQAQRRGRRAIEVLK  145 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK------------------~i~~-~~~~~~~~rEi~iL~  145 (667)
                      .++|++++.||+|+||    +||+|..+..    .+..+++|                  .+.. ......+.+|+.+|+
T Consensus       147 ~~~Y~ii~~LG~G~fG----~Vyl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~  218 (501)
T PHA03210        147 LAHFRVIDDLPAGAFG----KIFICALRAS----TEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALG  218 (501)
T ss_pred             hhccEEEeEecCCCCc----ceEEEEEecc----chhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHH
Confidence            5789999999999999    9999987642    12222222                  2111 122345689999999


Q ss_pred             HHhhccCCCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCC
Q 005958          146 KLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPA  225 (667)
Q Consensus       146 ~L~~~~~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~  225 (667)
                      ++.      ||||+++++++.     ..+..|+||| ++.+ +|.+++.....        ...+               
T Consensus       219 ~l~------HpnIv~l~~~~~-----~~~~~~lv~e-~~~~-~l~~~l~~~~~--------~~~~---------------  262 (501)
T PHA03210        219 RLN------HENILKIEEILR-----SEANTYMITQ-KYDF-DLYSFMYDEAF--------DWKD---------------  262 (501)
T ss_pred             hCC------CCCcCcEeEEEE-----ECCeeEEEEe-cccc-CHHHHHhhccc--------cccc---------------
Confidence            994      999999999998     7788999999 8876 89988865321        0000               


Q ss_pred             ccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC----------CCCCCCCcccc
Q 005958          226 ASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE----------DGPNNSSPDSN  295 (667)
Q Consensus       226 ~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~----------~~~~Y~APE~l  295 (667)
                       ......++.|+.||+.||.|||++||+||||||+|||++. ++.+||+|||++..+..          +...|+|||++
T Consensus       263 -~~~~~~~~~i~~ql~~aL~yLH~~gIiHrDLKP~NILl~~-~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~  340 (501)
T PHA03210        263 -RPLLKQTRAIMKQLLCAVEYIHDKKLIHRDIKLENIFLNC-DGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEIL  340 (501)
T ss_pred             -cccHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECC-CCCEEEEeCCCceecCcccccccccccCCcCCCCchhh
Confidence             0112457789999999999999999999999999999998 89999999999976543          23789999965


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHhCCCC-Chh-----hhhhhhhhhccCCChh-------HHHHHHHHHhccCCCCCCCC
Q 005958          296 MDRRQMMIAFDMRCVGFMMAKMVLRELM-DPL-----IFTKFKSFLTKGIDPS-------CLREFLLQVLNRNSSSGNTG  362 (667)
Q Consensus       296 ~~~~~ys~ksDIWSLGviLyemltG~~P-F~~-----~~~~~~~~~~~g~~~~-------~l~~~~~~~~~~~~~~~~~~  362 (667)
                      . ...|+.++|||||||++|||++|..+ |..     ..++.+.+...+....       .+.+++........+.....
T Consensus       341 ~-~~~~~~~~DiwSlGvil~ell~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~  419 (501)
T PHA03210        341 A-GDGYCEITDIWSCGLILLDMLSHDFCPIGDGGGKPGKQLLKIIDSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVPP  419 (501)
T ss_pred             c-CCCCCcHHHHHHHHHHHHHHHHCCCCCccCCCCCHHHHHHHHHHhcccChhhcCCcHHHHHHHhhhhhcccCccchhh
Confidence            4 45699999999999999999998754 321     1222222222221111       12222211100000000000


Q ss_pred             cccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          363 FQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       363 ~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      .-.....+.++.++|.+||++||.+|||+.|+|+||||....
T Consensus       420 ~~~~~~~~~~~~~li~kmL~~DP~~Rpsa~elL~hp~f~~~~  461 (501)
T PHA03210        420 LIRNLGLPADFEYPLVKMLTFDWHLRPGAAELLALPLFSAEE  461 (501)
T ss_pred             HHHhcCCChHHHHHHHHHhccCcccCcCHHHHhhChhhhcCC
Confidence            001123567889999999999999999999999999998754

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=100.00  E-value=2e-37  Score=326.14  Aligned_cols=247  Identities=21%  Similarity=0.244  Sum_probs=200.7

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      .+|++.+.||.|+||    .||+|.+..     +++.||+|.+...  ...+.+.+|+.+++.++      ||||+++++
T Consensus        19 ~~y~~~~~lg~g~~g----~vy~~~~~~-----~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~------h~~iv~~~~   83 (296)
T cd06655          19 KKYTRYEKIGQGASG----TVFTAIDVA-----TGQEVAIKQINLQKQPKKELIINEILVMKELK------NPNIVNFLD   83 (296)
T ss_pred             ceEEEEEEEecCCCe----EEEEEEEcC-----CCcEEEEEEEecccCchHHHHHHHHHHHHhcC------CCceeeeee
Confidence            679999999999999    999999987     7999999998652  23356688999999995      999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++.     ....+|+||| |+.+++|.+++...          .+++                    ..+..++.|++.|
T Consensus        84 ~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~----------~l~~--------------------~~~~~i~~~l~~a  127 (296)
T cd06655          84 SFL-----VGDELFVVME-YLAGGSLTDVVTET----------CMDE--------------------AQIAAVCRECLQA  127 (296)
T ss_pred             eEe-----cCceEEEEEE-ecCCCcHHHHHHhc----------CCCH--------------------HHHHHHHHHHHHH
Confidence            998     7789999999 99999999998753          3443                    4577899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      |.|||++||+|+||||+||+++. ++.+||+|||++......         ...|+|||.+ ....++.++|||||||++
T Consensus       128 l~~LH~~~i~H~dL~p~Nili~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Dv~slGvil  205 (296)
T cd06655         128 LEFLHANQVIHRDIKSDNVLLGM-DGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVV-TRKAYGPKVDIWSLGIMA  205 (296)
T ss_pred             HHHHHHCCcccCCCCHHHEEECC-CCCEEEccCccchhcccccccCCCcCCCccccCcchh-cCCCCCchhhHHHHHHHH
Confidence            99999999999999999999998 899999999998754322         2579999954 445588999999999999


Q ss_pred             HHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHH
Q 005958          315 AKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDA  394 (667)
Q Consensus       315 yemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~el  394 (667)
                      |+|++|++||....            +......   ......    ........+++.+++||.+||..||++||++.++
T Consensus       206 ~~lltg~~pf~~~~------------~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~i  266 (296)
T cd06655         206 IEMVEGEPPYLNEN------------PLRALYL---IATNGT----PELQNPEKLSPIFRDFLNRCLEMDVEKRGSAKEL  266 (296)
T ss_pred             HHHHhCCCCCCCCC------------HHHHHHH---HHhcCC----cccCCcccCCHHHHHHHHHHhhcChhhCCCHHHH
Confidence            99999999985221            1111111   111100    1122334678899999999999999999999999


Q ss_pred             HcCCCCCCCC
Q 005958          395 LRHPFLCGPR  404 (667)
Q Consensus       395 L~HPwf~~~~  404 (667)
                      ++||||+...
T Consensus       267 l~~~~~~~~~  276 (296)
T cd06655         267 LQHPFLKLAK  276 (296)
T ss_pred             hhChHhhhcc
Confidence            9999998754

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=3.2e-37  Score=322.33  Aligned_cols=263  Identities=16%  Similarity=0.216  Sum_probs=200.6

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ++|+..+.||.|++|    .||+|.+..     +++.||+|.+....   ....+.+|+++++.++      ||||++++
T Consensus         1 ~~~~~~~~lg~g~~~----~v~~~~~~~-----~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~------h~~iv~~~   65 (287)
T cd06621           1 EKIVELSRLGEGAGG----SVTKCRLKN-----TGMIFALKTITTDPNPDLQKQILRELEINKSCK------SPYIVKYY   65 (287)
T ss_pred             CceEEEEEeccCCce----EEEEEEECC-----CCeEEEEEEEecCCchHHHHHHHHHHHHHHhCC------CCCeeeee
Confidence            479999999999999    999999987     78999999987532   3356789999999994      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++...   ..+.+|+||| |+++++|.+++.....     ....++                    ...+..++.||+.
T Consensus        66 ~~~~~~---~~~~~~lv~e-~~~~~~L~~~l~~~~~-----~~~~l~--------------------~~~~~~i~~~i~~  116 (287)
T cd06621          66 GAFLDE---SSSSIGIAME-YCEGGSLDSIYKKVKK-----RGGRIG--------------------EKVLGKIAESVLK  116 (287)
T ss_pred             eEEEcc---CCCeEEEEEE-ecCCCCHHHHHHHHHh-----cCCCCC--------------------HHHHHHHHHHHHH
Confidence            998733   4568999999 9999999998865221     011333                    3567889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-------CCCCCCCcccccCCCCCCchhhHHHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMA  315 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLy  315 (667)
                      ||.|||+.|++|+||+|+||+++. ++.++|+|||++.....       ....|+|||.+ ....++.++|||||||++|
T Consensus       117 ~L~~lH~~~i~H~dl~~~nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~~pE~~-~~~~~~~~~Dv~slG~il~  194 (287)
T cd06621         117 GLSYLHSRKIIHRDIKPSNILLTR-KGQVKLCDFGVSGELVNSLAGTFTGTSFYMAPERI-QGKPYSITSDVWSLGLTLL  194 (287)
T ss_pred             HHHHHHHCCcccCCCCHHHEEEec-CCeEEEeeccccccccccccccccCCccccCHHHh-cCCCCCchhhHHHHHHHHH
Confidence            999999999999999999999998 88999999999875432       23579999954 4556899999999999999


Q ss_pred             HHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHH
Q 005958          316 KMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDAL  395 (667)
Q Consensus       316 emltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL  395 (667)
                      +|++|..||.....       .-..+.++...+.   ....+............++++.+||.+||..||++|||+.|++
T Consensus       195 ~l~~g~~p~~~~~~-------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~eil  264 (287)
T cd06621         195 EVAQNRFPFPPEGE-------PPLGPIELLSYIV---NMPNPELKDEPGNGIKWSEEFKDFIKQCLEKDPTRRPTPWDML  264 (287)
T ss_pred             HHHhCCCCCCcccC-------CCCChHHHHHHHh---cCCchhhccCCCCCCchHHHHHHHHHHHcCCCcccCCCHHHHH
Confidence            99999999863211       0001112222221   1111100011111123467899999999999999999999999


Q ss_pred             cCCCCCCCC
Q 005958          396 RHPFLCGPR  404 (667)
Q Consensus       396 ~HPwf~~~~  404 (667)
                      +||||....
T Consensus       265 ~~~~~~~~~  273 (287)
T cd06621         265 EHPWIKAQM  273 (287)
T ss_pred             hCccccccc
Confidence            999996654

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=7.4e-38  Score=335.45  Aligned_cols=272  Identities=19%  Similarity=0.278  Sum_probs=204.8

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      .+|++.+.||+|+||    +||+|++..     +++.||||.+...    .......+|+.+++.+.      ||||+++
T Consensus         5 ~~y~~~~~lg~G~~~----~vy~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~------h~ni~~~   69 (337)
T cd07858           5 TKYVPIKPIGRGAYG----IVCSAKNSE-----TNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLD------HENVIAI   69 (337)
T ss_pred             cceeEEEEeccCCCe----EEEEEEecC-----CCCeEEEEEecccccccchhHHHHHHHHHHHhcC------CCCccch
Confidence            579999999999999    999999987     8999999998642    12345678999999994      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++...........|+||| |+++ +|.+++...+         .+++                    ..++.++.||+
T Consensus        70 ~~~~~~~~~~~~~~~~lv~e-~~~~-~L~~~~~~~~---------~l~~--------------------~~~~~i~~qi~  118 (337)
T cd07858          70 KDIMPPPHREAFNDVYIVYE-LMDT-DLHQIIRSSQ---------TLSD--------------------DHCQYFLYQLL  118 (337)
T ss_pred             HHheecccccccCcEEEEEe-CCCC-CHHHHHhcCC---------CCCH--------------------HHHHHHHHHHH
Confidence            99887432223356899999 9985 9999987644         4554                    45788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      .||.|||++||+||||||+||+++. ++.+||+|||++......         ...|+|||.+.....++.++|||||||
T Consensus       119 ~aL~~LH~~~i~H~dlkp~Nil~~~-~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~  197 (337)
T cd07858         119 RGLKYIHSANVLHRDLKPSNLLLNA-NCDLKICDFGLARTTSEKGDFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGC  197 (337)
T ss_pred             HHHHHHHhCCEecCCCCHHHEEEcC-CCCEEECcCccccccCCCcccccccccccCccChHHHhcCCCCCCcccHHHHHH
Confidence            9999999999999999999999998 899999999999865433         256999997766566899999999999


Q ss_pred             HHHHHHhCCCCChhhh---hhhhhhhccCCChhHHHHHH-----HHHhccCCCCCCCC-cccccCCCHHHHHHHHHhhhc
Q 005958          313 MMAKMVLRELMDPLIF---TKFKSFLTKGIDPSCLREFL-----LQVLNRNSSSGNTG-FQILDRNWGAGWNLLSLLLAT  383 (667)
Q Consensus       313 iLyemltG~~PF~~~~---~~~~~~~~~g~~~~~l~~~~-----~~~~~~~~~~~~~~-~~~~~~~s~e~~dLI~~~L~~  383 (667)
                      ++|+|++|++||....   ....+....|.+.......+     .............. ....+.+++++++||.+||+.
T Consensus       198 il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  277 (337)
T cd07858         198 IFAELLGRKPLFPGKDYVHQLKLITELLGSPSEEDLGFIRNEKARRYIRSLPYTPRQSFARLFPHANPLAIDLLEKMLVF  277 (337)
T ss_pred             HHHHHHcCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcCchhhhHHHHhcCcccccCHHHHcccCCHHHHHHHHHHhcC
Confidence            9999999999996321   11111112222221111100     00000000000001 112356789999999999999


Q ss_pred             CcCCCCCHHHHHcCCCCCCCC
Q 005958          384 KPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       384 DP~kRpSa~elL~HPwf~~~~  404 (667)
                      ||++|||++++|+||||....
T Consensus       278 ~P~~Rps~~ell~h~~~~~~~  298 (337)
T cd07858         278 DPSKRITVEEALAHPYLASLH  298 (337)
T ss_pred             ChhhccCHHHHHcCcchhhhc
Confidence            999999999999999998765

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=100.00  E-value=2.3e-37  Score=318.54  Aligned_cols=242  Identities=18%  Similarity=0.224  Sum_probs=193.8

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--------hHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--------AQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--------~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      +|++.+.||.|+||    .||+|.+.      +++.+|+|.+....        ....+.+|+++++.++      |+||
T Consensus         1 ~~~~~~~ig~g~~~----~v~~~~~~------~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~------~~~i   64 (265)
T cd06631           1 EWTKGEVLGKGAYG----TVYCGLTN------QGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLK------HVNI   64 (265)
T ss_pred             CccccceEeccCCe----EEEEEEEc------CCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcC------CCCE
Confidence            58899999999999    99999874      58899999886421        1234688999999994      9999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      +++++++.     +.+..++||| |+++|+|.+++.+.+         .+++                    ..++.++.
T Consensus        65 ~~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~~~~~  109 (265)
T cd06631          65 VQYLGTCL-----DDNTISIFME-FVPGGSISSILNRFG---------PLPE--------------------PVFCKYTK  109 (265)
T ss_pred             eeEeeEee-----cCCeEEEEEe-cCCCCcHHHHHHhcC---------CCCH--------------------HHHHHHHH
Confidence            99999998     7789999999 999999999998754         3443                    45778999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------------CCCCCCCcccccCCCCCCc
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------------DGPNNSSPDSNMDRRQMMI  303 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------------~~~~Y~APE~l~~~~~ys~  303 (667)
                      |++.||+|||+.||+|+||+|+||+++. ++.++|+|||++.....               +...|+|||.+ ....++.
T Consensus       110 qi~~~l~~lH~~~i~H~dl~p~nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~-~~~~~~~  187 (265)
T cd06631         110 QILDGVAYLHNNCVVHRDIKGNNVMLMP-NGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVI-NESGYGR  187 (265)
T ss_pred             HHHHHHHHHHhCCcccCCcCHHhEEECC-CCeEEeccchhhHhhhhccccccccccccccCCCccccChhhh-cCCCCcc
Confidence            9999999999999999999999999998 89999999999875421               12569999954 4556899


Q ss_pred             hhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhc
Q 005958          304 AFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLAT  383 (667)
Q Consensus       304 ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~  383 (667)
                      ++|||||||++|+|++|.+||......              .... .......    ........+++++.+||.+||..
T Consensus       188 ~~Dv~slG~~~~~l~~g~~p~~~~~~~--------------~~~~-~~~~~~~----~~~~~~~~~~~~~~~~i~~~l~~  248 (265)
T cd06631         188 KSDIWSIGCTVFEMATGKPPLASMDRL--------------AAMF-YIGAHRG----LMPRLPDSFSAAAIDFVTSCLTR  248 (265)
T ss_pred             hhhHHHHHHHHHHHHhCCCccccCChH--------------HHHH-HhhhccC----CCCCCCCCCCHHHHHHHHHHhcC
Confidence            999999999999999999998532111              0110 0000000    00122345788999999999999


Q ss_pred             CcCCCCCHHHHHcCCCC
Q 005958          384 KPSKRISCLDALRHPFL  400 (667)
Q Consensus       384 DP~kRpSa~elL~HPwf  400 (667)
                      ||++||++.++|+||||
T Consensus       249 ~p~~Rp~~~~~l~~~~~  265 (265)
T cd06631         249 DQHERPSALQLLRHDFL  265 (265)
T ss_pred             CcccCCCHHHHhcCCCC
Confidence            99999999999999997

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1e-38  Score=347.67  Aligned_cols=249  Identities=20%  Similarity=0.258  Sum_probs=211.8

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhH----HHHHHHHHHHHHHhhccCCCCCcc
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQ----RRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~----~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      .....|.+.+.||+|.|+    +|.+|++..     ++..||||++.+.+..    ....+|+++|+.|      +||||
T Consensus        53 ~~vg~y~i~~tig~g~f~----~V~La~~~~-----t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l------~HPnI  117 (596)
T KOG0586|consen   53 NSVGLYVIIKTIGKGNFA----KVKLARHIL-----TGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSL------NHPNI  117 (596)
T ss_pred             ccccceeeeeeeccceeE----EEEeeEecC-----CCceEEEEEehhcccChHHHHHHHHHHHHHHhc------CCcce
Confidence            345889999999999999    999999998     8999999999874322    3468999999999      59999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      |+++.+.+     ....+|+||| |+.+|.+++|+.+++         +..|..                    ++.++.
T Consensus       118 vkl~~v~~-----t~~~lylV~e-ya~~ge~~~yl~~~g---------r~~e~~--------------------ar~~F~  162 (596)
T KOG0586|consen  118 VKLFSVIE-----TEATLYLVME-YASGGELFDYLVKHG---------RMKEKE--------------------ARAKFR  162 (596)
T ss_pred             eeeeeeee-----ecceeEEEEE-eccCchhHHHHHhcc---------cchhhh--------------------hhhhhH
Confidence            99999999     7899999999 999999999999987         555533                    567999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC--------CCCCCcccccCCCCCCchhhHHHH
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG--------PNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~--------~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      |+++|++|||+++|||||||.+|||++. +.++||+|||++..+..+.        +.|.|||++.+..+.++.+|+||+
T Consensus       163 q~vsaveYcH~k~ivHrdLk~eNilL~~-~mnikIaDfgfS~~~~~~~~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wsl  241 (596)
T KOG0586|consen  163 QIVSAVEYCHSKNIVHRDLKAENILLDE-NMNIKIADFGFSTFFDYGLMLQTFCGSPPYAAPELFNGKKYDGPEVDIWSL  241 (596)
T ss_pred             HHHHHHHHHhhcceeccccchhhccccc-ccceeeeccccceeecccccccccCCCCCccChHhhcCcccCCcceehhhh
Confidence            9999999999999999999999999998 8889999999999887543        889999988888877999999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      |+++|-|+.|.+||.            |..-..+++..   +.       ..+.+.-.++.++.+||+++|..+|.+|++
T Consensus       242 gvvly~LV~GsLPFD------------G~~lk~Lr~rv---l~-------gk~rIp~~ms~dce~lLrk~lvl~Pskr~~  299 (596)
T KOG0586|consen  242 GVVLYALVEGSLPFD------------GQNLKELRPRV---LR-------GKYRIPFYMSCDCEDLLRKFLVLNPSKRGP  299 (596)
T ss_pred             hhhheeeeecccccC------------Ccccccccchh---ee-------eeecccceeechhHHHHHHhhccCccccCC
Confidence            999999999999995            32222222221   11       122333456789999999999999999999


Q ss_pred             HHHHHcCCCCCCCC
Q 005958          391 CLDALRHPFLCGPR  404 (667)
Q Consensus       391 a~elL~HPwf~~~~  404 (667)
                      +++++.|+|.....
T Consensus       300 ~dqim~~~W~n~~~  313 (596)
T KOG0586|consen  300 CDQIMKDRWRNDLL  313 (596)
T ss_pred             HHHhhhhcccchhh
Confidence            99999999997654

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=1e-37  Score=339.98  Aligned_cols=281  Identities=14%  Similarity=0.102  Sum_probs=201.8

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      ...+..++|++.+.||+|+||    .||+|++.......++..||||+++...   ..+.+.+|+.+|+.+.     +||
T Consensus        29 ~~~~~~~~~~~~~~LG~G~fG----~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~-----~Hp   99 (375)
T cd05104          29 KWEFPRNRLSFGKTLGAGAFG----KVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLG-----NHI   99 (375)
T ss_pred             ccccchHHeehhheecCCccc----eEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhc-----CCc
Confidence            445666799999999999999    9999986432222367899999987532   3345688999999995     599


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHH---------------HhhcCC---
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEES---------------VRKVGD---  218 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~---------------a~~~~~---  218 (667)
                      ||+++++++.     ..+..++||| |+++|+|.+++................+..               ...+..   
T Consensus       100 nIv~l~~~~~-----~~~~~~lv~E-~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  173 (375)
T cd05104         100 NIVNLLGACT-----VGGPTLVITE-YCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKP  173 (375)
T ss_pred             ceeeeeeeec-----cCCcceeeeh-hccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCC
Confidence            9999999998     7788999999 999999999997643110000000000000               000000   


Q ss_pred             ----------------------------CCCCCCCccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCe
Q 005958          219 ----------------------------DSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRH  270 (667)
Q Consensus       219 ----------------------------~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~  270 (667)
                                                  .........++...+..++.||+.||.|||++||+||||||+|||++. ++.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nill~~-~~~  252 (375)
T cd05104         174 GVSYVVPTKADKRRSVRSGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASKNCIHRDLAARNILLTH-GRI  252 (375)
T ss_pred             CcccccccccccccccccceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCchhhEEEEC-CCc
Confidence                                        000011234667889999999999999999999999999999999998 889


Q ss_pred             EEEeeecccccccCCC-----------CCCCCcccccCCCCCCchhhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccC
Q 005958          271 IKVGILGNAADFYEDG-----------PNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKG  338 (667)
Q Consensus       271 vKL~DFGlA~~~~~~~-----------~~Y~APE~l~~~~~ys~ksDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g  338 (667)
                      +||+|||++.......           ..|+|||.+. ...++.++|||||||++|||++ |.+||....          
T Consensus       253 ~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~----------  321 (375)
T cd05104         253 TKICDFGLARDIRNDSNYVVKGNARLPVKWMAPESIF-NCVYTFESDVWSYGILLWEIFSLGSSPYPGMP----------  321 (375)
T ss_pred             EEEecCccceeccCcccccccCCCCCCcceeChhHhc-CCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCC----------
Confidence            9999999997553321           3599999654 4568999999999999999998 888885321          


Q ss_pred             CChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcC
Q 005958          339 IDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRH  397 (667)
Q Consensus       339 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~H  397 (667)
                       ........+.....         .......+.++++||.+||+.||++|||+.|+++.
T Consensus       322 -~~~~~~~~~~~~~~---------~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~  370 (375)
T cd05104         322 -VDSKFYKMIKEGYR---------MLSPECAPSEMYDIMKSCWDADPLKRPTFKQIVQL  370 (375)
T ss_pred             -chHHHHHHHHhCcc---------CCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHH
Confidence             11122222221110         11123456799999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.9e-37  Score=318.21  Aligned_cols=245  Identities=17%  Similarity=0.248  Sum_probs=191.4

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-----HHHHHHHHHHHHHHhhccCCCCCcceEEEEEEE
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-----QRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVS  166 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-----~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~  166 (667)
                      +.||.|+||    .||+|.+..     +++.||+|.+.+...     ......|..++....     +|+||+++++++.
T Consensus         2 ~~l~~g~~~----~v~~a~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~-----~~~~i~~~~~~~~   67 (260)
T cd05611           2 KPISKGAFG----SVYLAKKRS-----TGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQG-----ESPYVAKLYYSFQ   67 (260)
T ss_pred             ccCCcCCCe----eEEEEEecC-----CCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcC-----CCCCeeeeeeeEE
Confidence            579999999    999999987     789999999875321     122344555544443     6999999999998


Q ss_pred             ecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHH
Q 005958          167 SHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNY  246 (667)
Q Consensus       167 ~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~y  246 (667)
                           .++.+|+||| |+++++|.+++...+         .+++                    ..+..++.||+.||.|
T Consensus        68 -----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~~i~~qi~~aL~~  112 (260)
T cd05611          68 -----SKDYLYLVME-YLNGGDCASLIKTLG---------GLPE--------------------DWAKQYIAEVVLGVED  112 (260)
T ss_pred             -----cCCeEEEEEe-ccCCCCHHHHHHHcC---------CCCH--------------------HHHHHHHHHHHHHHHH
Confidence                 7789999999 999999999998654         3343                    4577899999999999


Q ss_pred             HHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-----CCCCCCCcccccCCCCCCchhhHHHHHHHHHHHHhCC
Q 005958          247 LHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-----DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRE  321 (667)
Q Consensus       247 LHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-----~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG~  321 (667)
                      ||++||+|+||+|+||+++. ++.+||+|||++.....     +...|+|||.+.+. .++.++||||+|+++|+|++|.
T Consensus       113 lH~~~i~H~dl~p~nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~y~~pe~~~~~-~~~~~~Dv~slG~il~~l~~g~  190 (260)
T cd05611         113 LHQRGIIHRDIKPENLLIDQ-TGHLKLTDFGLSRNGLENKKFVGTPDYLAPETILGV-GDDKMSDWWSLGCVIFEFLFGY  190 (260)
T ss_pred             HHHCCeecCCCCHHHeEECC-CCcEEEeecccceeccccccCCCCcCccChhhhcCC-CCcchhhhHHHHHHHHHHHHCC
Confidence            99999999999999999998 89999999999875432     23679999966554 4899999999999999999999


Q ss_pred             CCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH---HHHHcCC
Q 005958          322 LMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC---LDALRHP  398 (667)
Q Consensus       322 ~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa---~elL~HP  398 (667)
                      +||...            ........+.   .....   ........+++++.++|.+||+.||++||++   +|+|.||
T Consensus       191 ~p~~~~------------~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~l~~~  252 (260)
T cd05611         191 PPFHAE------------TPDAVFDNIL---SRRIN---WPEEVKEFCSPEAVDLINRLLCMDPAKRLGANGYQEIKSHP  252 (260)
T ss_pred             CCCCCC------------CHHHHHHHHH---hcccC---CCCcccccCCHHHHHHHHHHccCCHHHccCCCcHHHHHcCh
Confidence            998521            2222111111   11100   0111223568899999999999999999955   7999999


Q ss_pred             CCCCCCC
Q 005958          399 FLCGPRW  405 (667)
Q Consensus       399 wf~~~~~  405 (667)
                      ||....|
T Consensus       253 ~~~~~~~  259 (260)
T cd05611         253 FFKSINW  259 (260)
T ss_pred             HhhcCCC
Confidence            9998876

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.1e-37  Score=316.04  Aligned_cols=247  Identities=19%  Similarity=0.233  Sum_probs=197.5

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--hHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      ++|++.+.||.|+||    .||+|.+..     +++.+|+|++....  ..+.+.+|+++++.++      ||||+++++
T Consensus         3 ~~~~~~~~l~~g~~~----~v~~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~------h~~i~~~~~   67 (262)
T cd06613           3 EDYELIQRIGSGTYG----DVYKARDIA-----TGELVAIKVIKLEPGDDFEIIQQEISMLKECR------HPNIVAYFG   67 (262)
T ss_pred             cceEEEEEecCCCce----EEEEeEecC-----CCCEEEEEEEEcCchhhHHHHHHHHHHHHhCC------CCChhceEE
Confidence            789999999999999    999999987     78899999987532  3456789999999994      999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++.     ..+.+|++|| |+++++|.+++....        ..+++                    ..++.++.|++.|
T Consensus        68 ~~~-----~~~~~~l~~e-~~~~~~l~~~~~~~~--------~~l~~--------------------~~~~~~~~ql~~~  113 (262)
T cd06613          68 SYL-----RRDKLWIVME-YCGGGSLQDIYQVTR--------GPLSE--------------------LQIAYVCRETLKG  113 (262)
T ss_pred             EEE-----eCCEEEEEEe-CCCCCcHHHHHHhhc--------cCCCH--------------------HHHHHHHHHHHHH
Confidence            998     7789999999 999999999987642        14554                    4578899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCC--CCCCchhhHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDR--RQMMIAFDMRCVGF  312 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~--~~ys~ksDIWSLGv  312 (667)
                      |.|||++||+|+||||+||+++. ++.+||+|||.+......         ...|+|||.+...  ..++.++|||||||
T Consensus       114 l~~lh~~~i~h~dl~p~ni~i~~-~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~  192 (262)
T cd06613         114 LAYLHETGKIHRDIKGANILLTE-DGDVKLADFGVSAQLTATIAKRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGI  192 (262)
T ss_pred             HHHHHhCCceecCCChhhEEECC-CCCEEECccccchhhhhhhhccccccCCccccCchhhcccccCCcCchhhhHHHHH
Confidence            99999999999999999999998 899999999998765432         2569999965433  26889999999999


Q ss_pred             HHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHH
Q 005958          313 MMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCL  392 (667)
Q Consensus       313 iLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~  392 (667)
                      ++|+|++|.+||.+....           ..........+.      ..........+.++.+||.+||..||.+|||+.
T Consensus       193 ~l~~~~tg~~p~~~~~~~-----------~~~~~~~~~~~~------~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~  255 (262)
T cd06613         193 TAIELAELQPPMFDLHPM-----------RALFLISKSNFP------PPKLKDKEKWSPVFHDFIKKCLTKDPKKRPTAT  255 (262)
T ss_pred             HHHHHHhCCCCCCCCCHH-----------HHHHHHHhccCC------CccccchhhhhHHHHHHHHHHcCCChhhCCCHH
Confidence            999999999998532111           111111000000      001112234567899999999999999999999


Q ss_pred             HHHcCCC
Q 005958          393 DALRHPF  399 (667)
Q Consensus       393 elL~HPw  399 (667)
                      +++.|+|
T Consensus       256 ~il~~~~  262 (262)
T cd06613         256 KLLQHPF  262 (262)
T ss_pred             HHhcCCC
Confidence            9999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=100.00  E-value=3.1e-37  Score=314.89  Aligned_cols=244  Identities=18%  Similarity=0.231  Sum_probs=197.5

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      +|++.+.||+|+||    .||+|.+..     +++.+|+|.+...    .....+.+|+++++.++      ||||++++
T Consensus         1 ~y~~~~~lg~g~~~----~v~~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~------~~~i~~~~   65 (256)
T cd08220           1 KYEKIRVVGRGAFG----IVHLCRRKA-----DQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLS------HPNIIEYY   65 (256)
T ss_pred             CceEEEEecccCce----EEEEEEEcC-----CCcEEEEEEEeccccccHHHHHHHHHHHHHhhCC------CCchhhee
Confidence            58999999999999    999999987     7899999998753    23345788999999994      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +.+.     ..+..++||| |+++++|.+++....       ...+++                    ..+..++.|++.
T Consensus        66 ~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~~-------~~~~~~--------------------~~~~~~~~~i~~  112 (256)
T cd08220          66 ENFL-----EDKALMIVME-YAPGGTLAEYIQKRC-------NSLLDE--------------------DTILHFFVQILL  112 (256)
T ss_pred             eeEe-----cCCEEEEEEe-cCCCCCHHHHHHHhc-------ccCCCH--------------------HHHHHHHHHHHH
Confidence            9998     7789999999 999999999997642       012443                    457789999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      ||+|||++||+|+||||+||+++..++.+||+|||.+......        ...|+|||.+. ...++.++||||+||++
T Consensus       113 ~l~~lh~~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Dv~slG~~l  191 (256)
T cd08220         113 ALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSKAYTVVGTPCYISPELCE-GKPYNQKSDIWALGCVL  191 (256)
T ss_pred             HHHHHHhCCeecCCCCHHHEEEcCCCCEEEEccCCCceecCCCccccccccCCcccCchhcc-CCCCCcccchHHHHHHH
Confidence            9999999999999999999999875667999999999866533        25799999554 45588999999999999


Q ss_pred             HHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHH
Q 005958          315 AKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDA  394 (667)
Q Consensus       315 yemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~el  394 (667)
                      |+|++|..||...            +.....   .......      ..+.....+++++++|.+||..||++|||+.|+
T Consensus       192 ~~l~~~~~~~~~~------------~~~~~~---~~~~~~~------~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l  250 (256)
T cd08220         192 YELASLKRAFEAA------------NLPALV---LKIMSGT------FAPISDRYSPDLRQLILSMLNLDPSKRPQLSQI  250 (256)
T ss_pred             HHHHhCCCCcccC------------chHHHH---HHHHhcC------CCCCCCCcCHHHHHHHHHHccCChhhCCCHHHH
Confidence            9999999998521            111111   1111111      112234578899999999999999999999999


Q ss_pred             HcCCCC
Q 005958          395 LRHPFL  400 (667)
Q Consensus       395 L~HPwf  400 (667)
                      ++||||
T Consensus       251 l~~p~~  256 (256)
T cd08220         251 MAQPIC  256 (256)
T ss_pred             hhCCCC
Confidence            999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=100.00  E-value=1e-37  Score=335.24  Aligned_cols=272  Identities=21%  Similarity=0.300  Sum_probs=201.7

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--hHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      .+|++.+.||.|+||    .||+|.+..     +++.||+|++....  ..+...+|+++++.++      ||||+++++
T Consensus         5 ~~y~~~~~Lg~g~~g----~vy~~~~~~-----~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~------h~~i~~~~~   69 (342)
T cd07854           5 SRYMDLRPLGCGSNG----LVFSAVDSD-----CDKRVAVKKIVLTDPQSVKHALREIKIIRRLD------HDNIVKVYE   69 (342)
T ss_pred             cceEEEEEecCCCCE----EEEEEEECC-----CCcEEEEEEEecCCCchHHHHHHHHHHHHhcC------CCcchhhHh
Confidence            789999999999999    999999987     89999999986532  3355788999999995      999999998


Q ss_pred             EEEecccC---------CCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          164 YVSSHTTS---------GRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       164 ~~~~~~~~---------~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      ++......         .....|+||| |+++ +|.+++...          .+++                    ..++
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~lv~e-~~~~-~L~~~~~~~----------~l~~--------------------~~~~  117 (342)
T cd07854          70 VLGPSGSDLTEDVGSLTELNSVYIVQE-YMET-DLANVLEQG----------PLSE--------------------EHAR  117 (342)
T ss_pred             hhcccccccccccccccccceEEEEee-cccc-cHHHHHHcC----------CCCH--------------------HHHH
Confidence            87633111         1246899999 9986 999888642          3443                    4678


Q ss_pred             HHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC------------CCCCCCCcccccCCCCCC
Q 005958          235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE------------DGPNNSSPDSNMDRRQMM  302 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~------------~~~~Y~APE~l~~~~~ys  302 (667)
                      .++.||+.||.|||++||+||||||+||+++..++.+||+|||.+.....            ....|+|||.+.....++
T Consensus       118 ~~~~qi~~aL~~LH~~givH~dikp~Nili~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  197 (342)
T cd07854         118 LFMYQLLRGLKYIHSANVLHRDLKPANVFINTEDLVLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYT  197 (342)
T ss_pred             HHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCceEEECCcccceecCCccccccccccccccccccCHHHHhCccccC
Confidence            89999999999999999999999999999986567899999999975421            125699999776666789


Q ss_pred             chhhHHHHHHHHHHHHhCCCCChhhhhhh---hhhhccCCChh-HHHHHH---HHHhc-cCCCCCCCCcccccCCCHHHH
Q 005958          303 IAFDMRCVGFMMAKMVLRELMDPLIFTKF---KSFLTKGIDPS-CLREFL---LQVLN-RNSSSGNTGFQILDRNWGAGW  374 (667)
Q Consensus       303 ~ksDIWSLGviLyemltG~~PF~~~~~~~---~~~~~~g~~~~-~l~~~~---~~~~~-~~~~~~~~~~~~~~~~s~e~~  374 (667)
                      .++|||||||++|+|++|+.||.......   ........... ......   ..... .............+..+.+++
T Consensus       198 ~~~DiwSlGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (342)
T cd07854         198 KAIDMWAAGCIFAEMLTGKPLFAGAHELEQMQLILESVPVVREEDRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEAL  277 (342)
T ss_pred             chhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcccccCCCHHHHccCCCHHHH
Confidence            99999999999999999999996322111   11111111111 111110   00000 000000011123456788999


Q ss_pred             HHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          375 NLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       375 dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      +||.+||+.||++|||+.++|+||||+...
T Consensus       278 ~li~~~L~~dP~~R~t~~ell~h~~~~~~~  307 (342)
T cd07854         278 DFLEQILTFNPMDRLTAEEALMHPYMSCYS  307 (342)
T ss_pred             HHHHHHhCCCchhccCHHHHhCCCcccccc
Confidence            999999999999999999999999998654

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=100.00  E-value=1.9e-37  Score=331.46  Aligned_cols=269  Identities=18%  Similarity=0.195  Sum_probs=202.1

Q ss_pred             CCeE-EEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhH----------------HHHHHHHHHHHHHh
Q 005958           86 GDFK-ILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQ----------------RRGRRAIEVLKKLV  148 (667)
Q Consensus        86 ~~y~-i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~----------------~~~~rEi~iL~~L~  148 (667)
                      ++|. +.+.||.|+||    +||+|.+..     +++.||||++......                ..+.+|+++++.++
T Consensus         8 ~ry~~~~~~ig~G~~g----~vy~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~   78 (335)
T PTZ00024          8 ERYIQKGAHLGEGTYG----KVEKAYDTL-----TGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIK   78 (335)
T ss_pred             cchhhhhhcccCCCce----eEEEEEECC-----CCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCC
Confidence            5675 45779999999    999999987     7899999998653221                13578999999995


Q ss_pred             hccCCCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccc
Q 005958          149 RRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASR  228 (667)
Q Consensus       149 ~~~~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~  228 (667)
                            ||||+++++++.     ..+..++||| |+++ +|.+++....         .+++                  
T Consensus        79 ------h~~iv~~~~~~~-----~~~~~~lv~e-~~~~-~l~~~l~~~~---------~~~~------------------  118 (335)
T PTZ00024         79 ------HENIMGLVDVYV-----EGDFINLVMD-IMAS-DLKKVVDRKI---------RLTE------------------  118 (335)
T ss_pred             ------CcceeeeeEEEe-----cCCcEEEEEe-cccc-CHHHHHHhcC---------CCCH------------------
Confidence                  999999999998     7789999999 9986 9999997643         3444                  


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-----------------------C
Q 005958          229 QLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-----------------------D  285 (667)
Q Consensus       229 ~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-----------------------~  285 (667)
                        ..+..++.||+.||+|||++||+|+||||+||+++. ++.+||+|||.+.....                       .
T Consensus       119 --~~~~~~~~ql~~aL~~LH~~~i~H~dl~~~nill~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (335)
T PTZ00024        119 --SQVKCILLQILNGLNVLHKWYFMHRDLSPANIFINS-KGICKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVV  195 (335)
T ss_pred             --HHHHHHHHHHHHHHHHHHhCCeecccccHHHeEECC-CCCEEECCccceeeccccccccccccccccccccccccccc
Confidence              456789999999999999999999999999999998 89999999999876541                       1


Q ss_pred             CCCCCCcccccCCCCCCchhhHHHHHHHHHHHHhCCCCChhhh---hhhhhhhccCCChhH-HHHHHH-HHhccC-CCCC
Q 005958          286 GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIF---TKFKSFLTKGIDPSC-LREFLL-QVLNRN-SSSG  359 (667)
Q Consensus       286 ~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG~~PF~~~~---~~~~~~~~~g~~~~~-l~~~~~-~~~~~~-~~~~  359 (667)
                      .+.|+|||.+.+...++.++|||||||++|||++|.+||....   ....++...+.+... +..... ...... ....
T Consensus       196 ~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (335)
T PTZ00024        196 TLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGENEIDQLGRIFELLGTPNEDNWPQAKKLPLYTEFTPRKP  275 (335)
T ss_pred             ccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCchhhCcchhhcccccccCcCCc
Confidence            2469999987766678999999999999999999999996322   111222222222111 000000 000000 0000


Q ss_pred             CCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCCCC
Q 005958          360 NTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPRWR  406 (667)
Q Consensus       360 ~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~~~  406 (667)
                      ..........++++.+||.+||+.||++|||++|+|.||||+.....
T Consensus       276 ~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~~~~~~~~~~~  322 (335)
T PTZ00024        276 KDLKTIFPNASDDAIDLLQSLLKLNPLERISAKEALKHEYFKSDPLP  322 (335)
T ss_pred             ccHHHhCcCCChHHHHHHHHHcCCCchhccCHHHHhcCcccCCCCCC
Confidence            00011234567899999999999999999999999999999986543

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=100.00  E-value=2.9e-37  Score=318.10  Aligned_cols=245  Identities=18%  Similarity=0.231  Sum_probs=194.4

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-------hhHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-------QAQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-------~~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      .+|++.+.||+|+||    .||+|.+..     +++.||||.+...       ...+.+.+|+.+++++.      ||||
T Consensus         2 ~~~~~~~~l~~g~~g----~v~~~~~~~-----~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~------h~~i   66 (265)
T cd06652           2 TNWRLGKLLGQGAFG----RVYLCYDAD-----TGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLL------HERI   66 (265)
T ss_pred             CcceEeeEEecCCce----EEEEEEEcC-----CCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcC------CCCe
Confidence            679999999999999    999999987     7999999988531       12245688999999995      9999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      +++++++...   ....+++||| |+++|+|.+++.+..         .+++                    ..+..++.
T Consensus        67 ~~~~~~~~~~---~~~~~~~v~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~~~~~  113 (265)
T cd06652          67 VQYYGCLRDP---MERTLSIFME-HMPGGSIKDQLKSYG---------ALTE--------------------NVTRKYTR  113 (265)
T ss_pred             eeEEeEeccC---CCceEEEEEE-ecCCCcHHHHHHHcC---------CCCH--------------------HHHHHHHH
Confidence            9999998733   3567899999 999999999998654         3444                    34677999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC------------CCCCCCCcccccCCCCCCchhh
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE------------DGPNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~------------~~~~Y~APE~l~~~~~ys~ksD  306 (667)
                      |++.||.|||++||+|+||||+||+++. ++.++|+|||++.....            +...|+|||.+.+ ..++.++|
T Consensus       114 ~l~~~l~~lH~~~i~H~dl~p~nil~~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~D  191 (265)
T cd06652         114 QILEGVSYLHSNMIVHRDIKGANILRDS-VGNVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVISG-EGYGRKAD  191 (265)
T ss_pred             HHHHHHHHHHhCCEecCCCCHHHEEecC-CCCEEECcCccccccccccccccccccCCCCccccChhhhcC-CCCCcchh
Confidence            9999999999999999999999999998 89999999999875431            2246999996654 55899999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          307 MRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       307 IWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      ||||||++|||++|++||......           .   .. ........     ....+...+..+.++|.+||. +|+
T Consensus       192 v~slG~il~el~~g~~p~~~~~~~-----------~---~~-~~~~~~~~-----~~~~~~~~~~~~~~~i~~~l~-~p~  250 (265)
T cd06652         192 IWSVGCTVVEMLTEKPPWAEFEAM-----------A---AI-FKIATQPT-----NPVLPPHVSDHCRDFLKRIFV-EAK  250 (265)
T ss_pred             HHHHHHHHHHHhhCCCCCCccchH-----------H---HH-HHHhcCCC-----CCCCchhhCHHHHHHHHHHhc-Chh
Confidence            999999999999999998522111           1   11 11111100     111234567889999999995 999


Q ss_pred             CCCCHHHHHcCCCCC
Q 005958          387 KRISCLDALRHPFLC  401 (667)
Q Consensus       387 kRpSa~elL~HPwf~  401 (667)
                      +||+++|+++|||+.
T Consensus       251 ~Rp~~~~il~~~~~~  265 (265)
T cd06652         251 LRPSADELLRHTFVH  265 (265)
T ss_pred             hCCCHHHHhcCcccC
Confidence            999999999999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=100.00  E-value=7.3e-38  Score=321.60  Aligned_cols=251  Identities=19%  Similarity=0.300  Sum_probs=202.2

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ++|++.+.||.|+||    .||+|.++.     +++.||+|.+...   .....+.+|+++++.+.      ||||++++
T Consensus         1 ~~~~~~~~ig~g~~~----~v~~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~------~~~i~~~~   65 (265)
T cd06605           1 DDLEYLGELGAGNSG----VVSKVLHRP-----TGKIMAVKTIRLEINEAIQKQILRELDILHKCN------SPYIVGFY   65 (265)
T ss_pred             CcchHHHHhcCCCCe----EEEEEEEcC-----CCcEEEEEEEecccChHHHHHHHHHHHHHHHCC------CCchhhhh
Confidence            468889999999999    999999987     7899999998753   23345788999999984      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     ..+.++++|| |+++++|.+++....        ..+++                    ..+..++.|++.
T Consensus        66 ~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~~--------~~~~~--------------------~~~~~~~~~l~~  111 (265)
T cd06605          66 GAFY-----NNGDISICME-YMDGGSLDKILKEVQ--------GRIPE--------------------RILGKIAVAVLK  111 (265)
T ss_pred             eeee-----cCCEEEEEEE-ecCCCcHHHHHHHcc--------CCCCH--------------------HHHHHHHHHHHH
Confidence            9998     7789999999 999889999998642        13443                    457789999999


Q ss_pred             HHHHHHH-CCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-------CCCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          243 GVNYLHS-HGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       243 aL~yLHs-~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-------~~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      ||+|||+ .|++|+||||+||+++. ++.++|+|||.+.....       +...|+|||.+. ...++.++|||||||++
T Consensus       112 ~l~~lH~~~~i~H~dl~~~ni~~~~-~~~~~l~d~g~~~~~~~~~~~~~~~~~~y~~PE~~~-~~~~~~~~Dv~slG~~l  189 (265)
T cd06605         112 GLTYLHEKHKIIHRDVKPSNILVNS-RGQIKLCDFGVSGQLVNSLAKTFVGTSSYMAPERIQ-GNDYSVKSDIWSLGLSL  189 (265)
T ss_pred             HHHHHcCCCCeecCCCCHHHEEECC-CCCEEEeecccchhhHHHHhhcccCChhccCHHHHc-CCCCCchhhHHHHHHHH
Confidence            9999999 99999999999999999 89999999999875432       336799999654 45789999999999999


Q ss_pred             HHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCccccc-CCCHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          315 AKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILD-RNWGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       315 yemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      |+|++|..||.....          ......+.+........+.      ... .+++++++||.+||..||++|||+.+
T Consensus       190 ~~l~~g~~p~~~~~~----------~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~  253 (265)
T cd06605         190 IELATGRFPYPPEND----------PPDGIFELLQYIVNEPPPR------LPSGKFSPDFQDFVNLCLIKDPRERPSYKE  253 (265)
T ss_pred             HHHHhCCCCCCcccc----------ccccHHHHHHHHhcCCCCC------CChhhcCHHHHHHHHHHcCCCchhCcCHHH
Confidence            999999999863211          1122223333333222111      111 26889999999999999999999999


Q ss_pred             HHcCCCCCCC
Q 005958          394 ALRHPFLCGP  403 (667)
Q Consensus       394 lL~HPwf~~~  403 (667)
                      ++.||||+..
T Consensus       254 ll~~~~~~~~  263 (265)
T cd06605         254 LLEHPFIKKY  263 (265)
T ss_pred             HhhCchhhcc
Confidence            9999999763

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=100.00  E-value=1.3e-37  Score=323.74  Aligned_cols=264  Identities=19%  Similarity=0.285  Sum_probs=197.8

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ++|++.+.||+|+||    .||+|.+..     +++.||+|.++...    ..+.+.+|+++++.+.      |+||+++
T Consensus         1 ~~y~~~~~i~~g~~~----~v~~~~~~~-----~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~------~~~i~~~   65 (288)
T cd07833           1 NKYEVLGVVGEGAYG----VVLKCRNKA-----TGEIVAIKKFKESEDDEDVKKTALREVKVLRQLR------HENIVNL   65 (288)
T ss_pred             CceeEEEEecccCCe----eEEEEEeCC-----CCcEEEEehhhhhcccccchhHHHHHHHHHHhcC------CCCeeeh
Confidence            479999999999999    999999987     78999999986522    2356789999999995      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     ..+..++||| |++++.|..++.+..         .+++                    ..+..++.||+
T Consensus        66 ~~~~~-----~~~~~~iv~e-~~~~~~l~~~~~~~~---------~~~~--------------------~~~~~~~~~i~  110 (288)
T cd07833          66 KEAFR-----RKGRLYLVFE-YVERTLLELLEASPG---------GLPP--------------------DAVRSYIWQLL  110 (288)
T ss_pred             hheEE-----ECCEEEEEEe-cCCCCHHHHHHhcCC---------CCCH--------------------HHHHHHHHHHH
Confidence            99998     6788999999 999866665554422         3443                    45788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC----------CCCCCcccccCCCCCCchhhHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG----------PNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~----------~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      .||.|||++||+|+||+|+||+++. ++.+||+|||++.......          ..|+|||++.+...++.++||||||
T Consensus       111 ~~l~~LH~~~i~H~dl~~~ni~~~~-~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG  189 (288)
T cd07833         111 QAIAYCHSHNIIHRDIKPENILVSE-SGVLKLCDFGFARALRARPASPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIG  189 (288)
T ss_pred             HHHHHHHHCCeecCCCCHHHeEECC-CCCEEEEeeecccccCCCccccccCcccccCCcCCchhcCCCCcCchhhHHHHH
Confidence            9999999999999999999999998 8999999999987654432          4699999776665789999999999


Q ss_pred             HHHHHHHhCCCCChhhh---hhhhhhhccCCChhHHHHHHHH--Hhcc-C--CCCCCC--CcccccCCCHHHHHHHHHhh
Q 005958          312 FMMAKMVLRELMDPLIF---TKFKSFLTKGIDPSCLREFLLQ--VLNR-N--SSSGNT--GFQILDRNWGAGWNLLSLLL  381 (667)
Q Consensus       312 viLyemltG~~PF~~~~---~~~~~~~~~g~~~~~l~~~~~~--~~~~-~--~~~~~~--~~~~~~~~s~e~~dLI~~~L  381 (667)
                      |++|+|++|++||....   .........+..+.........  .... .  ......  .......+++++++||.+||
T Consensus       190 ~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  269 (288)
T cd07833         190 CIMAELLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNPRFAGVAFPEPSQPESLERRYPGKVSSPALDFLKACL  269 (288)
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHhhhcccCccccccccCCCCCcHHHHHhcCCccchHHHHHHHHHh
Confidence            99999999999986321   1111111111111111110000  0000 0  000000  00112234789999999999


Q ss_pred             hcCcCCCCCHHHHHcCCCC
Q 005958          382 ATKPSKRISCLDALRHPFL  400 (667)
Q Consensus       382 ~~DP~kRpSa~elL~HPwf  400 (667)
                      ..||++|||++++++||||
T Consensus       270 ~~~p~~Rps~~~il~~~~f  288 (288)
T cd07833         270 RMDPKERLTCDELLQHPYF  288 (288)
T ss_pred             ccCchhcccHHHHhcCCCC
Confidence            9999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.9e-37  Score=321.09  Aligned_cols=245  Identities=21%  Similarity=0.297  Sum_probs=199.9

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ++|++.+.||.|+||    .||+|.+..     +++.||+|.+....   ....+.+|+++++.++      ||||++++
T Consensus         1 ~~y~~~~~lg~g~~~----~v~~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~~~   65 (274)
T cd06609           1 ELFTLLECIGKGSFG----EVYKAIDKR-----TNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCR------SPYITKYY   65 (274)
T ss_pred             ChhhhhhhhcCCCCe----EEEEEEECC-----CCeEEEEEEeeccccchHHHHHHHHHHHHHHcC------CCCeeeee
Confidence            478999999999999    999999987     78999999987532   2345688999999995      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     +...+|+|+| |+++++|.+++...          .+++                    ..++.++.|++.
T Consensus        66 ~~~~-----~~~~~~~v~e-~~~~~~L~~~~~~~----------~~~~--------------------~~~~~~~~ql~~  109 (274)
T cd06609          66 GSFL-----KGSKLWIIME-YCGGGSCLDLLKPG----------KLDE--------------------TYIAFILREVLL  109 (274)
T ss_pred             EEEE-----ECCeEEEEEE-eeCCCcHHHHHhhc----------CCCH--------------------HHHHHHHHHHHH
Confidence            9998     6789999999 99999999998753          3443                    457889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      ||.|||++||+|+||+|+||+++. ++.++|+|||++......         .+.|+|||.+.+. .++.++|||||||+
T Consensus       110 ~l~~lh~~~i~h~dl~p~ni~i~~-~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~-~~~~~sDv~slG~i  187 (274)
T cd06609         110 GLEYLHEEGKIHRDIKAANILLSE-EGDVKLADFGVSGQLTSTMSKRNTFVGTPFWMAPEVIKQS-GYDEKADIWSLGIT  187 (274)
T ss_pred             HHHHHHhCCcccCCCCHHHEEECC-CCCEEEcccccceeecccccccccccCCccccChhhhccC-CCCchhhHHHHHHH
Confidence            999999999999999999999999 899999999999766533         2469999966544 48999999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccC-CCHHHHHHHHHhhhcCcCCCCCHH
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDR-NWGAGWNLLSLLLATKPSKRISCL  392 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~s~e~~dLI~~~L~~DP~kRpSa~  392 (667)
                      +|+|++|.+||....            +......   +.....+      ..... +++++.++|.+||..||++|||++
T Consensus       188 l~~l~tg~~p~~~~~------------~~~~~~~---~~~~~~~------~~~~~~~~~~~~~~l~~~l~~~p~~Rpt~~  246 (274)
T cd06609         188 AIELAKGEPPLSDLH------------PMRVLFL---IPKNNPP------SLEGNKFSKPFKDFVSLCLNKDPKERPSAK  246 (274)
T ss_pred             HHHHHhCCCCcccCc------------hHHHHHH---hhhcCCC------CCcccccCHHHHHHHHHHhhCChhhCcCHH
Confidence            999999999985221            1111111   1111111      11112 678999999999999999999999


Q ss_pred             HHHcCCCCCCCC
Q 005958          393 DALRHPFLCGPR  404 (667)
Q Consensus       393 elL~HPwf~~~~  404 (667)
                      ++++||||....
T Consensus       247 ~il~~~~~~~~~  258 (274)
T cd06609         247 ELLKHKFIKKAK  258 (274)
T ss_pred             HHhhChhhcCCC
Confidence            999999998865

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=100.00  E-value=2.6e-37  Score=321.94  Aligned_cols=250  Identities=16%  Similarity=0.179  Sum_probs=194.5

Q ss_pred             EeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEe
Q 005958           93 RVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSS  167 (667)
Q Consensus        93 ~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~  167 (667)
                      .||+|+||    .||+|.+..     +++.||+|.+....     .......|..+++.++   ..+||||+++++++. 
T Consensus         1 ~ig~g~~g----~Vy~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~-   67 (278)
T cd05606           1 IIGRGGFG----EVYGCRKAD-----TGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVS---TGDCPFIVCMSYAFH-   67 (278)
T ss_pred             CcccCCCe----EEEEEEEec-----CCCEEEEEEeeccccccchhHHHHHHHHHHHHHHH---hCCCCcEeeeeeeee-
Confidence            48999999    999999987     78999999986521     1122344544444443   126999999999998 


Q ss_pred             cccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHH
Q 005958          168 HTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYL  247 (667)
Q Consensus       168 ~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yL  247 (667)
                          ..+.+|+||| |+.+|+|.+++...+         .+++                    ..++.++.|++.||.||
T Consensus        68 ----~~~~~~~v~e-~~~g~~L~~~l~~~~---------~l~~--------------------~~~~~~~~ql~~~l~~l  113 (278)
T cd05606          68 ----TPDKLSFILD-LMNGGDLHYHLSQHG---------VFSE--------------------AEMRFYAAEIILGLEHM  113 (278)
T ss_pred             ----cCCEEEEEEe-cCCCCcHHHHHHhcC---------CCCH--------------------HHHHHHHHHHHHHHHHH
Confidence                7789999999 999999999987643         4554                    45778999999999999


Q ss_pred             HHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-------CCCCCCCcccccCCCCCCchhhHHHHHHHHHHHHhC
Q 005958          248 HSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLR  320 (667)
Q Consensus       248 Hs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG  320 (667)
                      |+++|+||||||+||+++. ++.+||+|||++..+..       +...|+|||.+.+...++.++||||+||++|+|++|
T Consensus       114 H~~~i~H~di~p~nili~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g  192 (278)
T cd05606         114 HNRFVVYRDLKPANILLDE-HGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRG  192 (278)
T ss_pred             HHCCEEcCCCCHHHEEECC-CCCEEEccCcCccccCccCCcCcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhC
Confidence            9999999999999999998 89999999999875532       336799999776665789999999999999999999


Q ss_pred             CCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC-----CHHHHH
Q 005958          321 ELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI-----SCLDAL  395 (667)
Q Consensus       321 ~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp-----Sa~elL  395 (667)
                      +.||.....         .........   ....       ....+...++++.++|.+||..||++||     ++.+++
T Consensus       193 ~~p~~~~~~---------~~~~~~~~~---~~~~-------~~~~~~~~s~~~~~li~~~l~~~p~~R~~~~~~~~~~ll  253 (278)
T cd05606         193 HSPFRQHKT---------KDKHEIDRM---TLTM-------AVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVK  253 (278)
T ss_pred             CCCCCCCCc---------cchHHHHHH---hhcc-------CCCCCCcCCHHHHHHHHHHhhcCHHhccCCCCCCHHHHH
Confidence            999853211         011111111   1100       1223345688999999999999999999     999999


Q ss_pred             cCCCCCCCCCCCCC
Q 005958          396 RHPFLCGPRWRVDP  409 (667)
Q Consensus       396 ~HPwf~~~~~~~~~  409 (667)
                      +||||.+..|....
T Consensus       254 ~~~~~~~~~~~~~~  267 (278)
T cd05606         254 EHPFFRSLDWQMVF  267 (278)
T ss_pred             hCccccCCCchHhh
Confidence            99999998865443

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-38  Score=314.89  Aligned_cols=258  Identities=16%  Similarity=0.215  Sum_probs=208.3

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh---HHHHHHHHHHHHHHhhccCCCC
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA---QRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~---~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      +.....+++.+.+..||.|+.|    +|++++++.     +|..+|||.+.+...   .+++...+.++.+..     +.
T Consensus        85 ~r~~~dindl~~l~dlGsGtcG----~V~k~~~rs-----~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~-----dc  150 (391)
T KOG0983|consen   85 QRYQADINDLENLGDLGSGTCG----QVWKMRFRS-----TGHIIAVKQMRRTGNKEENKRILMDLDVVLKSH-----DC  150 (391)
T ss_pred             cccccChHHhhhHHhhcCCCcc----ceEEEEEcc-----cceEEEEEeecccCCHHHHHHHHHhhhHHhhcc-----CC
Confidence            4455667888899999999999    999999998     899999999987433   345677888888775     68


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      |+||+.+|+|.     .+..++|.|| .|.. -+..++++-.        ..++|                    ..+-.
T Consensus       151 pyIV~c~GyFi-----~n~dV~IcMe-lMs~-C~ekLlkrik--------~piPE--------------------~ilGk  195 (391)
T KOG0983|consen  151 PYIVQCFGYFI-----TNTDVFICME-LMST-CAEKLLKRIK--------GPIPE--------------------RILGK  195 (391)
T ss_pred             CeeeeeeeEEe-----eCchHHHHHH-HHHH-HHHHHHHHhc--------CCchH--------------------Hhhhh
Confidence            99999999999     7788999999 8887 7777776532        14444                    45677


Q ss_pred             HHHHHHHHHHHHHH-CCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC--------CCCCCccccc--CCCCCCch
Q 005958          236 LMRDLLIGVNYLHS-HGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG--------PNNSSPDSNM--DRRQMMIA  304 (667)
Q Consensus       236 i~~QIl~aL~yLHs-~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~--------~~Y~APE~l~--~~~~ys~k  304 (667)
                      +...++.||.||.+ +||+|||+||+|||++. .|++||||||++-++-+..        +.|||||.+-  ....|+..
T Consensus       196 ~tva~v~AL~YLKeKH~viHRDvKPSNILlDe-~GniKlCDFGIsGrlvdSkAhtrsAGC~~YMaPERidp~~~~kYDiR  274 (391)
T KOG0983|consen  196 MTVAIVKALYYLKEKHGVIHRDVKPSNILLDE-RGNIKLCDFGISGRLVDSKAHTRSAGCAAYMAPERIDPPDKPKYDIR  274 (391)
T ss_pred             hHHHHHHHHHHHHHhcceeecccCccceEEcc-CCCEEeecccccceeecccccccccCCccccCccccCCCCCCccchh
Confidence            89999999999975 69999999999999999 9999999999997765443        7899999654  45679999


Q ss_pred             hhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          305 FDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       305 sDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      +||||||++++||+||+.||++..          ++-+    .+..++...++    .++....+|+++++|+..||++|
T Consensus       275 aDVWSlGITlveLaTg~yPy~~c~----------tdFe----~ltkvln~ePP----~L~~~~gFSp~F~~fv~~CL~kd  336 (391)
T KOG0983|consen  275 ADVWSLGITLVELATGQYPYKGCK----------TDFE----VLTKVLNEEPP----LLPGHMGFSPDFQSFVKDCLTKD  336 (391)
T ss_pred             hhhhhhccchhhhhcccCCCCCCC----------ccHH----HHHHHHhcCCC----CCCcccCcCHHHHHHHHHHhhcC
Confidence            999999999999999999986322          2222    22233333332    23333458999999999999999


Q ss_pred             cCCCCCHHHHHcCCCCCCCC
Q 005958          385 PSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       385 P~kRpSa~elL~HPwf~~~~  404 (667)
                      +.+||...++|+|||+....
T Consensus       337 ~r~RP~Y~~Ll~h~Fi~~ye  356 (391)
T KOG0983|consen  337 HRKRPKYNKLLEHPFIKRYE  356 (391)
T ss_pred             cccCcchHHHhcCcceeecc
Confidence            99999999999999998765

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=100.00  E-value=3.1e-37  Score=319.72  Aligned_cols=246  Identities=17%  Similarity=0.173  Sum_probs=192.3

Q ss_pred             cCCeEEEeEe--ccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           85 MGDFKILDRV--SIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        85 ~~~y~i~~~L--G~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      .++|++.+.+  |.|+||    .||++.++.     ++..+|+|.+......   ..|+.+...+.     +||||++++
T Consensus        13 ~~~~~~~~~~~lg~g~~g----~v~~~~~~~-----~~~~~~~k~~~~~~~~---~~e~~~~~~~~-----~h~~iv~~~   75 (267)
T PHA03390         13 LKNCEIVKKLKLIDGKFG----KVSVLKHKP-----TQKLFVQKIIKAKNFN---AIEPMVHQLMK-----DNPNFIKLY   75 (267)
T ss_pred             HHhhccccceeecCCCce----EEEEEEEcC-----CCcEEEEEEEehhhcc---hhhHHHHHHhh-----cCCCEEEEE
Confidence            3677777776  999999    999999988     7899999998653221   12444444444     699999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     ..+..|+||| |+++|+|.+++....         .+++                    ..++.++.||+.
T Consensus        76 ~~~~-----~~~~~~iv~e-~~~~~~L~~~l~~~~---------~l~~--------------------~~~~~~~~qi~~  120 (267)
T PHA03390         76 YSVT-----TLKGHVLIMD-YIKDGDLFDLLKKEG---------KLSE--------------------AEVKKIIRQLVE  120 (267)
T ss_pred             EEEe-----cCCeeEEEEE-cCCCCcHHHHHHhcC---------CCCH--------------------HHHHHHHHHHHH
Confidence            9998     6779999999 999999999998753         4554                    457889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCC-eEEEeeecccccccCC-----CCCCCCcccccCCCCCCchhhHHHHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDR-HIKVGILGNAADFYED-----GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAK  316 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~-~vKL~DFGlA~~~~~~-----~~~Y~APE~l~~~~~ys~ksDIWSLGviLye  316 (667)
                      ||.|||+.||+||||||+||+++. ++ .++|+|||++......     ...|+|||++. ...++.++||||+||++|+
T Consensus       121 ~l~~lH~~~i~H~dl~p~nil~~~-~~~~~~l~dfg~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~DvwslG~il~~  198 (267)
T PHA03390        121 ALNDLHKHNIIHNDIKLENVLYDR-AKDRIYLCDYGLCKIIGTPSCYDGTLDYFSPEKIK-GHNYDVSFDWWAVGVLTYE  198 (267)
T ss_pred             HHHHHHhCCeeeCCCCHHHEEEeC-CCCeEEEecCccceecCCCccCCCCCcccChhhhc-CCCCCchhhHHHHHHHHHH
Confidence            999999999999999999999998 55 9999999998765433     36799999654 4568999999999999999


Q ss_pred             HHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC-HHHHH
Q 005958          317 MVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS-CLDAL  395 (667)
Q Consensus       317 mltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS-a~elL  395 (667)
                      |++|..||.....          ............ ..       .....+..++.+.+||.+||+.||.+||+ ++|+|
T Consensus       199 l~~g~~p~~~~~~----------~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~l  260 (267)
T PHA03390        199 LLTGKHPFKEDED----------EELDLESLLKRQ-QK-------KLPFIKNVSKNANDFVQSMLKYNINYRLTNYNEII  260 (267)
T ss_pred             HHHCCCCCCCCCc----------chhhHHHHHHhh-cc-------cCCcccccCHHHHHHHHHHhccChhhCCchHHHHh
Confidence            9999999852110          000111111111 11       12334468899999999999999999996 59999


Q ss_pred             cCCCCCC
Q 005958          396 RHPFLCG  402 (667)
Q Consensus       396 ~HPwf~~  402 (667)
                      +||||..
T Consensus       261 ~h~~~~~  267 (267)
T PHA03390        261 KHPFLKI  267 (267)
T ss_pred             cCCcccC
Confidence            9999963

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=100.00  E-value=2.8e-37  Score=317.33  Aligned_cols=243  Identities=19%  Similarity=0.262  Sum_probs=197.0

Q ss_pred             eccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-----hhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEec
Q 005958           94 VSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSH  168 (667)
Q Consensus        94 LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~  168 (667)
                      ||.|+||    .||+|++..     +++.||+|++.+.     ...+.+.+|+.+++.+.      ||||+++++.+.  
T Consensus         1 lg~g~~~----~v~~~~~~~-----~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~~~~~~~--   63 (262)
T cd05572           1 LGVGGFG----RVELVKVKS-----KNRTFALKCVKKRHIVETGQQEHIFSEKEILEECN------HPFIVKLYRTFK--   63 (262)
T ss_pred             CCCCCce----EEEEEEECC-----CCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCC------CCCEeeeeeeEE--
Confidence            6999999    999999987     7899999998752     23356788999999994      999999999998  


Q ss_pred             ccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 005958          169 TTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLH  248 (667)
Q Consensus       169 ~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLH  248 (667)
                         ++..+++||| |+++++|.+++.+..         .+++                    ..+..++.||+.||.|||
T Consensus        64 ---~~~~~~lv~e-~~~~~~L~~~l~~~~---------~l~~--------------------~~~~~~~~~i~~~l~~lH  110 (262)
T cd05572          64 ---DKKYIYMLME-YCLGGELWTILRDRG---------LFDE--------------------YTARFYIACVVLAFEYLH  110 (262)
T ss_pred             ---cCCccEEEEe-cCCCCcHHHHHhhcC---------CCCH--------------------HHHHHHHHHHHHHHHHHh
Confidence               7789999999 999999999998753         3443                    457789999999999999


Q ss_pred             HCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHHHHHHHHHHhC
Q 005958          249 SHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLR  320 (667)
Q Consensus       249 s~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG  320 (667)
                      ++|++|+||+|+||+++. ++.++|+|||++......        .+.|+|||.+. ...++.++|+||+||++|+|++|
T Consensus       111 ~~~~~h~dl~~~nilv~~-~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~PE~~~-~~~~~~~~Di~slG~il~~l~~g  188 (262)
T cd05572         111 NRGIIYRDLKPENLLLDS-NGYVKLVDFGFAKKLKSGQKTWTFCGTPEYVAPEIIL-NKGYDFSVDYWSLGILLYELLTG  188 (262)
T ss_pred             hCCcccCCCCHHHEEEcC-CCCEEEeeCCcccccCcccccccccCCcCccChhHhc-CCCCCChhhhhhhHHHHHHHHhC
Confidence            999999999999999998 899999999999876543        36799999644 45689999999999999999999


Q ss_pred             CCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC-----HHHHH
Q 005958          321 ELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS-----CLDAL  395 (667)
Q Consensus       321 ~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS-----a~elL  395 (667)
                      .+||.....          ++..   ....+....     .....+...+++++++|.+||..||++||+     ++|++
T Consensus       189 ~~p~~~~~~----------~~~~---~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~~l~  250 (262)
T cd05572         189 RPPFGEDDE----------DPME---IYNDILKGN-----GKLEFPNYIDKAAKDLIKQLLRRNPEERLGNLKGGIKDIK  250 (262)
T ss_pred             CCCcCCCCC----------CHHH---HHHHHhccC-----CCCCCCcccCHHHHHHHHHHccCChhhCcCCcccCHHHHh
Confidence            999852210          1111   111222110     112233445789999999999999999999     99999


Q ss_pred             cCCCCCCCCCC
Q 005958          396 RHPFLCGPRWR  406 (667)
Q Consensus       396 ~HPwf~~~~~~  406 (667)
                      +||||++..|.
T Consensus       251 ~~~~~~~~~~~  261 (262)
T cd05572         251 KHKWFNGFDWE  261 (262)
T ss_pred             cChhhhCCCCC
Confidence            99999987764

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=100.00  E-value=2e-37  Score=322.12  Aligned_cols=263  Identities=25%  Similarity=0.342  Sum_probs=201.3

Q ss_pred             eEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           88 FKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        88 y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      |++.+.||.|++|    .||+|.+..     +++.||+|++....    ....+.+|+++++.++      ||||+++++
T Consensus         1 y~~~~~l~~g~~~----~vy~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~------~~~iv~~~~   65 (283)
T cd07835           1 YQKVEKIGEGTYG----VVYKARDKL-----TGEIVALKKIRLETEDEGVPSTAIREISLLKELN------HPNIVRLLD   65 (283)
T ss_pred             CchheEecCCCCe----EEEEEEEcC-----CCCEEEEEEeecccccccchhHHHHHHHHHHhcC------CCCccCHhh
Confidence            6788999999999    999999987     78999999987532    2245678999999994      999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++.     +.+..|++|| |+++ +|.+++.....       ..+++                    ..+..++.|++.|
T Consensus        66 ~~~-----~~~~~~iv~e-~~~~-~l~~~~~~~~~-------~~~~~--------------------~~~~~~~~~i~~~  111 (283)
T cd07835          66 VVH-----SENKLYLVFE-FLDL-DLKKYMDSSPL-------TGLDP--------------------PLIKSYLYQLLQG  111 (283)
T ss_pred             eec-----cCCeEEEEEe-ccCc-CHHHHHhhCCC-------CCCCH--------------------HHHHHHHHHHHHH
Confidence            998     7789999999 8875 99999876431       12343                    5678899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      |+|||++|++||||+|+||+++. ++.++|+|||++......         ...|+|||++.+...++.++|||||||++
T Consensus       112 L~~lH~~~~~H~dl~p~nil~~~-~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l  190 (283)
T cd07835         112 IAYCHSHRVLHRDLKPQNLLIDR-EGALKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIF  190 (283)
T ss_pred             HHHHHHCCeeCCCCCHHHEEEcC-CCcEEEeecccccccCCCccccCccccccCCCCCceeecCcccCcHHHHHHHHHHH
Confidence            99999999999999999999998 899999999999754321         25699999776666789999999999999


Q ss_pred             HHHHhCCCCChhhh---hhhhhhhccCCChhHHHHHHHHH---hccCCCCC-CCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          315 AKMVLRELMDPLIF---TKFKSFLTKGIDPSCLREFLLQV---LNRNSSSG-NTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       315 yemltG~~PF~~~~---~~~~~~~~~g~~~~~l~~~~~~~---~~~~~~~~-~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      |+|++|++||....   .....+...+.+...........   ........ .......+.++.++.+||.+||+.||++
T Consensus       191 ~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~  270 (283)
T cd07835         191 AEMVNRRPLFPGDSEIDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPKWARQDLSKVVPNLDEDGLDLLSKMLVYDPAK  270 (283)
T ss_pred             HHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhhhhhchhhhhhcccccccchhhhcCCCCHHHHHHHHHHhcCChhh
Confidence            99999999996322   22222222333322211111000   00000000 0011224567789999999999999999


Q ss_pred             CCCHHHHHcCCCC
Q 005958          388 RISCLDALRHPFL  400 (667)
Q Consensus       388 RpSa~elL~HPwf  400 (667)
                      |||++|+++||||
T Consensus       271 Rpt~~~il~~~~~  283 (283)
T cd07835         271 RISAKAALQHPYF  283 (283)
T ss_pred             CcCHHHHhcCCCC
Confidence            9999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=100.00  E-value=4.6e-37  Score=314.18  Aligned_cols=247  Identities=17%  Similarity=0.228  Sum_probs=197.9

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      +|++.+.||.|+||    .||+|.+..     +++.||+|.+...    ...+.+.+|+++++.++      ||||++++
T Consensus         1 ~y~~~~~lg~g~~~----~v~~~~~~~-----~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~------~~~i~~~~   65 (265)
T cd08217           1 DYEVLETIGKGSFG----TVRKVRRKS-----DGKILVWKEIDYGNMTEKEKQQLVSEVNILRELK------HPNIVRYY   65 (265)
T ss_pred             CceeeeeeccCCCe----EEEEeeecC-----CCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcC------CCccceee
Confidence            58999999999999    999999988     7899999998642    23345678999999995      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++...   .+...|++|| |+++++|.+++......     ...+++                    ..++.++.||+.
T Consensus        66 ~~~~~~---~~~~~~~~~e-~~~~~~L~~~l~~~~~~-----~~~l~~--------------------~~~~~~~~~i~~  116 (265)
T cd08217          66 DRIIDR---SNQTLYIVME-YCEGGDLAQLIQKCKKE-----RKYIEE--------------------EFIWRILTQLLL  116 (265)
T ss_pred             eeeecC---CCCEEEEEeh-hccCCCHHHHHHHHhhc-----ccCCCH--------------------HHHHHHHHHHHH
Confidence            988633   5667899999 99999999999764210     113443                    457889999999


Q ss_pred             HHHHHH-----HCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHH
Q 005958          243 GVNYLH-----SHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       243 aL~yLH-----s~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      ||.|||     +.+|+|+||||+||+++. ++.+||+|||++......         .+.|+|||.+. ...++.++|+|
T Consensus       117 ~l~~lH~~~~~~~~i~h~dl~p~nili~~-~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~pE~~~-~~~~~~~~Dv~  194 (265)
T cd08217         117 ALYECHNRSDPGNTVLHRDLKPANIFLDA-NNNVKLGDFGLAKILGHDSSFAKTYVGTPYYMSPEQLN-HMSYDEKSDIW  194 (265)
T ss_pred             HHHHHhcCccccCcceecCCCHHHEEEec-CCCEEEecccccccccCCcccccccccCCCccChhhhc-CCCCCchhHHH
Confidence            999999     999999999999999998 899999999999865432         26799999654 45589999999


Q ss_pred             HHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCC
Q 005958          309 CVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  388 (667)
Q Consensus       309 SLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kR  388 (667)
                      |||+++|+|++|..||...            ....+.+.+.   ....      .......+.++.+|+.+||..||++|
T Consensus       195 slG~il~~l~~g~~p~~~~------------~~~~~~~~~~---~~~~------~~~~~~~~~~~~~l~~~~l~~~p~~R  253 (265)
T cd08217         195 SLGCLIYELCALSPPFTAR------------NQLQLASKIK---EGKF------RRIPYRYSSELNEVIKSMLNVDPDKR  253 (265)
T ss_pred             HHHHHHHHHHHCCCcccCc------------CHHHHHHHHh---cCCC------CCCccccCHHHHHHHHHHccCCcccC
Confidence            9999999999999998521            1222222221   1111      12334677899999999999999999


Q ss_pred             CCHHHHHcCCCC
Q 005958          389 ISCLDALRHPFL  400 (667)
Q Consensus       389 pSa~elL~HPwf  400 (667)
                      |++.++++|||+
T Consensus       254 p~~~~il~~~~~  265 (265)
T cd08217         254 PSTEELLQLPLI  265 (265)
T ss_pred             CCHHHHhhCCCC
Confidence            999999999996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=100.00  E-value=1.2e-37  Score=325.00  Aligned_cols=258  Identities=16%  Similarity=0.185  Sum_probs=198.5

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      .++|+..+.||+|+||    .||++.+..     +++.||+|.+...   .....+.+|+.++.++.     +||||+++
T Consensus         3 ~~~~~~~~~lg~G~~g----~vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~-----~~~~iv~~   68 (288)
T cd06616           3 AEDLKDLGEIGRGAFG----TVNKMLHKP-----SGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSS-----DCPYIVKF   68 (288)
T ss_pred             HHHhHHHHHhCCCCce----EEEEEEECC-----CCCEEEEEEehhccChHHHHHHHHHHHHHHHhc-----CCCCEeee
Confidence            4678888999999999    999999997     7899999998753   23345688999999985     59999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     ..+..+++|| |++. +|.++......    .....+++                    ..+..++.|++
T Consensus        69 ~~~~~-----~~~~~~~~~e-~~~~-~l~~l~~~~~~----~~~~~l~~--------------------~~~~~i~~~i~  117 (288)
T cd06616          69 YGALF-----REGDCWICME-LMDI-SLDKFYKYVYE----VLKSVIPE--------------------EILGKIAVATV  117 (288)
T ss_pred             eeEEe-----cCCcEEEEEe-cccC-CHHHHHHHHHH----hhcCCCCH--------------------HHHHHHHHHHH
Confidence            99998     6778999999 9886 77665432100    00113444                    45788999999


Q ss_pred             HHHHHHHHC-CCcccCCCCCcEEEcCCCCeEEEeeecccccccC--------CCCCCCCcccccCC--CCCCchhhHHHH
Q 005958          242 IGVNYLHSH-GLAHTELRLENVHISPVDRHIKVGILGNAADFYE--------DGPNNSSPDSNMDR--RQMMIAFDMRCV  310 (667)
Q Consensus       242 ~aL~yLHs~-gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~--------~~~~Y~APE~l~~~--~~ys~ksDIWSL  310 (667)
                      .||+|||+. ||+||||||+||+++. ++.+||+|||++.....        +...|+|||.+...  ..++.++||||+
T Consensus       118 ~~l~~lh~~~~i~H~dlkp~Nil~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~sl  196 (288)
T cd06616         118 KALNYLKEELKIIHRDVKPSNILLDR-NGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSARDGYDVRSDVWSL  196 (288)
T ss_pred             HHHHHHhhcCCeeccCCCHHHEEEcc-CCcEEEeecchhHHhccCCccccccCccCccCHHHhccccccCCcchhhhhHH
Confidence            999999985 9999999999999998 88999999999875432        23579999976555  368999999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      ||++|+|++|++||.....              ..+.+........+.  ........+++++.+||.+||+.||++|||
T Consensus       197 G~il~el~~g~~p~~~~~~--------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt  260 (288)
T cd06616         197 GITLYEVATGKFPYPKWNS--------------VFDQLTQVVKGDPPI--LSNSEEREFSPSFVNFINLCLIKDESKRPK  260 (288)
T ss_pred             HHHHHHHHhCCCCchhcch--------------HHHHHhhhcCCCCCc--CCCcCCCccCHHHHHHHHHHccCChhhCcC
Confidence            9999999999999863211              111112221111111  011122457889999999999999999999


Q ss_pred             HHHHHcCCCCCCCC
Q 005958          391 CLDALRHPFLCGPR  404 (667)
Q Consensus       391 a~elL~HPwf~~~~  404 (667)
                      ++++++||||+...
T Consensus       261 ~~~i~~~~~~~~~~  274 (288)
T cd06616         261 YKELLEHPFIKDYE  274 (288)
T ss_pred             HHHHhcChhhhchh
Confidence            99999999998855

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=100.00  E-value=5.7e-37  Score=316.44  Aligned_cols=251  Identities=17%  Similarity=0.200  Sum_probs=195.7

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ..+++.....||+|+||    .||+|.+..     ++..||+|.+...  ...+.+.+|+.+++.++      |+||+++
T Consensus         6 ~~~~~~~~~~lg~g~~g----~v~~~~~~~-----~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~------h~~iv~~   70 (268)
T cd06624           6 EYDENGERVVLGKGTYG----IVYAARDLS-----TQVRIAIKEIPERDSRYVQPLHEEIALHSYLK------HRNIVQY   70 (268)
T ss_pred             ccccCCceEEEecCCce----EEEEeEecC-----CCcEEEEEEecCCCHHHHHHHHHHHHHHHhcC------CCCeeee
Confidence            33455555789999999    999999887     7899999998753  23456789999999995      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     .++..++||| |+++++|.+++....        ..+.+                  +...+..++.||+
T Consensus        71 ~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~--------~~~~~------------------~~~~~~~~~~qi~  118 (268)
T cd06624          71 LGSDS-----ENGFFKIFME-QVPGGSLSALLRSKW--------GPLKD------------------NEQTIIFYTKQIL  118 (268)
T ss_pred             eeeec-----cCCEEEEEEe-cCCCCCHHHHHHHhc--------ccCCC------------------cHHHHHHHHHHHH
Confidence            99998     7789999999 999999999997642        02210                  1245778999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCC-CCCCchhhHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDR-RQMMIAFDMRCVG  311 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~-~~ys~ksDIWSLG  311 (667)
                      .||+|||++||+||||||+||+++..++.++|+|||.+.....         +.+.|+|||.+... ..++.++||||+|
T Consensus       119 ~al~~lH~~~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slG  198 (268)
T cd06624         119 EGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLG  198 (268)
T ss_pred             HHHHHHHHCCEeecCCCHHHEEEcCCCCeEEEecchhheecccCCCccccCCCCccccChhhhccccccCCchhhhHHHH
Confidence            9999999999999999999999987567999999999875432         23679999966443 3488999999999


Q ss_pred             HHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH
Q 005958          312 FMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC  391 (667)
Q Consensus       312 viLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa  391 (667)
                      |++|+|++|++||.....          .......  ......       ........++++++|+.+||..+|++|||+
T Consensus       199 vvl~~l~~g~~p~~~~~~----------~~~~~~~--~~~~~~-------~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~  259 (268)
T cd06624         199 CTIVEMATGKPPFIELGE----------PQAAMFK--VGMFKI-------HPEIPESLSAEAKNFILRCFEPDPDKRASA  259 (268)
T ss_pred             HHHHHHHhCCCCCccccC----------hhhhHhh--hhhhcc-------CCCCCcccCHHHHHHHHHHcCCCchhCCCH
Confidence            999999999999853211          0000000  000000       112234577899999999999999999999


Q ss_pred             HHHHcCCCC
Q 005958          392 LDALRHPFL  400 (667)
Q Consensus       392 ~elL~HPwf  400 (667)
                      .|++.||||
T Consensus       260 ~~ll~~~~~  268 (268)
T cd06624         260 HDLLQDPFL  268 (268)
T ss_pred             HHHHhCCCC
Confidence            999999997

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=100.00  E-value=6e-37  Score=313.51  Aligned_cols=243  Identities=17%  Similarity=0.238  Sum_probs=197.4

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      +|++.+.||+|+||    .||++.+..     +++.||+|.+...    ...+.+.+|+.++++++      ||||++++
T Consensus         1 ~y~~~~~lg~g~~g----~~~~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~------~~~i~~~~   65 (256)
T cd08218           1 KYVKVKKIGEGSFG----KAILVKSKE-----DGKQYVIKEINISKMSPKEREESRKEVAVLSNMK------HPNIVQYQ   65 (256)
T ss_pred             CceEEEEeccCCce----EEEEEEEcC-----CCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCC------CCCeeeeE
Confidence            58999999999999    999999987     7899999998642    23346788999999994      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     ..+..++||| |+.+++|.+++.....       ..+++                    ..+..++.|++.
T Consensus        66 ~~~~-----~~~~~~lv~e-~~~~~~l~~~~~~~~~-------~~~~~--------------------~~~~~~~~~l~~  112 (256)
T cd08218          66 ESFE-----ENGNLYIVMD-YCEGGDLYKKINAQRG-------VLFPE--------------------DQILDWFVQICL  112 (256)
T ss_pred             eeec-----CCCeEEEEEe-cCCCCcHHHHHHhccC-------CCCCH--------------------HHHHHHHHHHHH
Confidence            9998     7789999999 9999999999876320       12333                    457789999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      ||.|||++|++|+||+|+||+++. ++.++|+|||++......         .+.|+|||.+. ...++.++|+|||||+
T Consensus       113 ~l~~lh~~~i~h~~l~~~nil~~~-~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~-~~~~~~~~Dv~slG~i  190 (256)
T cd08218         113 ALKHVHDRKILHRDIKSQNIFLTK-DGTIKLGDFGIARVLNSTVELARTCIGTPYYLSPEICE-NRPYNNKSDIWALGCV  190 (256)
T ss_pred             HHHHHHhCCEecCCCCHHHEEEcC-CCCEEEeeccceeecCcchhhhhhccCCccccCHHHhC-CCCCCCccchhHHHHH
Confidence            999999999999999999999998 889999999999765432         35799999654 4558899999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      +|+|++|..||..           +...    +....+.....+      +.....+.++.++|.+||+.+|++||++.+
T Consensus       191 ~~~l~~g~~~~~~-----------~~~~----~~~~~~~~~~~~------~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~  249 (256)
T cd08218         191 LYEMCTLKHAFEA-----------GNMK----NLVLKIIRGSYP------PVSSHYSYDLRNLVSQLFKRNPRDRPSVNS  249 (256)
T ss_pred             HHHHHcCCCCccC-----------CCHH----HHHHHHhcCCCC------CCcccCCHHHHHHHHHHhhCChhhCcCHHH
Confidence            9999999999842           1111    112222211111      123456789999999999999999999999


Q ss_pred             HHcCCCC
Q 005958          394 ALRHPFL  400 (667)
Q Consensus       394 lL~HPwf  400 (667)
                      +++||||
T Consensus       250 vl~~~~~  256 (256)
T cd08218         250 ILEKNFI  256 (256)
T ss_pred             HhhCcCC
Confidence            9999998

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=100.00  E-value=2.1e-37  Score=329.96  Aligned_cols=272  Identities=21%  Similarity=0.285  Sum_probs=206.8

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      +|++.+.||.|+||    .||+|++..     +++.||||++....    ..+.+.+|+.+++.+.      ||||++++
T Consensus         1 ~y~i~~~ig~g~~~----~v~~~~~~~-----~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~------~~~i~~~~   65 (330)
T cd07834           1 RYELLKPIGSGAYG----VVCSAVDKR-----TGRKVAIKKISNVFDDLIDAKRILREIKLLRHLR------HENIIGLL   65 (330)
T ss_pred             CceeeeeecCCCCe----EEEEEEeCC-----CCcEEEEEeeccccccchhhhhHHHHHHHHHhcC------Ccchhhhh
Confidence            58999999999999    999999987     78999999987532    3356788999999994      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++..........+|+||| |+++ +|.+++.+..         .+++                    ..++.++.||+.
T Consensus        66 ~~~~~~~~~~~~~~~lv~e-~~~~-~l~~~l~~~~---------~l~~--------------------~~~~~i~~~l~~  114 (330)
T cd07834          66 DILRPPSPEDFNDVYIVTE-LMET-DLHKVIKSPQ---------PLTD--------------------DHIQYFLYQILR  114 (330)
T ss_pred             hhhcccCcccccceEEEec-chhh-hHHHHHhCCC---------CCCH--------------------HHHHHHHHHHHH
Confidence            9987332223358899999 9986 9999987643         4454                    456789999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC------------CCCCCCcccccCCCCCCchhhHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED------------GPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------------~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      ||+|||++||+||||||+|||++. ++.++|+|||.+......            ...|+|||.+.+...++.++||||+
T Consensus       115 ~l~~LH~~gi~H~dlkp~nili~~-~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~sl  193 (330)
T cd07834         115 GLKYLHSANVIHRDLKPSNILVNS-NCDLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSV  193 (330)
T ss_pred             HHHHHHhCCeecCCCCHHHEEEcC-CCCEEEcccCceEeecccccccccccccccccCcCCceeeecccCCCcchhHHHH
Confidence            999999999999999999999998 899999999999865443            2469999977666578999999999


Q ss_pred             HHHHHHHHhCCCCChhhh---hhhhhhhccCCChhHHHHH-----HHHHhccCCCCC-CCCcccccCCCHHHHHHHHHhh
Q 005958          311 GFMMAKMVLRELMDPLIF---TKFKSFLTKGIDPSCLREF-----LLQVLNRNSSSG-NTGFQILDRNWGAGWNLLSLLL  381 (667)
Q Consensus       311 GviLyemltG~~PF~~~~---~~~~~~~~~g~~~~~l~~~-----~~~~~~~~~~~~-~~~~~~~~~~s~e~~dLI~~~L  381 (667)
                      ||++|+|++|.+||....   ....+....+.+.......     ............ .......+..++++.+||.+||
T Consensus       194 G~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  273 (330)
T cd07834         194 GCIFAELLTRKPLFPGRDYIDQLNLIVEVLGTPSEEDLKFITSEKARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKML  273 (330)
T ss_pred             HHHHHHHHcCCCCcCCCCHHHHHHHHHHhcCCCChhHhhhccccchhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHc
Confidence            999999999999997422   1122222233332221110     000000000000 0011223457889999999999


Q ss_pred             hcCcCCCCCHHHHHcCCCCCCCCC
Q 005958          382 ATKPSKRISCLDALRHPFLCGPRW  405 (667)
Q Consensus       382 ~~DP~kRpSa~elL~HPwf~~~~~  405 (667)
                      ++||++|||++++++||||++...
T Consensus       274 ~~~P~~Rpt~~~ll~~~~~~~~~~  297 (330)
T cd07834         274 VFDPKKRITADEALAHPYLAQLHD  297 (330)
T ss_pred             cCChhhCCCHHHHHhCccHHhhcc
Confidence            999999999999999999988653

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=100.00  E-value=3.2e-37  Score=314.80  Aligned_cols=243  Identities=20%  Similarity=0.259  Sum_probs=196.7

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-------hHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-------AQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-------~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      +|+..+.||+|+||    .||+|.+..     +++.||+|.+....       ..+.+.+|+++++.++      |+||+
T Consensus         1 ~~~~~~~ig~g~~~----~vy~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~------h~~i~   65 (258)
T cd06632           1 RWRKGELLGSGSFG----SVYEGLNLD-----DGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQ------HPNIV   65 (258)
T ss_pred             CccccceeeecCCc----eEEEEEEcC-----CCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcC------CCCch
Confidence            47788999999999    999999987     78999999986532       3356788999999994      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++.     ....++++|| |+++++|.+++.+..         .+++                    ..+..++.|
T Consensus        66 ~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~~---------~~~~--------------------~~~~~~~~~  110 (258)
T cd06632          66 QYLGTER-----EEDNLYIFLE-LVPGGSLAKLLKKYG---------SFPE--------------------PVIRLYTRQ  110 (258)
T ss_pred             heeeeEe-----cCCeEEEEEE-ecCCCcHHHHHHhcC---------CCCH--------------------HHHHHHHHH
Confidence            9999998     7789999999 999999999998643         3443                    456779999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      |+.||.|||+.||+|+||+|+||+++. ++.+||+|||++......        ...|+|||.+.....++.++|+||||
T Consensus       111 i~~~l~~lH~~~i~H~dl~~~ni~~~~-~~~~kl~d~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG  189 (258)
T cd06632         111 ILLGLEYLHDRNTVHRDIKGANILVDT-NGVVKLADFGMAKQVVEFSFAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLG  189 (258)
T ss_pred             HHHHHHHHHHCCcccCCCCHHHEEECC-CCCEEEccCccceeccccccccccCCCcceeCHHHhcCCCCCCchhhhHHHH
Confidence            999999999999999999999999998 899999999998754322        35699999665444589999999999


Q ss_pred             HHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH
Q 005958          312 FMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC  391 (667)
Q Consensus       312 viLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa  391 (667)
                      |++|+|++|++||.....           ......    ....     .........+++++++||.+||..||++||++
T Consensus       190 ~~l~~l~~g~~pf~~~~~-----------~~~~~~----~~~~-----~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~  249 (258)
T cd06632         190 CTVLEMATGKPPWSQLEG-----------VAAVFK----IGRS-----KELPPIPDHLSDEAKDFILKCLQRDPSLRPTA  249 (258)
T ss_pred             HHHHHHHhCCCCcccCcH-----------HHHHHH----HHhc-----ccCCCcCCCcCHHHHHHHHHHhhcCcccCcCH
Confidence            999999999999853211           011111    1000     00112234578899999999999999999999


Q ss_pred             HHHHcCCCC
Q 005958          392 LDALRHPFL  400 (667)
Q Consensus       392 ~elL~HPwf  400 (667)
                      .+++.|||+
T Consensus       250 ~~~l~~~~~  258 (258)
T cd06632         250 AELLEHPFV  258 (258)
T ss_pred             HHHhcCCCC
Confidence            999999996

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=100.00  E-value=2.5e-37  Score=325.06  Aligned_cols=270  Identities=23%  Similarity=0.309  Sum_probs=199.0

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      +++|++.+.||.|+||    .||+|.+..     +++.||||++....    ......+|+++++.++      ||||++
T Consensus         7 ~~~y~~~~~lg~g~~~----~v~~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~   71 (311)
T cd07866           7 LRDYEILGKLGEGTFG----EVYKARQIK-----TGRVVALKKILMHNEKDGFPITALREIKILKKLK------HPNVVP   71 (311)
T ss_pred             cccEEEEEEeccCCCE----EEEEEEECC-----CCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcC------CCCccc
Confidence            6899999999999999    999999987     78999999986422    1235678999999995      999999


Q ss_pred             EEEEEEeccc---CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          161 VHGYVSSHTT---SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       161 l~~~~~~~~~---~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      +++++.....   .....+++||| |+++ +|...+....        ..+++                    ..++.++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~lv~~-~~~~-~l~~~~~~~~--------~~~~~--------------------~~~~~i~  121 (311)
T cd07866          72 LIDMAVERPDKSKRKRGSVYMVTP-YMDH-DLSGLLENPS--------VKLTE--------------------SQIKCYM  121 (311)
T ss_pred             hhhheecccccccccCceEEEEEe-cCCc-CHHHHHhccc--------cCCCH--------------------HHHHHHH
Confidence            9998763211   13457899999 9887 8888776532        13444                    5678899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------------------CCCCCCcccccC
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------------------GPNNSSPDSNMD  297 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------------------~~~Y~APE~l~~  297 (667)
                      .||++||+|||++||+|+||||+||+++. ++.+||+|||++......                    .+.|+|||.+.+
T Consensus       122 ~~l~~al~~lH~~~i~H~dl~p~nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  200 (311)
T cd07866         122 LQLLEGINYLHENHILHRDIKAANILIDN-QGILKIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLG  200 (311)
T ss_pred             HHHHHHHHHHHhCCeecCCCCHHHEEECC-CCCEEECcCccchhccCCCcccccCCcccccccccceeccCcCChHHhhC
Confidence            99999999999999999999999999998 899999999999755322                    245999997766


Q ss_pred             CCCCCchhhHHHHHHHHHHHHhCCCCChhhhh---hhhhhhccCCChhHHHHHHHHHhccC-----CCCCCCCcccccCC
Q 005958          298 RRQMMIAFDMRCVGFMMAKMVLRELMDPLIFT---KFKSFLTKGIDPSCLREFLLQVLNRN-----SSSGNTGFQILDRN  369 (667)
Q Consensus       298 ~~~ys~ksDIWSLGviLyemltG~~PF~~~~~---~~~~~~~~g~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~  369 (667)
                      ...++.++|||||||++|||++|++||.+...   ...++...+.+...............     ..............
T Consensus       201 ~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (311)
T cd07866         201 ERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLHLIFKLCGTPTEETWPGWRSLPGCEGVHSFTNYPRTLEERFGKL  280 (311)
T ss_pred             CCccCchhHhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhchhhhhcccccccccCCCCCccHHHHcccC
Confidence            66789999999999999999999999963211   11122222222111100000000000     00000000112345


Q ss_pred             CHHHHHHHHHhhhcCcCCCCCHHHHHcCCCC
Q 005958          370 WGAGWNLLSLLLATKPSKRISCLDALRHPFL  400 (667)
Q Consensus       370 s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf  400 (667)
                      ++++.+||.+||+.||++|||+.+++.||||
T Consensus       281 ~~~~~~~i~~~l~~~p~~R~t~~ell~~~~f  311 (311)
T cd07866         281 GPEGLDLLSKLLSLDPYKRLTASDALEHPYF  311 (311)
T ss_pred             ChhHHHHHHHHcccCcccCcCHHHHhcCCCC
Confidence            5789999999999999999999999999998

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=100.00  E-value=5.4e-37  Score=314.25  Aligned_cols=249  Identities=18%  Similarity=0.276  Sum_probs=204.1

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ++|++.+.||.|++|    .||+|.+..     +++.||+|++....   ....+.+|+.++.+++      |+||++++
T Consensus         1 ~~~~~~~~i~~g~~~----~v~~~~~~~-----~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~------~~~i~~~~   65 (264)
T cd06623           1 SDLERVKVLGQGSSG----VVYKVRHKP-----TGKIYALKKIHVDGDEEFRKQLLRELKTLRSCE------SPYVVKCY   65 (264)
T ss_pred             CcceeeeeeeecCCe----EEEEEEEcC-----CCcEEEEEEeccCcchHHHHHHHHHHHHHHhcC------CCCeeeEE
Confidence            479999999999999    999999998     79999999987643   3466789999999995      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     ..+..++||| |+++++|.+++....         .+++                    ..+..++.||+.
T Consensus        66 ~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~l~~--------------------~~~~~~~~~l~~  110 (264)
T cd06623          66 GAFY-----KEGEISIVLE-YMDGGSLADLLKKVG---------KIPE--------------------PVLAYIARQILK  110 (264)
T ss_pred             EEEc-----cCCeEEEEEE-ecCCCcHHHHHHHcC---------CCCH--------------------HHHHHHHHHHHH
Confidence            9998     7789999999 999999999998653         4444                    457789999999


Q ss_pred             HHHHHHH-CCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHH
Q 005958          243 GVNYLHS-HGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       243 aL~yLHs-~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      ||+|||+ +|++|+||+|+||+++. ++.++|+|||.+......         ...|+|||.+ ....++.++|+||||+
T Consensus       111 ~l~~lh~~~~~~H~~l~~~ni~~~~-~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~~pE~~-~~~~~~~~~Dv~slG~  188 (264)
T cd06623         111 GLDYLHTKRHIIHRDIKPSNLLINS-KGEVKIADFGISKVLENTLDQCNTFVGTVTYMSPERI-QGESYSYAADIWSLGL  188 (264)
T ss_pred             HHHHHhccCCCccCCCCHHHEEECC-CCCEEEccCccceecccCCCcccceeecccccCHhhh-CCCCCCchhhHHHHHH
Confidence            9999999 99999999999999998 899999999999865432         2579999954 4457899999999999


Q ss_pred             HHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccC-CCHHHHHHHHHhhhcCcCCCCCH
Q 005958          313 MMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDR-NWGAGWNLLSLLLATKPSKRISC  391 (667)
Q Consensus       313 iLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~s~e~~dLI~~~L~~DP~kRpSa  391 (667)
                      ++|+|++|.+||.....            ....+....+.....+      ..... ++..+.++|.+||..+|++||++
T Consensus       189 il~~l~tg~~p~~~~~~------------~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~li~~~l~~~p~~R~~~  250 (264)
T cd06623         189 TLLECALGKFPFLPPGQ------------PSFFELMQAICDGPPP------SLPAEEFSPEFRDFISACLQKDPKKRPSA  250 (264)
T ss_pred             HHHHHHhCCCCCccccc------------cCHHHHHHHHhcCCCC------CCCcccCCHHHHHHHHHHccCChhhCCCH
Confidence            99999999999853321            0112222222221111      12233 67899999999999999999999


Q ss_pred             HHHHcCCCCCCCC
Q 005958          392 LDALRHPFLCGPR  404 (667)
Q Consensus       392 ~elL~HPwf~~~~  404 (667)
                      .++++||||+..+
T Consensus       251 ~~ll~~~~~~~~~  263 (264)
T cd06623         251 AELLQHPFIKKAD  263 (264)
T ss_pred             HHHHhCHHHHhcc
Confidence            9999999997654

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=3.6e-37  Score=318.42  Aligned_cols=245  Identities=14%  Similarity=0.097  Sum_probs=193.6

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      +...+|++.+.||+|+||    .||+|.++...  ..+..||+|.++...   ....+.+|+.++++++      ||||+
T Consensus         2 i~~~~~~~~~~ig~G~fg----~V~~~~~~~~~--~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~------h~~iv   69 (266)
T cd05064           2 LDNKSIKIERILGTGRFG----ELCRGCLKLPS--KRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFD------HSNIV   69 (266)
T ss_pred             CchHHeEEeeeecccCCC----eEEEEEEecCC--CceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCC------CCCcC
Confidence            345789999999999999    99999876421  256899999987632   2345688999999984      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++.     ..+..++||| |+++|+|.+++....        ..+++                    ..++.++.|
T Consensus        70 ~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~--------~~l~~--------------------~~~~~~~~~  115 (266)
T cd05064          70 RLEGVIT-----RGNTMMIVTE-YMSNGALDSFLRKHE--------GQLVA--------------------GQLMGMLPG  115 (266)
T ss_pred             eEEEEEe-----cCCCcEEEEE-eCCCCcHHHHHHhCC--------CCCCH--------------------HHHHHHHHH
Confidence            9999998     7788999999 999999999997642        13443                    457889999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC----------CCCCCCcccccCCCCCCchhhHHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED----------GPNNSSPDSNMDRRQMMIAFDMRC  309 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~----------~~~Y~APE~l~~~~~ys~ksDIWS  309 (667)
                      |+.||+|||++||+||||||+|||++. ++.+|++|||.+......          ...|+|||.+. ...++.++||||
T Consensus       116 i~~al~~lH~~~iiH~dikp~nili~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~s  193 (266)
T cd05064         116 LASGMKYLSEMGYVHKGLAAHKVLVNS-DLVCKISGFRRLQEDKSEAIYTTMSGKSPVLWAAPEAIQ-YHHFSSASDVWS  193 (266)
T ss_pred             HHHHHHHHHHCCEeeccccHhhEEEcC-CCcEEECCCcccccccccchhcccCCCCceeecCHHHHh-hCCccchhHHHH
Confidence            999999999999999999999999998 899999999987643221          24699999554 456899999999


Q ss_pred             HHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCC
Q 005958          310 VGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  388 (667)
Q Consensus       310 LGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kR  388 (667)
                      |||++|||++ |.+||...            ......+.+...         ...+....++..+.+++.+||+.||++|
T Consensus       194 lG~~l~ell~~g~~p~~~~------------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~li~~c~~~~p~~R  252 (266)
T cd05064         194 FGIVMWEVMSYGERPYWDM------------SGQDVIKAVEDG---------FRLPAPRNCPNLLHQLMLDCWQKERGER  252 (266)
T ss_pred             HHHHHHHHhcCCCCCcCcC------------CHHHHHHHHHCC---------CCCCCCCCCCHHHHHHHHHHcCCCchhC
Confidence            9999999775 99998532            222222222111         1122345677899999999999999999


Q ss_pred             CCHHHHHc
Q 005958          389 ISCLDALR  396 (667)
Q Consensus       389 pSa~elL~  396 (667)
                      |+++++++
T Consensus       253 P~~~~i~~  260 (266)
T cd05064         253 PRFSQIHS  260 (266)
T ss_pred             CCHHHHHH
Confidence            99999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-39  Score=347.75  Aligned_cols=272  Identities=20%  Similarity=0.210  Sum_probs=214.3

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      .|.-++.||.|+||    .||-|++..     +.+.||||++.-..     .-.++..|+..|++++      |||+|.+
T Consensus        27 lf~dLrEIGHGSFG----AVYfArd~~-----n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~------HPntieY   91 (948)
T KOG0577|consen   27 LFSDLREIGHGSFG----AVYFARDVR-----NSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLR------HPNTIEY   91 (948)
T ss_pred             HHHHHHHhcCCccc----eeEEeeccC-----ccceeeeeeccccccccHHHHHHHHHHHHHHHhcc------CCCcccc
Confidence            47778999999999    999999998     89999999997422     2256789999999995      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      .++|.     .+...|+||| ||-| +-.|++.-++.        +|-|                    ..|..|+.+.+
T Consensus        92 kgCyL-----re~TaWLVME-YClG-SAsDlleVhkK--------plqE--------------------vEIAAi~~gaL  136 (948)
T KOG0577|consen   92 KGCYL-----REHTAWLVME-YCLG-SASDLLEVHKK--------PLQE--------------------VEIAAITHGAL  136 (948)
T ss_pred             cceee-----ccchHHHHHH-HHhc-cHHHHHHHHhc--------cchH--------------------HHHHHHHHHHH
Confidence            99999     8889999999 9988 88888876541        3444                    56888999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-----CCCCCCCccccc--CCCCCCchhhHHHHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-----DGPNNSSPDSNM--DRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-----~~~~Y~APE~l~--~~~~ys~ksDIWSLGviL  314 (667)
                      .||+|||+++.||||||..|||+++ .|.|||+|||.|....+     +.|+|||||+++  +.+.|+-++||||||++.
T Consensus       137 ~gLaYLHS~~~IHRDiKAGNILLse-~g~VKLaDFGSAsi~~PAnsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITC  215 (948)
T KOG0577|consen  137 QGLAYLHSHNRIHRDIKAGNILLSE-PGLVKLADFGSASIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITC  215 (948)
T ss_pred             HHHHHHHHhhHHhhhccccceEecC-CCeeeeccccchhhcCchhcccCCccccchhHheeccccccCCccceeeccchh
Confidence            9999999999999999999999999 99999999999986654     349999999876  677899999999999999


Q ss_pred             HHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHH
Q 005958          315 AKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDA  394 (667)
Q Consensus       315 yemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~el  394 (667)
                      .||.-++||.-....+...           ..+    -...+|.     -....+|..+++|+..||++-|.+|||++++
T Consensus       216 IELAERkPPlFnMNAMSAL-----------YHI----AQNesPt-----Lqs~eWS~~F~~Fvd~CLqKipqeRptse~l  275 (948)
T KOG0577|consen  216 IELAERKPPLFNMNAMSAL-----------YHI----AQNESPT-----LQSNEWSDYFRNFVDSCLQKIPQERPTSEEL  275 (948)
T ss_pred             hhhhhcCCCccCchHHHHH-----------HHH----HhcCCCC-----CCCchhHHHHHHHHHHHHhhCcccCCcHHHH
Confidence            9999999996433222222           111    1111110     0124567899999999999999999999999


Q ss_pred             HcCCCCCCCCCCCCCchhhhhccCCCchhhchhhhhcC
Q 005958          395 LRHPFLCGPRWRVDPSIDMIRWGLGSSAVRITEEYIYR  432 (667)
Q Consensus       395 L~HPwf~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~  432 (667)
                      |.|+|+...+.... .++++..  -+.+++-.+++.|+
T Consensus       276 l~H~fv~R~Rp~tv-i~dLIqR--TKdaVrELDNlqYr  310 (948)
T KOG0577|consen  276 LKHRFVLRERPPTV-IMDLIQR--TKDAVRELDNLQYR  310 (948)
T ss_pred             hhcchhccCCCchH-HHHHHHH--HHHHHHHhhhhhHH
Confidence            99999987663222 2333321  23344445555443

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=6.2e-37  Score=316.54  Aligned_cols=247  Identities=19%  Similarity=0.244  Sum_probs=195.3

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh------------hHHHHHHHHHHHHHHhhccCCC
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ------------AQRRGRRAIEVLKKLVRRRLMY  154 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~------------~~~~~~rEi~iL~~L~~~~~~~  154 (667)
                      +|.+.+.||.|+||    .||+|.+..     +++.||+|.+....            ..+.+.+|+.+++.++      
T Consensus         2 ~~~~~~~lg~g~~~----~vy~~~~~~-----~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~------   66 (272)
T cd06629           2 KWVKGELIGKGTYG----RVYLALNVT-----TGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLD------   66 (272)
T ss_pred             ceeecceecccCce----EEEEEeecC-----CCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcC------
Confidence            58899999999999    999999987     78999999886311            1134578999999994      


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      ||||+++++++.     ..+..++||| |+.+|+|.+++.+.+         .+++                    ..++
T Consensus        67 h~~i~~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~l~~--------------------~~~~  111 (272)
T cd06629          67 HLNIVQYLGFET-----TEEYLSIFLE-YVPGGSIGSCLRTYG---------RFEE--------------------QLVR  111 (272)
T ss_pred             CCCcceEEEEec-----cCCceEEEEe-cCCCCcHHHHHhhcc---------CCCH--------------------HHHH
Confidence            999999999998     7789999999 999999999998753         4444                    4567


Q ss_pred             HHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-----------CCCCCCCcccccCCC-CCC
Q 005958          235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-----------DGPNNSSPDSNMDRR-QMM  302 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-----------~~~~Y~APE~l~~~~-~ys  302 (667)
                      .++.||+.||.|||++|++||||+|+||+++. ++.++|+|||++.....           +...|+|||.+.... .++
T Consensus       112 ~~~~qi~~~l~~lH~~~i~H~dl~~~nil~~~-~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~  190 (272)
T cd06629         112 FFTEQVLEGLAYLHSKGILHRDLKADNLLVDA-DGICKISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIHSYSQGYS  190 (272)
T ss_pred             HHHHHHHHHHHHHhhCCeeecCCChhhEEEcC-CCeEEEeeccccccccccccccccccccCCccccCHHHhccccCCCC
Confidence            79999999999999999999999999999998 89999999999975432           225699999765443 478


Q ss_pred             chhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhh
Q 005958          303 IAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLA  382 (667)
Q Consensus       303 ~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~  382 (667)
                      .++|+||||+++|+|++|..||........           ..+.    ...... ..........++.++++||.+||.
T Consensus       191 ~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~-----------~~~~----~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~  254 (272)
T cd06629         191 AKVDIWSLGCVVLEMFAGRRPWSDEEAIAA-----------MFKL----GNKRSA-PPIPPDVSMNLSPVALDFLNACFT  254 (272)
T ss_pred             ccchhHHHHHHHHHHHhCCCCCcCcchHHH-----------HHHh----hccccC-CcCCccccccCCHHHHHHHHHHhc
Confidence            999999999999999999999853221111           1111    000000 000011234567899999999999


Q ss_pred             cCcCCCCCHHHHHcCCCC
Q 005958          383 TKPSKRISCLDALRHPFL  400 (667)
Q Consensus       383 ~DP~kRpSa~elL~HPwf  400 (667)
                      +||++|||++++|+||||
T Consensus       255 ~~p~~Rps~~~il~~~~~  272 (272)
T cd06629         255 INPDNRPTARELLQHPFI  272 (272)
T ss_pred             CChhhCCCHHHHhhCCCC
Confidence            999999999999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=100.00  E-value=1.5e-36  Score=310.46  Aligned_cols=243  Identities=16%  Similarity=0.242  Sum_probs=197.6

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      +|++.+.||.|+||    .||.+++..     +++.+|+|.+...    .....+.+|+++++++      +|+||++++
T Consensus         1 ~y~~~~~ig~g~~g----~v~~~~~~~-----~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~------~h~~i~~~~   65 (256)
T cd08221           1 HYIPIRVLGKGAFG----EATLYRRTE-----DDSLVVWKEVNLTRLSEKERRDALNEIVILSLL------QHPNIIAYY   65 (256)
T ss_pred             CceEeeEecccCCc----eEEEEEEcC-----CCcEEEEEEEeecccchhHHHHHHHHHHHHHhC------CCCCeeEEE
Confidence            59999999999999    999999987     7899999987642    2334568999999999      499999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     +.+.++++|| |+++|+|.+++....       ...+++                    ..+..++.|++.
T Consensus        66 ~~~~-----~~~~~~~~~e-~~~~~~L~~~~~~~~-------~~~~~~--------------------~~~~~~~~~l~~  112 (256)
T cd08221          66 NHFM-----DDNTLLIEME-YANGGTLYDKIVRQK-------GQLFEE--------------------EMVLWYLFQIVS  112 (256)
T ss_pred             eEEe-----cCCeEEEEEE-ecCCCcHHHHHHhcc-------ccCCCH--------------------HHHHHHHHHHHH
Confidence            9998     7789999999 999999999998642       113443                    457789999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      ||.|||+.|++|+||||+||+++. ++.+||+|||++......         .+.|+|||.+.+ ..++.++|||||||+
T Consensus       113 ~l~~lh~~~i~h~dl~p~ni~~~~-~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~slG~i  190 (256)
T cd08221         113 AVSYIHKAGILHRDIKTLNIFLTK-AGLIKLGDFGISKILGSEYSMAETVVGTPYYMSPELCQG-VKYNFKSDIWALGCV  190 (256)
T ss_pred             HHHHHHhCCccccCCChHhEEEeC-CCCEEECcCcceEEcccccccccccCCCccccCHhhcCC-CCCCCcchhHHHHHH
Confidence            999999999999999999999998 889999999998765332         367999996544 458899999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      +|||++|..||..            .....   ....+......      +.....+.++.++|.+||..||++||++.+
T Consensus       191 ~~~l~~g~~~~~~------------~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~i~~~l~~~p~~R~s~~~  249 (256)
T cd08221         191 LYELLTLKRTFDA------------TNPLN---LVVKIVQGNYT------PVVSVYSSELISLVHSLLQQDPEKRPTADE  249 (256)
T ss_pred             HHHHHHCCCCCCC------------CCHHH---HHHHHHcCCCC------CCccccCHHHHHHHHHHcccCcccCCCHHH
Confidence            9999999999852            11111   11112111111      112456789999999999999999999999


Q ss_pred             HHcCCCC
Q 005958          394 ALRHPFL  400 (667)
Q Consensus       394 lL~HPwf  400 (667)
                      +|+|||+
T Consensus       250 ll~~~~l  256 (256)
T cd08221         250 VLDQPLL  256 (256)
T ss_pred             HhhCcCC
Confidence            9999996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=6.2e-37  Score=315.58  Aligned_cols=244  Identities=17%  Similarity=0.219  Sum_probs=196.6

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ++...+|++.+.||+|+||    .||+|.+..     +++.||+|.+.... ....+.+|+++++.++      ||||++
T Consensus         2 ~~~~~~~~~~~~ig~g~~~----~v~~~~~~~-----~~~~~~~K~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~   66 (263)
T cd05052           2 EMERTDITMKHKLGGGQYG----EVYEGVWKK-----YSLTVAVKTLKEDTMEVEEFLKEAAVMKEIK------HPNLVQ   66 (263)
T ss_pred             CCchHHeEEeeecCCcccc----eEEEEEEec-----CCceEEEEEecCCchHHHHHHHHHHHHHhCC------CCChhh
Confidence            3455789999999999999    999999987     78999999987533 2345788999999994      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     ..+.+++||| |+++|+|.+++.....       ..+++                    ..+..++.|+
T Consensus        67 ~~~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~~~-------~~l~~--------------------~~~~~~~~ql  113 (263)
T cd05052          67 LLGVCT-----REPPFYIITE-FMTYGNLLDYLRECNR-------QEVNA--------------------VVLLYMATQI  113 (263)
T ss_pred             eEEEEc-----CCCCcEEEEE-eCCCCcHHHHHHhCCC-------CCCCH--------------------HHHHHHHHHH
Confidence            999998     7788999999 9999999999976421       12333                    4567899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC----------CCCCCcccccCCCCCCchhhHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG----------PNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~----------~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      +.||+|||++||+||||||+||+++. ++.+||+|||++.......          ..|+|||.+ ....++.++|||||
T Consensus       114 ~~~l~~lH~~~i~H~dlkp~nil~~~-~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Dv~sl  191 (263)
T cd05052         114 SSAMEYLEKKNFIHRDLAARNCLVGE-NHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESL-AYNKFSIKSDVWAF  191 (263)
T ss_pred             HHHHHHHHhCCEeecccCcceEEEcC-CCcEEeCCCccccccccceeeccCCCCCccccCCHHHh-ccCCCCchhHHHHH
Confidence            99999999999999999999999998 8999999999997654331          359999955 44568999999999


Q ss_pred             HHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          311 GFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       311 GviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      ||++|||++ |.+||+.            .........+....         .......+++++.+||.+||..||++||
T Consensus       192 G~il~el~t~g~~p~~~------------~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~li~~cl~~~p~~Rp  250 (263)
T cd05052         192 GVLLWEIATYGMSPYPG------------IDLSQVYELLEKGY---------RMERPEGCPPKVYELMRACWQWNPSDRP  250 (263)
T ss_pred             HHHHHHHHcCCCCCCCC------------CCHHHHHHHHHCCC---------CCCCCCCCCHHHHHHHHHHccCCcccCC
Confidence            999999998 9999852            22222222221111         1123345788999999999999999999


Q ss_pred             CHHHHHc
Q 005958          390 SCLDALR  396 (667)
Q Consensus       390 Sa~elL~  396 (667)
                      |+.++++
T Consensus       251 ~~~~l~~  257 (263)
T cd05052         251 SFAEIHQ  257 (263)
T ss_pred             CHHHHHH
Confidence            9999875

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=100.00  E-value=9.7e-37  Score=327.91  Aligned_cols=272  Identities=20%  Similarity=0.293  Sum_probs=205.4

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      .++|++.+.||+|+||    .||+|.+..     +++.||||++...    .....+.+|+.+|+.++      ||||++
T Consensus        14 ~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~------h~~iv~   78 (343)
T cd07880          14 PDRYRDLKQVGSGAYG----TVCSALDRR-----TGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMK------HENVIG   78 (343)
T ss_pred             ccceEEEEEeeecCCe----EEEEEEECC-----CCcEEEEEEecccccchHHHHHHHHHHHHHHhcC------CCCccc
Confidence            4789999999999999    999999987     7899999998642    12345678999999995      999999


Q ss_pred             EEEEEEeccc-CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          161 VHGYVSSHTT-SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       161 l~~~~~~~~~-~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      +++++..... .....+++||| |+++ +|.+++...          .+++                    ..++.++.|
T Consensus        79 ~~~~~~~~~~~~~~~~~~lv~e-~~~~-~l~~~~~~~----------~l~~--------------------~~~~~i~~q  126 (343)
T cd07880          79 LLDVFTPDLSLDRFHDFYLVMP-FMGT-DLGKLMKHE----------KLSE--------------------DRIQFLVYQ  126 (343)
T ss_pred             eeeeecCCccccccceEEEEEe-cCCC-CHHHHHhcC----------CCCH--------------------HHHHHHHHH
Confidence            9999873311 11235799999 9855 999888642          3444                    457889999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      |+.||.|||++||+||||||+||+++. ++.+||+|||++......      .+.|+|||.+.+...++.++|+||+||+
T Consensus       127 i~~al~~LH~~gi~H~dlkp~Nill~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~l  205 (343)
T cd07880         127 MLKGLKYIHAAGIIHRDLKPGNLAVNE-DCELKILDFGLARQTDSEMTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCI  205 (343)
T ss_pred             HHHHHHHHHhCCeecCCCCHHHEEEcC-CCCEEEeecccccccccCccccccCCcccCHHHHhCCCCCCcHHHHHHHHHH
Confidence            999999999999999999999999998 899999999999765433      3679999977665568999999999999


Q ss_pred             HHHHHhCCCCChhhh---hhhhhhhccCCChhHHHHHHH-----HHhccCCCCCCCC-cccccCCCHHHHHHHHHhhhcC
Q 005958          314 MAKMVLRELMDPLIF---TKFKSFLTKGIDPSCLREFLL-----QVLNRNSSSGNTG-FQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       314 LyemltG~~PF~~~~---~~~~~~~~~g~~~~~l~~~~~-----~~~~~~~~~~~~~-~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      +|+|++|.+||....   ....+....+..+..+.+.+.     ......+...... ....+..++++.++|.+||+.|
T Consensus       206 l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~d  285 (343)
T cd07880         206 MAEMLTGKPLFKGHDHLDQLMEIMKVTGTPSKEFVQKLQSEDAKNYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLD  285 (343)
T ss_pred             HHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhcchhHHHHHHhccccCcchHHHhccCCChHHHHHHHHHcCCC
Confidence            999999999997432   222222223333322222211     0001111111111 1234567889999999999999


Q ss_pred             cCCCCCHHHHHcCCCCCCCC
Q 005958          385 PSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       385 P~kRpSa~elL~HPwf~~~~  404 (667)
                      |++|||+.+++.||||+...
T Consensus       286 P~~R~t~~~~l~~~~~~~~~  305 (343)
T cd07880         286 AESRITAAEALAHPYFEEFH  305 (343)
T ss_pred             hhhCCCHHHHhcCccHhhhc
Confidence            99999999999999998764

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.8e-37  Score=319.98  Aligned_cols=249  Identities=14%  Similarity=0.216  Sum_probs=199.7

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      .|++.+.||.|+||    .||+|.+..     +++.||+|.+...   .....+.+|+.+++.+.+   ..||||+++++
T Consensus         2 ~y~~~~~l~~g~~g----~v~~~~~~~-----~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~---~~~~~vi~~~~   69 (277)
T cd06917           2 LYQRLELIGRGAYG----AVYRGKHVP-----TGRVVALKIINLDTPDDDVSDIQREVALLSQLRQ---SQPPNITKYYG   69 (277)
T ss_pred             hhhhhhheeccCCc----eEEEEEEcC-----CCcEEEEEEecCCCCchhHHHHHHHHHHHHHhcc---CCCCCeeeEee
Confidence            58889999999999    999999987     7899999998642   223457889999999842   24999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++.     .+...|+||| |+++++|.+++...          .+++                    ..+..++.|++.|
T Consensus        70 ~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~----------~l~~--------------------~~~~~i~~~i~~~  113 (277)
T cd06917          70 SYL-----KGPRLWIIME-YAEGGSVRTLMKAG----------PIAE--------------------KYISVIIREVLVA  113 (277)
T ss_pred             eee-----eCCEEEEEEe-cCCCCcHHHHHHcc----------CCCH--------------------HHHHHHHHHHHHH
Confidence            998     7789999999 99999999998653          3443                    4567899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC---------CCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG---------PNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~---------~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      |.|||+.||+|+||+|+||+++. ++.++|+|||++.......         ..|+|||.+.+...++.++|+|||||++
T Consensus       114 l~~lh~~~i~H~dl~p~ni~i~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l  192 (277)
T cd06917         114 LKYIHKVGVIHRDIKAANILVTN-TGNVKLCDFGVAALLNQNSSKRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITI  192 (277)
T ss_pred             HHHHHhCCcccCCcCHHHEEEcC-CCCEEEccCCceeecCCCccccccccCCcceeCHHHhccCCccccchhHHHHHHHH
Confidence            99999999999999999999998 8999999999997654332         4699999776666789999999999999


Q ss_pred             HHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHH
Q 005958          315 AKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDA  394 (667)
Q Consensus       315 yemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~el  394 (667)
                      |+|++|.+||.....            ......   ......+    .+ .....+.++.+||.+||+.||++||++.++
T Consensus       193 ~~ll~g~~p~~~~~~------------~~~~~~---~~~~~~~----~~-~~~~~~~~~~~~i~~~l~~~p~~R~~~~~i  252 (277)
T cd06917         193 YEMATGNPPYSDVDA------------FRAMML---IPKSKPP----RL-EDNGYSKLLREFVAACLDEEPKERLSAEEL  252 (277)
T ss_pred             HHHHhCCCCCCCCCh------------hhhhhc---cccCCCC----CC-CcccCCHHHHHHHHHHcCCCcccCcCHHHH
Confidence            999999999853211            111110   0000000    00 011267899999999999999999999999


Q ss_pred             HcCCCCCCCC
Q 005958          395 LRHPFLCGPR  404 (667)
Q Consensus       395 L~HPwf~~~~  404 (667)
                      +.||||++..
T Consensus       253 l~~~~~~~~~  262 (277)
T cd06917         253 LKSKWIKAHS  262 (277)
T ss_pred             hhChHhhccc
Confidence            9999998765

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=100.00  E-value=8.1e-37  Score=312.02  Aligned_cols=244  Identities=17%  Similarity=0.256  Sum_probs=196.6

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      +|++.+.||.|+||    .||+|.++.     ++..||+|.+...    ...+.+.+|+++++.++      |+||++++
T Consensus         1 ~~~~~~~l~~g~~~----~v~~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~------h~~i~~~~   65 (257)
T cd08225           1 RYEIIKKIGEGSFG----KIYLAKAKS-----DSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMK------HPNIVTFF   65 (257)
T ss_pred             CceEEEEecCCCcc----eEEEEEEcC-----CCceEEEEEeeHhhccchhhHHHHHHHHHHHhCC------CCChhhhh
Confidence            58999999999999    999999998     7899999998753    23345689999999995      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +.+.     ..+..++|+| |+.+++|.+++....       ...+++                    ..+..++.|++.
T Consensus        66 ~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~~-------~~~~~~--------------------~~~~~~~~~l~~  112 (257)
T cd08225          66 ASFQ-----ENGRLFIVME-YCDGGDLMKRINRQR-------GVLFSE--------------------DQILSWFVQISL  112 (257)
T ss_pred             heec-----cCCeEEEEEe-cCCCCcHHHHHHhcc-------CCCCCH--------------------HHHHHHHHHHHH
Confidence            9998     7789999999 999999999997642       112343                    457789999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      ||.|||++||+|+||||+||+++.++..+||+|||.+......         .+.|+|||.+. ...++.++|+|||||+
T Consensus       113 ~l~~lh~~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ape~~~-~~~~~~~~Dv~slG~i  191 (257)
T cd08225         113 GLKHIHDRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMELAYTCVGTPYYLSPEICQ-NRPYNNKTDIWSLGCV  191 (257)
T ss_pred             HHHHHHHCCcccccCCHHHEEEcCCCCeEEecccccchhccCCcccccccCCCccccCHHHHc-CCCCCchhhHHHHHHH
Confidence            9999999999999999999999984456799999998765432         25699999544 4468899999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      +|||++|..||...            ...   +.+........      .+..+..+.++.++|.+||..+|++|||+.+
T Consensus       192 l~~l~~g~~p~~~~------------~~~---~~~~~~~~~~~------~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~  250 (257)
T cd08225         192 LYELCTLKHPFEGN------------NLH---QLVLKICQGYF------APISPNFSRDLRSLISQLFKVSPRDRPSITS  250 (257)
T ss_pred             HHHHHhCCCCCCCc------------cHH---HHHHHHhcccC------CCCCCCCCHHHHHHHHHHhccChhhCcCHHH
Confidence            99999999998521            111   11111211111      1123456789999999999999999999999


Q ss_pred             HHcCCCC
Q 005958          394 ALRHPFL  400 (667)
Q Consensus       394 lL~HPwf  400 (667)
                      +++||||
T Consensus       251 ll~~~~~  257 (257)
T cd08225         251 ILKRPFL  257 (257)
T ss_pred             HhhCCCC
Confidence            9999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=100.00  E-value=8.7e-37  Score=316.87  Aligned_cols=257  Identities=17%  Similarity=0.201  Sum_probs=195.5

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      +..++|++.+.||+|+||    .||+|.+.......++..||+|++....   ....+.+|+.+++.+      +||||+
T Consensus         3 ~~~~~~~~~~~ig~G~~g----~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l------~~~~iv   72 (277)
T cd05062           3 VAREKITMSRELGQGSFG----MVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEF------NCHHVV   72 (277)
T ss_pred             ccHHHceeeeeeccccCC----eEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhC------CCCCee
Confidence            345789999999999999    9999998643222356889999986422   234567899999998      499999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++.     .....++||| |+++|+|.+++........  .                 ......+....+..++.|
T Consensus        73 ~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~~~~~~--~-----------------~~~~~~~~~~~~~~~~~~  127 (277)
T cd05062          73 RLLGVVS-----QGQPTLVIME-LMTRGDLKSYLRSLRPEME--N-----------------NPVQAPPSLKKMIQMAGE  127 (277)
T ss_pred             eEEEEEc-----CCCCeEEEEe-cCCCCCHHHHHHHcCcccc--c-----------------cccccCCCHHHHHHHHHH
Confidence            9999997     7788999999 9999999999976431100  0                 000112234567889999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhhHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      ++.||.|||+.|++||||||+||+++. ++.++|+|||++......           ...|+|||.+. ...++.++|||
T Consensus       128 l~~~l~~lH~~~~vH~dlkp~Nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~  205 (277)
T cd05062         128 IADGMAYLNANKFVHRDLAARNCMVAE-DFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLK-DGVFTTYSDVW  205 (277)
T ss_pred             HHHHHHHHHHCCcccCCcchheEEEcC-CCCEEECCCCCccccCCcceeecCCCCccCHhhcChhHhh-cCCcCchhHHH
Confidence            999999999999999999999999998 899999999998754221           24699999654 45689999999


Q ss_pred             HHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          309 CVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       309 SLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      ||||++|||++ |.+||.+            .......+.+.   ....      .......++.+.+||.+||+.||++
T Consensus       206 slG~~l~el~~~~~~p~~~------------~~~~~~~~~~~---~~~~------~~~~~~~~~~~~~li~~~l~~~p~~  264 (277)
T cd05062         206 SFGVVLWEIATLAEQPYQG------------MSNEQVLRFVM---EGGL------LDKPDNCPDMLFELMRMCWQYNPKM  264 (277)
T ss_pred             HHHHHHHHHHcCCCCCCCC------------CCHHHHHHHHH---cCCc------CCCCCCCCHHHHHHHHHHcCCChhh
Confidence            99999999998 7888742            22222222211   1110      1123456789999999999999999


Q ss_pred             CCCHHHHHcC
Q 005958          388 RISCLDALRH  397 (667)
Q Consensus       388 RpSa~elL~H  397 (667)
                      |||+.|++++
T Consensus       265 Rps~~e~l~~  274 (277)
T cd05062         265 RPSFLEIISS  274 (277)
T ss_pred             CcCHHHHHHH
Confidence            9999999864

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=100.00  E-value=1.4e-36  Score=324.75  Aligned_cols=271  Identities=19%  Similarity=0.264  Sum_probs=204.5

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCC--CcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLH--NTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t--g~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      +|++.+.||+|+||    .||+|.+..     +  +..||+|.+...    ...+...+|+++++++.     +||||++
T Consensus         1 ~y~~~~~lg~G~~g----~vy~~~~~~-----~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~~iv~   66 (332)
T cd07857           1 RYELIKELGQGAYG----IVCSARNAE-----TSEEETVAIKKITNVFSKKILAKRALRELKLLRHFR-----GHKNITC   66 (332)
T ss_pred             CceEEEEccccCCe----EEEEEEeCC-----CCcCceEEEEEeccccccchhHHHHHHHHHHHHHhc-----CCCChhe
Confidence            58999999999999    999999987     5  889999998642    12345678999999996     6999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++...... .....+|++|| |+++ +|.+++....         .+++                    ..++.++.||
T Consensus        67 ~~~~~~~~~-~~~~~~~~~~e-~~~~-~L~~~l~~~~---------~~~~--------------------~~~~~~~~qi  114 (332)
T cd07857          67 LYDMDIVFP-GNFNELYLYEE-LMEA-DLHQIIRSGQ---------PLTD--------------------AHFQSFIYQI  114 (332)
T ss_pred             eeeeeeecc-ccCCcEEEEEe-cccC-CHHHHHhcCC---------CCCH--------------------HHHHHHHHHH
Confidence            999764221 13456899999 8886 9999987643         4554                    4567899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-------------CCCCCCCcccccCCCCCCchhhH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-------------DGPNNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-------------~~~~Y~APE~l~~~~~ys~ksDI  307 (667)
                      +.||.|||++||+||||||+|||++. ++.+||+|||++..+..             +...|+|||.+.+...++.++||
T Consensus       115 ~~aL~~LH~~givH~dlkp~Nili~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di  193 (332)
T cd07857         115 LCGLKYIHSANVLHRDLKPGNLLVNA-DCELKICDFGLARGFSENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDV  193 (332)
T ss_pred             HHHHHHHHhCCcccCCCCHHHeEEcC-CCCEEeCcCCCceecccccccccccccCcccCccccCcHHHhCCCCCCcHHHH
Confidence            99999999999999999999999998 89999999999975432             22569999977666678999999


Q ss_pred             HHHHHHHHHHHhCCCCChhh---hhhhhhhhccCCChhHHHHHHHH-----HhccCCCCCCCCc-ccccCCCHHHHHHHH
Q 005958          308 RCVGFMMAKMVLRELMDPLI---FTKFKSFLTKGIDPSCLREFLLQ-----VLNRNSSSGNTGF-QILDRNWGAGWNLLS  378 (667)
Q Consensus       308 WSLGviLyemltG~~PF~~~---~~~~~~~~~~g~~~~~l~~~~~~-----~~~~~~~~~~~~~-~~~~~~s~e~~dLI~  378 (667)
                      ||+||++|+|++|.+||...   ..........|.++......+..     ............+ ...+..+.++++||.
T Consensus       194 ~slGv~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  273 (332)
T cd07857         194 WSVGCILAELLGRKPVFKGKDYVDQLNQILQVLGTPDEETLSRIGSPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLE  273 (332)
T ss_pred             HHHHHHHHHHHhCCcCCCCCCHHHHHHHHHHHhCCCCHHHHHhhhhhhHHHHHHhccccCCcchHhhCCCCCHHHHHHHH
Confidence            99999999999999999742   22333333444444322111100     0000000000111 123456889999999


Q ss_pred             HhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          379 LLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       379 ~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      +||+.||++|||+.+++.||||....
T Consensus       274 ~~l~~~P~~R~t~~~ll~~~~~~~~~  299 (332)
T cd07857         274 KLLAFDPTKRISVEEALEHPYLAIWH  299 (332)
T ss_pred             HHccCCcccCCCHHHHhcChhhhhhc
Confidence            99999999999999999999997654

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=5.7e-38  Score=308.60  Aligned_cols=259  Identities=15%  Similarity=0.121  Sum_probs=203.9

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCCC
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      ....++.++|.+.+.||+|+|+    -||++.+..     +++.||+|++...  +..+.+++|++..+++      +||
T Consensus        14 ~tv~In~~Ryri~~~LgeGGfs----fv~LV~~~s-----~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf------~s~   78 (302)
T KOG2345|consen   14 GTVIINNKRYRIQRLLGEGGFS----FVDLVKGLS-----TGHLYALKKILCHSQEDIEEALREIDNHRKF------NSP   78 (302)
T ss_pred             CcEEEcCceEEEeeeecCCCce----eeeeecccC-----cccchhhheeeccchHHHHHHHHHHHHHHhh------CCc
Confidence            4556778999999999999999    999999887     8999999998753  4556789999999999      599


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||++++++......+.....||+++ |+..|+|.+.|.......     -.++|                    .++..|
T Consensus        79 ~vl~l~dh~l~~~~D~~~~~yll~P-yy~~Gsl~d~i~~~k~kg-----~~~sE--------------------~~iL~i  132 (302)
T KOG2345|consen   79 NVLRLVDHQLREEKDGKHEAYLLLP-YYKRGSLLDEIERLKIKG-----NFVSE--------------------AQILWI  132 (302)
T ss_pred             chHHHHHHHHHhhccCceeEEEEee-hhccccHHHHHHHHhhcC-----CccCH--------------------HHHHHH
Confidence            9999999876444446677999999 777779999998754211     14554                    568889


Q ss_pred             HHHHHHHHHHHHHCC--CcccCCCCCcEEEcCCCCeEEEeeecccccccCC------------------CCCCCCccccc
Q 005958          237 MRDLLIGVNYLHSHG--LAHTELRLENVHISPVDRHIKVGILGNAADFYED------------------GPNNSSPDSNM  296 (667)
Q Consensus       237 ~~QIl~aL~yLHs~g--IvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------------------~~~Y~APE~l~  296 (667)
                      +.+|++||++||+..  ++||||||.|||+++ .+.++|.|||.+......                  +..|+|||++-
T Consensus       133 f~gic~gL~~lH~~~~~yAH~DiKP~NILls~-~~~~vl~D~GS~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~  211 (302)
T KOG2345|consen  133 FLGICRGLEALHEKEPPYAHRDIKPANILLSD-SGLPVLMDLGSATQAPIQIEGSRQALRLQEWAEERCTIPYRAPELFN  211 (302)
T ss_pred             HHHHHHHHHHHhccCCcccccCCCcceeEecC-CCceEEEeccCccccceEeechHHHHHHHHHHHHhCCCcccCchhee
Confidence            999999999999999  999999999999998 899999999999754321                  16799999543


Q ss_pred             --CCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHH
Q 005958          297 --DRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGW  374 (667)
Q Consensus       297 --~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~  374 (667)
                        .....+.++|||||||+||+|+.|..||....+       .|..-.           -........++....+|+.+.
T Consensus       212 vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~-------~GgSla-----------LAv~n~q~s~P~~~~yse~l~  273 (302)
T KOG2345|consen  212 VKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQ-------QGGSLA-----------LAVQNAQISIPNSSRYSEALH  273 (302)
T ss_pred             cccCcccccccchhhhhHHHHHHHHcCCcchHHhh-------cCCeEE-----------EeeeccccccCCCCCccHHHH
Confidence              233468899999999999999999999963322       121110           000011122333445889999


Q ss_pred             HHHHHhhhcCcCCCCCHHHHHcC
Q 005958          375 NLLSLLLATKPSKRISCLDALRH  397 (667)
Q Consensus       375 dLI~~~L~~DP~kRpSa~elL~H  397 (667)
                      +||+.||+.||.+||++.+++.+
T Consensus       274 ~lik~mlqvdP~qRP~i~~ll~~  296 (302)
T KOG2345|consen  274 QLIKSMLQVDPNQRPTIPELLSK  296 (302)
T ss_pred             HHHHHHhcCCcccCCCHHHHHHH
Confidence            99999999999999999999874

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=100.00  E-value=4.9e-37  Score=319.05  Aligned_cols=246  Identities=17%  Similarity=0.204  Sum_probs=195.0

Q ss_pred             eccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEec
Q 005958           94 VSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSH  168 (667)
Q Consensus        94 LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~  168 (667)
                      ||+|+||    +||+|.+..     +++.||+|.+....     ......+|+++++.++      ||||+++++++.  
T Consensus         1 lg~g~~g----~vy~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~------~~~i~~~~~~~~--   63 (277)
T cd05577           1 LGKGGFG----EVCACQVKA-----TGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVS------SRFIVSLAYAFE--   63 (277)
T ss_pred             CCCCCce----eEEEEEEcC-----CCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCC------CCCEeeeeeEEe--
Confidence            6899999    999999987     78999999986522     2234468999999994      999999999998  


Q ss_pred             ccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 005958          169 TTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLH  248 (667)
Q Consensus       169 ~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLH  248 (667)
                         ..+..|+||| |+++++|.+++.....       ..+++                    ..+..++.|++.||.|||
T Consensus        64 ---~~~~~~lv~e-~~~~~~L~~~l~~~~~-------~~~~~--------------------~~~~~~~~ql~~~l~~lH  112 (277)
T cd05577          64 ---TKDDLCLVMT-LMNGGDLKYHIYNVGE-------PGFPE--------------------ARAIFYAAQIICGLEHLH  112 (277)
T ss_pred             ---cCCeEEEEEe-cCCCCcHHHHHHHcCc-------CCCCH--------------------HHHHHHHHHHHHHHHHHH
Confidence               7789999999 9999999999976431       13444                    456779999999999999


Q ss_pred             HCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC--------CCCCCCCcccccCCCCCCchhhHHHHHHHHHHHHhC
Q 005958          249 SHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE--------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLR  320 (667)
Q Consensus       249 s~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~--------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG  320 (667)
                      ++||+||||+|+||+++. ++.+||+|||.+.....        +...|+|||.+.+. .++.++||||+||++|+|++|
T Consensus       113 ~~~i~H~di~p~Nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~y~~PE~~~~~-~~~~~~Di~slG~il~~l~~g  190 (277)
T cd05577         113 QRRIVYRDLKPENVLLDD-HGNVRISDLGLAVELKGGKKIKGRAGTPGYMAPEVLQGE-VYDFSVDWFALGCTLYEMIAG  190 (277)
T ss_pred             hCCcccCCCCHHHEEECC-CCCEEEccCcchhhhccCCccccccCCCCcCCHHHhcCC-CCCchhhhHHHHHHHHHHhhC
Confidence            999999999999999998 89999999999875542        22579999965544 489999999999999999999


Q ss_pred             CCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC-----CHHHHH
Q 005958          321 ELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI-----SCLDAL  395 (667)
Q Consensus       321 ~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp-----Sa~elL  395 (667)
                      +.||......           ............       .........++++.+||.+||+.||++||     ++.+++
T Consensus       191 ~~p~~~~~~~-----------~~~~~~~~~~~~-------~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~ll  252 (277)
T cd05577         191 RSPFRQRKEK-----------VEKEELKRRTLE-------MAVEYPDKFSPEAKDLCEALLQKDPEKRLGCRGGSADEVR  252 (277)
T ss_pred             CCCCCCCccc-----------ccHHHHHhcccc-------ccccCCccCCHHHHHHHHHHccCChhHccCCCcccHHHHH
Confidence            9998532110           001111111111       11223345688999999999999999999     899999


Q ss_pred             cCCCCCCCCCCC
Q 005958          396 RHPFLCGPRWRV  407 (667)
Q Consensus       396 ~HPwf~~~~~~~  407 (667)
                      +||||...+|+.
T Consensus       253 ~h~~~~~~~~~~  264 (277)
T cd05577         253 EHPLFKDLNWRR  264 (277)
T ss_pred             hChhhhcCChhh
Confidence            999999887643

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=100.00  E-value=3e-37  Score=352.10  Aligned_cols=305  Identities=23%  Similarity=0.318  Sum_probs=198.1

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      ...+..++|++.+.||+|+||    .||+|++..... ..+..||+|++......     |+.+..++++.   .+.++.
T Consensus       126 ~~~~~~~~y~l~~~LG~G~FG----~VYka~~~~~~~-~~~~~vAvK~~~~~~~~-----e~~~~e~l~~~---~~~~~~  192 (566)
T PLN03225        126 RPSFKKDDFVLGKKLGEGAFG----VVYKASLVNKQS-KKEGKYVLKKATEYGAV-----EIWMNERVRRA---CPNSCA  192 (566)
T ss_pred             CCCCccCCeEEeEEEeeCCCe----EEEEEEEcCCcc-ccCcEEEEEEecccchh-----HHHHHHHHHhh---chhhHH
Confidence            345677999999999999999    999999987100 11899999998653222     22222222110   133333


Q ss_pred             EEEEEEEecc-cCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          160 QVHGYVSSHT-TSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       160 ~l~~~~~~~~-~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      .+...+.... ......+++||| |+++++|.+++........+..       ....  ...............++.++.
T Consensus       193 ~~~~~~~~~~~~~~~~~~~LV~e-y~~~gsL~~~l~~~~~~~~v~~-------~l~~--~~~~l~~~~~r~~~~i~~i~~  262 (566)
T PLN03225        193 DFVYGFLEPVSSKKEDEYWLVWR-YEGESTLADLMQSKEFPYNVEP-------YLLG--KVQDLPKGLERENKIIQTIMR  262 (566)
T ss_pred             HHHHhhhcccccccCCceEEEEE-ecCCCcHHHHHHhcCCchhHHH-------Hhcc--chhhccccchhhHHHHHHHHH
Confidence            3322222111 126678999999 9999999999986542111110       0000  000000111222356788999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC----------CCCCCCcccccCCC---------
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED----------GPNNSSPDSNMDRR---------  299 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~----------~~~Y~APE~l~~~~---------  299 (667)
                      ||+.||.|||++||+||||||+|||++.+++.+||+|||+|+.+...          .+.|+|||.+....         
T Consensus       263 qll~aL~yLH~~gIiHRDLKP~NILl~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~  342 (566)
T PLN03225        263 QILFALDGLHSTGIVHRDVKPQNIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAP  342 (566)
T ss_pred             HHHHHHHHHHHCCEEeCcCCHHHEEEeCCCCcEEEEeCCCccccccccccCCcccccCCCccChHHhhccCCCCCCcccc
Confidence            99999999999999999999999999974689999999999765322          36899999553221         


Q ss_pred             ------------CCCchhhHHHHHHHHHHHHhCCCCChh-hhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccc
Q 005958          300 ------------QMMIAFDMRCVGFMMAKMVLRELMDPL-IFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQIL  366 (667)
Q Consensus       300 ------------~ys~ksDIWSLGviLyemltG~~PF~~-~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~  366 (667)
                                  .++.++||||+||++|||+++..++.. ..+....+...+.+...+......   ...+.....+...
T Consensus       343 ~~~~~sp~l~~~~~~~k~DVwSlGviL~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  419 (566)
T PLN03225        343 VATALSPVLWQLNLPDRFDIYSAGLIFLQMAFPNLRSDSNLIQFNRQLKRNDYDLVAWRKLVEP---RASPDLRRGFEVL  419 (566)
T ss_pred             ccccccchhccccCCCCcccHHHHHHHHHHHhCcCCCchHHHHHHHHHHhcCCcHHHHHHhhcc---ccchhhhhhhhhc
Confidence                        245577999999999999998766553 223333333344443333332211   1111112223444


Q ss_pred             cCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCCCCCCCc
Q 005958          367 DRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPRWRVDPS  410 (667)
Q Consensus       367 ~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~~~~~~~  410 (667)
                      +....+++|||.+||++||++|||+.|+|+||||++..+.....
T Consensus       420 d~~~~~~~dLi~~mL~~dP~kR~ta~e~L~Hpff~~~~~~~~~~  463 (566)
T PLN03225        420 DLDGGAGWELLKSMMRFKGRQRISAKAALAHPYFDREGLLGLSV  463 (566)
T ss_pred             cccchHHHHHHHHHccCCcccCCCHHHHhCCcCcCCCCcccccc
Confidence            45566788999999999999999999999999999987654433

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.3e-39  Score=320.21  Aligned_cols=275  Identities=21%  Similarity=0.272  Sum_probs=210.3

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      ..+.|+-..+||+|.||    .||+|+.+.     +++.||+|++....    -.....+|+.+|..|+      |+|++
T Consensus        15 ~~~~yek~~kigqGtfg----eVFkAr~~n-----~~kkvalkkvlmeneKeGfpitalreikiL~~lk------Henv~   79 (376)
T KOG0669|consen   15 EVSKYEKLAKIGQGTFG----EVFKARSKN-----TGKKVALKKVLMENEKEGFPITALREIKILQLLK------HENVV   79 (376)
T ss_pred             cchHHHHHHhcCCchHH----HHHHHhhcC-----ccchhHHHHHHHhccccCCcHHHHHHHHHHHHhc------chhHH
Confidence            45778899999999999    999999998     89999998865422    2245689999999996      99999


Q ss_pred             EEEEEEEecc---cCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          160 QVHGYVSSHT---TSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       160 ~l~~~~~~~~---~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      .+++.+....   ..+...+|+||. +|+. ||.-++....                            ..+++..|+.+
T Consensus        80 nliEic~tk~Tp~~r~r~t~ylVf~-~ceh-DLaGlLsn~~----------------------------vr~sls~Ikk~  129 (376)
T KOG0669|consen   80 NLIEICRTKATPTNRDRATFYLVFD-FCEH-DLAGLLSNRK----------------------------VRFSLSEIKKV  129 (376)
T ss_pred             HHHHHHhhccCCcccccceeeeeHH-Hhhh-hHHHHhcCcc----------------------------ccccHHHHHHH
Confidence            9888775332   234557999999 9999 9999987642                            23346789999


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-------------CCCCCcccccCCCCCCc
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-------------PNNSSPDSNMDRRQMMI  303 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-------------~~Y~APE~l~~~~~ys~  303 (667)
                      +.+++.||.|+|.+.|+|||+||+|+||+. +|.+||+|||+|+.+....             ..|++||.+++.+.|++
T Consensus       130 Mk~Lm~GL~~iHr~kilHRDmKaaNvLIt~-dgilklADFGlar~fs~~~n~~kprytnrvvTLwYrppEllLG~r~yg~  208 (376)
T KOG0669|consen  130 MKGLMNGLYYIHRNKILHRDMKAANVLITK-DGILKLADFGLARAFSTSKNVVKPRYTNRVVTLWYRPPELLLGDREYGP  208 (376)
T ss_pred             HHHHHHHHHHHHHhhHHhhcccHhhEEEcC-CceEEeeccccccceecccccCCCCcccceeeeecCCHHHhhcccccCC
Confidence            999999999999999999999999999999 9999999999998765432             35889999999999999


Q ss_pred             hhhHHHHHHHHHHHHhCCCCChh---hhhhhhhhhccCCChh-HHH-----HHHHHHhccCCCCCC-CCcc---cccCCC
Q 005958          304 AFDMRCVGFMMAKMVLRELMDPL---IFTKFKSFLTKGIDPS-CLR-----EFLLQVLNRNSSSGN-TGFQ---ILDRNW  370 (667)
Q Consensus       304 ksDIWSLGviLyemltG~~PF~~---~~~~~~~~~~~g~~~~-~l~-----~~~~~~~~~~~~~~~-~~~~---~~~~~s  370 (667)
                      +.|||..|||+.||++|.+.|++   ..++.-+-..+|.-.. .++     +....+-..+.+... ..++   .+-.-+
T Consensus       209 ~iDiWgAgCimaeMwtrspimqgnteqqql~~Is~LcGs~tkevWP~~d~lpL~~sie~ePl~~~~~rkv~n~~kp~~kd  288 (376)
T KOG0669|consen  209 PIDIWGAGCIMAEMWTRSPIMQGNTEQQQLHLISQLCGSITKEVWPNVDNLPLYQSIELEPLPKGQKRKVKNRLKPYVKD  288 (376)
T ss_pred             cchhHhHHHHHHHHHccCccccCChHHHHHHHHHHHhccCCcccCCCcccchHHHhccCCCCCcchhhhhhhhcccccCC
Confidence            99999999999999999999984   2333333334443221 111     111111111111110 0010   011235


Q ss_pred             HHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          371 GAGWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       371 ~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      +++.||+.+||..||.+|+.++++|+|.||....
T Consensus       289 ~~a~dLle~ll~~DP~kR~~ad~alnh~~F~kdp  322 (376)
T KOG0669|consen  289 DEALDLLEKLLKLDPTKRIDADQALNHDFFWKDP  322 (376)
T ss_pred             hhHHHHHHHHhccCcccCcchHhhhchhhhhcCC
Confidence            6899999999999999999999999999998755

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=100.00  E-value=3.2e-37  Score=316.21  Aligned_cols=243  Identities=17%  Similarity=0.241  Sum_probs=198.3

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-----hhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      +|++.+.||.|+||    .||+|.+..     +++.||+|++...     ...+.+.+|+++++++      +||||+++
T Consensus         1 ~y~~~~~i~~g~~~----~v~~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~   65 (258)
T cd05578           1 HFELLRVIGKGAFG----KVCIVQKRD-----TKKMFAMKYMNKQKCVEKGSVRNVLNERRILQEL------NHPFLVNL   65 (258)
T ss_pred             CceEEEEeccCCCc----eEEEEEEcc-----CCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhC------CCCChHHH
Confidence            58999999999999    999999987     7899999999753     2345678899999999      49999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++.+.     +....++||| |+.+++|.+++....         .+++                    ..+..++.||+
T Consensus        66 ~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~l~~--------------------~~~~~~~~~i~  110 (258)
T cd05578          66 WYSFQ-----DEENMYLVVD-LLLGGDLRYHLSQKV---------KFSE--------------------EQVKFWICEIV  110 (258)
T ss_pred             HHhhc-----CCCeEEEEEe-CCCCCCHHHHHHhcC---------CcCH--------------------HHHHHHHHHHH
Confidence            99998     7889999999 999999999998643         3444                    45778999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      .||.|||++||+|+||+|+||+++. ++.++|+|||.+......        ...|+|||.+. ...++.++|+|||||+
T Consensus       111 ~~l~~lh~~~i~h~dl~~~nil~~~-~~~~~l~d~~~~~~~~~~~~~~~~~~~~~y~~PE~~~-~~~~~~~~Di~slG~~  188 (258)
T cd05578         111 LALEYLHSKGIIHRDIKPDNILLDE-QGHVHITDFNIATKVTPDTLTTSTSGTPGYMAPEVLC-RQGYSVAVDWWSLGVT  188 (258)
T ss_pred             HHHHHHHhCCeeccCCCHHHeEEcC-CCCEEEeecccccccCCCccccccCCChhhcCHHHHc-ccCCCCcccchhhHHH
Confidence            9999999999999999999999998 899999999998765443        25799999554 4458999999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH--
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC--  391 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa--  391 (667)
                      +|+|++|..||....            .......... ...      .........+.++.++|.+||..||.+||++  
T Consensus       189 l~~l~~g~~p~~~~~------------~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~  249 (258)
T cd05578         189 AYECLRGKRPYRGHS------------RTIRDQIRAK-QET------ADVLYPATWSTEAIDAINKLLERDPQKRLGDNL  249 (258)
T ss_pred             HHHHHhCCCCCCCCC------------ccHHHHHHHH-hcc------ccccCcccCcHHHHHHHHHHccCChhHcCCccH
Confidence            999999999985221            1011111111 110      0112334567899999999999999999999  


Q ss_pred             HHHHcCCCC
Q 005958          392 LDALRHPFL  400 (667)
Q Consensus       392 ~elL~HPwf  400 (667)
                      .|+++||||
T Consensus       250 ~~l~~~~~~  258 (258)
T cd05578         250 KDLKNHPYF  258 (258)
T ss_pred             HHHhcCCCC
Confidence            999999998

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=100.00  E-value=4.8e-37  Score=318.40  Aligned_cols=259  Identities=17%  Similarity=0.178  Sum_probs=198.7

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ..++|.+.+.||+|+||    .||+|.+.......+++.||||.++...   ..+.+.+|+++|+.+.      ||||++
T Consensus         3 ~~~~~~~~~~lg~g~~~----~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~------~~~i~~   72 (280)
T cd05049           3 QRDTIVLKRELGEGAFG----KVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQ------HENIVK   72 (280)
T ss_pred             ChHHhhHHhhccccCCc----eEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcC------CCCchh
Confidence            35779999999999999    9999998653223357899999987532   2356789999999995      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     .....++||| |+++|+|.+++...+.....     +.          ........++...+..++.||
T Consensus        73 ~~~~~~-----~~~~~~lv~e-~~~~~~L~~~i~~~~~~~~~-----~~----------~~~~~~~~l~~~~~~~~~~~i  131 (280)
T cd05049          73 FYGVCT-----EGDPPIMVFE-YMEHGDLNKFLRSHGPDAAF-----LK----------SPDSPMGELTLSQLLQIAVQI  131 (280)
T ss_pred             eeeEEe-----cCCCeEEEEe-cCCCCCHHHHHHhcCCchhh-----hc----------ccccccccccHHHHHHHHHHH
Confidence            999998     6788999999 99999999999875411000     00          000111234456788899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhhHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDMRC  309 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksDIWS  309 (667)
                      +.||.|||++||+||||||+||+++. ++.+||+|||++......           ...|+|||.+ ....++.++||||
T Consensus       132 ~~~l~~lH~~~i~h~dlkp~nili~~-~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~s  209 (280)
T cd05049         132 ASGMVYLASQHFVHRDLATRNCLVGY-DLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESI-MYRKFTTESDVWS  209 (280)
T ss_pred             HHHHHHHhhCCeeccccccceEEEcC-CCeEEECCcccceecccCcceecCCCCcccceecChhhh-ccCCcchhhhHHH
Confidence            99999999999999999999999998 899999999999754221           1469999955 4556899999999


Q ss_pred             HHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCC
Q 005958          310 VGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  388 (667)
Q Consensus       310 LGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kR  388 (667)
                      |||++|||++ |..||..            .......+.+.   ....      .......+.++++||.+||+.||++|
T Consensus       210 lG~il~e~~~~g~~p~~~------------~~~~~~~~~~~---~~~~------~~~~~~~~~~~~~li~~~l~~~p~~R  268 (280)
T cd05049         210 FGVVLWEIFTYGKQPWYG------------LSNEEVIECIT---QGRL------LQRPRTCPSEVYDIMLGCWKRDPQQR  268 (280)
T ss_pred             HHHHHHHHHhcCCCCCCC------------CCHHHHHHHHH---cCCc------CCCCCCCCHHHHHHHHHHcCCCcccC
Confidence            9999999998 9999842            22222222221   1111      11224567899999999999999999


Q ss_pred             CCHHHHHc
Q 005958          389 ISCLDALR  396 (667)
Q Consensus       389 pSa~elL~  396 (667)
                      |++.|+++
T Consensus       269 p~~~eil~  276 (280)
T cd05049         269 INIKDIHE  276 (280)
T ss_pred             CCHHHHHH
Confidence            99999985

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=100.00  E-value=3.5e-37  Score=330.88  Aligned_cols=280  Identities=14%  Similarity=0.120  Sum_probs=200.7

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      ++..++|++.+.||+|+||    .||+|.+....+..+++.||+|+++...   ..+.+.+|+.+++++.     +|+||
T Consensus         3 ~~~~~~~~i~~~lG~G~fg----~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~-----~h~ni   73 (337)
T cd05054           3 EFPRDRLKLGKPLGRGAFG----KVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIG-----HHLNV   73 (337)
T ss_pred             ccCHHHhhhhcccccCcCc----eEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhc-----cCcch
Confidence            3445689999999999999    9999987654444467899999987422   2345678999999995     59999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCC--cccccccCCCH-------------H-HHhhcC-----
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWL--PTLEATLALDE-------------E-SVRKVG-----  217 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~--~~l~~~~~l~E-------------~-~a~~~~-----  217 (667)
                      +++++++..    .+..++++|| |+++|+|.+++......  +.......+..             . .++..+     
T Consensus        74 v~~~~~~~~----~~~~~~~v~e-y~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (337)
T cd05054          74 VNLLGACTK----PGGPLMVIVE-YCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFI  148 (337)
T ss_pred             hheeeeEec----CCCCEEEEEe-cCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccc
Confidence            999998862    4567899999 99999999999754210  00000000000             0 000000     


Q ss_pred             --------C---CCCCCCCccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-
Q 005958          218 --------D---DSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-  285 (667)
Q Consensus       218 --------~---~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-  285 (667)
                              +   ........+++...+..++.||+.||+|||++||+||||||+|||++. ++.+||+|||++..+... 
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~ivHrDikp~Nill~~-~~~vkL~DfG~a~~~~~~~  227 (337)
T cd05054         149 EDKSLSDVEEDEEGDELYKEPLTLEDLISYSFQVARGMEFLASRKCIHRDLAARNILLSE-NNVVKICDFGLARDIYKDP  227 (337)
T ss_pred             cCcchhhcccchhhhHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEeC-CCcEEEeccccchhcccCc
Confidence                    0   000000124567889999999999999999999999999999999998 899999999999865321 


Q ss_pred             ----------CCCCCCcccccCCCCCCchhhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhcc
Q 005958          286 ----------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNR  354 (667)
Q Consensus       286 ----------~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~  354 (667)
                                ...|+|||.+. ...++.++|||||||++|||++ |.+||....           ..+.+...+....  
T Consensus       228 ~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~-----------~~~~~~~~~~~~~--  293 (337)
T cd05054         228 DYVRKGDARLPLKWMAPESIF-DKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQ-----------IDEEFCRRLKEGT--  293 (337)
T ss_pred             chhhccCCCCCccccCcHHhc-CCCCCccccHHHHHHHHHHHHHcCCCCCCCCC-----------ccHHHHHHHhccC--
Confidence                      14699999654 4568999999999999999997 999985311           1111222211110  


Q ss_pred             CCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcC
Q 005958          355 NSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRH  397 (667)
Q Consensus       355 ~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~H  397 (667)
                             ........++++.+++.+||+.+|++||++.|+++|
T Consensus       294 -------~~~~~~~~~~~~~~l~~~cl~~~p~~RPs~~ell~~  329 (337)
T cd05054         294 -------RMRAPEYATPEIYSIMLDCWHNNPEDRPTFSELVEI  329 (337)
T ss_pred             -------CCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence                   011223567899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=100.00  E-value=8.6e-37  Score=320.32  Aligned_cols=272  Identities=20%  Similarity=0.265  Sum_probs=199.4

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      ...++|++.+.||+|+||    .||+|.++.     +++.||+|.++...    ......+|+++++.++      ||||
T Consensus         4 ~~~~~~~~~~~lg~g~~g----~v~~~~~~~-----~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~------h~~i   68 (302)
T cd07864           4 RCVDKFDIIGQIGEGTYG----QVYKARDKD-----TGELVALKKVRLDNEKEGFPITAIREIKILRQLN------HRNI   68 (302)
T ss_pred             hhhhhhheeeeecccCCE----EEEEEEECC-----CCcEEEEEEEeecccccCchHHHHHHHHHHHhCC------CCCe
Confidence            346889999999999999    999999987     78999999997532    2235578999999995      9999


Q ss_pred             eEEEEEEEecc-----cCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHH
Q 005958          159 MQVHGYVSSHT-----TSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLI  233 (667)
Q Consensus       159 v~l~~~~~~~~-----~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i  233 (667)
                      +++++++.+..     ....+.+++||| |+++ +|.+++....        ..+++                    ..+
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e-~~~~-~l~~~l~~~~--------~~~~~--------------------~~~  118 (302)
T cd07864          69 VNLKEIVTDKQDALDFKKDKGAFYLVFE-YMDH-DLMGLLESGL--------VHFSE--------------------DHI  118 (302)
T ss_pred             eeeeheecCcchhhhccccCCcEEEEEc-ccCc-cHHHHHhcCC--------CCCCH--------------------HHH
Confidence            99999987331     012348999999 9987 8888876532        13443                    567


Q ss_pred             HHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC----------CCCCCCcccccCCCCCCc
Q 005958          234 RLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED----------GPNNSSPDSNMDRRQMMI  303 (667)
Q Consensus       234 ~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~----------~~~Y~APE~l~~~~~ys~  303 (667)
                      +.++.||+.||.|||++||+|+||||+||+++. ++.+||+|||++......          ...|+|||.+.+...++.
T Consensus       119 ~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~  197 (302)
T cd07864         119 KSFMKQLLEGLNYCHKKNFLHRDIKCSNILLNN-KGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYGP  197 (302)
T ss_pred             HHHHHHHHHHHHHHHhCCeecCCCCHHHEEECC-CCcEEeCcccccccccCCcccccccceeccCccChHHhcCCCCCCc
Confidence            889999999999999999999999999999998 899999999999765322          246999997766666889


Q ss_pred             hhhHHHHHHHHHHHHhCCCCChhhhh---hhhhhhccCCChhH-HHHHHHHH-hcc---CCCCCCCCcccccCCCHHHHH
Q 005958          304 AFDMRCVGFMMAKMVLRELMDPLIFT---KFKSFLTKGIDPSC-LREFLLQV-LNR---NSSSGNTGFQILDRNWGAGWN  375 (667)
Q Consensus       304 ksDIWSLGviLyemltG~~PF~~~~~---~~~~~~~~g~~~~~-l~~~~~~~-~~~---~~~~~~~~~~~~~~~s~e~~d  375 (667)
                      ++|||||||++|||++|++||.....   ........+.+... +....... ...   ..............+++.+++
T Consensus       198 ~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (302)
T cd07864         198 AIDVWSCGCILGELFTKKPIFQANQELAQLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPTPALD  277 (302)
T ss_pred             hhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhhcccccccccccccccccccccchhhhcCCCCHHHHH
Confidence            99999999999999999999963211   11111111111111 00000000 000   000000000123346789999


Q ss_pred             HHHHhhhcCcCCCCCHHHHHcCCCC
Q 005958          376 LLSLLLATKPSKRISCLDALRHPFL  400 (667)
Q Consensus       376 LI~~~L~~DP~kRpSa~elL~HPwf  400 (667)
                      ||.+||+.||++|||+.+++.||||
T Consensus       278 li~~~l~~~P~~Rp~~~~il~~~~~  302 (302)
T cd07864         278 LLDHMLTLDPSKRCTAEEALNSPWL  302 (302)
T ss_pred             HHHHHccCChhhCCCHHHHhcCCCC
Confidence            9999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=100.00  E-value=2.4e-37  Score=325.01  Aligned_cols=247  Identities=18%  Similarity=0.231  Sum_probs=197.7

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      +.|.....||.|+||    .||++.+..     ++..||||.+...  ...+.+.+|+.+++.++      ||||+++++
T Consensus        22 ~~~~~~~~lg~g~~g----~v~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~------h~~ii~~~~   86 (292)
T cd06658          22 EYLDSFIKIGEGSTG----IVCIATEKH-----TGKQVAVKKMDLRKQQRRELLFNEVVIMRDYH------HENVVDMYN   86 (292)
T ss_pred             HHHhhhhcccCCCCe----EEEEEEECC-----CCCEEEEEEEecchHHHHHHHHHHHHHHHhCC------CCcHHHHHH
Confidence            455667889999999    999999987     7899999998642  23345689999999994      999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      .+.     ..+..|+||| |+++++|.+++...          .+++                    ..+..++.||+.|
T Consensus        87 ~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~----------~l~~--------------------~~~~~~~~qi~~~  130 (292)
T cd06658          87 SYL-----VGDELWVVME-FLEGGALTDIVTHT----------RMNE--------------------EQIATVCLSVLRA  130 (292)
T ss_pred             hee-----cCCeEEEEEe-CCCCCcHHHHHhcC----------CCCH--------------------HHHHHHHHHHHHH
Confidence            998     7789999999 99999999988642          3444                    4577899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      |.|||++||+||||||+||+++. ++.++|+|||++.....         +...|+|||.+ ....++.++||||+||++
T Consensus       131 l~~LH~~~ivH~dlkp~Nill~~-~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Dv~slGvil  208 (292)
T cd06658         131 LSYLHNQGVIHRDIKSDSILLTS-DGRIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVI-SRLPYGTEVDIWSLGIMV  208 (292)
T ss_pred             HHHHHHCCEeecCCCHHHEEEcC-CCCEEEccCcchhhcccccccCceeecCccccCHHHH-ccCCCCchhhHHHHHHHH
Confidence            99999999999999999999998 89999999999865432         22579999954 455689999999999999


Q ss_pred             HHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHH
Q 005958          315 AKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDA  394 (667)
Q Consensus       315 yemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~el  394 (667)
                      |||++|..||...            ........+......       ........++.+.+||.+||..||++|||++++
T Consensus       209 ~el~~g~~p~~~~------------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~i  269 (292)
T cd06658         209 IEMIDGEPPYFNE------------PPLQAMRRIRDNLPP-------RVKDSHKVSSVLRGFLDLMLVREPSQRATAQEL  269 (292)
T ss_pred             HHHHhCCCCCCCC------------CHHHHHHHHHhcCCC-------ccccccccCHHHHHHHHHHccCChhHCcCHHHH
Confidence            9999999998521            111111111111111       112223467899999999999999999999999


Q ss_pred             HcCCCCCCCC
Q 005958          395 LRHPFLCGPR  404 (667)
Q Consensus       395 L~HPwf~~~~  404 (667)
                      ++||||....
T Consensus       270 l~~~~~~~~~  279 (292)
T cd06658         270 LQHPFLKLAG  279 (292)
T ss_pred             hhChhhhccC
Confidence            9999999765

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=100.00  E-value=1.4e-36  Score=317.46  Aligned_cols=254  Identities=18%  Similarity=0.286  Sum_probs=202.1

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh------hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ------AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~------~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      +|++.+.||.|+||    .||+|.+...  ..+++.||+|++....      ..+...+|+.+++.+.     +|+||++
T Consensus         1 ~y~~~~~lg~G~~g----~v~~~~~~~~--~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~-----~~~~i~~   69 (290)
T cd05613           1 NFELLKVLGTGAYG----KVFLVRKVSG--HDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIR-----QSPFLVT   69 (290)
T ss_pred             CceeeeeeccCCcc----eEEEEEeccC--CCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcc-----cCCChhc
Confidence            58999999999999    9999998631  1268999999987521      2345678999999996     6999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     .+..+|+||| |+++++|.+++....         .+++                    ..+..++.||
T Consensus        70 ~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~l~~--------------------~~~~~~~~qi  114 (290)
T cd05613          70 LHYAFQ-----TDTKLHLILD-YINGGELFTHLSQRE---------RFKE--------------------QEVQIYSGEI  114 (290)
T ss_pred             eeeEee-----cCCeEEEEEe-cCCCCcHHHHHHHcC---------CCCH--------------------HHHHHHHHHH
Confidence            999998     7789999999 999999999998654         3443                    4577899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC----------CCCCCCCcccccCC-CCCCchhhHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE----------DGPNNSSPDSNMDR-RQMMIAFDMRC  309 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~----------~~~~Y~APE~l~~~-~~ys~ksDIWS  309 (667)
                      +.||.|||++|++||||||+|||++. ++.+||+|||++.....          +...|+|||.+... ..++.++||||
T Consensus       115 ~~al~~lH~~~i~H~dl~p~nil~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~s  193 (290)
T cd05613         115 VLALEHLHKLGIIYRDIKLENILLDS-NGHVVLTDFGLSKEFHEDEVERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWS  193 (290)
T ss_pred             HHHHHHHHhCCeeccCCCHHHeEECC-CCCEEEeeCccceecccccccccccccCCcccCChhhccCCCCCCCccccHHH
Confidence            99999999999999999999999998 89999999999976543          23579999976543 35788999999


Q ss_pred             HHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          310 VGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       310 LGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      |||++|+|++|..||...          + ......+..........       +....+++.+.+|+.+||+.||++||
T Consensus       194 lG~~l~~ll~g~~p~~~~----------~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ll~~~l~~~p~~R~  255 (290)
T cd05613         194 MGVLMYELLTGASPFTVD----------G-EKNSQAEISRRILKSEP-------PYPQEMSALAKDIIQRLLMKDPKKRL  255 (290)
T ss_pred             HHHHHHHHhcCCCCCCcC----------C-ccccHHHHHHHhhccCC-------CCCccCCHHHHHHHHHHhcCCHHHhc
Confidence            999999999999998411          1 11111222222222111       12345678999999999999999997


Q ss_pred             -----CHHHHHcCCCCCCCCC
Q 005958          390 -----SCLDALRHPFLCGPRW  405 (667)
Q Consensus       390 -----Sa~elL~HPwf~~~~~  405 (667)
                           ++++++.||||+...|
T Consensus       256 ~~~~~~~~~l~~~~~~~~~~~  276 (290)
T cd05613         256 GCGPSDADEIKKHPFFQKINW  276 (290)
T ss_pred             CCCCCCHHHHHcCcccccCCH
Confidence                 8999999999999875

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=4.9e-37  Score=320.21  Aligned_cols=260  Identities=12%  Similarity=0.179  Sum_probs=203.8

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ..++|++.+.||+|+||    +||+|.+..     +++.||+|++...   ...+.+.+|+++++.++      ||||++
T Consensus         3 ~~~~~~~~~~ig~g~~g----~v~~~~~~~-----~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~------h~~i~~   67 (284)
T cd06620           3 RNEDLETISDLGAGNGG----SVSKVKHIP-----TGTVMAKKVVHIGAKSSVRKQILRELQIMHECR------SPYIVS   67 (284)
T ss_pred             cHHHHHHHHHcCCCCCe----EEEEEEEcC-----CCcEEEEEEEEecCcchHHHHHHHHHHHHHHcC------CCCcce
Confidence            45789999999999999    999999987     7899999988643   23456789999999994      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     ..+.+++||| |+++|+|.+++.+.+         .+++                    ..++.++.|+
T Consensus        68 ~~~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~~---------~~~~--------------------~~~~~~~~~i  112 (284)
T cd06620          68 FYGAFL-----NENNICMCME-FMDCGSLDRIYKKGG---------PIPV--------------------EILGKIAVAV  112 (284)
T ss_pred             EeeeEe-----cCCEEEEEEe-cCCCCCHHHHHHhcc---------CCCH--------------------HHHHHHHHHH
Confidence            999998     7789999999 999999999987643         3343                    4578899999


Q ss_pred             HHHHHHHHH-CCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-------CCCCCCCcccccCCCCCCchhhHHHHHH
Q 005958          241 LIGVNYLHS-HGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-------DGPNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       241 l~aL~yLHs-~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-------~~~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      +.||.|||+ +||+||||||+||+++. ++.++|+|||++.....       +...|+|||.+.+ ..++.++||||+||
T Consensus       113 ~~~l~~LH~~~~i~H~dl~p~nil~~~-~~~~~l~d~gl~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~slG~  190 (284)
T cd06620         113 VEGLTYLYNVHRIMHRDIKPSNILVNS-RGQIKLCDFGVSGELINSIADTFVGTSTYMSPERIQG-GKYTVKSDVWSLGI  190 (284)
T ss_pred             HHHHHHHHHhcCeeccCCCHHHEEECC-CCcEEEccCCcccchhhhccCccccCcccCCHHHHcc-CCCCccchHHHHHH
Confidence            999999997 69999999999999998 89999999999865422       2368999996554 46899999999999


Q ss_pred             HHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHH
Q 005958          313 MMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCL  392 (667)
Q Consensus       313 iLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~  392 (667)
                      ++|+|++|..||........    ....+..+.+..........+.    + ....++.++.+||.+||+.||++|||+.
T Consensus       191 ~l~~l~tg~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~li~~~l~~dp~~Rpt~~  261 (284)
T cd06620         191 SIIELALGKFPFAFSNIDDD----GQDDPMGILDLLQQIVQEPPPR----L-PSSDFPEDLRDFVDACLLKDPTERPTPQ  261 (284)
T ss_pred             HHHHHHhCCCCCcccchhhh----hhhhhhHHHHHHHHHhhccCCC----C-CchhcCHHHHHHHHHHhcCCcccCcCHH
Confidence            99999999999963211100    0011122223333332221110    0 0112567899999999999999999999


Q ss_pred             HHHcCCCCCCCC
Q 005958          393 DALRHPFLCGPR  404 (667)
Q Consensus       393 elL~HPwf~~~~  404 (667)
                      |+++||||....
T Consensus       262 e~~~~~~~~~~~  273 (284)
T cd06620         262 QLCAMPPFIQAL  273 (284)
T ss_pred             HHhcCccccccc
Confidence            999999997643

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=1.4e-36  Score=311.49  Aligned_cols=239  Identities=17%  Similarity=0.190  Sum_probs=190.2

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      .++|++.+.||+|+||    .||+|..+.      +..+|+|.+.... ....+.+|+.+++++.      ||||+++++
T Consensus         3 ~~~~~~~~~lg~G~~~----~vy~~~~~~------~~~~a~K~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~~~~   66 (256)
T cd05114           3 PSELTFMKELGSGQFG----VVHLGKWRA------QIKVAIKAINEGAMSEEDFIEEAKVMMKLS------HPKLVQLYG   66 (256)
T ss_pred             HHHcEEeeEecCCcCc----eEEEEEecc------CceEEEEecccCCccHHHHHHHHHHHHHCC------CCCceeEEE
Confidence            4679999999999999    999998874      5689999987532 3456788999999994      999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++.     ..+..++||| |+++|+|.+++....        ..+++                    ..++.++.|++.|
T Consensus        67 ~~~-----~~~~~~iv~e-~~~~~~L~~~~~~~~--------~~~~~--------------------~~~~~~~~~i~~~  112 (256)
T cd05114          67 VCT-----QQKPLYIVTE-FMENGCLLNYLRQRQ--------GKLSK--------------------DMLLSMCQDVCEG  112 (256)
T ss_pred             EEc-----cCCCEEEEEE-cCCCCcHHHHHHhCc--------cCCCH--------------------HHHHHHHHHHHHH
Confidence            998     7788999999 999999999987532        12343                    4578899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC----------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED----------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~----------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      |.|||++||+||||||+||+++. ++.+||+|||.+......          ...|+|||.+. ...++.++|||||||+
T Consensus       113 l~~lH~~~i~H~dl~p~ni~i~~-~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~s~G~~  190 (256)
T cd05114         113 MEYLERNSFIHRDLAARNCLVSS-TGVVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPEVFN-FSKYSSKSDVWSFGVL  190 (256)
T ss_pred             HHHHHHCCccccccCcceEEEcC-CCeEEECCCCCccccCCCceeccCCCCCchhhCChhhcc-cCccchhhhhHHHHHH
Confidence            99999999999999999999998 899999999998754321          13699999654 4568999999999999


Q ss_pred             HHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHH
Q 005958          314 MAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCL  392 (667)
Q Consensus       314 Lyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~  392 (667)
                      +|||++ |++||...            ........+   .....      .......+.++.+|+.+||+.||++||+++
T Consensus       191 l~el~~~g~~p~~~~------------~~~~~~~~i---~~~~~------~~~~~~~~~~~~~li~~c~~~~p~~Rps~~  249 (256)
T cd05114         191 MWEVFTEGKMPFEKK------------SNYEVVEMI---SRGFR------LYRPKLASMTVYEVMYSCWHEKPEGRPTFA  249 (256)
T ss_pred             HHHHHcCCCCCCCCC------------CHHHHHHHH---HCCCC------CCCCCCCCHHHHHHHHHHccCCcccCcCHH
Confidence            999999 89998521            111111111   11111      111233567899999999999999999999


Q ss_pred             HHHc
Q 005958          393 DALR  396 (667)
Q Consensus       393 elL~  396 (667)
                      ++++
T Consensus       250 ~l~~  253 (256)
T cd05114         250 ELLR  253 (256)
T ss_pred             HHHH
Confidence            9985

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=5.8e-37  Score=329.38  Aligned_cols=272  Identities=21%  Similarity=0.282  Sum_probs=203.7

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      .++|.+.+.||+|+||    .||+|.+..     +++.||||++....    ....+.+|+.+++.+.      ||||++
T Consensus        14 ~~~y~~~~~ig~g~~g----~v~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~------h~niv~   78 (342)
T cd07879          14 PERYTSLKQVGSGAYG----SVCSAIDKR-----TGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQ------HENVIG   78 (342)
T ss_pred             ccceEEEEEeeecCCe----EEEEEEeCC-----CCcEEEEEEecCccccccchhHHHHHHHHHHhcC------CCCccc
Confidence            3689999999999999    999999987     78999999987521    2245678999999994      999999


Q ss_pred             EEEEEEeccc-CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          161 VHGYVSSHTT-SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       161 l~~~~~~~~~-~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      +++++..... .....+|+||| |+.. +|.+++..           .+++                    ..++.++.|
T Consensus        79 ~~~~~~~~~~~~~~~~~~lv~e-~~~~-~l~~~~~~-----------~~~~--------------------~~~~~~~~q  125 (342)
T cd07879          79 LLDVFTSAVSGDEFQDFYLVMP-YMQT-DLQKIMGH-----------PLSE--------------------DKVQYLVYQ  125 (342)
T ss_pred             hhheecccccCCCCceEEEEec-cccc-CHHHHHcC-----------CCCH--------------------HHHHHHHHH
Confidence            9999873311 12346799999 8886 88776532           3443                    457789999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      ++.||+|||++||+||||||+||+++. ++.+||+|||++......      .+.|+|||.+.+...++.++|||||||+
T Consensus       126 i~~aL~~LH~~~i~H~dlkp~NIll~~-~~~~kL~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvi  204 (342)
T cd07879         126 MLCGLKYIHSAGIIHRDLKPGNLAVNE-DCELKILDFGLARHADAEMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCI  204 (342)
T ss_pred             HHHHHHHHHHCCcccCCCCHHHEEECC-CCCEEEeeCCCCcCCCCCCCCceeeecccChhhhcCccccCchHHHHHHHHH
Confidence            999999999999999999999999998 899999999999765432      2569999977665678999999999999


Q ss_pred             HHHHHhCCCCChhhh---hhhhhhhccCCChhHHHHHHHH-----HhccCCCCCCCC-cccccCCCHHHHHHHHHhhhcC
Q 005958          314 MAKMVLRELMDPLIF---TKFKSFLTKGIDPSCLREFLLQ-----VLNRNSSSGNTG-FQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       314 LyemltG~~PF~~~~---~~~~~~~~~g~~~~~l~~~~~~-----~~~~~~~~~~~~-~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      +|||++|+.||....   ....+....|.+...+.+....     ............ ....+..++++++||.+||+.|
T Consensus       205 l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~d  284 (342)
T cd07879         205 MAEMLTGKTLFKGKDYLDQLTQILKVTGVPGPEFVQKLEDKAAKSYIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELD  284 (342)
T ss_pred             HHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhcccchHHHHhhcCCcccchHHHHhcCCCHHHHHHHHHHcCCC
Confidence            999999999997422   2222222233332222222111     000000000001 1123457789999999999999


Q ss_pred             cCCCCCHHHHHcCCCCCCCCC
Q 005958          385 PSKRISCLDALRHPFLCGPRW  405 (667)
Q Consensus       385 P~kRpSa~elL~HPwf~~~~~  405 (667)
                      |++||++++++.||||.....
T Consensus       285 P~~R~~~~e~l~h~~f~~~~~  305 (342)
T cd07879         285 VDKRLTATEALEHPYFDSFRD  305 (342)
T ss_pred             hhhCcCHHHHhcCcchhhccc
Confidence            999999999999999998764

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=1.1e-36  Score=312.68  Aligned_cols=243  Identities=16%  Similarity=0.191  Sum_probs=194.0

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      .+..++|++.++||+|+||    .||+|.+..      +..||+|.+.... ..+.+.+|+.+++.++      |+||++
T Consensus         2 ~~~~~~~~~~~~lg~g~~g----~v~~~~~~~------~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~   65 (261)
T cd05072           2 EIPRESIKLVKKLGAGQFG----EVWMGYYNN------STKVAVKTLKPGTMSVQAFLEEANLMKTLQ------HDKLVR   65 (261)
T ss_pred             cCchHHeEEeeecCCcCCc----eEEEEEecC------CceEEEEEccCCchhHHHHHHHHHHHHhCC------CCCeee
Confidence            3566899999999999999    999999763      6789999987532 3456789999999994      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     ..+..+++|| |+.+|+|.+++....       ...++                    ...+..++.|+
T Consensus        66 ~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~-------~~~~~--------------------~~~~~~~~~~l  112 (261)
T cd05072          66 LYAVVT-----KEEPIYIITE-YMAKGSLLDFLKSDE-------GGKVL--------------------LPKLIDFSAQI  112 (261)
T ss_pred             EEEEEc-----CCCCcEEEEe-cCCCCcHHHHHHHhc-------CCCCC--------------------HHHHHHHHHHH
Confidence            999988     7788999999 999999999997632       01223                    34577899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC----------CCCCCcccccCCCCCCchhhHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG----------PNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~----------~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      +.||+|||++|++||||||+||+++. ++.+||+|||++.......          ..|+|||.+ ....++.++|||||
T Consensus       113 ~~~l~~LH~~~i~H~dl~p~nili~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~sl  190 (261)
T cd05072         113 AEGMAYIERKNYIHRDLRAANVLVSE-SLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAI-NFGSFTIKSDVWSF  190 (261)
T ss_pred             HHHHHHHHHCCeeccccchhhEEecC-CCcEEECCCccceecCCCceeccCCCccceecCCHHHh-ccCCCChhhhhhhh
Confidence            99999999999999999999999998 8999999999998654321          359999955 44568999999999


Q ss_pred             HHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          311 GFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       311 GviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      ||++|+|++ |..||+..            ........+....         ..+....++.++.+|+.+||..||++||
T Consensus       191 G~~l~~l~t~g~~p~~~~------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~li~~~l~~~p~~Rp  249 (261)
T cd05072         191 GILLYEIVTYGKIPYPGM------------SNSDVMSALQRGY---------RMPRMENCPDELYDIMKTCWKEKAEERP  249 (261)
T ss_pred             HHHHHHHHccCCCCCCCC------------CHHHHHHHHHcCC---------CCCCCCCCCHHHHHHHHHHccCCcccCc
Confidence            999999998 99998521            2222222221111         1223345778999999999999999999


Q ss_pred             CHHHHHc
Q 005958          390 SCLDALR  396 (667)
Q Consensus       390 Sa~elL~  396 (667)
                      +++++++
T Consensus       250 ~~~~i~~  256 (261)
T cd05072         250 TFDYLQS  256 (261)
T ss_pred             CHHHHHH
Confidence            9999864

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=8.6e-37  Score=319.65  Aligned_cols=244  Identities=12%  Similarity=0.101  Sum_probs=189.3

Q ss_pred             ccCCeEEE--eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-----HHHHHHHHHHHHHHhhccCCCCC
Q 005958           84 NMGDFKIL--DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-----QRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        84 ~~~~y~i~--~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-----~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      ..++++..  ..||+|++|    .||+|...       |+.||||.+.....     .+.+.+|+.+|++++      ||
T Consensus        16 ~~~~i~~~~~~~i~~g~~~----~v~~~~~~-------~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~------h~   78 (283)
T PHA02988         16 ESDDIDKYTSVLIKENDQN----SIYKGIFN-------NKEVIIRTFKKFHKGHKVLIDITENEIKNLRRID------SN   78 (283)
T ss_pred             CHHHcCCCCCeEEeeCCce----EEEEEEEC-------CEEEEEEeccccccccHHHHHHHHHHHHHHHhcC------CC
Confidence            33444444  678999999    99999874       68999999975322     245579999999995      99


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++.+.. .....+++||| |+++|+|.+++.+.+         .+++                    .....+
T Consensus        79 nIv~~~g~~~~~~-~~~~~~~lv~E-y~~~g~L~~~l~~~~---------~~~~--------------------~~~~~i  127 (283)
T PHA02988         79 NILKIYGFIIDIV-DDLPRLSLILE-YCTRGYLREVLDKEK---------DLSF--------------------KTKLDM  127 (283)
T ss_pred             CEEEEeeeEEecc-cCCCceEEEEE-eCCCCcHHHHHhhCC---------CCCh--------------------hHHHHH
Confidence            9999999997310 13567899999 999999999998653         3333                    345679


Q ss_pred             HHHHHHHHHHHHH-CCCcccCCCCCcEEEcCCCCeEEEeeecccccccC------CCCCCCCcccccCC-CCCCchhhHH
Q 005958          237 MRDLLIGVNYLHS-HGLAHTELRLENVHISPVDRHIKVGILGNAADFYE------DGPNNSSPDSNMDR-RQMMIAFDMR  308 (667)
Q Consensus       237 ~~QIl~aL~yLHs-~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~------~~~~Y~APE~l~~~-~~ys~ksDIW  308 (667)
                      +.|++.||.|||+ .+++||||||+|||++. ++.+||+|||+++....      +...|+|||++.+. ..|+.++|||
T Consensus       128 ~~~i~~~l~~lH~~~~~~Hrdlkp~nill~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~k~Di~  206 (283)
T PHA02988        128 AIDCCKGLYNLYKYTNKPYKNLTSVSFLVTE-NYKLKIICHGLEKILSSPPFKNVNFMVYFSYKMLNDIFSEYTIKDDIY  206 (283)
T ss_pred             HHHHHHHHHHHHhcCCCCCCcCChhhEEECC-CCcEEEcccchHhhhccccccccCcccccCHHHhhhccccccchhhhh
Confidence            9999999999998 49999999999999998 89999999999975432      33679999966542 5789999999


Q ss_pred             HHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCC
Q 005958          309 CVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  388 (667)
Q Consensus       309 SLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kR  388 (667)
                      ||||++|||++|+.||..            .+...+...   +.....     ..+....+++++++||.+||+.||++|
T Consensus       207 SlGvil~el~~g~~Pf~~------------~~~~~~~~~---i~~~~~-----~~~~~~~~~~~l~~li~~cl~~dp~~R  266 (283)
T PHA02988        207 SLGVVLWEIFTGKIPFEN------------LTTKEIYDL---IINKNN-----SLKLPLDCPLEIKCIVEACTSHDSIKR  266 (283)
T ss_pred             HHHHHHHHHHHCCCCCCC------------CCHHHHHHH---HHhcCC-----CCCCCCcCcHHHHHHHHHHhcCCcccC
Confidence            999999999999999852            222222222   111111     122233578899999999999999999


Q ss_pred             CCHHHHHc
Q 005958          389 ISCLDALR  396 (667)
Q Consensus       389 pSa~elL~  396 (667)
                      ||++++++
T Consensus       267 ps~~ell~  274 (283)
T PHA02988        267 PNIKEILY  274 (283)
T ss_pred             cCHHHHHH
Confidence            99999985

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=100.00  E-value=1.5e-36  Score=310.66  Aligned_cols=240  Identities=15%  Similarity=0.190  Sum_probs=193.1

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      +|++.+.||.|+||    .||++.+..     +++.||+|.++..   ...+...+|+.+++.++      ||||+++++
T Consensus         1 ~y~~~~~lg~g~~g----~v~~~~~~~-----~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~~~~   65 (255)
T cd08219           1 QYNVLRVVGEGSFG----RALLVQHVN-----SDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMK------HPNIVAFKE   65 (255)
T ss_pred             CceEEEEeeccCCe----EEEEEEEcC-----CCceEEEEEEEcCcchHHHHHHHHHHHHHHhCC------CCCcceEEE
Confidence            58999999999999    999999987     7899999998642   23355688999999984      999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      .+.     ..+.+|+||| |+++|+|.+++....       ...+++                    ..+..++.||+.|
T Consensus        66 ~~~-----~~~~~~lv~e-~~~~~~l~~~~~~~~-------~~~~~~--------------------~~~~~~~~~i~~a  112 (255)
T cd08219          66 SFE-----ADGHLYIVME-YCDGGDLMQKIKLQR-------GKLFPE--------------------DTILQWFVQMCLG  112 (255)
T ss_pred             EEE-----ECCEEEEEEe-eCCCCcHHHHHHhcc-------CCCCCH--------------------HHHHHHHHHHHHH
Confidence            998     7789999999 999999999987532       012343                    4577899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      |.|||++||+|+||||+||+++. ++.++|+|||.+......         .+.|+|||++ ....++.++|+||+|+++
T Consensus       113 l~~lH~~~i~H~dl~p~nili~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~-~~~~~~~~~Dv~slG~i~  190 (255)
T cd08219         113 VQHIHEKRVLHRDIKSKNIFLTQ-NGKVKLGDFGSARLLTSPGAYACTYVGTPYYVPPEIW-ENMPYNNKSDIWSLGCIL  190 (255)
T ss_pred             HHHHhhCCcccCCCCcceEEECC-CCcEEEcccCcceeecccccccccccCCccccCHHHH-ccCCcCchhhhhhhchhh
Confidence            99999999999999999999998 899999999999765432         2569999954 445689999999999999


Q ss_pred             HHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHH
Q 005958          315 AKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDA  394 (667)
Q Consensus       315 yemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~el  394 (667)
                      |+|++|.+||..            .+....   .........      .+....++.++++||.+||+.||++|||+.++
T Consensus       191 ~~l~~g~~p~~~------------~~~~~~---~~~~~~~~~------~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~i  249 (255)
T cd08219         191 YELCTLKHPFQA------------NSWKNL---ILKVCQGSY------KPLPSHYSYELRSLIKQMFKRNPRSRPSATTI  249 (255)
T ss_pred             eehhhccCCCCC------------CCHHHH---HHHHhcCCC------CCCCcccCHHHHHHHHHHHhCCcccCCCHHHH
Confidence            999999999852            111111   111111110      11234567899999999999999999999999


Q ss_pred             HcC
Q 005958          395 LRH  397 (667)
Q Consensus       395 L~H  397 (667)
                      +.-
T Consensus       250 l~~  252 (255)
T cd08219         250 LSR  252 (255)
T ss_pred             hhc
Confidence            864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=100.00  E-value=1.5e-36  Score=317.43  Aligned_cols=267  Identities=15%  Similarity=0.136  Sum_probs=202.4

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      ...+..++|++.+.||+|+||    .||++.+...........+|+|.+....   ....+.+|+++++++.     +|+
T Consensus         6 ~~~~~~~~~~~~~~ig~g~~g----~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~   76 (293)
T cd05053           6 EWELPRDRLTLGKPLGEGAFG----QVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIG-----KHK   76 (293)
T ss_pred             ccccCHhHeEEeeEecccccc----cEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhc-----CCC
Confidence            455667899999999999999    9999998753323355889999987532   2245688999999995     599


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++.     ..+.++++|| |+.+|+|.+++..+..........             ........++...+..+
T Consensus        77 ~i~~~~~~~~-----~~~~~~li~e-~~~~~~L~~~l~~~~~~~~~~~~~-------------~~~~~~~~l~~~~~~~i  137 (293)
T cd05053          77 NIINLLGVCT-----QEGPLYVVVE-YAAHGNLRDFLRARRPPGEYASPD-------------DPRPPEETLTQKDLVSF  137 (293)
T ss_pred             CeeeEEEEEc-----CCCCeEEEEE-eCCCCcHHHHHHhcCCCccccccc-------------cccccccccCHHHHHHH
Confidence            9999999998     7788999999 999999999998753111100000             00011223455778899


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchh
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAF  305 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ks  305 (667)
                      +.||+.||+|||++||+||||||+|||++. ++.+||+|||+++.....           ...|+|||.+ ....++.++
T Consensus       138 ~~qi~~al~~LH~~~ivH~dlkp~Nil~~~-~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~  215 (293)
T cd05053         138 AYQVARGMEFLASKKCIHRDLAARNVLVTE-DHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEAL-FDRVYTHQS  215 (293)
T ss_pred             HHHHHHHHHHHHHCCccccccceeeEEEcC-CCeEEeCccccccccccccceeccCCCCCCccccCHHHh-ccCCcCccc
Confidence            999999999999999999999999999998 899999999999754321           1469999954 455689999


Q ss_pred             hHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          306 DMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       306 DIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      |||||||++|||++ |..||+.            .......+.+..   ..      ........+.++.+|+.+||..|
T Consensus       216 Di~slG~il~el~~~g~~p~~~------------~~~~~~~~~~~~---~~------~~~~~~~~~~~~~~li~~~l~~~  274 (293)
T cd05053         216 DVWSFGVLLWEIFTLGGSPYPG------------IPVEELFKLLKE---GY------RMEKPQNCTQELYHLMRDCWHEV  274 (293)
T ss_pred             ceeehhhHHHHHhcCCCCCCCC------------CCHHHHHHHHHc---CC------cCCCCCCCCHHHHHHHHHHcccC
Confidence            99999999999997 8888852            222222222211   10      11223456789999999999999


Q ss_pred             cCCCCCHHHHHcC
Q 005958          385 PSKRISCLDALRH  397 (667)
Q Consensus       385 P~kRpSa~elL~H  397 (667)
                      |++|||+.+++++
T Consensus       275 p~~Rps~~eil~~  287 (293)
T cd05053         275 PSQRPTFKQLVED  287 (293)
T ss_pred             cccCcCHHHHHHH
Confidence            9999999999875

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=100.00  E-value=7.5e-37  Score=322.67  Aligned_cols=260  Identities=17%  Similarity=0.152  Sum_probs=196.5

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCc--EEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCC
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNT--KVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~--~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      .+..++|++.+.||+|+||    .||+|.+..     ++.  .+|+|.+...   .....+.+|++++.++.     +||
T Consensus         3 ~~~~~~~~~~~~lg~G~~g----~V~~a~~~~-----~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~-----~h~   68 (303)
T cd05088           3 VLEWNDIKFQDVIGEGNFG----QVLKARIKK-----DGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLG-----HHP   68 (303)
T ss_pred             ccchhhceeeeeecCCCCc----eEEEEEEcc-----CCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhc-----CCC
Confidence            3566899999999999999    999999876     454  4688877642   23345688999999995     599


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++.     ..+..|+||| |+++|+|.+++...+...         +..+..    ........++...++.+
T Consensus        69 ~iv~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~~~~---------~~~~~~----~~~~~~~~l~~~~~~~~  129 (303)
T cd05088          69 NIINLLGACE-----HRGYLYLAIE-YAPHGNLLDFLRKSRVLE---------TDPAFA----IANSTASTLSSQQLLHF  129 (303)
T ss_pred             CcceEEEEEC-----CCCCceEEEE-eCCCCcHHHHHHhccccc---------cccccc----ccccccCcCCHHHHHHH
Confidence            9999999998     7788999999 999999999998754211         100000    00011123455778899


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHH
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      +.||+.||+|||++||+||||||+|||++. ++.+||+|||++......        ...|+|||.+ ....++.++|||
T Consensus       130 ~~qi~~al~~LH~~gi~H~dlkp~Nili~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~  207 (303)
T cd05088         130 AADVARGMDYLSQKQFIHRDLAARNILVGE-NYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESL-NYSVYTTNSDVW  207 (303)
T ss_pred             HHHHHHHHHHHHhCCccccccchheEEecC-CCcEEeCccccCcccchhhhcccCCCcccccCHHHH-hccCCcccccch
Confidence            999999999999999999999999999998 889999999998633211        1459999954 455689999999


Q ss_pred             HHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          309 CVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       309 SLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      ||||++|||++ |.+||..            .+.....+.+.   ...      ........++++.+||.+||+.||++
T Consensus       208 slG~il~ellt~g~~p~~~------------~~~~~~~~~~~---~~~------~~~~~~~~~~~~~~li~~~l~~~p~~  266 (303)
T cd05088         208 SYGVLLWEIVSLGGTPYCG------------MTCAELYEKLP---QGY------RLEKPLNCDDEVYDLMRQCWREKPYE  266 (303)
T ss_pred             hhhhHHHHHHhcCCCCccc------------CChHHHHHHHh---cCC------cCCCCCCCCHHHHHHHHHHcCCChhh
Confidence            99999999998 9999842            12222222111   110      11122346789999999999999999


Q ss_pred             CCCHHHHHcC
Q 005958          388 RISCLDALRH  397 (667)
Q Consensus       388 RpSa~elL~H  397 (667)
                      ||++++++++
T Consensus       267 Rp~~~~il~~  276 (303)
T cd05088         267 RPSFAQILVS  276 (303)
T ss_pred             CcCHHHHHHH
Confidence            9999999875

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=100.00  E-value=4.9e-37  Score=318.99  Aligned_cols=245  Identities=20%  Similarity=0.258  Sum_probs=198.3

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ..|+..+.||.|+||    .||+|.+..     ++..||+|.+...   .....+.+|+.+++++      +||||++++
T Consensus         4 ~~y~~~~~lg~g~~~----~vy~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~   68 (277)
T cd06640           4 ELFTKLERIGKGSFG----EVFKGIDNR-----TQQVVAIKIIDLEEAEDEIEDIQQEITVLSQC------DSPYVTKYY   68 (277)
T ss_pred             HhhhhhhhcccCCCe----EEEEEEEcc-----CCEEEEEEEEeccccHHHHHHHHHHHHHHHhC------CCCCEeeEE
Confidence            458889999999999    999999987     7899999998753   2334568899999998      499999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     +.+..|+||| |+++|+|.+++...          .+++                    ..+..++.|++.
T Consensus        69 ~~~~-----~~~~~~lv~e-~~~~~~L~~~i~~~----------~l~~--------------------~~~~~~~~~l~~  112 (277)
T cd06640          69 GSYL-----KGTKLWIIME-YLGGGSALDLLRAG----------PFDE--------------------FQIATMLKEILK  112 (277)
T ss_pred             EEEE-----ECCEEEEEEe-cCCCCcHHHHHhcC----------CCCH--------------------HHHHHHHHHHHH
Confidence            9998     7789999999 99999999998753          3444                    346779999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      ||+|||++|++|+||+|+||+++. ++.++|+|||++......         ...|+|||.+. ...++.++|+|||||+
T Consensus       113 ~l~~lh~~~ivH~dl~p~Nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~apE~~~-~~~~~~~~Dv~slG~i  190 (277)
T cd06640         113 GLDYLHSEKKIHRDIKAANVLLSE-QGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQ-QSAYDSKADIWSLGIT  190 (277)
T ss_pred             HHHHHHhCCccCcCCChhhEEEcC-CCCEEEcccccceeccCCccccccccCcccccCHhHhc-cCCCccHHHHHHHHHH
Confidence            999999999999999999999998 899999999999765432         24689999654 4458999999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      +|||++|.+||.+..            +......+   .....      .......+.++.+||.+||+.||++||++.+
T Consensus       191 l~el~tg~~p~~~~~------------~~~~~~~~---~~~~~------~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~  249 (277)
T cd06640         191 AIELAKGEPPNSDMH------------PMRVLFLI---PKNNP------PTLTGEFSKPFKEFIDACLNKDPSFRPTAKE  249 (277)
T ss_pred             HHHHHHCCCCCCCcC------------hHhHhhhh---hcCCC------CCCchhhhHHHHHHHHHHcccCcccCcCHHH
Confidence            999999999985321            11111111   00000      1122345678999999999999999999999


Q ss_pred             HHcCCCCCCCC
Q 005958          394 ALRHPFLCGPR  404 (667)
Q Consensus       394 lL~HPwf~~~~  404 (667)
                      +++||||....
T Consensus       250 il~~~~~~~~~  260 (277)
T cd06640         250 LLKHKFIVKNA  260 (277)
T ss_pred             HHhChHhhhcc
Confidence            99999998765

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=3.9e-38  Score=337.04  Aligned_cols=245  Identities=18%  Similarity=0.258  Sum_probs=203.7

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      .+++.++...-++.||.|+.|    .||+|+.+       ++.||||+++..     ...+|+-|++|+      ||||+
T Consensus       118 ~WeiPFe~IsELeWlGSGaQG----AVF~Grl~-------netVAVKKV~el-----kETdIKHLRkLk------H~NII  175 (904)
T KOG4721|consen  118 LWEIPFEEISELEWLGSGAQG----AVFLGRLH-------NETVAVKKVREL-----KETDIKHLRKLK------HPNII  175 (904)
T ss_pred             hccCCHHHhhhhhhhccCccc----ceeeeecc-------CceehhHHHhhh-----hhhhHHHHHhcc------Cccee
Confidence            344555566667899999999    99999987       589999997432     246788899995      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      .|.|++.     ....+||||| ||..|-|+..|+..+         .+.                    +..+..|..+
T Consensus       176 ~FkGVCt-----qsPcyCIiME-fCa~GqL~~VLka~~---------~it--------------------p~llv~Wsk~  220 (904)
T KOG4721|consen  176 TFKGVCT-----QSPCYCIIME-FCAQGQLYEVLKAGR---------PIT--------------------PSLLVDWSKG  220 (904)
T ss_pred             eEeeeec-----CCceeEEeee-ccccccHHHHHhccC---------ccC--------------------HHHHHHHHHH
Confidence            9999998     7889999999 999999999999764         222                    3567889999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC--------CCCCCcccccCCCCCCchhhHHHHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG--------PNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~--------~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      |+.|++|||.+.|||||||.-||||+. +..|||+|||.++.+....        ..|||||+ +...+.+.|+||||||
T Consensus       221 IA~GM~YLH~hKIIHRDLKSPNiLIs~-~d~VKIsDFGTS~e~~~~STkMSFaGTVaWMAPEv-IrnePcsEKVDIwSfG  298 (904)
T KOG4721|consen  221 IAGGMNYLHLHKIIHRDLKSPNILISY-DDVVKISDFGTSKELSDKSTKMSFAGTVAWMAPEV-IRNEPCSEKVDIWSFG  298 (904)
T ss_pred             hhhhhHHHHHhhHhhhccCCCceEeec-cceEEeccccchHhhhhhhhhhhhhhhHhhhCHHH-hhcCCcccccceehhH
Confidence            999999999999999999999999998 8999999999998776543        67999995 5556799999999999


Q ss_pred             HHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH
Q 005958          312 FMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC  391 (667)
Q Consensus       312 viLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa  391 (667)
                      ||||||+||..||.++++..-++.. |.                   ....++.+..+.+.++-||++||+-.|..||++
T Consensus       299 VVLWEmLT~EiPYkdVdssAIIwGV-Gs-------------------NsL~LpvPstcP~GfklL~Kqcw~sKpRNRPSF  358 (904)
T KOG4721|consen  299 VVLWEMLTGEIPYKDVDSSAIIWGV-GS-------------------NSLHLPVPSTCPDGFKLLLKQCWNSKPRNRPSF  358 (904)
T ss_pred             HHHHHHHhcCCCccccchheeEEec-cC-------------------CcccccCcccCchHHHHHHHHHHhcCCCCCccH
Confidence            9999999999999877665544422 21                   112355667788899999999999999999999


Q ss_pred             HHHHcCCCCCCC
Q 005958          392 LDALRHPFLCGP  403 (667)
Q Consensus       392 ~elL~HPwf~~~  403 (667)
                      .++|.|-=+...
T Consensus       359 rqil~HldIa~p  370 (904)
T KOG4721|consen  359 RQILLHLDIASP  370 (904)
T ss_pred             HHHHHHHhhcCH
Confidence            999999555443

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=100.00  E-value=2.2e-36  Score=313.61  Aligned_cols=264  Identities=23%  Similarity=0.311  Sum_probs=197.6

Q ss_pred             eEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           88 FKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        88 y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      |++.+.||.|+||    .||+|.+..     +++.||+|.+....    ....+.+|+++++.+.      ||||+++++
T Consensus         1 y~~~~~l~~g~~~----~vy~~~~~~-----~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~------~~~i~~~~~   65 (287)
T cd07840           1 YEKIAQIGEGTYG----QVYKARNKK-----TGELVALKKIRMENEKEGFPITAIREIKLLQKLR------HPNIVRLKE   65 (287)
T ss_pred             CeeeEEeccCCCe----EEEEEEECC-----CCeEEEEEEEecccccccchHHHHHHHHHHHhcc------CCCeeehee
Confidence            7889999999999    999999997     78999999998642    2345678999999995      999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++...   ..+..++||| |+++ +|.+++....        ..+++                    ..++.++.||+.|
T Consensus        66 ~~~~~---~~~~~~lv~e-~~~~-~l~~~~~~~~--------~~~~~--------------------~~~~~i~~~i~~a  112 (287)
T cd07840          66 IVTSK---GKGSIYMVFE-YMDH-DLTGLLDSPE--------VKFTE--------------------SQIKCYMKQLLEG  112 (287)
T ss_pred             eEecC---CCCcEEEEec-cccc-cHHHHHhccC--------CCCCH--------------------HHHHHHHHHHHHH
Confidence            99822   1389999999 9986 9999987642        13443                    4577899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC----------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED----------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~----------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      |+|||++|++|+||||+||+++. ++.+||+|||++......          ...|+|||.+.+...++.++|||||||+
T Consensus       113 l~~LH~~~~~h~dl~p~nil~~~-~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~  191 (287)
T cd07840         113 LQYLHSNGILHRDIKGSNILINN-DGVLKLADFGLARPYTKRNSADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCI  191 (287)
T ss_pred             HHHHHHCCceeccCcHHHeEEcC-CCCEEEccccceeeccCCCcccccccccccccCCceeeEccccCChHHHHHHHHHH
Confidence            99999999999999999999998 899999999999866443          2569999977766678999999999999


Q ss_pred             HHHHHhCCCCChhhhh---hhhhhhccCCChhH-HHHHHH----HHhccCCCCCCCCcccccC-CCHHHHHHHHHhhhcC
Q 005958          314 MAKMVLRELMDPLIFT---KFKSFLTKGIDPSC-LREFLL----QVLNRNSSSGNTGFQILDR-NWGAGWNLLSLLLATK  384 (667)
Q Consensus       314 LyemltG~~PF~~~~~---~~~~~~~~g~~~~~-l~~~~~----~~~~~~~~~~~~~~~~~~~-~s~e~~dLI~~~L~~D  384 (667)
                      +|||++|++||.....   ....+...+.+... +.....    ................... .++++.++|.+||..|
T Consensus       192 l~el~t~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~  271 (287)
T cd07840         192 LAELFLGKPIFQGSTELEQLEKIFELCGSPTDENWPGVSKLPWFENLKPKKPYKRRLREFFKHLIDPSALDLLDKLLTLD  271 (287)
T ss_pred             HHHHHhCCCCCCCCChHHHHHHHHHHhCCCchhhccccccchhhhhccccccchhHHHHHhcccCCHHHHHHHHHHcCCC
Confidence            9999999999963221   11111111111110 000000    0000000000000011122 3789999999999999


Q ss_pred             cCCCCCHHHHHcCCCC
Q 005958          385 PSKRISCLDALRHPFL  400 (667)
Q Consensus       385 P~kRpSa~elL~HPwf  400 (667)
                      |++||++.++++||||
T Consensus       272 P~~Rp~~~~~l~~~~~  287 (287)
T cd07840         272 PKKRISADQALQHEYF  287 (287)
T ss_pred             hhhCcCHHHHhhCcCC
Confidence            9999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=100.00  E-value=2.1e-36  Score=314.33  Aligned_cols=255  Identities=15%  Similarity=0.193  Sum_probs=196.0

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      +..++|++.+.||+|+||    .||+|.+.......++..||+|.+...   .....+.+|+.+++.++      |+||+
T Consensus         3 ~~~~~~~~~~~lg~g~~g----~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~------~~~i~   72 (277)
T cd05036           3 VPRDSITLLRALGHGAFG----EVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFN------HQNIV   72 (277)
T ss_pred             CCHHHcEeeeECCCCCCC----cEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCC------CCCEe
Confidence            344789999999999999    999999875322235788999988642   22345788999999994      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++.     +.+..++||| |+.+|+|.+++...+....                      ....+++..+..++.|
T Consensus        73 ~~~~~~~-----~~~~~~lv~e-~~~g~~L~~~i~~~~~~~~----------------------~~~~~~~~~~~~~~~q  124 (277)
T cd05036          73 RLIGVSF-----ERLPRFILLE-LMAGGDLKSFLRENRPRPE----------------------RPSSLTMKDLLFCARD  124 (277)
T ss_pred             eEEEEEc-----cCCCcEEEEe-cCCCCCHHHHHHHhCCCCC----------------------CCCCCCHHHHHHHHHH
Confidence            9999988     6678899999 9999999999987541111                      1112334667889999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCC--CCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhh
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPV--DRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~--~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksD  306 (667)
                      |+.||+|||++|++||||||+||+++..  +..+||+|||+++.....           ...|+|||++. ...++.++|
T Consensus       125 i~~~l~~LH~~~ivH~dlkp~nil~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~D  203 (277)
T cd05036         125 VAKGCKYLEENHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASYYRKGGRAMLPIKWMPPEAFL-DGIFTSKTD  203 (277)
T ss_pred             HHHHHHHHHHCCEeecccchheEEEeccCCCcceEeccCccccccCCccceecCCCCCccHhhCCHHHHh-cCCcCchhH
Confidence            9999999999999999999999999862  236999999999765321           13599999664 445899999


Q ss_pred             HHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCc
Q 005958          307 MRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       307 IWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      ||||||++|||++ |..||..            .....+...+..   ..      .......++.++.+|+.+||+.||
T Consensus       204 iwslG~il~el~~~g~~pf~~------------~~~~~~~~~~~~---~~------~~~~~~~~~~~~~~~i~~cl~~~p  262 (277)
T cd05036         204 VWSFGVLLWEIFSLGYMPYPG------------RTNQEVMEFVTG---GG------RLDPPKGCPGPVYRIMTDCWQHTP  262 (277)
T ss_pred             HHHHHHHHHHHHcCCCCCCCC------------CCHHHHHHHHHc---CC------cCCCCCCCCHHHHHHHHHHcCCCc
Confidence            9999999999997 9999852            222222222211   10      112234567899999999999999


Q ss_pred             CCCCCHHHHHcC
Q 005958          386 SKRISCLDALRH  397 (667)
Q Consensus       386 ~kRpSa~elL~H  397 (667)
                      ++|||+.++++|
T Consensus       263 ~~Rps~~~vl~~  274 (277)
T cd05036         263 EDRPNFATILER  274 (277)
T ss_pred             ccCcCHHHHHHH
Confidence            999999999986

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=100.00  E-value=9e-37  Score=316.18  Aligned_cols=262  Identities=24%  Similarity=0.333  Sum_probs=200.0

Q ss_pred             eEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           88 FKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        88 y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      |++.+.||.|++|    .||+|.+..     +++.+|+|.+....    ......+|+++++.++      |+||+++++
T Consensus         1 y~~~~~i~~g~~~----~v~~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~------~~~i~~~~~   65 (283)
T cd05118           1 YQKLGKIGEGTYG----VVYKARDKL-----TGEIVAIKKIKLRFESEGIPKTALREIKLLKELN------HPNIIKLLD   65 (283)
T ss_pred             CccceeeecCCCc----eEEEEEcCC-----CCcEEEEEEeccccccchhHHHHHHHHHHHHHhc------CCCcchHHH
Confidence            6788999999999    999999987     78999999987532    2356688999999995      999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++.     ..+..++||| |+++ +|.+++....        ..+++                    ..+..++.||+.|
T Consensus        66 ~~~-----~~~~~~~v~e-~~~~-~l~~~l~~~~--------~~~~~--------------------~~~~~~~~~i~~~  110 (283)
T cd05118          66 VFR-----HKGDLYLVFE-FMDT-DLYKLIKDRQ--------RGLPE--------------------SLIKSYLYQLLQG  110 (283)
T ss_pred             hhc-----cCCCEEEEEe-ccCC-CHHHHHHhhc--------ccCCH--------------------HHHHHHHHHHHHH
Confidence            998     7789999999 9987 9999887642        13443                    4578899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      |.|||++||+|+||||+||+++. ++.++|+|||.+......         ...|+|||.+.+...++.++|||||||++
T Consensus       111 l~~LH~~~i~H~dl~p~nili~~-~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l  189 (283)
T cd05118         111 LAFCHSHGILHRDLKPENLLINT-EGVLKLADFGLARSFGSPVRPYTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIF  189 (283)
T ss_pred             HHHHHHCCeeecCcCHHHEEECC-CCcEEEeeeeeeEecCCCcccccCccCcccccCcHHHhcCCCCCchhHHHHHHHHH
Confidence            99999999999999999999998 899999999998765443         25699999776665789999999999999


Q ss_pred             HHHHhCCCCChhhh---hhhhhhhccCCChhHHHHHHHH----HhccCCCC-CCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          315 AKMVLRELMDPLIF---TKFKSFLTKGIDPSCLREFLLQ----VLNRNSSS-GNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       315 yemltG~~PF~~~~---~~~~~~~~~g~~~~~l~~~~~~----~~~~~~~~-~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      |+|++|++||+...   +........+.........+..    ........ ........+.++.++++||.+||++||.
T Consensus       190 ~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~  269 (283)
T cd05118         190 AELLSRRPLFPGKSEIDQLFKIFRTLGTPDPEVWPKFTSLARNYKFSFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPH  269 (283)
T ss_pred             HHHHhCCCCCCCCCHHHHHHHHHHHcCCCchHhcccchhhhhhhhhhhccccccCHHHhhhhhCHHHHHHHHHHhccCcc
Confidence            99999999997422   2222222222221111111100    00000000 0001123345788999999999999999


Q ss_pred             CCCCHHHHHcCCCC
Q 005958          387 KRISCLDALRHPFL  400 (667)
Q Consensus       387 kRpSa~elL~HPwf  400 (667)
                      +||++.++++||||
T Consensus       270 ~Rp~~~~ll~~~~~  283 (283)
T cd05118         270 KRITAEQALAHPYF  283 (283)
T ss_pred             cCcCHHHHhhCCCC
Confidence            99999999999997

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-37  Score=335.63  Aligned_cols=247  Identities=17%  Similarity=0.171  Sum_probs=197.3

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCC
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMY  154 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~  154 (667)
                      ..+.+..+...++..||+|.||    +||+|++..        .||||+++..    ...+.+++|+.++++-+      
T Consensus       385 ~~WeIp~~ev~l~~rIGsGsFG----tV~Rg~whG--------dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTR------  446 (678)
T KOG0193|consen  385 EEWEIPPEEVLLGERIGSGSFG----TVYRGRWHG--------DVAVKLLNVDDPTPEQLQAFKNEVAVLKKTR------  446 (678)
T ss_pred             cccccCHHHhhccceecccccc----ceeeccccc--------ceEEEEEecCCCCHHHHHHHHHHHHHHhhcc------
Confidence            4456667888899999999999    999999885        4999999852    23456799999999996      


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      |.||+-+.|++.     .... .||+. +|+|-+|+.+|...+.        +                    +.+..+.
T Consensus       447 H~NIlLFMG~~~-----~p~~-AIiTq-wCeGsSLY~hlHv~et--------k--------------------fdm~~~i  491 (678)
T KOG0193|consen  447 HENILLFMGACM-----NPPL-AIITQ-WCEGSSLYTHLHVQET--------K--------------------FDMNTTI  491 (678)
T ss_pred             hhhheeeehhhc-----CCce-eeeeh-hccCchhhhhccchhh--------h--------------------hhHHHHH
Confidence            999999999998     4344 99999 9999999999976431        2                    2246788


Q ss_pred             HHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeeccccccc-----------CCCCCCCCccccc--CCCCC
Q 005958          235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFY-----------EDGPNNSSPDSNM--DRRQM  301 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~-----------~~~~~Y~APE~l~--~~~~y  301 (667)
                      .|++||++|+.|||.++|||||||..|||+.+ ++.|||+|||++..-.           .+...|||||++.  ...+|
T Consensus       492 dIAqQiaqGM~YLHAK~IIHrDLKSnNIFl~~-~~kVkIgDFGLatvk~~w~g~~q~~qp~gsilwmAPEvIRmqd~nPf  570 (678)
T KOG0193|consen  492 DIAQQIAQGMDYLHAKNIIHRDLKSNNIFLHE-DLKVKIGDFGLATVKTRWSGEQQLEQPHGSLLWMAPEVIRMQDDNPF  570 (678)
T ss_pred             HHHHHHHHhhhhhhhhhhhhhhccccceEEcc-CCcEEEecccceeeeeeeccccccCCCccchhhhcHHHHhhcccCCC
Confidence            89999999999999999999999999999998 8999999999986321           1226799999865  45689


Q ss_pred             CchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhh
Q 005958          302 MIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLL  381 (667)
Q Consensus       302 s~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L  381 (667)
                      ++.+|||||||++|||++|..||. .....+++...|.-.-      .          ........++..++++|+..||
T Consensus       571 S~qSDVYaFGiV~YELltg~lPys-i~~~dqIifmVGrG~l------~----------pd~s~~~s~~pk~mk~Ll~~C~  633 (678)
T KOG0193|consen  571 SFQSDVYAFGIVWYELLTGELPYS-IQNRDQIIFMVGRGYL------M----------PDLSKIRSNCPKAMKRLLSDCW  633 (678)
T ss_pred             CcccchhhhhHHHHHHHhCcCCcC-CCChhheEEEeccccc------C----------ccchhhhccCHHHHHHHHHHHH
Confidence            999999999999999999999997 4444444433332200      0          0011122345569999999999


Q ss_pred             hcCcCCCCCHHHHHc
Q 005958          382 ATKPSKRISCLDALR  396 (667)
Q Consensus       382 ~~DP~kRpSa~elL~  396 (667)
                      .+++++||...+||.
T Consensus       634 ~~~~~eRP~F~~il~  648 (678)
T KOG0193|consen  634 KFDREERPLFPQLLS  648 (678)
T ss_pred             hcCcccCccHHHHHH
Confidence            999999999999886

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=100.00  E-value=8.6e-37  Score=321.49  Aligned_cols=248  Identities=18%  Similarity=0.222  Sum_probs=197.8

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      ..|+....||+|+||    .||+|.+..     +++.||+|.+...  ...+.+.+|+.+++.+      +||||+++++
T Consensus        21 ~~~~~~~~ig~g~~g----~v~~~~~~~-----~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l------~hp~i~~~~~   85 (297)
T cd06659          21 SLLENYIKIGEGSTG----IVCIAREKH-----SGRQVAVKMMDLRKQQRRELLFNEVVIMRDY------QHQNVVEMYK   85 (297)
T ss_pred             hhHHhhhhcCCCCce----eEEEEEEcC-----CCCEEEEEEEEecccchHHHHHHHHHHHHhC------CCCchhhhhh
Confidence            345556689999999    999999987     7899999998642  2334568899999998      4999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      .+.     .++..|+||| |+++++|.+++...          .+++                    ..++.++.|++.|
T Consensus        86 ~~~-----~~~~~~iv~e-~~~~~~L~~~~~~~----------~~~~--------------------~~~~~~~~qi~~~  129 (297)
T cd06659          86 SYL-----VGEELWVLME-FLQGGALTDIVSQT----------RLNE--------------------EQIATVCESVLQA  129 (297)
T ss_pred             hee-----eCCeEEEEEe-cCCCCCHHHHHhhc----------CCCH--------------------HHHHHHHHHHHHH
Confidence            998     7789999999 99999999987652          3443                    4578899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      |.|||++||+||||||+||+++. ++.+||+|||++..+..         +...|+|||.+. ...++.++|||||||++
T Consensus       130 L~~LH~~~ivH~dl~p~Nill~~-~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Dv~slG~il  207 (297)
T cd06659         130 LCYLHSQGVIHRDIKSDSILLTL-DGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVIS-RTPYGTEVDIWSLGIMV  207 (297)
T ss_pred             HHHHHhCCeecCCCCHHHeEEcc-CCcEEEeechhHhhcccccccccceecCccccCHHHHc-cCCCCchhhHHHHHHHH
Confidence            99999999999999999999998 89999999999865432         225799999554 45689999999999999


Q ss_pred             HHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHH
Q 005958          315 AKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDA  394 (667)
Q Consensus       315 yemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~el  394 (667)
                      |||++|++||..            ..+......+   .....    .........++++.++|.+||+.||++||+++++
T Consensus       208 ~el~~g~~p~~~------------~~~~~~~~~~---~~~~~----~~~~~~~~~~~~l~~~i~~~l~~~P~~Rps~~~l  268 (297)
T cd06659         208 IEMVDGEPPYFS------------DSPVQAMKRL---RDSPP----PKLKNAHKISPVLRDFLERMLTREPQERATAQEL  268 (297)
T ss_pred             HHHHhCCCCCCC------------CCHHHHHHHH---hccCC----CCccccCCCCHHHHHHHHHHhcCCcccCcCHHHH
Confidence            999999999842            1111111111   11111    1122334567899999999999999999999999


Q ss_pred             HcCCCCCCCCC
Q 005958          395 LRHPFLCGPRW  405 (667)
Q Consensus       395 L~HPwf~~~~~  405 (667)
                      ++||||.....
T Consensus       269 l~~~~~~~~~~  279 (297)
T cd06659         269 LDHPFLLQTGL  279 (297)
T ss_pred             hhChhhccCCC
Confidence            99999988763

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=100.00  E-value=2e-36  Score=310.20  Aligned_cols=242  Identities=17%  Similarity=0.200  Sum_probs=193.5

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      +.+.+|++.+.||+|+||    .||+|...       +..||+|.+......+.+.+|+.+++.++      |+||++++
T Consensus         3 ~~~~~~~~~~~lg~g~~~----~v~~~~~~-------~~~~~~k~~~~~~~~~~~~~e~~~l~~l~------~~~i~~~~   65 (256)
T cd05082           3 LNMKELKLLQTIGKGEFG----DVMLGDYR-------GNKVAVKCIKNDATAQAFLAEASVMTQLR------HSNLVQLL   65 (256)
T ss_pred             ccHHhCeeeeeecccCCC----eEEEEEEc-------CCcEEEEEeCCCchHHHHHHHHHHHHhCC------CCCeeeEE
Confidence            456899999999999999    99999764       57899999977655667889999999994      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.    ...+..++||| |+++|+|.+++.+...       ..+++                    ..+..++.||+.
T Consensus        66 ~~~~----~~~~~~~lv~e-~~~~~~L~~~~~~~~~-------~~~~~--------------------~~~~~~~~~i~~  113 (256)
T cd05082          66 GVIV----EEKGGLYIVTE-YMAKGSLVDYLRSRGR-------SVLGG--------------------DCLLKFSLDVCE  113 (256)
T ss_pred             EEEE----cCCCceEEEEE-CCCCCcHHHHHHhcCC-------CCCCH--------------------HHHHHHHHHHHH
Confidence            9765    14567899999 9999999999986431       12333                    456789999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC------CCCCCcccccCCCCCCchhhHHHHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG------PNNSSPDSNMDRRQMMIAFDMRCVGFMMAK  316 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~------~~Y~APE~l~~~~~ys~ksDIWSLGviLye  316 (667)
                      ||+|||++||+||||||+||+++. ++.+||+|||++.......      ..|+|||.+ ....++.++|||||||++||
T Consensus       114 ~l~~lH~~~i~H~dlkp~nil~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Dv~slG~i~~~  191 (256)
T cd05082         114 AMEYLEANNFVHRDLAARNVLVSE-DNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEAL-REKKFSTKSDVWSFGILLWE  191 (256)
T ss_pred             HHHHHHhCCEeccccchheEEEcC-CCcEEecCCccceeccccCCCCccceeecCHHHH-ccCCCCchhhhHHHHHHHHH
Confidence            999999999999999999999998 8999999999988654322      469999954 45568999999999999999


Q ss_pred             HHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHH
Q 005958          317 MVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDAL  395 (667)
Q Consensus       317 mlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL  395 (667)
                      |++ |++||..            .....+...+.   ....      ....+.+++.++++|.+||+.||++|||+.+++
T Consensus       192 l~~~g~~p~~~------------~~~~~~~~~~~---~~~~------~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~  250 (256)
T cd05082         192 IYSFGRVPYPR------------IPLKDVVPRVE---KGYK------MDAPDGCPPVVYDVMKQCWHLDAATRPSFLQLR  250 (256)
T ss_pred             HHhCCCCCCCC------------CCHHHHHHHHh---cCCC------CCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHH
Confidence            997 9999852            12222222221   1111      123346788999999999999999999999997


Q ss_pred             c
Q 005958          396 R  396 (667)
Q Consensus       396 ~  396 (667)
                      +
T Consensus       251 ~  251 (256)
T cd05082         251 E  251 (256)
T ss_pred             H
Confidence            5

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=100.00  E-value=1.1e-36  Score=314.58  Aligned_cols=242  Identities=21%  Similarity=0.270  Sum_probs=198.8

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-----hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ++|++.+.||.|+||    .||+|.+..     +++.||+|++...     ...+.+.+|+++++++.     +||||++
T Consensus         1 ~~y~~~~~lg~g~~~----~vy~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~-----~~~~i~~   66 (280)
T cd05581           1 DDFKFGKIIGEGSFS----TVVLAKEKE-----TNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLN-----GHPGIIK   66 (280)
T ss_pred             CCceEeeeecCCCce----EEEEEEEcC-----CCCEEEEEEechHhccchHHHHHHHHHHHHHHhcc-----cCCCchh
Confidence            479999999999999    999999987     7999999998752     22355688999999985     5999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     ..+..++||| ++.+++|.+++.+.+         .+++                    ..++.++.|+
T Consensus        67 ~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~l~~--------------------~~~~~i~~ql  111 (280)
T cd05581          67 LYYTFQ-----DEENLYFVLE-YAPNGELLQYIRKYG---------SLDE--------------------KCTRFYAAEI  111 (280)
T ss_pred             HHHHhc-----CCceEEEEEc-CCCCCcHHHHHHHcC---------CCCH--------------------HHHHHHHHHH
Confidence            999998     7789999999 998889999998754         3443                    5678899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------------------------CCCCCC
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------------------------GPNNSS  291 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------------------------~~~Y~A  291 (667)
                      +.||.|||++|++|+||+|+||+++. ++.++|+|||++......                             ...|+|
T Consensus       112 ~~~l~~Lh~~~~~H~dl~~~ni~i~~-~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (280)
T cd05581         112 LLALEYLHSKGIIHRDLKPENILLDK-DMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVS  190 (280)
T ss_pred             HHHHHHHHHCCeeecCCCHHHeEECC-CCCEEecCCccccccCCccccccCCCCCccccccccccccccccccCCccccC
Confidence            99999999999999999999999998 899999999998765432                             256899


Q ss_pred             cccccCCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCH
Q 005958          292 PDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWG  371 (667)
Q Consensus       292 PE~l~~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~  371 (667)
                      ||.+. ...++.++|||||||++|+|++|+.||....            ....   +......       .......+++
T Consensus       191 Pe~~~-~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~------------~~~~---~~~~~~~-------~~~~~~~~~~  247 (280)
T cd05581         191 PELLN-EKPAGKSSDLWALGCIIYQMLTGKPPFRGSN------------EYLT---FQKILKL-------EYSFPPNFPP  247 (280)
T ss_pred             HHHhC-CCCCChhhhHHHHHHHHHHHHhCCCCCCCcc------------HHHH---HHHHHhc-------CCCCCCccCH
Confidence            99554 4558899999999999999999999985221            1111   1111111       1223345678


Q ss_pred             HHHHHHHHhhhcCcCCCCCH----HHHHcCCCC
Q 005958          372 AGWNLLSLLLATKPSKRISC----LDALRHPFL  400 (667)
Q Consensus       372 e~~dLI~~~L~~DP~kRpSa----~elL~HPwf  400 (667)
                      .+.+||.+||+.||++||++    +++|+||||
T Consensus       248 ~~~~li~~~l~~~p~~R~~~~~~~~~ll~~~~~  280 (280)
T cd05581         248 DAKDLIEKLLVLDPQDRLGVNEGYDELKAHPFF  280 (280)
T ss_pred             HHHHHHHHHhcCCHhhCCCcccCHHHHhcCCCC
Confidence            99999999999999999999    999999998

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=100.00  E-value=3.3e-36  Score=324.00  Aligned_cols=269  Identities=19%  Similarity=0.268  Sum_probs=202.3

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      .++|++.+.||+|+||    .||+|.+..     +++.||+|++....    ..+...+|+.++++++      ||||++
T Consensus        16 ~~~y~~~~~lg~G~~g----~v~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~------h~~iv~   80 (345)
T cd07877          16 PERYQNLSPVGSGAYG----SVCAAFDTK-----TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMK------HENVIG   80 (345)
T ss_pred             cCceEEEEEeeecCCe----EEEEEEEcC-----CCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcC------CCcccc
Confidence            4889999999999999    999999987     78999999987521    2345678999999995      999999


Q ss_pred             EEEEEEeccc-CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          161 VHGYVSSHTT-SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       161 l~~~~~~~~~-~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      +++++..... ......|++++ ++++ +|.+++...          .+++                    ..++.++.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~lv~~-~~~~-~L~~~~~~~----------~l~~--------------------~~~~~i~~q  128 (345)
T cd07877          81 LLDVFTPARSLEEFNDVYLVTH-LMGA-DLNNIVKCQ----------KLTD--------------------DHVQFLIYQ  128 (345)
T ss_pred             eeeeeeecccccccccEEEEeh-hccc-CHHHHHhcC----------CCCH--------------------HHHHHHHHH
Confidence            9999863211 12346889999 8755 999888643          3444                    456789999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      |+.||+|||++||+||||||+||+++. ++.+||+|||++......      ...|+|||.+.+...++.++||||+||+
T Consensus       129 i~~aL~~LH~~~ivH~dlkp~NIll~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~i  207 (345)
T cd07877         129 ILRGLKYIHSADIIHRDLKPSNLAVNE-DCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCI  207 (345)
T ss_pred             HHHHHHHHHHCCeeecCCChHHEEEcC-CCCEEEecccccccccccccccccCCCccCHHHHhCccCCCchhhHHHHHHH
Confidence            999999999999999999999999998 899999999999765433      3579999977665678999999999999


Q ss_pred             HHHHHhCCCCChhhh---hhhhhhhccCCChhHHHHHH--------HHHhccCCCCCCCCc-ccccCCCHHHHHHHHHhh
Q 005958          314 MAKMVLRELMDPLIF---TKFKSFLTKGIDPSCLREFL--------LQVLNRNSSSGNTGF-QILDRNWGAGWNLLSLLL  381 (667)
Q Consensus       314 LyemltG~~PF~~~~---~~~~~~~~~g~~~~~l~~~~--------~~~~~~~~~~~~~~~-~~~~~~s~e~~dLI~~~L  381 (667)
                      +|+|++|++||+...   ....+....+..+..+...+        ...+...+.   ..+ ......++++++||.+||
T Consensus       208 l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~li~~~L  284 (345)
T cd07877         208 MAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPK---MNFANVFIGANPLAVDLLEKML  284 (345)
T ss_pred             HHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHhhcccHhHHHHHHHhcccCC---cchhhhcCCCCHHHHHHHHHHc
Confidence            999999999996321   11111222222222211110        011111000   001 112246889999999999


Q ss_pred             hcCcCCCCCHHHHHcCCCCCCCC
Q 005958          382 ATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       382 ~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      +.||.+||++.++++||||++..
T Consensus       285 ~~dp~~R~t~~e~l~h~~f~~~~  307 (345)
T cd07877         285 VLDSDKRITAAQALAHAYFAQYH  307 (345)
T ss_pred             CCChhhcCCHHHHhcChhhhhcC
Confidence            99999999999999999999754

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=100.00  E-value=1e-36  Score=326.25  Aligned_cols=270  Identities=22%  Similarity=0.326  Sum_probs=204.6

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      .++|++.+.||+|+||    .||+|.+..     +++.||+|++...    .......+|+.+++++.     +||||++
T Consensus         6 ~~~y~~~~~lg~g~~~----~v~~~~~~~-----~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~ni~~   71 (337)
T cd07852           6 LRKYEILQKLGKGAYG----IVWKAIDRR-----TKEVVALKKIFDAFRNATDAQRTFREIMFLQELG-----DHPNIVK   71 (337)
T ss_pred             hhHHHHhHhhcCCCCe----eEEEEEEcC-----CCeEEEEEeeccccCcchhhhhhhHHHHHHHHhc-----CCCCccc
Confidence            4789999999999999    999999987     7899999988541    22344678999999994     4999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++...   +...+|+||| |+++ +|.+++...          .+++                    ..++.++.||
T Consensus        72 ~~~~~~~~---~~~~~~lv~e-~~~~-~L~~~~~~~----------~~~~--------------------~~~~~i~~qi  116 (337)
T cd07852          72 LLNVIKAE---NDKDIYLVFE-YMET-DLHAVIRAN----------ILED--------------------VHKRYIMYQL  116 (337)
T ss_pred             eeeeeccC---CCceEEEEec-cccc-CHHHHHhcC----------CCCH--------------------HHHHHHHHHH
Confidence            99998632   4557899999 9986 999998753          2333                    3467799999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------------CCCCCCcccccCCCCCCchhh
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------------GPNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------------~~~Y~APE~l~~~~~ys~ksD  306 (667)
                      +.||.|||++||+||||||+||+++. ++.+||+|||++......              ...|+|||.+.+...++.++|
T Consensus       117 ~~~L~~LH~~~i~H~dl~p~nill~~-~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sD  195 (337)
T cd07852         117 LKALKYIHSGNVIHRDLKPSNILLNS-DCRVKLADFGLARSLSELEENPENPVLTDYVATRWYRAPEILLGSTRYTKGVD  195 (337)
T ss_pred             HHHHHHHHHCCeecCCCCHHHEEEcC-CCcEEEeeccchhccccccccccCcchhcccccccccCceeeeccccccccch
Confidence            99999999999999999999999998 899999999999755332              245999998777777899999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhh---hhhhhhhccCCChhHHHHHH-----HHHhccCCCCC-CCCcccccCCCHHHHHHH
Q 005958          307 MRCVGFMMAKMVLRELMDPLIF---TKFKSFLTKGIDPSCLREFL-----LQVLNRNSSSG-NTGFQILDRNWGAGWNLL  377 (667)
Q Consensus       307 IWSLGviLyemltG~~PF~~~~---~~~~~~~~~g~~~~~l~~~~-----~~~~~~~~~~~-~~~~~~~~~~s~e~~dLI  377 (667)
                      ||||||++|+|++|++||+...   ...+.....+.........+     ...+....... .......+.++.++.+||
T Consensus       196 i~slG~~l~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  275 (337)
T cd07852         196 MWSVGCILGEMLLGKPLFPGTSTLNQLEKIIEVIGPPSAEDIESIKSPFAATMLDSLPSRPRKPLDELLPKASDDALDLL  275 (337)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHHHhhhHHHhhhhcccccccchhhhccCCCHHHHHHH
Confidence            9999999999999999997321   22222222233222111111     11111100000 111123345788999999


Q ss_pred             HHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          378 SLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       378 ~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      .+||+.||++|||+.++++||||+...
T Consensus       276 ~~~l~~~P~~Rps~~~il~~~~~~~~~  302 (337)
T cd07852         276 KKLLVFNPNKRLTAEEALEHPYVAQFH  302 (337)
T ss_pred             HHhccCCcccccCHHHHhhChhhhhhc
Confidence            999999999999999999999998764

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=100.00  E-value=8.7e-38  Score=342.01  Aligned_cols=241  Identities=13%  Similarity=0.155  Sum_probs=200.2

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      ..+.|++...+|.|+|+    .|-.|.+..     +++.+++|++.+.  ..+..+|+.++....     +||||+++++
T Consensus       320 ~~~~y~~~~~~~~gs~s----~~~~~~~~~-----t~~~~~vkii~~~--~~~~~~e~~~~~~~~-----~h~niv~~~~  383 (612)
T KOG0603|consen  320 FTESYEFREELGEGSFS----AVKYCESSP-----TDQEPAVKIISKR--ADDNQDEIPISLLVR-----DHPNIVKSHD  383 (612)
T ss_pred             cchhhccccccCCCCcc----ceeeeeccc-----cccchhheecccc--ccccccccchhhhhc-----CCCcceeecc
Confidence            35789999999999999    999999998     8999999999765  334567888888887     7999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++.     +..+.|+||| ++.||-|.+.|....          ...                    ..+..|++||+.|
T Consensus       384 v~~-----~~~~~~~v~e-~l~g~ell~ri~~~~----------~~~--------------------~e~~~w~~~lv~A  427 (612)
T KOG0603|consen  384 VYE-----DGKEIYLVME-LLDGGELLRRIRSKP----------EFC--------------------SEASQWAAELVSA  427 (612)
T ss_pred             eec-----CCceeeeeeh-hccccHHHHHHHhcc----------hhH--------------------HHHHHHHHHHHHH
Confidence            999     8899999999 999988888887643          111                    2456799999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--C----CCCCCcccccCCCCCCchhhHHHHHHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--G----PNNSSPDSNMDRRQMMIAFDMRCVGFMMAKM  317 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--~----~~Y~APE~l~~~~~ys~ksDIWSLGviLyem  317 (667)
                      +.|||++|||||||||+|||++.+.++++|+|||.++.....  .    ..|.|||++. ...|++++||||||++||+|
T Consensus       428 v~~LH~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~~~tp~~t~~y~APEvl~-~~~yt~acD~WSLGvlLy~M  506 (612)
T KOG0603|consen  428 VDYLHEQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSELERSCDTPALTLQYVAPEVLA-IQEYTEACDWWSLGVLLYEM  506 (612)
T ss_pred             HHHHHhcCeeecCCChhheeecCCCCcEEEEEechhhhCchhhcccchhhcccChhhhc-cCCCCcchhhHHHHHHHHHH
Confidence            999999999999999999999533899999999999887766  3    5688999555 77899999999999999999


Q ss_pred             HhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcC
Q 005958          318 VLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRH  397 (667)
Q Consensus       318 ltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~H  397 (667)
                      ++|+.||..           +....++..   .+...         +....+|++++|||++||+.||.+|+++.+++.|
T Consensus       507 L~G~tp~~~-----------~P~~~ei~~---~i~~~---------~~s~~vS~~AKdLl~~LL~~dP~~Rl~~~~i~~h  563 (612)
T KOG0603|consen  507 LTGRTLFAA-----------HPAGIEIHT---RIQMP---------KFSECVSDEAKDLLQQLLQVDPALRLGADEIGAH  563 (612)
T ss_pred             HhCCCcccc-----------CCchHHHHH---hhcCC---------ccccccCHHHHHHHHHhccCChhhCcChhhhccC
Confidence            999999852           211111211   11111         1125789999999999999999999999999999


Q ss_pred             CCC
Q 005958          398 PFL  400 (667)
Q Consensus       398 Pwf  400 (667)
                      |||
T Consensus       564 ~w~  566 (612)
T KOG0603|consen  564 PWF  566 (612)
T ss_pred             cch
Confidence            999

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=100.00  E-value=7.4e-37  Score=328.67  Aligned_cols=272  Identities=21%  Similarity=0.301  Sum_probs=204.4

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      .++|++.+.||+|+||    .||+|++..     +++.||||++...    .....+.+|+.+++.+.      ||||++
T Consensus        14 ~~~y~~~~~ig~g~~g----~vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~------h~~iv~   78 (343)
T cd07851          14 PDRYQNLSPVGSGAYG----QVCSAFDTK-----TGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMD------HENVIG   78 (343)
T ss_pred             cCceEEEEEeccCCce----EEEEEEECC-----CCcEEEEEecccccchhhHHHHHHHHHHHHHhcc------CCCHHH
Confidence            4789999999999999    999999987     7899999998642    12345678999999994      999999


Q ss_pred             EEEEEEeccc-CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          161 VHGYVSSHTT-SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       161 l~~~~~~~~~-~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      +++++..... .....+++|+| |+++ +|.+++...          .+++                    ..++.++.|
T Consensus        79 ~~~~~~~~~~~~~~~~~~lv~e-~~~~-~L~~~~~~~----------~l~~--------------------~~~~~~~~q  126 (343)
T cd07851          79 LLDVFTPASSLEDFQDVYLVTH-LMGA-DLNNIVKCQ----------KLSD--------------------DHIQFLVYQ  126 (343)
T ss_pred             HHHHhhccccccccccEEEEEe-cCCC-CHHHHHhcC----------CCCH--------------------HHHHHHHHH
Confidence            9998863211 12345899999 8866 999998752          3554                    457789999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      |+.||+|||++||+||||||+||+++. ++.+||+|||++......      ...|+|||.+.+...++.++|||||||+
T Consensus       127 l~~aL~~LH~~gi~H~dlkp~Nill~~-~~~~kL~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~  205 (343)
T cd07851         127 ILRGLKYIHSAGIIHRDLKPSNIAVNE-DCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCI  205 (343)
T ss_pred             HHHHHHHHHHCCeecCCCCHHHeEECC-CCCEEEccccccccccccccCCcccccccCHHHHhCCCCCCchHhHHHHHHH
Confidence            999999999999999999999999998 899999999999865433      3569999977665678999999999999


Q ss_pred             HHHHHhCCCCChhhh---hhhhhhhccCCChhHHHHHHH-----HHhccCCCCCCCCc-ccccCCCHHHHHHHHHhhhcC
Q 005958          314 MAKMVLRELMDPLIF---TKFKSFLTKGIDPSCLREFLL-----QVLNRNSSSGNTGF-QILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       314 LyemltG~~PF~~~~---~~~~~~~~~g~~~~~l~~~~~-----~~~~~~~~~~~~~~-~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      +|+|++|++||+...   ....+....+.++..+...+.     ..+..........+ ......++++.+||.+||+.|
T Consensus       206 l~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~  285 (343)
T cd07851         206 MAELLTGKTLFPGSDHIDQLKRIMNLVGTPDEELLQKISSESARNYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLD  285 (343)
T ss_pred             HHHHHhCCCCCCCCChHHHHHHHHHhcCCCCHHHHhhccchhHHHHHHhccccCCCCHHHHhccCCHHHHHHHHHhCCCC
Confidence            999999999997322   112222223333322211110     00000000001111 122346889999999999999


Q ss_pred             cCCCCCHHHHHcCCCCCCCC
Q 005958          385 PSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       385 P~kRpSa~elL~HPwf~~~~  404 (667)
                      |++|||+.++++||||+...
T Consensus       286 P~~Rpt~~ell~h~~~~~~~  305 (343)
T cd07851         286 PDKRITAAEALAHPYLAEYH  305 (343)
T ss_pred             hhhCCCHHHHhcCCCccccC
Confidence            99999999999999998754

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=100.00  E-value=2.1e-36  Score=309.10  Aligned_cols=233  Identities=15%  Similarity=0.185  Sum_probs=185.6

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEec
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSH  168 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~  168 (667)
                      +.||+|+||    .||+|++..     +++.||+|.+...   .....+.+|+++++.+      +||||+++++++.  
T Consensus         1 ~~lg~g~~g----~vy~~~~~~-----~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~--   63 (252)
T cd05084           1 ERIGRGNFG----EVFSGRLRA-----DNTPVAVKSCRETLPPDLKAKFLQEARILKQY------SHPNIVRLIGVCT--   63 (252)
T ss_pred             CccCcccCc----cEEEEEEec-----CCceEEEEecCccCCHHHHHHHHHHHHHHHhC------CCCCcceEEEEEc--
Confidence            469999999    999999987     7899999987642   2335678999999999      4999999999998  


Q ss_pred             ccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 005958          169 TTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLH  248 (667)
Q Consensus       169 ~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLH  248 (667)
                         .....++||| |+++++|.+++...+        ..+++                    ..++.++.|++.||.|||
T Consensus        64 ---~~~~~~lv~e-~~~~~~L~~~~~~~~--------~~~~~--------------------~~~~~~~~qi~~~L~~lH  111 (252)
T cd05084          64 ---QKQPIYIVME-LVQGGDFLTFLRTEG--------PRLKV--------------------KELIQMVENAAAGMEYLE  111 (252)
T ss_pred             ---CCCCeEEEEe-eccCCcHHHHHHhCC--------CCCCH--------------------HHHHHHHHHHHHHHHHHH
Confidence               7788999999 999999999997542        12343                    457889999999999999


Q ss_pred             HCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhhHHHHHHHHHHH
Q 005958          249 SHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKM  317 (667)
Q Consensus       249 s~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksDIWSLGviLyem  317 (667)
                      ++||+||||||+|||++. ++.+||+|||++......           ...|+|||.+ ....++.++|||||||++|||
T Consensus       112 ~~~i~H~dl~p~nil~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Dv~slG~il~e~  189 (252)
T cd05084         112 SKHCIHRDLAARNCLVTE-KNVLKISDFGMSREEEDGVYASTGGMKQIPVKWTAPEAL-NYGRYSSESDVWSFGILLWEA  189 (252)
T ss_pred             hCCccccccchheEEEcC-CCcEEECccccCcccccccccccCCCCCCceeecCchhh-cCCCCChHHHHHHHHHHHHHH
Confidence            999999999999999998 889999999998754322           1359999955 445589999999999999999


Q ss_pred             Hh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHc
Q 005958          318 VL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALR  396 (667)
Q Consensus       318 lt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~  396 (667)
                      ++ |.+||...            ........+...         .........+.++.+|+.+||+.||++|||+.++++
T Consensus       190 ~~~~~~p~~~~------------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~  248 (252)
T cd05084         190 FSLGAVPYANL------------SNQQTREAIEQG---------VRLPCPELCPDAVYRLMERCWEYDPGQRPSFSTVHQ  248 (252)
T ss_pred             HhCCCCCcccc------------CHHHHHHHHHcC---------CCCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            97 88887421            111222221111         011223456789999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.9e-36  Score=312.05  Aligned_cols=257  Identities=16%  Similarity=0.217  Sum_probs=198.5

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      ++..++|++.+.||+|+||    .||+|.+.......++..||+|.+....   ....+.+|+.+++.+      +||||
T Consensus         2 ~~~~~~~~~~~~lg~g~~g----~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~------~~~~i   71 (277)
T cd05032           2 ELPREKITLIRELGQGSFG----MVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEF------NCHHV   71 (277)
T ss_pred             ccchHHeeEEeEecCCCCc----eEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhC------CCCce
Confidence            4566899999999999999    9999998764333456899999987532   234567899999998      49999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      +++++++.     .....++||| |+++|+|.+++.........                   ......++...+..++.
T Consensus        72 ~~~~~~~~-----~~~~~~~v~e-~~~~~~L~~~l~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~  126 (277)
T cd05032          72 VRLLGVVS-----TGQPTLVVME-LMAKGDLKSYLRSRRPEAEN-------------------NPGLGPPTLQKFIQMAA  126 (277)
T ss_pred             eEEEEEEc-----CCCCcEEEEe-cCCCCCHHHHHHhcccchhh-------------------ccCCCCCCHHHHHHHHH
Confidence            99999998     7788999999 99999999999764311100                   00011233456788999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhhH
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksDI  307 (667)
                      ||+.||.|||++||+||||||+|||++. ++.+||+|||+++.....           ...|+|||.+. ...++.++||
T Consensus       127 ~i~~~l~~lH~~~i~H~di~p~nill~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di  204 (277)
T cd05032         127 EIADGMAYLAAKKFVHRDLAARNCMVAE-DLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLK-DGVFTTKSDV  204 (277)
T ss_pred             HHHHHHHHHHhCCccccccChheEEEcC-CCCEEECCcccchhhccCcccccCCCCCccccccCHHHHh-cCCCCcccch
Confidence            9999999999999999999999999998 899999999998754322           14699999654 4558999999


Q ss_pred             HHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          308 RCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       308 WSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      |||||++|||++ |.+||.            +.......+.+.   ...      ........+.++.+||.+||+.+|+
T Consensus       205 ~slG~il~el~t~g~~p~~------------~~~~~~~~~~~~---~~~------~~~~~~~~~~~~~~li~~~l~~~p~  263 (277)
T cd05032         205 WSFGVVLWEMATLAEQPYQ------------GLSNEEVLKFVI---DGG------HLDLPENCPDKLLELMRMCWQYNPK  263 (277)
T ss_pred             HHHHHHHHHhhccCCCCCc------------cCCHHHHHHHHh---cCC------CCCCCCCCCHHHHHHHHHHcCCChh
Confidence            999999999998 999885            222222222221   110      1122344678999999999999999


Q ss_pred             CCCCHHHHHc
Q 005958          387 KRISCLDALR  396 (667)
Q Consensus       387 kRpSa~elL~  396 (667)
                      +|||+.++++
T Consensus       264 ~Rpt~~~l~~  273 (277)
T cd05032         264 MRPTFLEIVS  273 (277)
T ss_pred             hCCCHHHHHH
Confidence            9999999986

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=100.00  E-value=3.3e-36  Score=313.53  Aligned_cols=263  Identities=15%  Similarity=0.185  Sum_probs=197.8

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      +.+++|++.+.||+|+||    +||+|.+...+ ...++.||+|.+....   ....+.+|+.+++.++      ||||+
T Consensus         2 ~~~~~~~~~~~lg~g~~g----~vy~~~~~~~~-~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~------h~niv   70 (283)
T cd05090           2 LPLSAVRFMEELGECAFG----KIYKGHLYLPG-MDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELH------HPNIV   70 (283)
T ss_pred             CChhhceeeeeccccCCc----ceEEEEEecCC-CCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCC------CCCee
Confidence            356889999999999999    99999974321 1256899999997522   2245688999999995      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++.     .....|+||| |+++|+|.+++...........  ..          ...+.....++...+..++.|
T Consensus        71 ~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~~~~~~~~--~~----------~~~~~~~~~~~~~~~~~i~~~  132 (283)
T cd05090          71 CLLGVVT-----QEQPVCMLFE-YLNQGDLHEFLIMRSPHSDVGC--SS----------DEDGTVKSSLDHGDFLHIAIQ  132 (283)
T ss_pred             eEEEEEe-----cCCceEEEEE-cCCCCcHHHHHHhcCCCCcccc--cc----------ccccccccccCHHHHHHHHHH
Confidence            9999998     7788999999 9999999999975431100000  00          000111123445678889999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-----------CCCCCcccccCCCCCCchhhHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-----------PNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-----------~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      |+.||.|||++||+||||||+|||++. ++.+||+|||++.......           ..|+|||.+. ...++.++|||
T Consensus       133 i~~al~~lH~~~i~H~dlkp~nili~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Dv~  210 (283)
T cd05090         133 IAAGMEYLSSHFFVHKDLAARNILIGE-QLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIM-YGKFSSDSDIW  210 (283)
T ss_pred             HHHHHHHHHhcCeehhccccceEEEcC-CCcEEeccccccccccCCcceecccCCCccceecChHHhc-cCCCCchhhhH
Confidence            999999999999999999999999998 8899999999997653221           3599999654 45589999999


Q ss_pred             HHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          309 CVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       309 SLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      ||||++|||++ |.+||.            +..+....+.+..   ..      ..+....+++++++++.+||+.||++
T Consensus       211 slG~il~el~~~g~~p~~------------~~~~~~~~~~~~~---~~------~~~~~~~~~~~~~~li~~cl~~~p~~  269 (283)
T cd05090         211 SFGVVLWEIFSFGLQPYY------------GFSNQEVIEMVRK---RQ------LLPCSEDCPPRMYSLMTECWQEGPSR  269 (283)
T ss_pred             HHHHHHHHHHcCCCCCCC------------CCCHHHHHHHHHc---CC------cCCCCCCCCHHHHHHHHHHcccCccc
Confidence            99999999998 998884            2222222222211   11      11233457789999999999999999


Q ss_pred             CCCHHHHHcC
Q 005958          388 RISCLDALRH  397 (667)
Q Consensus       388 RpSa~elL~H  397 (667)
                      ||++.+++++
T Consensus       270 Rp~~~~i~~~  279 (283)
T cd05090         270 RPRFKDIHTR  279 (283)
T ss_pred             CcCHHHHHHH
Confidence            9999999875

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=100.00  E-value=4.8e-36  Score=307.58  Aligned_cols=245  Identities=21%  Similarity=0.308  Sum_probs=197.2

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      +|++.+.||+|+||    .||+|.+..     +++.||+|.++...    ..+.+.+|+++++.++      |+||++++
T Consensus         1 ~y~~~~~lg~G~~~----~v~~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~------~~~i~~~~   65 (264)
T cd06626           1 RWQRGNKIGGGTFG----KVYTAVNLD-----TGELMAVKEIRIQDNDPKTIKEIADEMKVLELLK------HPNLVKYY   65 (264)
T ss_pred             CceeeeEeecCCCc----EEEEEEECC-----CCcEEEEEEEECcccchHHHHHHHHHHHHHHhCC------CCChhhee
Confidence            58999999999999    999999987     78999999987532    3456789999999994      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +.+.     ..+.+++|+| |+++++|.+++....         .+++                    ..++.++.|++.
T Consensus        66 ~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~~---------~~~~--------------------~~~~~i~~~i~~  110 (264)
T cd06626          66 GVEV-----HREKVYIFME-YCSGGTLEELLEHGR---------ILDE--------------------HVIRVYTLQLLE  110 (264)
T ss_pred             eeEe-----cCCEEEEEEe-cCCCCcHHHHHhhcC---------CCCh--------------------HHHHHHHHHHHH
Confidence            9988     7789999999 999999999998643         2333                    456779999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-------------CCCCCCcccccCCC--CCCchhhH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-------------GPNNSSPDSNMDRR--QMMIAFDM  307 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-------------~~~Y~APE~l~~~~--~ys~ksDI  307 (667)
                      ||.|||++||+|+||+|+||+++. ++.+||+|||++......             ...|+|||.+.+..  .++.++||
T Consensus       111 ~l~~lh~~~i~H~dl~~~nil~~~-~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv  189 (264)
T cd06626         111 GLAYLHSHGIVHRDIKPANIFLDH-NGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADI  189 (264)
T ss_pred             HHHHHHHCCcccCCCCHHHEEECC-CCCEEEcccccccccCCCCCcccccccCCcCCcCccChhhccCCCCCCCCcccch
Confidence            999999999999999999999998 899999999998765422             25799999665433  37899999


Q ss_pred             HHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          308 RCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       308 WSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      |||||++|+|++|+.||.....           ....   ........    ...++....+++.+.+||.+||+.||++
T Consensus       190 ~s~G~il~~l~~g~~pf~~~~~-----------~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~li~~~l~~~p~~  251 (264)
T cd06626         190 WSLGCVVLEMATGKRPWSELDN-----------EFQI---MFHVGAGH----KPPIPDSLQLSPEGKDFLDRCLESDPKK  251 (264)
T ss_pred             HHHHHHHHHHHhCCCCccCCcc-----------hHHH---HHHHhcCC----CCCCCcccccCHHHHHHHHHHccCCccc
Confidence            9999999999999999853211           1111   11111110    1112223345789999999999999999


Q ss_pred             CCCHHHHHcCCCC
Q 005958          388 RISCLDALRHPFL  400 (667)
Q Consensus       388 RpSa~elL~HPwf  400 (667)
                      |||+.+++.|||+
T Consensus       252 R~~~~~i~~~~~~  264 (264)
T cd06626         252 RPTASELLQHPFV  264 (264)
T ss_pred             CCCHHHHhcCCCC
Confidence            9999999999996

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=1.6e-36  Score=321.85  Aligned_cols=246  Identities=15%  Similarity=0.130  Sum_probs=192.5

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      +...+|++.+.||+|+||    .||+|++...+ ......||+|.++..   ...+.+.+|+.+++.+.      ||||+
T Consensus         4 ~~~~~f~~~~~lg~G~~g----~Vy~~~~~~~~-~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~------h~niv   72 (316)
T cd05108           4 LKETEFKKIKVLGSGAFG----TVYKGLWIPEG-EKVKIPVAIKELREATSPKANKEILDEAYVMASVD------NPHVC   72 (316)
T ss_pred             cchhhceeeeeeecCCCc----eEEEEEEecCC-CccceeEEEEeccccCCHHHHHHHHHHHHHHHhCC------CCCCC
Confidence            456789999999999999    99999987521 112345999998642   23456788999999994      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++.     . ...++|+| |+.+|+|.+++....        ..+++                    ..+..++.|
T Consensus        73 ~~~g~~~-----~-~~~~~v~e-~~~~g~l~~~l~~~~--------~~~~~--------------------~~~~~~~~q  117 (316)
T cd05108          73 RLLGICL-----T-STVQLITQ-LMPFGCLLDYVREHK--------DNIGS--------------------QYLLNWCVQ  117 (316)
T ss_pred             eEEEEEc-----C-CCceeeee-cCCCCCHHHHHHhcc--------ccCCH--------------------HHHHHHHHH
Confidence            9999987     3 35789999 999999999998643        12332                    456789999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-----------CCCCCcccccCCCCCCchhhHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-----------PNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-----------~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      |+.||+|||++||+||||||+|||++. ++.+||+|||+++......           ..|+|||.+ ....++.++|||
T Consensus       118 i~~~L~~LH~~~iiH~dlkp~Nill~~-~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~apE~~-~~~~~~~~~Di~  195 (316)
T cd05108         118 IAKGMNYLEERRLVHRDLAARNVLVKT-PQHVKITDFGLAKLLGADEKEYHAEGGKVPIKWMALESI-LHRIYTHQSDVW  195 (316)
T ss_pred             HHHHHHHHHhcCeeccccchhheEecC-CCcEEEccccccccccCCCcceeccCCccceeecChHHh-ccCCCCchhhhH
Confidence            999999999999999999999999998 8899999999998654321           359999955 455689999999


Q ss_pred             HHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          309 CVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       309 SLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      ||||++|||++ |.+||.            +.+...+...+...         ...+..+.++.++.+++.+||..||++
T Consensus       196 slGv~l~el~t~g~~p~~------------~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~li~~cl~~~p~~  254 (316)
T cd05108         196 SYGVTVWELMTFGSKPYD------------GIPASEISSILEKG---------ERLPQPPICTIDVYMIMVKCWMIDADS  254 (316)
T ss_pred             HHHHHHHHHHcCCCCCCC------------CCCHHHHHHHHhCC---------CCCCCCCCCCHHHHHHHHHHccCChhh
Confidence            99999999997 999984            22232332222111         112223456789999999999999999


Q ss_pred             CCCHHHHHcC
Q 005958          388 RISCLDALRH  397 (667)
Q Consensus       388 RpSa~elL~H  397 (667)
                      ||++.+++.+
T Consensus       255 Rps~~~l~~~  264 (316)
T cd05108         255 RPKFRELIIE  264 (316)
T ss_pred             CcCHHHHHHH
Confidence            9999999976

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=100.00  E-value=6e-36  Score=319.98  Aligned_cols=268  Identities=20%  Similarity=0.273  Sum_probs=204.1

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      .++|++.+.||.|+||    .||+|.+..     +++.||||++.+.    ...+.+.+|+++++.++      ||||++
T Consensus         9 ~~~y~~~~~ig~g~~g----~v~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~------hpniv~   73 (328)
T cd07856           9 TNRYVDLQPVGMGAFG----LVCSARDQL-----TGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLR------HENIIS   73 (328)
T ss_pred             ccceEEEEeecccCCe----EEEEEEECC-----CCCEEEEEEecccccccchhHHHHHHHHHHHhcC------CCCeee
Confidence            4789999999999999    999999998     7999999987642    23355678999999995      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++..    .....|+||| |+++ +|.++++..          .+++                    ..+..++.||
T Consensus        74 ~~~~~~~----~~~~~~lv~e-~~~~-~L~~~~~~~----------~~~~--------------------~~~~~~~~ql  117 (328)
T cd07856          74 LSDIFIS----PLEDIYFVTE-LLGT-DLHRLLTSR----------PLEK--------------------QFIQYFLYQI  117 (328)
T ss_pred             EeeeEec----CCCcEEEEee-hhcc-CHHHHHhcC----------CCCH--------------------HHHHHHHHHH
Confidence            9999872    3567899999 9866 999888743          3333                    4567799999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC------CCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED------GPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      +.||.|||++||+||||||.||+++. ++.+||+|||.+......      ...|+|||.+.+...++.++|||||||++
T Consensus       118 ~~aL~~LH~~~iiH~dl~p~Nili~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il  196 (328)
T cd07856         118 LRGLKYVHSAGVVHRDLKPSNILINE-NCDLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIF  196 (328)
T ss_pred             HHHHHHHHhCCcccCCCCHHHEeECC-CCCEEeCccccccccCCCcCCCcccccccCceeeeccCCcCcHHHHHHHHHHH
Confidence            99999999999999999999999998 899999999999755432      35799999766656789999999999999


Q ss_pred             HHHHhCCCCChhhhh---hhhhhhccCCChhHHHHHHH-----HHhccCCCCCC-CCcccccCCCHHHHHHHHHhhhcCc
Q 005958          315 AKMVLRELMDPLIFT---KFKSFLTKGIDPSCLREFLL-----QVLNRNSSSGN-TGFQILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       315 yemltG~~PF~~~~~---~~~~~~~~g~~~~~l~~~~~-----~~~~~~~~~~~-~~~~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      |+|++|++||+....   ........|.++.++.+...     ..+........ ......+..++++.++|.+||+.||
T Consensus       197 ~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P  276 (328)
T cd07856         197 AEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVINTICSENTLRFVQSLPKREPVPFSEKFKNADPSAIDLLEKMLVFDP  276 (328)
T ss_pred             HHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhccchhhHHHHhhccccCCCcHHHHcCCCCHHHHHHHHHHcCCCh
Confidence            999999999974221   11111223444333322110     00000000000 0011234567899999999999999


Q ss_pred             CCCCCHHHHHcCCCCCCCC
Q 005958          386 SKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       386 ~kRpSa~elL~HPwf~~~~  404 (667)
                      ++|||+++++.||||....
T Consensus       277 ~~R~t~~ell~~~~~~~~~  295 (328)
T cd07856         277 QKRISAAEALAHPYLAPYH  295 (328)
T ss_pred             hhCCCHHHHhcCCcccccc
Confidence            9999999999999997655

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=100.00  E-value=1.4e-36  Score=310.64  Aligned_cols=240  Identities=21%  Similarity=0.319  Sum_probs=193.3

Q ss_pred             eccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEec
Q 005958           94 VSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSH  168 (667)
Q Consensus        94 LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~  168 (667)
                      ||.|+||    .||+|.+..     +++.||+|.+....     ..+.+.+|++++++++      ||||+++++.+.  
T Consensus         1 lg~g~~~----~vy~~~~~~-----~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~------h~~i~~~~~~~~--   63 (265)
T cd05579           1 ISKGAYG----RVFLAKKKS-----TGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQ------SPYVVKLYYSFQ--   63 (265)
T ss_pred             CCCCCce----EEEEEEECC-----CCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCC------CcchhHHHHhee--
Confidence            6899999    999999987     78999999987532     2345688999999994      999999999998  


Q ss_pred             ccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 005958          169 TTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLH  248 (667)
Q Consensus       169 ~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLH  248 (667)
                         .....|++|| |+.+++|.+++.+.+         .+++                    ..+..++.||+.||.|||
T Consensus        64 ---~~~~~~lv~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~~i~~qi~~~L~~lH  110 (265)
T cd05579          64 ---GKKNLYLVME-YLPGGDLASLLENVG---------SLDE--------------------DVARIYIAEIVLALEYLH  110 (265)
T ss_pred             ---cCcEEEEEEe-cCCCCcHHHHHHHcC---------CCCH--------------------HHHHHHHHHHHHHHHHHH
Confidence               7889999999 999999999998743         3443                    457789999999999999


Q ss_pred             HCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------------CCCCCCcccccCCCCCCchhhHHHHH
Q 005958          249 SHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------------GPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       249 s~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------------~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      ++||+|+||+|+||+++. ++.++|+|||++......                 ...|+|||.+.. ..++.++||||||
T Consensus       111 ~~~i~H~di~~~nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~-~~~~~~~Dv~slG  188 (265)
T cd05579         111 SNGIIHRDLKPDNILIDS-NGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILG-QGHSKTVDWWSLG  188 (265)
T ss_pred             HcCeecCCCCHHHeEEcC-CCCEEEEecccchhcccCcccccccccccccCcccCccccCHHHhcC-CCCCcchhhHHHH
Confidence            999999999999999998 899999999998754322                 256999996544 4488999999999


Q ss_pred             HHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH
Q 005958          312 FMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC  391 (667)
Q Consensus       312 viLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa  391 (667)
                      +++|+|++|..||...            ........   ......     ..+.....++++.+||.+||+.+|++|||+
T Consensus       189 ~~~~~l~~g~~p~~~~------------~~~~~~~~---~~~~~~-----~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~  248 (265)
T cd05579         189 CILYEFLVGIPPFHGE------------TPEEIFQN---ILNGKI-----EWPEDVEVSDEAIDLISKLLVPDPEKRLGA  248 (265)
T ss_pred             HHHHHHHhCCCCCCCC------------CHHHHHHH---HhcCCc-----CCCccccCCHHHHHHHHHHhcCCHhhcCCC
Confidence            9999999999998521            12221111   111111     111112247899999999999999999999


Q ss_pred             ---HHHHcCCCCCCCCC
Q 005958          392 ---LDALRHPFLCGPRW  405 (667)
Q Consensus       392 ---~elL~HPwf~~~~~  405 (667)
                         .++|+||||.++.|
T Consensus       249 ~~~~~~l~~~~~~~~~~  265 (265)
T cd05579         249 KSIEEIKNHPFFKGIDW  265 (265)
T ss_pred             ccHHHHhcCccccCCCC
Confidence               99999999998876

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=100.00  E-value=7.8e-37  Score=323.00  Aligned_cols=255  Identities=16%  Similarity=0.147  Sum_probs=185.7

Q ss_pred             eEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEecccCCCCeEEEEE
Q 005958          105 VVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVH  180 (667)
Q Consensus       105 ~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~~~~~~~~~lVm  180 (667)
                      .||.+++..     +++.||||++...    ...+.+.+|+++++.++      ||||+++++++.     ..+..+++|
T Consensus        15 ~v~~~~~~~-----~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~------h~~i~~~~~~~~-----~~~~~~~~~   78 (314)
T cd08216          15 IVHLAKHKP-----TNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQ------HPNILPYVTSFI-----VDSELYVVS   78 (314)
T ss_pred             eEEEEEecC-----CCCEEEEEEEeccccchhHHHHHHHHHHHHHhcC------Ccchhhhhheee-----cCCeEEEEE
Confidence            778888777     7899999998753    23356789999999995      999999999998     778899999


Q ss_pred             ccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCC
Q 005958          181 GQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLE  260 (667)
Q Consensus       181 E~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPe  260 (667)
                      | |+++|+|.+++.....       ..+++                    ..++.+++||+.||+|||++||+||||||+
T Consensus        79 e-~~~~~~l~~~l~~~~~-------~~~~~--------------------~~~~~~~~~l~~~L~~LH~~~ivH~dlk~~  130 (314)
T cd08216          79 P-LMAYGSCEDLLKTHFP-------EGLPE--------------------LAIAFILKDVLNALDYIHSKGFIHRSVKAS  130 (314)
T ss_pred             e-ccCCCCHHHHHHHhcc-------cCCCH--------------------HHHHHHHHHHHHHHHHHHHCCeecCCCCcc
Confidence            9 9999999999986420       12343                    457789999999999999999999999999


Q ss_pred             cEEEcCCCCeEEEeeecccccccCC----------------CCCCCCcccccCC-CCCCchhhHHHHHHHHHHHHhCCCC
Q 005958          261 NVHISPVDRHIKVGILGNAADFYED----------------GPNNSSPDSNMDR-RQMMIAFDMRCVGFMMAKMVLRELM  323 (667)
Q Consensus       261 NILl~~~~~~vKL~DFGlA~~~~~~----------------~~~Y~APE~l~~~-~~ys~ksDIWSLGviLyemltG~~P  323 (667)
                      ||+++. ++.+||+|||.+......                ...|+|||.+... ..|+.++||||+||++|||++|.+|
T Consensus       131 Nili~~-~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~p  209 (314)
T cd08216         131 HILLSG-DGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVP  209 (314)
T ss_pred             eEEEec-CCceEEecCccceeeccccccccccccccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCC
Confidence            999998 899999999988644221                1469999966543 4588999999999999999999999


Q ss_pred             Chhhhhhhhhh-hccCCChhHHHHHHHHHhcc-----------CCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH
Q 005958          324 DPLIFTKFKSF-LTKGIDPSCLREFLLQVLNR-----------NSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC  391 (667)
Q Consensus       324 F~~~~~~~~~~-~~~g~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa  391 (667)
                      |.......... ...+..+..+..........           ...............++++.+||.+||++||++|||+
T Consensus       210 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~  289 (314)
T cd08216         210 FKDMPATQMLLEKVRGTVPCLLDKSTYPLYEDSMSQSRSSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSA  289 (314)
T ss_pred             CCCCCHHHHHHHHHhccCccccccCchhhhcCCcCcccccccccchhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCcCH
Confidence            96322111000 00000000000000000000           0000000111222346789999999999999999999


Q ss_pred             HHHHcCCCCCCCC
Q 005958          392 LDALRHPFLCGPR  404 (667)
Q Consensus       392 ~elL~HPwf~~~~  404 (667)
                      +++|+||||+..+
T Consensus       290 ~~ll~~p~~~~~~  302 (314)
T cd08216         290 SQLLNHSFFKQCK  302 (314)
T ss_pred             HHHhcCchHhhhc
Confidence            9999999998776

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=100.00  E-value=3.6e-36  Score=309.70  Aligned_cols=247  Identities=17%  Similarity=0.166  Sum_probs=192.9

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcc-----hhhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS-----VQAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~-----~~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      .++|++.+.||+|+||    .||+|++..     +++.||||.+..     ......+.+|+++++.++      ||||+
T Consensus         1 ~~~~~i~~~l~~g~~~----~v~~~~~~~-----~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~------h~~i~   65 (267)
T cd08228           1 LANFQIEKKIGRGQFS----EVYRATCLL-----DRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLN------HPNVI   65 (267)
T ss_pred             CcceeeeeeeccCCCe----eEEEEEEeC-----CCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCC------Cccee
Confidence            3689999999999999    999999987     789999998754     122345688999999994      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++.     ..+..++||| |+++|+|.+++......     ...+++                    ..+..++.|
T Consensus        66 ~~~~~~~-----~~~~~~~v~e-~~~~~~L~~~~~~~~~~-----~~~~~~--------------------~~~~~~~~~  114 (267)
T cd08228          66 KYLDSFI-----EDNELNIVLE-LADAGDLSQMIKYFKKQ-----KRLIPE--------------------RTVWKYFVQ  114 (267)
T ss_pred             eeeeeEE-----ECCeEEEEEE-ecCCCcHHHHHHHhhhc-----cCCCCH--------------------HHHHHHHHH
Confidence            9999998     6789999999 99999999998643210     012343                    457889999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      |+.||.|||++||+|+||||+||+++. ++.++|+|||++.....         +.+.|+|||.+.+ ..++.++||||+
T Consensus       115 i~~~l~~LH~~~i~H~dl~~~nil~~~-~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~sl  192 (267)
T cd08228         115 LCSAVEHMHSRRVMHRDIKPANVFITA-TGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHE-NGYNFKSDIWSL  192 (267)
T ss_pred             HHHHHHHHhhCCeeCCCCCHHHEEEcC-CCCEEECccccceeccchhHHHhcCCCCccccChhhhcc-CCCCchhhHHHH
Confidence            999999999999999999999999998 88999999999876543         2357999996544 458899999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      ||++|||++|+.||...          ......+...+.   ....+     .......+.++.+||.+||..||++||+
T Consensus       193 G~~l~el~~g~~p~~~~----------~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~li~~cl~~~p~~Rp~  254 (267)
T cd08228         193 GCLLYEMAALQSPFYGD----------KMNLFSLCQKIE---QCDYP-----PLPTEHYSEKLRELVSMCIYPDPDQRPD  254 (267)
T ss_pred             HHHHHHHhcCCCCCccc----------cccHHHHHHHHh---cCCCC-----CCChhhcCHHHHHHHHHHCCCCcccCcC
Confidence            99999999999997421          111111112111   11100     0012245678999999999999999999


Q ss_pred             HHHHHcC
Q 005958          391 CLDALRH  397 (667)
Q Consensus       391 a~elL~H  397 (667)
                      +.++++.
T Consensus       255 ~~~vl~~  261 (267)
T cd08228         255 IGYVHQI  261 (267)
T ss_pred             HHHHHHH
Confidence            9999873

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4e-36  Score=309.75  Aligned_cols=244  Identities=19%  Similarity=0.244  Sum_probs=195.1

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-------hhHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-------QAQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-------~~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      .+|++.+.||+|+||    .||+|++..     +++.||+|.+...       .....+.+|++++++++      ||||
T Consensus         2 ~~~~~~~~lg~g~~g----~v~~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~------h~~i   66 (264)
T cd06653           2 VNWRLGKLLGRGAFG----EVYLCYDAD-----TGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLR------HDRI   66 (264)
T ss_pred             CceeeeeeEccCCCe----EEEEEEEcC-----CCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcC------CCCc
Confidence            579999999999999    999999987     7999999987531       12245688999999995      9999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      +++++++.+.   ..+.++++|| |+++++|.+++...+         .+++                    ..++.++.
T Consensus        67 ~~~~~~~~~~---~~~~~~~v~e-~~~~~~L~~~~~~~~---------~l~~--------------------~~~~~~~~  113 (264)
T cd06653          67 VQYYGCLRDP---EEKKLSIFVE-YMPGGSIKDQLKAYG---------ALTE--------------------NVTRRYTR  113 (264)
T ss_pred             ceEEEEEEcC---CCCEEEEEEE-eCCCCcHHHHHHHcC---------CCCH--------------------HHHHHHHH
Confidence            9999998733   4567899999 999999999997643         3443                    45677999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC------------CCCCCCCcccccCCCCCCchhh
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE------------DGPNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~------------~~~~Y~APE~l~~~~~ys~ksD  306 (667)
                      ||+.||.|||++||+|+||||+||+++. ++.++|+|||++.....            +...|+|||.+.+ ..++.++|
T Consensus       114 ~i~~al~~LH~~~i~H~dl~p~ni~i~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~D  191 (264)
T cd06653         114 QILQGVSYLHSNMIVHRDIKGANILRDS-AGNVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMSPEVISG-EGYGRKAD  191 (264)
T ss_pred             HHHHHHHHHHhCCEecCCCCHHHEEEcC-CCCEEECccccccccccccccCccccccCCcccccCHhhhcC-CCCCcccc
Confidence            9999999999999999999999999998 88999999999975432            2257999996554 45889999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          307 MRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       307 IWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      +|||||++|+|++|++||.+....              ... ........     ....+...++++.++|.+||. +|.
T Consensus       192 i~slG~il~~l~~g~~p~~~~~~~--------------~~~-~~~~~~~~-----~~~~p~~~~~~~~~~i~~~l~-~~~  250 (264)
T cd06653         192 VWSVACTVVEMLTEKPPWAEYEAM--------------AAI-FKIATQPT-----KPMLPDGVSDACRDFLKQIFV-EEK  250 (264)
T ss_pred             HHHHHHHHHHHHhCCCCCCccCHH--------------HHH-HHHHcCCC-----CCCCCcccCHHHHHHHHHHhc-Ccc
Confidence            999999999999999998532111              111 11111111     112345678899999999999 579


Q ss_pred             CCCCHHHHHcCCCC
Q 005958          387 KRISCLDALRHPFL  400 (667)
Q Consensus       387 kRpSa~elL~HPwf  400 (667)
                      +||++.+++.|||.
T Consensus       251 ~r~~~~~~~~~~~~  264 (264)
T cd06653         251 RRPTAEFLLRHPFV  264 (264)
T ss_pred             cCccHHHHhcCCCC
Confidence            99999999999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.3e-36  Score=316.82  Aligned_cols=284  Identities=19%  Similarity=0.219  Sum_probs=219.1

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-HHHHHHHHHHHHHHhhcc--CCCCCcce
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-QRRGRRAIEVLKKLVRRR--LMYHSYSM  159 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-~~~~~rEi~iL~~L~~~~--~~~HpnIv  159 (667)
                      |.-.+|.+.++||-|.|+    +||+|.+..     ..+.||+|+.+..+. .+....||.+|++++...  ..+-.+||
T Consensus        75 F~~gRY~v~rKLGWGHFS----TVWLawDtq-----~~r~VAlKVvKSAqhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV  145 (590)
T KOG1290|consen   75 FNGGRYHVQRKLGWGHFS----TVWLAWDTQ-----NKRYVALKVVKSAQHYTEAALDEIKLLQQVREGDPNDPGKKCVV  145 (590)
T ss_pred             ccCceEEEEEeccccccc----eeEEEeecc-----CCeEEEEEEEehhhHHHHHHHHHHHHHHHHHhcCCCCCCCceee
Confidence            455899999999999999    999999998     789999999987543 345689999999998654  56667899


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      +|++.|...+. ++.++|||+| +++. +|..+|+...+                           ..+++..|+.|++|
T Consensus       146 ~LlD~FkhsGp-NG~HVCMVfE-vLGd-nLLklI~~s~Y---------------------------rGlpl~~VK~I~~q  195 (590)
T KOG1290|consen  146 QLLDHFKHSGP-NGQHVCMVFE-VLGD-NLLKLIKYSNY---------------------------RGLPLSCVKEICRQ  195 (590)
T ss_pred             eeeccceecCC-CCcEEEEEeh-hhhh-HHHHHHHHhCC---------------------------CCCcHHHHHHHHHH
Confidence            99999985543 7789999999 9999 99999998652                           13456789999999


Q ss_pred             HHHHHHHHHHC-CCcccCCCCCcEEEc-----------------------------------------------------
Q 005958          240 LLIGVNYLHSH-GLAHTELRLENVHIS-----------------------------------------------------  265 (667)
Q Consensus       240 Il~aL~yLHs~-gIvHrDLKPeNILl~-----------------------------------------------------  265 (667)
                      ||.||.|||.. ||||.||||+|||+.                                                     
T Consensus       196 vL~GLdYLH~ecgIIHTDlKPENvLl~~~e~~~~~~~~~a~e~~~~~p~~s~s~~~t~~d~~~~~~~~~~s~~~~k~~~k  275 (590)
T KOG1290|consen  196 VLTGLDYLHRECGIIHTDLKPENVLLCSTEIDPAKDAREAGEATTSLPKMSPSAVSTRPDALQRMAAEPMSKSKFKKMKK  275 (590)
T ss_pred             HHHHHHHHHHhcCccccCCCcceeeeeccccchhhhhhhhccccccCCCCCcccccccccccchhhccccchhhHHHHHH
Confidence            99999999986 999999999999985                                                     


Q ss_pred             -------------------------------------------------------------CC-----------------
Q 005958          266 -------------------------------------------------------------PV-----------------  267 (667)
Q Consensus       266 -------------------------------------------------------------~~-----------------  267 (667)
                                                                                   ..                 
T Consensus       276 k~~r~~~~~~~~l~~~~~~~~~~~~~s~n~~~~~n~~~~~v~~~~~~~~~~~~~~~~n~~~k~~e~~~~~~~sl~~~~~~  355 (590)
T KOG1290|consen  276 KLKRQAKKLEASLAGLEGIEEEPNQESYNNEPRINGNESTVERSTLEEDSNENGNRENLPIKSPENFRGNNTSLPESQLR  355 (590)
T ss_pred             HHhhhhhhhhhhhcccccccccccccccccccCCCccccchhhcccccccccccCCccccccCccccccccccccchhcc
Confidence                                                                         00                 


Q ss_pred             ----------------------------------CCeEEEeeecccccccCC------CCCCCCcccccCCCCCCchhhH
Q 005958          268 ----------------------------------DRHIKVGILGNAADFYED------GPNNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       268 ----------------------------------~~~vKL~DFGlA~~~~~~------~~~Y~APE~l~~~~~ys~ksDI  307 (667)
                                                        +-.+||+|||.|+.....      +..|+|||++++.+ |++.+||
T Consensus       356 ~~~t~~~~~~~s~~s~~~~~~n~~v~p~~~~~~~di~vKIaDlGNACW~~khFT~DIQTRQYRapEVllGsg-Y~~~ADi  434 (590)
T KOG1290|consen  356 DSATPSDGSLSSPSSPGTIASNPLVNPDIPLPECDIRVKIADLGNACWVHKHFTEDIQTRQYRAPEVLLGSG-YSTSADI  434 (590)
T ss_pred             cccccccccccCcCCccccccccccCCCCCCCccceeEEEeeccchhhhhhhhchhhhhhhccCcceeecCC-CCCchhH
Confidence                                              014799999999875443      37899999888765 9999999


Q ss_pred             HHHHHHHHHHHhCCCCCh---------hhhhhhhhhhccCCChhHHHHH---HHHHhccCCCCC-CCCc-----------
Q 005958          308 RCVGFMMAKMVLRELMDP---------LIFTKFKSFLTKGIDPSCLREF---LLQVLNRNSSSG-NTGF-----------  363 (667)
Q Consensus       308 WSLGviLyemltG~~PF~---------~~~~~~~~~~~~g~~~~~l~~~---~~~~~~~~~~~~-~~~~-----------  363 (667)
                      ||++|++|||+||..+|.         +.+++..++...|.-|..+.--   -+..+...-... ...+           
T Consensus       435 WS~AC~~FELaTGDyLFePhsG~~Y~rDEDHiA~i~ELLG~iPr~ia~~Gk~SRdFFnr~G~LrhI~~LK~WpL~~VL~e  514 (590)
T KOG1290|consen  435 WSTACMAFELATGDYLFEPHSGENYSRDEDHIALIMELLGKIPRKIALGGKYSRDFFNRRGELRHIRRLKPWPLYEVLIE  514 (590)
T ss_pred             HHHHHHHHHhhcCceeecCCCCCCCCccHHHHHHHHHHHhhccHHHHhcCcchHhhhccccceecccccCCCcHHHHHHH
Confidence            999999999999999986         3456666766667655433210   011111100000 0001           


Q ss_pred             --ccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCCCC
Q 005958          364 --QILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPRWR  406 (667)
Q Consensus       364 --~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~~~  406 (667)
                        ........++.|||.-||+++|++||||.++|+|||++....+
T Consensus       515 KY~~s~e~A~~fsdFL~PmLef~PeKR~tA~~cl~hPwLn~~~~~  559 (590)
T KOG1290|consen  515 KYEWSEEDAQQFSDFLSPMLEFDPEKRPTAAQCLKHPWLNPVAGP  559 (590)
T ss_pred             HhCCCHHHHHHHHHHHHHHHhcCccccccHHHHhcCccccCCCCC
Confidence              1111223478899999999999999999999999999987643

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=100.00  E-value=3.5e-36  Score=314.67  Aligned_cols=258  Identities=17%  Similarity=0.200  Sum_probs=196.9

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ..++|.+.+.||+|+||    .||++.+.......++..+|+|.+...  .....+.+|+++++++.      ||||+++
T Consensus         3 ~~~~~~~~~~lg~G~~~----~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~~   72 (288)
T cd05093           3 KRHNIVLKRELGEGAFG----KVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQ------HEHIVKF   72 (288)
T ss_pred             chHHeeeccccCCcCCe----eEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCC------CCCcceE
Confidence            45789999999999999    999998754322235678999998753  23456789999999995      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     ..+..++||| |+++|+|.+++...+.....     +.+           ......+++..+..++.||+
T Consensus        73 ~~~~~-----~~~~~~lv~e-~~~~~~L~~~i~~~~~~~~~-----~~~-----------~~~~~~l~~~~~~~~~~ql~  130 (288)
T cd05093          73 YGVCV-----EGDPLIMVFE-YMKHGDLNKFLRAHGPDAVL-----MAE-----------GNRPAELTQSQMLHIAQQIA  130 (288)
T ss_pred             EEEEe-----cCCccEEEEE-cCCCCCHHHHHHHcCCcccc-----ccc-----------cCCCCCCCHHHHHHHHHHHH
Confidence            99998     7789999999 99999999999865421110     000           01112344567888999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhhHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      .||+|||++||+||||||+|||++. ++.+||+|||++......           ...|+|||.+. ...++.++|||||
T Consensus       131 ~aL~~lH~~~i~H~dlkp~Nili~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~sDiwsl  208 (288)
T cd05093         131 AGMVYLASQHFVHRDLATRNCLVGE-NLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIM-YRKFTTESDVWSL  208 (288)
T ss_pred             HHHHHHHhCCeeecccCcceEEEcc-CCcEEeccCCccccccCCceeecCCCCCccccccCHHHhc-cCCCCchhhHHHH
Confidence            9999999999999999999999998 899999999999754321           24699999554 4568999999999


Q ss_pred             HHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          311 GFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       311 GviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      ||++|+|++ |.+||...            ......+   .+.....      .......+.++.+|+.+||+.||.+||
T Consensus       209 G~il~~l~t~g~~p~~~~------------~~~~~~~---~i~~~~~------~~~~~~~~~~l~~li~~~l~~~p~~Rp  267 (288)
T cd05093         209 GVVLWEIFTYGKQPWYQL------------SNNEVIE---CITQGRV------LQRPRTCPKEVYDLMLGCWQREPHMRL  267 (288)
T ss_pred             HHHHHHHHhCCCCCCCCC------------CHHHHHH---HHHcCCc------CCCCCCCCHHHHHHHHHHccCChhhCC
Confidence            999999998 89998522            1111111   1111111      112235678999999999999999999


Q ss_pred             CHHHHHc
Q 005958          390 SCLDALR  396 (667)
Q Consensus       390 Sa~elL~  396 (667)
                      |+.++++
T Consensus       268 t~~~v~~  274 (288)
T cd05093         268 NIKEIHS  274 (288)
T ss_pred             CHHHHHH
Confidence            9999864

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=100.00  E-value=1.5e-36  Score=320.47  Aligned_cols=248  Identities=20%  Similarity=0.208  Sum_probs=197.0

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-----hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ..|++.+.||+|+||    .||+|.+..     +++.||+|++...     .....+.+|+++++.++      ||||++
T Consensus        15 ~~y~~~~~lg~g~~g----~vy~~~~~~-----~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~------h~niv~   79 (307)
T cd06607          15 KLFTDLREIGHGSFG----AVYFARDVR-----TNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLR------HPNTIE   79 (307)
T ss_pred             hhhhhheeecCCCCe----EEEEEEEcC-----CCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCC------CCCEEE
Confidence            569999999999999    999999987     7899999998632     22245788999999994      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     +.+..|+||| |+.+ +|.+++....        ..+++                    ..+..++.||
T Consensus        80 ~~~~~~-----~~~~~~lv~e-~~~g-~l~~~~~~~~--------~~l~~--------------------~~~~~~~~ql  124 (307)
T cd06607          80 YKGCYL-----REHTAWLVME-YCLG-SASDILEVHK--------KPLQE--------------------VEIAAICHGA  124 (307)
T ss_pred             EEEEEE-----eCCeEEEEHH-hhCC-CHHHHHHHcc--------cCCCH--------------------HHHHHHHHHH
Confidence            999998     7788999999 9986 8888876532        13443                    4577899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----CCCCCCccccc--CCCCCCchhhHHHHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----GPNNSSPDSNM--DRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----~~~Y~APE~l~--~~~~ys~ksDIWSLGvi  313 (667)
                      +.||.|||++||+||||+|+||+++. ++.+||+|||++......     .+.|+|||++.  ....++.++|||||||+
T Consensus       125 ~~~L~~LH~~~i~H~dl~p~nIl~~~-~~~~kL~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~i  203 (307)
T cd06607         125 LQGLAYLHSHERIHRDIKAGNILLTE-PGTVKLADFGSASLVSPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGIT  203 (307)
T ss_pred             HHHHHHHHHCCceecCCCcccEEECC-CCCEEEeecCcceecCCCCCccCCccccCceeeeccCCCCCCcccchHHHHHH
Confidence            99999999999999999999999998 899999999998765432     36799999764  34568899999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      +|||++|.+||....            .....   ........+.     .....++.++++||.+||..||++||++.+
T Consensus       204 l~el~tg~~p~~~~~------------~~~~~---~~~~~~~~~~-----~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~  263 (307)
T cd06607         204 CIELAERKPPLFNMN------------AMSAL---YHIAQNDSPT-----LSSNDWSDYFRNFVDSCLQKIPQDRPSSEE  263 (307)
T ss_pred             HHHHHcCCCCCCCcc------------HHHHH---HHHhcCCCCC-----CCchhhCHHHHHHHHHHhcCChhhCcCHHH
Confidence            999999999985221            11100   0011110000     011235678999999999999999999999


Q ss_pred             HHcCCCCCCCC
Q 005958          394 ALRHPFLCGPR  404 (667)
Q Consensus       394 lL~HPwf~~~~  404 (667)
                      ++.||||....
T Consensus       264 il~~~~~~~~~  274 (307)
T cd06607         264 LLKHRFVLRER  274 (307)
T ss_pred             HhcChhhcccC
Confidence            99999998754

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=100.00  E-value=1e-36  Score=317.03  Aligned_cols=263  Identities=16%  Similarity=0.184  Sum_probs=198.5

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      +.+.+|++.+.||.|+||    .||+|.+........++.||+|+++...   ..+.+.+|+.++..++      ||||+
T Consensus         2 i~~~~~~~~~~lg~G~~g----~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~------h~~iv   71 (283)
T cd05091           2 INLSTVRFMEELGEDRFG----KVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQ------HPNIV   71 (283)
T ss_pred             CCHHHHHHHHHhCCCCCC----eEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCC------CCCcC
Confidence            345678999999999999    9999998764333357889999997532   2345678999999884      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++.     ..+..++++| |+.+++|.+++........+..   ..          ........+++..+..++.|
T Consensus        72 ~~~~~~~-----~~~~~~~~~e-~~~~~~l~~~l~~~~~~~~~~~---~~----------~~~~~~~~~~~~~~~~~~~q  132 (283)
T cd05091          72 CLLGVVT-----KEQPLSMIFS-YCSHSDLHEFLVMRSPHSDVGS---TD----------DDKTVKSTLEPADFVHIVTQ  132 (283)
T ss_pred             eEEEEEc-----CCCceEEEEE-cCCCCcHHHHHHhcCCCccccc---cc----------cccccccccCHHHHHHHHHH
Confidence            9999998     6778999999 9999999999975431111100   00          00011123455678899999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhhHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      ++.||.|||++||+||||||+|||++. ++.+||+|||+++.....           .+.|+|||.+.. ..++.++|||
T Consensus       133 l~~aL~~lH~~gi~H~dlkp~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Dv~  210 (283)
T cd05091         133 IAAGMEFLSSHHVVHKDLATRNVLVFD-KLNVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMY-GKFSIDSDIW  210 (283)
T ss_pred             HHHHHHHHHHcCccccccchhheEecC-CCceEecccccccccccchheeeccCccCCccccCHHHHhc-CCCCcchhHH
Confidence            999999999999999999999999998 889999999998754321           147999996544 4589999999


Q ss_pred             HHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          309 CVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       309 SLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      ||||++|||++ |.+||.            +.......+.+.   ....      .+....++.++.+|+.+||+.||++
T Consensus       211 slG~~l~el~~~g~~p~~------------~~~~~~~~~~i~---~~~~------~~~~~~~~~~~~~li~~cl~~~p~~  269 (283)
T cd05091         211 SYGVVLWEVFSYGLQPYC------------GYSNQDVIEMIR---NRQV------LPCPDDCPAWVYTLMLECWNEFPSR  269 (283)
T ss_pred             HHHHHHHHHHcCCCCCCC------------CCCHHHHHHHHH---cCCc------CCCCCCCCHHHHHHHHHHhCCCccc
Confidence            99999999998 888874            222222222221   1111      1223467889999999999999999


Q ss_pred             CCCHHHHHcC
Q 005958          388 RISCLDALRH  397 (667)
Q Consensus       388 RpSa~elL~H  397 (667)
                      ||+++++++.
T Consensus       270 RP~~~~i~~~  279 (283)
T cd05091         270 RPRFKDIHSR  279 (283)
T ss_pred             CCCHHHHHHH
Confidence            9999999864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=100.00  E-value=5.7e-38  Score=333.32  Aligned_cols=275  Identities=18%  Similarity=0.235  Sum_probs=214.7

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-hhHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      -++|.+....|+|-|+    +|..|.+..     .|..||||+|... -..+..++|++||++|.....-+--|+++++.
T Consensus       431 D~RY~V~~~~GkGvFs----~Vvra~D~~-----r~~~vAiKIIRnNE~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r  501 (752)
T KOG0670|consen  431 DSRYEVQGYTGKGVFS----TVVRARDQA-----RGQEVAIKIIRNNEVMHKTGLKELEILKKLNDADPEDKFHCLRLFR  501 (752)
T ss_pred             cceeEEEeccccceee----eeeeccccC-----CCCeeEEEEeecchHHhhhhhHHHHHHHHhhccCchhhhHHHHHHH
Confidence            3689999999999999    999999998     6889999999864 34566799999999997554445568999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      .|.     ..+++|||+| -+.- +|.+++++.+                          .-+.+.+..|+.|+.||..|
T Consensus       502 ~F~-----hknHLClVFE-~Lsl-NLRevLKKyG--------------------------~nvGL~ikaVRsYaqQLflA  548 (752)
T KOG0670|consen  502 HFK-----HKNHLCLVFE-PLSL-NLREVLKKYG--------------------------RNVGLHIKAVRSYAQQLFLA  548 (752)
T ss_pred             Hhh-----hcceeEEEeh-hhhc-hHHHHHHHhC--------------------------cccceeehHHHHHHHHHHHH
Confidence            998     8899999999 8888 9999999865                          22345567899999999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-------CCCCCcccccCCCCCCchhhHHHHHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-------PNNSSPDSNMDRRQMMIAFDMRCVGFMMAK  316 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-------~~Y~APE~l~~~~~ys~ksDIWSLGviLye  316 (667)
                      |..|-..||+|.||||+|||+++....+||||||.|.....+.       ..|.|||++++- +|+...|+||+||+|||
T Consensus       549 LklLK~c~vlHaDIKPDNiLVNE~k~iLKLCDfGSA~~~~eneitPYLVSRFYRaPEIiLG~-~yd~~iD~WSvgctLYE  627 (752)
T KOG0670|consen  549 LKLLKKCGVLHADIKPDNILVNESKNILKLCDFGSASFASENEITPYLVSRFYRAPEIILGL-PYDYPIDTWSVGCTLYE  627 (752)
T ss_pred             HHHHHhcCeeecccCccceEeccCcceeeeccCccccccccccccHHHHHHhccCcceeecC-cccCCccceeeceeeEE
Confidence            9999999999999999999999977899999999999887765       569999976655 59999999999999999


Q ss_pred             HHhCCCCChh--hhhhhhhh-hccCCChhHHHHH---HHHHhccCCCCC---------CC-------------------C
Q 005958          317 MVLRELMDPL--IFTKFKSF-LTKGIDPSCLREF---LLQVLNRNSSSG---------NT-------------------G  362 (667)
Q Consensus       317 mltG~~PF~~--~~~~~~~~-~~~g~~~~~l~~~---~~~~~~~~~~~~---------~~-------------------~  362 (667)
                      |.||+.+||+  ..++.+.+ ...|.-|..+...   +...+.....+.         ..                   .
T Consensus       628 lYtGkIlFpG~TNN~MLrl~me~KGk~p~KmlRKgqF~dqHFD~d~nf~~~e~D~vT~r~~~~vm~~vkPtkdl~s~l~~  707 (752)
T KOG0670|consen  628 LYTGKILFPGRTNNQMLRLFMELKGKFPNKMLRKGQFKDQHFDQDLNFLYIEVDKVTEREKRTVMVNVKPTKDLGSELIA  707 (752)
T ss_pred             eeccceecCCCCcHHHHHHHHHhcCCCcHHHhhhcchhhhhcccccceEEEeccccccceeEEEecccCcchhHHHHHhc
Confidence            9999999995  33444433 3455544432211   111111100000         00                   0


Q ss_pred             ccccc----CCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCC
Q 005958          363 FQILD----RNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCG  402 (667)
Q Consensus       363 ~~~~~----~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~  402 (667)
                      .+.++    ..-.++++||.+||..||++|+|+.|+|+||||++
T Consensus       708 ~q~~~deq~~~~~~~rdLLdkml~LdP~KRit~nqAL~HpFi~~  751 (752)
T KOG0670|consen  708 VQRLPDEQPKIVQQLRDLLDKMLILDPEKRITVNQALKHPFITE  751 (752)
T ss_pred             cCCCCchhHHHHHHHHHHHHHHhccChhhcCCHHHHhcCCcccC
Confidence            00000    11137899999999999999999999999999975

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-37  Score=322.66  Aligned_cols=255  Identities=21%  Similarity=0.261  Sum_probs=214.2

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCC
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      ..+...+|..+.+||+|+||    .|.+|..+.     +.+.||||+++++-     +.+-.+.|-++|....     .-
T Consensus       344 d~i~~tDFnFl~VlGKGSFG----KVlLaerkg-----tdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~-----kp  409 (683)
T KOG0696|consen  344 DRIKATDFNFLMVLGKGSFG----KVLLAERKG-----TDELYAIKILKKDVIIQDDDVECTMVEKRVLALPG-----KP  409 (683)
T ss_pred             cceeecccceEEEeccCccc----eeeeecccC-----cchhhhhhhhccceeeecCcccceehhhhheecCC-----CC
Confidence            36778999999999999999    999999998     88999999998732     1122367888888775     57


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      |.+++++.+|+     .-+.+|+||| |+.||+|.-.|++-+         +|.|                    .++..
T Consensus       410 pFL~qlHScFQ-----TmDRLyFVME-yvnGGDLMyhiQQ~G---------kFKE--------------------p~AvF  454 (683)
T KOG0696|consen  410 PFLVQLHSCFQ-----TMDRLYFVME-YVNGGDLMYHIQQVG---------KFKE--------------------PVAVF  454 (683)
T ss_pred             chHHHHHHHhh-----hhhheeeEEE-EecCchhhhHHHHhc---------ccCC--------------------chhhh
Confidence            89999999999     7889999999 999999999999876         5665                    35678


Q ss_pred             HHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhh
Q 005958          236 LMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       236 i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksD  306 (667)
                      |+.+|+.||-+||++|||.||||.+|||++. +|++||+|||+++.---         +.|.|+|||++ ...+|+..+|
T Consensus       455 YAaEiaigLFFLh~kgIiYRDLKLDNvmLd~-eGHiKi~DFGmcKEni~~~~TTkTFCGTPdYiAPEIi-~YqPYgksvD  532 (683)
T KOG0696|consen  455 YAAEIAIGLFFLHSKGIIYRDLKLDNVMLDS-EGHIKIADFGMCKENIFDGVTTKTFCGTPDYIAPEII-AYQPYGKSVD  532 (683)
T ss_pred             hhHHHHHHhhhhhcCCeeeeeccccceEecc-CCceEeeecccccccccCCcceeeecCCCcccccceE-Eecccccchh
Confidence            9999999999999999999999999999999 99999999999985332         23899999954 5567999999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          307 MRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       307 IWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      +||+||+||||+.|++||.            |.+.+++...+..   .       ....+..+|.++.++++.+|.+.|.
T Consensus       533 WWa~GVLLyEmlaGQpPFd------------GeDE~elF~aI~e---h-------nvsyPKslSkEAv~ickg~ltK~P~  590 (683)
T KOG0696|consen  533 WWAFGVLLYEMLAGQPPFD------------GEDEDELFQAIME---H-------NVSYPKSLSKEAVAICKGLLTKHPG  590 (683)
T ss_pred             HHHHHHHHHHHHcCCCCCC------------CCCHHHHHHHHHH---c-------cCcCcccccHHHHHHHHHHhhcCCc
Confidence            9999999999999999994            5555554444322   1       2234567899999999999999999


Q ss_pred             CCCCH-----HHHHcCCCCCCCCCCCC
Q 005958          387 KRISC-----LDALRHPFLCGPRWRVD  408 (667)
Q Consensus       387 kRpSa-----~elL~HPwf~~~~~~~~  408 (667)
                      +|..+     .++-.||||+.++|...
T Consensus       591 kRLGcg~~ge~di~~H~FFR~iDWek~  617 (683)
T KOG0696|consen  591 KRLGCGPEGERDIREHPFFRRIDWEKL  617 (683)
T ss_pred             cccCCCCccccchhhCcchhhccHHHH
Confidence            99865     68999999999998544

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=5e-36  Score=308.21  Aligned_cols=242  Identities=18%  Similarity=0.189  Sum_probs=193.5

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      +..++|++.+.||+|+||    .||+|.+..      ++.||+|.++... ..+.+.+|+.++++++      ||||+++
T Consensus         3 ~~~~~~~~~~~lg~g~~~----~v~~~~~~~------~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~~   66 (261)
T cd05068           3 IDRTSIQLLRKLGAGQFG----EVWEGLWNN------TTPVAVKTLKPGTMDPKDFLAEAQIMKKLR------HPKLIQL   66 (261)
T ss_pred             cchhheeeEEEecccCCc----cEEEEEecC------CeEEEEEeeCCCcccHHHHHHHHHHHHHCC------CCCccce
Confidence            455789999999999999    999999764      5789999987532 3456789999999995      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     ..+..++||| |+.+++|.+++....       ...++                    ...+..++.|++
T Consensus        67 ~~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~~-------~~~~~--------------------~~~~~~~~~~i~  113 (261)
T cd05068          67 YAVCT-----LEEPIYIVTE-LMKYGSLLEYLQGGA-------GRALK--------------------LPQLIDMAAQVA  113 (261)
T ss_pred             eEEEe-----cCCCeeeeee-cccCCcHHHHHhccC-------CCCCC--------------------HHHHHHHHHHHH
Confidence            99998     7788999999 998889999997632       01233                    356788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC----------CCCCCcccccCCCCCCchhhHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG----------PNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~----------~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      .||.|||++||+||||||+||+++. ++.+||+|||++.......          ..|+|||.+ ....++.++||||||
T Consensus       114 ~~l~~lH~~~i~H~dl~p~Nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG  191 (261)
T cd05068         114 SGMAYLEAQNYIHRDLAARNVLVGE-NNICKVADFGLARVIKEDIYEAREGAKFPIKWTAPEAA-LYNRFSIKSDVWSFG  191 (261)
T ss_pred             HHHHHHHhCCeeeccCCcceEEEcC-CCCEEECCcceEEEccCCcccccCCCcCceeccCcccc-ccCCCCchhhHHHHH
Confidence            9999999999999999999999998 8999999999997654321          259999954 445689999999999


Q ss_pred             HHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          312 FMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       312 viLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      |++|||++ |++||.+            .........+..   ..      ..+.....+.++.+++.+||+.||++||+
T Consensus       192 ~~l~el~t~g~~p~~~------------~~~~~~~~~~~~---~~------~~~~~~~~~~~~~~li~~~l~~~P~~Rp~  250 (261)
T cd05068         192 ILLTEIVTYGRMPYPG------------MTNAEVLQQVDQ---GY------RMPCPPGCPKELYDIMLDCWKEDPDDRPT  250 (261)
T ss_pred             HHHHHHHhcCCCCCCC------------CCHHHHHHHHHc---CC------CCCCCCcCCHHHHHHHHHHhhcCcccCCC
Confidence            99999999 9999852            222222222211   10      11223456789999999999999999999


Q ss_pred             HHHHHc
Q 005958          391 CLDALR  396 (667)
Q Consensus       391 a~elL~  396 (667)
                      +.++++
T Consensus       251 ~~~l~~  256 (261)
T cd05068         251 FETLQW  256 (261)
T ss_pred             HHHHHH
Confidence            999874

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=100.00  E-value=4.6e-36  Score=315.37  Aligned_cols=258  Identities=18%  Similarity=0.156  Sum_probs=194.5

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ++|++.+.||+|+||    .||+|.....+   ....+|+|.++..   ...+.+.+|++++.++.     +||||++++
T Consensus         2 ~~~~~~~~lg~g~~g----~v~~~~~~~~~---~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~-----~hp~iv~~~   69 (297)
T cd05089           2 EDIKFEDVIGEGNFG----QVIRAMIKKDG---LKMNAAIKMLKEFASENDHRDFAGELEVLCKLG-----HHPNIINLL   69 (297)
T ss_pred             ccceeeeeecCCCcc----eEEEEEecCCC---CcceeEEEEccccCCHHHHHHHHHHHHHHHhhc-----CCCchhheE
Confidence            689999999999999    99999987621   1235788887642   23345788999999995     599999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     ..+..|+||| |+++|+|.+++........-.   .+.          ...+....++...++.++.||+.
T Consensus        70 ~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~~~~~~~---~~~----------~~~~~~~~l~~~~~~~i~~qi~~  130 (297)
T cd05089          70 GACE-----NRGYLYIAIE-YAPYGNLLDFLRKSRVLETDP---AFA----------KEHGTASTLTSQQLLQFASDVAT  130 (297)
T ss_pred             EEEc-----cCCcceEEEE-ecCCCcHHHHHHhcccccccc---ccc----------cccCccCCCCHHHHHHHHHHHHH
Confidence            9998     7778999999 999999999997643111000   000          00111224556788999999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      ||+|||++||+||||||+|||++. ++.+||+|||++......        ...|+|||.+ ....++.++|||||||++
T Consensus       131 al~~lH~~~ivH~dlkp~Nill~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~DvwSlG~il  208 (297)
T cd05089         131 GMQYLSEKQFIHRDLAARNVLVGE-NLASKIADFGLSRGEEVYVKKTMGRLPVRWMAIESL-NYSVYTTKSDVWSFGVLL  208 (297)
T ss_pred             HHHHHHHCCcccCcCCcceEEECC-CCeEEECCcCCCccccceeccCCCCcCccccCchhh-ccCCCCchhhHHHHHHHH
Confidence            999999999999999999999998 889999999998643211        1359999955 455689999999999999


Q ss_pred             HHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          315 AKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       315 yemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      |||++ |.+||..            .....+.+.+   ....      .......+++++++||.+||+.||.+|||+++
T Consensus       209 ~el~t~g~~pf~~------------~~~~~~~~~~---~~~~------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~  267 (297)
T cd05089         209 WEIVSLGGTPYCG------------MTCAELYEKL---PQGY------RMEKPRNCDDEVYELMRQCWRDRPYERPPFAQ  267 (297)
T ss_pred             HHHHcCCCCCCCC------------CCHHHHHHHH---hcCC------CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHH
Confidence            99997 9999842            2222222221   1111      11223457889999999999999999999999


Q ss_pred             HHcC
Q 005958          394 ALRH  397 (667)
Q Consensus       394 lL~H  397 (667)
                      +++.
T Consensus       268 i~~~  271 (297)
T cd05089         268 ISVQ  271 (297)
T ss_pred             HHHH
Confidence            9764

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=100.00  E-value=3.2e-36  Score=316.18  Aligned_cols=258  Identities=16%  Similarity=0.241  Sum_probs=201.7

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCC
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      ....+..++|++.+.||+|+||    .||+|.+..     +++.||||.++...   ......+|+.++.++.     +|
T Consensus         8 ~~~~~~~~~~~~~~~lg~g~~~----~v~~~~~~~-----~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~-----~~   73 (296)
T cd06618           8 QKYPADLNDLENLGEIGSGTCG----QVYKMRFKK-----TGHVMAVKQMRRTGNKEENKRILMDLDVVLKSH-----DC   73 (296)
T ss_pred             eeccCCcchheeeeEeeccCCe----EEEEEEECC-----CCeEEEEEEEeccCChHHHHHHHHHHHHHHhcc-----CC
Confidence            3445678999999999999999    999999987     78999999997532   2334567887777775     69


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      |||+++++++.     .....|+||| |+++ +|.+++....        ..+++                    ..+..
T Consensus        74 ~~i~~~~~~~~-----~~~~~~~v~e-~~~~-~l~~l~~~~~--------~~l~~--------------------~~~~~  118 (296)
T cd06618          74 PYIVKCYGYFI-----TDSDVFICME-LMST-CLDKLLKRIQ--------GPIPE--------------------DILGK  118 (296)
T ss_pred             CchHhhheeee-----cCCeEEEEee-ccCc-CHHHHHHHhc--------CCCCH--------------------HHHHH
Confidence            99999999998     7789999999 8876 8888876532        13443                    45678


Q ss_pred             HHHHHHHHHHHHHH-CCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCC---CCCCc
Q 005958          236 LMRDLLIGVNYLHS-HGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDR---RQMMI  303 (667)
Q Consensus       236 i~~QIl~aL~yLHs-~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~---~~ys~  303 (667)
                      ++.||+.||+|||+ +||+||||+|+||+++. ++.+||+|||++..+...        ...|+|||.+...   ..++.
T Consensus       119 i~~~i~~~l~~lH~~~~i~H~dl~p~nill~~-~~~~kL~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~  197 (296)
T cd06618         119 MTVAIVKALHYLKEKHGVIHRDVKPSNILLDA-SGNVKLCDFGISGRLVDSKAKTRSAGCAAYMAPERIDPPDPNPKYDI  197 (296)
T ss_pred             HHHHHHHHHHHHHhhCCEecCCCcHHHEEEcC-CCCEEECccccchhccCCCcccCCCCCccccCHhhcCCCCCcccccc
Confidence            99999999999997 59999999999999998 899999999998765432        2579999976533   34788


Q ss_pred             hhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhc
Q 005958          304 AFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLAT  383 (667)
Q Consensus       304 ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~  383 (667)
                      ++|||||||++|+|++|+.||......              .+.+........+    ..+....++.++.+||.+||..
T Consensus       198 ~~Di~slG~il~el~~g~~p~~~~~~~--------------~~~~~~~~~~~~~----~~~~~~~~~~~l~~li~~~l~~  259 (296)
T cd06618         198 RADVWSLGISLVELATGQFPYKNCKTE--------------FEVLTKILQEEPP----SLPPNEGFSPDFCSFVDLCLTK  259 (296)
T ss_pred             chhHHHHHHHHHHHHhCCCCCCcchhH--------------HHHHHHHhcCCCC----CCCCCCCCCHHHHHHHHHHccC
Confidence            999999999999999999998531110              1111122221111    1112224678999999999999


Q ss_pred             CcCCCCCHHHHHcCCCCCCCC
Q 005958          384 KPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       384 DP~kRpSa~elL~HPwf~~~~  404 (667)
                      ||++||+++++++||||....
T Consensus       260 ~p~~Rp~~~~il~~~~~~~~~  280 (296)
T cd06618         260 DHRKRPKYRELLQHPFIRRYE  280 (296)
T ss_pred             ChhhCCCHHHHhcChhhhccc
Confidence            999999999999999998754

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=100.00  E-value=3.1e-36  Score=331.16  Aligned_cols=280  Identities=15%  Similarity=0.122  Sum_probs=201.1

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      .+++..++|++++.||+|+||    .||+|.+.......++..||||++....   ..+.+.+|+++|+++.     .||
T Consensus        31 ~~~~~~~~~~~~~~LG~G~fG----~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~-----~Hp  101 (400)
T cd05105          31 RWEFPRDGLVLGRILGSGAFG----KVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLG-----PHL  101 (400)
T ss_pred             ceeccccceehhheecCCCCc----eEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcC-----CCC
Confidence            455667899999999999999    9999998654333356789999997532   2345789999999995     499


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcc----------ccc--ccCCCHH-------------
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPT----------LEA--TLALDEE-------------  211 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~----------l~~--~~~l~E~-------------  211 (667)
                      ||+++++++.     +.+.+||||| ||++|+|.++|........          +..  .....+.             
T Consensus       102 nIv~l~~~~~-----~~~~~~lv~E-y~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (400)
T cd05105         102 NIVNLLGACT-----KSGPIYIITE-YCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKG  175 (400)
T ss_pred             CeeeEEEEEc-----cCCceEEEEE-ecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccc
Confidence            9999999998     7788999999 9999999999976421000          000  0000000             


Q ss_pred             ----------------------------HHhhcCCC--------------CCCCCCccccHHHHHHHHHHHHHHHHHHHH
Q 005958          212 ----------------------------SVRKVGDD--------------SIGGPAASRQLRLIRLLMRDLLIGVNYLHS  249 (667)
Q Consensus       212 ----------------------------~a~~~~~~--------------~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs  249 (667)
                                                  ........              ........++...+..++.||+.||+|||+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~  255 (400)
T cd05105         176 DYMDMKQADTTQYVPMLEIKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLAS  255 (400)
T ss_pred             cccccccccccccchhhhhhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence                                        00000000              000011235667888999999999999999


Q ss_pred             CCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhhHHHHHHHHHHHH
Q 005958          250 HGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMV  318 (667)
Q Consensus       250 ~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksDIWSLGviLyeml  318 (667)
                      +||+||||||+|||++. ++.+||+|||+++.....           ...|+|||.+. ...++.++|||||||++|||+
T Consensus       256 ~~ivH~dikp~Nill~~-~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~DiwSlGvil~ell  333 (400)
T cd05105         256 KNCVHRDLAARNVLLAQ-GKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIF-DNLYTTLSDVWSYGILLWEIF  333 (400)
T ss_pred             CCeeCCCCChHhEEEeC-CCEEEEEeCCcceeccccccccccCCcCCCcceEChhhhc-CCCCCchhhHHHHHHHHHHHH
Confidence            99999999999999998 889999999999755322           14699999654 456899999999999999999


Q ss_pred             h-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHc
Q 005958          319 L-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALR  396 (667)
Q Consensus       319 t-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~  396 (667)
                      + |..||+...           ........+.   ...      ..+....++.++.++|.+||+.||++|||+.++.+
T Consensus       334 t~g~~P~~~~~-----------~~~~~~~~~~---~~~------~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~  392 (400)
T cd05105         334 SLGGTPYPGMI-----------VDSTFYNKIK---SGY------RMAKPDHATQEVYDIMVKCWNSEPEKRPSFLHLSD  392 (400)
T ss_pred             HCCCCCCcccc-----------hhHHHHHHHh---cCC------CCCCCccCCHHHHHHHHHHCccCHhHCcCHHHHHH
Confidence            7 888886321           0111111111   110      11223456789999999999999999999998865

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=100.00  E-value=6.3e-37  Score=326.84  Aligned_cols=264  Identities=18%  Similarity=0.126  Sum_probs=190.6

Q ss_pred             eEeccC--CCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEE
Q 005958           92 DRVSIG--LSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYV  165 (667)
Q Consensus        92 ~~LG~G--~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~  165 (667)
                      ..||.|  +||    +||+|.+..     +++.||+|++....    ..+.+.+|+.+++.+      +||||+++++++
T Consensus         4 ~~ig~g~~~~~----~v~~a~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l------~h~niv~~~~~~   68 (328)
T cd08226           4 VEIGRGFCNLT----SVYLARHTP-----TGTLVTVRITDLENCTEEHLKALQNEVVLSHFF------RHPNIMTSWTVF   68 (328)
T ss_pred             HHhCCcccCce----eEEEEEEcC-----CCcEEEEEEeccccCCHHHHHHHHHHHHHHHhC------CCCCcceEeeeE
Confidence            456776  777    999999987     79999999987422    234568899988888      499999999999


Q ss_pred             EecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHH
Q 005958          166 SSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVN  245 (667)
Q Consensus       166 ~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~  245 (667)
                      .     .++..++||| |+.+|+|.+++.+...       ..+++                    ..++.++.||+.||+
T Consensus        69 ~-----~~~~~~~v~e-~~~~~~l~~~l~~~~~-------~~~~~--------------------~~~~~~~~qi~~aL~  115 (328)
T cd08226          69 T-----TGSWLWVISP-FMAYGSANSLLKTYFP-------EGMSE--------------------ALIGNILFGALRGLN  115 (328)
T ss_pred             e-----cCCceEEEEe-cccCCCHHHHHHhhcc-------cCCCH--------------------HHHHHHHHHHHHHHH
Confidence            9     7788999999 9999999999886421       12333                    567889999999999


Q ss_pred             HHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC----------------CCCCCCCcccccCC-CCCCchhhHH
Q 005958          246 YLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE----------------DGPNNSSPDSNMDR-RQMMIAFDMR  308 (667)
Q Consensus       246 yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~----------------~~~~Y~APE~l~~~-~~ys~ksDIW  308 (667)
                      |||++||+||||||+|||++. ++.++++|||.+.....                ....|+|||++.+. ..++.++|||
T Consensus       116 ~lH~~~ivHrDlkp~Nill~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diw  194 (328)
T cd08226         116 YLHQNGYIHRNIKASHILISG-DGLVSLSGLSHLYSLVRNGQKAKVVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIY  194 (328)
T ss_pred             HHHhCCeecCCCCHHHEEEeC-CCcEEEechHHHhhhhccCccccccccccccccCccCccChhhhcCCCCCCCchhhHH
Confidence            999999999999999999998 89999999985432211                11359999976543 4578999999


Q ss_pred             HHHHHHHHHHhCCCCChhhhhhhhhhh-ccCCC--h-------hHHHHHHH-----------HHhcc----CCCCCCCCc
Q 005958          309 CVGFMMAKMVLRELMDPLIFTKFKSFL-TKGID--P-------SCLREFLL-----------QVLNR----NSSSGNTGF  363 (667)
Q Consensus       309 SLGviLyemltG~~PF~~~~~~~~~~~-~~g~~--~-------~~l~~~~~-----------~~~~~----~~~~~~~~~  363 (667)
                      |+||++|||++|.+||........... ..+.+  +       ........           .....    .........
T Consensus       195 slG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (328)
T cd08226         195 SVGITACELATGRVPFQDMLRTQMLLQKLKGPPYSPLDITTFPCEESRMKNSQSGVDSGIGESVVAAGMTQTMTSERLRT  274 (328)
T ss_pred             HHHHHHHHHHhCCCCCCCcChHHHHHHHhcCCCCCCccccccchhhhhhccchhhhhcccccchhccccccccccccccc
Confidence            999999999999999974321111000 00000  0       00000000           00000    000000011


Q ss_pred             ccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          364 QILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       364 ~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      +.....++++++||.+||++||++|||++|+|+||||....
T Consensus       275 ~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l~~~~~~~~~  315 (328)
T cd08226         275 PSSKTFSPAFQNLVELCLQQDPEKRPSASSLLSHAFFKQVK  315 (328)
T ss_pred             hhhhhhhHHHHHHHHHHccCCcccCCCHHHHhhCHHHHHHH
Confidence            12234677899999999999999999999999999997754

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=1.9e-36  Score=313.52  Aligned_cols=262  Identities=26%  Similarity=0.354  Sum_probs=201.0

Q ss_pred             eEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           88 FKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        88 y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      |++.+.||+|.||    .||+|.+..     +++.||+|++....    ..+...+|+.+++.+.      |+||+++++
T Consensus         1 y~~~~~ig~g~~~----~vy~~~~~~-----~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~------~~~i~~~~~   65 (282)
T cd07829           1 YEKLEKLGEGTYG----VVYKARDKK-----TGEIVALKKIRLDNEEEGIPSTALREISLLKELK------HPNIVKLLD   65 (282)
T ss_pred             CeeehcccccCcc----eEEEeeecC-----CCcEEEEEEeccccccccccHHHHHHHHHHHhcC------CCCHHHHHh
Confidence            6788999999999    999999997     79999999987632    2345678999999994      999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++.     +.+..++||| |+++ +|.+++.+..        ..+++                    ..+..++.|++.|
T Consensus        66 ~~~-----~~~~~~~v~e-~~~~-~l~~~i~~~~--------~~~~~--------------------~~~~~~~~~i~~~  110 (282)
T cd07829          66 VIH-----TERKLYLVFE-YCDM-DLKKYLDKRP--------GPLSP--------------------NLIKSIMYQLLRG  110 (282)
T ss_pred             hhh-----cCCceEEEec-CcCc-CHHHHHHhhc--------cCCCH--------------------HHHHHHHHHHHHH
Confidence            998     6789999999 9986 9999998752        13443                    4577899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      |.|||++||+||||+|+||+++. ++.++|+|||.+......         ...|+|||.+.+...++.++|||||||++
T Consensus       111 l~~LH~~~i~H~~l~~~ni~~~~-~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l  189 (282)
T cd07829         111 LAYCHSHRILHRDLKPQNILINR-DGVLKLADFGLARAFGIPLRTYTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIF  189 (282)
T ss_pred             HHHHHHCCcccCCCChheEEEcC-CCCEEEecCCcccccCCCccccCccccCcCcCChHHhcCCcCCCccccHHHHHHHH
Confidence            99999999999999999999998 899999999998765432         25699999776665789999999999999


Q ss_pred             HHHHhCCCCChhhh---hhhhhhhccCCChhHHHHHHHHHh--ccCCCC-C-CCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          315 AKMVLRELMDPLIF---TKFKSFLTKGIDPSCLREFLLQVL--NRNSSS-G-NTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       315 yemltG~~PF~~~~---~~~~~~~~~g~~~~~l~~~~~~~~--~~~~~~-~-~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      |||++|.+||....   ....+....+.+.......+....  ....+. . .......+..+.++.++|.+||..||++
T Consensus       190 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~  269 (282)
T cd07829         190 AEMITGKPLFPGDSEIDQLFKIFQILGTPTEESWPGVTKLPDYKPTFPKFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAK  269 (282)
T ss_pred             HHHHhCCCCCCCccHHHHHHHHHHHhCCCcHHHHHhhcccccccccccccCccchHHhcccccHHHHHHHHHhhccCccc
Confidence            99999999996321   222222222333222111111110  000000 0 0001223445789999999999999999


Q ss_pred             CCCHHHHHcCCCC
Q 005958          388 RISCLDALRHPFL  400 (667)
Q Consensus       388 RpSa~elL~HPwf  400 (667)
                      ||++.++++||||
T Consensus       270 Rp~~~~~l~~p~~  282 (282)
T cd07829         270 RISAKEALKHPYF  282 (282)
T ss_pred             CCCHHHHhhCcCC
Confidence            9999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=100.00  E-value=5.1e-36  Score=313.41  Aligned_cols=246  Identities=17%  Similarity=0.230  Sum_probs=197.0

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCCCcceEEEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGY  164 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~  164 (667)
                      .|...+.||+|++|    .||+|.+..     +++.||+|.+...  ...+.+.+|+.+++.+      +||||++++++
T Consensus        20 ~~~~~~~lg~g~~g----~v~~~~~~~-----~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~------~h~~vv~~~~~   84 (285)
T cd06648          20 YLDNFVKIGEGSTG----IVCIATDKS-----TGRQVAVKKMDLRKQQRRELLFNEVVIMRDY------QHPNIVEMYSS   84 (285)
T ss_pred             hhhcceEeccCCCe----EEEEEEECC-----CCCEEEEEEEeccchhHHHHHHHHHHHHHHc------CCCChheEEEE
Confidence            45556799999999    999999987     7899999998642  2334568899999999      49999999999


Q ss_pred             EEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHH
Q 005958          165 VSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGV  244 (667)
Q Consensus       165 ~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL  244 (667)
                      +.     ..+..++|+| |+.+++|.+++...          ++++                    ..+..++.|++.||
T Consensus        85 ~~-----~~~~~~~v~e-~~~~~~L~~~~~~~----------~~~~--------------------~~~~~~~~ql~~~l  128 (285)
T cd06648          85 YL-----VGDELWVVME-FLEGGALTDIVTHT----------RMNE--------------------EQIATVCLAVLKAL  128 (285)
T ss_pred             EE-----cCCeEEEEEe-ccCCCCHHHHHHhC----------CCCH--------------------HHHHHHHHHHHHHH
Confidence            98     7788999999 99999999998762          3443                    45678999999999


Q ss_pred             HHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHHHHH
Q 005958          245 NYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMA  315 (667)
Q Consensus       245 ~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLy  315 (667)
                      +|||++||+||||+|+||+++. ++.++|+|||.+.....         +.+.|+|||.+. ...++.++||||+||++|
T Consensus       129 ~~lH~~~i~H~dl~p~Nil~~~-~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Dv~slGv~l~  206 (285)
T cd06648         129 SFLHAQGVIHRDIKSDSILLTS-DGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPEVIS-RLPYGTEVDIWSLGIMVI  206 (285)
T ss_pred             HHHHhCCeecCCCChhhEEEcC-CCcEEEcccccchhhccCCcccccccCCccccCHHHhc-CCCCCCcccHHHHHHHHH
Confidence            9999999999999999999998 89999999998865432         235799999654 456899999999999999


Q ss_pred             HHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHH
Q 005958          316 KMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDAL  395 (667)
Q Consensus       316 emltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL  395 (667)
                      +|++|+.||..            ..+......+.   ....+    .......++..+.+||.+||+.||++|||+.+++
T Consensus       207 ell~g~~p~~~------------~~~~~~~~~~~---~~~~~----~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il  267 (285)
T cd06648         207 EMVDGEPPYFN------------EPPLQAMKRIR---DNLPP----KLKNLHKVSPRLRSFLDRMLVRDPAQRATAAELL  267 (285)
T ss_pred             HHHhCCCCCcC------------CCHHHHHHHHH---hcCCC----CCcccccCCHHHHHHHHHHcccChhhCcCHHHHc
Confidence            99999999842            11211111111   11111    1112234678999999999999999999999999


Q ss_pred             cCCCCCCCC
Q 005958          396 RHPFLCGPR  404 (667)
Q Consensus       396 ~HPwf~~~~  404 (667)
                      +||||+...
T Consensus       268 ~~~~~~~~~  276 (285)
T cd06648         268 NHPFLAKAG  276 (285)
T ss_pred             cCcccccCC
Confidence            999998866

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=100.00  E-value=3.4e-36  Score=309.38  Aligned_cols=241  Identities=16%  Similarity=0.173  Sum_probs=191.0

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ..++|++.+.||+|+||    +||+|.+..      +..||+|.+.... ....+.+|+.+++++      +||||++++
T Consensus         2 ~~~~~~~~~~lg~G~~~----~vy~~~~~~------~~~~aik~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~   65 (256)
T cd05113           2 DPKDLTFLKELGTGQFG----VVKYGKWRG------QYDVAIKMIKEGSMSEDEFIEEAKVMMKL------SHEKLVQLY   65 (256)
T ss_pred             ChHHeEEeeEecCcccc----eEEEEEecC------CCcEEEEEcCCCcccHHHHHHHHHHHhcC------CCCCeeeEE
Confidence            34689999999999999    999998764      4569999987532 245678899999999      499999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     ....+++||| |+.+|+|.+++....        ..+++                    ..+..++.||+.
T Consensus        66 ~~~~-----~~~~~~lv~e-~~~~~~l~~~i~~~~--------~~~~~--------------------~~~~~~~~~i~~  111 (256)
T cd05113          66 GVCT-----KQRPIYIVTE-YMSNGCLLNYLREHG--------KRFQP--------------------SQLLEMCKDVCE  111 (256)
T ss_pred             EEEc-----cCCCcEEEEE-cCCCCcHHHHHHhcC--------CCCCH--------------------HHHHHHHHHHHH
Confidence            9998     6678999999 999999999997642        12343                    457889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC----------CCCCCcccccCCCCCCchhhHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG----------PNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~----------~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      ||.|||++||+|+||||+||+++. ++.+||+|||.++......          ..|+|||.+. ...++.++|||||||
T Consensus       112 ~l~~lH~~~i~H~dl~p~nili~~-~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~~pe~~~-~~~~~~~~Di~slG~  189 (256)
T cd05113         112 GMAYLESKQFIHRDLAARNCLVDD-QGCVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLL-YSKFSSKSDVWAFGV  189 (256)
T ss_pred             HHHHHHhCCeeccccCcceEEEcC-CCCEEECCCccceecCCCceeecCCCccChhhCCHHHHh-cCcccchhHHHHHHH
Confidence            999999999999999999999998 8999999999987543221          3599999554 445899999999999


Q ss_pred             HHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH
Q 005958          313 MMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC  391 (667)
Q Consensus       313 iLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa  391 (667)
                      ++|+|++ |..||...            ........+   .....      .......++.+++++.+||+.||++||++
T Consensus       190 ~l~~l~~~g~~p~~~~------------~~~~~~~~~---~~~~~------~~~~~~~~~~~~~li~~cl~~~p~~Rp~~  248 (256)
T cd05113         190 LMWEVYSLGKMPYERF------------NNSETVEKV---SQGLR------LYRPHLASEKVYAIMYSCWHEKAEERPTF  248 (256)
T ss_pred             HHHHHhcCCCCCcCcC------------CHHHHHHHH---hcCCC------CCCCCCCCHHHHHHHHHHcCCCcccCCCH
Confidence            9999998 99988421            111121221   11111      11123357899999999999999999999


Q ss_pred             HHHHcC
Q 005958          392 LDALRH  397 (667)
Q Consensus       392 ~elL~H  397 (667)
                      .+++++
T Consensus       249 ~~ll~~  254 (256)
T cd05113         249 QQLLSS  254 (256)
T ss_pred             HHHHHh
Confidence            999864

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=100.00  E-value=5.5e-36  Score=312.65  Aligned_cols=255  Identities=17%  Similarity=0.265  Sum_probs=199.8

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh------hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ------AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~------~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      +|++.+.||+|+||    .||+|++...  ..+++.||||.++...      ..+...+|++++..++     +||||++
T Consensus         1 ~~~~~~~ig~G~~~----~vy~~~~~~~--~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~-----~~~~i~~   69 (288)
T cd05583           1 NFELLRVLGTGAYG----KVFLVRKVGG--HDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVR-----RCPFLVT   69 (288)
T ss_pred             CceEEEEeccCCCc----eEEEEEEecc--ccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhcc-----CCcchhh
Confidence            58999999999999    9999987532  1267899999987522      2244678999999997     6999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++.+.     .+...|+||| |+++|+|.+++....         .+++                    ..++.++.|+
T Consensus        70 ~~~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~~---------~~~~--------------------~~~~~~~~ql  114 (288)
T cd05583          70 LHYAFQ-----TDTKLHLILD-YVNGGELFTHLYQRE---------HFTE--------------------SEVRVYIAEI  114 (288)
T ss_pred             hheeee-----cCCEEEEEEe-cCCCCcHHHHHhhcC---------CcCH--------------------HHHHHHHHHH
Confidence            999998     7788999999 999999999987643         3444                    4567799999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC----------CCCCCCCcccccCCC-CCCchhhHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE----------DGPNNSSPDSNMDRR-QMMIAFDMRC  309 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~----------~~~~Y~APE~l~~~~-~ys~ksDIWS  309 (667)
                      +.||.|||+.|++||||||.||+++. ++.++|+|||++..+..          +...|+|||.+.+.. .++.++||||
T Consensus       115 ~~~l~~lH~~~~~H~dl~p~nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~s  193 (288)
T cd05583         115 VLALDHLHQLGIIYRDIKLENILLDS-EGHVVLTDFGLSKEFLAEEEERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWS  193 (288)
T ss_pred             HHHHHHHHHCCeeccCCCHHHeEECC-CCCEEEEECccccccccccccccccccCCccccCHHHhcCCCCCCcchhhhHH
Confidence            99999999999999999999999998 88999999999876432          235799999655433 3688999999


Q ss_pred             HHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          310 VGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       310 LGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      ||+++|||++|..||....           ......+.........       .+....++.++.+||.+||+.||++||
T Consensus       194 lG~il~el~tg~~p~~~~~-----------~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~li~~~l~~~p~~R~  255 (288)
T cd05583         194 LGVLTFELLTGASPFTVDG-----------EQNSQSEISRRILKSK-------PPFPKTMSAEARDFIQKLLEKDPKKRL  255 (288)
T ss_pred             HHHHHHHHHhCCCCcccCc-----------ccchHHHHHHHHHccC-------CCCCcccCHHHHHHHHHHhcCCHhhcc
Confidence            9999999999999985210           0011112222222111       122344678999999999999999999


Q ss_pred             C---HHHHHcCCCCCCCCCC
Q 005958          390 S---CLDALRHPFLCGPRWR  406 (667)
Q Consensus       390 S---a~elL~HPwf~~~~~~  406 (667)
                      |   +.++|+||||+...|.
T Consensus       256 t~~~~~~~l~~~~~~~~~~~  275 (288)
T cd05583         256 GANGADEIKNHPFFQGIDWD  275 (288)
T ss_pred             CcchHHHHhcCcccccCCHH
Confidence            8   5678999999998863

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=100.00  E-value=8.4e-36  Score=309.55  Aligned_cols=268  Identities=23%  Similarity=0.298  Sum_probs=194.5

Q ss_pred             eEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           88 FKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        88 y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      |++.+.||.|+||    .||+|.++.     +++.||+|.+....    ......+|+.++++++   .++||||+++++
T Consensus         1 y~~~~~l~~g~~~----~v~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~---~~~h~~i~~~~~   68 (287)
T cd07838           1 YEELAEIGEGAYG----TVYKARDLN-----TGRFVALKKVRVPLSEEGIPLSTLREIALLKQLE---SFEHPNIVRLLD   68 (287)
T ss_pred             CeEEEEecccCce----EEEEEEECC-----CCCEEEEEEeccccccchhhhhHHHHHHHHHHhh---ccCCCCcceEEE
Confidence            7889999999999    999999987     78999999997422    1234567888888874   336999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++...........+++|| |+++ +|.+++.....       ..+++                    ..++.++.|++.|
T Consensus        69 ~~~~~~~~~~~~~~l~~e-~~~~-~l~~~l~~~~~-------~~l~~--------------------~~~~~~~~~i~~a  119 (287)
T cd07838          69 VCHGPRTDRELKLTLVFE-HVDQ-DLATYLSKCPK-------PGLPP--------------------ETIKDLMRQLLRG  119 (287)
T ss_pred             EEeeccCCCCceeEEEeh-hccc-CHHHHHHHccC-------CCCCH--------------------HHHHHHHHHHHHH
Confidence            998442222335999999 9986 89999876421       12443                    5678899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMA  315 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSLGviLy  315 (667)
                      |.|||++||+|+||+|+||+++. ++.+||+|||.+......        ...|+|||.+. ...++.++||||+||++|
T Consensus       120 l~~LH~~~i~h~~l~~~nili~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~PE~~~-~~~~~~~~Di~s~G~~l~  197 (287)
T cd07838         120 VDFLHSHRIVHRDLKPQNILVTS-DGQVKIADFGLARIYSFEMALTSVVVTLWYRAPEVLL-QSSYATPVDMWSVGCIFA  197 (287)
T ss_pred             HHHHHHCCeeeccCChhhEEEcc-CCCEEEeccCcceeccCCcccccccccccccChHHhc-cCCCCCcchhhhHHHHHH
Confidence            99999999999999999999999 799999999999766433        24699999654 455899999999999999


Q ss_pred             HHHhCCCCChhhhh---hhhhhhccCCChhH-HHHH---HHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCC
Q 005958          316 KMVLRELMDPLIFT---KFKSFLTKGIDPSC-LREF---LLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  388 (667)
Q Consensus       316 emltG~~PF~~~~~---~~~~~~~~g~~~~~-l~~~---~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kR  388 (667)
                      +|++|.+||.....   ..+++...+.+... +...   .........  ........+..++++.+||.+||+.||++|
T Consensus       198 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~li~~~l~~dp~~R  275 (287)
T cd07838         198 ELFRRRPLFRGTSEADQLDKIFDVIGLPSEEEWPRNVSLPRSSFPSYT--PRSFKSFVPEICEEGLDLLKKMLTFNPHKR  275 (287)
T ss_pred             HHHhCCCcccCCChHHHHHHHHHHcCCCChHhcCCCcccchhhccccc--ccchhhhhhhhhHHHHHHHHHHhccCCccC
Confidence            99999999863211   11111111100000 0000   000000000  000011223456889999999999999999


Q ss_pred             CCHHHHHcCCCC
Q 005958          389 ISCLDALRHPFL  400 (667)
Q Consensus       389 pSa~elL~HPwf  400 (667)
                      |++.|+++||||
T Consensus       276 p~~~~il~~~~~  287 (287)
T cd07838         276 ISAFEALQHPYF  287 (287)
T ss_pred             CCHHHHhcCcCC
Confidence            999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=100.00  E-value=1.6e-36  Score=318.55  Aligned_cols=248  Identities=21%  Similarity=0.235  Sum_probs=199.5

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      .++|++.+.||+|+||    .||++.+..     +++.||+|.+...  ...+.+.+|+.+++.++      ||||++++
T Consensus        18 ~~~~~~~~~lg~g~~g----~v~~~~~~~-----~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~------hp~i~~~~   82 (293)
T cd06647          18 KKKYTRFEKIGQGASG----TVYTAIDVA-----TGQEVAIKQMNLQQQPKKELIINEILVMRENK------HPNIVNYL   82 (293)
T ss_pred             hhhceeeeEecCCCCe----EEEEEEEcC-----CCCEEEEEEeccccchHHHHHHHHHHHHhhcC------CCCeeehh
Confidence            3789999999999999    999999887     7899999998642  23355688999999984      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     ..+..|+|+| |+++|+|.+++.+.          .+++                    ..+..++.|++.
T Consensus        83 ~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~----------~l~~--------------------~~~~~i~~~l~~  126 (293)
T cd06647          83 DSYL-----VGDELWVVME-YLAGGSLTDVVTET----------CMDE--------------------GQIAAVCRECLQ  126 (293)
T ss_pred             heee-----eCCcEEEEEe-cCCCCcHHHHHhhc----------CCCH--------------------HHHHHHHHHHHH
Confidence            9998     6788999999 99999999999753          2333                    456789999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      ||.|||++|++|+||||+||+++. ++.+||+|||++......         .+.|+|||.+. ...++.++|+|||||+
T Consensus       127 al~~LH~~gi~H~dL~p~Nili~~-~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~-~~~~~~~~Dv~slG~l  204 (293)
T cd06647         127 ALEFLHSNQVIHRDIKSDNILLGM-DGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVT-RKAYGPKVDIWSLGIM  204 (293)
T ss_pred             HHHHHHhCCEeeccCCHHHEEEcC-CCCEEEccCcceecccccccccccccCChhhcCchhhc-cCCCCchhhHHHHHHH
Confidence            999999999999999999999998 889999999988654432         24599999654 4568999999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      +|+|++|++||........           +..    ....    ....+......+..+++||.+||..||++||++.+
T Consensus       205 l~~ll~g~~pf~~~~~~~~-----------~~~----~~~~----~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~  265 (293)
T cd06647         205 AIEMVEGEPPYLNENPLRA-----------LYL----IATN----GTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKE  265 (293)
T ss_pred             HHHHHhCCCCCCCCChhhh-----------eee----hhcC----CCCCCCCccccCHHHHHHHHHHccCChhhCcCHHH
Confidence            9999999999963211100           000    0000    01112223346778999999999999999999999


Q ss_pred             HHcCCCCCCCC
Q 005958          394 ALRHPFLCGPR  404 (667)
Q Consensus       394 lL~HPwf~~~~  404 (667)
                      ++.||||+...
T Consensus       266 il~h~~~~~~~  276 (293)
T cd06647         266 LLQHPFLKIAK  276 (293)
T ss_pred             HhcCHHHhcCc
Confidence            99999998765

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=6.8e-36  Score=311.04  Aligned_cols=259  Identities=22%  Similarity=0.246  Sum_probs=192.3

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--hHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      .+|++.+.||+|+||    .||+|..... +..+++.||+|.+....  ..+.+.+|+++++.++      ||||+++++
T Consensus         4 ~~~~~~~~lg~g~~g----~v~~~~~~~~-~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~------h~~iv~~~~   72 (284)
T cd05081           4 RHLKFIQQLGKGNFG----SVELCRYDPL-QDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQ------HDNIVKYKG   72 (284)
T ss_pred             ccceeeeeccCCCCc----eEEEEEecCC-cCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCC------CCCeeEEEE
Confidence            579999999999999    9999985421 11268899999987532  2346789999999995      999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++...   +...+++||| |+++|+|.+++....        ..+++                    ..+..++.||+.|
T Consensus        73 ~~~~~---~~~~~~lv~e-~~~~~~L~~~l~~~~--------~~l~~--------------------~~~~~~~~~l~~a  120 (284)
T cd05081          73 VCYSA---GRRNLRLVME-YLPYGSLRDYLQKHR--------ERLDH--------------------RKLLLYASQICKG  120 (284)
T ss_pred             EEccC---CCCceEEEEE-ecCCCCHHHHHHhcC--------cCCCH--------------------HHHHHHHHHHHHH
Confidence            87633   4567999999 999999999997542        12343                    4567799999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC------------CCCCCcccccCCCCCCchhhHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG------------PNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~------------~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      |+|||++||+||||||+||+++. ++.+||+|||++.......            ..|+|||.+. ...++.++||||||
T Consensus       121 L~~LH~~~i~H~dlkp~nili~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~slG  198 (284)
T cd05081         121 MEYLGSKRYVHRDLATRNILVES-ENRVKIGDFGLTKVLPQDKEYYKVREPGESPIFWYAPESLT-ESKFSVASDVWSFG  198 (284)
T ss_pred             HHHHHHCCceeccCCHhhEEECC-CCeEEECCCcccccccCCCcceeecCCCCCceEeeCHHHhc-cCCcChHHHHHHHH
Confidence            99999999999999999999998 8999999999998654321            2489999654 45689999999999


Q ss_pred             HHHHHHHhCCCCChhhhhhhhhhhccCCCh--hHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          312 FMMAKMVLRELMDPLIFTKFKSFLTKGIDP--SCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       312 viLyemltG~~PF~~~~~~~~~~~~~g~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      |++|||++|..++......+..  ..+...  ......+...+...     ...+....++.++.+||.+||..||++||
T Consensus       199 ~~l~el~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~li~~cl~~~p~~Rp  271 (284)
T cd05081         199 VVLYELFTYSDKSCSPPAEFMR--MMGNDKQGQMIVYHLIELLKNN-----GRLPAPPGCPAEIYAIMKECWNNDPSQRP  271 (284)
T ss_pred             HHHHHHhhcCCcCCCcchhhhh--hcccccccccchHHHHHHHhcC-----CcCCCCCCCCHHHHHHHHHHccCChhhCC
Confidence            9999999987765422111110  011110  00111111111111     11233456788999999999999999999


Q ss_pred             CHHHHHc
Q 005958          390 SCLDALR  396 (667)
Q Consensus       390 Sa~elL~  396 (667)
                      |+.++++
T Consensus       272 t~~ei~~  278 (284)
T cd05081         272 SFSELAL  278 (284)
T ss_pred             CHHHHHH
Confidence            9999976

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=100.00  E-value=5.4e-37  Score=318.45  Aligned_cols=245  Identities=18%  Similarity=0.248  Sum_probs=196.7

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      +.|+..+.||+|+||    .||+|.+..     +++.||+|.+....   ..+.+.+|+.+++++      +||||++++
T Consensus         4 ~~y~~~~~l~~g~~~----~vy~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~   68 (277)
T cd06642           4 ELFTKLERIGKGSFG----EVYKGIDNR-----TKEVVAIKIIDLEEAEDEIEDIQQEITVLSQC------DSPYITRYY   68 (277)
T ss_pred             HHHHHHHHhcCCCCe----eEEEEEEcC-----CCeEEEEEEeccccchHHHHHHHHHHHHHHcC------CCCccHhhh
Confidence            347778889999999    999999987     78999999987432   234568899999999      499999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     ..+..|+||| |+++++|.+++...          .+++                    ..++.++.||+.
T Consensus        69 ~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~----------~~~~--------------------~~~~~~~~~i~~  112 (277)
T cd06642          69 GSYL-----KGTKLWIIME-YLGGGSALDLLKPG----------PLEE--------------------TYIATILREILK  112 (277)
T ss_pred             cccc-----cCCceEEEEE-ccCCCcHHHHhhcC----------CCCH--------------------HHHHHHHHHHHH
Confidence            9998     7788999999 99999999998642          3444                    457789999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      ||.|||++||+|+||+|+||+++. ++.++|+|||++......         ...|+|||.+. ...++.++|+|||||+
T Consensus       113 ~l~~lH~~~ivH~dl~p~ni~i~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Dv~slG~i  190 (277)
T cd06642         113 GLDYLHSERKIHRDIKAANVLLSE-QGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIK-QSAYDFKADIWSLGIT  190 (277)
T ss_pred             HHHHHhcCCeeccCCChheEEEeC-CCCEEEccccccccccCcchhhhcccCcccccCHHHhC-cCCCchhhhHHHHHHH
Confidence            999999999999999999999998 899999999999765432         25699999654 4568999999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      +|||++|.+||.....            ......   ......      .......+.++.+||.+||+.+|++||++.+
T Consensus       191 l~el~tg~~p~~~~~~------------~~~~~~---~~~~~~------~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~  249 (277)
T cd06642         191 AIELAKGEPPNSDLHP------------MRVLFL---IPKNSP------PTLEGQYSKPFKEFVEACLNKDPRFRPTAKE  249 (277)
T ss_pred             HHHHHhCCCCCcccch------------hhHHhh---hhcCCC------CCCCcccCHHHHHHHHHHccCCcccCcCHHH
Confidence            9999999999853211            111111   000000      1122346778999999999999999999999


Q ss_pred             HHcCCCCCCCC
Q 005958          394 ALRHPFLCGPR  404 (667)
Q Consensus       394 lL~HPwf~~~~  404 (667)
                      +++||||....
T Consensus       250 il~~~~~~~~~  260 (277)
T cd06642         250 LLKHKFITRYT  260 (277)
T ss_pred             HHHhHHHHHHh
Confidence            99999997644

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=100.00  E-value=7.8e-36  Score=315.10  Aligned_cols=267  Identities=16%  Similarity=0.157  Sum_probs=200.7

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCC--CCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSN--SPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMY  154 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~--~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~  154 (667)
                      .+....++|.+.+.||+|+||    .||+|.+....  ...+...||+|.+...   .....+.+|+.+++.+.     .
T Consensus        12 ~~~~~~~~~~i~~~lg~G~~g----~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~-----~   82 (307)
T cd05098          12 RWEVPRDRLVLGKPLGEGCFG----QVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIG-----K   82 (307)
T ss_pred             cceeehHHeEEeeeeccCCCe----eEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhc-----C
Confidence            344556899999999999999    99999875421  1123467999999753   22345678999999995     5


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      ||||+++++++.     ..+..|+||| |+++|+|.+++..+..... +.  .+.          ....+...++...+.
T Consensus        83 h~~i~~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~i~~~~~~~~-~~--~~~----------~~~~~~~~l~~~~~~  143 (307)
T cd05098          83 HKNIINLLGACT-----QDGPLYVIVE-YASKGNLREYLRARRPPGM-EY--CYN----------PTQVPEEQLSFKDLV  143 (307)
T ss_pred             CCCEeeEEEEEe-----cCCceEEEEe-cCCCCcHHHHHHhcCCccc-cc--ccc----------cccCccccCCHHHHH
Confidence            999999999998     7788999999 9999999999987531100 00  000          000111234456788


Q ss_pred             HHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCc
Q 005958          235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMI  303 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~  303 (667)
                      .++.|++.||+|||++||+||||||+||+++. ++.+||+|||++......           ...|+|||.+. ...++.
T Consensus       144 ~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~~-~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~  221 (307)
T cd05098         144 SCAYQVARGMEYLASKKCIHRDLAARNVLVTE-DNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALF-DRIYTH  221 (307)
T ss_pred             HHHHHHHHHHHHHHHCCcccccccHHheEEcC-CCcEEECCCcccccccccchhhccccCCCccceeChHHhc-cCCCCc
Confidence            99999999999999999999999999999998 899999999998754321           14699999654 455899


Q ss_pred             hhhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhh
Q 005958          304 AFDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLA  382 (667)
Q Consensus       304 ksDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~  382 (667)
                      ++|||||||++|||++ |.+||.            +.+...+...+..   ..      ........+.++++||.+||.
T Consensus       222 ~~DvwslG~~l~el~~~g~~p~~------------~~~~~~~~~~~~~---~~------~~~~~~~~~~~~~~li~~~l~  280 (307)
T cd05098         222 QSDVWSFGVLLWEIFTLGGSPYP------------GVPVEELFKLLKE---GH------RMDKPSNCTNELYMMMRDCWH  280 (307)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCC------------cCCHHHHHHHHHc---CC------CCCCCCcCCHHHHHHHHHHcc
Confidence            9999999999999998 888874            3333333333221   11      112334578899999999999


Q ss_pred             cCcCCCCCHHHHHcC
Q 005958          383 TKPSKRISCLDALRH  397 (667)
Q Consensus       383 ~DP~kRpSa~elL~H  397 (667)
                      .+|++|||+.+++++
T Consensus       281 ~~p~~Rps~~evl~~  295 (307)
T cd05098         281 AVPSQRPTFKQLVED  295 (307)
T ss_pred             cChhhCcCHHHHHHH
Confidence            999999999999864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.4e-36  Score=308.86  Aligned_cols=240  Identities=17%  Similarity=0.185  Sum_probs=191.4

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      ..+|++.+.||+|+||    .||+|.+.      ++..+|+|++.... ....+.+|+++++.++      ||||+++++
T Consensus         3 ~~~~~~~~~lg~G~~~----~v~~~~~~------~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~------~~~i~~~~~   66 (256)
T cd05059           3 PSELTFLKELGSGQFG----VVHLGKWR------GKIDVAIKMIREGAMSEDDFIEEAKVMMKLS------HPNLVQLYG   66 (256)
T ss_pred             hHHcchhhhhccCCCc----eEEEeEec------CCccEEEEEeccCCCCHHHHHHHHHHHHhCC------CCCEEEEEE
Confidence            3578999999999999    99999886      36789999987532 3345778999999994      999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++.     ..+..|+||| |+++++|.+++..+.        ..+++                    ..+..++.||+.|
T Consensus        67 ~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~--------~~~~~--------------------~~~~~i~~qi~~~  112 (256)
T cd05059          67 VCT-----KQRPIFIVTE-YMANGCLLNYLRERK--------GKLGT--------------------EWLLDMCSDVCEA  112 (256)
T ss_pred             EEc-----CCCceEEEEe-cCCCCCHHHHHHhcc--------cCCCH--------------------HHHHHHHHHHHHH
Confidence            998     7788999999 999999999997643        13443                    4577899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC----------CCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG----------PNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~----------~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      |.|||++||+||||||+||+++. ++.+||+|||+++......          ..|+|||.+. ...++.++|||||||+
T Consensus       113 l~~lH~~~i~H~dl~p~ni~i~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~-~~~~~~~~Di~slG~i  190 (256)
T cd05059         113 MEYLESNGFIHRDLAARNCLVGE-DNVVKVSDFGLARYVLDDQYTSSQGTKFPVKWAPPEVFD-YSRFSSKSDVWSFGVL  190 (256)
T ss_pred             HHHHHHCCcccccccHhhEEECC-CCcEEECCcccceecccccccccCCCCCCccccCHHHhc-cCCCCchhhHHHHHHH
Confidence            99999999999999999999998 8999999999987543221          2599999554 4568999999999999


Q ss_pred             HHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHH
Q 005958          314 MAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCL  392 (667)
Q Consensus       314 Lyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~  392 (667)
                      +|+|++ |.+||..            .........+..   ..      ........+.++.+++.+||..+|++|||+.
T Consensus       191 l~~l~~~g~~p~~~------------~~~~~~~~~~~~---~~------~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~  249 (256)
T cd05059         191 MWEVFSEGKMPYER------------FSNSEVVESVSA---GY------RLYRPKLAPTEVYTIMYSCWHEKPEDRPAFK  249 (256)
T ss_pred             HHHHhccCCCCCCC------------CCHHHHHHHHHc---CC------cCCCCCCCCHHHHHHHHHHhcCChhhCcCHH
Confidence            999999 8988852            122222221111   10      1122345788999999999999999999999


Q ss_pred             HHHcC
Q 005958          393 DALRH  397 (667)
Q Consensus       393 elL~H  397 (667)
                      |+++.
T Consensus       250 ~~l~~  254 (256)
T cd05059         250 KLLSQ  254 (256)
T ss_pred             HHHHH
Confidence            99864

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=8.3e-36  Score=303.32  Aligned_cols=241  Identities=18%  Similarity=0.282  Sum_probs=198.3

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      +|++.+.||+|++|    .||+|.+..     +++.||+|.+....    ....+.+|++++++++      ||||++++
T Consensus         1 ~y~~~~~l~~g~~~----~v~~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~------~~~i~~~~   65 (254)
T cd06627           1 NYQLGDLIGRGAFG----VVYKGLNLE-----TGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLK------HPNIVKYI   65 (254)
T ss_pred             CceeeeEEcccCCe----EEEEEEEcC-----CCcEEEEEEecccccCHHHHHHHHHHHHHHHhCC------CCCccEEE
Confidence            58999999999999    999999987     78999999987643    3356789999999995      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     +.+..+++|| |+++++|.+++....         .+++                    ..+..++.|++.
T Consensus        66 ~~~~-----~~~~~~~v~e-~~~~~~L~~~~~~~~---------~l~~--------------------~~~~~~~~~i~~  110 (254)
T cd06627          66 GSIE-----TSDSLYIILE-YAENGSLRQIIKKFG---------PFPE--------------------SLVAVYVYQVLQ  110 (254)
T ss_pred             EEEE-----eCCEEEEEEe-cCCCCcHHHHHHhcc---------CCCH--------------------HHHHHHHHHHHH
Confidence            9998     7789999999 999999999998653         4444                    456789999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC---------CCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG---------PNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~---------~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      ||.|||++||+||||||+||+++. ++.++|+|||.+.......         ..|+|||.+.+ ..++.++||||+|++
T Consensus       111 ~l~~lH~~~i~H~dl~p~ni~i~~-~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~-~~~~~~~Dv~~lG~~  188 (254)
T cd06627         111 GLAYLHEQGVIHRDIKAANILTTK-DGVVKLADFGVATKLNDVSKDDASVVGTPYWMAPEVIEM-SGASTASDIWSLGCT  188 (254)
T ss_pred             HHHHHhhCCcccCCCCHHHEEECC-CCCEEEeccccceecCCCcccccccccchhhcCHhhhcC-CCCCcchhHHHHHHH
Confidence            999999999999999999999998 8999999999998665433         46999996544 448899999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      +|+|++|.+||.....           .......    ...      .........++++.++|.+||..+|++|||+.+
T Consensus       189 l~~l~~g~~p~~~~~~-----------~~~~~~~----~~~------~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~  247 (254)
T cd06627         189 VIELLTGNPPYYDLNP-----------MAALFRI----VQD------DHPPLPEGISPELKDFLMQCFQKDPNLRPTAKQ  247 (254)
T ss_pred             HHHHHhCCCCCCCccH-----------HHHHHHH----hcc------CCCCCCCCCCHHHHHHHHHHHhCChhhCcCHHH
Confidence            9999999999852211           0111111    111      111234567889999999999999999999999


Q ss_pred             HHcCCCC
Q 005958          394 ALRHPFL  400 (667)
Q Consensus       394 lL~HPwf  400 (667)
                      ++.||||
T Consensus       248 ~l~~~~~  254 (254)
T cd06627         248 LLKHPWI  254 (254)
T ss_pred             HhcCCCC
Confidence            9999998

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=100.00  E-value=9.5e-36  Score=313.76  Aligned_cols=267  Identities=16%  Similarity=0.164  Sum_probs=202.3

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCC--CCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDS--NSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMY  154 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~--~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~  154 (667)
                      .+.+..++|++.+.||+|+||    .||+|++...  .....+..||+|.+...   ...+.+.+|+.+++.+.     .
T Consensus         9 ~~~~~~~~~~~~~~lg~G~~g----~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~-----~   79 (304)
T cd05101           9 RWEFSRDKLTLGKPLGEGCFG----QVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIG-----K   79 (304)
T ss_pred             cccccHHHeeecceeeccCCc----eEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhc-----c
Confidence            345677899999999999999    9999986431  12234568999998752   23356789999999995     5


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      ||||+++++++.     ..+..|+||| |+++|+|.+++........     .+...        ....+...++...+.
T Consensus        80 h~~i~~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~~~~~-----~~~~~--------~~~~~~~~~~~~~~~  140 (304)
T cd05101          80 HKNIINLLGACT-----QDGPLYVIVE-YASKGNLREYLRARRPPGM-----EYSYD--------IARVPDEQMTFKDLV  140 (304)
T ss_pred             CCCchheeEEEe-----cCCceEEEEe-cCCCCcHHHHHHhcCCccc-----ccccc--------cccCCcccccHHHHH
Confidence            999999999998     7788999999 9999999999987532110     11100        001112245567789


Q ss_pred             HHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCc
Q 005958          235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMI  303 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~  303 (667)
                      .++.||+.||.|||++||+||||||+|||++. ++.+||+|||+++.....           ...|+|||++.+ ..|+.
T Consensus       141 ~~~~qi~~al~~LH~~givH~dlkp~Nili~~-~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~  218 (304)
T cd05101         141 SCTYQVARGMEYLASQKCIHRDLAARNVLVTE-NNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFD-RVYTH  218 (304)
T ss_pred             HHHHHHHHHHHHHHHCCeeecccccceEEEcC-CCcEEECCCccceecccccccccccCCCCCceeeCchhhcc-CCCCc
Confidence            99999999999999999999999999999998 899999999999765321           145999996544 56899


Q ss_pred             hhhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhh
Q 005958          304 AFDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLA  382 (667)
Q Consensus       304 ksDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~  382 (667)
                      ++|||||||++|+|++ |..||.            +.+...+.+.+..   ..      .......++.++++||.+||.
T Consensus       219 ~~Di~slG~~l~el~~~g~~p~~------------~~~~~~~~~~~~~---~~------~~~~~~~~~~~~~~li~~cl~  277 (304)
T cd05101         219 QSDVWSFGVLMWEIFTLGGSPYP------------GIPVEELFKLLKE---GH------RMDKPANCTNELYMMMRDCWH  277 (304)
T ss_pred             hhhHHHHHHHHHHHHcCCCCCcc------------cCCHHHHHHHHHc---CC------cCCCCCCCCHHHHHHHHHHcc
Confidence            9999999999999998 788874            2233333332211   11      111234578899999999999


Q ss_pred             cCcCCCCCHHHHHcC
Q 005958          383 TKPSKRISCLDALRH  397 (667)
Q Consensus       383 ~DP~kRpSa~elL~H  397 (667)
                      .+|++|||+.++++.
T Consensus       278 ~~p~~Rps~~e~l~~  292 (304)
T cd05101         278 AIPSHRPTFKQLVED  292 (304)
T ss_pred             cChhhCCCHHHHHHH
Confidence            999999999999874

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=100.00  E-value=4.5e-36  Score=311.76  Aligned_cols=244  Identities=20%  Similarity=0.263  Sum_probs=197.2

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      -|++.+.||.|+||    .||+|.+..     +++.||||.+....   ....+.+|+.+++.+      +||||+++++
T Consensus         5 ~~~~~~~ig~G~~~----~vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~   69 (277)
T cd06641           5 LFTKLEKIGKGSFG----EVFKGIDNR-----TQKVVAIKIIDLEEAEDEIEDIQQEITVLSQC------DSPYVTKYYG   69 (277)
T ss_pred             hhhhheeEeecCCe----EEEEEEECC-----CCcEEEEEEeccccchHHHHHHHHHHHHHHhc------CCCCEeEEEE
Confidence            47889999999999    999999987     78999999986432   234567899999999      4999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++.     .++..|+||| |+++|+|.+++...          .+++                    ..+..++.|++.|
T Consensus        70 ~~~-----~~~~~~lv~e-~~~~~~l~~~i~~~----------~~~~--------------------~~~~~~~~~l~~~  113 (277)
T cd06641          70 SYL-----KDTKLWIIME-YLGGGSALDLLEPG----------PLDE--------------------TQIATILREILKG  113 (277)
T ss_pred             EEE-----eCCeEEEEEE-eCCCCcHHHHHhcC----------CCCH--------------------HHHHHHHHHHHHH
Confidence            998     7789999999 99999999998742          3343                    4577899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      +.|||++||+|+||||+||+++. ++.++|+|||++......         ...|+|||.+. ...++.++|+||+||++
T Consensus       114 l~~lh~~~i~h~dl~p~Ni~i~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~-~~~~~~~~Dv~slG~~l  191 (277)
T cd06641         114 LDYLHSEKKIHRDIKAANVLLSE-HGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIK-QSAYDSKADIWSLGITA  191 (277)
T ss_pred             HHHHccCCeecCCCCHHhEEECC-CCCEEEeecccceecccchhhhccccCCccccChhhhc-cCCCCchhhHHHHHHHH
Confidence            99999999999999999999998 899999999998754432         35699999554 45678899999999999


Q ss_pred             HHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHH
Q 005958          315 AKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDA  394 (667)
Q Consensus       315 yemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~el  394 (667)
                      |+|++|.+||....            .......+   .....      ......++.++.++|.+||..||++||++.++
T Consensus       192 ~~l~~g~~p~~~~~------------~~~~~~~~---~~~~~------~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~  250 (277)
T cd06641         192 IELAKGEPPHSELH------------PMKVLFLI---PKNNP------PTLEGNYSKPLKEFVEACLNKEPSFRPTAKEL  250 (277)
T ss_pred             HHHHcCCCCCCccc------------hHHHHHHH---hcCCC------CCCCcccCHHHHHHHHHHccCChhhCcCHHHH
Confidence            99999999985221            11111111   11100      11233567899999999999999999999999


Q ss_pred             HcCCCCCCCC
Q 005958          395 LRHPFLCGPR  404 (667)
Q Consensus       395 L~HPwf~~~~  404 (667)
                      ++||||....
T Consensus       251 l~~~~~~~~~  260 (277)
T cd06641         251 LKHKFIVRFA  260 (277)
T ss_pred             HhCHHHhhhh
Confidence            9999998854

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=100.00  E-value=8.6e-36  Score=303.16  Aligned_cols=245  Identities=19%  Similarity=0.259  Sum_probs=198.9

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      +|++.+.||.|+||    .||+|.+..     +++.||+|++...    .....+.+|+++++.++      |||+++++
T Consensus         1 ~y~~~~~l~~g~~~----~v~~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~------~~~~~~~~   65 (258)
T cd08215           1 KYEIIKQIGKGSFG----KVYLVRRKS-----DGKLYVLKEIDLSNMSEKEREDALNEVKILKKLN------HPNIIKYY   65 (258)
T ss_pred             CceEEeeeccCCCe----EEEEEEEcC-----CCcEEEEEEeecccCChHHHHHHHHHHHHHHhcC------CCChhheE
Confidence            58999999999999    999999987     7899999999753    33456789999999995      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +.+.     .....++||| |+++++|.+++.....     ....+++                    ..+..++.|++.
T Consensus        66 ~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~~-----~~~~~~~--------------------~~~~~i~~~i~~  114 (258)
T cd08215          66 ESFE-----EKGKLCIVME-YADGGDLSQKIKKQKK-----EGKPFPE--------------------EQILDWFVQLCL  114 (258)
T ss_pred             EEEe-----cCCEEEEEEE-ecCCCcHHHHHHHhhc-----cCCCcCH--------------------HHHHHHHHHHHH
Confidence            9998     6789999999 9999999999987421     0013443                    567889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      ||.|||++|++|+||+|+||+++. ++.++|+|||.+......         .+.|+|||.+ ....++.++|+||+|++
T Consensus       115 ~l~~lh~~~~~H~dl~~~nil~~~-~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~-~~~~~~~~~Dv~slG~~  192 (258)
T cd08215         115 ALKYLHSRKILHRDIKPQNIFLTS-NGLVKLGDFGISKVLSSTVDLAKTVVGTPYYLSPELC-QNKPYNYKSDIWSLGCV  192 (258)
T ss_pred             HHHHHHhCCEecccCChHHeEEcC-CCcEEECCccceeecccCcceecceeeeecccChhHh-ccCCCCccccHHHHHHH
Confidence            999999999999999999999998 899999999999765443         2579999954 44558899999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      +|+|++|..||...            .......   .......      .+.....+.++.++|.+||..||++|||+.+
T Consensus       193 ~~~l~~g~~p~~~~------------~~~~~~~---~~~~~~~------~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~  251 (258)
T cd08215         193 LYELCTLKHPFEGE------------NLLELAL---KILKGQY------PPIPSQYSSELRNLVSSLLQKDPEERPSIAQ  251 (258)
T ss_pred             HHHHHcCCCCCCCC------------cHHHHHH---HHhcCCC------CCCCCCCCHHHHHHHHHHcCCChhhCcCHHH
Confidence            99999999998421            1111111   1111111      1122356789999999999999999999999


Q ss_pred             HHcCCCC
Q 005958          394 ALRHPFL  400 (667)
Q Consensus       394 lL~HPwf  400 (667)
                      +|+||||
T Consensus       252 ll~~~~~  258 (258)
T cd08215         252 ILQSPFI  258 (258)
T ss_pred             HhcCCCC
Confidence            9999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.8e-37  Score=331.74  Aligned_cols=252  Identities=16%  Similarity=0.218  Sum_probs=204.1

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-----HHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-----QRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-----~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      ..-|..++.||-|+||    +|-+++..+     |...||+|.+.+...     ...+..|-.||...      +.+.||
T Consensus       628 KSmFvkik~iGvGAFG----eV~Lv~KvD-----T~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEA------Dn~WVV  692 (1034)
T KOG0608|consen  628 KSMFVKIKTIGVGAFG----EVCLVRKVD-----TRALYAMKTLRKADVLMRNQVAHVKAERDILAEA------DNEWVV  692 (1034)
T ss_pred             ccceEEEeeecccccc----eeEEEeecc-----hhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhc------CCcceE
Confidence            3568999999999999    999999988     889999999987432     23457899999998      699999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      +||-.|+     +.+.+|+||+ |++|||+..+|.+.+         -|.|                    ..+++|+.+
T Consensus       693 rLyySFQ-----DkdnLYFVMd-YIPGGDmMSLLIrmg---------IFeE--------------------~LARFYIAE  737 (1034)
T KOG0608|consen  693 RLYYSFQ-----DKDNLYFVMD-YIPGGDMMSLLIRMG---------IFEE--------------------DLARFYIAE  737 (1034)
T ss_pred             EEEEEec-----cCCceEEEEe-ccCCccHHHHHHHhc---------cCHH--------------------HHHHHHHHH
Confidence            9999999     8899999999 999999999998865         4444                    467899999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeeccccccc---------CCC------------------------
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFY---------EDG------------------------  286 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~---------~~~------------------------  286 (667)
                      +..|+++.|..|+|||||||+||||+. +|+|||+|||+|.-+.         .+.                        
T Consensus       738 ltcAiesVHkmGFIHRDiKPDNILIDr-dGHIKLTDFGLCTGfRWTHdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~  816 (1034)
T KOG0608|consen  738 LTCAIESVHKMGFIHRDIKPDNILIDR-DGHIKLTDFGLCTGFRWTHDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLE  816 (1034)
T ss_pred             HHHHHHHHHhccceecccCccceEEcc-CCceeeeeccccccceeccccccccCCCccccccCCCchhhccccccchHHH
Confidence            999999999999999999999999999 9999999999996331         110                        


Q ss_pred             ------------------CCCCCcccccCCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHH
Q 005958          287 ------------------PNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFL  348 (667)
Q Consensus       287 ------------------~~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~  348 (667)
                                        +.|+|||++. +..|+..+|+||.|||||||+.|++||...           ++.+.....+
T Consensus       817 ~ra~~~h~r~~ahslvgt~nyiapevl~-r~g~~q~cdwws~gvil~em~~g~~pf~~~-----------tp~~tq~kv~  884 (1034)
T KOG0608|consen  817 RRAMRQHQRILAHSLVGTPNYIAPEVLA-RTGYTQLCDWWSVGVILYEMLVGQPPFLAD-----------TPGETQYKVI  884 (1034)
T ss_pred             HHHHhhhhhhhhhhhcCCCcccChHHhc-ccCccccchhhHhhHHHHHHhhCCCCccCC-----------CCCcceeeee
Confidence                              6799999655 556999999999999999999999999522           1111111111


Q ss_pred             HHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC---HHHHHcCCCCCCCCCCC
Q 005958          349 LQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS---CLDALRHPFLCGPRWRV  407 (667)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS---a~elL~HPwf~~~~~~~  407 (667)
                      .       +.....++.-.++|+++.+||.++.. +++.|+.   ++|+..||||++++|..
T Consensus       885 n-------w~~~l~~~~~~~ls~e~~~li~kLc~-sad~RLGkng~d~vKaHpfFkgIDfss  938 (1034)
T KOG0608|consen  885 N-------WRNFLHIPYQGNLSKEALDLIQKLCC-SADSRLGKNGADQVKAHPFFKGIDFSS  938 (1034)
T ss_pred             e-------hhhccccccccccCHHHHHHHHHHhc-ChhhhhcccchhhhhcCccccccchHh
Confidence            0       01112344456789999999998765 6889984   67899999999999754

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=100.00  E-value=7.6e-36  Score=312.53  Aligned_cols=262  Identities=16%  Similarity=0.189  Sum_probs=197.2

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      +...+|.+.+.||+|+||    .||+|.+.......++..+|+|.+....  ..+.+.+|+++++.++      ||||++
T Consensus         2 ~~~~~~~~~~~lg~g~~g----~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~   71 (291)
T cd05094           2 IKRRDIVLKRELGEGAFG----KVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQ------HEHIVK   71 (291)
T ss_pred             CchHHeEEeeeecccCCC----eEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCC------CCCcce
Confidence            345789999999999999    9999987654333467789999987533  2356789999999994      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     ..+..++||| |+++++|.+++..+.....     .+-+        .........++...++.++.||
T Consensus        72 ~~~~~~-----~~~~~~lv~e-~~~~~~L~~~i~~~~~~~~-----~~~~--------~~~~~~~~~~~~~~~~~i~~~i  132 (291)
T cd05094          72 FYGVCG-----DGDPLIMVFE-YMKHGDLNKFLRAHGPDAM-----ILVD--------GQPRQAKGELGLSQMLHIASQI  132 (291)
T ss_pred             EEEEEc-----cCCceEEEEe-cCCCCcHHHHHHhcCcccc-----cccc--------cccccCcCCCCHHHHHHHHHHH
Confidence            999998     7788999999 9999999999987541000     0000        0000011124456788899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhhHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDMRC  309 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksDIWS  309 (667)
                      +.||+|||++||+||||||+|||++. ++.++|+|||++......           ...|+|||.+. ...++.++||||
T Consensus       133 ~~al~~lH~~~i~H~dlkp~Nil~~~-~~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~s  210 (291)
T cd05094         133 ASGMVYLASQHFVHRDLATRNCLVGA-NLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIM-YRKFTTESDVWS  210 (291)
T ss_pred             HHHHHHHHhCCeeecccCcceEEEcc-CCcEEECCCCcccccCCCceeecCCCCCcceeecChHHhc-cCCCCchhhHHH
Confidence            99999999999999999999999998 899999999999754321           24699999554 456899999999


Q ss_pred             HHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCC
Q 005958          310 VGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  388 (667)
Q Consensus       310 LGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kR  388 (667)
                      |||++|||++ |.+||...            ......+.+   .....      .......+.++.+|+.+||+.||++|
T Consensus       211 lG~il~el~t~g~~p~~~~------------~~~~~~~~~---~~~~~------~~~~~~~~~~~~~li~~~l~~~P~~R  269 (291)
T cd05094         211 FGVILWEIFTYGKQPWFQL------------SNTEVIECI---TQGRV------LERPRVCPKEVYDIMLGCWQREPQQR  269 (291)
T ss_pred             HHHHHHHHHhCCCCCCCCC------------CHHHHHHHH---hCCCC------CCCCccCCHHHHHHHHHHcccChhhC
Confidence            9999999998 99998421            111111211   11111      11223457899999999999999999


Q ss_pred             CCHHHHHc
Q 005958          389 ISCLDALR  396 (667)
Q Consensus       389 pSa~elL~  396 (667)
                      ||+.++++
T Consensus       270 pt~~~v~~  277 (291)
T cd05094         270 LNIKEIYK  277 (291)
T ss_pred             cCHHHHHH
Confidence            99999875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=100.00  E-value=7.3e-36  Score=315.19  Aligned_cols=253  Identities=15%  Similarity=0.146  Sum_probs=196.8

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      .+.+..++|++.+.||+|+||    .||+|.+.......++..||+|+++...   ..+.+.+|+.+++++.     +||
T Consensus        29 ~~~~~~~~~~~~~~ig~G~~g----~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~   99 (302)
T cd05055          29 KWEFPRNNLSFGKTLGAGAFG----KVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLG-----NHE   99 (302)
T ss_pred             cccccHHHeEEcceeeccCCe----eEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhcc-----CCC
Confidence            345667899999999999999    9999987432223367789999987532   2345688999999995     599


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++.     ..+..|+||| |+.+|+|.+++.....       ..+++                    ..+..+
T Consensus       100 ~iv~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~i~~~~~-------~~l~~--------------------~~~~~i  146 (302)
T cd05055         100 NIVNLLGACT-----IGGPILVITE-YCCYGDLLNFLRRKRE-------SFLTL--------------------EDLLSF  146 (302)
T ss_pred             CcceEEEEEe-----cCCceEEEEE-cCCCCcHHHHHHhCCC-------CCCCH--------------------HHHHHH
Confidence            9999999998     7788999999 9999999999976320       01333                    567889


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchh
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAF  305 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ks  305 (667)
                      +.||+.||.|||++||+|+||||+|||++. ++.++|+|||++......           ...|+|||.+. ...++.++
T Consensus       147 ~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~  224 (302)
T cd05055         147 SYQVAKGMAFLASKNCIHRDLAARNVLLTH-GKIVKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIF-NCVYTFES  224 (302)
T ss_pred             HHHHHHHHHHHHHCCeehhhhccceEEEcC-CCeEEECCCcccccccCCCceeecCCCCcccccCCHhhhc-cCCCCcHh
Confidence            999999999999999999999999999998 889999999999755332           14699999554 44589999


Q ss_pred             hHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          306 DMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       306 DIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      ||||+||++|||++ |.+||....           ......+.+..   ..      ........++++.+|+.+||.++
T Consensus       225 DiwslGvil~el~t~g~~p~~~~~-----------~~~~~~~~~~~---~~------~~~~~~~~~~~~~~li~~cl~~~  284 (302)
T cd05055         225 DVWSYGILLWEIFSLGSNPYPGMP-----------VDSKFYKLIKE---GY------RMAQPEHAPAEIYDIMKTCWDAD  284 (302)
T ss_pred             HHHHHHHHHHHHHhCCCCCcCCCC-----------chHHHHHHHHc---CC------cCCCCCCCCHHHHHHHHHHcCCC
Confidence            99999999999998 999985321           11111111111   10      01122346789999999999999


Q ss_pred             cCCCCCHHHHHc
Q 005958          385 PSKRISCLDALR  396 (667)
Q Consensus       385 P~kRpSa~elL~  396 (667)
                      |++|||+.|+++
T Consensus       285 p~~Rpt~~ell~  296 (302)
T cd05055         285 PLKRPTFKQIVQ  296 (302)
T ss_pred             chhCcCHHHHHH
Confidence            999999999985

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=100.00  E-value=5.3e-36  Score=308.76  Aligned_cols=251  Identities=15%  Similarity=0.159  Sum_probs=190.9

Q ss_pred             eEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           88 FKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        88 y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      |++.+.||+|+||    .||+|.+....  .++..||+|.++...    ....+.+|+++++.+      +||||+++++
T Consensus         1 ~~~~~~lg~G~~g----~v~~~~~~~~~--~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~   68 (273)
T cd05035           1 LKLGKILGEGEFG----SVMEGQLSQDD--GSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDF------DHPNVMKLIG   68 (273)
T ss_pred             CccccccCcCCCc----eEEEEEEecCC--CCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhC------CCCCeeeEEe
Confidence            6788999999999    99999986521  145889999987532    234568899999998      4999999999


Q ss_pred             EEEeccc-CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          164 YVSSHTT-SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       164 ~~~~~~~-~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      ++..... ......+++|| |+.+|+|..++.......                       ....++...+..++.|++.
T Consensus        69 ~~~~~~~~~~~~~~~~v~e-~~~~~~l~~~l~~~~~~~-----------------------~~~~~~~~~~~~~~~~i~~  124 (273)
T cd05035          69 VCFEASSLQKIPKPMVILP-FMKHGDLHSFLLYSRLGG-----------------------LPEKLPLQTLLKFMVDIAL  124 (273)
T ss_pred             eeccCCccccCcccEEEEe-ccCCCCHHHHHHHhhccC-----------------------CcccCCHHHHHHHHHHHHH
Confidence            8863211 12345899999 999999999986532100                       0112334567889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhhHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      ||.|||++||+||||||+||++++ ++.+||+|||+++.....           ...|+|||.+ ....++.++||||||
T Consensus       125 aL~~lH~~~i~H~dlkp~Nil~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~-~~~~~~~~~Dv~SlG  202 (273)
T cd05035         125 GMEYLSNRNFIHRDLAARNCMLRE-DMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESL-ADRVYTSKSDVWAFG  202 (273)
T ss_pred             HHHHHHhCCeeccccchheEEECC-CCeEEECCccceeeccccccccccccccCCccccCHhhc-ccCCCCcccchHHHH
Confidence            999999999999999999999998 889999999999865432           1469999954 556689999999999


Q ss_pred             HHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          312 FMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       312 viLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      |++|||++ |.+||.+.            ....+.+.+.   ...      .......+++++.++|.+||+.||++|||
T Consensus       203 ~il~el~~~g~~p~~~~------------~~~~~~~~~~---~~~------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~  261 (273)
T cd05035         203 VTMWEIATRGQTPYPGV------------ENHEIYDYLR---HGN------RLKQPEDCLDELYDLMYSCWRADPKDRPT  261 (273)
T ss_pred             HHHHHHHhCCCCCCCCC------------CHHHHHHHHH---cCC------CCCCCcCCCHHHHHHHHHHcCCChhhCcC
Confidence            99999999 88888532            2222222221   111      11233467889999999999999999999


Q ss_pred             HHHHHcC
Q 005958          391 CLDALRH  397 (667)
Q Consensus       391 a~elL~H  397 (667)
                      +.|++++
T Consensus       262 ~~e~~~~  268 (273)
T cd05035         262 FTKLREV  268 (273)
T ss_pred             HHHHHHH
Confidence            9999864

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=100.00  E-value=5.3e-36  Score=322.22  Aligned_cols=281  Identities=15%  Similarity=0.139  Sum_probs=201.1

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      +.+..++|++.+.||+|+||    +||+|.+.......+++.||||+++...   ....+.+|+.+|.++.     +|||
T Consensus         2 ~~~~~~~~~~~~~lG~G~fg----~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~n   72 (343)
T cd05103           2 WEFPRDRLKLGKPLGRGAFG----QVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIG-----HHLN   72 (343)
T ss_pred             cccchhHhcccccccCCccc----eEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhcc-----CCcc
Confidence            34566899999999999999    9999997543333478899999997532   2345688999999996     5999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCccc-cc-----------ccCCCHHHHhhcCC-------
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTL-EA-----------TLALDEESVRKVGD-------  218 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l-~~-----------~~~l~E~~a~~~~~-------  218 (667)
                      |+++++++..    .+..+++||| |+++|+|.+++......... ..           ...+.+....+...       
T Consensus        73 iv~~~~~~~~----~~~~~~lv~e-y~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (343)
T cd05103          73 VVNLLGACTK----PGGPLMVIVE-FCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSS  147 (343)
T ss_pred             Hhhhcceeec----CCCceEEEEe-ccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhcccccccccc
Confidence            9999998862    3457899999 99999999999764210000 00           00111111100000       


Q ss_pred             -------------------CCCCCCCccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeeccc
Q 005958          219 -------------------DSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNA  279 (667)
Q Consensus       219 -------------------~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA  279 (667)
                                         .........++...+..++.||+.||+|||++||+||||||+|||++. ++.+||+|||++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~~~-~~~~kl~dfg~~  226 (343)
T cd05103         148 ASSGFVEEKSLSDVEEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLASRKCIHRDLAARNILLSE-NNVVKICDFGLA  226 (343)
T ss_pred             ccccccCCCccccchhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCccCeEEEcC-CCcEEEEecccc
Confidence                               000001123567788999999999999999999999999999999998 899999999999


Q ss_pred             ccccCC-----------CCCCCCcccccCCCCCCchhhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHH
Q 005958          280 ADFYED-----------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREF  347 (667)
Q Consensus       280 ~~~~~~-----------~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~  347 (667)
                      ......           ...|+|||.+. ...++.++|||||||++|+|++ |..||+...           ........
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~-----------~~~~~~~~  294 (343)
T cd05103         227 RDIYKDPDYVRKGDARLPLKWMAPETIF-DRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK-----------IDEEFCRR  294 (343)
T ss_pred             cccccCcchhhcCCCCCCcceECcHHhc-CCCCCchhhHHHHHHHHHHHHHCCCCCCCCcc-----------ccHHHHHH
Confidence            764321           14599999654 4568999999999999999997 999885321           01111111


Q ss_pred             HHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcC
Q 005958          348 LLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRH  397 (667)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~H  397 (667)
                      +..   ..      ........++++.+++.+||+.||++|||+.++++|
T Consensus       295 ~~~---~~------~~~~~~~~~~~~~~~~~~cl~~~p~~Rps~~eil~~  335 (343)
T cd05103         295 LKE---GT------RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  335 (343)
T ss_pred             Hhc---cC------CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            111   10      011223457899999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=100.00  E-value=8.1e-36  Score=307.51  Aligned_cols=244  Identities=14%  Similarity=0.130  Sum_probs=193.5

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      .++|++.+.||+|+||    .||+|.+...+  .+...||||.++...   ....+.+|+.+++.++      ||||+++
T Consensus         3 ~~~~~~~~~lg~g~~g----~vy~~~~~~~~--~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~~   70 (266)
T cd05033           3 PSYVTIEKVIGGGEFG----EVCRGRLKLPG--KKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFD------HPNIIRL   70 (266)
T ss_pred             hHHceeeeEecCCccc----eEEEEEEccCC--CCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCC------CCCcceE
Confidence            4689999999999999    99999987521  135689999987532   2345688999999994      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     ..+..++||| |+++|+|.+++....        ..+++                    ..+..++.|++
T Consensus        71 ~~~~~-----~~~~~~iv~e-~~~~~~L~~~~~~~~--------~~~~~--------------------~~~~~~~~~l~  116 (266)
T cd05033          71 EGVVT-----KSRPVMIITE-YMENGSLDKFLREND--------GKFTV--------------------GQLVGMLRGIA  116 (266)
T ss_pred             eEEEe-----cCCceEEEEE-cCCCCCHHHHHHhcc--------CCCCH--------------------HHHHHHHHHHH
Confidence            99998     7788999999 999999999997643        13443                    45778999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhhHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      .||.|||++||+|+||||+|||++. ++.++|+|||++......           ...|+|||.+ ....++.++|||||
T Consensus       117 ~~l~~Lh~~~i~H~di~p~nili~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~-~~~~~~~~~Dv~sl  194 (266)
T cd05033         117 SGMKYLSEMNYVHRDLAARNILVNS-NLVCKVSDFGLSRRLEDSEATYTTKGGKIPIRWTAPEAI-AYRKFTSASDVWSF  194 (266)
T ss_pred             HHHHHHHhCCcccCCCCcceEEEcC-CCCEEECccchhhcccccccceeccCCCCCccccChhhh-ccCCCccccchHHH
Confidence            9999999999999999999999998 899999999999876411           1469999954 45568999999999


Q ss_pred             HHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          311 GFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       311 GviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      ||++|+|++ |..||...            ........+....         ..+.....++++.+|+.+||+.||++||
T Consensus       195 G~~l~~l~~~g~~p~~~~------------~~~~~~~~~~~~~---------~~~~~~~~~~~l~~li~~cl~~~p~~Rp  253 (266)
T cd05033         195 GIVMWEVMSYGERPYWDM------------SNQDVIKAVEDGY---------RLPPPMDCPSALYQLMLDCWQKDRNERP  253 (266)
T ss_pred             HHHHHHHHccCCCCCCCC------------CHHHHHHHHHcCC---------CCCCCCCCCHHHHHHHHHHcCCCcccCc
Confidence            999999998 99888421            1222222221110         1112345678999999999999999999


Q ss_pred             CHHHHHcC
Q 005958          390 SCLDALRH  397 (667)
Q Consensus       390 Sa~elL~H  397 (667)
                      ++.+++++
T Consensus       254 ~~~ei~~~  261 (266)
T cd05033         254 TFSQIVST  261 (266)
T ss_pred             CHHHHHHH
Confidence            99999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=100.00  E-value=8.9e-36  Score=311.65  Aligned_cols=266  Identities=18%  Similarity=0.192  Sum_probs=197.4

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      +|++.+.||+|+||    .||+|.+...........+|+|.+....   ....+.+|+.+++.+.      ||||+++++
T Consensus         1 ~~~~~~~lg~g~~g----~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~------h~~iv~~~~   70 (290)
T cd05045           1 NLVLGKTLGEGEFG----KVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVN------HPHVIKLYG   70 (290)
T ss_pred             CccccccccCcCCc----ceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCC------CCCEeeEEE
Confidence            58899999999999    9999998653333345679999887532   2345788999999994      999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      .+.     ..+..+++|| |+.+|+|.+++........-   ..-.+....  ...........++...+..++.|++.|
T Consensus        71 ~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~l~~~~~~~i~~~i~~~  139 (290)
T cd05045          71 ACS-----QDGPLLLIVE-YAKYGSLRSFLRESRKVGPS---YLGSDGNRN--SSYLDNPDERALTMGDLISFAWQISRG  139 (290)
T ss_pred             EEe-----cCCCcEEEEE-ecCCCCHHHHHHhcCCcccc---ccccccccc--cccccCccccccCHHHHHHHHHHHHHH
Confidence            998     7788999999 99999999999764311100   000000000  000000112245567889999999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhhHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      |.|||++||+||||||+|||++. ++.+||+|||++......           ...|+|||.+. ...++.++|||||||
T Consensus       140 l~~LH~~~ivH~dikp~nill~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~-~~~~~~~~Di~slG~  217 (290)
T cd05045         140 MQYLAEMKLVHRDLAARNVLVAE-GRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLF-DHIYTTQSDVWSFGV  217 (290)
T ss_pred             HHHHHHCCeehhhhhhheEEEcC-CCcEEeccccccccccCccchhcccCCCCCccccCHHHHc-cCCcchHhHHHHHHH
Confidence            99999999999999999999998 889999999999754221           24699999654 455899999999999


Q ss_pred             HHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH
Q 005958          313 MMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC  391 (667)
Q Consensus       313 iLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa  391 (667)
                      ++|||++ |.+||+            +..+..+.+......         ........+.++++|+.+||+.||++||++
T Consensus       218 ~l~el~t~g~~p~~------------~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~i~~cl~~~P~~Rp~~  276 (290)
T cd05045         218 LLWEIVTLGGNPYP------------GIAPERLFNLLKTGY---------RMERPENCSEEMYNLMLTCWKQEPDKRPTF  276 (290)
T ss_pred             HHHHHHhcCCCCCC------------CCCHHHHHHHHhCCC---------CCCCCCCCCHHHHHHHHHHccCCcccCCCH
Confidence            9999998 999985            233334334332211         112234577899999999999999999999


Q ss_pred             HHHHc
Q 005958          392 LDALR  396 (667)
Q Consensus       392 ~elL~  396 (667)
                      .++++
T Consensus       277 ~~i~~  281 (290)
T cd05045         277 ADISK  281 (290)
T ss_pred             HHHHH
Confidence            99875

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=100.00  E-value=1.7e-35  Score=299.23  Aligned_cols=243  Identities=21%  Similarity=0.301  Sum_probs=197.0

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--hHHHHHHHHHHHHHHhhccCCCCCcceEEEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGY  164 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~  164 (667)
                      +|++.+.||+|++|    .||+|.+..     +++.|++|++....  ....+.+|+++++.+.      |+||+++++.
T Consensus         1 ~y~~~~~l~~g~~~----~v~~~~~~~-----~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~------~~~i~~~~~~   65 (253)
T cd05122           1 LFEILEKIGKGGFG----EVYKARHKR-----TGKEVAIKVIKLESKEKKEKIINEIQILKKCK------HPNIVKYYGS   65 (253)
T ss_pred             CceeeeeeccCCce----EEEEEEECC-----CCcEEEEEEecccchhHHHHHHHHHHHHHhCC------CCCEeEEEEE
Confidence            58899999999999    999999987     78999999997654  4567789999999994      9999999999


Q ss_pred             EEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHH
Q 005958          165 VSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGV  244 (667)
Q Consensus       165 ~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL  244 (667)
                      +.     .....++++| |+++++|.+++....        ..+++                    ..+..++.|++.||
T Consensus        66 ~~-----~~~~~~l~~e-~~~~~~L~~~~~~~~--------~~~~~--------------------~~~~~i~~~i~~~l  111 (253)
T cd05122          66 YL-----KKDELWIVME-FCSGGSLKDLLKSTN--------QTLTE--------------------SQIAYVCKELLKGL  111 (253)
T ss_pred             Ee-----cCCeEEEEEe-cCCCCcHHHHHhhcC--------CCCCH--------------------HHHHHHHHHHHHHH
Confidence            98     6788999999 999889999987642        13443                    45788999999999


Q ss_pred             HHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHHHHHHHH
Q 005958          245 NYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAK  316 (667)
Q Consensus       245 ~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSLGviLye  316 (667)
                      .|||++|++|+||+|+||+++. ++.++|+|||.+......        ...|+|||.+. ...++.++||||||+++|+
T Consensus       112 ~~lh~~~i~h~dl~p~ni~i~~-~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~PE~~~-~~~~~~~~Dv~slG~il~~  189 (253)
T cd05122         112 EYLHSNGIIHRDIKAANILLTS-DGEVKLIDFGLSAQLSDTKARNTMVGTPYWMAPEVIN-GKPYDYKADIWSLGITAIE  189 (253)
T ss_pred             HHhhcCCEecCCCCHHHEEEcc-CCeEEEeeccccccccccccccceecCCcccCHHHHc-CCCCCccccHHHHHHHHHH
Confidence            9999999999999999999998 899999999999876553        26799999654 4448899999999999999


Q ss_pred             HHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHc
Q 005958          317 MVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALR  396 (667)
Q Consensus       317 mltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~  396 (667)
                      |++|++||....            ..........   ...+    .......++.++.++|.+||+.||++|||+.|+|+
T Consensus       190 l~~g~~p~~~~~------------~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~~~l~  250 (253)
T cd05122         190 LAEGKPPYSELP------------PMKALFKIAT---NGPP----GLRNPEKWSDEFKDFLKKCLQKNPEKRPTAEQLLK  250 (253)
T ss_pred             HHhCCCCCCCCc------------hHHHHHHHHh---cCCC----CcCcccccCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            999999985221            1111111111   1000    11112224789999999999999999999999999


Q ss_pred             CCC
Q 005958          397 HPF  399 (667)
Q Consensus       397 HPw  399 (667)
                      |||
T Consensus       251 ~~~  253 (253)
T cd05122         251 HPF  253 (253)
T ss_pred             CCC
Confidence            998

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=100.00  E-value=1.8e-35  Score=300.25  Aligned_cols=243  Identities=22%  Similarity=0.286  Sum_probs=198.0

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      +|.+.+.||+|++|    .||+|.+..     +++.|++|++....    ..+.+.+|+++++++.      ||||++++
T Consensus         1 ~~~~~~~i~~g~~~----~v~~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~------~~~i~~~~   65 (260)
T cd06606           1 EWTRGELLGRGSFG----SVYLALDKD-----TGELMAVKSVELSGDSEEELEALEREIRILSSLQ------HPNIVRYY   65 (260)
T ss_pred             CceeeeEeeecCce----EEEEEEECC-----CCcEEEEEEeeccccchHHHHHHHHHHHHHHHcC------CCCEeeEE
Confidence            58899999999999    999999997     78999999987643    3456789999999994      99999999


Q ss_pred             EEEEecccCCC--CeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGR--SLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       163 ~~~~~~~~~~~--~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +.+.     ..  ...++||| |+++++|.+++....         .+++                    ..+..++.|+
T Consensus        66 ~~~~-----~~~~~~~~lv~e-~~~~~~L~~~~~~~~---------~~~~--------------------~~~~~~~~~l  110 (260)
T cd06606          66 GSER-----DEEKNTLNIFLE-YVSGGSLSSLLKKFG---------KLPE--------------------PVIRKYTRQI  110 (260)
T ss_pred             EEEe-----cCCCCeEEEEEE-ecCCCcHHHHHHHcC---------CCCH--------------------HHHHHHHHHH
Confidence            9998     55  88999999 998889999998753         3444                    4567899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-----------CCCCCcccccCCCCCCchhhHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-----------PNNSSPDSNMDRRQMMIAFDMRC  309 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-----------~~Y~APE~l~~~~~ys~ksDIWS  309 (667)
                      +.||.|||+.|++|+||+|+||+++. ++.++|+|||.+.......           ..|+|||.+ ....++.++||||
T Consensus       111 ~~~l~~lh~~~~~h~dl~p~ni~i~~-~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~-~~~~~~~~~Dv~s  188 (260)
T cd06606         111 LEGLAYLHSNGIVHRDIKGANILVDS-DGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVI-RGEEYGRAADIWS  188 (260)
T ss_pred             HHHHHHHHHCCccccCCCHHHEEEcC-CCCEEEcccccEEecccccccccccCCCCCccccCHhhh-cCCCCCchhhHHH
Confidence            99999999999999999999999998 8999999999987665432           569999954 4444899999999


Q ss_pred             HHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          310 VGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       310 LGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      ||+++|+|++|..||....           ..   .........     ...........+.++.+||.+||+.||++||
T Consensus       189 lG~il~~l~~g~~p~~~~~-----------~~---~~~~~~~~~-----~~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp  249 (260)
T cd06606         189 LGCTVIEMATGKPPWSELG-----------NP---MAALYKIGS-----SGEPPEIPEHLSEEAKDFLRKCLRRDPKKRP  249 (260)
T ss_pred             HHHHHHHHHhCCCCCCCCC-----------ch---HHHHHhccc-----cCCCcCCCcccCHHHHHHHHHhCcCChhhCC
Confidence            9999999999999985322           00   011111110     0011223345578999999999999999999


Q ss_pred             CHHHHHcCCCC
Q 005958          390 SCLDALRHPFL  400 (667)
Q Consensus       390 Sa~elL~HPwf  400 (667)
                      ++.++++||||
T Consensus       250 ~~~~ll~~~~~  260 (260)
T cd06606         250 TADELLQHPFL  260 (260)
T ss_pred             CHHHHhhCCCC
Confidence            99999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=7.5e-36  Score=310.85  Aligned_cols=255  Identities=20%  Similarity=0.199  Sum_probs=191.4

Q ss_pred             CCe-EEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           86 GDF-KILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        86 ~~y-~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ++| ++.+.||+|+||    +||++..... ...+++.||+|.+....   ....+.+|+++|++++      ||||+++
T Consensus         3 ~~~~~~~~~lg~g~~g----~v~~~~~~~~-~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~------h~~i~~~   71 (283)
T cd05080           3 KRYLKKIRVLGEGHFG----KVSLYCYDPA-NDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLY------HENIVKY   71 (283)
T ss_pred             hhhceeceecccCCCc----EEEEeeEccc-cCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCC------CCCEeeE
Confidence            455 999999999999    9988764321 12268899999987532   3355688999999994      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++...   ....+++||| |+++|+|.+++...          .+++                    ..++.++.|++
T Consensus        72 ~~~~~~~---~~~~~~lv~e-~~~~~~l~~~~~~~----------~l~~--------------------~~~~~i~~~l~  117 (283)
T cd05080          72 KGCCSEQ---GGKGLQLIME-YVPLGSLRDYLPKH----------KLNL--------------------AQLLLFAQQIC  117 (283)
T ss_pred             EEEEecC---CCceEEEEec-CCCCCCHHHHHHHc----------CCCH--------------------HHHHHHHHHHH
Confidence            9988633   4567899999 99999999999763          3444                    45788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC------------CCCCCCcccccCCCCCCchhhHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED------------GPNNSSPDSNMDRRQMMIAFDMRC  309 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------------~~~Y~APE~l~~~~~ys~ksDIWS  309 (667)
                      .||.|||++||+||||||+|||++. ++.+||+|||++......            ...|+|||.+. ...++.++||||
T Consensus       118 ~~l~~lH~~~i~H~dlkp~Nili~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~-~~~~~~~~Di~s  195 (283)
T cd05080         118 EGMAYLHSQHYIHRDLAARNVLLDN-DRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAVECLK-ENKFSYASDVWS  195 (283)
T ss_pred             HHHHHHHHCCeeccccChheEEEcC-CCcEEEeecccccccCCcchhhccCCCCCCCceeeCHhHhc-ccCCCcccccHH
Confidence            9999999999999999999999998 899999999999765432            14589999554 456899999999


Q ss_pred             HHHHHHHHHhCCCCChhhhhhhhhhhc--cCC-ChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          310 VGFMMAKMVLRELMDPLIFTKFKSFLT--KGI-DPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       310 LGviLyemltG~~PF~~~~~~~~~~~~--~g~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      |||++|||++|..||......+.....  .+. ....+.+....         ....+.....+.++.+|+.+||+.||+
T Consensus       196 lG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~li~~cl~~~p~  266 (283)
T cd05080         196 FGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLIELLER---------GMRLPCPKNCPQEVYILMKNCWETEAK  266 (283)
T ss_pred             HHHHHHHHHhCCCCCCCCcchhhhhhcccccccchhhhhhhhhc---------CCCCCCCCCCCHHHHHHHHHHhccChh
Confidence            999999999999998633221111100  000 00111111100         011122345678999999999999999


Q ss_pred             CCCCHHHHHc
Q 005958          387 KRISCLDALR  396 (667)
Q Consensus       387 kRpSa~elL~  396 (667)
                      +|||++++++
T Consensus       267 ~Rps~~~i~~  276 (283)
T cd05080         267 FRPTFRSLIP  276 (283)
T ss_pred             hCCCHHHHHH
Confidence            9999999985

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=5.7e-36  Score=310.82  Aligned_cols=264  Identities=20%  Similarity=0.263  Sum_probs=199.0

Q ss_pred             eEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEEEEE
Q 005958           88 FKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGY  164 (667)
Q Consensus        88 y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~  164 (667)
                      |++.+.||.|+||    +||+|....     +++.||||.+....   ......+|+..+++++     +||||++++++
T Consensus         1 y~~~~~ig~g~~g----~v~~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~-----~h~~i~~~~~~   66 (283)
T cd07830           1 YKVIKQLGDGTFG----SVYLARNKE-----TGELVAIKKMKKKFYSWEECMNLREVKSLRKLN-----EHPNIVKLKEV   66 (283)
T ss_pred             CeeheeeccCCce----EEEEEEECC-----CCcEEEEEEehhhccchhHHHHHHHHHHHHhcc-----CCCCchhHHHH
Confidence            7889999999999    999999987     78999999986532   1223467888888885     59999999999


Q ss_pred             EEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHH
Q 005958          165 VSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGV  244 (667)
Q Consensus       165 ~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL  244 (667)
                      +.     .++..++||| |+ +|+|.+++....       ...+++                    ..+..++.|++.||
T Consensus        67 ~~-----~~~~~~lv~e-~~-~~~l~~~~~~~~-------~~~~~~--------------------~~~~~~~~~l~~~l  112 (283)
T cd07830          67 FR-----ENDELYFVFE-YM-EGNLYQLMKDRK-------GKPFSE--------------------SVIRSIIYQILQGL  112 (283)
T ss_pred             hh-----cCCcEEEEEe-cC-CCCHHHHHHhcc-------cccCCH--------------------HHHHHHHHHHHHHH
Confidence            98     7789999999 88 559999987642       013343                    56788999999999


Q ss_pred             HHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHHHHHHHH
Q 005958          245 NYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAK  316 (667)
Q Consensus       245 ~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSLGviLye  316 (667)
                      .|||++||+|+||+|+||+++. ++.++|+|||.+......        ...|+|||.+.....++.++|+||||+++||
T Consensus       113 ~~Lh~~~i~H~dl~~~ni~i~~-~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~e  191 (283)
T cd07830         113 AHIHKHGFFHRDLKPENLLVSG-PEVVKIADFGLAREIRSRPPYTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAE  191 (283)
T ss_pred             HHHHHCCcccCCCChhhEEEcC-CCCEEEeecccceeccCCCCcCCCCCcccccCceeeecCcCcCCccchhhHHHHHHH
Confidence            9999999999999999999998 899999999999766442        2569999977666778999999999999999


Q ss_pred             HHhCCCCChhh---hhhhhhhhccCCChhH-HHHHHH--HHhccCCCCC-CC-CcccccCCCHHHHHHHHHhhhcCcCCC
Q 005958          317 MVLRELMDPLI---FTKFKSFLTKGIDPSC-LREFLL--QVLNRNSSSG-NT-GFQILDRNWGAGWNLLSLLLATKPSKR  388 (667)
Q Consensus       317 mltG~~PF~~~---~~~~~~~~~~g~~~~~-l~~~~~--~~~~~~~~~~-~~-~~~~~~~~s~e~~dLI~~~L~~DP~kR  388 (667)
                      |++|++||+..   ....+.....+.+... +.+...  .......+.. .. .....+..++++++||.+||+.||++|
T Consensus       192 l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~R  271 (283)
T cd07830         192 LYTLRPLFPGSSEIDQLYKICSVLGTPTKQDWPEGYKLASKLGFRFPQFAPTSLHQLIPNASPEAIDLIKDMLRWDPKKR  271 (283)
T ss_pred             HHhCCCccCCCChHHHHHHHHHhcCCCChhhhhhHhhhhccccccccccccccHHHHcccCCHHHHHHHHHhcccCcccC
Confidence            99999999732   2222222233333221 111110  0000000000 00 011223447899999999999999999


Q ss_pred             CCHHHHHcCCCC
Q 005958          389 ISCLDALRHPFL  400 (667)
Q Consensus       389 pSa~elL~HPwf  400 (667)
                      ||++|++.||||
T Consensus       272 pt~~ei~~~~~~  283 (283)
T cd07830         272 PTASQALQHPYF  283 (283)
T ss_pred             CCHHHHhhCCCC
Confidence            999999999997

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.3e-35  Score=303.87  Aligned_cols=241  Identities=17%  Similarity=0.176  Sum_probs=194.6

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-HHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-QRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      +..++|++.+.||.|+||    .||+|...       ++.||+|.+..... .+.+.+|+.+++.++      |+||+++
T Consensus         3 ~~~~~~~~~~~ig~g~~g----~v~~~~~~-------~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~------~~~i~~~   65 (256)
T cd05039           3 INSKELKLGATIGKGEFG----DVMLGDYR-------GQKVAVKCLKDDSTAAQAFLAEASVMTTLR------HPNLVQL   65 (256)
T ss_pred             cChhhccceeeeecCCCc----eEEEEEec-------CcEEEEEEeccchhHHHHHHHHHHHHHhcC------Ccceeee
Confidence            456789999999999999    99999865       58899999986543 456789999999994      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     ..+..++||| |+++++|.+++.....       ..++                    ...++.++.|++
T Consensus        66 ~~~~~-----~~~~~~~v~e-~~~~~~L~~~~~~~~~-------~~~~--------------------~~~~~~~~~qi~  112 (256)
T cd05039          66 LGVVL-----QGNPLYIVTE-YMAKGSLVDYLRSRGR-------AVIT--------------------LAQQLGFALDVC  112 (256)
T ss_pred             EEEEc-----CCCCeEEEEE-ecCCCcHHHHHHhcCC-------CCCC--------------------HHHHHHHHHHHH
Confidence            99998     6788999999 9999999999976431       1233                    356788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC------CCCCCCcccccCCCCCCchhhHHHHHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMA  315 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------~~~Y~APE~l~~~~~ys~ksDIWSLGviLy  315 (667)
                      .||.|||++||+|+||||+||+++. ++.+||+|||.+......      ...|+|||.+. ...++.++|||||||++|
T Consensus       113 ~~l~~lh~~~i~H~di~p~Nili~~-~~~~~l~d~g~~~~~~~~~~~~~~~~~~~ape~~~-~~~~~~~~Di~slG~il~  190 (256)
T cd05039         113 EGMEYLEEKNFVHRDLAARNVLVSE-DLVAKVSDFGLAKEASQGQDSGKLPVKWTAPEALR-EKKFSTKSDVWSFGILLW  190 (256)
T ss_pred             HHHHHHHhCCccchhcccceEEEeC-CCCEEEcccccccccccccccCCCcccccCchhhc-CCcCCcHHHHHHHHHHHH
Confidence            9999999999999999999999998 899999999999866432      24599999654 456889999999999999


Q ss_pred             HHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHH
Q 005958          316 KMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDA  394 (667)
Q Consensus       316 emlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~el  394 (667)
                      ||++ |..||..            .+...+.+.+..   ..      ........++++.+||.+||..+|++|||+.++
T Consensus       191 ~l~~~g~~p~~~------------~~~~~~~~~~~~---~~------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l  249 (256)
T cd05039         191 EIYSFGRVPYPR------------IPLKDVVPHVEK---GY------RMEAPEGCPPEVYKVMKDCWELDPAKRPTFKQL  249 (256)
T ss_pred             HHHhcCCCCCCC------------CCHHHHHHHHhc---CC------CCCCccCCCHHHHHHHHHHhccChhhCcCHHHH
Confidence            9997 9999842            222222222211   10      111234567899999999999999999999999


Q ss_pred             Hc
Q 005958          395 LR  396 (667)
Q Consensus       395 L~  396 (667)
                      ++
T Consensus       250 ~~  251 (256)
T cd05039         250 RE  251 (256)
T ss_pred             HH
Confidence            85

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=100.00  E-value=1.1e-35  Score=309.08  Aligned_cols=245  Identities=14%  Similarity=0.110  Sum_probs=190.2

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      +..++|++.+.||.|+||    +||+|++...+.. ....||+|++...   .....+.+|+.+++.+      .||||+
T Consensus         4 l~~~~~~~~~~lg~G~~g----~vy~~~~~~~~~~-~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~------~~~~i~   72 (279)
T cd05109           4 LKETELKKVKVLGSGAFG----TVYKGIWIPDGEN-VKIPVAIKVLRENTSPKANKEILDEAYVMAGV------GSPYVC   72 (279)
T ss_pred             cchhheeeeeecCCCCCc----eEEEEEEecCCCc-cceEEEEEEecCCCCHHHHHHHHHHHHHHHhc------CCCCCc
Confidence            445789999999999999    9999998762111 1235899998642   2335568899999988      499999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++.     . ...+++|| |+++|+|.+++....        ..+++                    ..+..++.|
T Consensus        73 ~~~~~~~-----~-~~~~l~~~-~~~~g~l~~~l~~~~--------~~~~~--------------------~~~~~~~~q  117 (279)
T cd05109          73 RLLGICL-----T-STVQLVTQ-LMPYGCLLDYVRENK--------DRIGS--------------------QDLLNWCVQ  117 (279)
T ss_pred             eEEEEEc-----C-CCcEEEEE-cCCCCCHHHHHhhcc--------CCCCH--------------------HHHHHHHHH
Confidence            9999986     3 35789999 999999999997642        13444                    456779999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhhHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      |+.||+|||++||+||||||+|||++. ++.+||+|||+++.....           ...|+|||.+. ...++.++|||
T Consensus       118 i~~~L~~lH~~~iiH~dlkp~Nil~~~-~~~~kL~dfG~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~-~~~~~~~~Di~  195 (279)
T cd05109         118 IAKGMSYLEEVRLVHRDLAARNVLVKS-PNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESIL-HRRFTHQSDVW  195 (279)
T ss_pred             HHHHHHHHHHCCeeccccccceEEEcC-CCcEEECCCCceeecccccceeecCCCccchhhCCHHHhc-cCCCCchhHHH
Confidence            999999999999999999999999988 889999999999765321           24699999654 45689999999


Q ss_pred             HHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          309 CVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       309 SLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      ||||++|||++ |.+||..            .....+...+...         ...+.....+.++.++|.+||+.||++
T Consensus       196 slG~~l~el~t~g~~p~~~------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~li~~~l~~dp~~  254 (279)
T cd05109         196 SYGVTVWELMTFGAKPYDG------------IPAREIPDLLEKG---------ERLPQPPICTIDVYMIMVKCWMIDSEC  254 (279)
T ss_pred             HHHHHHHHHHcCCCCCCCC------------CCHHHHHHHHHCC---------CcCCCCccCCHHHHHHHHHHcCCChhh
Confidence            99999999998 8888842            1222222222211         011223456789999999999999999


Q ss_pred             CCCHHHHHc
Q 005958          388 RISCLDALR  396 (667)
Q Consensus       388 RpSa~elL~  396 (667)
                      ||++.+++.
T Consensus       255 Rp~~~~l~~  263 (279)
T cd05109         255 RPRFRELVD  263 (279)
T ss_pred             CcCHHHHHH
Confidence            999999985

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=100.00  E-value=9.9e-36  Score=307.24  Aligned_cols=250  Identities=16%  Similarity=0.180  Sum_probs=187.6

Q ss_pred             eEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           88 FKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        88 y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      |.+.+.||+|+||    .||+|.+...+   ....||+|.++..    ...+.+.+|+.+++.++      ||||+++++
T Consensus         1 ~~i~~~ig~G~~g----~V~~~~~~~~~---~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~------h~~iv~~~~   67 (272)
T cd05075           1 LALGKTLGEGEFG----SVMEGQLNQDD---SILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFD------HPNVMRLIG   67 (272)
T ss_pred             CccccccCcccCc----eEEEeEEccCC---CeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCC------CCCcceEEE
Confidence            3567899999999    99999987621   1236999988642    23455688999999994      999999999


Q ss_pred             EEEeccc-CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          164 YVSSHTT-SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       164 ~~~~~~~-~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      ++..... ......+++|| |+.+|+|.+++.......   ....++                    ...+..++.||+.
T Consensus        68 ~~~~~~~~~~~~~~~~v~e-~~~~~~l~~~~~~~~~~~---~~~~~~--------------------~~~~~~~~~~i~~  123 (272)
T cd05075          68 VCLQTVESEGYPSPVVILP-FMKHGDLHSFLLYSRLGD---CPQYLP--------------------TQMLVKFMTDIAS  123 (272)
T ss_pred             EEccCCcccCCCCcEEEEE-eCCCCcHHHHHHHhcccC---CcccCC--------------------HHHHHHHHHHHHH
Confidence            8752211 12346799999 999999999986432100   001233                    3567889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhhHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      ||+|||++||+||||||+|||++. ++.+||+|||+++.....           .+.|+|||.+ ....++.++||||||
T Consensus       124 ~l~~lH~~~i~H~dlkp~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~-~~~~~~~~~Di~slG  201 (272)
T cd05075         124 GMEYLSSKSFIHRDLAARNCMLNE-NMNVCVADFGLSKKIYNGDYYRQGRIAKMPVKWIAIESL-ADRVYTTKSDVWSFG  201 (272)
T ss_pred             HHHHHHHCCeeccccchhheEEcC-CCCEEECCCCcccccCcccceecCCcccCCcccCCHHHc-cCCCcChHHHHHHHH
Confidence            999999999999999999999998 899999999999865332           2469999954 455689999999999


Q ss_pred             HHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          312 FMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       312 viLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      |++|||++ |++||+.            .......+.+..   ..      .......++..+.++|.+||+.||++|||
T Consensus       202 ~il~el~~~g~~p~~~------------~~~~~~~~~~~~---~~------~~~~~~~~~~~~~~li~~~l~~~p~~Rps  260 (272)
T cd05075         202 VTMWEIATRGQTPYPG------------VENSEIYDYLRQ---GN------RLKQPPDCLDGLYSLMSSCWLLNPKDRPS  260 (272)
T ss_pred             HHHHHHHcCCCCCCCC------------CCHHHHHHHHHc---CC------CCCCCCCCCHHHHHHHHHHcCCCcccCcC
Confidence            99999999 8899852            222222222221   11      11223456789999999999999999999


Q ss_pred             HHHHHcC
Q 005958          391 CLDALRH  397 (667)
Q Consensus       391 a~elL~H  397 (667)
                      +.+++++
T Consensus       261 ~~~l~~~  267 (272)
T cd05075         261 FETLRCE  267 (272)
T ss_pred             HHHHHHH
Confidence            9999864

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=100.00  E-value=1.2e-35  Score=310.78  Aligned_cols=264  Identities=13%  Similarity=0.120  Sum_probs=195.5

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCC-----------CCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHh
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNS-----------PLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLV  148 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~-----------~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~  148 (667)
                      +..++|++.+.||+|+||    .||+|.+...+.           ...+..||+|.+....   ..+.+.+|++++++++
T Consensus         2 ~~~~~~~~~~~lg~G~~g----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~   77 (296)
T cd05051           2 FPRQPLNFVEKLGEGQFG----EVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLS   77 (296)
T ss_pred             CchhhCcccccccCCCCc----cEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcC
Confidence            345789999999999999    999999875321           1134679999987532   3456788999999995


Q ss_pred             hccCCCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccc
Q 005958          149 RRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASR  228 (667)
Q Consensus       149 ~~~~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~  228 (667)
                            ||||+++++++.     .++..+++|| ++.+++|.+++..........                  ......+
T Consensus        78 ------~~~i~~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~~~~~~~------------------~~~~~~~  127 (296)
T cd05051          78 ------DPNIARLLGVCT-----VDPPLCMIME-YMENGDLNQFLQKHVAETSGL------------------ACNSKSL  127 (296)
T ss_pred             ------CCCEeEEEEEEe-----cCCCcEEEEe-cCCCCCHHHHHHhcccccccc------------------cccCCCC
Confidence                  999999999998     6789999999 999999999998653111000                  0011123


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccC
Q 005958          229 QLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMD  297 (667)
Q Consensus       229 ~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~  297 (667)
                      +...++.++.|++.||+|||++||+||||||+||+++. ++.++|+|||++......           ...|+|||.+. 
T Consensus       128 ~~~~~~~~~~~i~~al~~LH~~~i~H~dlkp~Nili~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-  205 (296)
T cd05051         128 SFSTLLYMATQIASGMRYLESLNFVHRDLATRNCLVGK-NYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVL-  205 (296)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCccccccchhceeecC-CCceEEccccceeecccCcceeecCcCCCCceecCHHHhh-
Confidence            45678899999999999999999999999999999998 899999999998754322           14699999654 


Q ss_pred             CCCCCchhhHHHHHHHHHHHHh--CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHH
Q 005958          298 RRQMMIAFDMRCVGFMMAKMVL--RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWN  375 (667)
Q Consensus       298 ~~~ys~ksDIWSLGviLyemlt--G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~d  375 (667)
                      ...++.++|||||||++|||++  +..||...            +...........+...  ......+....+++++.+
T Consensus       206 ~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~  271 (296)
T cd05051         206 LGKFTTKSDVWAFGVTLWEILTLCREQPYEHL------------TDQQVIENAGHFFRDD--GRQIYLPRPPNCPKDIYE  271 (296)
T ss_pred             cCCCCccchhhhhHHHHHHHHhcCCCCCCCCc------------ChHHHHHHHHhccccc--cccccCCCccCCCHHHHH
Confidence            4458999999999999999998  66776421            1111111111111000  001112223456789999


Q ss_pred             HHHHhhhcCcCCCCCHHHHHc
Q 005958          376 LLSLLLATKPSKRISCLDALR  396 (667)
Q Consensus       376 LI~~~L~~DP~kRpSa~elL~  396 (667)
                      ||.+||+.||++|||+.++++
T Consensus       272 li~~cl~~~p~~Rpt~~el~~  292 (296)
T cd05051         272 LMLECWRRDEEDRPTFREIHL  292 (296)
T ss_pred             HHHHHhccChhcCCCHHHHHH
Confidence            999999999999999999965

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=100.00  E-value=1.9e-35  Score=303.58  Aligned_cols=244  Identities=20%  Similarity=0.222  Sum_probs=192.7

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-----hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ++|++.+.||+|+||    .||+|.+..     +++.||+|.++..     ...+.+.+|+++++++.      |+||++
T Consensus         2 ~~y~~~~~lg~g~~~----~v~~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~------~~~i~~   66 (267)
T cd08224           2 GNFKIEKKIGKGQFS----VVYKAICLL-----DGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLD------HPNVIK   66 (267)
T ss_pred             CceeeeeeeccCCce----EEEEEEEcC-----CCCEEEEEEeecccccchhhHHHHHHHHHHHHhCC------CCCeee
Confidence            689999999999999    999999997     7899999988641     22456789999999994      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     ..+..++||| |+++|+|.+++......     ...+++                    ..+..++.||
T Consensus        67 ~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~~~-----~~~~~~--------------------~~~~~~~~~l  115 (267)
T cd08224          67 YLASFI-----ENNELNIVLE-LADAGDLSRMIKHFKKQ-----KRLIPE--------------------RTIWKYFVQL  115 (267)
T ss_pred             eeeeee-----cCCeEEEEEe-cCCCCCHHHHHHHhccc-----CCCcCH--------------------HHHHHHHHHH
Confidence            999998     7788999999 99999999998753210     112333                    5678899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      +.||.|||+.||+|+||||+||+++. ++.++|+|||++..+...         ...|+|||.+. ...++.++||||||
T Consensus       116 ~~~l~~lh~~~i~h~dl~p~nil~~~-~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~apE~~~-~~~~~~~~Di~slG  193 (267)
T cd08224         116 CSALEHMHSKRIMHRDIKPANVFITA-TGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIH-ENGYNFKSDIWSLG  193 (267)
T ss_pred             HHHHHHHHhCCEecCCcChhhEEECC-CCcEEEeccceeeeccCCCcccceecCCccccCHHHhc-cCCCCchhcHHHHH
Confidence            99999999999999999999999998 899999999998755432         25699999654 45689999999999


Q ss_pred             HHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCccc-ccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          312 FMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQI-LDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       312 viLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      |++|+|++|+.||....          ..   ..+..........      .+. ....+.++.++|.+||..+|++|||
T Consensus       194 ~il~~l~~g~~p~~~~~----------~~---~~~~~~~~~~~~~------~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~  254 (267)
T cd08224         194 CLLYEMAALQSPFYGDK----------MN---LYSLCKKIEKCDY------PPLPADHYSEELRDLVSRCINPDPEKRPD  254 (267)
T ss_pred             HHHHHHHHCCCCcccCC----------cc---HHHHHhhhhcCCC------CCCChhhcCHHHHHHHHHHcCCCcccCCC
Confidence            99999999999984211          11   1111111111100      011 1256779999999999999999999


Q ss_pred             HHHHHc
Q 005958          391 CLDALR  396 (667)
Q Consensus       391 a~elL~  396 (667)
                      +.++++
T Consensus       255 ~~~il~  260 (267)
T cd08224         255 ISYVLQ  260 (267)
T ss_pred             HHHHHH
Confidence            999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=100.00  E-value=1.1e-35  Score=305.34  Aligned_cols=242  Identities=16%  Similarity=0.210  Sum_probs=191.8

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ++..++|+++++||+|+||    .||+|...      +++.||+|.+.... ....+.+|+.+++.++      ||||++
T Consensus         2 ~~~~~~~~~~~~ig~G~~g----~v~~~~~~------~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~------h~~i~~   65 (260)
T cd05067           2 EVPRETLKLVKKLGAGQFG----EVWMGYYN------GHTKVAIKSLKQGSMSPEAFLAEANLMKQLQ------HPRLVR   65 (260)
T ss_pred             ccchHHceeeeeeccCccc----eEEeeecC------CCceEEEEEecCCCCcHHHHHHHHHHHHhcC------CcCeee
Confidence            3456889999999999999    99999876      47889999987633 3456789999999994      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.      .+..+++|| |+.+|+|.+++....       ...+++                    ..+..++.|+
T Consensus        66 ~~~~~~------~~~~~~v~e-~~~~~~L~~~~~~~~-------~~~~~~--------------------~~~~~i~~~i  111 (260)
T cd05067          66 LYAVVT------QEPIYIITE-YMENGSLVDFLKTPE-------GIKLTI--------------------NKLIDMAAQI  111 (260)
T ss_pred             EEEEEc------cCCcEEEEE-cCCCCCHHHHHHhcC-------CCCCCH--------------------HHHHHHHHHH
Confidence            999875      356899999 999999999987532       113333                    4577899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC----------CCCCCCcccccCCCCCCchhhHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED----------GPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~----------~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      +.||+|||++||+||||||+||+++. ++.++|+|||++......          ...|+|||.+ ....++.++|||||
T Consensus       112 ~~al~~LH~~~i~H~dl~p~ni~i~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~pe~~-~~~~~~~~~Di~sl  189 (260)
T cd05067         112 AEGMAFIERKNYIHRDLRAANILVSE-TLCCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAI-NYGTFTIKSDVWSF  189 (260)
T ss_pred             HHHHHHHhcCCeecccccHHhEEEcC-CCCEEEccCcceeecCCCCcccccCCcccccccCHHHh-ccCCcCcccchHHH
Confidence            99999999999999999999999998 899999999999765421          1369999954 45568999999999


Q ss_pred             HHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          311 GFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       311 GviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      ||++|||++ |++||...            ........+....         ..+.....+.++.+||.+||+.||++||
T Consensus       190 G~~l~el~~~g~~p~~~~------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~li~~~l~~~p~~Rp  248 (260)
T cd05067         190 GILLTEIVTYGRIPYPGM------------TNPEVIQNLERGY---------RMPRPDNCPEELYELMRLCWKEKPEERP  248 (260)
T ss_pred             HHHHHHHHhCCCCCCCCC------------ChHHHHHHHHcCC---------CCCCCCCCCHHHHHHHHHHccCChhhCC
Confidence            999999998 99998521            2222222221111         1122345678999999999999999999


Q ss_pred             CHHHHHc
Q 005958          390 SCLDALR  396 (667)
Q Consensus       390 Sa~elL~  396 (667)
                      +++++++
T Consensus       249 ~~~~l~~  255 (260)
T cd05067         249 TFEYLRS  255 (260)
T ss_pred             CHHHHHH
Confidence            9999875

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=100.00  E-value=9.6e-36  Score=305.92  Aligned_cols=241  Identities=17%  Similarity=0.180  Sum_probs=190.4

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-hhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-QAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      +..++|++.++||+|+||    .||+|.+..      +..||+|.+... ...+.+.+|+.++++++      |+||+++
T Consensus         3 ~~~~~~~~~~~ig~g~~~----~v~~~~~~~------~~~~~~k~~~~~~~~~~~~~~E~~~l~~l~------~~~i~~~   66 (260)
T cd05070           3 IPRESLQLIKKLGNGQFG----EVWMGTWNG------NTKVAVKTLKPGTMSPESFLEEAQIMKKLR------HDKLVQL   66 (260)
T ss_pred             CchHHhhhhheeccccCc----eEEEEEecC------CceeEEEEecCCCCCHHHHHHHHHHHHhcC------CCceEEE
Confidence            456789999999999999    999998764      677999998753 23456789999999994      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.      ....+++|| |+++++|.+++.....       ..+++                    ..++.++.|++
T Consensus        67 ~~~~~------~~~~~lv~e-~~~~~~L~~~~~~~~~-------~~~~~--------------------~~~~~~~~~l~  112 (260)
T cd05070          67 YAVVS------EEPIYIVTE-YMSKGSLLDFLKDGEG-------RALKL--------------------PNLVDMAAQVA  112 (260)
T ss_pred             EeEEC------CCCcEEEEE-ecCCCcHHHHHHhcCC-------CCCCH--------------------HHHHHHHHHHH
Confidence            99875      345789999 9999999999976320       12333                    45788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC----------CCCCCcccccCCCCCCchhhHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG----------PNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~----------~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      .||.|||++||+||||||+||+++. ++.++|+|||++..+....          ..|+|||.+ ....++.++||||||
T Consensus       113 ~al~~lH~~~i~H~di~p~Nili~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG  190 (260)
T cd05070         113 AGMAYIERMNYIHRDLRSANILVGD-GLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAA-LYGRFTIKSDVWSFG  190 (260)
T ss_pred             HHHHHHHHCCcccCCCccceEEEeC-CceEEeCCceeeeeccCcccccccCCCCCccccChHHH-hcCCCcchhhhHHHH
Confidence            9999999999999999999999998 8899999999997654321          359999954 455689999999999


Q ss_pred             HHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          312 FMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       312 viLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      |++|+|++ |.+||...            ......+.+.   ...      ..+.....+.++.+|+.+||..||++|||
T Consensus       191 ~~l~~l~~~g~~p~~~~------------~~~~~~~~~~---~~~------~~~~~~~~~~~~~~li~~~l~~~p~~Rpt  249 (260)
T cd05070         191 ILLTELVTKGRVPYPGM------------NNREVLEQVE---RGY------RMPCPQDCPISLHELMLQCWKKDPEERPT  249 (260)
T ss_pred             HHHHHHHhcCCCCCCCC------------CHHHHHHHHH---cCC------CCCCCCcCCHHHHHHHHHHcccCcccCcC
Confidence            99999999 89998532            1222222211   110      11223456789999999999999999999


Q ss_pred             HHHHHc
Q 005958          391 CLDALR  396 (667)
Q Consensus       391 a~elL~  396 (667)
                      +.++++
T Consensus       250 ~~~l~~  255 (260)
T cd05070         250 FEYLQS  255 (260)
T ss_pred             HHHHHH
Confidence            999864

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=100.00  E-value=1.6e-35  Score=308.37  Aligned_cols=261  Identities=16%  Similarity=0.155  Sum_probs=196.8

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      +...+|.+.++||+|+||    .||+|.........++..+|+|.+...  .....+.+|+++++.++      |+||++
T Consensus         2 ~~~~~~~~~~~lg~g~~g----~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~   71 (280)
T cd05092           2 IKRRDIVLKWELGEGAFG----KVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQ------HQHIVR   71 (280)
T ss_pred             CChHhceeccccCCccCC----eEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCC------CCCCce
Confidence            345789999999999999    999998653222235778999998752  23456789999999994      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     ..+..+++|| |+++|+|.+++.........      .        +.........++...+..++.||
T Consensus        72 ~~~~~~-----~~~~~~lv~e-~~~~~~L~~~i~~~~~~~~~------~--------~~~~~~~~~~l~~~~~~~~~~qi  131 (280)
T cd05092          72 FYGVCT-----EGRPLLMVFE-YMRHGDLNRFLRSHGPDAKI------L--------AGGEDVAPGQLTLGQMLAIASQI  131 (280)
T ss_pred             EEEEEe-----cCCceEEEEe-cCCCCCHHHHHHhcCcchhh------h--------cccccCCccccCHHHHHHHHHHH
Confidence            999998     7788999999 99999999999875411100      0        00001111234557788999999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhhHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDMRC  309 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksDIWS  309 (667)
                      +.||+|||++||+||||||+|||++. ++.+||+|||++......           .+.|+|||.+. ...++.++||||
T Consensus       132 ~~al~~LH~~~i~H~dlkp~nil~~~-~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~s  209 (280)
T cd05092         132 ASGMVYLASLHFVHRDLATRNCLVGQ-GLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESIL-YRKFTTESDIWS  209 (280)
T ss_pred             HHHHHHHHHCCeecccccHhhEEEcC-CCCEEECCCCceeEcCCCceeecCCCccccccccCHHHhc-cCCcCchhhHHH
Confidence            99999999999999999999999998 899999999998754321           24699999554 455899999999


Q ss_pred             HHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCC
Q 005958          310 VGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  388 (667)
Q Consensus       310 LGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kR  388 (667)
                      |||++|||++ |.+||....            .......   .....      .......+++.+.+||.+||+.||++|
T Consensus       210 lG~il~el~~~g~~p~~~~~------------~~~~~~~---~~~~~------~~~~~~~~~~~~~~li~~cl~~~P~~R  268 (280)
T cd05092         210 FGVVLWEIFTYGKQPWYQLS------------NTEAIEC---ITQGR------ELERPRTCPPEVYAIMQGCWQREPQQR  268 (280)
T ss_pred             HHHHHHHHHcCCCCCCccCC------------HHHHHHH---HHcCc------cCCCCCCCCHHHHHHHHHHccCChhhC
Confidence            9999999998 899985221            1111111   11111      112234567899999999999999999


Q ss_pred             CCHHHHHc
Q 005958          389 ISCLDALR  396 (667)
Q Consensus       389 pSa~elL~  396 (667)
                      |+++++++
T Consensus       269 p~~~~l~~  276 (280)
T cd05092         269 MVIKDIHS  276 (280)
T ss_pred             CCHHHHHH
Confidence            99999875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=100.00  E-value=1.4e-35  Score=305.81  Aligned_cols=241  Identities=17%  Similarity=0.169  Sum_probs=189.3

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      +..++|++.++||+|+||    .||+|.+..      ...||+|++.... ..+.+.+|+++++.++      ||||+++
T Consensus         3 ~~~~~~~~~~~lg~g~~~----~v~~~~~~~------~~~valK~~~~~~~~~~~~~~E~~~l~~l~------~~~i~~~   66 (262)
T cd05071           3 IPRESLRLEVKLGQGCFG----EVWMGTWNG------TTRVAIKTLKPGTMSPEAFLQEAQVMKKLR------HEKLVQL   66 (262)
T ss_pred             CChHHeeEeeecCCCCCC----cEEEEEecC------CceEEEEecccCccCHHHHHHHHHHHHhCC------CCCcceE
Confidence            345789999999999999    999998875      3569999997532 3456789999999994      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++.+.      ....++||| |+++|+|.+++.+..       ...++                    ...+..++.|++
T Consensus        67 ~~~~~------~~~~~lv~e-~~~~~~L~~~~~~~~-------~~~~~--------------------~~~~~~~~~~l~  112 (262)
T cd05071          67 YAVVS------EEPIYIVTE-YMSKGSLLDFLKGEM-------GKYLR--------------------LPQLVDMAAQIA  112 (262)
T ss_pred             EEEEC------CCCcEEEEE-cCCCCcHHHHHhhcc-------ccCCC--------------------HHHHHHHHHHHH
Confidence            99875      345799999 999999999997532       01233                    345778999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC----------CCCCCcccccCCCCCCchhhHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG----------PNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~----------~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      .||+|||++||+||||||+||+++. ++.+||+|||.+.......          ..|+|||.+ ....++.++||||||
T Consensus       113 ~aL~~lH~~~i~H~dl~p~Nill~~-~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~-~~~~~~~~~DvwslG  190 (262)
T cd05071         113 SGMAYVERMNYVHRDLRAANILVGE-NLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAA-LYGRFTIKSDVWSFG  190 (262)
T ss_pred             HHHHHHHHCCccccccCcccEEEcC-CCcEEeccCCceeeccccccccccCCcccceecCHhHh-ccCCCCchhhHHHHH
Confidence            9999999999999999999999998 8999999999997554321          359999954 455689999999999


Q ss_pred             HHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          312 FMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       312 viLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      |++|+|++ |.+||...            ........   .....      ..+.....+.++.+||.+||+.||++||+
T Consensus       191 ~~l~ellt~g~~p~~~~------------~~~~~~~~---~~~~~------~~~~~~~~~~~l~~li~~~l~~~p~~Rp~  249 (262)
T cd05071         191 ILLTELTTKGRVPYPGM------------VNREVLDQ---VERGY------RMPCPPECPESLHDLMCQCWRKEPEERPT  249 (262)
T ss_pred             HHHHHHHcCCCCCCCCC------------ChHHHHHH---HhcCC------CCCCccccCHHHHHHHHHHccCCcccCCC
Confidence            99999999 88888521            12221111   11110      11223456789999999999999999999


Q ss_pred             HHHHHc
Q 005958          391 CLDALR  396 (667)
Q Consensus       391 a~elL~  396 (667)
                      +.++++
T Consensus       250 ~~~~~~  255 (262)
T cd05071         250 FEYLQA  255 (262)
T ss_pred             HHHHHH
Confidence            999875

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-38  Score=363.99  Aligned_cols=247  Identities=20%  Similarity=0.258  Sum_probs=206.0

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh----HHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA----QRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~----~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      +++-+..||.|.||    .||-|.+..     +|...|+|-++-...    ...+.+|..+|..+      +|||+|++|
T Consensus      1236 rWqrg~~Ig~G~fG----~VYtavN~~-----tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~l------nHpNlV~Yy 1300 (1509)
T KOG4645|consen 1236 RWQRGNFIGGGTFG----KVYTAVNLD-----TGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGL------NHPNLVRYY 1300 (1509)
T ss_pred             eeccccccCCccee----eeEEeecCC-----ccchhhhhhhhcCccccccCcchHHHHHHHHhc------cCccccccC
Confidence            57778899999999    999999998     899999998874222    23458899999999      599999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      |+-.     ..+.++|.|| ||++|+|.+.+...+         ..+|                    ...+.|..|++.
T Consensus      1301 GVEv-----HRekv~IFME-yC~~GsLa~ll~~gr---------i~dE--------------------~vt~vyt~qll~ 1345 (1509)
T KOG4645|consen 1301 GVEV-----HREKVYIFME-YCEGGSLASLLEHGR---------IEDE--------------------MVTRVYTKQLLE 1345 (1509)
T ss_pred             ceee-----cHHHHHHHHH-HhccCcHHHHHHhcc---------hhhh--------------------hHHHHHHHHHHH
Confidence            9988     7889999999 999999999998743         2222                    356789999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-------------CCCCCCcccccCCC--CCCchhhH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-------------GPNNSSPDSNMDRR--QMMIAFDM  307 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-------------~~~Y~APE~l~~~~--~ys~ksDI  307 (667)
                      |+.|||++|||||||||+||+++. +|.+|++|||.|..+...             .+.|||||++.+..  ...-++||
T Consensus      1346 gla~LH~~gIVHRDIK~aNI~Ld~-~g~iK~~DFGsa~ki~~~~~~~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~Di 1424 (1509)
T KOG4645|consen 1346 GLAYLHEHGIVHRDIKPANILLDF-NGLIKYGDFGSAVKIKNNAQTMPGELQSMMGTPMYMAPEVITGTKGKGHGGAADI 1424 (1509)
T ss_pred             HHHHHHhcCceecCCCccceeeec-CCcEEeecccceeEecCchhcCCHHHHhhcCCchhcCchhhcccccCCCCcchhh
Confidence            999999999999999999999999 899999999999876543             28899999876443  45679999


Q ss_pred             HHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          308 RCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       308 WSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      ||||||+.||+||+.||.+.+..|.++-..|              .+.      ..+++.++|++.+|||.+||+.||++
T Consensus      1425 WslGCVVlEM~tGkrPW~~~dne~aIMy~V~--------------~gh------~Pq~P~~ls~~g~dFle~Cl~~dP~~ 1484 (1509)
T KOG4645|consen 1425 WSLGCVVLEMATGKRPWAELDNEWAIMYHVA--------------AGH------KPQIPERLSSEGRDFLEHCLEQDPKM 1484 (1509)
T ss_pred             hcccceEEEeecCCCchhhccchhHHHhHHh--------------ccC------CCCCchhhhHhHHHHHHHHHhcCchh
Confidence            9999999999999999987776665542221              111      12344568999999999999999999


Q ss_pred             CCCHHHHHcCCCCCCCC
Q 005958          388 RISCLDALRHPFLCGPR  404 (667)
Q Consensus       388 RpSa~elL~HPwf~~~~  404 (667)
                      |+++.|+|+|.|-+...
T Consensus      1485 Rw~~~qlle~~f~~~~~ 1501 (1509)
T KOG4645|consen 1485 RWTASQLLEHAFGKSCT 1501 (1509)
T ss_pred             hhHHHHHHHhhcccccc
Confidence            99999999999876543

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-37  Score=328.38  Aligned_cols=247  Identities=18%  Similarity=0.227  Sum_probs=204.1

Q ss_pred             eEE--EeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcc----hhhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           88 FKI--LDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS----VQAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        88 y~i--~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~----~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      |++  .+.||+|.||    +||-|+++.     +|+.||||+|.+    .+.+..+++|+.||+++.      ||.||.+
T Consensus       564 YQif~devLGSGQFG----~VYgg~hRk-----tGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~------HPGiV~l  628 (888)
T KOG4236|consen  564 YQIFADEVLGSGQFG----TVYGGKHRK-----TGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLH------HPGIVNL  628 (888)
T ss_pred             HHhhhHhhccCCcce----eeecceecc-----cCceeeeeeeecccCCCchHHHHHHHHHHHHhcC------CCCeeEE
Confidence            554  3889999999    999999998     899999999986    334567899999999995      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ...|+     ..+.+++||| -+.| |+.+.|-...       ..+|+|                    ..-++++.||+
T Consensus       629 e~M~E-----T~ervFVVME-Kl~G-DMLEMILSsE-------kgRL~e--------------------r~TkFlvtQIL  674 (888)
T KOG4236|consen  629 ECMFE-----TPERVFVVME-KLHG-DMLEMILSSE-------KGRLPE--------------------RITKFLVTQIL  674 (888)
T ss_pred             EEeec-----CCceEEEEeh-hhcc-hHHHHHHHhh-------cccchH--------------------HHHHHHHHHHH
Confidence            99999     7789999999 8888 8887775532       236665                    45688999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCC--CeEEEeeecccccccCCC--------CCCCCcccccCCCCCCchhhHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVD--RHIKVGILGNAADFYEDG--------PNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~--~~vKL~DFGlA~~~~~~~--------~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      .||.|||-++|+|+||||||||+.+.+  -++||||||+|+.+....        |.|.|||++. .+.|+..-|+||+|
T Consensus       675 ~ALr~LH~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEksFRrsVVGTPAYLaPEVLr-nkGyNrSLDMWSVG  753 (888)
T KOG4236|consen  675 VALRYLHFKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKSFRRSVVGTPAYLAPEVLR-NKGYNRSLDMWSVG  753 (888)
T ss_pred             HHHHHhhhcceeeccCCchheeeccCCCCCceeeccccceeecchhhhhhhhcCCccccCHHHHh-hccccccccceeee
Confidence            999999999999999999999998733  479999999999887653        8999999655 45599999999999


Q ss_pred             HHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH
Q 005958          312 FMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC  391 (667)
Q Consensus       312 viLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa  391 (667)
                      ||+|--+.|..||.+.+              ++.+.+++.--..      ....|..++++++|||..+|+..=++|.|.
T Consensus       754 VIiYVsLSGTFPFNEdE--------------dIndQIQNAaFMy------Pp~PW~eis~~AidlIn~LLqVkm~kRysv  813 (888)
T KOG4236|consen  754 VIIYVSLSGTFPFNEDE--------------DINDQIQNAAFMY------PPNPWSEISPEAIDLINNLLQVKMRKRYSV  813 (888)
T ss_pred             EEEEEEecccccCCCcc--------------chhHHhhcccccc------CCCchhhcCHHHHHHHHHHHHHHHHHhcch
Confidence            99999999999996322              2222222211111      123466789999999999999999999999


Q ss_pred             HHHHcCCCCCCCC
Q 005958          392 LDALRHPFLCGPR  404 (667)
Q Consensus       392 ~elL~HPwf~~~~  404 (667)
                      ++.|.|||+++..
T Consensus       814 dk~lsh~Wlq~yq  826 (888)
T KOG4236|consen  814 DKSLSHPWLQDYQ  826 (888)
T ss_pred             Hhhccchhhhcch
Confidence            9999999999864

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.1e-35  Score=302.89  Aligned_cols=243  Identities=18%  Similarity=0.192  Sum_probs=193.7

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ++..++|++.+.||.|+||    .||+|.+..      ++.||||.+... ...+.+.+|+.+++++.      ||||++
T Consensus         2 ~~~~~~~~i~~~ig~g~~~----~v~~~~~~~------~~~~~vK~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~   65 (261)
T cd05034           2 EIPRESLKLERKLGAGQFG----EVWMGTWNG------TTKVAVKTLKPGTMSPEAFLQEAQIMKKLR------HDKLVQ   65 (261)
T ss_pred             ccchhheeeeeeeccCcce----EEEEEEEcC------CceEEEEEecCCccCHHHHHHHHHHHhhCC------CCCEee
Confidence            3567899999999999999    999999764      578999998753 23456789999999994      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     .....++||| |+++++|.+++....       ...++                    ...+..++.||
T Consensus        66 ~~~~~~-----~~~~~~~v~e-~~~~~~L~~~i~~~~-------~~~~~--------------------~~~~~~~~~~i  112 (261)
T cd05034          66 LYAVCS-----EEEPIYIVTE-YMSKGSLLDFLKSGE-------GKKLR--------------------LPQLVDMAAQI  112 (261)
T ss_pred             eeeeee-----cCCceEEEEe-ccCCCCHHHHHhccc-------cCCCC--------------------HHHHHHHHHHH
Confidence            999998     6678999999 999999999997632       01233                    34578899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC----------CCCCCCcccccCCCCCCchhhHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED----------GPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~----------~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      +.||.|||++||+|+||||+||+++. ++.+||+|||++......          ...|+|||.+. ...++.++||||+
T Consensus       113 ~~al~~lh~~~i~h~di~p~nili~~-~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~-~~~~~~~~Di~sl  190 (261)
T cd05034         113 AEGMAYLESRNYIHRDLAARNILVGE-NLVCKIADFGLARLIEDDEYTAREGAKFPIKWTAPEAAN-YGRFTIKSDVWSF  190 (261)
T ss_pred             HHHHHHHHhCCcccCCcchheEEEcC-CCCEEECccccceeccchhhhhhhccCCCccccCHHHhc-cCCcCchhHHHHH
Confidence            99999999999999999999999998 899999999998765422          14699999554 5568999999999


Q ss_pred             HHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          311 GFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       311 GviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      ||++|+|++ |++||..            .......+.   .....      ..+.....+.++.+++.+||+.||++||
T Consensus       191 G~il~~l~t~g~~p~~~------------~~~~~~~~~---~~~~~------~~~~~~~~~~~~~~~i~~~l~~~p~~Rp  249 (261)
T cd05034         191 GILLTEIVTYGRVPYPG------------MTNREVLEQ---VERGY------RMPRPPNCPEELYDLMLQCWDKDPEERP  249 (261)
T ss_pred             HHHHHHHHhCCCCCCCC------------CCHHHHHHH---HHcCC------CCCCCCCCCHHHHHHHHHHcccCcccCC
Confidence            999999998 9999852            122211111   11110      1122234578999999999999999999


Q ss_pred             CHHHHHc
Q 005958          390 SCLDALR  396 (667)
Q Consensus       390 Sa~elL~  396 (667)
                      +++++++
T Consensus       250 ~~~~l~~  256 (261)
T cd05034         250 TFEYLQS  256 (261)
T ss_pred             CHHHHHH
Confidence            9999874

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=1.6e-35  Score=303.95  Aligned_cols=232  Identities=16%  Similarity=0.185  Sum_probs=183.3

Q ss_pred             EeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEec
Q 005958           93 RVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSH  168 (667)
Q Consensus        93 ~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~  168 (667)
                      +||+|+||    .||+|.+....   +++.+|+|+++...    ..+.+.+|+.+++.+      +||||+++++++.  
T Consensus         2 ~lg~G~~g----~v~~~~~~~~~---~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~--   66 (257)
T cd05116           2 ELGSGNFG----TVKKGMYKMKK---SEKTVAVKILKNDNNDPALKDELLREANVMQQL------DNPYIVRMIGICE--   66 (257)
T ss_pred             cCCCcCCc----ceEEeEEecCC---CceEEEEEEccCCCCcHHHHHHHHHHHHHHHhC------CCCCcceEEEEEc--
Confidence            68999999    99999764321   67899999986432    234578899999999      4999999999875  


Q ss_pred             ccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 005958          169 TTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLH  248 (667)
Q Consensus       169 ~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLH  248 (667)
                          ....++||| |+++|+|.+++....         .+++                    ..+..++.|++.||+|||
T Consensus        67 ----~~~~~lv~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~~i~~qi~~al~~lH  112 (257)
T cd05116          67 ----AESWMLVME-LAELGPLNKFLQKNK---------HVTE--------------------KNITELVHQVSMGMKYLE  112 (257)
T ss_pred             ----CCCcEEEEe-cCCCCcHHHHHHhcC---------CCCH--------------------HHHHHHHHHHHHHHHHHH
Confidence                346799999 999999999997643         3454                    346779999999999999


Q ss_pred             HCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC------------CCCCCcccccCCCCCCchhhHHHHHHHHHH
Q 005958          249 SHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG------------PNNSSPDSNMDRRQMMIAFDMRCVGFMMAK  316 (667)
Q Consensus       249 s~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~------------~~Y~APE~l~~~~~ys~ksDIWSLGviLye  316 (667)
                      ++||+||||||.||+++. ++.+||+|||++.......            ..|+|||.+ ....++.++|||||||++||
T Consensus       113 ~~~i~H~dlkp~nill~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~~l~e  190 (257)
T cd05116         113 ETNFVHRDLAARNVLLVT-QHYAKISDFGLSKALGADENYYKAKTHGKWPVKWYAPECM-NYYKFSSKSDVWSFGVLMWE  190 (257)
T ss_pred             HCCEeecccchhhEEEcC-CCeEEECCCccccccCCCCCeeeecCCCCCCccccCHhHh-ccCCcCchhHHHHHHHHHHH
Confidence            999999999999999998 8899999999997653321            479999954 45568899999999999999


Q ss_pred             HHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHH
Q 005958          317 MVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDAL  395 (667)
Q Consensus       317 mlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL  395 (667)
                      |++ |.+||...            ....+.+.+..   ..      ..+....+++++++||.+||+.||++||++++|.
T Consensus       191 l~t~g~~p~~~~------------~~~~~~~~i~~---~~------~~~~~~~~~~~l~~li~~~~~~~p~~Rp~~~~i~  249 (257)
T cd05116         191 AFSYGQKPYKGM------------KGNEVTQMIES---GE------RMECPQRCPPEMYDLMKLCWTYGVDERPGFAVVE  249 (257)
T ss_pred             HHhCCCCCCCCC------------CHHHHHHHHHC---CC------CCCCCCCCCHHHHHHHHHHhccCchhCcCHHHHH
Confidence            998 99998521            22222222221   11      1223346789999999999999999999999886


Q ss_pred             c
Q 005958          396 R  396 (667)
Q Consensus       396 ~  396 (667)
                      +
T Consensus       250 ~  250 (257)
T cd05116         250 L  250 (257)
T ss_pred             H
Confidence            4

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=100.00  E-value=9.7e-36  Score=310.45  Aligned_cols=250  Identities=21%  Similarity=0.258  Sum_probs=201.8

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-HHHHHHHHHHHHHHhhccCCCCCcceEEEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-QRRGRRAIEVLKKLVRRRLMYHSYSMQVHGY  164 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~  164 (667)
                      +.|++.+.||.|+||    .||+|.+..     ++..||+|++..... ...+.+|+++++.+.      |+||+++++.
T Consensus        19 ~~~~~~~~l~~g~~~----~v~~~~~~~-----~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~------~~~i~~~~~~   83 (286)
T cd06614          19 ELYKNLEKIGEGASG----EVYKATDRA-----TGKEVAIKKMRLRKQNKELIINEILIMKDCK------HPNIVDYYDS   83 (286)
T ss_pred             ccchHhHhccCCCCe----EEEEEEEcc-----CCcEEEEEEEecCchhHHHHHHHHHHHHHCC------CCCeeEEEEE
Confidence            668999999999999    999999987     789999999976432 456788999999994      9999999999


Q ss_pred             EEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHH
Q 005958          165 VSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGV  244 (667)
Q Consensus       165 ~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL  244 (667)
                      +.     ..+..|+|+| |+++++|.+++..+.        ..+++                    ..+..++.|++.||
T Consensus        84 ~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~--------~~l~~--------------------~~~~~i~~~i~~~L  129 (286)
T cd06614          84 YL-----VGDELWVVME-YMDGGSLTDIITQNF--------VRMNE--------------------PQIAYVCREVLQGL  129 (286)
T ss_pred             EE-----ECCEEEEEEe-ccCCCcHHHHHHHhc--------cCCCH--------------------HHHHHHHHHHHHHH
Confidence            98     6789999999 999899999998753        13343                    45778999999999


Q ss_pred             HHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHHHH
Q 005958          245 NYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMA  315 (667)
Q Consensus       245 ~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGviLy  315 (667)
                      .|||+.||+|+||+|+||+++. ++.++|+|||++......         ...|+|||.+. ...++.++|+|||||++|
T Consensus       130 ~~lH~~gi~H~dl~p~ni~i~~-~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~-~~~~~~~~Dv~slGvil~  207 (286)
T cd06614         130 EYLHSQNVIHRDIKSDNILLSK-DGSVKLADFGFAAQLTKEKSKRNSVVGTPYWMAPEVIK-RKDYGPKVDIWSLGIMCI  207 (286)
T ss_pred             HHHHhCCeeeCCCChhhEEEcC-CCCEEECccchhhhhccchhhhccccCCcccCCHhHhc-CCCCCCccccHHHHHHHH
Confidence            9999999999999999999998 899999999988654432         25799999554 456899999999999999


Q ss_pred             HHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHH
Q 005958          316 KMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDAL  395 (667)
Q Consensus       316 emltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL  395 (667)
                      +|++|..||...            .+......+   .....    ........++.++++||.+||+.+|.+||++.+++
T Consensus       208 ~l~~g~~p~~~~------------~~~~~~~~~---~~~~~----~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il  268 (286)
T cd06614         208 EMAEGEPPYLRE------------PPLRALFLI---TTKGI----PPLKNPEKWSPEFKDFLNKCLVKDPEKRPSAEELL  268 (286)
T ss_pred             HHHhCCCCCCCC------------CHHHHHHHH---HhcCC----CCCcchhhCCHHHHHHHHHHhccChhhCcCHHHHh
Confidence            999999998421            111111111   11110    11122234678999999999999999999999999


Q ss_pred             cCCCCCCCCC
Q 005958          396 RHPFLCGPRW  405 (667)
Q Consensus       396 ~HPwf~~~~~  405 (667)
                      +||||....+
T Consensus       269 ~~~~~~~~~~  278 (286)
T cd06614         269 QHPFLKKACP  278 (286)
T ss_pred             hChHhhccCc
Confidence            9999998553

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=100.00  E-value=8.6e-36  Score=348.32  Aligned_cols=253  Identities=16%  Similarity=0.170  Sum_probs=194.7

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-----hhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-----QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-----~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      +++|++.++||+|+||    .||+|++..     +++.||||++...     ...+++.+|+++++.+.      ||||+
T Consensus         1 igrYeIi~~LGkGgfG----~VYlA~d~~-----tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~------HPNIV   65 (932)
T PRK13184          1 MQRYDIIRLIGKGGMG----EVYLAYDPV-----CSRRVALKKIREDLSENPLLKKRFLREAKIAADLI------HPGIV   65 (932)
T ss_pred             CCCeEEEEEEecCCCE----EEEEEEECC-----CCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCC------CcCcC
Confidence            4789999999999999    999999987     7999999998752     22346788999999994      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++.     +.+..|+||| |++||+|.+++.......      .+.+..            ....+...+..++.|
T Consensus        66 kl~~v~~-----d~~~lyLVME-Y~eGGSL~~lL~s~~~~~------~l~e~~------------~~~lsv~~iL~I~~Q  121 (932)
T PRK13184         66 PVYSICS-----DGDPVYYTMP-YIEGYTLKSLLKSVWQKE------SLSKEL------------AEKTSVGAFLSIFHK  121 (932)
T ss_pred             eEEEEEe-----eCCEEEEEEE-cCCCCCHHHHHHHhhhcc------ccchhh------------hcccCHHHHHHHHHH
Confidence            9999998     7789999999 999999999997532110      111110            112234567889999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeeccccccc---------------------------CCCCCCCCc
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFY---------------------------EDGPNNSSP  292 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~---------------------------~~~~~Y~AP  292 (667)
                      |+.||+|||++||+||||||+|||++. ++.+||+|||+|....                           .+.+.|+||
T Consensus       122 Ia~AL~yLHs~GIIHRDLKPeNILLd~-dg~vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAP  200 (932)
T PRK13184        122 ICATIEYVHSKGVLHRDLKPDNILLGL-FGEVVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAP  200 (932)
T ss_pred             HHHHHHHHHHCCccccCCchheEEEcC-CCCEEEEecCcceecccccccccccccccccccccccccCCCCCCCCCCCCH
Confidence            999999999999999999999999998 8999999999997651                           134689999


Q ss_pred             ccccCCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHH
Q 005958          293 DSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGA  372 (667)
Q Consensus       293 E~l~~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e  372 (667)
                      |.+. +..++.++||||+||++|||++|.+||....            ......  .......     ........+++.
T Consensus       201 E~l~-g~~~S~kSDIWSLGVILyELLTG~~PF~~~~------------~~ki~~--~~~i~~P-----~~~~p~~~iP~~  260 (932)
T PRK13184        201 ERLL-GVPASESTDIYALGVILYQMLTLSFPYRRKK------------GRKISY--RDVILSP-----IEVAPYREIPPF  260 (932)
T ss_pred             HHhc-CCCCCcHhHHHHHHHHHHHHHHCCCCCCCcc------------hhhhhh--hhhccCh-----hhccccccCCHH
Confidence            9654 4568999999999999999999999985311            100000  0000000     011122356789


Q ss_pred             HHHHHHHhhhcCcCCCCCHHHHHcC
Q 005958          373 GWNLLSLLLATKPSKRISCLDALRH  397 (667)
Q Consensus       373 ~~dLI~~~L~~DP~kRpSa~elL~H  397 (667)
                      +.+++.+||+.||++|++..+.+.+
T Consensus       261 L~~LI~rcL~~DP~kR~ss~eeLl~  285 (932)
T PRK13184        261 LSQIAMKALAVDPAERYSSVQELKQ  285 (932)
T ss_pred             HHHHHHHHccCChhhCcCHHHHHHH
Confidence            9999999999999999987766644

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=100.00  E-value=1.8e-35  Score=313.60  Aligned_cols=265  Identities=16%  Similarity=0.172  Sum_probs=198.7

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCC--CCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCC
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSN--SPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~--~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      ..+..++|.+.+.||+|+||    .||+|++....  .......||+|.++...   ....+.+|+.+++.+.     +|
T Consensus         7 ~~~~~~~~~~~~~lg~G~~g----~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~-----~h   77 (314)
T cd05099           7 WEFPRDRLVLGKPLGEGCFG----QVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIG-----KH   77 (314)
T ss_pred             ccccHHHeeeeeeecCCCcc----cEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhcc-----CC
Confidence            34556899999999999999    99999875321  11245679999987532   2345678999999985     59


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      |||+++++++.     ..+..|+||| |+.+|+|.+++........ ......            .......++...+..
T Consensus        78 ~~iv~~~~~~~-----~~~~~~lv~e-~~~~g~L~~~i~~~~~~~~-~~~~~~------------~~~~~~~l~~~~~~~  138 (314)
T cd05099          78 KNIINLLGVCT-----QEGPLYVIVE-YAAKGNLREFLRARRPPGP-DYTFDI------------TKVPEEQLSFKDLVS  138 (314)
T ss_pred             CCeeeEEEEEc-----cCCceEEEEe-cCCCCcHHHHHHhcCCCcc-cccccc------------cCCcccccCHHHHHH
Confidence            99999999998     6778999999 9999999999987431100 000000            000112344567888


Q ss_pred             HHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCch
Q 005958          236 LMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       236 i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~k  304 (667)
                      ++.||+.||.|||++||+||||||+|||++. ++.+||+|||+++.....           ...|+|||.+. ...++.+
T Consensus       139 ~~~qi~~aL~~lH~~gi~H~dlkp~Nill~~-~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~  216 (314)
T cd05099         139 CAYQVARGMEYLESRRCIHRDLAARNVLVTE-DNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALF-DRVYTHQ  216 (314)
T ss_pred             HHHHHHHHHHHHHHCCeeeccccceeEEEcC-CCcEEEccccccccccccccccccccCCCCccccCHHHHc-cCCcCcc
Confidence            9999999999999999999999999999998 899999999999755321           13699999654 4568999


Q ss_pred             hhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhc
Q 005958          305 FDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLAT  383 (667)
Q Consensus       305 sDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~  383 (667)
                      +|||||||++|+|++ |..||.            +.+...+.+.+..   ..      .......++.++++||.+||..
T Consensus       217 ~DiwslG~~l~el~~~g~~p~~------------~~~~~~~~~~~~~---~~------~~~~~~~~~~~l~~li~~cl~~  275 (314)
T cd05099         217 SDVWSFGILMWEIFTLGGSPYP------------GIPVEELFKLLRE---GH------RMDKPSNCTHELYMLMRECWHA  275 (314)
T ss_pred             chhhHHHHHHHHHHhCCCCCCC------------CCCHHHHHHHHHc---CC------CCCCCCCCCHHHHHHHHHHcCC
Confidence            999999999999999 888874            2233333333221   10      1122346678999999999999


Q ss_pred             CcCCCCCHHHHHc
Q 005958          384 KPSKRISCLDALR  396 (667)
Q Consensus       384 DP~kRpSa~elL~  396 (667)
                      ||++|||+.++++
T Consensus       276 ~p~~Rps~~~ll~  288 (314)
T cd05099         276 VPTQRPTFKQLVE  288 (314)
T ss_pred             CcccCcCHHHHHH
Confidence            9999999999885

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=100.00  E-value=1.1e-35  Score=312.55  Aligned_cols=244  Identities=18%  Similarity=0.242  Sum_probs=196.2

Q ss_pred             EEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcc--hhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEE
Q 005958           89 KILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS--VQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVS  166 (667)
Q Consensus        89 ~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~--~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~  166 (667)
                      +...+||+|+||    .||++.+..     +++.||||++..  ......+.+|+.+++.+      +|+||+++++.+.
T Consensus        23 ~~~~~lg~g~~g----~v~~~~~~~-----~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~   87 (292)
T cd06657          23 DNFIKIGEGSTG----IVCIATVKS-----SGKLVAVKKMDLRKQQRRELLFNEVVIMRDY------QHENVVEMYNSYL   87 (292)
T ss_pred             hhHHHcCCCCCe----EEEEEEEcC-----CCeEEEEEEecccchhHHHHHHHHHHHHHhc------CCcchhheeeEEE
Confidence            334689999999    999999987     799999999864  22344578899999999      4999999999998


Q ss_pred             ecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHH
Q 005958          167 SHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNY  246 (667)
Q Consensus       167 ~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~y  246 (667)
                           ..+..++||| |+++++|.+++...          .+++                    ..++.++.|++.||+|
T Consensus        88 -----~~~~~~lv~e-~~~~~~L~~~~~~~----------~~~~--------------------~~~~~~~~ql~~~l~~  131 (292)
T cd06657          88 -----VGDELWVVME-FLEGGALTDIVTHT----------RMNE--------------------EQIAAVCLAVLKALSV  131 (292)
T ss_pred             -----eCCEEEEEEe-cCCCCcHHHHHhcC----------CCCH--------------------HHHHHHHHHHHHHHHH
Confidence                 7789999999 99999999987642          3443                    4567899999999999


Q ss_pred             HHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHHHHHH
Q 005958          247 LHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKM  317 (667)
Q Consensus       247 LHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGviLyem  317 (667)
                      ||++||+|+||+|+||+++. ++.++|+|||++......         ...|+|||.+ ....++.++|+||+||++|+|
T Consensus       132 lH~~givH~dl~p~Nilv~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~pE~~-~~~~~~~~~Dv~slGvil~el  209 (292)
T cd06657         132 LHAQGVIHRDIKSDSILLTH-DGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELI-SRLPYGPEVDIWSLGIMVIEM  209 (292)
T ss_pred             HHHCCeecCCCCHHHEEECC-CCCEEEcccccceecccccccccccccCccccCHHHh-cCCCCCchhhHHHHHHHHHHH
Confidence            99999999999999999998 889999999988654322         2569999954 455688999999999999999


Q ss_pred             HhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcC
Q 005958          318 VLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRH  397 (667)
Q Consensus       318 ltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~H  397 (667)
                      ++|.+||..            .........+.....       ..+......++++.++|.+||..||.+||++.++|+|
T Consensus       210 ~tg~~p~~~------------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~li~~~l~~~P~~R~~~~~ll~~  270 (292)
T cd06657         210 VDGEPPYFN------------EPPLKAMKMIRDNLP-------PKLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH  270 (292)
T ss_pred             HhCCCCCCC------------CCHHHHHHHHHhhCC-------cccCCcccCCHHHHHHHHHHHhCCcccCcCHHHHhcC
Confidence            999999842            222221122211111       1122334568899999999999999999999999999


Q ss_pred             CCCCCCC
Q 005958          398 PFLCGPR  404 (667)
Q Consensus       398 Pwf~~~~  404 (667)
                      |||....
T Consensus       271 ~~~~~~~  277 (292)
T cd06657         271 PFLAKAG  277 (292)
T ss_pred             hHHhccC
Confidence            9998876

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-36  Score=340.57  Aligned_cols=262  Identities=17%  Similarity=0.197  Sum_probs=215.5

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCC
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      ....+...+.+..+.||+|+||    +||+|+-...........||||.++..   +...+++||+++|..|+      |
T Consensus       479 ~~~~i~r~~i~~~~eLGegaFG----kVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~------H  548 (774)
T KOG1026|consen  479 KVLEIPRSDIVFKEELGEGAFG----KVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQ------H  548 (774)
T ss_pred             ceeEechhheeehhhhcCchhh----hhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhcc------C
Confidence            4456777889999999999999    999999765433346788999999863   34567899999999994      9


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCC-CccccHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGP-AASRQLRLIR  234 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~-~~~~~~~~i~  234 (667)
                      ||||+++|++.     .++-+|+|+| ||..|||.++|+.+.......                ..+.+ ..++...+..
T Consensus       549 ~nIVrLlGVC~-----~~~P~~MvFE-Ym~~GDL~eFLra~sP~a~~~----------------~~g~~~~~~L~~~q~L  606 (774)
T KOG1026|consen  549 PNIVRLLGVCR-----EGDPLCMVFE-YMDHGDLHEFLRARSPKADKL----------------ASGQDTPPPLSTSQFL  606 (774)
T ss_pred             CCeEEEEEEEc-----cCCeeEEEEE-ecccccHHHHHHhhCCccccc----------------cCCCCCCCCCCHHHHH
Confidence            99999999999     8899999999 999999999999865222111                01111 3456678899


Q ss_pred             HHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-----------CCCCCcccccCCCCCCc
Q 005958          235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-----------PNNSSPDSNMDRRQMMI  303 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-----------~~Y~APE~l~~~~~ys~  303 (667)
                      .|+.||+.|+.||-++.+|||||...|+||.+ +..|||+|||+++.....+           ..|||||.++.++ |++
T Consensus       607 ~iA~QIAaGM~YLs~~~FVHRDLATRNCLVge-~l~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~k-FTt  684 (774)
T KOG1026|consen  607 HIATQIAAGMEYLSSHHFVHRDLATRNCLVGE-NLVVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGK-FTT  684 (774)
T ss_pred             HHHHHHHHHHHHHHhCcccccchhhhhceecc-ceEEEecccccchhhhhhhhhcccCCceeeeecCCHHHhhcCc-ccc
Confidence            99999999999999999999999999999999 8999999999999776554           5699999877655 999


Q ss_pred             hhhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhh
Q 005958          304 AFDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLA  382 (667)
Q Consensus       304 ksDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~  382 (667)
                      ++||||+||+|||+++ |+.|+            .|-..++..+.+...         .-++.+.+++.++.+|+..||+
T Consensus       685 eSDVWs~GVvLWEIFsyG~QPy------------~glSn~EVIe~i~~g---------~lL~~Pe~CP~~vY~LM~~CW~  743 (774)
T KOG1026|consen  685 ESDVWSFGVVLWEIFSYGKQPY------------YGLSNQEVIECIRAG---------QLLSCPENCPTEVYSLMLECWN  743 (774)
T ss_pred             hhhhhhhhhhhhhhhccccCcc------------cccchHHHHHHHHcC---------CcccCCCCCCHHHHHHHHHHhh
Confidence            9999999999999998 88886            354555555554321         1245567899999999999999


Q ss_pred             cCcCCCCCHHHHH
Q 005958          383 TKPSKRISCLDAL  395 (667)
Q Consensus       383 ~DP~kRpSa~elL  395 (667)
                      .+|++||++.||-
T Consensus       744 ~~P~~RPsF~eI~  756 (774)
T KOG1026|consen  744 ENPKRRPSFKEIH  756 (774)
T ss_pred             cCcccCCCHHHHH
Confidence            9999999999873

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=100.00  E-value=1.8e-35  Score=301.45  Aligned_cols=245  Identities=18%  Similarity=0.228  Sum_probs=192.2

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh---HHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEec
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA---QRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSH  168 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~---~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~  168 (667)
                      +.||+|+||    .||+|.+....  .++..||+|.+.....   .+.+.+|+++++.++      |+||+++++++.  
T Consensus         1 ~~ig~g~~g----~v~~~~~~~~~--~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~------~~~i~~~~~~~~--   66 (262)
T cd00192           1 KKLGEGAFG----EVYKGKLKGKD--GKTTEVAVKTLKEDASEEERKDFLKEARVMKKLG------HPNVVRLLGVCT--   66 (262)
T ss_pred             CccccCCce----EEEEEEEecCC--CCCceEEeEeeccccchhHHHHHHHHHHHHhhcC------CCChheeeeeec--
Confidence            479999999    99999998621  1388999999986433   456789999999994      999999999998  


Q ss_pred             ccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 005958          169 TTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLH  248 (667)
Q Consensus       169 ~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLH  248 (667)
                         ....+++||| |+++|+|.+++..............++                    ...++.++.|++.||+|||
T Consensus        67 ---~~~~~~lv~e-~~~~~~L~~~l~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~l~~al~~lH  122 (262)
T cd00192          67 ---EEEPLYLVLE-YMEGGDLLDYLRKSRPVFPSPEKSTLS--------------------LKDLLSFAIQIAKGMEYLA  122 (262)
T ss_pred             ---CCCceEEEEE-eccCCcHHHHHhhccccccccccccCC--------------------HHHHHHHHHHHHHHHHHHH
Confidence               6789999999 998889999998742000000001333                    3567889999999999999


Q ss_pred             HCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhhHHHHHHHHHHH
Q 005958          249 SHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKM  317 (667)
Q Consensus       249 s~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksDIWSLGviLyem  317 (667)
                      ++||+|+||||+||+++. ++.+||+|||.+......           ...|+|||.+.. ..++.++|||||||++|+|
T Consensus       123 ~~~i~H~di~p~nili~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~il~~l  200 (262)
T cd00192         123 SKKFVHRDLAARNCLVGE-DLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESLKD-GIFTSKSDVWSFGVLLWEI  200 (262)
T ss_pred             cCCcccCccCcceEEECC-CCcEEEcccccccccccccccccccCCCcCccccCHHHhcc-CCcchhhccHHHHHHHHHH
Confidence            999999999999999998 899999999999866542           257999995544 4689999999999999999


Q ss_pred             Hh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHc
Q 005958          318 VL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALR  396 (667)
Q Consensus       318 lt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~  396 (667)
                      ++ |..||...            ....+.+.+..   .      ........+++++.+++.+||+.||++|||+.|+++
T Consensus       201 ~~~g~~p~~~~------------~~~~~~~~~~~---~------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~  259 (262)
T cd00192         201 FTLGATPYPGL------------SNEEVLEYLRK---G------YRLPKPEYCPDELYELMLSCWQLDPEDRPTFSELVE  259 (262)
T ss_pred             HhcCCCCCCCC------------CHHHHHHHHHc---C------CCCCCCccCChHHHHHHHHHccCCcccCcCHHHHHH
Confidence            99 69998532            22222222221   1      112334556889999999999999999999999987


Q ss_pred             C
Q 005958          397 H  397 (667)
Q Consensus       397 H  397 (667)
                      |
T Consensus       260 ~  260 (262)
T cd00192         260 R  260 (262)
T ss_pred             h
Confidence            5

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=100.00  E-value=5.7e-36  Score=307.18  Aligned_cols=240  Identities=17%  Similarity=0.206  Sum_probs=193.5

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh--HHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA--QRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~--~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ..+|++.++||.|+||    .||+|.+..      ++.+|+|.+.....  ...+.+|+.+++.++      ||||++++
T Consensus         5 ~~~y~~~~~ig~g~~~----~vy~~~~~~------~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~------~~~i~~~~   68 (261)
T cd05148           5 REEFTLERKLGSGYFG----EVWEGLWKN------RVRVAIKILKSDDLLKQQDFQKEVQALKRLR------HKHLISLF   68 (261)
T ss_pred             HHHHHHhhhhccCCCc----cEEEeEecC------CCcEEEEeccccchhhHHHHHHHHHHHhcCC------Ccchhhee
Confidence            3679999999999999    999999984      78899999876432  456788999999994      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     .....++||| |+++|+|.+++....       ...++                    ...+..++.||+.
T Consensus        69 ~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~~-------~~~~~--------------------~~~~~~~~~~i~~  115 (261)
T cd05148          69 AVCS-----VGEPVYIITE-LMEKGSLLAFLRSPE-------GQVLP--------------------VASLIDMACQVAE  115 (261)
T ss_pred             eeEe-----cCCCeEEEEe-ecccCCHHHHHhcCC-------CCCCC--------------------HHHHHHHHHHHHH
Confidence            9998     7788999999 999999999997632       01233                    3567889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC---------CCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG---------PNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~---------~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      ||.|||++||+|+||||+||+++. ++.+||+|||.+.......         ..|+|||.+ ....++.++|||||||+
T Consensus       116 al~~lH~~~i~h~dl~~~nilv~~-~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~PE~~-~~~~~~~~~DiwslG~~  193 (261)
T cd05148         116 GMAYLEEQNSIHRDLAARNILVGE-DLVCKVADFGLARLIKEDVYLSSDKKIPYKWTAPEAA-SHGTFSTKSDVWSFGIL  193 (261)
T ss_pred             HHHHHHHCCeeccccCcceEEEcC-CceEEEccccchhhcCCccccccCCCCceEecCHHHH-ccCCCCchhhHHHHHHH
Confidence            999999999999999999999998 8999999999997654321         459999955 44568999999999999


Q ss_pred             HHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHH
Q 005958          314 MAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCL  392 (667)
Q Consensus       314 Lyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~  392 (667)
                      +|+|++ |+.||...            +.......+.   ...      ..+.....++++.++|.+||+.||++|||+.
T Consensus       194 l~~l~~~g~~p~~~~------------~~~~~~~~~~---~~~------~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~  252 (261)
T cd05148         194 LYEMFTYGQVPYPGM------------NNHEVYDQIT---AGY------RMPCPAKCPQEIYKIMLECWAAEPEDRPSFK  252 (261)
T ss_pred             HHHHHcCCCCCCCcC------------CHHHHHHHHH---hCC------cCCCCCCCCHHHHHHHHHHcCCCchhCcCHH
Confidence            999998 89998522            2222222221   110      1123356788999999999999999999999


Q ss_pred             HHHc
Q 005958          393 DALR  396 (667)
Q Consensus       393 elL~  396 (667)
                      ++++
T Consensus       253 ~l~~  256 (261)
T cd05148         253 ALRE  256 (261)
T ss_pred             HHHH
Confidence            9875

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=100.00  E-value=3.6e-35  Score=308.19  Aligned_cols=263  Identities=13%  Similarity=0.119  Sum_probs=193.7

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCC-----------CCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhh
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDS-----------NSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVR  149 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~-----------~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~  149 (667)
                      ..++|++.+.||+|+||    .||+|.+...           ....+...||+|.+...   .....+.+|+.+++.++ 
T Consensus         3 ~~~~~~~~~~lg~G~~g----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~-   77 (296)
T cd05095           3 PRKRLTFKEKLGEGQFG----EVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLK-   77 (296)
T ss_pred             ChhhceeeeeccCCCCC----eEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCC-
Confidence            34689999999999999    9999975431           01123567999998753   23356789999999995 


Q ss_pred             ccCCCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCcccc
Q 005958          150 RRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQ  229 (667)
Q Consensus       150 ~~~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~  229 (667)
                           |+||+++++++.     ..+..++||| |+.+|+|.+++........       .           .......++
T Consensus        78 -----~~~i~~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~~~~~-------~-----------~~~~~~~~~  128 (296)
T cd05095          78 -----DPNIIRLLAVCI-----TSDPLCMITE-YMENGDLNQFLSRHEPQEA-------A-----------EKADVVTIS  128 (296)
T ss_pred             -----CCCcceEEEEEe-----cCCccEEEEE-eCCCCcHHHHHHhcCcccc-------c-----------ccccccccC
Confidence                 999999999998     7778999999 9999999999987531110       0           001112234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCC
Q 005958          230 LRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDR  298 (667)
Q Consensus       230 ~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~  298 (667)
                      ...+..++.||+.||+|||++||+||||||+|||++. ++.++|+|||++..+...           ...|+|||.... 
T Consensus       129 ~~~~~~~~~~i~~al~~lH~~~i~H~dlkp~Nili~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~-  206 (296)
T cd05095         129 YSTLIFMATQIASGMKYLSSLNFVHRDLATRNCLVGK-NYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILL-  206 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCeecccCChheEEEcC-CCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhc-
Confidence            5678899999999999999999999999999999998 899999999999764322           146999996554 


Q ss_pred             CCCCchhhHHHHHHHHHHHHh--CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHH
Q 005958          299 RQMMIAFDMRCVGFMMAKMVL--RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNL  376 (667)
Q Consensus       299 ~~ys~ksDIWSLGviLyemlt--G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dL  376 (667)
                      ..++.++|||||||++|||++  |..||...            ................  ......+....+++.+.+|
T Consensus       207 ~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l  272 (296)
T cd05095         207 GKFTTASDVWAFGVTLWEILTLCKEQPYSQL------------SDEQVIENTGEFFRDQ--GRQVYLPKPALCPDSLYKL  272 (296)
T ss_pred             CCccchhhhhHHHHHHHHHHHhCCCCCcccc------------ChHHHHHHHHHHHhhc--cccccCCCCCCCCHHHHHH
Confidence            458999999999999999998  66777421            1111111111111000  0011122334567899999


Q ss_pred             HHHhhhcCcCCCCCHHHHHc
Q 005958          377 LSLLLATKPSKRISCLDALR  396 (667)
Q Consensus       377 I~~~L~~DP~kRpSa~elL~  396 (667)
                      +.+||+.||++||++.++++
T Consensus       273 i~~cl~~~p~~Rp~~~~i~~  292 (296)
T cd05095         273 MLSCWRRNAKERPSFQEIHA  292 (296)
T ss_pred             HHHHcCCCcccCCCHHHHHH
Confidence            99999999999999999865

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-36  Score=307.27  Aligned_cols=264  Identities=18%  Similarity=0.274  Sum_probs=217.0

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-----hhHHHHHHHHHHHHHHhhccCCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-----QAQRRGRRAIEVLKKLVRRRLMY  154 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-----~~~~~~~rEi~iL~~L~~~~~~~  154 (667)
                      .+.+.+++|.++++||+|+|.    .|.++++++     |.+.||+|++++.     .+.+-++.|-.+....+     +
T Consensus       244 ~~~l~l~df~ll~vigrgsya----kvl~~~~~~-----t~qiyamkvvkkel~nddedidwvqtek~vfe~as-----n  309 (593)
T KOG0695|consen  244 SQGLGLQDFDLLRVIGRGSYA----KVLLVRLKK-----TDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQAS-----N  309 (593)
T ss_pred             ccccccccceeeeeecCcchh----hhhheehcc-----cceeeehhhHHHHhcCCcccchhHHhhHHHHHhcc-----C
Confidence            455678999999999999999    999999998     8999999999873     22344588999999888     8


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      ||.+|-++.+|+     .+..+++|.| |.+||+|.-.+++++         +|+|+                    +++
T Consensus       310 ~pflvglhscfq-----tesrlffvie-yv~ggdlmfhmqrqr---------klpee--------------------har  354 (593)
T KOG0695|consen  310 NPFLVGLHSCFQ-----TESRLFFVIE-YVNGGDLMFHMQRQR---------KLPEE--------------------HAR  354 (593)
T ss_pred             CCeEEehhhhhc-----ccceEEEEEE-EecCcceeeehhhhh---------cCcHH--------------------Hhh
Confidence            999999999999     8889999999 999999998888766         56664                    568


Q ss_pred             HHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchh
Q 005958          235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAF  305 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ks  305 (667)
                      .|..+|+.||.|||+.|||.||||.+|+|++. .|++||+|+|+++.--.+         .|.|.||| ++.+..|++.+
T Consensus       355 fys~ei~lal~flh~rgiiyrdlkldnvllda-eghikltdygmcke~l~~gd~tstfcgtpnyiape-ilrgeeygfsv  432 (593)
T KOG0695|consen  355 FYSAEICLALNFLHERGIIYRDLKLDNVLLDA-EGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPE-ILRGEEYGFSV  432 (593)
T ss_pred             hhhHHHHHHHHHHhhcCeeeeeccccceEEcc-CCceeecccchhhcCCCCCcccccccCCCcccchh-hhcccccCcee
Confidence            89999999999999999999999999999999 999999999999854322         28999999 55566799999


Q ss_pred             hHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCc
Q 005958          306 DMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       306 DIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      |+|+|||+++||+.|+.||.-.        -..++.....+++..++-..      .+.++...|-.+..+++..|++||
T Consensus       433 dwwalgvlmfemmagrspfdiv--------gm~n~d~ntedylfqvilek------qiriprslsvkas~vlkgflnkdp  498 (593)
T KOG0695|consen  433 DWWALGVLMFEMMAGRSPFDIV--------GMDNPDMNTEDYLFQVILEK------QIRIPRSLSVKASHVLKGFLNKDP  498 (593)
T ss_pred             hHHHHHHHHHHHHcCCCCccee--------cCCCcccchhHHHHHHHhhh------cccccceeehhhHHHHHHhhcCCc
Confidence            9999999999999999999511        11222333444444332221      233455677788999999999999


Q ss_pred             CCCCC------HHHHHcCCCCCCCCCCCC
Q 005958          386 SKRIS------CLDALRHPFLCGPRWRVD  408 (667)
Q Consensus       386 ~kRpS------a~elL~HPwf~~~~~~~~  408 (667)
                      .+|..      ..++..|+||+.++|...
T Consensus       499 ~erlgc~~~~g~~dik~h~ffr~idwd~l  527 (593)
T KOG0695|consen  499 KERLGCRPQTGFSDIKSHAFFRSIDWDLL  527 (593)
T ss_pred             HHhcCCCcccchhhhhcchhhhhCCHHHH
Confidence            99985      579999999999998543

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=100.00  E-value=2.3e-35  Score=315.54  Aligned_cols=267  Identities=16%  Similarity=0.162  Sum_probs=199.7

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCC--CCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNS--PLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMY  154 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~--~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~  154 (667)
                      .+++...+|++++.||+|+||    .||+|++.....  ......||+|.+....   ..+.+.+|+++++++.     +
T Consensus         6 ~~~~~~~~~~i~~~ig~G~~g----~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~-----~   76 (334)
T cd05100           6 KWELSRTRLTLGKPLGEGCFG----QVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIG-----K   76 (334)
T ss_pred             ccccCHhHeeecceeccccCC----cEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhc-----C
Confidence            455556789999999999999    999998754211  1134579999887522   2346789999999995     5


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      ||||+++++++.     ..+.++++|| |+++|+|.+++.+..... +..  .+.          ....+...++...+.
T Consensus        77 h~~iv~~~~~~~-----~~~~~~lv~e-~~~~g~L~~~l~~~~~~~-~~~--~~~----------~~~~~~~~l~~~~~~  137 (334)
T cd05100          77 HKNIINLLGACT-----QDGPLYVLVE-YASKGNLREYLRARRPPG-MDY--SFD----------TCKLPEEQLTFKDLV  137 (334)
T ss_pred             CCCeeeeeEEEc-----cCCceEEEEe-cCCCCcHHHHHHhcCCcc-ccc--ccc----------cccCccccCCHHHHH
Confidence            999999999998     6778999999 999999999998643110 000  000          000112234456788


Q ss_pred             HHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-----------CCCCCcccccCCCCCCc
Q 005958          235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-----------PNNSSPDSNMDRRQMMI  303 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-----------~~Y~APE~l~~~~~ys~  303 (667)
                      .++.||+.||.|||++||+||||||+|||++. ++.+||+|||+++......           ..|+|||.+. ...++.
T Consensus       138 ~~~~qi~~al~~LH~~givH~dlkp~Nill~~-~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~  215 (334)
T cd05100         138 SCAYQVARGMEYLASQKCIHRDLAARNVLVTE-DNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALF-DRVYTH  215 (334)
T ss_pred             HHHHHHHHHHHHHHHCCeeccccccceEEEcC-CCcEEECCcccceecccccccccccCCCcCceEcCHHHhc-cCCcCc
Confidence            89999999999999999999999999999998 8999999999997543211           3599999554 456899


Q ss_pred             hhhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhh
Q 005958          304 AFDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLA  382 (667)
Q Consensus       304 ksDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~  382 (667)
                      ++|||||||++|||++ |.+||.            +.+...+...+.   ...      ........+.++.+||.+||+
T Consensus       216 ~~Di~slG~il~el~~~g~~p~~------------~~~~~~~~~~~~---~~~------~~~~~~~~~~~l~~li~~cl~  274 (334)
T cd05100         216 QSDVWSFGVLLWEIFTLGGSPYP------------GIPVEELFKLLK---EGH------RMDKPANCTHELYMIMRECWH  274 (334)
T ss_pred             hhhhHHHHHHHHHHHhcCCCCCC------------CCCHHHHHHHHH---cCC------CCCCCCCCCHHHHHHHHHHcc
Confidence            9999999999999998 888875            222222222221   111      112234567899999999999


Q ss_pred             cCcCCCCCHHHHHcC
Q 005958          383 TKPSKRISCLDALRH  397 (667)
Q Consensus       383 ~DP~kRpSa~elL~H  397 (667)
                      .+|++|||+.+++++
T Consensus       275 ~~p~~Rps~~ell~~  289 (334)
T cd05100         275 AVPSQRPTFKQLVED  289 (334)
T ss_pred             cChhhCcCHHHHHHH
Confidence            999999999999875

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=100.00  E-value=3.3e-35  Score=311.75  Aligned_cols=247  Identities=20%  Similarity=0.237  Sum_probs=195.3

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-----hhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      .|...++||+|+||    +||+|++..     +++.||+|++...     .....+.+|+++++.++      ||||+++
T Consensus        22 ~~~~~~~lg~g~~g----~v~~~~~~~-----~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~------h~~iv~~   86 (313)
T cd06633          22 IFVGLHEIGHGSFG----AVYFATNSH-----TNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLK------HPNTIEY   86 (313)
T ss_pred             HhhcceeeccCCCe----EEEEEEECC-----CCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCC------CCCCccE
Confidence            37778899999999    999999987     7899999998642     12245678999999994      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     +....|+||| |+.+ +|.+++....        ..+++                    ..+..++.||+
T Consensus        87 ~~~~~-----~~~~~~lv~e-~~~~-~l~~~l~~~~--------~~l~~--------------------~~~~~~~~qi~  131 (313)
T cd06633          87 KGCYL-----KEHTAWLVME-YCLG-SASDLLEVHK--------KPLQE--------------------VEIAAITHGAL  131 (313)
T ss_pred             EEEEE-----eCCEEEEEEe-cCCC-CHHHHHHhcC--------CCCCH--------------------HHHHHHHHHHH
Confidence            99998     7789999999 9976 8988886532        13443                    45677999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----CCCCCCccccc--CCCCCCchhhHHHHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----GPNNSSPDSNM--DRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----~~~Y~APE~l~--~~~~ys~ksDIWSLGviL  314 (667)
                      .||.|||++||+|+||+|+||+++. ++.+||+|||++......     ...|+|||.+.  ....++.++|||||||++
T Consensus       132 ~al~~LH~~gi~H~dl~p~nili~~-~~~~kL~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil  210 (313)
T cd06633         132 QGLAYLHSHNMIHRDIKAGNILLTE-PGQVKLADFGSASKSSPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITC  210 (313)
T ss_pred             HHHHHHHHCCeecCCCChhhEEECC-CCCEEEeecCCCcccCCCCCccccccccChhhccccCCCCCCchhhHHHHHHHH
Confidence            9999999999999999999999998 899999999998654322     25799999764  345688999999999999


Q ss_pred             HHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHH
Q 005958          315 AKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDA  394 (667)
Q Consensus       315 yemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~el  394 (667)
                      |+|++|.+||.....           .......    .....+     ......++..+++||.+||+++|.+||++.++
T Consensus       211 ~el~~g~~p~~~~~~-----------~~~~~~~----~~~~~~-----~~~~~~~~~~l~~li~~~l~~~P~~Rp~~~~~  270 (313)
T cd06633         211 IELAERKPPLFNMNA-----------MSALYHI----AQNDSP-----TLQSNEWTDSFRGFVDYCLQKIPQERPASAEL  270 (313)
T ss_pred             HHHHhCCCCCCCCCh-----------HHHHHHH----HhcCCC-----CCCccccCHHHHHHHHHHccCChhhCcCHHHH
Confidence            999999999852211           1111111    111111     01123456789999999999999999999999


Q ss_pred             HcCCCCCCCC
Q 005958          395 LRHPFLCGPR  404 (667)
Q Consensus       395 L~HPwf~~~~  404 (667)
                      +.||||...+
T Consensus       271 l~~~~~~~~~  280 (313)
T cd06633         271 LRHDFVRRDR  280 (313)
T ss_pred             hcCcccCCCc
Confidence            9999999865

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=100.00  E-value=1.2e-35  Score=305.92  Aligned_cols=246  Identities=16%  Similarity=0.174  Sum_probs=191.8

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-----hhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-----QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-----~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      +++|++.+.||.|+||    .||+|++..     +++.||||.+...     .....+.+|+.+++.+.      ||||+
T Consensus         1 ~~~y~~~~~ig~g~~g----~v~~~~~~~-----~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~------h~~i~   65 (267)
T cd08229           1 LANFRIEKKIGRGQFS----EVYRATCLL-----DGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLN------HPNVI   65 (267)
T ss_pred             CchhhhhhhhcccCCe----EEEEEeecC-----CCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHcc------CCchh
Confidence            3679999999999999    999999987     7899999987642     12345678999999994      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++.     ..+..+++|| |+++++|.+++.....     ....+++                    ..++.++.|
T Consensus        66 ~~~~~~~-----~~~~~~~v~e-~~~~~~L~~~~~~~~~-----~~~~~~~--------------------~~~~~~~~~  114 (267)
T cd08229          66 KYYASFI-----EDNELNIVLE-LADAGDLSRMIKHFKK-----QKRLIPE--------------------KTVWKYFVQ  114 (267)
T ss_pred             hhhheeE-----eCCeEEEEEE-ecCCCCHHHHHHHhhc-----cCCCCCH--------------------HHHHHHHHH
Confidence            9999998     7789999999 9999999999875321     0113343                    457889999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      |+.||.|||++||+|+||||+||+++. ++.++|+|||++.....         +...|+|||.+. ...++.++|||||
T Consensus       115 i~~~l~~LH~~~i~H~dl~p~nili~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~ape~~~-~~~~~~~~Dv~sl  192 (267)
T cd08229         115 LCSALEHMHSRRVMHRDIKPANVFITA-TGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIH-ENGYNFKSDIWSL  192 (267)
T ss_pred             HHHHHHHHHHCCeecCCCCHHHEEEcC-CCCEEECcchhhhccccCCcccccccCCcCccCHHHhc-CCCccchhhHHHH
Confidence            999999999999999999999999998 89999999999875532         225799999554 4558899999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      |+++|+|++|..||...            .. ..............+     .......++++++||.+||+.||++|||
T Consensus       193 G~il~~l~~g~~p~~~~------------~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~li~~~l~~~p~~Rpt  254 (267)
T cd08229         193 GCLLYEMAALQSPFYGD------------KM-NLYSLCKKIEQCDYP-----PLPSDHYSEELRQLVNMCINPDPEKRPD  254 (267)
T ss_pred             HHHHHHHHhCCCCcccc------------cc-hHHHHhhhhhcCCCC-----CCCcccccHHHHHHHHHhcCCCcccCCC
Confidence            99999999999998421            11 011111111111100     0012346789999999999999999999


Q ss_pred             HHHHHc
Q 005958          391 CLDALR  396 (667)
Q Consensus       391 a~elL~  396 (667)
                      +.++++
T Consensus       255 ~~~i~~  260 (267)
T cd08229         255 ITYVYD  260 (267)
T ss_pred             HHHHHH
Confidence            998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=100.00  E-value=2.5e-35  Score=300.56  Aligned_cols=245  Identities=19%  Similarity=0.212  Sum_probs=197.0

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      +|++.+.||.|+||    .||++.+..     +++.+|+|.+...    .......+|+++++.++      |+||++++
T Consensus         1 ~y~~~~~i~~g~~~----~v~~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~------~~~i~~~~   65 (256)
T cd08530           1 DFKVLKKLGKGSYG----SVYKVKRLS-----DNQFYALKEVDLGSMSQKEREDAVNEIRILASVN------HPNIISYK   65 (256)
T ss_pred             CceEeeeecCCCce----eEEEEEECC-----CCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCC------CCCchhhh
Confidence            58999999999999    999999987     7899999998752    22345578999999994      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     .....|+||| |+++++|.+++......     ...+++                    ..+..++.|++.
T Consensus        66 ~~~~-----~~~~~~~v~e-~~~~~~L~~~~~~~~~~-----~~~~~~--------------------~~~~~~~~~l~~  114 (256)
T cd08530          66 EAFL-----DGNKLCIVME-YAPFGDLSKAISKRKKK-----RKLIPE--------------------QEIWRIFIQLLR  114 (256)
T ss_pred             hhhc-----cCCEEEEEeh-hcCCCCHHHHHHHHHhh-----cCCCCH--------------------HHHHHHHHHHHH
Confidence            9998     7789999999 99999999998763200     013333                    457889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-------CCCCCCCcccccCCCCCCchhhHHHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMA  315 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLy  315 (667)
                      ||+|||++|++|+||+|+||+++. ++.+||+|||++.....       +.+.|+|||.+ ....++.++|+||+|+++|
T Consensus       115 al~~lh~~~i~h~~l~~~ni~~~~-~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~Pe~~-~~~~~~~~~D~~slG~~~~  192 (256)
T cd08530         115 GLQALHEQKILHRDLKSANILLVA-NDLVKIGDLGISKVLKKNMAKTQIGTPHYMAPEVW-KGRPYSYKSDIWSLGCLLY  192 (256)
T ss_pred             HHHHHhhCCcccCCCCcceEEEec-CCcEEEeeccchhhhccCCcccccCCccccCHHHH-CCCCCCchhhHHHHHHHHH
Confidence            999999999999999999999998 88999999999876543       23689999965 4556889999999999999


Q ss_pred             HHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHH
Q 005958          316 KMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDAL  395 (667)
Q Consensus       316 emltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL  395 (667)
                      +|++|+.||...            +...+...+   .....      .+.....+.+++++|.+||..+|++||++.+++
T Consensus       193 ~l~~g~~p~~~~------------~~~~~~~~~---~~~~~------~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l  251 (256)
T cd08530         193 EMATFAPPFEAR------------SMQDLRYKV---QRGKY------PPIPPIYSQDLQNFIRSMLQVKPKLRPNCDKIL  251 (256)
T ss_pred             HHHhCCCCCCCC------------CHHHHHHHH---hcCCC------CCCchhhCHHHHHHHHHHcCCCcccCCCHHHHh
Confidence            999999998521            222222221   11111      112235678999999999999999999999999


Q ss_pred             cCCCC
Q 005958          396 RHPFL  400 (667)
Q Consensus       396 ~HPwf  400 (667)
                      +||++
T Consensus       252 ~~p~~  256 (256)
T cd08530         252 ASPAV  256 (256)
T ss_pred             cCCCC
Confidence            99985

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=100.00  E-value=8.7e-36  Score=303.27  Aligned_cols=223  Identities=16%  Similarity=0.220  Sum_probs=178.9

Q ss_pred             CCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEecccCCCCeE
Q 005958           97 GLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLF  176 (667)
Q Consensus        97 G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~~~~~~~~  176 (667)
                      |.||    .||+|++..     +++.||+|.+.....   ..+|...+...      .||||+++++++.     .....
T Consensus         4 g~~~----~v~~~~~~~-----~~~~~~~K~i~~~~~---~~~~~~~~~~~------~~~~i~~~~~~~~-----~~~~~   60 (237)
T cd05576           4 GVID----KVLLVMDTR-----TQQTFILKGLRKSSE---YSRERLTIIPH------CVPNMVCLHKYIV-----SEDSV   60 (237)
T ss_pred             cccc----eEEEEEEcc-----CCcEEEEEeecchhh---hhhHHHHHHhc------CCCceeehhhhee-----cCCeE
Confidence            8888    999999998     899999999976432   23444444444      4999999999998     77899


Q ss_pred             EEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHCCCcccC
Q 005958          177 TLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTE  256 (667)
Q Consensus       177 ~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrD  256 (667)
                      ++||| |+++|+|.+++.+..         .+++                    ..+..++.|++.||+|||++||+|||
T Consensus        61 ~lv~e-~~~~~~L~~~l~~~~---------~l~~--------------------~~~~~~~~ql~~~l~~lH~~~i~H~d  110 (237)
T cd05576          61 FLVLQ-HAEGGKLWSHISKFL---------NIPE--------------------ECVKRWAAEMVVALDALHREGIVCRD  110 (237)
T ss_pred             EEEEe-cCCCCCHHHHHHHhc---------CCCH--------------------HHHHHHHHHHHHHHHHHHhCCeeccC
Confidence            99999 999999999997643         3443                    45788999999999999999999999


Q ss_pred             CCCCcEEEcCCCCeEEEeeecccccccCC------CCCCCCcccccCCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhh
Q 005958          257 LRLENVHISPVDRHIKVGILGNAADFYED------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTK  330 (667)
Q Consensus       257 LKPeNILl~~~~~~vKL~DFGlA~~~~~~------~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~  330 (667)
                      |||+||+++. ++.++|+|||.+......      ...|+|||.+ ....++.++||||+||++|||++|+.||....  
T Consensus       111 lkp~Nil~~~-~~~~~l~df~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~DvwslG~il~el~~g~~~~~~~~--  186 (237)
T cd05576         111 LNPNNILLDD-RGHIQLTYFSRWSEVEDSCDGEAVENMYCAPEVG-GISEETEACDWWSLGAILFELLTGKTLVECHP--  186 (237)
T ss_pred             CCHHHEEEcC-CCCEEEecccchhccccccccCCcCccccCCccc-CCCCCCchhhHHHHHHHHHHHHHCcchhhcCc--
Confidence            9999999998 889999999987655432      2569999954 45568999999999999999999998763110  


Q ss_pred             hhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH-----HHHHcCCCC
Q 005958          331 FKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC-----LDALRHPFL  400 (667)
Q Consensus       331 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa-----~elL~HPwf  400 (667)
                                 ...        .     ..........+++++++||.+||+.||++||++     +++++||||
T Consensus       187 -----------~~~--------~-----~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~h~~~  237 (237)
T cd05576         187 -----------SGI--------N-----THTTLNIPEWVSEEARSLLQQLLQFNPTERLGAGVAGVEDIKSHPFF  237 (237)
T ss_pred             -----------hhc--------c-----cccccCCcccCCHHHHHHHHHHccCCHHHhcCCCccchHHHHcCCCC
Confidence                       000        0     000112334578899999999999999999986     999999998

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=100.00  E-value=2.6e-35  Score=304.16  Aligned_cols=243  Identities=16%  Similarity=0.158  Sum_probs=191.2

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      .++|++.+.||+|+||    .||+|.+...+.  .+..+|+|.++..   ...+.+.+|+.+++.++      ||||+++
T Consensus         3 ~~~~~~~~~lg~g~~g----~v~~~~~~~~~~--~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~~   70 (267)
T cd05066           3 ASCIKIEKVIGAGEFG----EVCSGRLKLPGK--REIPVAIKTLKAGYTEKQRRDFLSEASIMGQFD------HPNIIHL   70 (267)
T ss_pred             HHHeEeeeeecccCCC----ceEEEEEecCCC--CceEEEEEECCCCCCHHHHHHHHHHHHHHHhCC------CCCcceE
Confidence            4689999999999999    999999875210  2447999998652   23346788999999994      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     ..+..|+||| |+++|+|.+++....        ..+++                    ..+..++.|++
T Consensus        71 ~~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~~--------~~~~~--------------------~~~~~i~~~i~  116 (267)
T cd05066          71 EGVVT-----KSKPVMIVTE-YMENGSLDAFLRKHD--------GQFTV--------------------IQLVGMLRGIA  116 (267)
T ss_pred             EEEEe-----cCCccEEEEE-cCCCCCHHHHHHhcC--------CCCCH--------------------HHHHHHHHHHH
Confidence            99998     7788999999 999999999997642        12333                    45778999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC------------CCCCCcccccCCCCCCchhhHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG------------PNNSSPDSNMDRRQMMIAFDMRC  309 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~------------~~Y~APE~l~~~~~ys~ksDIWS  309 (667)
                      .||.|||++||+||||||+|||++. ++.++|+|||++.......            ..|+|||.+. ...++.++|+||
T Consensus       117 ~~l~~lH~~~i~h~dlkp~nili~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~-~~~~~~~~Dv~s  194 (267)
T cd05066         117 SGMKYLSDMGYVHRDLAARNILVNS-NLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIA-YRKFTSASDVWS  194 (267)
T ss_pred             HHHHHHHHCCEeehhhchhcEEECC-CCeEEeCCCCcccccccccceeeecCCCccceeecCHhHhc-cCccCchhhhHH
Confidence            9999999999999999999999998 8999999999997654321            3599999654 456899999999


Q ss_pred             HHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCC
Q 005958          310 VGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  388 (667)
Q Consensus       310 LGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kR  388 (667)
                      |||++|||++ |..||.+.            ........+....         ..+....+++++.+++.+||+.+|++|
T Consensus       195 lG~~l~ell~~g~~p~~~~------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~li~~~l~~~p~~R  253 (267)
T cd05066         195 YGIVMWEVMSYGERPYWEM------------SNQDVIKAIEEGY---------RLPAPMDCPAALHQLMLDCWQKDRNER  253 (267)
T ss_pred             HHHHHHHHhcCCCCCcccC------------CHHHHHHHHhCCC---------cCCCCCCCCHHHHHHHHHHcccCchhC
Confidence            9999999886 99998522            1111222211110         112234567899999999999999999


Q ss_pred             CCHHHHHc
Q 005958          389 ISCLDALR  396 (667)
Q Consensus       389 pSa~elL~  396 (667)
                      |++.++++
T Consensus       254 p~~~~i~~  261 (267)
T cd05066         254 PKFEQIVS  261 (267)
T ss_pred             CCHHHHHH
Confidence            99999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=100.00  E-value=3.1e-35  Score=304.34  Aligned_cols=256  Identities=17%  Similarity=0.209  Sum_probs=196.6

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh---HHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA---QRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~---~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ..++|++.+.||.|+||    .||+|+.+........+.||+|.+.....   ...+.+|++++++++      ||||++
T Consensus         3 ~~~~~~~~~~lg~g~~g----~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~------h~~iv~   72 (275)
T cd05046           3 PRSNLQEITTLGRGEFG----EVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLS------HKNVVR   72 (275)
T ss_pred             ChHhceeeeeeccccee----EEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcC------Ccceee
Confidence            34789999999999999    99999987654444678899999875332   356789999999995      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     +.+..|+||| |+++|+|.+++.........                    .....++...+..++.||
T Consensus        73 ~~~~~~-----~~~~~~lv~e-~~~~~~L~~~i~~~~~~~~~--------------------~~~~~l~~~~~~~~~~~l  126 (275)
T cd05046          73 LLGLCR-----EAEPHYMILE-YTDLGDLKQFLRATKSKDEK--------------------LKPPPLSTKQKVALCTQI  126 (275)
T ss_pred             eEEEEC-----CCCcceEEEE-ecCCCcHHHHHHhccccccc--------------------ccccCCCHHHHHHHHHHH
Confidence            999998     7788999999 99999999999764311000                    011123346788899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC----------CCCCCCcccccCCCCCCchhhHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED----------GPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~----------~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      +.||+|||++||+||||||+||+++. ++.++|+|||++......          ...|+|||.+. ...++.++|||||
T Consensus       127 ~~~l~~LH~~~i~H~dlkp~Nili~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~-~~~~~~~~Di~sl  204 (275)
T cd05046         127 ALGMDHLSNARFVHRDLAARNCLVSS-QREVKVSLLSLSKDVYNSEYYKLRNALIPLRWLAPEAVQ-EDDFSTKSDVWSF  204 (275)
T ss_pred             HHHHHHhhhcCcccCcCccceEEEeC-CCcEEEcccccccccCcccccccCCceeEEeecChhhhc-cCCCCchhhHHHH
Confidence            99999999999999999999999998 899999999998644321          13599999554 4457899999999


Q ss_pred             HHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          311 GFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       311 GviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      ||++|+|++ |.+||...            .......   .......     .......++..+.++|.+||+.||++||
T Consensus       205 G~~l~~l~~~~~~p~~~~------------~~~~~~~---~~~~~~~-----~~~~~~~~~~~l~~~i~~~l~~~p~~Rp  264 (275)
T cd05046         205 GVLMWEVFTQGELPFYGL------------SDEEVLN---RLQAGKL-----ELPVPEGCPSRLYKLMTRCWAVNPKDRP  264 (275)
T ss_pred             HHHHHHHHhCCCCCcccc------------chHHHHH---HHHcCCc-----CCCCCCCCCHHHHHHHHHHcCCCcccCC
Confidence            999999998 78887421            1111111   1111111     1122345678999999999999999999


Q ss_pred             CHHHHHcC
Q 005958          390 SCLDALRH  397 (667)
Q Consensus       390 Sa~elL~H  397 (667)
                      |+.|++++
T Consensus       265 ~~~~~l~~  272 (275)
T cd05046         265 SFSELVSA  272 (275)
T ss_pred             CHHHHHHH
Confidence            99999864

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=100.00  E-value=3.9e-35  Score=301.63  Aligned_cols=240  Identities=17%  Similarity=0.185  Sum_probs=188.4

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ..++|++.+.||+|+||    .||+|.+..      +..+|+|.+.... ..+.+.+|+.+++.++      ||||++++
T Consensus         4 ~~~~~~~~~~ig~g~~~----~v~~~~~~~------~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~------h~~i~~~~   67 (260)
T cd05069           4 PRESLRLDVKLGQGCFG----EVWMGTWNG------TTKVAIKTLKPGTMMPEAFLQEAQIMKKLR------HDKLVPLY   67 (260)
T ss_pred             ChHHeeeeeeecCcCCC----eEEEEEEcC------CceEEEEEcccCCccHHHHHHHHHHHHhCC------CCCeeeEE
Confidence            45789999999999999    999998875      4569999887532 3355788999999995      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.      .+..++||| |+.+|+|.+++.....       ..++                    ...+..++.||+.
T Consensus        68 ~~~~------~~~~~~v~e-~~~~~~L~~~~~~~~~-------~~~~--------------------~~~~~~~~~~l~~  113 (260)
T cd05069          68 AVVS------EEPIYIVTE-FMGKGSLLDFLKEGDG-------KYLK--------------------LPQLVDMAAQIAD  113 (260)
T ss_pred             EEEc------CCCcEEEEE-cCCCCCHHHHHhhCCC-------CCCC--------------------HHHHHHHHHHHHH
Confidence            8875      345799999 9999999999976320       1233                    3457789999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC----------CCCCCcccccCCCCCCchhhHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG----------PNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~----------~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      ||.|||+.||+|+||||+||+++. ++.++|+|||++.......          ..|+|||.. ....++.++|||||||
T Consensus       114 al~~lH~~~i~H~dl~~~Nill~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~-~~~~~~~~~Di~slG~  191 (260)
T cd05069         114 GMAYIERMNYIHRDLRAANILVGD-NLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAA-LYGRFTIKSDVWSFGI  191 (260)
T ss_pred             HHHHHHhCCEeecccCcceEEEcC-CCeEEECCCccceEccCCcccccCCCccchhhCCHHHh-ccCCcChHHHHHHHHH
Confidence            999999999999999999999998 8999999999997653321          359999954 4456899999999999


Q ss_pred             HHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH
Q 005958          313 MMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC  391 (667)
Q Consensus       313 iLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa  391 (667)
                      ++|||++ |.+||.+.            ........+.   ...      ..+.....+..+.+|+.+||+.||++||++
T Consensus       192 ~l~el~t~g~~p~~~~------------~~~~~~~~~~---~~~------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~  250 (260)
T cd05069         192 LLTELVTKGRVPYPGM------------VNREVLEQVE---RGY------RMPCPQGCPESLHELMKLCWKKDPDERPTF  250 (260)
T ss_pred             HHHHHHhCCCCCCCCC------------CHHHHHHHHH---cCC------CCCCCcccCHHHHHHHHHHccCCcccCcCH
Confidence            9999999 89998521            2222222211   111      012234567899999999999999999999


Q ss_pred             HHHHc
Q 005958          392 LDALR  396 (667)
Q Consensus       392 ~elL~  396 (667)
                      +++++
T Consensus       251 ~~i~~  255 (260)
T cd05069         251 EYIQS  255 (260)
T ss_pred             HHHHH
Confidence            99875

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=100.00  E-value=3.2e-35  Score=306.84  Aligned_cols=265  Identities=16%  Similarity=0.157  Sum_probs=197.0

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ..++|++.+.||+|+||    .||+|.+.......++..||+|++....   ....+.+|+.+++++      +||||++
T Consensus         3 ~~~~~~~~~~lg~g~~g----~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l------~h~~iv~   72 (288)
T cd05050           3 PRNNIEYVRDIGQGAFG----RVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEF------DHPNIVK   72 (288)
T ss_pred             ChHhceecccccccccc----cEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhc------CCCchhe
Confidence            45789999999999999    9999997642222367899999987532   235578899999999      4999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCC--CCCCCCCccccHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGD--DSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~--~~~~~~~~~~~~~~i~~i~~  238 (667)
                      +++++.     .....++||| |+++|+|.+++.......         +.....-..  .........++...+..++.
T Consensus        73 ~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (288)
T cd05050          73 LLGVCA-----VGKPMCLLFE-YMAYGDLNEFLRHRSPRA---------QCSLSHSTSSARKCGLNPLPLSCTEQLCIAK  137 (288)
T ss_pred             EEEEEc-----CCCccEEEEe-cCCCCCHHHHHHHcCccc---------cccccccccccccccccccccCHHHHHHHHH
Confidence            999998     6778999999 999999999998643110         000000000  00011123355678899999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhhH
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksDI  307 (667)
                      ||+.||.|||++|++||||||+||+++. ++.++|+|||++......           ...|+|||.+. ...++.++||
T Consensus       138 ~i~~aL~~lH~~~i~H~dl~p~nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Dv  215 (288)
T cd05050         138 QVAAGMAYLSERKFVHRDLATRNCLVGE-NMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIF-YNRYTTESDV  215 (288)
T ss_pred             HHHHHHHHHHhCCeecccccHhheEecC-CCceEECccccceecccCccccccCCCccChhhcCHHHHh-cCCCCchhHH
Confidence            9999999999999999999999999998 899999999998754321           13599999554 4568999999


Q ss_pred             HHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          308 RCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       308 WSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      |||||++|||++ |..||.            +....+....+.   ....      .......+.++.+||.+||+.||+
T Consensus       216 ~slG~il~el~~~~~~p~~------------~~~~~~~~~~~~---~~~~------~~~~~~~~~~l~~li~~~l~~~p~  274 (288)
T cd05050         216 WAYGVVLWEIFSYGMQPYY------------GMAHEEVIYYVR---DGNV------LSCPDNCPLELYNLMRLCWSKLPS  274 (288)
T ss_pred             HHHHHHHHHHHhCCCCCCC------------CCCHHHHHHHHh---cCCC------CCCCCCCCHHHHHHHHHHcccCcc
Confidence            999999999997 877873            222222222221   1111      112345678999999999999999


Q ss_pred             CCCCHHHHHc
Q 005958          387 KRISCLDALR  396 (667)
Q Consensus       387 kRpSa~elL~  396 (667)
                      +|||+.|+++
T Consensus       275 ~Rpt~~el~~  284 (288)
T cd05050         275 DRPSFASINR  284 (288)
T ss_pred             cCCCHHHHHH
Confidence            9999999875

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-37  Score=329.53  Aligned_cols=258  Identities=17%  Similarity=0.236  Sum_probs=218.7

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-----hhHHHHHHHHHHHHHHhhccCCCC
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-----QAQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-----~~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      ....+.+++++..||-|+||    .|-++....     ....+|+|++++.     ...+.+..|-.||..++      .
T Consensus       415 a~v~l~dl~~iaTLGvGgFG----RVELV~~~~-----~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~------s  479 (732)
T KOG0614|consen  415 AQVKLSDLKRIATLGVGGFG----RVELVKVNS-----QKATFALKILKKKHIVDTKQQEHVFSERNIMMECR------S  479 (732)
T ss_pred             cccchhhhhhhhhcccCccc----eEEEEEecc-----cchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcC------c
Confidence            34567899999999999999    999998876     3446999999862     34567789999999995      9


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      |+||++|..|.     +..++|++|| .|=||.|+..++.++         .|++.                    ..++
T Consensus       480 ~fIvrLYrTfr-----d~kyvYmLmE-aClGGElWTiLrdRg---------~Fdd~--------------------tarF  524 (732)
T KOG0614|consen  480 DFIVRLYRTFR-----DSKYVYMLME-ACLGGELWTILRDRG---------SFDDY--------------------TARF  524 (732)
T ss_pred             hHHHHHHHHhc-----cchhhhhhHH-hhcCchhhhhhhhcC---------Ccccc--------------------hhhh
Confidence            99999999999     8899999999 999999999999987         56653                    4588


Q ss_pred             HHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC--------CCCCCcccccCCCCCCchhhH
Q 005958          236 LMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG--------PNNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       236 i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~--------~~Y~APE~l~~~~~ys~ksDI  307 (667)
                      |+..+++|++|||++|||.|||||+|++++. +|-+||.|||+|+.+..+.        |.|.|||++++.+ .+.++|.
T Consensus       525 ~~acv~EAfeYLH~k~iIYRDLKPENllLd~-~Gy~KLVDFGFAKki~~g~KTwTFcGTpEYVAPEIILnKG-HD~avDy  602 (732)
T KOG0614|consen  525 YVACVLEAFEYLHRKGIIYRDLKPENLLLDN-RGYLKLVDFGFAKKIGSGRKTWTFCGTPEYVAPEIILNKG-HDRAVDY  602 (732)
T ss_pred             hHHHHHHHHHHHHhcCceeccCChhheeecc-CCceEEeehhhHHHhccCCceeeecCCcccccchhhhccC-cchhhHH
Confidence            9999999999999999999999999999999 9999999999999888765        8999999777665 7999999


Q ss_pred             HHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          308 RCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       308 WSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      ||||+++|||++|.|||.            |.++....+.+.+.+.        .+.++..+...+.+||+++...+|.+
T Consensus       603 WaLGIli~ELL~G~pPFs------------~~dpmktYn~ILkGid--------~i~~Pr~I~k~a~~Lik~LCr~~P~E  662 (732)
T KOG0614|consen  603 WALGILIYELLTGSPPFS------------GVDPMKTYNLILKGID--------KIEFPRRITKTATDLIKKLCRDNPTE  662 (732)
T ss_pred             HHHHHHHHHHHcCCCCCC------------CCchHHHHHHHHhhhh--------hhhcccccchhHHHHHHHHHhcCcHh
Confidence            999999999999999996            4444444444433222        23344667789999999999999999


Q ss_pred             CCC-----HHHHHcCCCCCCCCCCCCCc
Q 005958          388 RIS-----CLDALRHPFLCGPRWRVDPS  410 (667)
Q Consensus       388 RpS-----a~elL~HPwf~~~~~~~~~~  410 (667)
                      |..     +.+|.+|.||.+.+|.-...
T Consensus       663 RLG~~~~gI~DIkkH~Wf~gfdweglr~  690 (732)
T KOG0614|consen  663 RLGYQKGGINDIKKHRWFEGFDWEGLRS  690 (732)
T ss_pred             hhccccCChHHHHhhhhhhcCChhhhhh
Confidence            996     79999999999999865443

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=1.8e-35  Score=308.32  Aligned_cols=259  Identities=17%  Similarity=0.208  Sum_probs=192.3

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ..|++++.||+|+||    .||+|..... ...++..||+|.++..   .....+.+|+++++.+.      ||||++++
T Consensus         4 ~~~~~~~~lg~g~~g----~v~~~~~~~~-~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~~~   72 (284)
T cd05079           4 RFLKRIRDLGEGHFG----KVELCRYDPE-GDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLY------HENIVKYK   72 (284)
T ss_pred             hhhhhceecCCCCce----eEEEEEEccC-CCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCC------CCCeeeee
Confidence            457899999999999    9999986421 1226889999998743   22345789999999994      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++...   +....++||| |+++++|.+++.+..        ..+++                    ..+..++.||+.
T Consensus        73 ~~~~~~---~~~~~~lv~e-~~~g~~L~~~l~~~~--------~~~~~--------------------~~~~~i~~~i~~  120 (284)
T cd05079          73 GICTED---GGNGIKLIME-FLPSGSLKEYLPRNK--------NKINL--------------------KQQLKYAVQICK  120 (284)
T ss_pred             eEEecC---CCCceEEEEE-ccCCCCHHHHHHhcc--------CCCCH--------------------HHHHHHHHHHHH
Confidence            998732   3467899999 999999999997542        12333                    456789999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC------------CCCCCCcccccCCCCCCchhhHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED------------GPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------------~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      ||+|||++||+||||||+||+++. ++.+||+|||++..+...            ...|+|||.+.+ ..++.++|||||
T Consensus       121 aL~~lH~~gi~H~dlkp~Nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~-~~~~~~~Di~sl  198 (284)
T cd05079         121 GMDYLGSRQYVHRDLAARNVLVES-EHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECLIQ-SKFYIASDVWSF  198 (284)
T ss_pred             HHHHHHHCCeeecccchheEEEcC-CCCEEECCCccccccccCccceeecCCCCCCccccCHHHhcc-CCCCccccchhh
Confidence            999999999999999999999998 899999999999755332            135999996544 468899999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCCh--hHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCC
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDP--SCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  388 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kR  388 (667)
                      ||++|||+++..|+......+.  ...+...  ........ .....     ...+....++.++.+||.+||+.||++|
T Consensus       199 G~il~ellt~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~li~~~l~~~p~~R  270 (284)
T cd05079         199 GVTLYELLTYCDSESSPMTLFL--KMIGPTHGQMTVTRLVR-VLEEG-----KRLPRPPNCPEEVYQLMRKCWEFQPSKR  270 (284)
T ss_pred             hhhhhhhhcCCCCCccccchhh--hhcccccccccHHHHHH-HHHcC-----ccCCCCCCCCHHHHHHHHHHccCCcccC
Confidence            9999999998876532111110  0111111  01111111 11111     1122345678999999999999999999


Q ss_pred             CCHHHHHcC
Q 005958          389 ISCLDALRH  397 (667)
Q Consensus       389 pSa~elL~H  397 (667)
                      ||+.+++++
T Consensus       271 pt~~~il~~  279 (284)
T cd05079         271 TTFQNLIEG  279 (284)
T ss_pred             cCHHHHHHH
Confidence            999999864

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=100.00  E-value=4.2e-35  Score=302.21  Aligned_cols=244  Identities=15%  Similarity=0.185  Sum_probs=191.6

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ..++|+..+.||+|+||    .||+|.+...+.  ....+|+|.+....   ..+.+.+|+++++++.      ||||++
T Consensus         3 ~~~~~~~~~~lg~g~~g----~vy~~~~~~~~~--~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~   70 (268)
T cd05063           3 HPSHITKQKVIGAGEFG----EVFRGILKMPGR--KEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFS------HHNIIR   70 (268)
T ss_pred             ChHHceEeeEecCCCCc----cEEEEEEecCCC--CceEEEEEeccccCCHHHHHHHHHHHHHHhcCC------CCCeeE
Confidence            44689999999999999    999999876211  23479999987532   2345688999999994      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     ..+..++||| |+++++|.+++..+.        ..+++                    ..+..++.|+
T Consensus        71 ~~~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~~--------~~~~~--------------------~~~~~~~~~l  116 (268)
T cd05063          71 LEGVVT-----KFKPAMIITE-YMENGALDKYLRDHD--------GEFSS--------------------YQLVGMLRGI  116 (268)
T ss_pred             EEEEEc-----cCCCcEEEEE-cCCCCCHHHHHHhcC--------CCCCH--------------------HHHHHHHHHH
Confidence            999998     7788999999 999999999997642        13443                    4567799999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC------------CCCCCcccccCCCCCCchhhHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG------------PNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~------------~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      +.||+|||+.||+||||||+||+++. ++.+||+|||++.......            ..|+|||.+. ...++.++|||
T Consensus       117 ~~al~~lH~~~i~H~dlkp~Nili~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~-~~~~~~~~Dv~  194 (268)
T cd05063         117 AAGMKYLSDMNYVHRDLAARNILVNS-NLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPEAIA-YRKFTSASDVW  194 (268)
T ss_pred             HHHHHHHHHCCeeccccchhhEEEcC-CCcEEECCCccceecccccccceeccCCCcCceecCHHHhh-cCCcChHhHHH
Confidence            99999999999999999999999998 8999999999997554321            2599999654 45689999999


Q ss_pred             HHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          309 CVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       309 SLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      ||||++|||++ |..||...            ....+...+....         ..+.....+.++++|+.+||+.||++
T Consensus       195 slG~il~ell~~g~~p~~~~------------~~~~~~~~i~~~~---------~~~~~~~~~~~~~~li~~c~~~~p~~  253 (268)
T cd05063         195 SFGIVMWEVMSFGERPYWDM------------SNHEVMKAINDGF---------RLPAPMDCPSAVYQLMLQCWQQDRAR  253 (268)
T ss_pred             HHHHHHHHHHhCCCCCCCcC------------CHHHHHHHHhcCC---------CCCCCCCCCHHHHHHHHHHcCCCccc
Confidence            99999999997 99998521            1222222221110         11223356789999999999999999


Q ss_pred             CCCHHHHHc
Q 005958          388 RISCLDALR  396 (667)
Q Consensus       388 RpSa~elL~  396 (667)
                      ||++.++++
T Consensus       254 Rp~~~~i~~  262 (268)
T cd05063         254 RPRFVDIVN  262 (268)
T ss_pred             CcCHHHHHH
Confidence            999999985

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=100.00  E-value=3.9e-35  Score=303.65  Aligned_cols=249  Identities=17%  Similarity=0.142  Sum_probs=187.4

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCc--EEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEE
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNT--KVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVS  166 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~--~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~  166 (667)
                      +.||+|+||    .||+|++..     ++.  .+|+|.++..   ...+.+.+|++++.++.     .||||+++++++.
T Consensus         1 ~~lg~g~~g----~v~~~~~~~-----~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~~iv~~~~~~~   66 (270)
T cd05047           1 DVIGEGNFG----QVLKARIKK-----DGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLG-----HHPNIINLLGACE   66 (270)
T ss_pred             CcCCCCCCc----eEEEEEEcC-----CCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhc-----cCCCeeeEEEEEe
Confidence            368999999    999999986     444  5788988742   23356788999999996     5999999999998


Q ss_pred             ecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHH
Q 005958          167 SHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNY  246 (667)
Q Consensus       167 ~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~y  246 (667)
                           ..+..|+||| |+.+|+|.+++.......         +..+..    ...+....++...++.++.|++.||+|
T Consensus        67 -----~~~~~~lv~e-~~~~~~L~~~i~~~~~~~---------~~~~~~----~~~~~~~~l~~~~~~~~~~~i~~al~~  127 (270)
T cd05047          67 -----HRGYLYLAIE-YAPHGNLLDFLRKSRVLE---------TDPAFA----IANSTASTLSSQQLLHFAADVARGMDY  127 (270)
T ss_pred             -----cCCCceEEEE-eCCCCcHHHHHHhccccc---------cccccc----cccCCcCCCCHHHHHHHHHHHHHHHHH
Confidence                 6778999999 999999999998754111         000000    001122234567889999999999999


Q ss_pred             HHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC--------CCCCCCCcccccCCCCCCchhhHHHHHHHHHHHH
Q 005958          247 LHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE--------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMV  318 (667)
Q Consensus       247 LHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~--------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyeml  318 (667)
                      ||++||+||||||+|||++. ++.+||+|||++.....        ....|+|||++ ....++.++|||||||++|||+
T Consensus       128 lH~~~i~H~dikp~nili~~-~~~~kl~dfgl~~~~~~~~~~~~~~~~~~y~apE~~-~~~~~~~~~Di~slG~il~el~  205 (270)
T cd05047         128 LSQKQFIHRDLAARNILVGE-NYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESL-NYSVYTTNSDVWSYGVLLWEIV  205 (270)
T ss_pred             HHHCCEeecccccceEEEcC-CCeEEECCCCCccccchhhhccCCCCccccCChHHH-ccCCCCchhhHHHHHHHHHHHH
Confidence            99999999999999999998 89999999999853221        11359999955 4556899999999999999999


Q ss_pred             h-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHc
Q 005958          319 L-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALR  396 (667)
Q Consensus       319 t-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~  396 (667)
                      + |.+||...            +.......   .....      ........+.++.+|+.+||..||.+|||+.++++
T Consensus       206 ~~g~~pf~~~------------~~~~~~~~---~~~~~------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  263 (270)
T cd05047         206 SLGGTPYCGM------------TCAELYEK---LPQGY------RLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILV  263 (270)
T ss_pred             cCCCCCcccc------------CHHHHHHH---HhCCC------CCCCCCcCCHHHHHHHHHHcccChhhCCCHHHHHH
Confidence            7 99998521            12111111   11110      11223356789999999999999999999999985

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=100.00  E-value=3.6e-35  Score=303.15  Aligned_cols=244  Identities=16%  Similarity=0.140  Sum_probs=192.1

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ...+|++.+.||+|+||    .||+|.+...+.  .+..||||.+...   .....+.+|+.+++.+.      ||||++
T Consensus         2 ~~~~~~~~~~lg~g~~g----~vy~~~~~~~~~--~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~------h~ni~~   69 (269)
T cd05065           2 DVSCVKIEEVIGAGEFG----EVCRGRLKLPGK--REIFVAIKTLKSGYTEKQRRDFLSEASIMGQFD------HPNIIH   69 (269)
T ss_pred             ChHHeEEEeEecCCCCC----eEEEEEEecCCC--CceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCC------CcCcce
Confidence            34679999999999999    999999886211  2346999998753   23356788999999994      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     .+...++||| |+++|+|.+++....        ..+++                    ..++.++.|+
T Consensus        70 ~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~--------~~~~~--------------------~~~~~i~~~l  115 (269)
T cd05065          70 LEGVVT-----KSRPVMIITE-FMENGALDSFLRQND--------GQFTV--------------------IQLVGMLRGI  115 (269)
T ss_pred             EEEEEC-----CCCceEEEEe-cCCCCcHHHHHhhCC--------CCCCH--------------------HHHHHHHHHH
Confidence            999998     7788999999 999999999997642        12333                    4578899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC--------------CCCCCcccccCCCCCCchhh
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG--------------PNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~--------------~~Y~APE~l~~~~~ys~ksD  306 (667)
                      +.||+|||++|++|+||||+||+++. ++.+||+|||++.......              ..|+|||.+ ....++.++|
T Consensus       116 ~~al~~lH~~g~~H~dl~p~nili~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~-~~~~~~~~~D  193 (269)
T cd05065         116 AAGMKYLSEMNYVHRDLAARNILVNS-NLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAI-AYRKFTSASD  193 (269)
T ss_pred             HHHHHHHHHCCEeecccChheEEEcC-CCcEEECCCccccccccCccccccccccCCCcceeecCHhHh-ccCcccchhh
Confidence            99999999999999999999999998 8899999999987543221              259999955 4556899999


Q ss_pred             HHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCc
Q 005958          307 MRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       307 IWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      |||+||++|||++ |.+||...            ......+.+...         ...+....++.++.+++.+||..+|
T Consensus       194 vwslG~~l~e~l~~g~~p~~~~------------~~~~~~~~i~~~---------~~~~~~~~~~~~~~~li~~~l~~~p  252 (269)
T cd05065         194 VWSYGIVMWEVMSYGERPYWDM------------SNQDVINAIEQD---------YRLPPPMDCPTALHQLMLDCWQKDR  252 (269)
T ss_pred             hhhhHHHHHHHhcCCCCCCCCC------------CHHHHHHHHHcC---------CcCCCcccCCHHHHHHHHHHcCCCh
Confidence            9999999999886 99998521            222222222111         0122234567899999999999999


Q ss_pred             CCCCCHHHHHc
Q 005958          386 SKRISCLDALR  396 (667)
Q Consensus       386 ~kRpSa~elL~  396 (667)
                      ++||++.+++.
T Consensus       253 ~~Rp~~~~i~~  263 (269)
T cd05065         253 NARPKFGQIVS  263 (269)
T ss_pred             hhCcCHHHHHH
Confidence            99999999985

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=100.00  E-value=2.5e-35  Score=301.73  Aligned_cols=239  Identities=17%  Similarity=0.174  Sum_probs=190.4

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      ..++|++.+.||+|+||    .||++..       +++.||+|.+........+.+|+.+++.++      ||||+++++
T Consensus         4 ~~~~~~~~~~lg~g~~g----~v~~~~~-------~~~~~~iK~~~~~~~~~~~~~e~~~l~~~~------~~~i~~~~~   66 (254)
T cd05083           4 NLQKLTLGEIIGEGEFG----AVLQGEY-------TGQKVAVKNIKCDVTAQAFLEETAVMTKLH------HKNLVRLLG   66 (254)
T ss_pred             cHHHceeeeeeccCCCC----ceEeccc-------CCCceEEEeecCcchHHHHHHHHHHHHhCC------CCCcCeEEE
Confidence            45789999999999999    9999863       468899999976555567789999999994      999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++.     . +..++||| |+.+|+|.+++.....       ..++                    ...+..++.|++.|
T Consensus        67 ~~~-----~-~~~~~v~e-~~~~~~L~~~l~~~~~-------~~~~--------------------~~~~~~~~~qi~~a  112 (254)
T cd05083          67 VIL-----H-NGLYIVME-LMSKGNLVNFLRTRGR-------ALVS--------------------VIQLLQFSLDVAEG  112 (254)
T ss_pred             EEc-----C-CCcEEEEE-CCCCCCHHHHHHhcCc-------CCCC--------------------HHHHHHHHHHHHHH
Confidence            986     3 34799999 9999999999976431       1233                    34577899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC------CCCCCCcccccCCCCCCchhhHHHHHHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKM  317 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------~~~Y~APE~l~~~~~ys~ksDIWSLGviLyem  317 (667)
                      |.|||++|++||||||+||+++. ++.+||+|||++......      ...|+|||.+ ....++.++|+|||||++|||
T Consensus       113 l~~lH~~~~~H~dl~p~nili~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~y~~pe~~-~~~~~~~~~Dv~slG~~l~el  190 (254)
T cd05083         113 MEYLESKKLVHRDLAARNILVSE-DGVAKVSDFGLARVGSMGVDNSKLPVKWTAPEAL-KHKKFSSKSDVWSYGVLLWEV  190 (254)
T ss_pred             HHHHHhCCeeccccCcceEEEcC-CCcEEECCCccceeccccCCCCCCCceecCHHHh-ccCCcCchhhHHHHHHHHHHH
Confidence            99999999999999999999998 899999999998754332      2569999955 455689999999999999999


Q ss_pred             Hh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHc
Q 005958          318 VL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALR  396 (667)
Q Consensus       318 lt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~  396 (667)
                      ++ |++||...            ........+..   ..      .......+++++++|+.+||+.+|++||++++++.
T Consensus       191 ~~~g~~p~~~~------------~~~~~~~~~~~---~~------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  249 (254)
T cd05083         191 FSYGRAPYPKM------------SLKEVKECVEK---GY------RMEPPEGCPADVYVLMTSCWETEPKKRPSFHKLRE  249 (254)
T ss_pred             HhCCCCCCccC------------CHHHHHHHHhC---CC------CCCCCCcCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            97 99998522            22222222211   10      11223456789999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=100.00  E-value=3.4e-35  Score=306.01  Aligned_cols=241  Identities=15%  Similarity=0.145  Sum_probs=186.7

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCc----EEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCC
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNT----KVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~----~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      +..++|++.+.||+|+||    +||+|.+..     +++    .||+|.+....   ....+..|+.+++++      +|
T Consensus         4 ~~~~~~~~~~~lg~G~~~----~vy~~~~~~-----~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l------~h   68 (279)
T cd05111           4 LKETELRKLKLLGSGVFG----TVHKGIWIP-----EGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSL------DH   68 (279)
T ss_pred             CCHhhceeccccCccCCc----ceEEEEEcC-----CCCceeeEEEEeecccccchHHHHHHHHHHHHHhcC------CC
Confidence            456789999999999999    999999876     344    57888875422   223456777788877      59


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      |||+++++++.      ....+++|| |+.+|+|.+++....        ..+++                    ..+..
T Consensus        69 ~~iv~~~~~~~------~~~~~~i~e-~~~~gsL~~~l~~~~--------~~~~~--------------------~~~~~  113 (279)
T cd05111          69 AYIVRLLGICP------GASLQLVTQ-LSPLGSLLDHVRQHR--------DSLDP--------------------QRLLN  113 (279)
T ss_pred             CCcceEEEEEC------CCccEEEEE-eCCCCcHHHHHHhcc--------cCCCH--------------------HHHHH
Confidence            99999999875      345789999 999999999997643        13443                    45778


Q ss_pred             HHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCch
Q 005958          236 LMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       236 i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~k  304 (667)
                      ++.||+.||.|||++|++||||||+|||++. ++.+||+|||+++.....           ...|+|||.+. ...|+.+
T Consensus       114 i~~qi~~~l~~lH~~~iiH~dlkp~nili~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~-~~~~~~~  191 (279)
T cd05111         114 WCVQIAKGMYYLEEHRMVHRNLAARNILLKS-DSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESIL-FGRYTHQ  191 (279)
T ss_pred             HHHHHHHHHHHHHHCCEeccccCcceEEEcC-CCcEEEcCCccceeccCCCcccccCCCCCcccccCHHHhc-cCCcCch
Confidence            9999999999999999999999999999998 899999999999755322           14699999554 4568999


Q ss_pred             hhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhc
Q 005958          305 FDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLAT  383 (667)
Q Consensus       305 sDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~  383 (667)
                      +|||||||++|||++ |..||.+            ..+....+.+....         ..+....++.++.+++.+||..
T Consensus       192 ~Dv~slG~il~el~t~g~~p~~~------------~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~li~~c~~~  250 (279)
T cd05111         192 SDVWSYGVTVWEMMSYGAEPYAG------------MRPHEVPDLLEKGE---------RLAQPQICTIDVYMVMVKCWMI  250 (279)
T ss_pred             hhHHHHHHHHHHHHcCCCCCCCC------------CCHHHHHHHHHCCC---------cCCCCCCCCHHHHHHHHHHcCC
Confidence            999999999999998 9999852            22222333322110         1112233567899999999999


Q ss_pred             CcCCCCCHHHHHc
Q 005958          384 KPSKRISCLDALR  396 (667)
Q Consensus       384 DP~kRpSa~elL~  396 (667)
                      ||++|||+.|+++
T Consensus       251 ~p~~Rps~~el~~  263 (279)
T cd05111         251 DENVRPTFKELAN  263 (279)
T ss_pred             CcccCcCHHHHHH
Confidence            9999999999876

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=100.00  E-value=6.4e-35  Score=300.07  Aligned_cols=242  Identities=15%  Similarity=0.189  Sum_probs=191.8

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ++..++|++.+.||+|+||    .||+|.+..      +..+|+|.+.... ..+.+.+|+++++.+.      |+||++
T Consensus         2 ~~~~~~~~~~~~lg~g~~~----~vy~~~~~~------~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~------~~~i~~   65 (260)
T cd05073           2 EIPRESLKLEKKLGAGQFG----EVWMATYNK------HTKVAVKTMKPGSMSVEAFLAEANVMKTLQ------HDKLVK   65 (260)
T ss_pred             cccccceeEEeEecCccce----EEEEEEecC------CccEEEEecCCChhHHHHHHHHHHHHHhcC------CCCcce
Confidence            4567899999999999999    999998663      5679999887533 2356788999999994      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++.+.     . ...+++|| |+++|+|.+++.....       ..++                    ...+..++.||
T Consensus        66 ~~~~~~-----~-~~~~~v~e-~~~~~~L~~~~~~~~~-------~~~~--------------------~~~~~~~~~~l  111 (260)
T cd05073          66 LHAVVT-----K-EPIYIITE-FMAKGSLLDFLKSDEG-------SKQP--------------------LPKLIDFSAQI  111 (260)
T ss_pred             EEEEEc-----C-CCeEEEEE-eCCCCcHHHHHHhCCc-------cccC--------------------HHHHHHHHHHH
Confidence            999987     4 67899999 9999999999976320       1222                    24577899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC----------CCCCCcccccCCCCCCchhhHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG----------PNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~----------~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      +.||.|||+.|++|+||||+||+++. ++.+||+|||.+..+....          ..|+|||.+ ....++.++|||||
T Consensus       112 ~~aL~~lH~~~i~H~dl~p~ni~i~~-~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~-~~~~~~~~~Di~sl  189 (260)
T cd05073         112 AEGMAFIEQRNYIHRDLRAANILVSA-SLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAI-NFGSFTIKSDVWSF  189 (260)
T ss_pred             HHHHHHHHhCCccccccCcceEEEcC-CCcEEECCCcceeeccCCCcccccCCcccccccCHhHh-ccCCcCccccchHH
Confidence            99999999999999999999999998 8999999999987654322          349999955 44568999999999


Q ss_pred             HHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          311 GFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       311 GviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      ||++|+|++ |.+||...            ........+..   .      ...+.....+.++.+++.+||+.||++||
T Consensus       190 G~~l~~l~t~g~~p~~~~------------~~~~~~~~~~~---~------~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp  248 (260)
T cd05073         190 GILLMEIVTYGRIPYPGM------------SNPEVIRALER---G------YRMPRPENCPEELYNIMMRCWKNRPEERP  248 (260)
T ss_pred             HHHHHHHHhcCCCCCCCC------------CHHHHHHHHhC---C------CCCCCcccCCHHHHHHHHHHcccCcccCc
Confidence            999999998 99998522            22222222111   1      01122345678999999999999999999


Q ss_pred             CHHHHHc
Q 005958          390 SCLDALR  396 (667)
Q Consensus       390 Sa~elL~  396 (667)
                      ++.++++
T Consensus       249 ~~~~l~~  255 (260)
T cd05073         249 TFEYIQS  255 (260)
T ss_pred             CHHHHHH
Confidence            9998864

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=100.00  E-value=5.2e-35  Score=310.64  Aligned_cols=249  Identities=19%  Similarity=0.204  Sum_probs=197.0

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-----hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ..|+..+.||+|+||    .||+|.+..     ++..||+|.+...     .....+.+|+++++.+      +||||++
T Consensus        25 ~~f~~~~~lg~G~~~----~v~~~~~~~-----~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~   89 (317)
T cd06635          25 KLFTDLREIGHGSFG----AVYFARDVR-----TNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRI------KHPNSIE   89 (317)
T ss_pred             hhhhhhheeccCCCe----EEEEEEEcC-----CCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhC------CCCCEEE
Confidence            448889999999999    999999987     7899999998642     1224567899999999      4999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     +....++||| |+.+ +|.+++....        ..+++                    ..+..++.||
T Consensus        90 ~~~~~~-----~~~~~~lv~e-~~~g-~l~~~~~~~~--------~~l~~--------------------~~~~~i~~~i  134 (317)
T cd06635          90 YKGCYL-----REHTAWLVME-YCLG-SASDLLEVHK--------KPLQE--------------------VEIAAITHGA  134 (317)
T ss_pred             EEEEEe-----eCCeEEEEEe-CCCC-CHHHHHHHhc--------CCCCH--------------------HHHHHHHHHH
Confidence            999998     7788999999 9986 8888876532        13443                    4577799999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----CCCCCCccccc--CCCCCCchhhHHHHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----GPNNSSPDSNM--DRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----~~~Y~APE~l~--~~~~ys~ksDIWSLGvi  313 (667)
                      +.||.|||++||+||||+|+||+++. ++.+||+|||++......     ...|+|||.+.  ....++.++||||+||+
T Consensus       135 ~~~l~~lH~~~i~H~dL~p~Nil~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvi  213 (317)
T cd06635         135 LQGLAYLHSHNMIHRDIKAGNILLTE-PGQVKLADFGSASIASPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGIT  213 (317)
T ss_pred             HHHHHHHHHCCcccCCCCcccEEECC-CCCEEEecCCCccccCCcccccCCccccChhhhhcCCCCCCCccccHHHHHHH
Confidence            99999999999999999999999998 899999999998765432     36799999764  34568899999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      +|||++|.+||...            ........   ......+     .......++.+++||.+||+.+|.+||++.+
T Consensus       214 l~el~~g~~p~~~~------------~~~~~~~~---~~~~~~~-----~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~  273 (317)
T cd06635         214 CIELAERKPPLFNM------------NAMSALYH---IAQNESP-----TLQSNEWSDYFRNFVDSCLQKIPQDRPTSEE  273 (317)
T ss_pred             HHHHHhCCCCCCCc------------cHHHHHHH---HHhccCC-----CCCCccccHHHHHHHHHHccCCcccCcCHHH
Confidence            99999999998421            11111111   1111000     0112346778999999999999999999999


Q ss_pred             HHcCCCCCCCCC
Q 005958          394 ALRHPFLCGPRW  405 (667)
Q Consensus       394 lL~HPwf~~~~~  405 (667)
                      +++|+|+.....
T Consensus       274 il~~~~~~~~~~  285 (317)
T cd06635         274 LLKHMFVLRERP  285 (317)
T ss_pred             HHhChhhhccCc
Confidence            999999977553

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=100.00  E-value=3.6e-35  Score=342.17  Aligned_cols=145  Identities=19%  Similarity=0.302  Sum_probs=127.9

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      +++|+++++||.|+||    .||+|.+..     +++.||||+++...     ....+.+|+.+++.++      ||||+
T Consensus         3 ~~~y~i~~~LG~G~fg----~Vy~a~~~~-----~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~------hp~Iv   67 (669)
T cd05610           3 IEEFVIVKPISRGAFG----KVYLGRKKN-----NSKLYAVKVVKKADMINKNMVHQVQAERDALALSK------SPFIV   67 (669)
T ss_pred             cCCEEEEEEEecCCCe----EEEEEEECC-----CCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcC------CCCcC
Confidence            5899999999999999    999999997     78999999997532     2355788999999884      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++.     ..+.+||||| |+.+|+|.+++...+         .+++                    ..++.|+.|
T Consensus        68 ~~~~~~~-----~~~~~~lVmE-y~~g~~L~~li~~~~---------~l~~--------------------~~~~~i~~q  112 (669)
T cd05610          68 HLYYSLQ-----SANNVYLVME-YLIGGDVKSLLHIYG---------YFDE--------------------EMAVKYISE  112 (669)
T ss_pred             eEEEEEE-----ECCEEEEEEe-CCCCCCHHHHHHhcC---------CCCH--------------------HHHHHHHHH
Confidence            9999998     7789999999 999999999998654         3444                    456889999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccc
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAA  280 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~  280 (667)
                      |+.||.|||.+||+||||||+|||++. ++.+||+|||+++
T Consensus       113 il~aL~yLH~~gIiHrDLKP~NILl~~-~g~vkL~DFGls~  152 (669)
T cd05610         113 VALALDYLHRHGIIHRDLKPDNMLISN-EGHIKLTDFGLSK  152 (669)
T ss_pred             HHHHHHHHHhCCEEeCCccHHHEEEcC-CCCEEEEeCCCCc
Confidence            999999999999999999999999998 8999999999874

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=100.00  E-value=3.6e-35  Score=322.76  Aligned_cols=280  Identities=13%  Similarity=0.109  Sum_probs=202.2

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh---HHHHHHHHHHHHHHhhccCCCCCc
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA---QRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~---~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      +++..++|.+.+.||+|+||    .||+|++.......+++.||+|+++....   .+.+.+|+.+|.++.     .|||
T Consensus        32 ~~~~~~~~~~~~~lG~G~fG----~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~-----~H~n  102 (401)
T cd05107          32 WEMPRDNLVLGRTLGSGAFG----RVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLG-----PHLN  102 (401)
T ss_pred             ceecHHHeehhhhccCCCce----eEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcC-----CCCC
Confidence            55667889999999999999    99999986533334678899999975322   235688999999995     4999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCc-cc-----------cccc-------------------
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLP-TL-----------EATL-------------------  206 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~-~l-----------~~~~-------------------  206 (667)
                      |+++++++.     ..+..++||| |+.+|+|.+++.+.+... ..           ....                   
T Consensus       103 iv~~~~~~~-----~~~~~~iv~E-~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (401)
T cd05107         103 IVNLLGACT-----KGGPIYIITE-YCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDG  176 (401)
T ss_pred             eEEEEEEEc-----cCCCcEEEEe-ccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCc
Confidence            999999998     6778999999 999999999998653100 00           0000                   


Q ss_pred             ---CCCHHHHhhcC-----------------------------------CCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 005958          207 ---ALDEESVRKVG-----------------------------------DDSIGGPAASRQLRLIRLLMRDLLIGVNYLH  248 (667)
Q Consensus       207 ---~l~E~~a~~~~-----------------------------------~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLH  248 (667)
                         ..++..+..+.                                   ..........+++..+..|+.||+.||.|||
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH  256 (401)
T cd05107         177 GYMDMSKDESADYVPMQDMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLA  256 (401)
T ss_pred             cccccCCccccCccchhcchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence               00000000000                                   0000011234566788999999999999999


Q ss_pred             HCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhhHHHHHHHHHHH
Q 005958          249 SHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKM  317 (667)
Q Consensus       249 s~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksDIWSLGviLyem  317 (667)
                      +.||+||||||+|||++. ++.+||+|||+++.....           ...|+|||.+. ...++.++|||||||++|||
T Consensus       257 ~~~ivHrdlkp~NiLl~~-~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~DvwslGvil~e~  334 (401)
T cd05107         257 SKNCVHRDLAARNVLICE-GKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIF-NNLYTTLSDVWSFGILLWEI  334 (401)
T ss_pred             cCCcCcccCCcceEEEeC-CCEEEEEecCcceecccccccccCCCcCCCCceeChHHhc-CCCCCcHhHHHHHHHHHHHH
Confidence            999999999999999998 899999999999754321           14599999654 45689999999999999999


Q ss_pred             Hh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHc
Q 005958          318 VL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALR  396 (667)
Q Consensus       318 lt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~  396 (667)
                      ++ |..||....           ..+...+.+..   ..      ....+..++.++.+||.+||..||++||++.++++
T Consensus       335 l~~g~~P~~~~~-----------~~~~~~~~~~~---~~------~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~ell~  394 (401)
T cd05107         335 FTLGGTPYPELP-----------MNEQFYNAIKR---GY------RMAKPAHASDEIYEIMQKCWEEKFEIRPDFSQLVH  394 (401)
T ss_pred             HHcCCCCCCCCC-----------chHHHHHHHHc---CC------CCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence            98 888885221           11111121111   10      11223456889999999999999999999999986


Q ss_pred             C
Q 005958          397 H  397 (667)
Q Consensus       397 H  397 (667)
                      .
T Consensus       395 ~  395 (401)
T cd05107         395 L  395 (401)
T ss_pred             H
Confidence            4

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=100.00  E-value=6.6e-35  Score=298.41  Aligned_cols=240  Identities=18%  Similarity=0.179  Sum_probs=190.4

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-hhHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      ..+|++.+.||.|+||    .||+|.+..      +..+|+|.+... .....+.+|+++++.+.      ||||+++++
T Consensus         3 ~~~~~~~~~ig~g~~g----~v~~~~~~~------~~~~~~k~~~~~~~~~~~~~~e~~~l~~l~------~~~i~~~~~   66 (256)
T cd05112           3 PSELTLVQEIGSGQFG----LVWLGYWLE------KRKVAIKTIREGAMSEEDFIEEAQVMMKLS------HPKLVQLYG   66 (256)
T ss_pred             hhHeEEEeeecCcccc----eEEEEEEeC------CCeEEEEECCCCCCCHHHHHHHHHHHHhCC------CCCeeeEEE
Confidence            4689999999999999    999998863      678999998753 23356788999999994      999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++.     .....++||| |+.+|+|.+++....        ..+++                    ..++.++.|++.|
T Consensus        67 ~~~-----~~~~~~~v~e-~~~~~~L~~~~~~~~--------~~~~~--------------------~~~~~~~~~l~~~  112 (256)
T cd05112          67 VCT-----ERSPICLVFE-FMEHGCLSDYLRAQR--------GKFSQ--------------------ETLLGMCLDVCEG  112 (256)
T ss_pred             EEc-----cCCceEEEEE-cCCCCcHHHHHHhCc--------cCCCH--------------------HHHHHHHHHHHHH
Confidence            998     7778999999 999999999987542        12343                    4577899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC----------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED----------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~----------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      |+|||++||+|+||||+||+++. ++.+||+|||.+......          ...|+|||.+. ...++.++|||||||+
T Consensus       113 l~~lH~~~i~h~dl~p~ni~i~~-~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~aPe~~~-~~~~~~~~Dv~slG~~  190 (256)
T cd05112         113 MAYLESSNVIHRDLAARNCLVGE-NQVVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSPEVFS-FSKYSSKSDVWSFGVL  190 (256)
T ss_pred             HHHHHHCCccccccccceEEEcC-CCeEEECCCcceeecccCcccccCCCccchhhcCHhHhc-cCCcChHHHHHHHHHH
Confidence            99999999999999999999998 889999999998754322          13699999554 4568999999999999


Q ss_pred             HHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHH
Q 005958          314 MAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCL  392 (667)
Q Consensus       314 Lyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~  392 (667)
                      +|||++ |.+||...            ....+.+.+..   ..      ........+.++.+|+.+||+.+|++|||+.
T Consensus       191 l~el~~~g~~p~~~~------------~~~~~~~~~~~---~~------~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~  249 (256)
T cd05112         191 MWEVFSEGKTPYENR------------SNSEVVETINA---GF------RLYKPRLASQSVYELMQHCWKERPEDRPSFS  249 (256)
T ss_pred             HHHHHcCCCCCCCcC------------CHHHHHHHHhC---CC------CCCCCCCCCHHHHHHHHHHcccChhhCCCHH
Confidence            999998 99998521            11122222111   00      0111223578999999999999999999999


Q ss_pred             HHHcC
Q 005958          393 DALRH  397 (667)
Q Consensus       393 elL~H  397 (667)
                      +++++
T Consensus       250 ~~l~~  254 (256)
T cd05112         250 LLLHQ  254 (256)
T ss_pred             HHHHh
Confidence            99874

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=5.3e-35  Score=306.74  Aligned_cols=264  Identities=14%  Similarity=0.145  Sum_probs=191.8

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCC---------CCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhcc
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNS---------PLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRR  151 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~---------~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~  151 (667)
                      ..++|++.+.||+|+||    .||+|++.....         ......||+|.+...   .....+.+|++++++++   
T Consensus         3 ~~~~~~~~~~lg~G~~g----~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~---   75 (295)
T cd05097           3 PRQQLRLKEKLGEGQFG----EVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLK---   75 (295)
T ss_pred             chHhCeehhccCCCCCc----eEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCC---
Confidence            44789999999999999    999998764210         012346999998753   22345788999999995   


Q ss_pred             CCCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHH
Q 005958          152 LMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLR  231 (667)
Q Consensus       152 ~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~  231 (667)
                         ||||+++++++.     ..+..++||| |+.+++|.+++.........    ..             ......++..
T Consensus        76 ---h~~i~~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~~~~~~----~~-------------~~~~~~~~~~  129 (295)
T cd05097          76 ---NPNIIRLLGVCV-----SDDPLCMITE-YMENGDLNQFLSQREIESTF----TH-------------ANNIPSVSIA  129 (295)
T ss_pred             ---CCCcCeEEEEEc-----CCCccEEEEe-cCCCCcHHHHHHhccccccc----cc-------------cccCCcccHH
Confidence               999999999998     7788999999 99999999999764311000    00             0001123346


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCC
Q 005958          232 LIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQ  300 (667)
Q Consensus       232 ~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~  300 (667)
                      .+..++.|++.||.|||++||+||||||+||+++. ++.+||+|||++......           ...|+|||.+.. ..
T Consensus       130 ~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nill~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~  207 (295)
T cd05097         130 NLLYMAVQIASGMKYLASLNFVHRDLATRNCLVGN-HYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILL-GK  207 (295)
T ss_pred             HHHHHHHHHHHHHHHHHhcCeeccccChhhEEEcC-CCcEEecccccccccccCcceeccCcCcCceeecChhhhcc-CC
Confidence            77889999999999999999999999999999998 889999999999754322           146999996554 45


Q ss_pred             CCchhhHHHHHHHHHHHHh--CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHH
Q 005958          301 MMIAFDMRCVGFMMAKMVL--RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLS  378 (667)
Q Consensus       301 ys~ksDIWSLGviLyemlt--G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~  378 (667)
                      ++.++|||||||++|+|++  |..||...            .................  ........+..++.+++||.
T Consensus       208 ~~~~~DvwSlG~~l~el~~~~~~~p~~~~------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~li~  273 (295)
T cd05097         208 FTTASDVWAFGVTLWEMFTLCKEQPYSLL------------SDEQVIENTGEFFRNQG--RQIYLSQTPLCPSPVFKLMM  273 (295)
T ss_pred             cCchhhHHHHHHHHHHHHHcCCCCCCccc------------ChHHHHHHHHHhhhhcc--ccccCCCCCCCCHHHHHHHH
Confidence            8999999999999999998  56676421            11111111111110000  00011223346789999999


Q ss_pred             HhhhcCcCCCCCHHHHHc
Q 005958          379 LLLATKPSKRISCLDALR  396 (667)
Q Consensus       379 ~~L~~DP~kRpSa~elL~  396 (667)
                      +||..||++|||++++++
T Consensus       274 ~~l~~~p~~RPs~~~i~~  291 (295)
T cd05097         274 RCWSRDIKDRPTFNKIHH  291 (295)
T ss_pred             HHcCCCchhCcCHHHHHH
Confidence            999999999999999975

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=6e-35  Score=299.45  Aligned_cols=234  Identities=13%  Similarity=0.147  Sum_probs=184.8

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEec
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSH  168 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~  168 (667)
                      ++||+|+||    .||+|.......  ++..||+|.+....   ..+.+.+|+++++.+      .||||+++++++.  
T Consensus         1 ~~ig~G~~g----~v~~~~~~~~~~--~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~--   66 (257)
T cd05060           1 KELGHGNFG----SVVKGVYLMKSG--KEVEVAVKTLKQEHIAAGKKEFLREASVMAQL------DHPCIVRLIGVCK--   66 (257)
T ss_pred             CccCccCce----eEEEeEeeccCC--CcceEEEEecccccchHHHHHHHHHHHHHHhc------CCCCeeeEEEEEc--
Confidence            479999999    999998765211  33789999987543   345678899999999      4999999999875  


Q ss_pred             ccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 005958          169 TTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLH  248 (667)
Q Consensus       169 ~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLH  248 (667)
                          ....++||| |+++|+|.+++....         .+++                    ..+..++.|++.||+|||
T Consensus        67 ----~~~~~~v~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~~~~~qi~~~l~~lh  112 (257)
T cd05060          67 ----GEPLMLVME-LAPLGPLLKYLKKRR---------EIPV--------------------SDLKELAHQVAMGMAYLE  112 (257)
T ss_pred             ----CCceEEEEE-eCCCCcHHHHHHhCC---------CCCH--------------------HHHHHHHHHHHHHHHHHh
Confidence                346899999 999999999998653         3443                    457889999999999999


Q ss_pred             HCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC------------CCCCCcccccCCCCCCchhhHHHHHHHHHH
Q 005958          249 SHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG------------PNNSSPDSNMDRRQMMIAFDMRCVGFMMAK  316 (667)
Q Consensus       249 s~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~------------~~Y~APE~l~~~~~ys~ksDIWSLGviLye  316 (667)
                      .+||+|+||||+|||++. ++.+||+|||+++......            ..|+|||.+ ....++.++|||||||++|+
T Consensus       113 ~~~i~H~di~p~nili~~-~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~~l~~  190 (257)
T cd05060         113 SKHFVHRDLAARNVLLVN-RHQAKISDFGMSRALGAGSDYYRATTAGRWPLKWYAPECI-NYGKFSSKSDVWSYGVTLWE  190 (257)
T ss_pred             hcCeeccCcccceEEEcC-CCcEEeccccccceeecCCcccccccCccccccccCHHHh-cCCCCCccchHHHHHHHHHH
Confidence            999999999999999998 8999999999997653332            259999955 45568999999999999999


Q ss_pred             HHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHH
Q 005958          317 MVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDAL  395 (667)
Q Consensus       317 mlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL  395 (667)
                      |++ |.+||...            ....+...+..   ..      ..+....+++.++++|.+||..||++||++.+++
T Consensus       191 ~~~~g~~p~~~~------------~~~~~~~~~~~---~~------~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~~l~  249 (257)
T cd05060         191 AFSYGAKPYGEM------------KGAEVIAMLES---GE------RLPRPEECPQEIYSIMLSCWKYRPEDRPTFSELE  249 (257)
T ss_pred             HHcCCCCCcccC------------CHHHHHHHHHc---CC------cCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHH
Confidence            998 99998521            12222222211   10      1223345778999999999999999999999987


Q ss_pred             c
Q 005958          396 R  396 (667)
Q Consensus       396 ~  396 (667)
                      +
T Consensus       250 ~  250 (257)
T cd05060         250 S  250 (257)
T ss_pred             H
Confidence            5

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=100.00  E-value=5.8e-35  Score=301.64  Aligned_cols=244  Identities=16%  Similarity=0.216  Sum_probs=180.4

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEec
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSH  168 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~  168 (667)
                      +.||+|+||    .||+|.....   .....+|+|.+....   ....+.+|+.+++.+      +||||+++++.+.  
T Consensus         1 ~~lg~G~fg----~v~~~~~~~~---~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l------~h~nii~~~~~~~--   65 (269)
T cd05042           1 DEIGNGWFG----KVLLGEAHRG---MSKARVVVKELRASATPDEQLLFLQEVQPYREL------NHPNVLQCLGQCI--   65 (269)
T ss_pred             CcCCccCCc----eEEEEEEecC---CCCeEEEEeecCccCChHHHHHHHHHHHHHHhC------CCCCcceEEEEEC--
Confidence            469999999    9999976532   145679999876432   234567899999988      4999999999998  


Q ss_pred             ccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 005958          169 TTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLH  248 (667)
Q Consensus       169 ~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLH  248 (667)
                         .....|+||| |+++|+|.+++........    ..++                    ...+..++.||+.||+|||
T Consensus        66 ---~~~~~~lv~e-~~~~g~L~~~l~~~~~~~~----~~~~--------------------~~~~~~~~~qi~~~l~~lH  117 (269)
T cd05042          66 ---ESIPYLLVLE-FCPLGDLKNYLRSNRGMVA----QMAQ--------------------KDVLQRMACEVASGLLWLH  117 (269)
T ss_pred             ---CCCceEEEEE-eCCCCcHHHHHHhcccccc----cccc--------------------HHHHHHHHHHHHHHHHHHH
Confidence               7788999999 9999999999987531100    0112                    2457789999999999999


Q ss_pred             HCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccC------CCCCCchhhHHHHH
Q 005958          249 SHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMD------RRQMMIAFDMRCVG  311 (667)
Q Consensus       249 s~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~------~~~ys~ksDIWSLG  311 (667)
                      ++||+||||||+|||++. ++.+||+|||++......           ...|+|||++..      ...++.++||||||
T Consensus       118 ~~~ivH~dlkp~Nill~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG  196 (269)
T cd05042         118 QADFIHSDLALRNCQLTA-DLSVKIGDYGLALEQYPEDYYITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLG  196 (269)
T ss_pred             hcCEecccccHhheEecC-CCcEEEeccccccccccchheeccCCCCCcccccCHHHHhhccccccccccchhhHHHHHH
Confidence            999999999999999998 899999999998653221           145999996532      34578899999999


Q ss_pred             HHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          312 FMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       312 viLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      |++|||++ |.+||....           +...+...+...   ...  ..........++...+++..|+ .||++|||
T Consensus       197 ~~l~el~~~~~~p~~~~~-----------~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~-~dp~~Rpt  259 (269)
T cd05042         197 VTMWELFTAADQPYPDLS-----------DEQVLKQVVREQ---DIK--LPKPQLDLKYSDRWYEVMQFCW-LDPETRPT  259 (269)
T ss_pred             HHHHHHHhCCCCCCCcCC-----------HHHHHHHHhhcc---Ccc--CCCCcccccCCHHHHHHHHHHh-cCcccccC
Confidence            99999999 788885221           111111111111   000  0011223456788899999998 59999999


Q ss_pred             HHHHHc
Q 005958          391 CLDALR  396 (667)
Q Consensus       391 a~elL~  396 (667)
                      ++++++
T Consensus       260 ~~~v~~  265 (269)
T cd05042         260 AEEVHE  265 (269)
T ss_pred             HHHHHH
Confidence            999875

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=5.1e-35  Score=302.10  Aligned_cols=238  Identities=13%  Similarity=0.136  Sum_probs=180.8

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCC-------CCCCcEEEEEEEcchhh--HHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNS-------PLHNTKVVLRQLISVQA--QRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~-------~~tg~~vAvK~i~~~~~--~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      +.||+|+||    .||+|+......       ......||+|.+.....  ...+..|+.+++.+      +||||++++
T Consensus         1 ~~lg~G~~~----~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l------~hp~iv~~~   70 (262)
T cd05077           1 EHLGRGTRT----QIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQV------SHKHIVLLY   70 (262)
T ss_pred             CccccCCcc----eEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhC------CCCCEeeEE
Confidence            468999999    999998643210       12345689998865322  23457788889888      499999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     .....++||| |+++|+|..++....        ..+++                    ..+..++.||+.
T Consensus        71 ~~~~-----~~~~~~lv~e-~~~~~~l~~~~~~~~--------~~~~~--------------------~~~~~i~~qi~~  116 (262)
T cd05077          71 GVCV-----RDVENIMVEE-FVEFGPLDLFMHRKS--------DVLTT--------------------PWKFKVAKQLAS  116 (262)
T ss_pred             EEEe-----cCCCCEEEEe-cccCCCHHHHHHhcC--------CCCCH--------------------HHHHHHHHHHHH
Confidence            9998     6678899999 999999999887532        13443                    456789999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCC-------eEEEeeecccccccCC-----CCCCCCcccccCCCCCCchhhHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDR-------HIKVGILGNAADFYED-----GPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~-------~vKL~DFGlA~~~~~~-----~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      ||+|||++||+||||||+|||++. ++       .++++|||++......     ...|+|||.+.....++.++|||||
T Consensus       117 ~l~~lH~~~ivH~dlkp~Nill~~-~~~~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Diwsl  195 (262)
T cd05077         117 ALSYLEDKDLVHGNVCTKNILLAR-EGIDGECGPFIKLSDPGIPITVLSRQECVERIPWIAPECVEDSKNLSIAADKWSF  195 (262)
T ss_pred             HHHHhhhCCeECCCCCcccEEEec-CCccCCCCceeEeCCCCCCccccCcccccccccccChhhhcCCCCCCchhHHHHH
Confidence            999999999999999999999986 44       3899999998765432     3569999976666779999999999


Q ss_pred             HHHHHHHH-hCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          311 GFMMAKMV-LRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       311 GviLyeml-tG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      ||++|||+ .|.+||...            ............           .......++++.+||.+||+.||++||
T Consensus       196 G~~l~el~~~~~~p~~~~------------~~~~~~~~~~~~-----------~~~~~~~~~~~~~li~~cl~~dp~~Rp  252 (262)
T cd05077         196 GTTLWEICYNGEIPLKDK------------TLAEKERFYEGQ-----------CMLVTPSCKELADLMTHCMNYDPNQRP  252 (262)
T ss_pred             HHHHHHHHhCCCCCCCCc------------chhHHHHHHhcC-----------ccCCCCChHHHHHHHHHHcCCChhhCc
Confidence            99999998 588887521            111111111100           111223457899999999999999999


Q ss_pred             CHHHHHcC
Q 005958          390 SCLDALRH  397 (667)
Q Consensus       390 Sa~elL~H  397 (667)
                      ++.+++++
T Consensus       253 ~~~~il~~  260 (262)
T cd05077         253 FFRAIMRD  260 (262)
T ss_pred             CHHHHHHh
Confidence            99999875

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=1.7e-35  Score=304.24  Aligned_cols=239  Identities=18%  Similarity=0.191  Sum_probs=182.9

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCC--CCCCcEEEEEEEcchh--hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEe
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNS--PLHNTKVVLRQLISVQ--AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSS  167 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~--~~tg~~vAvK~i~~~~--~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~  167 (667)
                      +.||.|+||    .||+|.+...+.  ......||+|.+....  ..+.+..|+.+++.+      .||||+++++++. 
T Consensus         1 ~~lg~G~~~----~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~------~h~~iv~~~~~~~-   69 (258)
T cd05078           1 ESLGQGTFT----KIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQL------SHKHLVLNYGVCV-   69 (258)
T ss_pred             CCCCcccch----hheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhC------CCCChhheeeEEE-
Confidence            469999999    999999875321  1234568999886532  234567889999988      4999999999998 


Q ss_pred             cccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHH
Q 005958          168 HTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYL  247 (667)
Q Consensus       168 ~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yL  247 (667)
                          .....++||| |+++|+|.+++...+.        .+++                    ..+..++.||+.||+||
T Consensus        70 ----~~~~~~lv~e-~~~~g~L~~~l~~~~~--------~~~~--------------------~~~~~~~~qi~~~l~~l  116 (258)
T cd05078          70 ----CGDESIMVQE-YVKFGSLDTYLKKNKN--------LINI--------------------SWKLEVAKQLAWALHFL  116 (258)
T ss_pred             ----eCCCcEEEEe-cCCCCcHHHHHhcCCC--------CCCH--------------------HHHHHHHHHHHHHHHHH
Confidence                6678999999 9999999999986531        2333                    45678999999999999


Q ss_pred             HHCCCcccCCCCCcEEEcCCCC-------eEEEeeecccccccCC-----CCCCCCcccccCCCCCCchhhHHHHHHHHH
Q 005958          248 HSHGLAHTELRLENVHISPVDR-------HIKVGILGNAADFYED-----GPNNSSPDSNMDRRQMMIAFDMRCVGFMMA  315 (667)
Q Consensus       248 Hs~gIvHrDLKPeNILl~~~~~-------~vKL~DFGlA~~~~~~-----~~~Y~APE~l~~~~~ys~ksDIWSLGviLy  315 (667)
                      |++||+||||||+||+++.++.       .++++|||.+......     ...|+|||++.+...++.++|||||||++|
T Consensus       117 H~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~  196 (258)
T cd05078         117 EDKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVLPKEILLERIPWVPPECIENPQNLSLAADKWSFGTTLW  196 (258)
T ss_pred             HHCCeecCCCccceEEEecccccccCCCceEEecccccccccCCchhccccCCccCchhccCCCCCCchhhHHHHHHHHH
Confidence            9999999999999999987322       2799999998755432     367999997766667899999999999999


Q ss_pred             HHHhCC-CCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHH
Q 005958          316 KMVLRE-LMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDA  394 (667)
Q Consensus       316 emltG~-~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~el  394 (667)
                      ||++|. +||...            .+........    .       ........+.++.+||.+||+.||++|||++++
T Consensus       197 ~l~~g~~~~~~~~------------~~~~~~~~~~----~-------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~i  253 (258)
T cd05078         197 EIFSGGDKPLSAL------------DSQKKLQFYE----D-------RHQLPAPKWTELANLINQCMDYEPDFRPSFRAI  253 (258)
T ss_pred             HHHcCCCCChhhc------------cHHHHHHHHH----c-------cccCCCCCcHHHHHHHHHHhccChhhCCCHHHH
Confidence            999984 665321            1111111111    0       112233456789999999999999999999999


Q ss_pred             HcC
Q 005958          395 LRH  397 (667)
Q Consensus       395 L~H  397 (667)
                      ++.
T Consensus       254 l~~  256 (258)
T cd05078         254 IRD  256 (258)
T ss_pred             HHh
Confidence            864

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=100.00  E-value=2.7e-35  Score=302.27  Aligned_cols=244  Identities=19%  Similarity=0.288  Sum_probs=189.9

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcc-------hhhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS-------VQAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~-------~~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      +|.+.+.||+|+||    .||++.+..     ++..+++|+++.       ........+|+.+++.++      ||||+
T Consensus         1 ~y~i~~~ig~g~~g----~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~------h~~i~   65 (260)
T cd08222           1 RYILQQRLGKGSFG----TVYLVKDKK-----AVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLD------HPAIV   65 (260)
T ss_pred             CceeeeeecCCCCc----eEEEEEecC-----CCCcceEEEeccccccccCcchHHHHHHHHHHHHhCC------CCcHH
Confidence            58999999999999    999999887     556666666653       112234567899999984      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++.     +....++||| |+++++|.+++.....     ....+++                    ..++.++.|
T Consensus        66 ~~~~~~~-----~~~~~~lv~e-~~~~~~l~~~~~~~~~-----~~~~~~~--------------------~~~~~~~~~  114 (260)
T cd08222          66 KFHASFL-----ERDAFCIITE-YCEGRDLDCKLEELKH-----TGKTLSE--------------------NQVCEWFIQ  114 (260)
T ss_pred             HHHHHHh-----cCCceEEEEE-eCCCCCHHHHHHHHhh-----cccccCH--------------------HHHHHHHHH
Confidence            9999988     6778999999 9999999999875321     0113444                    457889999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      ++.||.|||++|++|+||||+||+++.  +.++|+|||++.....         +.+.|+|||.+ ....++.++|+||+
T Consensus       115 l~~~l~~lH~~~i~h~~l~~~nili~~--~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~pe~~-~~~~~~~~~Dv~sl  191 (260)
T cd08222         115 LLLGVHYMHQRRILHRDLKAKNIFLKN--NLLKIGDFGVSRLLMGSCDLATTFTGTPYYMSPEAL-KHQGYDSKSDIWSL  191 (260)
T ss_pred             HHHHHHHHHHcCccccCCChhheEeec--CCEeecccCceeecCCCcccccCCCCCcCccCHHHH-ccCCCCchhhHHHH
Confidence            999999999999999999999999985  6799999999875532         22579999965 44568889999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      |+++|+|++|..||...            ..   ............+      .....++.++.++|.+||..||++||+
T Consensus       192 G~~~~~l~~~~~~~~~~------------~~---~~~~~~~~~~~~~------~~~~~~~~~~~~li~~~l~~~p~~Rp~  250 (260)
T cd08222         192 GCILYEMCCLAHAFEGQ------------NF---LSVVLRIVEGPTP------SLPETYSRQLNSIMQSMLNKDPSLRPS  250 (260)
T ss_pred             HHHHHHHHhCCCCCCCc------------cH---HHHHHHHHcCCCC------CCcchhcHHHHHHHHHHhcCChhhCcC
Confidence            99999999999998521            11   1111122211111      122456789999999999999999999


Q ss_pred             HHHHHcCCCC
Q 005958          391 CLDALRHPFL  400 (667)
Q Consensus       391 a~elL~HPwf  400 (667)
                      +.++++||||
T Consensus       251 ~~~il~~~~~  260 (260)
T cd08222         251 AAEILRNPFI  260 (260)
T ss_pred             HHHHhhCCCC
Confidence            9999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=4.1e-35  Score=302.53  Aligned_cols=241  Identities=20%  Similarity=0.246  Sum_probs=184.9

Q ss_pred             EEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEE
Q 005958           89 KILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYV  165 (667)
Q Consensus        89 ~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~  165 (667)
                      ++.+.||.|+||    .||+|.... .....+..|+||.++..   ...+.+.+|++++++++      ||||+++++++
T Consensus         2 ~~~~~ig~G~fg----~v~~~~~~~-~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~------h~ni~~~~g~~   70 (259)
T PF07714_consen    2 KLIKQIGEGSFG----KVYRAEWKQ-KDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLR------HPNIVKLYGFC   70 (259)
T ss_dssp             EEEEEEEEESSE----EEEEEEEES-TTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHS------BTTBE-EEEEE
T ss_pred             EEeeEEccCCCc----EEEEEEEEc-ccCCCCEEEEEEEeccccccccceeeeeccccccccc------ccccccccccc
Confidence            578999999999    999999993 22236789999999652   23467789999999995      99999999999


Q ss_pred             EecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHH
Q 005958          166 SSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVN  245 (667)
Q Consensus       166 ~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~  245 (667)
                      .     ..+..++||| |+.+|+|.++|....       ...++                    ...+..++.||+.||.
T Consensus        71 ~-----~~~~~~lv~e-~~~~g~L~~~L~~~~-------~~~~~--------------------~~~~~~i~~~i~~~l~  117 (259)
T PF07714_consen   71 I-----ENEPLFLVME-YCPGGSLDDYLKSKN-------KEPLS--------------------EQQRLSIAIQIAEALS  117 (259)
T ss_dssp             E-----SSSSEEEEEE---TTEBHHHHHHHTC-------TTTSB--------------------HHHHHHHHHHHHHHHH
T ss_pred             c-----cccccccccc-ccccccccccccccc-------ccccc--------------------cccccccccccccccc
Confidence            9     6677999999 999999999999851       01233                    3567889999999999


Q ss_pred             HHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          246 YLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       246 yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      |||+++|+|+||+++|||++. ++.+||+|||++......           ...|+|||.+.. ..++.++||||||+++
T Consensus       118 ~Lh~~~iiH~~l~~~nill~~-~~~~Kl~~f~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~ksDVysfG~~l  195 (259)
T PF07714_consen  118 YLHSNNIIHGNLSPSNILLDS-NGQVKLSDFGLSRPISEKSKYKNDSSQQLPLRYLAPEVLKD-GEYTKKSDVYSFGMLL  195 (259)
T ss_dssp             HHHHTTEEEST-SGGGEEEET-TTEEEEESTTTGEETTTSSSEEESTTSESGGGGS-HHHHHH-SEESHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccc
Confidence            999999999999999999999 899999999999876221           156899995544 4489999999999999


Q ss_pred             HHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          315 AKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       315 yemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      |||++ |+.||.+            .....+.+.+....         ..+....++..+.++|.+||..||++|||+.+
T Consensus       196 ~ei~~~~~~p~~~------------~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~li~~C~~~~p~~RPs~~~  254 (259)
T PF07714_consen  196 YEILTLGKFPFSD------------YDNEEIIEKLKQGQ---------RLPIPDNCPKDIYSLIQQCWSHDPEKRPSFQE  254 (259)
T ss_dssp             HHHHTTSSGTTTT------------SCHHHHHHHHHTTE---------ETTSBTTSBHHHHHHHHHHT-SSGGGS--HHH
T ss_pred             ccccccccccccc------------cccccccccccccc---------cceeccchhHHHHHHHHHHcCCChhhCcCHHH
Confidence            99999 6788742            22333223322111         12234567889999999999999999999999


Q ss_pred             HHc
Q 005958          394 ALR  396 (667)
Q Consensus       394 lL~  396 (667)
                      +++
T Consensus       255 i~~  257 (259)
T PF07714_consen  255 ILQ  257 (259)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            975

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=100.00  E-value=8.3e-35  Score=299.44  Aligned_cols=233  Identities=16%  Similarity=0.159  Sum_probs=182.4

Q ss_pred             EeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEecc
Q 005958           93 RVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHT  169 (667)
Q Consensus        93 ~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~  169 (667)
                      .||+|+||    .||+|.+....   .+..||+|++....   ..+.+.+|+.++++++      ||||+++++++.   
T Consensus         2 ~ig~G~~g----~v~~~~~~~~~---~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~------h~~ii~~~~~~~---   65 (257)
T cd05115           2 ELGSGNFG----CVKKGVYKMRK---KQIDVAIKVLKNENEKSVRDEMMREAEIMHQLD------NPYIVRMIGVCE---   65 (257)
T ss_pred             ccCCCCcc----cEEEEEEecCC---CceeEEEEEcccccChHHHHHHHHHHHHHHhcC------CCCeEEEEEEEc---
Confidence            48999999    99999876421   45679999987532   2345789999999995      999999999875   


Q ss_pred             cCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHH
Q 005958          170 TSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHS  249 (667)
Q Consensus       170 ~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs  249 (667)
                         ....++||| |+++|+|.+++....        ..+++                    ..+..++.||+.||.|||+
T Consensus        66 ---~~~~~lv~e-~~~~~~L~~~l~~~~--------~~~~~--------------------~~~~~~~~~i~~~l~~lH~  113 (257)
T cd05115          66 ---AEALMLVME-MASGGPLNKFLSGKK--------DEITV--------------------SNVVELMHQVSMGMKYLEG  113 (257)
T ss_pred             ---CCCeEEEEE-eCCCCCHHHHHHhCC--------CCCCH--------------------HHHHHHHHHHHHHHHHHHh
Confidence               346899999 999999999987532        13444                    4577899999999999999


Q ss_pred             CCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC------------CCCCCCcccccCCCCCCchhhHHHHHHHHHHH
Q 005958          250 HGLAHTELRLENVHISPVDRHIKVGILGNAADFYED------------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKM  317 (667)
Q Consensus       250 ~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------------~~~Y~APE~l~~~~~ys~ksDIWSLGviLyem  317 (667)
                      +||+||||||+|||++. ++.+||+|||++......            ...|+|||.+. ...++.++|||||||++|||
T Consensus       114 ~~i~H~dlkp~nil~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~slG~~l~el  191 (257)
T cd05115         114 KNFVHRDLAARNVLLVN-QHYAKISDFGLSKALGADDSYYKARSAGKWPLKWYAPECIN-FRKFSSRSDVWSYGITMWEA  191 (257)
T ss_pred             cCeeecccchheEEEcC-CCcEEeccCCccccccCCccceeccCCCCCCcccCCHHHHc-cCCCCchhhHHHHHHHHHHH
Confidence            99999999999999998 889999999998754322            14699999554 45589999999999999999


Q ss_pred             Hh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHc
Q 005958          318 VL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALR  396 (667)
Q Consensus       318 lt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~  396 (667)
                      ++ |.+||...            ........+...   .      ........++++.++|.+||..||++||++.++.+
T Consensus       192 ~~~g~~p~~~~------------~~~~~~~~~~~~---~------~~~~~~~~~~~l~~li~~c~~~~~~~Rp~~~~i~~  250 (257)
T cd05115         192 FSYGQKPYKKM------------KGPEVMSFIEQG---K------RLDCPAECPPEMYALMKDCWIYKWEDRPNFAKVEE  250 (257)
T ss_pred             hcCCCCCcCcC------------CHHHHHHHHHCC---C------CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            96 99998522            222222222111   1      12233456889999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.7e-35  Score=296.65  Aligned_cols=233  Identities=21%  Similarity=0.299  Sum_probs=191.2

Q ss_pred             eccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEec
Q 005958           94 VSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSH  168 (667)
Q Consensus        94 LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~  168 (667)
                      ||.|+||    .||+|.+..     +++.||+|.+....     ....+.+|+++++.+.      ||||+++++.+.  
T Consensus         1 lg~G~~~----~v~~~~~~~-----~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~~~~~~~--   63 (250)
T cd05123           1 LGKGSFG----KVLLVRKKD-----TGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRIN------HPFIVKLHYAFQ--   63 (250)
T ss_pred             CCCCCce----EEEEEEECC-----CCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcC------CCcHHHHHHHee--
Confidence            6899999    999999987     78999999987632     2345688999999995      999999999998  


Q ss_pred             ccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 005958          169 TTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLH  248 (667)
Q Consensus       169 ~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLH  248 (667)
                         .+...|+||| |+++++|.+++....         .+++                    ..+..++.|++.||.|||
T Consensus        64 ---~~~~~~~v~e-~~~~~~L~~~l~~~~---------~l~~--------------------~~~~~~~~qi~~~l~~lh  110 (250)
T cd05123          64 ---TEEKLYLVLE-YAPGGELFSHLSKEG---------RFSE--------------------ERARFYAAEIVLALEYLH  110 (250)
T ss_pred             ---cCCeeEEEEe-cCCCCcHHHHHHhcC---------CCCH--------------------HHHHHHHHHHHHHHHHHH
Confidence               7889999999 998889999998753         3443                    457789999999999999


Q ss_pred             HCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHHHHHHHh
Q 005958          249 SHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVL  319 (667)
Q Consensus       249 s~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemlt  319 (667)
                      +.|++|+||+|+||+++. ++.++|+|||.+......         ...|+|||... ...++.++|+||||+++|+|++
T Consensus       111 ~~~~~H~~l~p~ni~~~~-~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~-~~~~~~~~D~~slG~~~~~l~~  188 (250)
T cd05123         111 SLGIIYRDLKPENILLDA-DGHIKLTDFGLAKELSSEGSRTNTFCGTPEYLAPEVLL-GKGYGKAVDWWSLGVLLYEMLT  188 (250)
T ss_pred             HCCceecCCCcceEEEcC-CCcEEEeecCcceecccCCCcccCCcCCccccChHHhC-CCCCCchhhHHHHHHHHHHHHH
Confidence            999999999999999998 889999999999765442         35799999554 4457899999999999999999


Q ss_pred             CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH---HHHHc
Q 005958          320 RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC---LDALR  396 (667)
Q Consensus       320 G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa---~elL~  396 (667)
                      |..||...            +.......   ...       ...+.....+.++.+||.+||..||++||++   +++++
T Consensus       189 g~~p~~~~------------~~~~~~~~---~~~-------~~~~~~~~~~~~l~~~i~~~l~~~p~~R~~~~~~~~l~~  246 (250)
T cd05123         189 GKPPFYAE------------DRKEIYEK---ILK-------DPLRFPEFLSPEARDLISGLLQKDPTKRLGSGGAEEIKA  246 (250)
T ss_pred             CCCCCCCC------------CHHHHHHH---Hhc-------CCCCCCCCCCHHHHHHHHHHhcCCHhhCCCcccHHHHHh
Confidence            99998522            11111111   111       1123344557899999999999999999999   99999


Q ss_pred             CCCC
Q 005958          397 HPFL  400 (667)
Q Consensus       397 HPwf  400 (667)
                      ||||
T Consensus       247 ~~~f  250 (250)
T cd05123         247 HPFF  250 (250)
T ss_pred             CCCC
Confidence            9998

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=9.8e-35  Score=302.16  Aligned_cols=238  Identities=16%  Similarity=0.143  Sum_probs=180.3

Q ss_pred             EeccCCCCCCCceEEEEEEcCCC-------------------CCCCCcEEEEEEEcchhh--HHHHHHHHHHHHHHhhcc
Q 005958           93 RVSIGLSGRADEVVFEAIVKDSN-------------------SPLHNTKVVLRQLISVQA--QRRGRRAIEVLKKLVRRR  151 (667)
Q Consensus        93 ~LG~G~fG~~~~~Vy~a~~~~~~-------------------~~~tg~~vAvK~i~~~~~--~~~~~rEi~iL~~L~~~~  151 (667)
                      .||+|+||    .||+|.....+                   +......||+|++.....  ...+.+|+.+++.+    
T Consensus         2 ~lG~G~~~----~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l----   73 (274)
T cd05076           2 HLGQGTRT----NIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQV----   73 (274)
T ss_pred             CcCccccc----ceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcC----
Confidence            69999999    99999864321                   111235699999875322  23557788888888    


Q ss_pred             CCCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHH
Q 005958          152 LMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLR  231 (667)
Q Consensus       152 ~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~  231 (667)
                        .||||+++++++.     .....++||| |+++|+|..++.+..        ..+++                    .
T Consensus        74 --~h~niv~~~~~~~-----~~~~~~lv~e-y~~~g~L~~~l~~~~--------~~~~~--------------------~  117 (274)
T cd05076          74 --SHIHLAFVHGVCV-----RGSENIMVEE-FVEHGPLDVCLRKEK--------GRVPV--------------------A  117 (274)
T ss_pred             --CCCCeeeEEEEEE-----eCCceEEEEe-cCCCCcHHHHHHhcC--------CCCCH--------------------H
Confidence              4999999999998     7788999999 999999999987532        13343                    4


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCC------CCeEEEeeecccccccC-----CCCCCCCcccccCCCC
Q 005958          232 LIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPV------DRHIKVGILGNAADFYE-----DGPNNSSPDSNMDRRQ  300 (667)
Q Consensus       232 ~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~------~~~vKL~DFGlA~~~~~-----~~~~Y~APE~l~~~~~  300 (667)
                      .+..++.||+.||+|||++||+||||||+|||++..      ...+|++|||++.....     ....|+|||.+.+...
T Consensus       118 ~~~~i~~qi~~~l~~lH~~~iiH~dlkp~Nill~~~~~~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~aPe~~~~~~~  197 (274)
T cd05076         118 WKITVAQQLASALSYLEDKNLVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTALSREERVERIPWIAPECVPGGNS  197 (274)
T ss_pred             HHHHHHHHHHHHHHHHHcCCccCCCCCcccEEEeccCcccCccceeeecCCccccccccccccccCCcccCchhhcCCCC
Confidence            567799999999999999999999999999999751      12489999998864322     2367999997766677


Q ss_pred             CCchhhHHHHHHHHHHHH-hCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHH
Q 005958          301 MMIAFDMRCVGFMMAKMV-LRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSL  379 (667)
Q Consensus       301 ys~ksDIWSLGviLyeml-tG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~  379 (667)
                      ++.++|||||||++|||+ +|.+||..            ..+..........           .......++++.+||.+
T Consensus       198 ~~~~~Dv~slG~~l~el~~~g~~p~~~------------~~~~~~~~~~~~~-----------~~~~~~~~~~~~~li~~  254 (274)
T cd05076         198 LSTAADKWSFGTTLLEICFDGEVPLKE------------RTPSEKERFYEKK-----------HRLPEPSCKELATLISQ  254 (274)
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCccc------------cChHHHHHHHHhc-----------cCCCCCCChHHHHHHHH
Confidence            899999999999999995 68988852            1222222222111           01122345689999999


Q ss_pred             hhhcCcCCCCCHHHHHcC
Q 005958          380 LLATKPSKRISCLDALRH  397 (667)
Q Consensus       380 ~L~~DP~kRpSa~elL~H  397 (667)
                      ||+.||++|||+.++|++
T Consensus       255 cl~~~p~~Rps~~~il~~  272 (274)
T cd05076         255 CLTYEPTQRPSFRTILRD  272 (274)
T ss_pred             HcccChhhCcCHHHHHHh
Confidence            999999999999999875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-36  Score=305.29  Aligned_cols=266  Identities=21%  Similarity=0.278  Sum_probs=211.0

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ..+|.-++.+|.|+-.     |-.|.+..     ++++||+|++...    ...++..+|..++..+      +|+||++
T Consensus        16 ~~Ry~nL~p~~~g~~~-----v~~a~D~v-----~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v------~~~nii~   79 (369)
T KOG0665|consen   16 PKRYVNLKPIGSGAQI-----VVAAFDQV-----LGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCV------NHKNIIS   79 (369)
T ss_pred             eeeeeeecccCCCCce-----EEecchhh-----ccCceehhhhcCccccCccchhhhhhhhhhhhh------cccceee
Confidence            4678888999988764     66677776     8999999987642    2235678999999999      5999999


Q ss_pred             EEEEEEecc-cCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          161 VHGYVSSHT-TSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       161 l~~~~~~~~-~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++.+|.... ......+|+||| ++.. +|.+.+..           .++-                    ..++.+++|
T Consensus        80 l~n~ftP~~~l~~~~e~y~v~e-~m~~-nl~~vi~~-----------elDH--------------------~tis~i~yq  126 (369)
T KOG0665|consen   80 LLNVFTPQKTLEEFQEVYLVME-LMDA-NLCQVILM-----------ELDH--------------------ETISYILYQ  126 (369)
T ss_pred             eeeccCccccHHHHHhHHHHHH-hhhh-HHHHHHHH-----------hcch--------------------HHHHHHHHH
Confidence            999997321 124457899999 9999 99999873           3343                    357889999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      ++.|++|||+.||+||||||+||+++. ++.+||.|||+|+.-...        ..+|+|||++++.+ |.+.+||||+|
T Consensus       127 ~~~~ik~lhs~~IihRdLkPsnivv~~-~~~lKi~dfg~ar~e~~~~~mtpyVvtRyyrapevil~~~-~ke~vdiwSvG  204 (369)
T KOG0665|consen  127 MLCGIKHLHSAGIIHRDLKPSNIVVNS-DCTLKILDFGLARTEDTDFMMTPYVVTRYYRAPEVILGMG-YKENVDIWSVG  204 (369)
T ss_pred             HHHHHHHHHhcceeecccCcccceecc-hhheeeccchhhcccCcccccCchhheeeccCchheeccC-Ccccchhhhhh
Confidence            999999999999999999999999999 999999999999876655        26899999888777 99999999999


Q ss_pred             HHHHHHHhCCCCChh---hhhhhhhhhccCCChhHHHHHHHHH----hccCCCCCCCCc-------------ccccCCCH
Q 005958          312 FMMAKMVLRELMDPL---IFTKFKSFLTKGIDPSCLREFLLQV----LNRNSSSGNTGF-------------QILDRNWG  371 (667)
Q Consensus       312 viLyemltG~~PF~~---~~~~~~~~~~~g~~~~~l~~~~~~~----~~~~~~~~~~~~-------------~~~~~~s~  371 (667)
                      |++.||++|...|++   ++|..++....|++.......+...    ....+.+....+             ...+.-+.
T Consensus       205 ci~gEli~~~Vlf~g~d~idQ~~ki~~~lgtpd~~F~~qL~~~~r~yv~~~~~y~~~~f~~~fpD~~f~~~~e~~~~~~~  284 (369)
T KOG0665|consen  205 CIMGELILGTVLFPGKDHIDQWNKIIEQLGTPDPSFMKQLQPTVRNYVENRPQYQAISFSELFPDSLFPVVLEGSKLDCS  284 (369)
T ss_pred             hHHHHHhhceEEecCchHHHHHHHHHHHhcCCCHHHHHHhhHHHHHHhhcChHhhccchhhhCCcccccccccCCccchH
Confidence            999999999999995   6677888888998876554443322    111111111111             11122345


Q ss_pred             HHHHHHHHhhhcCcCCCCCHHHHHcCCCCC
Q 005958          372 AGWNLLSLLLATKPSKRISCLDALRHPFLC  401 (667)
Q Consensus       372 e~~dLI~~~L~~DP~kRpSa~elL~HPwf~  401 (667)
                      .++||+.+||..||++|.+++++|+||||+
T Consensus       285 ~ardll~~MLvi~pe~Risv~daL~HPY~~  314 (369)
T KOG0665|consen  285 LARDLLSKMLVIDPEKRISVDDALRHPYIK  314 (369)
T ss_pred             HHHHHHHHhhccChhhcccHHHHhcCCeee
Confidence            899999999999999999999999999998

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.7e-34  Score=300.06  Aligned_cols=245  Identities=14%  Similarity=0.127  Sum_probs=193.6

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      +..++|++.+.||+|+||    +||+|.++.++. .....||+|.+....   ....+.+|+.+++++.      ||||+
T Consensus         4 ~~~~~~~~~~~ig~g~~g----~v~~~~~~~~~~-~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~------h~~i~   72 (279)
T cd05057           4 LKETELEKIKVLGSGAFG----TVYKGVWIPEGE-KVKIPVAIKVLREETSPKANKEILDEAYVMASVD------HPHVV   72 (279)
T ss_pred             cCHHHcEEcceecCCCCc----cEEEEEEecCCC-CcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCC------CCCcc
Confidence            456889999999999999    999999876321 123469999887542   2345688999999994      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++.     . ...++||| |+.+|+|.+++....        ..+++                    ..+..++.|
T Consensus        73 ~~~~~~~-----~-~~~~~v~e-~~~~g~L~~~l~~~~--------~~~~~--------------------~~~~~~~~q  117 (279)
T cd05057          73 RLLGICL-----S-SQVQLITQ-LMPLGCLLDYVRNHK--------DNIGS--------------------QYLLNWCVQ  117 (279)
T ss_pred             eEEEEEe-----c-CceEEEEe-cCCCCcHHHHHHhcc--------CCCCH--------------------HHHHHHHHH
Confidence            9999987     4 68999999 999999999997643        13443                    457789999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-----------CCCCCcccccCCCCCCchhhHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-----------PNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-----------~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      |+.||+|||++||+||||||+||+++. ++.+||+|||.++......           ..|+|||.+ ....++.++|||
T Consensus       118 i~~~l~~LH~~~i~H~di~p~nil~~~-~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~-~~~~~~~~~Di~  195 (279)
T cd05057         118 IAKGMSYLEEKRLVHRDLAARNVLVKT-PQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESI-LHRIYTHKSDVW  195 (279)
T ss_pred             HHHHHHHHHhCCEEecccCcceEEEcC-CCeEEECCCcccccccCcccceecCCCcccccccCHHHh-hcCCcCchhhHH
Confidence            999999999999999999999999998 8899999999997654322           359999955 455689999999


Q ss_pred             HHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          309 CVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       309 SLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      ||||++|||++ |++||.            +.....+...+..   .      ...+.....+.++.+++.+||..||++
T Consensus       196 slG~~l~el~~~g~~p~~------------~~~~~~~~~~~~~---~------~~~~~~~~~~~~~~~~~~~~l~~~p~~  254 (279)
T cd05057         196 SYGVTVWELMTFGAKPYE------------GIPAVEIPDLLEK---G------ERLPQPPICTIDVYMVLVKCWMIDAES  254 (279)
T ss_pred             HHHHHHHHHhcCCCCCCC------------CCCHHHHHHHHhC---C------CCCCCCCCCCHHHHHHHHHHcCCChhh
Confidence            99999999998 999984            2233333333221   1      112233456789999999999999999


Q ss_pred             CCCHHHHHc
Q 005958          388 RISCLDALR  396 (667)
Q Consensus       388 RpSa~elL~  396 (667)
                      ||++.++++
T Consensus       255 Rp~~~~l~~  263 (279)
T cd05057         255 RPTFKELIN  263 (279)
T ss_pred             CCCHHHHHH
Confidence            999999864

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=100.00  E-value=7.4e-35  Score=308.19  Aligned_cols=248  Identities=21%  Similarity=0.214  Sum_probs=196.0

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-----hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ..|+..+.||.|+||    .||+|++..     +++.||+|.+...     .....+.+|+++++.++      |+||++
T Consensus        15 ~~~~~~~~lg~g~~g----~v~~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~   79 (308)
T cd06634          15 KLFSDLREIGHGSFG----AVYFARDVR-----NSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLR------HPNTIQ   79 (308)
T ss_pred             HHHHHHHheeeCCCE----EEEEEEEcC-----CCcEEEEEEEecccccChHHHHHHHHHHHHHHhCC------CCCccc
Confidence            458888999999999    999999987     7899999998642     12245678999999994      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     .....++||| |+.+ +|.+++....        ..+++                    ..+..++.|+
T Consensus        80 ~~~~~~-----~~~~~~lv~e-~~~~-~l~~~~~~~~--------~~l~~--------------------~~~~~~~~~l  124 (308)
T cd06634          80 YRGCYL-----REHTAWLVME-YCLG-SASDLLEVHK--------KPLQE--------------------VEIAAVTHGA  124 (308)
T ss_pred             EEEEEE-----cCCeeEEEEE-ccCC-CHHHHHHHcC--------CCCCH--------------------HHHHHHHHHH
Confidence            999998     7788999999 9875 8988876432        13443                    4567899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----CCCCCCccccc--CCCCCCchhhHHHHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----GPNNSSPDSNM--DRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----~~~Y~APE~l~--~~~~ys~ksDIWSLGvi  313 (667)
                      +.||.|||++|++||||||+||+++. ++.+||+|||++......     .+.|+|||.+.  ....++.++|||||||+
T Consensus       125 ~~~l~~LH~~~i~H~dl~p~nil~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~i  203 (308)
T cd06634         125 LQGLAYLHSHNMIHRDVKAGNILLSE-PGLVKLGDFGSASIMAPANXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGIT  203 (308)
T ss_pred             HHHHHHHHhCCcccCCCCHHhEEECC-CCcEEECCcccceeecCcccccCCccccCHHHHhhcccCCCCcccchHHHHHH
Confidence            99999999999999999999999998 899999999998765433     36799999764  33557889999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      +|+|++|..||.....           ........    ....+     .......+..+.+||.+||..+|++||++++
T Consensus       204 l~el~~g~~p~~~~~~-----------~~~~~~~~----~~~~~-----~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~  263 (308)
T cd06634         204 CIELAERKPPLFNMNA-----------MSALYHIA----QNESP-----ALQSGHWSEYFRNFVDSCLQKIPQDRPTSEV  263 (308)
T ss_pred             HHHHHcCCCCCccccH-----------HHHHHHHh----hcCCC-----CcCcccccHHHHHHHHHHhhCCcccCCCHHH
Confidence            9999999999853211           01111111    11000     0112346778999999999999999999999


Q ss_pred             HHcCCCCCCCC
Q 005958          394 ALRHPFLCGPR  404 (667)
Q Consensus       394 lL~HPwf~~~~  404 (667)
                      +++|||+....
T Consensus       264 ll~~~~~~~~~  274 (308)
T cd06634         264 LLKHRFVLRER  274 (308)
T ss_pred             HhhCccccccC
Confidence            99999998854

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=100.00  E-value=1.8e-34  Score=294.06  Aligned_cols=232  Identities=15%  Similarity=0.158  Sum_probs=183.5

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEec
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSH  168 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~  168 (667)
                      +.||+|+||    .||+|...      ++..||+|.+....   ....+.+|+++++.+      .||||+++++++.  
T Consensus         1 ~~ig~g~~g----~vy~~~~~------~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~--   62 (250)
T cd05085           1 ELLGKGNFG----EVFKGTLK------DKTPVAVKTCKEDLPQELKIKFLSEARILKQY------DHPNIVKLIGVCT--   62 (250)
T ss_pred             CccCCCCCc----eEEEEEec------CCcEEEEEecCCcCCHHHHHHHHHHHHHHHhC------CCCCcCeEEEEEe--
Confidence            468999999    99999865      47899999987532   234568899999999      4999999999998  


Q ss_pred             ccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 005958          169 TTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLH  248 (667)
Q Consensus       169 ~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLH  248 (667)
                         ..+..++||| |+++|+|.+++....        ..+++                    ..+..++.|++.||.|||
T Consensus        63 ---~~~~~~lv~e-~~~~~~L~~~~~~~~--------~~~~~--------------------~~~~~~~~~i~~~l~~lH  110 (250)
T cd05085          63 ---QRQPIYIVME-LVPGGDFLSFLRKKK--------DELKT--------------------KQLVKFALDAAAGMAYLE  110 (250)
T ss_pred             ---cCCccEEEEE-CCCCCcHHHHHHhcC--------CCCCH--------------------HHHHHHHHHHHHHHHHHH
Confidence               6778999999 999999999987532        12343                    456779999999999999


Q ss_pred             HCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC----------CCCCCCcccccCCCCCCchhhHHHHHHHHHHHH
Q 005958          249 SHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED----------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMV  318 (667)
Q Consensus       249 s~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~----------~~~Y~APE~l~~~~~ys~ksDIWSLGviLyeml  318 (667)
                      ++|++||||||+||+++. ++.+||+|||++......          ...|+|||.+ ....++.++|||||||++|+|+
T Consensus       111 ~~~~~H~dl~p~nili~~-~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~ll~~~~  188 (250)
T cd05085         111 SKNCIHRDLAARNCLVGE-NNVLKISDFGMSRQEDDGIYSSSGLKQIPIKWTAPEAL-NYGRYSSESDVWSYGILLWETF  188 (250)
T ss_pred             hCCeeecccChheEEEcC-CCeEEECCCccceeccccccccCCCCCCcccccCHHHh-ccCCCCchhHHHHHHHHHHHHh
Confidence            999999999999999998 899999999998654321          1459999955 4556899999999999999999


Q ss_pred             h-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHc
Q 005958          319 L-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALR  396 (667)
Q Consensus       319 t-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~  396 (667)
                      + |..||+..            ........+.   ...      .......++.++.+|+.+||..||++||++.++++
T Consensus       189 ~~g~~p~~~~------------~~~~~~~~~~---~~~------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  246 (250)
T cd05085         189 SLGVCPYPGM------------TNQQAREQVE---KGY------RMSCPQKCPDDVYKVMQRCWDYKPENRPKFSELQK  246 (250)
T ss_pred             cCCCCCCCCC------------CHHHHHHHHH---cCC------CCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHH
Confidence            8 99998522            1111111111   110      11223456789999999999999999999999976

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=100.00  E-value=1.9e-34  Score=298.03  Aligned_cols=244  Identities=15%  Similarity=0.169  Sum_probs=180.4

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEec
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSH  168 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~  168 (667)
                      +.||+|+||    .||+|......   ++..+|+|.+....   ....+.+|+.+++.++      ||||+++++++.  
T Consensus         1 ~~lg~G~~g----~Vy~~~~~~~~---~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~------h~~iv~~~~~~~--   65 (269)
T cd05087           1 KEIGNGWFG----KVILGEVNSGY---TPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQ------HSNLLQCLGQCT--   65 (269)
T ss_pred             CcccccCCc----eEEEEEEcCCC---CceEEEEEecCCCCChHHHHHHHHHHHHHHhCC------CCCEeeEEEEEc--
Confidence            468999999    99999875421   56789999987532   2345688999999995      999999999998  


Q ss_pred             ccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 005958          169 TTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLH  248 (667)
Q Consensus       169 ~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLH  248 (667)
                         +....++||| |+++|+|.+++........    ..++                    ...++.++.|++.||+|||
T Consensus        66 ---~~~~~~lv~e-~~~~g~L~~~l~~~~~~~~----~~~~--------------------~~~~~~~~~qi~~al~~lH  117 (269)
T cd05087          66 ---EVTPYLLVME-FCPLGDLKGYLRSCRKAEL----MTPD--------------------PTTLQRMACEIALGLLHLH  117 (269)
T ss_pred             ---CCCCcEEEEE-CCCCCcHHHHHHHhhhccc----cccc--------------------HHHHHHHHHHHHHHHHHHH
Confidence               6678999999 9999999999976431100    0112                    2456789999999999999


Q ss_pred             HCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCC------CCCCchhhHHHHH
Q 005958          249 SHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDR------RQMMIAFDMRCVG  311 (667)
Q Consensus       249 s~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~------~~ys~ksDIWSLG  311 (667)
                      ++|++||||||+||+++. ++.+||+|||++......           ...|+|||++...      ..++.++||||||
T Consensus       118 ~~~i~H~dlkp~nil~~~-~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG  196 (269)
T cd05087         118 KNNFIHSDLALRNCLLTA-DLTVKIGDYGLSHNKYKEDYYVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLG  196 (269)
T ss_pred             HCCEeccccCcceEEEcC-CCcEEECCccccccccCcceeecCCCcCCcccccCHhHhccccccccccCCCccchhHHHH
Confidence            999999999999999998 899999999998643221           2459999966432      2367899999999


Q ss_pred             HHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          312 FMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       312 viLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      |++|||++ |.+||+...            ..+.....  ........  .........++.+.+++.+|+ .+|++|||
T Consensus       197 ~~l~el~~~g~~p~~~~~------------~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~l~~~c~-~~P~~Rpt  259 (269)
T cd05087         197 VTIWELFELGSQPYRHLS------------DEQVLTYT--VREQQLKL--PKPRLKLPLSDRWYEVMQFCW-LQPEQRPS  259 (269)
T ss_pred             HHHHHHHhCCCCCCCCCC------------hHHHHHHH--hhcccCCC--CCCccCCCCChHHHHHHHHHh-cCcccCCC
Confidence            99999996 999985221            11111111  11110000  011112245778999999998 68999999


Q ss_pred             HHHHHc
Q 005958          391 CLDALR  396 (667)
Q Consensus       391 a~elL~  396 (667)
                      +++++.
T Consensus       260 ~~~l~~  265 (269)
T cd05087         260 AEEVHL  265 (269)
T ss_pred             HHHHHH
Confidence            999874

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=100.00  E-value=1.9e-34  Score=299.51  Aligned_cols=254  Identities=15%  Similarity=0.153  Sum_probs=195.2

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      +..++|++.+.||+|+||    .||+|.+.... ..++..||+|.+...   ...+.+.+|+.+++++.      ||||+
T Consensus         3 ~~~~~~~~~~~i~~g~~g----~V~~~~~~~~~-~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~------h~ni~   71 (280)
T cd05043           3 ISRDRVTLSDLLQEGTFG----RIFYGILIDEK-PGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLS------HQNIL   71 (280)
T ss_pred             cchhheEEeeeecccCCc----eEEEEEEecCC-CCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCC------CCCCC
Confidence            455889999999999999    99999988521 224688999998753   22345688999999994      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++..    .....++++| |+++|+|.+++........                     .....++...+..++.|
T Consensus        72 ~~~~~~~~----~~~~~~~~~~-~~~~~~L~~~l~~~~~~~~---------------------~~~~~l~~~~~~~i~~~  125 (280)
T cd05043          72 PILHVCIE----DGEPPFVLYP-YMNWGNLKLFLQQCRLGEA---------------------NNPQALSTQQLVHMAIQ  125 (280)
T ss_pred             eEEEEEec----CCCCCEEEEE-cCCCCcHHHHHHhcccccc---------------------ccccCCCHHHHHHHHHH
Confidence            99998761    3567899999 9999999999976431100                     00112334667889999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhhHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      |+.||+|||++||+||||||+||+++. ++.+||+|||+++.+...           ...|+|||.+. ...++.++|||
T Consensus       126 i~~~l~~LH~~~i~H~di~p~nil~~~-~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~-~~~~~~~~Di~  203 (280)
T cd05043         126 IACGMSYLHKRGVIHKDIAARNCVIDE-ELQVKITDNALSRDLFPMDYHCLGDNENRPVKWMALESLV-NKEYSSASDVW  203 (280)
T ss_pred             HHHHHHHHHHCCEeecccCHhhEEEcC-CCcEEECCCCCcccccCCceEEeCCCCCcchhccCHHHHh-cCCCCchhhHH
Confidence            999999999999999999999999998 899999999999865322           13599999654 45589999999


Q ss_pred             HHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          309 CVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       309 SLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      ||||++|||++ |++||..            ..+..+...+....         .......+++++.+++.+||..||++
T Consensus       204 slG~~l~el~~~g~~p~~~------------~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~li~~~l~~~p~~  262 (280)
T cd05043         204 SFGVLLWELMTLGQTPYVE------------IDPFEMAAYLKDGY---------RLAQPINCPDELFAVMACCWALDPEE  262 (280)
T ss_pred             HhHHHHHHHhcCCCCCcCc------------CCHHHHHHHHHcCC---------CCCCCCcCCHHHHHHHHHHcCCChhh
Confidence            99999999998 9999852            22222222222110         11222346789999999999999999


Q ss_pred             CCCHHHHHc
Q 005958          388 RISCLDALR  396 (667)
Q Consensus       388 RpSa~elL~  396 (667)
                      |||+.++++
T Consensus       263 Rps~~~~~~  271 (280)
T cd05043         263 RPSFSQLVQ  271 (280)
T ss_pred             CCCHHHHHH
Confidence            999999985

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=100.00  E-value=1.8e-34  Score=294.18  Aligned_cols=242  Identities=17%  Similarity=0.223  Sum_probs=191.9

Q ss_pred             eEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEEEEE
Q 005958           88 FKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGY  164 (667)
Q Consensus        88 y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~  164 (667)
                      +++.+.||.|+||    .||+|.+...+. ..+..||+|.+....   ..+.+.+|+.+++.+      +|+||++++++
T Consensus         1 ~~~~~~lg~g~~g----~v~~~~~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~   69 (258)
T smart00219        1 LTLGKKLGEGAFG----EVYKGTLKGLSG-EKEVEVAVKTLKEDADEQQIEEFLREARIMRKL------DHPNIVKLLGV   69 (258)
T ss_pred             CcccceeccCCCc----ceEEEEecCCCC-CCCceEEEEEccCCCChHHHHHHHHHHHHHHhc------CCCchheEEEE
Confidence            4578899999999    999999987211 124899999997643   345678899999999      49999999999


Q ss_pred             EEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHH
Q 005958          165 VSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGV  244 (667)
Q Consensus       165 ~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL  244 (667)
                      +.     ..+..+++|| |+++++|.+++.....       ..+++                    ..+..++.||+.||
T Consensus        70 ~~-----~~~~~~~i~e-~~~~~~l~~~~~~~~~-------~~~~~--------------------~~~~~~~~ql~~~l  116 (258)
T smart00219       70 CT-----EEEPLMIVME-YMEGGDLLDYLRKNRP-------KELSL--------------------SDLLSFALQIARGM  116 (258)
T ss_pred             Ec-----CCCeeEEEEe-ccCCCCHHHHHHhhhh-------ccCCH--------------------HHHHHHHHHHHHHH
Confidence            98     6789999999 9999999999986431       01443                    56788999999999


Q ss_pred             HHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC----------CCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          245 NYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED----------GPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       245 ~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~----------~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      .|||++|++|+||||+||+++. ++.++|+|||++......          ...|+|||.+ ....++.++||||+||++
T Consensus       117 ~~lh~~~~~h~dl~~~nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~-~~~~~~~~~Di~slG~i~  194 (258)
T smart00219      117 EYLESKNFIHRDLAARNCLVGE-NLVVKISDFGLSRDLYDDDYYKKKGGKLPIRWMAPESL-KDGKFTSKSDVWSFGVLL  194 (258)
T ss_pred             HHHhcCCeeecccccceEEEcc-CCeEEEcccCCceecccccccccccCCCcccccChHHh-ccCCCCcchhHHHHHHHH
Confidence            9999999999999999999998 889999999999755432          2579999955 556689999999999999


Q ss_pred             HHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          315 AKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       315 yemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      |+|++ |.+||..            .......+.+.   ...      ........+.++.+++.+||..||++|||+.|
T Consensus       195 ~~l~~~g~~p~~~------------~~~~~~~~~~~---~~~------~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~  253 (258)
T smart00219      195 WEIFTLGESPYPG------------MSNEEVLEYLK---KGY------RLPKPENCPPEIYKLMLQCWAEDPEDRPTFSE  253 (258)
T ss_pred             HHHHhCCCCCCCC------------CCHHHHHHHHh---cCC------CCCCCCcCCHHHHHHHHHHCcCChhhCcCHHH
Confidence            99998 7888742            12222222211   111      11223347889999999999999999999999


Q ss_pred             HHc
Q 005958          394 ALR  396 (667)
Q Consensus       394 lL~  396 (667)
                      +++
T Consensus       254 ll~  256 (258)
T smart00219      254 LVE  256 (258)
T ss_pred             HHh
Confidence            986

Phosphotransferases. Tyrosine-specific kinase subfamily.

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-35  Score=329.47  Aligned_cols=257  Identities=17%  Similarity=0.205  Sum_probs=217.2

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-hhHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      .+-|++.+.||.|.+|    .||+++++.     +++..|+|++... ..++++.-|.++|+.+.     +|||++.+|+
T Consensus        18 ~d~~ei~evig~Gtyg----kv~k~k~~~-----~~~~aa~kI~~~~~d~deEiE~eynil~~~~-----~hpnv~~fyg   83 (953)
T KOG0587|consen   18 ADIFEIIEVIGNGTYG----KVYKGRHVK-----TGQLAAIKIMDPTEDEEEEIELEYNMLKKYS-----HHPNVATFYG   83 (953)
T ss_pred             CCccEEEEEEeeccce----eEEEEeeee-----cCceeeeEeecCCccccHHHHHHHHHHHhcc-----CCCCcceEEE
Confidence            3679999999999999    999999998     8999999998863 34567788999999998     8999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      +|.......++.+||||| ||++|+.-|+++...       +.++.|                    ..|..|++.++.|
T Consensus        84 ~~~k~~~~~~DqLWLVME-fC~gGSVTDLVKn~~-------g~rl~E--------------------~~IaYI~re~lrg  135 (953)
T KOG0587|consen   84 AFIKKDPGNGDQLWLVME-FCGGGSVTDLVKNTK-------GNRLKE--------------------EWIAYILREILRG  135 (953)
T ss_pred             EEEEecCCCCCeEEEEee-ccCCccHHHHHhhhc-------ccchhh--------------------HHHHHHHHHHHHH
Confidence            997555568889999999 999999999998742       234554                    5799999999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCC----CCCchhhHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRR----QMMIAFDMRCV  310 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~----~ys~ksDIWSL  310 (667)
                      |.+||.+.++|||||-.|||++. ++.|||+|||++..+...         .|+|||||++....    .|+..+|+|||
T Consensus       136 l~HLH~nkviHRDikG~NiLLT~-e~~VKLvDFGvSaQldsT~grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsL  214 (953)
T KOG0587|consen  136 LAHLHNNKVIHRDIKGQNVLLTE-NAEVKLVDFGVSAQLDSTVGRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSL  214 (953)
T ss_pred             HHHHhhcceeeecccCceEEEec-cCcEEEeeeeeeeeeecccccccCcCCCcccccceeeecccCCCCCcccccchhhc
Confidence            99999999999999999999999 999999999999876543         49999999876433    46779999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      |++..||.-|.||+-+...+-..|...-+++-.                   +..+...+.++.|||..||.+|-++||+
T Consensus       215 GITaIEladG~PPl~DmHPmraLF~IpRNPPPk-------------------Lkrp~kWs~~FndFIs~cL~Kd~e~RP~  275 (953)
T KOG0587|consen  215 GITAIEMAEGAPPLCDMHPMRALFLIPRNPPPK-------------------LKRPKKWSKKFNDFISTCLVKDYEQRPS  275 (953)
T ss_pred             cceeehhcCCCCCccCcchhhhhccCCCCCCcc-------------------ccchhhHHHHHHHHHHHHHhhccccCcc
Confidence            999999999999987655554444444433322                   2234566789999999999999999999


Q ss_pred             HHHHHcCCCCCCC
Q 005958          391 CLDALRHPFLCGP  403 (667)
Q Consensus       391 a~elL~HPwf~~~  403 (667)
                      ..++|+|||+.+.
T Consensus       276 ~~~ll~hpFi~e~  288 (953)
T KOG0587|consen  276 TEELLKHPFITEQ  288 (953)
T ss_pred             hhhhccCCccccc
Confidence            9999999999843

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=100.00  E-value=1.9e-34  Score=298.02  Aligned_cols=245  Identities=16%  Similarity=0.184  Sum_probs=190.7

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      +..++|.+.+.||+|+||    .||+|.+....  .....||||.....   ...+.+.+|+.+++.+.      ||||+
T Consensus         3 ~~~~~~~~~~~lg~g~~g----~v~~~~~~~~~--~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~------h~~i~   70 (270)
T cd05056           3 IQREDITLGRCIGEGQFG----DVYQGVYMSPE--NEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFD------HPHIV   70 (270)
T ss_pred             echhhceeeeeeCCccce----eEEEEEEecCC--CCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCC------CCchh
Confidence            345679999999999999    99999986521  13457999998753   23346788999999994      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++.     + ...|+||| |+++|+|.+++....        ..+++                    ..+..++.|
T Consensus        71 ~~~~~~~-----~-~~~~lv~e-~~~~~~L~~~l~~~~--------~~~~~--------------------~~~~~~~~~  115 (270)
T cd05056          71 KLIGVIT-----E-NPVWIVME-LAPLGELRSYLQVNK--------YSLDL--------------------ASLILYSYQ  115 (270)
T ss_pred             ceeEEEc-----C-CCcEEEEE-cCCCCcHHHHHHhCC--------CCCCH--------------------HHHHHHHHH
Confidence            9999886     3 45789999 999999999997642        12333                    457789999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC----------CCCCCcccccCCCCCCchhhHHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG----------PNNSSPDSNMDRRQMMIAFDMRC  309 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~----------~~Y~APE~l~~~~~ys~ksDIWS  309 (667)
                      |+.||+|||++|++|+||||+||+++. ++.+||+|||++.......          ..|+|||.+ ....++.++||||
T Consensus       116 l~~~l~~lH~~~~~H~dl~p~nili~~-~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~s  193 (270)
T cd05056         116 LSTALAYLESKRFVHRDIAARNVLVSS-PDCVKLGDFGLSRYLEDESYYKASKGKLPIKWMAPESI-NFRRFTSASDVWM  193 (270)
T ss_pred             HHHHHHHHHhCCeeccccChheEEEec-CCCeEEccCceeeecccccceecCCCCccccccChhhh-ccCCCCchhhhHH
Confidence            999999999999999999999999998 8999999999987543221          469999954 4556899999999


Q ss_pred             HHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCC
Q 005958          310 VGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  388 (667)
Q Consensus       310 LGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kR  388 (667)
                      |||++|||++ |.+||...            ........+.   ..      ...+....+++++.+||.+||..+|++|
T Consensus       194 lG~il~el~~~g~~pf~~~------------~~~~~~~~~~---~~------~~~~~~~~~~~~~~~li~~~l~~~P~~R  252 (270)
T cd05056         194 FGVCMWEILMLGVKPFQGV------------KNNDVIGRIE---NG------ERLPMPPNCPPTLYSLMTKCWAYDPSKR  252 (270)
T ss_pred             HHHHHHHHHHcCCCCCCCC------------CHHHHHHHHH---cC------CcCCCCCCCCHHHHHHHHHHcCCChhhC
Confidence            9999999996 99998522            1111111111   11      1122345678899999999999999999


Q ss_pred             CCHHHHHcC
Q 005958          389 ISCLDALRH  397 (667)
Q Consensus       389 pSa~elL~H  397 (667)
                      ||+.+++..
T Consensus       253 pt~~~~~~~  261 (270)
T cd05056         253 PRFTELKAQ  261 (270)
T ss_pred             cCHHHHHHH
Confidence            999998763

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=1.4e-34  Score=295.89  Aligned_cols=236  Identities=17%  Similarity=0.167  Sum_probs=180.5

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCC-----CCCCcEEEEEEEcchhh-HHHHHHHHHHHHHHhhccCCCCCcceEEEEEE
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNS-----PLHNTKVVLRQLISVQA-QRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYV  165 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~-----~~tg~~vAvK~i~~~~~-~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~  165 (667)
                      +.||+|+||    .||+|.+...+.     ......+++|.+..... ...+.+|+.+++.+.      ||||+++++++
T Consensus         1 ~~lg~G~~~----~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~~~~~~   70 (259)
T cd05037           1 EHLGQGTFT----NIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLMSQLS------HKHLVKLYGVC   70 (259)
T ss_pred             Ccccccccc----eEEEEEEeccCCccccCCccceeeeeeccccchhhHHHHHHHHHHHHcCC------CcchhheeeEE
Confidence            468999999    999999987320     11124688888765433 456788999999994      99999999999


Q ss_pred             EecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHH
Q 005958          166 SSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVN  245 (667)
Q Consensus       166 ~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~  245 (667)
                      .     . ...++||| |+++|+|.+++.....        .++                    ...+..++.||+.||+
T Consensus        71 ~-----~-~~~~lv~e-~~~~~~L~~~l~~~~~--------~~~--------------------~~~~~~~~~~i~~~l~  115 (259)
T cd05037          71 V-----R-DENIMVEE-YVKFGPLDVFLHREKN--------NVS--------------------LHWKLDVAKQLASALH  115 (259)
T ss_pred             e-----c-CCcEEEEE-cCCCCcHHHHHHhhcc--------CCC--------------------HHHHHHHHHHHHHHHH
Confidence            8     5 66899999 9999999999986431        233                    2457789999999999


Q ss_pred             HHHHCCCcccCCCCCcEEEcCCCC-------eEEEeeecccccccC-----CCCCCCCcccccCC-CCCCchhhHHHHHH
Q 005958          246 YLHSHGLAHTELRLENVHISPVDR-------HIKVGILGNAADFYE-----DGPNNSSPDSNMDR-RQMMIAFDMRCVGF  312 (667)
Q Consensus       246 yLHs~gIvHrDLKPeNILl~~~~~-------~vKL~DFGlA~~~~~-----~~~~Y~APE~l~~~-~~ys~ksDIWSLGv  312 (667)
                      |||++||+||||||+|||++. ++       .+||+|||++.....     ....|+|||.+... ..++.++|||||||
T Consensus       116 ~LH~~~i~H~dlkp~Nill~~-~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~  194 (259)
T cd05037         116 YLEDKKLVHGNVCGKNILVAR-YGLNEGYVPFIKLSDPGIPITVLSREERVERIPWIAPECIRNGQASLTIAADKWSFGT  194 (259)
T ss_pred             HHhhCCeecccCccceEEEec-CccccCCceeEEeCCCCcccccccccccccCCCccChhhhcCCCCCcchhhHHHHHHH
Confidence            999999999999999999997 55       799999999987443     33679999976554 47899999999999


Q ss_pred             HHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH
Q 005958          313 MMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC  391 (667)
Q Consensus       313 iLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa  391 (667)
                      ++|||++ |..||....            .........    ...       ........++.+||.+||..||++|||+
T Consensus       195 ~~~~l~~~~~~p~~~~~------------~~~~~~~~~----~~~-------~~~~~~~~~~~~li~~~l~~~p~~Rpt~  251 (259)
T cd05037         195 TLLEICSNGEEPLSTLS------------SSEKERFYQ----DQH-------RLPMPDCAELANLINQCWTYDPTKRPSF  251 (259)
T ss_pred             HHHHHHhCCCCCcccCC------------chhHHHHHh----cCC-------CCCCCCchHHHHHHHHHhccChhhCCCH
Confidence            9999999 577764211            111111111    000       0011123789999999999999999999


Q ss_pred             HHHHc
Q 005958          392 LDALR  396 (667)
Q Consensus       392 ~elL~  396 (667)
                      .++++
T Consensus       252 ~~il~  256 (259)
T cd05037         252 RAILR  256 (259)
T ss_pred             HHHHH
Confidence            99986

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=1.2e-34  Score=300.41  Aligned_cols=260  Identities=20%  Similarity=0.225  Sum_probs=195.2

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh---HHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA---QRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~---~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ..+|++.+.||+|+||    .||+|...... ..+++.||||.+.....   .+.+.+|+++++.+.      ||||+++
T Consensus         3 ~~~~~~~~~ig~g~~~----~v~~~~~~~~~-~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~------~~~i~~~   71 (284)
T cd05038           3 KRHLKFIKQLGEGHFG----KVELCRYDPLG-DNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLD------HENIVKY   71 (284)
T ss_pred             hhhchhheeeccCCCe----eEEEeeecCCC-CCCceEEEEEEeccccchHHHHHHHHHHHHHHhCC------CCChheE
Confidence            3678899999999999    99999976421 12588999999986433   456789999999994      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++...   .....++||| |+++++|.+++.....        .+++                    ..+..++.||+
T Consensus        72 ~~~~~~~---~~~~~~lv~e-~~~~~~l~~~l~~~~~--------~~~~--------------------~~~~~~~~~l~  119 (284)
T cd05038          72 KGVCEKP---GGRSLRLIME-YLPSGSLRDYLQRHRD--------QINL--------------------KRLLLFSSQIC  119 (284)
T ss_pred             EeeeecC---CCCceEEEEe-cCCCCCHHHHHHhCcc--------ccCH--------------------HHHHHHHHHHH
Confidence            9998733   4678999999 9999999999976431        2333                    45788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC------------CCCCCCcccccCCCCCCchhhHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED------------GPNNSSPDSNMDRRQMMIAFDMRC  309 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------------~~~Y~APE~l~~~~~ys~ksDIWS  309 (667)
                      .||+|||++||+|+||||+||+++. ++.++|+|||.+......            ...|+|||.+. ...++.++||||
T Consensus       120 ~aL~~lH~~~i~H~dl~p~nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~-~~~~~~~~Di~s  197 (284)
T cd05038         120 KGMDYLGSQRYIHRDLAARNILVES-EDLVKISDFGLAKVLPEDKDYYYVKEPGESPIFWYAPECLR-TSKFSSASDVWS  197 (284)
T ss_pred             HHHHHHHhCCeecCCCCHHhEEEcC-CCCEEEcccccccccccCCcceeccCCCCCcccccCcHHHc-cCCCCcccchHH
Confidence            9999999999999999999999998 899999999999876521            13589999554 446899999999


Q ss_pred             HHHHHHHHHhCCCCChhhhhhhhhhhccCCCh-hHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCC
Q 005958          310 VGFMMAKMVLRELMDPLIFTKFKSFLTKGIDP-SCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  388 (667)
Q Consensus       310 LGviLyemltG~~PF~~~~~~~~~~~~~g~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kR  388 (667)
                      |||++|||++|..||.........  ..+... ......+...+....     ..+....++.++.+|+.+||..||++|
T Consensus       198 lG~~l~el~tg~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~li~~cl~~~p~~R  270 (284)
T cd05038         198 FGVTLYELFTYGDPSQSPPAEFLR--MIGIAQGQMIVTRLLELLKEGE-----RLPRPPSCPDEVYDLMKLCWEAEPQDR  270 (284)
T ss_pred             HhhhhheeeccCCCcccccchhcc--ccccccccccHHHHHHHHHcCC-----cCCCCccCCHHHHHHHHHHhccChhhC
Confidence            999999999999887532111100  001000 001111111111111     122234556899999999999999999


Q ss_pred             CCHHHHHc
Q 005958          389 ISCLDALR  396 (667)
Q Consensus       389 pSa~elL~  396 (667)
                      ||+.|+++
T Consensus       271 pt~~ei~~  278 (284)
T cd05038         271 PSFADLIL  278 (284)
T ss_pred             CCHHHHHH
Confidence            99999985

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=100.00  E-value=3.1e-34  Score=294.47  Aligned_cols=237  Identities=15%  Similarity=0.193  Sum_probs=179.6

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEec
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSH  168 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~  168 (667)
                      +.||+|+||    .||+|.+....  .....||+|.+...   ...+.+.+|+.+++.+      +||||+++++++.. 
T Consensus         1 ~~lg~g~~g----~v~~~~~~~~~--~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~~-   67 (262)
T cd05058           1 RVIGKGHFG----CVYHGTLIDSD--GQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDF------SHPNVLSLLGICLP-   67 (262)
T ss_pred             CcccccCCc----eEEEEEEecCC--CceEEEEEEecCccCCHHHHHHHHHHHHHHccC------CCCCcceEEEEeec-
Confidence            468999999    99999976421  14578999998542   2334567899999988      49999999997752 


Q ss_pred             ccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 005958          169 TTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLH  248 (667)
Q Consensus       169 ~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLH  248 (667)
                         .++..++||| |+.+|+|.+++.....        .++                    ...+..++.||+.||+|||
T Consensus        68 ---~~~~~~lv~e-~~~~~~L~~~~~~~~~--------~~~--------------------~~~~~~~~~~i~~~l~~lH  115 (262)
T cd05058          68 ---SEGSPLVVLP-YMKHGDLRNFIRSETH--------NPT--------------------VKDLIGFGLQVAKGMEYLA  115 (262)
T ss_pred             ---CCCCcEEEEe-cCCCCCHHHHHHhcCC--------CCC--------------------HHHHHHHHHHHHHHHHHHH
Confidence               3456889999 9999999999976421        122                    2346778999999999999


Q ss_pred             HCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-------------CCCCCCcccccCCCCCCchhhHHHHHHHHH
Q 005958          249 SHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-------------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMA  315 (667)
Q Consensus       249 s~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-------------~~~Y~APE~l~~~~~ys~ksDIWSLGviLy  315 (667)
                      +.||+||||||+|||++. ++.+||+|||+++.....             ...|+|||.+. ...++.++|||||||++|
T Consensus       116 ~~~i~H~dlk~~nili~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~slG~~l~  193 (262)
T cd05058         116 SKKFVHRDLAARNCMLDE-SFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMALESLQ-TQKFTTKSDVWSFGVLLW  193 (262)
T ss_pred             hCCccccccCcceEEEcC-CCcEEECCccccccccCCcceeecccccCcCCccccChhHhc-cCccchHHHHHHHHHHHH
Confidence            999999999999999998 889999999999754321             24699999554 456899999999999999


Q ss_pred             HHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHH
Q 005958          316 KMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDA  394 (667)
Q Consensus       316 emlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~el  394 (667)
                      ||++ |.+||...            ....+...+   ....      ........++.+.+++.+||..+|++||++.++
T Consensus       194 el~~~~~~~~~~~------------~~~~~~~~~---~~~~------~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i  252 (262)
T cd05058         194 ELMTRGAPPYPDV------------DSFDITVYL---LQGR------RLLQPEYCPDPLYEVMLSCWHPKPEMRPTFSEL  252 (262)
T ss_pred             HHHcCCCCCCCCC------------CHHHHHHHH---hcCC------CCCCCCcCCHHHHHHHHHHcCCChhhCCCHHHH
Confidence            9999 56666421            122222221   1111      111223457789999999999999999999999


Q ss_pred             Hc
Q 005958          395 LR  396 (667)
Q Consensus       395 L~  396 (667)
                      ++
T Consensus       253 l~  254 (262)
T cd05058         253 VS  254 (262)
T ss_pred             HH
Confidence            86

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=100.00  E-value=4e-34  Score=291.76  Aligned_cols=232  Identities=17%  Similarity=0.187  Sum_probs=184.5

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEec
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSH  168 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~  168 (667)
                      ++||.|+||    .||+|.+..      ++.||+|.+....   ....+.+|+++++++      +||||+++++++.  
T Consensus         1 ~~lg~g~~g----~v~~~~~~~------~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~--   62 (251)
T cd05041           1 EKIGKGNFG----DVYKGVLKG------NTEVAVKTCRSTLPPDLKRKFLQEAEILKQY------DHPNIVKLIGVCV--   62 (251)
T ss_pred             CccccCCCc----eEEEEEEeC------CCcEEEEeccccCCHHHHHHHHHHHHHHHhC------CCCCeEEEEEEEe--
Confidence            479999999    999999873      7899999987532   334678899999999      4999999999998  


Q ss_pred             ccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 005958          169 TTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLH  248 (667)
Q Consensus       169 ~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLH  248 (667)
                         .....++||| |+++++|.+++....        ..+++                    ..+..++.|++.||.|||
T Consensus        63 ---~~~~~~~v~e-~~~~~~l~~~l~~~~--------~~~~~--------------------~~~~~~~~~~~~~l~~lH  110 (251)
T cd05041          63 ---QKQPIYIVME-LVPGGSLLTFLRKKK--------NRLTV--------------------KKLLQMSLDAAAGMEYLE  110 (251)
T ss_pred             ---cCCCeEEEEE-cCCCCcHHHHHHhcC--------CCCCH--------------------HHHHHHHHHHHHHHHHHH
Confidence               7788999999 999989999997632        12332                    457789999999999999


Q ss_pred             HCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhhHHHHHHHHHHH
Q 005958          249 SHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKM  317 (667)
Q Consensus       249 s~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksDIWSLGviLyem  317 (667)
                      ++||+||||||+||+++. ++.+||+|||++......           ...|+|||.+. ...++.++|||||||++|||
T Consensus       111 ~~~i~h~di~p~nili~~-~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~-~~~~~~~~Di~slG~i~~~l  188 (251)
T cd05041         111 SKNCIHRDLAARNCLVGE-NNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAPEALN-YGRYTSESDVWSYGILLWET  188 (251)
T ss_pred             hCCEehhhcCcceEEEcC-CCcEEEeeccccccccCCcceeccccCcceeccCChHhhc-cCCCCcchhHHHHHHHHHHH
Confidence            999999999999999998 899999999999754421           13499999654 45689999999999999999


Q ss_pred             Hh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHc
Q 005958          318 VL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALR  396 (667)
Q Consensus       318 lt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~  396 (667)
                      ++ |..||...            ........+....         ........+.++.+|+.+||+.+|++|||+.|+++
T Consensus       189 ~t~~~~p~~~~------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~ell~  247 (251)
T cd05041         189 FSLGDTPYPGM------------SNQQTRERIESGY---------RMPAPQLCPEEIYRLMLQCWAYDPENRPSFSEIYN  247 (251)
T ss_pred             HhccCCCCccC------------CHHHHHHHHhcCC---------CCCCCccCCHHHHHHHHHHhccChhhCcCHHHHHH
Confidence            98 88888522            1122222221110         11223456789999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.7e-35  Score=340.43  Aligned_cols=253  Identities=19%  Similarity=0.275  Sum_probs=190.0

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ..+|+.++.||+|+||    .||+|+++-     +|+.||||+|....   ....+.+|+.+|.+|      +|||||++
T Consensus       478 ~~DFEEL~lLGkGGFG----~VvkVRNKl-----DGr~YAIKKIpl~~s~~~~skI~rEVk~LArL------nHpNVVRY  542 (1351)
T KOG1035|consen  478 LNDFEELELLGKGGFG----SVVKVRNKL-----DGREYAIKKIPLKASDKLYSKILREVKLLARL------NHPNVVRY  542 (1351)
T ss_pred             hhhhHHHHHhcCCCCc----eEEEEeecc-----cchhhhhhhccCchHHHHHHHHHHHHHHHhhc------CCcceeee
Confidence            4788999999999999    999999998     89999999998642   334568999999999      59999999


Q ss_pred             EEEEEecccC----------------------------------------------------------------------
Q 005958          162 HGYVSSHTTS----------------------------------------------------------------------  171 (667)
Q Consensus       162 ~~~~~~~~~~----------------------------------------------------------------------  171 (667)
                      |..|......                                                                      
T Consensus       543 ysAWVEs~~~~~~~ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d  622 (1351)
T KOG1035|consen  543 YSAWVESTAELTVLEIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDD  622 (1351)
T ss_pred             ehhhhccCCccccccccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCccccc
Confidence            9866421000                                                                      


Q ss_pred             ------------------------------------CC--------CeEEEEEccCCCCCCHHHHHHhcCCCcccccccC
Q 005958          172 ------------------------------------GR--------SLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLA  207 (667)
Q Consensus       172 ------------------------------------~~--------~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~  207 (667)
                                                          .+        ..+||-|| ||+.-.|.++|.++..         
T Consensus       623 ~dedg~~~S~tS~~e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQME-yCE~~ll~~iI~~N~~---------  692 (1351)
T KOG1035|consen  623 SDEDGRNLSNTSDSEGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQME-YCEKTLLRDIIRRNHF---------  692 (1351)
T ss_pred             ccccccccccccccCCccccCcchhhhhhccccCCccccccccccceEEEEEHh-hhhhhHHHHHHHhccc---------
Confidence                                                00        36899999 9999555566665431         


Q ss_pred             CCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeeccccccc---C
Q 005958          208 LDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFY---E  284 (667)
Q Consensus       208 l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~---~  284 (667)
                      ..                   .....+.+++||++||.|+|++|||||||||.||++++ ++.|||+|||+|....   .
T Consensus       693 ~~-------------------~~d~~wrLFreIlEGLaYIH~~giIHRDLKP~NIFLd~-~~~VKIGDFGLAt~~~~~~~  752 (1351)
T KOG1035|consen  693 NS-------------------QRDEAWRLFREILEGLAYIHDQGIIHRDLKPRNIFLDS-RNSVKIGDFGLATDLKENLE  752 (1351)
T ss_pred             ch-------------------hhHHHHHHHHHHHHHHHHHHhCceeeccCCcceeEEcC-CCCeeecccccchhhhhhhh
Confidence            10                   02467999999999999999999999999999999998 9999999999998621   0


Q ss_pred             ------------------------CCCCCCCcccccCCC--CCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccC
Q 005958          285 ------------------------DGPNNSSPDSNMDRR--QMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKG  338 (667)
Q Consensus       285 ------------------------~~~~Y~APE~l~~~~--~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g  338 (667)
                                              ++..|+|||++-+..  .|+.|+||||||||++||+.   ||.             
T Consensus       753 ~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~y---PF~-------------  816 (1351)
T KOG1035|consen  753 SIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTSSNKYNSKIDMYSLGIVLFEMLY---PFG-------------  816 (1351)
T ss_pred             hHhhccCccccccCCCCcccccccceeeeecHHHhcccccccccchhhhHHHHHHHHHHhc---cCC-------------
Confidence                                    014699999666555  69999999999999999995   353             


Q ss_pred             CChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCC
Q 005958          339 IDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCG  402 (667)
Q Consensus       339 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~  402 (667)
                      +..+.. ..+...-....+..   -.++.+--+.-..+|..||+.||++||||.|+|++.||-.
T Consensus       817 TsMERa-~iL~~LR~g~iP~~---~~f~~~~~~~e~slI~~Ll~hdP~kRPtA~eLL~s~llpp  876 (1351)
T KOG1035|consen  817 TSMERA-SILTNLRKGSIPEP---ADFFDPEHPEEASLIRWLLSHDPSKRPTATELLNSELLPP  876 (1351)
T ss_pred             chHHHH-HHHHhcccCCCCCC---cccccccchHHHHHHHHHhcCCCccCCCHHHHhhccCCCc
Confidence            121111 11111111111111   1123334467789999999999999999999999999974

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=100.00  E-value=4.5e-34  Score=292.43  Aligned_cols=237  Identities=17%  Similarity=0.134  Sum_probs=185.4

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEec
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSH  168 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~  168 (667)
                      +.||+|+||    .||+|.+....  .....||||.+....   ..+.+.+|+.++++++      ||||+++++++.  
T Consensus         1 ~~ig~g~~~----~v~~~~~~~~~--~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~------h~~iv~~~~~~~--   66 (257)
T cd05040           1 KKLGDGSFG----VVRRGEWSTSG--GKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLD------HENLIRLYGVVL--   66 (257)
T ss_pred             CcCCccCcc----cEEeeeEecCC--CCceEEEEeecCCcccHHHHHHHHHHHHHHhhcC------CCCccceeEEEc--
Confidence            468999999    99999986521  133479999998643   3456789999999995      999999999998  


Q ss_pred             ccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 005958          169 TTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLH  248 (667)
Q Consensus       169 ~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLH  248 (667)
                         . ...++||| |+++|+|.+++.....       ..++                    ...++.++.|++.||.|||
T Consensus        67 ---~-~~~~~v~e-~~~~~~L~~~l~~~~~-------~~~~--------------------~~~~~~~~~qi~~~L~~lH  114 (257)
T cd05040          67 ---T-HPLMMVTE-LAPLGSLLDRLRKDAL-------GHFL--------------------ISTLCDYAVQIANGMRYLE  114 (257)
T ss_pred             ---C-CeEEEEEE-ecCCCcHHHHHHhccc-------ccCc--------------------HHHHHHHHHHHHHHHHHHH
Confidence               5 88999999 9999999999987431       1233                    3567889999999999999


Q ss_pred             HCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC------------CCCCCCcccccCCCCCCchhhHHHHHHHHHH
Q 005958          249 SHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED------------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAK  316 (667)
Q Consensus       249 s~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------------~~~Y~APE~l~~~~~ys~ksDIWSLGviLye  316 (667)
                      ++||+|+||||+||+++. ++.+||+|||++..+...            ...|+|||.+ ....++.++|||||||++||
T Consensus       115 ~~~i~H~di~p~nil~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~-~~~~~~~~~Di~slG~~l~e  192 (257)
T cd05040         115 SKRFIHRDLAARNILLAS-DDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPESL-RTRTFSHASDVWMFGVTLWE  192 (257)
T ss_pred             hCCccccccCcccEEEec-CCEEEeccccccccccccccceecccCCCCCceecCHHHh-cccCcCchhhhHHHHHHHHH
Confidence            999999999999999998 899999999999766442            2469999954 44568999999999999999


Q ss_pred             HHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHH
Q 005958          317 MVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDAL  395 (667)
Q Consensus       317 mlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL  395 (667)
                      |++ |.+||...            ...+....+..   ..     .........+.++.+++.+||+.+|++|||+.+++
T Consensus       193 l~t~g~~p~~~~------------~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~  252 (257)
T cd05040         193 MFTYGEEPWAGL------------SGSQILKKIDK---EG-----ERLERPEACPQDIYNVMLQCWAHNPADRPTFAALR  252 (257)
T ss_pred             HHhCCCCCCCCC------------CHHHHHHHHHh---cC-----CcCCCCccCCHHHHHHHHHHCCCCcccCCCHHHHH
Confidence            998 99998421            12222222111   00     01122234678999999999999999999999987


Q ss_pred             c
Q 005958          396 R  396 (667)
Q Consensus       396 ~  396 (667)
                      +
T Consensus       253 ~  253 (257)
T cd05040         253 E  253 (257)
T ss_pred             H
Confidence            5

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-36  Score=300.56  Aligned_cols=265  Identities=14%  Similarity=0.100  Sum_probs=208.8

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCC
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      +...|..++.+-+..||.|+||    +|++..++.     +|+..|||.|+..   ...+++..|.+...+-.     +.
T Consensus        57 ~~~~F~~~~Lqdlg~iG~G~fG----~V~KM~hk~-----sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~-----~c  122 (361)
T KOG1006|consen   57 HLHTFTSDNLQDLGEIGNGAFG----TVNKMLHKP-----SGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSS-----NC  122 (361)
T ss_pred             cccccccchHHHHHHhcCCcch----hhhhhhcCc-----cCcEEEEEEeeeccchHHHHHHHHHHHHHHhhc-----CC
Confidence            5667888889999999999999    999999998     8999999999863   34566788999888877     79


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      ||||++||+..     .++..||.|| +|+- +|..+.+.--.    -+...++|                    ..+-.
T Consensus       123 p~IVkfyGa~F-----~EGdcWiCME-LMd~-SlDklYk~vy~----vq~~~ipE--------------------~Ilg~  171 (361)
T KOG1006|consen  123 PNIVKFYGALF-----SEGDCWICME-LMDI-SLDKLYKRVYS----VQKSRIPE--------------------NILGH  171 (361)
T ss_pred             cHHHHHhhhhh-----cCCceeeeHH-HHhh-hHHHHHHHHHH----HHhccCcH--------------------hhhhh
Confidence            99999999998     8899999999 9998 88776653110    00123444                    56777


Q ss_pred             HHHHHHHHHHHHHH-CCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCC-CCCchh
Q 005958          236 LMRDLLIGVNYLHS-HGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRR-QMMIAF  305 (667)
Q Consensus       236 i~~QIl~aL~yLHs-~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~-~ys~ks  305 (667)
                      |....+.||+||-. ..|||||+||+|||++. .|.+||||||.+-.+...        -..|||||.+.... .|+.++
T Consensus       172 ItvatV~AL~yLK~~lkiIHRDvKPSNILldr-~G~vKLCDFGIcGqLv~SiAkT~daGCrpYmAPERi~p~~~gyDiRS  250 (361)
T KOG1006|consen  172 ITVATVDALDYLKEELKIIHRDVKPSNILLDR-HGDVKLCDFGICGQLVDSIAKTVDAGCRPYMAPERIDPSDKGYDIRS  250 (361)
T ss_pred             eeeeehhHHHHHHHHhhhhhccCChhheEEec-CCCEeeecccchHhHHHHHHhhhccCCccccChhccCCccCCcchhh
Confidence            88889999999976 58999999999999999 999999999998765432        37899999766433 599999


Q ss_pred             hHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCc
Q 005958          306 DMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       306 DIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      |+||||++|||+.||..|+......+              +.+..+..+.++...... .--+.+..++.||.-||.+|-
T Consensus       251 DvWSLGITL~EvAtG~fPyr~w~svf--------------eql~~Vv~gdpp~l~~~~-~~~~~s~~~~~fintCl~Kd~  315 (361)
T KOG1006|consen  251 DVWSLGITLYEVATGNFPYRKWDSVF--------------EQLCQVVIGDPPILLFDK-ECVHYSFSMVRFINTCLIKDR  315 (361)
T ss_pred             hhhhhcceEeeeecCCCCcchHHHHH--------------HHHHHHHcCCCCeecCcc-cccccCHHHHHHHHHHhhccc
Confidence            99999999999999999986443322              222333333333111100 012468899999999999999


Q ss_pred             CCCCCHHHHHcCCCCCCCC
Q 005958          386 SKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       386 ~kRpSa~elL~HPwf~~~~  404 (667)
                      +.||...+++++||+....
T Consensus       316 ~~Rpky~~Lk~~~fyr~y~  334 (361)
T KOG1006|consen  316 SDRPKYDDLKKFPFYRMYA  334 (361)
T ss_pred             ccCcchhhhhcCchhhhhh
Confidence            9999999999999998654

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=100.00  E-value=2.8e-34  Score=302.84  Aligned_cols=246  Identities=13%  Similarity=0.107  Sum_probs=189.9

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh---HHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA---QRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~---~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      +..++|+..+.||+|+||    .||+|.+...+.. ....||+|.+.....   ...+.+|+.+++.+      .||||+
T Consensus         4 ~~~~~~~~~~~lg~G~~g----~vy~~~~~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l------~h~niv   72 (303)
T cd05110           4 LKETELKRVKVLGSGAFG----TVYKGIWVPEGET-VKIPVAIKILNETTGPKANVEFMDEALIMASM------DHPHLV   72 (303)
T ss_pred             cchhhceeccccccCCCc----cEEEEEEecCCCc-ceeeEEEEeccccCCHHHHHHHHHHHHHHHhC------CCCCcc
Confidence            456789999999999999    9999998762110 123689998875322   23567899999999      499999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++.     . ...++++| |+++|+|.+++..+.        ..+++                    ..+..++.|
T Consensus        73 ~~~~~~~-----~-~~~~~v~e-~~~~g~l~~~~~~~~--------~~~~~--------------------~~~~~~~~q  117 (303)
T cd05110          73 RLLGVCL-----S-PTIQLVTQ-LMPHGCLLDYVHEHK--------DNIGS--------------------QLLLNWCVQ  117 (303)
T ss_pred             cEEEEEc-----C-CCceeeeh-hcCCCCHHHHHHhcc--------cCCCH--------------------HHHHHHHHH
Confidence            9999986     3 34679999 999999999997643        12343                    456779999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhhHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      ++.||.|||++||+||||||+||+++. ++.+||+|||++......           ...|+|||.+ ....++.++|||
T Consensus       118 i~~~L~~LH~~~ivH~dikp~Nill~~-~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~-~~~~~~~~~Diw  195 (303)
T cd05110         118 IAKGMMYLEERRLVHRDLAARNVLVKS-PNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECI-HYRKFTHQSDVW  195 (303)
T ss_pred             HHHHHHHHhhcCeeccccccceeeecC-CCceEEccccccccccCcccccccCCCccccccCCHHHh-ccCCCChHHHHH
Confidence            999999999999999999999999988 889999999999765322           1469999965 455689999999


Q ss_pred             HHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          309 CVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       309 SLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      ||||++|||++ |..||.+            .......+.+...         ...+..+..+.++.+++.+||..||++
T Consensus       196 slG~~l~el~t~g~~p~~~------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~li~~c~~~~p~~  254 (303)
T cd05110         196 SYGVTIWELMTFGGKPYDG------------IPTREIPDLLEKG---------ERLPQPPICTIDVYMVMVKCWMIDADS  254 (303)
T ss_pred             HHHHHHHHHHhCCCCCCCC------------CCHHHHHHHHHCC---------CCCCCCCCCCHHHHHHHHHHcCCChhh
Confidence            99999999997 8888742            2222233332211         011223456789999999999999999


Q ss_pred             CCCHHHHHcC
Q 005958          388 RISCLDALRH  397 (667)
Q Consensus       388 RpSa~elL~H  397 (667)
                      ||+++++++.
T Consensus       255 Rp~~~~l~~~  264 (303)
T cd05110         255 RPKFKELAAE  264 (303)
T ss_pred             CcCHHHHHHH
Confidence            9999998874

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-34  Score=334.61  Aligned_cols=254  Identities=17%  Similarity=0.174  Sum_probs=207.0

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcc---hhhHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS---VQAQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~---~~~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      .+.....++.+.||+|+||    .||.|.............||||.+.+   .+...++.+|..+|+++      +||||
T Consensus       688 ~v~~~~v~l~~~lG~G~FG----~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f------~HpNi  757 (1025)
T KOG1095|consen  688 EVPRKNVTLLRVLGKGAFG----EVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKF------DHPNI  757 (1025)
T ss_pred             cCChhheEeeeeecccccc----ceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcC------CCcce
Confidence            3556788999999999999    99999988753322245699999986   34556779999999999      59999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      |+++|++.     +.+..+|++| ||.+|||..+|++.+.-+.                      ....+.+.++..++.
T Consensus       758 v~liGv~l-----~~~~~~i~le-yM~gGDL~sflr~~r~~~~----------------------~~~~L~~~dLl~~a~  809 (1025)
T KOG1095|consen  758 VSLIGVCL-----DSGPPLILLE-YMEGGDLLSFLRESRPAPF----------------------QPSNLSMRDLLAFAL  809 (1025)
T ss_pred             eeEEEeec-----CCCCcEEEeh-hcccCcHHHHHHhcccccC----------------------CCCCCCHHHHHHHHH
Confidence            99999999     7889999999 9999999999998642111                      123345678899999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-----------CCCCCcccccCCCCCCchhhH
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-----------PNNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-----------~~Y~APE~l~~~~~ys~ksDI  307 (667)
                      ||++|++||++++.|||||...|+|++. ...+||+|||+|+.+....           ..|||||.+.. ..++.|+||
T Consensus       810 dvA~G~~YLe~~~fvHRDLAaRNCLL~~-~r~VKIaDFGlArDiy~~~yyr~~~~a~lPvkWm~PEsl~d-~iFtskSDv  887 (1025)
T KOG1095|consen  810 DVAKGMNYLESKHFVHRDLAARNCLLDE-RRVVKIADFGLARDIYDKDYYRKHGEAMLPVKWMPPESLKD-GIFTSKSDV  887 (1025)
T ss_pred             HHhhhhHHHHhCCCcCcchhhhheeecc-cCcEEEcccchhHhhhhchheeccCccccceecCCHHHHhh-cccccccch
Confidence            9999999999999999999999999999 7999999999999654433           46999997665 569999999


Q ss_pred             HHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          308 RCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       308 WSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      |||||++||+++ |..||++..            ..++....   +..      ..++.+..+.+.+.++|.+||+.+|+
T Consensus       888 WsFGVllWEifslG~~PY~~~~------------n~~v~~~~---~~g------gRL~~P~~CP~~ly~lM~~CW~~~pe  946 (1025)
T KOG1095|consen  888 WSFGVLLWEIFSLGATPYPSRS------------NFEVLLDV---LEG------GRLDPPSYCPEKLYQLMLQCWKHDPE  946 (1025)
T ss_pred             hhhHHHHHHHHhCCCCCCCCcc------------hHHHHHHH---HhC------CccCCCCCCChHHHHHHHHHccCChh
Confidence            999999999999 889987332            22222211   111      13556678899999999999999999


Q ss_pred             CCCCHHHHHc
Q 005958          387 KRISCLDALR  396 (667)
Q Consensus       387 kRpSa~elL~  396 (667)
                      +||+...+++
T Consensus       947 ~RP~F~~i~~  956 (1025)
T KOG1095|consen  947 DRPSFRTIVE  956 (1025)
T ss_pred             hCccHHHHHh
Confidence            9999999987

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=100.00  E-value=5.7e-34  Score=294.27  Aligned_cols=251  Identities=16%  Similarity=0.162  Sum_probs=187.9

Q ss_pred             eEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           88 FKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        88 y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      |.+.+.||+|+||    .||+|.+....  .+++.||||++...    ...+.+.+|+++++.+.      ||||+++++
T Consensus         1 ~~~~~~ig~g~~g----~v~~~~~~~~~--~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~------h~~i~~~~~   68 (273)
T cd05074           1 FTLGRMLGKGEFG----SVREAQLKSED--GSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFD------HPNVIKLIG   68 (273)
T ss_pred             CcchhcccCCCCC----CEEeeEeeccC--CCceEEEEEEeccccCChHHHHHHHHHHHHHhcCC------CCCcceEEE
Confidence            6788999999999    99999976421  25789999998752    23345688999999994      999999999


Q ss_pred             EEEecccC-CCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          164 YVSSHTTS-GRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       164 ~~~~~~~~-~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      ++...... .....++++| |+.+|+|.+++.......                       ....++...++.++.||+.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~-----------------------~~~~l~~~~~~~~~~~i~~  124 (273)
T cd05074          69 VSLRSRAKGRLPIPMVILP-FMKHGDLHTFLLMSRIGE-----------------------EPFTLPLQTLVRFMIDIAS  124 (273)
T ss_pred             EEccCCCCCcccceEEEEe-cCCCCcHHHHHHHhcccC-----------------------CCCCCCHHHHHHHHHHHHH
Confidence            88633111 1123578999 999999999886432000                       0012334567889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhhHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      ||+|||++||+||||||+||+++. ++.+||+|||+++.....           .+.|++||.+ ....++.++||||||
T Consensus       125 ~l~~lH~~~i~H~dikp~nili~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~-~~~~~~~~sDi~slG  202 (273)
T cd05074         125 GMEYLSSKNFIHRDLAARNCMLNE-NMTVCVADFGLSKKIYSGDYYRQGCASKLPVKWLALESL-ADNVYTTHSDVWAFG  202 (273)
T ss_pred             HHHHHHhCCEeecccchhhEEEcC-CCCEEECcccccccccCCcceecCCCccCchhhcCHhHH-hcCccchhhhhHHHH
Confidence            999999999999999999999998 899999999999865322           1468999954 455688999999999


Q ss_pred             HHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          312 FMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       312 viLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      |++|||++ |++||..            .+...+...+..   ..      ........+.++.+++.+||..+|++|||
T Consensus       203 ~il~el~~~g~~p~~~------------~~~~~~~~~~~~---~~------~~~~~~~~~~~~~~l~~~~l~~~p~~Rps  261 (273)
T cd05074         203 VTMWEIMTRGQTPYAG------------VENSEIYNYLIK---GN------RLKQPPDCLEDVYELMCQCWSPEPKCRPS  261 (273)
T ss_pred             HHHHHHhhCCCCCCCC------------CCHHHHHHHHHc---CC------cCCCCCCCCHHHHHHHHHHcCCChhhCcC
Confidence            99999999 8888852            222222222211   10      11122356789999999999999999999


Q ss_pred             HHHHHcC
Q 005958          391 CLDALRH  397 (667)
Q Consensus       391 a~elL~H  397 (667)
                      +.+++++
T Consensus       262 ~~~~~~~  268 (273)
T cd05074         262 FQHLRDQ  268 (273)
T ss_pred             HHHHHHH
Confidence            9999863

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=100.00  E-value=2.9e-34  Score=295.77  Aligned_cols=244  Identities=16%  Similarity=0.181  Sum_probs=185.2

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCC-CCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEe
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNS-PLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSS  167 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~-~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~  167 (667)
                      +.||+|+||    .||+|++..... ...++.||+|.+...   .....+.+|+++++.+.      ||||+++++++. 
T Consensus         1 ~~lg~g~~g----~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~~~~~~~-   69 (269)
T cd05044           1 NFLGSGAFG----EVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFN------HPNIVKLLGVCL-   69 (269)
T ss_pred             Cccccccce----eEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcC------CCCeeeEeeeec-
Confidence            368999999    999999875221 113478999988653   23456688999999994      999999999998 


Q ss_pred             cccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHH
Q 005958          168 HTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYL  247 (667)
Q Consensus       168 ~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yL  247 (667)
                          ..+..++||| |+++|+|.+++.......       .               ....+++..+..++.||+.||.||
T Consensus        70 ----~~~~~~~v~e-~~~~~~L~~~l~~~~~~~-------~---------------~~~~~~~~~~~~~~~~l~~~l~~l  122 (269)
T cd05044          70 ----LNEPQYIIME-LMEGGDLLSYLRDARVER-------F---------------GPPLLTLKELLDICLDVAKGCVYL  122 (269)
T ss_pred             ----CCCCeEEEEe-ccCCCcHHHHHHHhhhcc-------c---------------CCccccHHHHHHHHHHHHHHHHHH
Confidence                6778999999 999999999997642100       0               011123456788999999999999


Q ss_pred             HHCCCcccCCCCCcEEEcCCCC-----eEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhhHHHHH
Q 005958          248 HSHGLAHTELRLENVHISPVDR-----HIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       248 Hs~gIvHrDLKPeNILl~~~~~-----~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      |+.+++|+||||+||+++. ++     .++|+|||++......           ...|+|||.+. ...++.++||||||
T Consensus       123 H~~~i~H~dl~p~nil~~~-~~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Dv~slG  200 (269)
T cd05044         123 EQMHFIHRDLAARNCLVSE-KGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMAPESLL-DGKFTTQSDVWSFG  200 (269)
T ss_pred             HhCCcccCCCChheEEEec-CCCCCCcceEECCcccccccccccccccCcccCCCccccCHHHHc-cCCcccchhHHHHH
Confidence            9999999999999999997 55     8999999998754321           25699999554 45689999999999


Q ss_pred             HHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          312 FMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       312 viLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      |++|||++ |..||+..            ........+.   ..      .........++++++||.+||..+|++||+
T Consensus       201 ~il~ellt~g~~p~~~~------------~~~~~~~~~~---~~------~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~  259 (269)
T cd05044         201 VLMWEILTLGQQPYPAL------------NNQEVLQHVT---AG------GRLQKPENCPDKIYQLMTNCWAQDPSERPT  259 (269)
T ss_pred             HHHHHHHHcCCCCCccc------------CHHHHHHHHh---cC------CccCCcccchHHHHHHHHHHcCCCcccCCC
Confidence            99999998 99998522            1111111111   00      112233456789999999999999999999


Q ss_pred             HHHHHc
Q 005958          391 CLDALR  396 (667)
Q Consensus       391 a~elL~  396 (667)
                      ++++++
T Consensus       260 ~~~i~~  265 (269)
T cd05044         260 FDRIQE  265 (269)
T ss_pred             HHHHHH
Confidence            999875

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-34  Score=316.77  Aligned_cols=251  Identities=15%  Similarity=0.139  Sum_probs=198.6

Q ss_pred             CcccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcc-----hhhHHHHHHHHHHHHHHhhccC
Q 005958           78 GHVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS-----VQAQRRGRRAIEVLKKLVRRRL  152 (667)
Q Consensus        78 ~~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~-----~~~~~~~~rEi~iL~~L~~~~~  152 (667)
                      .+.+.+.-++..+.++||+|+||    .||+|..+..+.. ....||+|..+.     .....++.+|.++|+.+     
T Consensus       149 r~~Wel~H~~v~l~kkLGeGaFG----eV~~G~l~~~~~~-~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l-----  218 (474)
T KOG0194|consen  149 RQKWELSHSDIELGKKLGEGAFG----EVFKGKLKLKNGF-KVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQL-----  218 (474)
T ss_pred             ccccEEeccCccccceeeccccc----EEEEEEEEecCCc-eeeeeEEEeecccccccHHHHHHHHHHHHHHHhC-----
Confidence            35567777888889999999999    9999999873210 112289999874     23345679999999999     


Q ss_pred             CCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHH
Q 005958          153 MYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRL  232 (667)
Q Consensus       153 ~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~  232 (667)
                       +|||||++||+..     ...-++|||| +|.||+|.++|++.+.        .++                    ..+
T Consensus       219 -~H~NVVr~yGVa~-----~~~Pl~ivmE-l~~gGsL~~~L~k~~~--------~v~--------------------~~e  263 (474)
T KOG0194|consen  219 -NHPNVVRFYGVAV-----LEEPLMLVME-LCNGGSLDDYLKKNKK--------SLP--------------------TLE  263 (474)
T ss_pred             -CCCCEEEEEEEEc-----CCCccEEEEE-ecCCCcHHHHHHhCCC--------CCC--------------------HHH
Confidence             5999999999998     8889999999 9999999999998651        122                    244


Q ss_pred             HHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCc
Q 005958          233 IRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMI  303 (667)
Q Consensus       233 i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~  303 (667)
                      ...++.+.+.||+|||++++|||||-.+|+|++. ++.+||+|||+++.-..-         ...|+|||.+. ...|++
T Consensus       264 k~~~~~~AA~Gl~YLh~k~~IHRDIAARNcL~~~-~~~vKISDFGLs~~~~~~~~~~~~~klPirWLAPEtl~-~~~~s~  341 (474)
T KOG0194|consen  264 KLRFCYDAARGLEYLHSKNCIHRDIAARNCLYSK-KGVVKISDFGLSRAGSQYVMKKFLKKLPIRWLAPETLN-TGIFSF  341 (474)
T ss_pred             HHHHHHHHHhHHHHHHHCCCcchhHhHHHheecC-CCeEEeCccccccCCcceeeccccccCcceecChhhhc-cCcccc
Confidence            5679999999999999999999999999999998 788999999999765311         15799999554 448999


Q ss_pred             hhhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHH-HHHhccCCCCCCCCcccccCCCHHHHHHHHHhh
Q 005958          304 AFDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFL-LQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLL  381 (667)
Q Consensus       304 ksDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L  381 (667)
                      ++|||||||++||+++ |..||+            |....+....+ .....         .+.......++..++.+|+
T Consensus       342 kTDV~sfGV~~~Eif~~g~~Py~------------g~~~~~v~~kI~~~~~r---------~~~~~~~p~~~~~~~~~c~  400 (474)
T KOG0194|consen  342 KTDVWSFGVLLWEIFENGAEPYP------------GMKNYEVKAKIVKNGYR---------MPIPSKTPKELAKVMKQCW  400 (474)
T ss_pred             ccchhheeeeEEeeeccCCCCCC------------CCCHHHHHHHHHhcCcc---------CCCCCCCHHHHHHHHHHhc
Confidence            9999999999999999 788885            33333343433 21111         2223355678999999999


Q ss_pred             hcCcCCCCCHHHHHc
Q 005958          382 ATKPSKRISCLDALR  396 (667)
Q Consensus       382 ~~DP~kRpSa~elL~  396 (667)
                      ..||++||++.++.+
T Consensus       401 ~~~p~~R~tm~~i~~  415 (474)
T KOG0194|consen  401 KKDPEDRPTMSTIKK  415 (474)
T ss_pred             cCChhhccCHHHHHH
Confidence            999999999998764

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=100.00  E-value=9.7e-34  Score=316.94  Aligned_cols=300  Identities=24%  Similarity=0.351  Sum_probs=199.5

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCC-----------CCCCCcEEEEEEEcchhh---------------
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSN-----------SPLHNTKVVLRQLISVQA---------------  133 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~-----------~~~tg~~vAvK~i~~~~~---------------  133 (667)
                      ..++..++|++.++||+|+||    +||+|.....+           ....++.||||.+.....               
T Consensus       139 ~~r~~~d~F~i~~~LG~GgFG----~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~  214 (507)
T PLN03224        139 NSRWSSDDFQLRDKLGGGNFG----ITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKG  214 (507)
T ss_pred             CCCccccCceEeeEeecCCCe----EEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhc
Confidence            456788999999999999999    99999763321           112467899999864211               


Q ss_pred             -HHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEecc---cCCCCeEEEEEccCCCCCCHHHHHHhcCC-CcccccccCC
Q 005958          134 -QRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHT---TSGRSLFTLVHGQYHGSFSLRHWLQQADW-LPTLEATLAL  208 (667)
Q Consensus       134 -~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~---~~~~~~~~lVmE~~~~~GsL~~~i~~~~~-~~~l~~~~~l  208 (667)
                       .+....|+.++.++++ ..+.|.+++++++++....   ....+..++||| |+++|+|.+++..... .+.     .+
T Consensus       215 ~~e~~~vE~~~l~~l~~-~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~E-y~~~gsL~~~L~~~~~~~~~-----~L  287 (507)
T PLN03224        215 SAETGMVEAYMCAKIKR-NPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWK-FESDATLGDALDGKLGPFPG-----CL  287 (507)
T ss_pred             ccchhHHHHHHHHHhhc-ccchhhhhhhhhhhcccccccccccCCceEEEEE-cCCCCcHHHHHhhccCCCcc-----hH
Confidence             1122457777777752 1223445678888775321   113467899999 9999999999975321 000     00


Q ss_pred             CHHHHhhcCCC-CCCCCCccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--
Q 005958          209 DEESVRKVGDD-SIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--  285 (667)
Q Consensus       209 ~E~~a~~~~~~-~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--  285 (667)
                      .+. . ..+.. ...-+...+++..++.++.|++.||.|||+++|+||||||+|||++. ++.+||+|||++......  
T Consensus       288 ~e~-l-~~g~~l~~~~~~~~~~~~~~~~i~~ql~~aL~~lH~~~ivHrDLKp~NILl~~-~~~~kL~DFGla~~~~~~~~  364 (507)
T PLN03224        288 EEF-M-MAGKKIPDNMPQDKRDINVIKGVMRQVLTGLRKLHRIGIVHRDIKPENLLVTV-DGQVKIIDFGAAVDMCTGIN  364 (507)
T ss_pred             HHH-H-hcCCchhhhcccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCchHhEEECC-CCcEEEEeCcCccccccCCc
Confidence            000 0 00000 00011123456788999999999999999999999999999999998 889999999999754321  


Q ss_pred             --------CCCCCCcccccCCCC-------------------CC--chhhHHHHHHHHHHHHhCCC-CChhhhhhhhhhh
Q 005958          286 --------GPNNSSPDSNMDRRQ-------------------MM--IAFDMRCVGFMMAKMVLREL-MDPLIFTKFKSFL  335 (667)
Q Consensus       286 --------~~~Y~APE~l~~~~~-------------------ys--~ksDIWSLGviLyemltG~~-PF~~~~~~~~~~~  335 (667)
                              .+.|+|||.+.....                   |+  .++||||+||++|+|++|.. ||.........+.
T Consensus       365 ~~~~~g~~tp~Y~aPE~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f~~~~~  444 (507)
T PLN03224        365 FNPLYGMLDPRYSPPEELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLFNTELR  444 (507)
T ss_pred             cCccccCCCcceeChhhhcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhhhhHHh
Confidence                    367999997653221                   22  35799999999999999875 6643221111111


Q ss_pred             ccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCc---CCCCCHHHHHcCCCCCC
Q 005958          336 TKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKP---SKRISCLDALRHPFLCG  402 (667)
Q Consensus       336 ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP---~kRpSa~elL~HPwf~~  402 (667)
                      ....+...+..+         ......++.++..+++++||+.+||..+|   .+|+|++|+|+||||..
T Consensus       445 ~~~~~~~~~r~~---------~~~~~~~~~~d~~s~~~~dLi~~LL~~~~~~~~~RlSa~eaL~Hp~f~~  505 (507)
T PLN03224        445 QYDNDLNRWRMY---------KGQKYDFSLLDRNKEAGWDLACKLITKRDQANRGRLSVGQALSHRFFLP  505 (507)
T ss_pred             hccchHHHHHhh---------cccCCCcccccccChHHHHHHHHHhccCCCCcccCCCHHHHhCCCCcCC
Confidence            111111111111         11122345677889999999999999876   68999999999999964

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=100.00  E-value=1.3e-33  Score=292.04  Aligned_cols=243  Identities=19%  Similarity=0.222  Sum_probs=178.1

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEec
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSH  168 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~  168 (667)
                      +.||+|+||    .||+|......   ....+++|.+...   ...+.+.+|+.+++.+      +||||+++++.+.  
T Consensus         1 ~~lg~G~~g----~v~~~~~~~~~---~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l------~h~~iv~~~~~~~--   65 (268)
T cd05086           1 QEIGNGWFG----KVLLSEIYTDT---GVARVVVKELKANASSKEQNEFLQQGDPYRIL------QHPNILQCLGQCV--   65 (268)
T ss_pred             CcCCCCcCc----eEEEEEEEcCC---CcceEEEEEecCCCChHHHHHHHHHHHHHhcc------CCcchhheEEEec--
Confidence            369999999    99999865421   3456777876642   2345678899999988      4999999999998  


Q ss_pred             ccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 005958          169 TTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLH  248 (667)
Q Consensus       169 ~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLH  248 (667)
                         .....|+||| |+++|+|.+++.+.....     ..+                    +...++.++.||+.||+|||
T Consensus        66 ---~~~~~~lv~e-~~~~~~L~~~l~~~~~~~-----~~~--------------------~~~~~~~~~~~i~~al~~lH  116 (268)
T cd05086          66 ---EAIPYLLVFE-YCELGDLKSYLSQEQWHR-----RNS--------------------QLLLLQRMACEIAAGVTHMH  116 (268)
T ss_pred             ---CCCccEEEEe-cCCCCcHHHHHHhhhccc-----ccc--------------------cHHHHHHHHHHHHHHHHHHH
Confidence               6788999999 999999999998643110     011                    23457889999999999999


Q ss_pred             HCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-----------CCCCCCCcccccC------CCCCCchhhHHHHH
Q 005958          249 SHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-----------DGPNNSSPDSNMD------RRQMMIAFDMRCVG  311 (667)
Q Consensus       249 s~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-----------~~~~Y~APE~l~~------~~~ys~ksDIWSLG  311 (667)
                      +++|+||||||+|||++. ++.+||+|||++.....           ....|+|||++..      ...++.++||||||
T Consensus       117 ~~~i~H~dikp~nil~~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG  195 (268)
T cd05086         117 KHNFLHSDLALRNCFLTS-DLTVKVGDYGIGPSRYKEDYIETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALG  195 (268)
T ss_pred             HCCeeccCCccceEEEcC-CccEEecccccccccCcchhhhcccCCcCcccccCchhcccccCccccCCCCCcchhHHHH
Confidence            999999999999999998 89999999999864211           1257999996542      12457899999999


Q ss_pred             HHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          312 FMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       312 viLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      |++|||++ |.+||....           +.+.+...+......     ..........++.+.+++..|| .||++||+
T Consensus       196 ~~l~el~~~~~~p~~~~~-----------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~c~-~~P~~Rp~  258 (268)
T cd05086         196 VTLWELFENAAQPYSHLS-----------DREVLNHVIKDQQVK-----LFKPQLELPYSERWYEVLQFCW-LSPEKRAT  258 (268)
T ss_pred             HHHHHHHhCCCCCCCCCC-----------HHHHHHHHHhhcccc-----cCCCccCCCCcHHHHHHHHHHh-hCcccCCC
Confidence            99999997 567774211           111112211111100     0011223346789999999999 68999999


Q ss_pred             HHHHHc
Q 005958          391 CLDALR  396 (667)
Q Consensus       391 a~elL~  396 (667)
                      ++++++
T Consensus       259 ~~~i~~  264 (268)
T cd05086         259 AEEVHR  264 (268)
T ss_pred             HHHHHH
Confidence            999875

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>PHA02882 putative serine/threonine kinase; Provisional

Probab=100.00  E-value=2.5e-33  Score=294.78  Aligned_cols=257  Identities=14%  Similarity=0.139  Sum_probs=178.0

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhH---H-H------HHHHHHHHHHHhhccC
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQ---R-R------GRRAIEVLKKLVRRRL  152 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~---~-~------~~rEi~iL~~L~~~~~  152 (667)
                      +..++|++.+.||+|+||    +||+|.+....  ..+..+|+|+.......   + .      ...++..+..+   ..
T Consensus         9 i~~~~y~i~~~LG~G~fG----~Vy~~~~~~~~--~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~---~~   79 (294)
T PHA02882          9 ITGKEWKIDKLIGCGGFG----CVYETQCASDH--CINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNI---HN   79 (294)
T ss_pred             cCCCceEEeeEEecCCCc----eEEEEEEcCCc--ccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHh---cc
Confidence            444789999999999999    99999987610  01567777764422111   0 0      01222222222   34


Q ss_pred             CCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHH
Q 005958          153 MYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRL  232 (667)
Q Consensus       153 ~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~  232 (667)
                      +.|+||++++++..... ......+++|| ++.. ++.+.+....         .+++                    ..
T Consensus        80 ~~h~~i~~~~~~~~~~~-~~~~~~~~~~~-~~~~-~~~~~~~~~~---------~~~~--------------------~~  127 (294)
T PHA02882         80 IDHLGIPKYYGCGSFKR-CRMYYRFILLE-KLVE-NTKEIFKRIK---------CKNK--------------------KL  127 (294)
T ss_pred             CCCCCCCcEEEeeeEec-CCceEEEEEEe-hhcc-CHHHHHHhhc---------cCCH--------------------HH
Confidence            57999999999765221 01235688999 7766 7877776532         1222                    45


Q ss_pred             HHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeeccccccc----------------CCCCCCCCccccc
Q 005958          233 IRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFY----------------EDGPNNSSPDSNM  296 (667)
Q Consensus       233 i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~----------------~~~~~Y~APE~l~  296 (667)
                      ++.++.|++.||+|||++||+||||||+|||++. ++.++|+|||+|+.+.                .+.+.|+|||+. 
T Consensus       128 ~~~i~~qi~~~l~~lH~~~iiHrDiKp~Nill~~-~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~-  205 (294)
T PHA02882        128 IKNIMKDMLTTLEYIHEHGISHGDIKPENIMVDG-NNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAH-  205 (294)
T ss_pred             HHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcC-CCcEEEEEcCCceeeccCCcccccccccccccCCCccccCHHHh-
Confidence            7889999999999999999999999999999998 8899999999997542                234789999954 


Q ss_pred             CCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHH
Q 005958          297 DRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNL  376 (667)
Q Consensus       297 ~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dL  376 (667)
                      ....|+.++|||||||++|||++|.+||...........      ....+++.......        ...+..++++.++
T Consensus       206 ~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~~~~------~~~~~~~~~~~~~~--------~~~~~~~~~~~~~  271 (294)
T PHA02882        206 NGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGNLIH------AAKCDFIKRLHEGK--------IKIKNANKFIYDF  271 (294)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccchHHHH------HhHHHHHHHhhhhh--------hccCCCCHHHHHH
Confidence            456689999999999999999999999963211000000      00011111111110        0123456899999


Q ss_pred             HHHhhhcCcCCCCCHHHHHc
Q 005958          377 LSLLLATKPSKRISCLDALR  396 (667)
Q Consensus       377 I~~~L~~DP~kRpSa~elL~  396 (667)
                      +..|+..+|++||+.+++++
T Consensus       272 ~~~~~~~~~~~rp~~~~l~~  291 (294)
T PHA02882        272 IECVTKLSYEEKPDYDALIK  291 (294)
T ss_pred             HHHHHhCCCCCCCCHHHHHH
Confidence            99999999999999999875

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=100.00  E-value=2.7e-33  Score=288.90  Aligned_cols=245  Identities=12%  Similarity=0.125  Sum_probs=187.5

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch------------hhHHHHHHHHHHHHHHhhccCCC
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV------------QAQRRGRRAIEVLKKLVRRRLMY  154 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~------------~~~~~~~rEi~iL~~L~~~~~~~  154 (667)
                      +|++.+.||+|+||    .||+|.+...    +++.+|+|.+...            .......+|+.++.+..     +
T Consensus         1 ~y~~~~~ig~G~~~----~v~~~~~~~~----~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~-----~   67 (269)
T cd08528           1 EYAVLEHLGSGAFG----CVYKVRKKNN----GQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQL-----R   67 (269)
T ss_pred             CchhhhhhcCCCCc----eEEEEEEcCC----CCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcC-----C
Confidence            48899999999999    9999998863    4789999988531            11233567888777643     6


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      ||||+++++++.     ..+..++||| |+++++|.+++.....     ....+++                    ..++
T Consensus        68 h~~i~~~~~~~~-----~~~~~~lv~e-~~~~~~l~~~l~~~~~-----~~~~~~~--------------------~~~~  116 (269)
T cd08528          68 HPNIVRYYKTFL-----ENDRLYIVMD-LIEGAPLGEHFNSLKE-----KKQRFTE--------------------ERIW  116 (269)
T ss_pred             CCCeeeEEeeEc-----cCCeEEEEEe-cCCCCcHHHHHHHHHh-----ccCCCCH--------------------HHHH
Confidence            999999999998     7789999999 9999999999864210     0113443                    5678


Q ss_pred             HHHHHHHHHHHHHHH-CCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchh
Q 005958          235 LLMRDLLIGVNYLHS-HGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAF  305 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs-~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ks  305 (667)
                      .++.|++.||.|||+ .||+|+||||+||+++. ++.+||+|||.+......        ...|+|||.+. ...++.++
T Consensus       117 ~~~~~l~~~l~~lh~~~~i~H~dl~~~nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~Pe~~~-~~~~~~~~  194 (269)
T cd08528         117 NIFVQMVLALRYLHKEKRIVHRDLTPNNIMLGE-DDKVTITDFGLAKQKQPESKLTSVVGTILYSCPEIVK-NEPYGEKA  194 (269)
T ss_pred             HHHHHHHHHHHHhccCCceeecCCCHHHEEECC-CCcEEEecccceeecccccccccccCcccCcChhhhc-CCCCchHH
Confidence            899999999999996 78999999999999998 899999999999765433        25799999665 45589999


Q ss_pred             hHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCc
Q 005958          306 DMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       306 DIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      ||||||+++|+|++|++||...            ........+.   .....     .......++++.+||.+||+.||
T Consensus       195 Dv~slG~ll~~l~~g~~p~~~~------------~~~~~~~~~~---~~~~~-----~~~~~~~~~~l~~li~~cl~~~p  254 (269)
T cd08528         195 DVWAFGCILYQMCTLQPPFYST------------NMLSLATKIV---EAVYE-----PLPEGMYSEDVTDVITSCLTPDA  254 (269)
T ss_pred             HHHHHHHHHHHHHhCCCccccc------------CHHHHHHHHh---hccCC-----cCCcccCCHHHHHHHHHHCCCCC
Confidence            9999999999999999998521            1111111111   11000     00112467899999999999999


Q ss_pred             CCCCCHHHHHcC
Q 005958          386 SKRISCLDALRH  397 (667)
Q Consensus       386 ~kRpSa~elL~H  397 (667)
                      ++||++.|+..+
T Consensus       255 ~~Rp~~~e~~~~  266 (269)
T cd08528         255 EARPDIIQVSAM  266 (269)
T ss_pred             ccCCCHHHHHHH
Confidence            999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=8.6e-34  Score=306.51  Aligned_cols=252  Identities=17%  Similarity=0.160  Sum_probs=191.8

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh--HHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA--QRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~--~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      .++|.-...||+|+||    .||+|....      +..||||++.....  .+++.+|++++.+++      |||+|+++
T Consensus        74 T~~Fs~~~~ig~Ggfg----~VYkG~l~~------~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~------H~Nlv~Ll  137 (361)
T KOG1187|consen   74 TNNFSESNLIGEGGFG----TVYKGVLSD------GTVVAVKRLSSNSGQGEREFLNEVEILSRLR------HPNLVKLL  137 (361)
T ss_pred             HhCCchhcceecCCCe----EEEEEEECC------CCEEEEEEecCCCCcchhHHHHHHHHHhcCC------CcCcccEE
Confidence            4789999999999999    999999985      68999999887443  466999999999995      99999999


Q ss_pred             EEEEecccCCCC-eEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRS-LFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       163 ~~~~~~~~~~~~-~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      |||.     +.+ ..+||+| |+.+|+|.+++......                           ++++..-..|+.+++
T Consensus       138 GyC~-----e~~~~~~LVYE-ym~nGsL~d~L~~~~~~---------------------------~L~W~~R~kIa~g~A  184 (361)
T KOG1187|consen  138 GYCL-----EGGEHRLLVYE-YMPNGSLEDHLHGKKGE---------------------------PLDWETRLKIALGAA  184 (361)
T ss_pred             EEEe-----cCCceEEEEEE-ccCCCCHHHHhCCCCCC---------------------------CCCHHHHHHHHHHHH
Confidence            9999     666 5999999 99999999999864310                           334556678999999


Q ss_pred             HHHHHHHHCC---CcccCCCCCcEEEcCCCCeEEEeeecccccccC----------CCCCCCCcccccCCCCCCchhhHH
Q 005958          242 IGVNYLHSHG---LAHTELRLENVHISPVDRHIKVGILGNAADFYE----------DGPNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       242 ~aL~yLHs~g---IvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~----------~~~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      +||+|||...   ||||||||+|||+|+ +.+.||+|||+|+....          +...|+|||.+.. +..+.++|||
T Consensus       185 ~gL~yLH~~~~~~iiHrDiKssNILLD~-~~~aKlsDFGLa~~~~~~~~~~~~~~~gt~gY~~PEy~~~-g~lt~KsDVy  262 (361)
T KOG1187|consen  185 RGLAYLHEGCPPPIIHRDIKSSNILLDE-DFNAKLSDFGLAKLGPEGDTSVSTTVMGTFGYLAPEYAST-GKLTEKSDVY  262 (361)
T ss_pred             HHHHHHccCCCCCEecCCCCHHHeeECC-CCCEEccCccCcccCCccccceeeecCCCCccCChhhhcc-CCcCcccccc
Confidence            9999999964   999999999999998 99999999999976653          4467999995544 6689999999


Q ss_pred             HHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccc-cCCC-----HHHHHHHHHhhh
Q 005958          309 CVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQIL-DRNW-----GAGWNLLSLLLA  382 (667)
Q Consensus       309 SLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~s-----~e~~dLI~~~L~  382 (667)
                      ||||+|.||++|+.+.....         ......+.++....+....-.......+. ....     ..+..+..+|++
T Consensus       263 SFGVvllElitgr~~~d~~~---------~~~~~~l~~w~~~~~~~~~~~eiiD~~l~~~~~~~~~~~~~~~~~a~~C~~  333 (361)
T KOG1187|consen  263 SFGVVLLELITGRKAVDQSR---------PRGELSLVEWAKPLLEEGKLREIVDPRLKEGEYPDEKEVKKLAELALRCLR  333 (361)
T ss_pred             cchHHHHHHHhCCcccCCCC---------CcccccHHHHHHHHHHCcchhheeCCCccCCCCChHHHHHHHHHHHHHHcC
Confidence            99999999999997653110         01111133333222222100000000111 1112     235678899999


Q ss_pred             cCcCCCCCHHHHHc
Q 005958          383 TKPSKRISCLDALR  396 (667)
Q Consensus       383 ~DP~kRpSa~elL~  396 (667)
                      .+|.+||++.|+++
T Consensus       334 ~~~~~RP~m~~Vv~  347 (361)
T KOG1187|consen  334 PDPKERPTMSQVVK  347 (361)
T ss_pred             cCCCcCcCHHHHHH
Confidence            99999999999754

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=100.00  E-value=5.9e-35  Score=325.87  Aligned_cols=245  Identities=18%  Similarity=0.205  Sum_probs=189.1

Q ss_pred             EEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEecc
Q 005958           90 ILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHT  169 (667)
Q Consensus        90 i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~  169 (667)
                      -.+.+|.|+.|+   .||+|...       ++.||||.+-.. ....+.|||..|+.-.     .|||||++|+.-.   
T Consensus       513 ~~eilG~Gs~Gt---~Vf~G~ye-------~R~VAVKrll~e-~~~~A~rEi~lL~eSD-----~H~NviRyyc~E~---  573 (903)
T KOG1027|consen  513 PKEILGYGSNGT---VVFRGVYE-------GREVAVKRLLEE-FFDFAQREIQLLQESD-----EHPNVIRYYCSEQ---  573 (903)
T ss_pred             cHHHcccCCCCc---EEEEEeeC-------CceehHHHHhhH-hHHHHHHHHHHHHhcc-----CCCceEEEEeecc---
Confidence            346789999996   89999986       589999998653 3345789999999998     7999999999887   


Q ss_pred             cCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHH
Q 005958          170 TSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHS  249 (667)
Q Consensus       170 ~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs  249 (667)
                        +.++.||+.| +|.. +|.+++....  ...+....                       -..+.++.|++.||++||+
T Consensus       574 --d~qF~YIalE-LC~~-sL~dlie~~~--~d~~~~~~-----------------------i~~~~~l~q~~~GlaHLHs  624 (903)
T KOG1027|consen  574 --DRQFLYIALE-LCAC-SLQDLIESSG--LDVEMQSD-----------------------IDPISVLSQIASGLAHLHS  624 (903)
T ss_pred             --CCceEEEEeh-Hhhh-hHHHHHhccc--cchhhccc-----------------------ccHHHHHHHHHHHHHHHHh
Confidence              8899999999 9999 9999998741  11111001                       1346799999999999999


Q ss_pred             CCCcccCCCCCcEEEcCC----CCeEEEeeecccccccCCC------------CCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          250 HGLAHTELRLENVHISPV----DRHIKVGILGNAADFYEDG------------PNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       250 ~gIvHrDLKPeNILl~~~----~~~vKL~DFGlA~~~~~~~------------~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      .+||||||||+||||+..    ...++|+|||+|+.+..+.            ..|+|||.+.... -+.++||||+||+
T Consensus       625 l~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~sS~~r~s~~sGt~GW~APE~L~~~~-~~~avDiFslGCv  703 (903)
T KOG1027|consen  625 LKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGKSSFSRLSGGSGTSGWQAPEQLREDR-KTQAVDIFSLGCV  703 (903)
T ss_pred             cccccccCCCceEEEEccCCCcceeEEecccccccccCCCcchhhcccCCCCcccccCHHHHhccc-cCcccchhhcCce
Confidence            999999999999999862    2579999999999876554            5699999665444 4679999999999


Q ss_pred             HHHHHhC-CCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHH
Q 005958          314 MAKMVLR-ELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCL  392 (667)
Q Consensus       314 LyemltG-~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~  392 (667)
                      +|+.++| ..||.+..             +...+++.    ....    -..+.+....+++|||.+||++||..||+|.
T Consensus       704 fyYvltgG~HpFGd~~-------------~R~~NIl~----~~~~----L~~L~~~~d~eA~dLI~~ml~~dP~~RPsa~  762 (903)
T KOG1027|consen  704 FYYVLTGGSHPFGDSL-------------ERQANILT----GNYT----LVHLEPLPDCEAKDLISRMLNPDPQLRPSAT  762 (903)
T ss_pred             EEEEecCCccCCCchH-------------Hhhhhhhc----Cccc----eeeeccCchHHHHHHHHHhcCCCcccCCCHH
Confidence            9999986 89985322             11112211    1100    0111111222899999999999999999999


Q ss_pred             HHHcCCCCCCCC
Q 005958          393 DALRHPFLCGPR  404 (667)
Q Consensus       393 elL~HPwf~~~~  404 (667)
                      ++|.||+|+.-.
T Consensus       763 ~VL~HPlFW~~e  774 (903)
T KOG1027|consen  763 DVLNHPLFWDSE  774 (903)
T ss_pred             HHhCCCccCChH
Confidence            999999998754

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-34  Score=316.15  Aligned_cols=198  Identities=21%  Similarity=0.259  Sum_probs=166.1

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcc---hhhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS---VQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~---~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ..|...+.||+|+||    .||+++++.     +|+.||||.++.   ....+...+|+++|++|      +|||||+++
T Consensus        13 y~W~~~e~LG~Ga~g----~V~rgrnke-----tG~~vAvK~~~~~~~~r~~e~~~~EieilkKL------nh~NIVk~f   77 (732)
T KOG4250|consen   13 YLWEMDERLGKGAFG----NVYRGRNKE-----TGRLVAVKTFNKESSLRPRERWCREIEILKKL------NHPNIVKLF   77 (732)
T ss_pred             cceeehhhhcCCccc----eeeeecccc-----cccchhHHhhhhhcccchHHHHHHHHHHHHHc------Cchhhhhhc
Confidence            456778999999999    999999998     899999999987   33445668999999999      499999999


Q ss_pred             EEEEecc-cCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          163 GYVSSHT-TSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       163 ~~~~~~~-~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++-++.. ........+||| ||.||||+.++++-.      ....|+                    ...+..++.++.
T Consensus        78 ~iee~~~~~~~~~~~vlvmE-yC~gGsL~~~L~~PE------N~~GLp--------------------E~e~l~lL~d~~  130 (732)
T KOG4250|consen   78 DIEETKFLGLVTRLPVLVME-YCSGGSLRKVLNSPE------NAYGLP--------------------ESEFLDLLSDLV  130 (732)
T ss_pred             ccCCccccCcccccceEEEe-ecCCCcHHHHhcCcc------cccCCC--------------------HHHHHHHHHHHH
Confidence            9876331 011556789999 999999999998633      122344                    466888999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCC-CC--eEEEeeecccccccCCC--------CCCCCcccccCCCCCCchhhHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPV-DR--HIKVGILGNAADFYEDG--------PNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~-~~--~vKL~DFGlA~~~~~~~--------~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      .||.|||++||+||||||.||++-.. +|  ..||+|||.|+.+.++.        +.|.+||++-..+.|+..+|.|||
T Consensus       131 ~al~~LrEn~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~d~s~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~  210 (732)
T KOG4250|consen  131 SALRHLRENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAARELDDNSLFTSLVGTEEYLHPELYERQKKYTATVDLWSF  210 (732)
T ss_pred             HHHHHHHHcCceeccCCCCcEEEeecCCCceEEeeecccccccCCCCCeeeeecCchhhcChHHHhhccCcCceeehhhh
Confidence            99999999999999999999998641 23  47999999999998876        679999955546889999999999


Q ss_pred             HHHHHHHHhCCCCCh
Q 005958          311 GFMMAKMVLRELMDP  325 (667)
Q Consensus       311 GviLyemltG~~PF~  325 (667)
                      ||++|+.+||..||-
T Consensus       211 GvtlY~caTG~lPF~  225 (732)
T KOG4250|consen  211 GVTLYECATGELPFI  225 (732)
T ss_pred             hhHHHHHhccCCCCC
Confidence            999999999999995

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=100.00  E-value=9.1e-33  Score=297.28  Aligned_cols=253  Identities=16%  Similarity=0.184  Sum_probs=201.1

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCC
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      ...++.-+...+.++||+|-||    .|.+|....      +..||+|+++...   ..+.+.+||++|.+|+      |
T Consensus       531 al~EfPRs~L~~~ekiGeGqFG----EVhLCeveg------~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLk------h  594 (807)
T KOG1094|consen  531 ALVEFPRSRLRFKEKIGEGQFG----EVHLCEVEG------PLKVAVKILRPDATKNARNDFLKEIKILSRLK------H  594 (807)
T ss_pred             chhhcchhheehhhhhcCcccc----eeEEEEecC------ceEEEEeecCcccchhHHHHHHHHHHHHhccC------C
Confidence            4456677888999999999999    999999874      6999999998733   3467899999999996      9


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      |||+++++++.     .++.+++||| |+++|+|.+++.++.. +.+      ..                    .....
T Consensus       595 PNIveLvGVC~-----~DePicmI~E-YmEnGDLnqFl~ahea-pt~------~t--------------------~~~vs  641 (807)
T KOG1094|consen  595 PNIVELLGVCV-----QDDPLCMITE-YMENGDLNQFLSAHEL-PTA------ET--------------------APGVS  641 (807)
T ss_pred             CCeeEEEeeee-----cCCchHHHHH-HHhcCcHHHHHHhccC-ccc------cc--------------------chhHH
Confidence            99999999999     7889999999 9999999999998741 111      10                    12344


Q ss_pred             HHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-----------CCCCCcccccCCCCCCch
Q 005958          236 LMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-----------PNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       236 i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-----------~~Y~APE~l~~~~~ys~k  304 (667)
                      |+.||+.|++||.+.++|||||.+.|+|++. ++++||+|||+++.+..+.           ..|||||.++.++ ++++
T Consensus       642 i~tqiasgmaYLes~nfVHrd~a~rNcLv~~-e~~iKiadfgmsR~lysg~yy~vqgr~vlpiRwmawEsillgk-Ftta  719 (807)
T KOG1094|consen  642 ICTQIASGMAYLESLNFVHRDLATRNCLVDG-EFTIKIADFGMSRNLYSGDYYRVQGRAVLPIRWMAWESILLGK-FTTA  719 (807)
T ss_pred             HHHHHHHHHHHHHhhchhhccccccceeecC-cccEEecCcccccccccCCceeeecceeeeeeehhHHHHHhcc-ccch
Confidence            9999999999999999999999999999999 9999999999999776654           4699999877654 8999


Q ss_pred             hhHHHHHHHHHHHHh--CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhh
Q 005958          305 FDMRCVGFMMAKMVL--RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLA  382 (667)
Q Consensus       305 sDIWSLGviLyemlt--G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~  382 (667)
                      +|+|+||+++|||++  .+.||.+..            .++..+.....+.....  ..-+..++-+..++.+||.+||.
T Consensus       720 SDvWafgvTlwE~~~~C~e~Py~~lt------------~e~vven~~~~~~~~~~--~~~l~~P~~cp~~lyelml~Cw~  785 (807)
T KOG1094|consen  720 SDVWAFGVTLWEVFMLCREQPYSQLT------------DEQVVENAGEFFRDQGR--QVVLSRPPACPQGLYELMLRCWR  785 (807)
T ss_pred             hhhhhhHHHHHHHHHHHhhCchhhhh------------HHHHHHhhhhhcCCCCc--ceeccCCCcCcHHHHHHHHHHhc
Confidence            999999999999876  667775321            11122222222221111  11223456678899999999999


Q ss_pred             cCcCCCCCHHHHHc
Q 005958          383 TKPSKRISCLDALR  396 (667)
Q Consensus       383 ~DP~kRpSa~elL~  396 (667)
                      .|-++||+.+++-.
T Consensus       786 ~es~~RPsFe~lh~  799 (807)
T KOG1094|consen  786 RESEQRPSFEQLHL  799 (807)
T ss_pred             hhhhcCCCHHHHHH
Confidence            99999999999854

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=100.00  E-value=5e-33  Score=300.51  Aligned_cols=249  Identities=16%  Similarity=0.149  Sum_probs=200.6

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCC
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      ...++..+...+.+.||.|-||    .||+|...... +...--||||..+.+   .+.+.+..|..+|+.+      +|
T Consensus       382 rnyel~Re~Itl~r~iG~GqFG----dVy~gvYt~~~-kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnf------dH  450 (974)
T KOG4257|consen  382 RNYELRRELITLKRLIGEGQFG----DVYKGVYTDPE-KGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNF------DH  450 (974)
T ss_pred             CcceeehhhccHHHhhcCCccc----ceeeeEecccc-cCcceeeeeehhccCCChhhHHHHHHHHHHHHhC------CC
Confidence            3444555666677899999999    99999987631 123456899998862   3456679999999999      59


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      ||||+++|++.      ..-.||||| ++.-|.|..|++.++.                            .++...+..
T Consensus       451 phIikLIGv~~------e~P~WivmE-L~~~GELr~yLq~nk~----------------------------sL~l~tL~l  495 (974)
T KOG4257|consen  451 PHIIKLIGVCV------EQPMWIVME-LAPLGELREYLQQNKD----------------------------SLPLRTLTL  495 (974)
T ss_pred             cchhheeeeee------ccceeEEEe-cccchhHHHHHHhccc----------------------------cchHHHHHH
Confidence            99999999996      567999999 9999999999998641                            233456778


Q ss_pred             HHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC----------CCCCCcccccCCCCCCchh
Q 005958          236 LMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG----------PNNSSPDSNMDRRQMMIAF  305 (667)
Q Consensus       236 i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~----------~~Y~APE~l~~~~~ys~ks  305 (667)
                      |++||+.||.|||+...|||||...|||+.+ ...+||+|||+++.+....          ..|||||.+ +-+.++.++
T Consensus       496 y~~Qi~talaYLeSkrfVHRDIAaRNiLVsS-p~CVKLaDFGLSR~~ed~~yYkaS~~kLPIKWmaPESI-NfRrFTtAS  573 (974)
T KOG4257|consen  496 YCYQICTALAYLESKRFVHRDIAARNILVSS-PQCVKLADFGLSRYLEDDAYYKASRGKLPIKWMAPESI-NFRRFTTAS  573 (974)
T ss_pred             HHHHHHHHHHHHHhhchhhhhhhhhheeecC-cceeeecccchhhhccccchhhccccccceeecCcccc-chhcccchh
Confidence            9999999999999999999999999999998 8899999999999877654          469999955 455599999


Q ss_pred             hHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          306 DMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       306 DIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      |||-|||++||++. |..||.+.....-+.            .         -+....++.++++++.+..|+.+||++|
T Consensus       574 DVWMFgVCmWEIl~lGvkPfqgvkNsDVI~------------~---------iEnGeRlP~P~nCPp~LYslmskcWaye  632 (974)
T KOG4257|consen  574 DVWMFGVCMWEILSLGVKPFQGVKNSDVIG------------H---------IENGERLPCPPNCPPALYSLMSKCWAYE  632 (974)
T ss_pred             hHHHHHHHHHHHHHhcCCccccccccceEE------------E---------ecCCCCCCCCCCCChHHHHHHHHHhccC
Confidence            99999999999987 899986432211110            0         1123456788999999999999999999


Q ss_pred             cCCCCCHHHHHc
Q 005958          385 PSKRISCLDALR  396 (667)
Q Consensus       385 P~kRpSa~elL~  396 (667)
                      |.+||...++..
T Consensus       633 P~kRPrftei~~  644 (974)
T KOG4257|consen  633 PSKRPRFTEIKA  644 (974)
T ss_pred             cccCCcHHHHHH
Confidence            999999887653

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.2e-34  Score=298.66  Aligned_cols=254  Identities=16%  Similarity=0.169  Sum_probs=203.3

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---------hHHHHHHHHHHHHHHhhccCCCC
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---------AQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---------~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      .++|-++..||+|+|+    .||+|.+..     ..+.||||+-....         ..+...||..|.+.|      +|
T Consensus       462 n~RYLlLhLLGrGGFS----EVyKAFDl~-----EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeL------DH  526 (775)
T KOG1151|consen  462 NDRYLLLHLLGRGGFS----EVYKAFDLT-----EQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKEL------DH  526 (775)
T ss_pred             HHHHHHHHHhccccHH----HHHHhcccc-----hhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhcc------Cc
Confidence            3678899999999999    999999998     78999999865321         123458999999999      69


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      |.||++|++|..    +.+.+|-|+| ||+|.||.-|++.++         -++|++                    ++.
T Consensus       527 pRIVKlYDyfsl----DtdsFCTVLE-YceGNDLDFYLKQhk---------lmSEKE--------------------ARS  572 (775)
T KOG1151|consen  527 PRIVKLYDYFSL----DTDSFCTVLE-YCEGNDLDFYLKQHK---------LMSEKE--------------------ARS  572 (775)
T ss_pred             ceeeeeeeeeee----ccccceeeee-ecCCCchhHHHHhhh---------hhhHHH--------------------HHH
Confidence            999999999972    6788999999 999999999999876         566655                    577


Q ss_pred             HHHHHHHHHHHHHHC--CCcccCCCCCcEEEcC--CCCeEEEeeecccccccCCC----------------CCCCCcccc
Q 005958          236 LMRDLLIGVNYLHSH--GLAHTELRLENVHISP--VDRHIKVGILGNAADFYEDG----------------PNNSSPDSN  295 (667)
Q Consensus       236 i~~QIl~aL~yLHs~--gIvHrDLKPeNILl~~--~~~~vKL~DFGlA~~~~~~~----------------~~Y~APE~l  295 (667)
                      |+.||+.||.||.+.  -|||-||||.|||+-.  .-|.+||+|||+++.+..+.                -.|.+||++
T Consensus       573 IiMQiVnAL~YLNEikpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcF  652 (775)
T KOG1151|consen  573 IIMQIVNALKYLNEIKPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECF  652 (775)
T ss_pred             HHHHHHHHHHHHhccCCCeeeeccCCccEEEecCcccceeEeeecchhhhccCCccCcccceeeecccCceeeecCccee
Confidence            999999999999987  4999999999999975  13689999999999776543                347899987


Q ss_pred             cCC---CCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHH
Q 005958          296 MDR---RQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGA  372 (667)
Q Consensus       296 ~~~---~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e  372 (667)
                      .-.   ...+.++||||+|||+|..++|+.||.....           ...+.+. ..++.    ...-.++..+.++.+
T Consensus       653 vVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqs-----------QQdILqe-NTIlk----AtEVqFP~KPvVsse  716 (775)
T KOG1151|consen  653 VVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQS-----------QQDILQE-NTILK----ATEVQFPPKPVVSSE  716 (775)
T ss_pred             ecCCCCCccccceeeEeeehhhhhhhccCCCCCCchh-----------HHHHHhh-hchhc----ceeccCCCCCccCHH
Confidence            633   4568899999999999999999999952110           0111111 01111    112234556788999


Q ss_pred             HHHHHHHhhhcCcCCCCCHHHHHcCCCCCCC
Q 005958          373 GWNLLSLLLATKPSKRISCLDALRHPFLCGP  403 (667)
Q Consensus       373 ~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~  403 (667)
                      +++||++||++.-+.|....++-.||||...
T Consensus       717 AkaFIRRCLaYRKeDR~DV~qLA~dpyllPh  747 (775)
T KOG1151|consen  717 AKAFIRRCLAYRKEDRIDVQQLACDPYLLPH  747 (775)
T ss_pred             HHHHHHHHHHhhhhhhhhHHHHccCccccch
Confidence            9999999999999999999999999999763

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.6e-33  Score=298.79  Aligned_cols=246  Identities=17%  Similarity=0.199  Sum_probs=205.3

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-HHHHHHHHHHHHHHhhccCCCCCc
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-QRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      ..+++...+..+..+||-|.||    .||.|.++.     ....||||.++.+.. .++++.|..+|+.++      |||
T Consensus       260 DkWEmeRtdItMkhKLGGGQYG----eVYeGvWKk-----yslTvAVKtLKEDtMeveEFLkEAAvMKeik------HpN  324 (1157)
T KOG4278|consen  260 DKWEMERTDITMKHKLGGGQYG----EVYEGVWKK-----YSLTVAVKTLKEDTMEVEEFLKEAAVMKEIK------HPN  324 (1157)
T ss_pred             chhhccchheeeeeccCCCccc----ceeeeeeec-----cceeeehhhhhhcchhHHHHHHHHHHHHhhc------Ccc
Confidence            3455555667788999999999    999999998     678999999987543 467899999999996      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      +|+++++|.     .+.-+|||+| ||..|+|.+|+++...-                           ..+.-.+..++
T Consensus       325 LVqLLGVCT-----~EpPFYIiTE-fM~yGNLLdYLRecnr~---------------------------ev~avvLlyMA  371 (1157)
T KOG4278|consen  325 LVQLLGVCT-----HEPPFYIITE-FMCYGNLLDYLRECNRS---------------------------EVPAVVLLYMA  371 (1157)
T ss_pred             HHHHhhhhc-----cCCCeEEEEe-cccCccHHHHHHHhchh---------------------------hcchhHHHHHH
Confidence            999999998     7889999999 99999999999986410                           01224567789


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC----------CCCCCcccccCCCCCCchhhH
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG----------PNNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~----------~~Y~APE~l~~~~~ys~ksDI  307 (667)
                      .||..|+.||..+++|||||...|+|+.+ +..+|++|||+++.+..+.          ..|.|||.+... .++.|+||
T Consensus       372 tQIsSaMeYLEkknFIHRDLAARNCLVgE-nhiVKvADFGLsRlMtgDTYTAHAGAKFPIKWTAPEsLAyN-tFSiKSDV  449 (1157)
T KOG4278|consen  372 TQISSAMEYLEKKNFIHRDLAARNCLVGE-NHIVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYN-TFSIKSDV  449 (1157)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhccccc-cceEEeeccchhhhhcCCceecccCccCcccccCccccccc-ccccchhh
Confidence            99999999999999999999999999999 8999999999999887664          468999966544 48999999


Q ss_pred             HHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          308 RCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       308 WSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      |+|||+|||+.| |-.||+            |.+..+..+.+.+.+.         ...+..+.+.+.+|+..||+++|.
T Consensus       450 WAFGVLLWEIATYGMsPYP------------GidlSqVY~LLEkgyR---------M~~PeGCPpkVYeLMraCW~WsPs  508 (1157)
T KOG4278|consen  450 WAFGVLLWEIATYGMSPYP------------GIDLSQVYGLLEKGYR---------MDGPEGCPPKVYELMRACWNWSPS  508 (1157)
T ss_pred             HHHHHHHHHHHhcCCCCCC------------CccHHHHHHHHhcccc---------ccCCCCCCHHHHHHHHHHhcCCcc
Confidence            999999999998 888886            4455555566554332         334567889999999999999999


Q ss_pred             CCCCHHHHH
Q 005958          387 KRISCLDAL  395 (667)
Q Consensus       387 kRpSa~elL  395 (667)
                      +||+.+|+-
T Consensus       509 DRPsFaeiH  517 (1157)
T KOG4278|consen  509 DRPSFAEIH  517 (1157)
T ss_pred             cCccHHHHH
Confidence            999998864

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.98  E-value=5.8e-33  Score=291.28  Aligned_cols=275  Identities=19%  Similarity=0.224  Sum_probs=211.3

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      .......|.++++||+|+|+    +||+|++...  ....+.||+|.+........+.+|+++|..+.     ++.||++
T Consensus        31 ~p~~~~~~~~v~kigeGsFs----sv~~a~~~~~--~~~~~~valk~i~~ts~p~ri~~El~~L~~~g-----G~~ni~~   99 (418)
T KOG1167|consen   31 IPFISNAYKVVNKIGEGSFS----SVYKATDIEQ--DTKRRYVALKAIYRTSSPSRILNELEMLYRLG-----GSDNIIK   99 (418)
T ss_pred             hhhhhhhhhhhccccccchh----hhhhhhHhhh--ccccceEeeeecccccCchHHHHHHHHHHHhc-----cchhhhc
Confidence            44556889999999999999    9999998762  22578999999998777888999999999998     8999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +.+++.     .++...+||| |++.-+..++...-.                                ...++.|++.+
T Consensus       100 ~~~~~r-----nnd~v~ivlp-~~~H~~f~~l~~~l~--------------------------------~~~i~~Yl~~l  141 (418)
T KOG1167|consen  100 LNGCFR-----NNDQVAIVLP-YFEHDRFRDLYRSLS--------------------------------LAEIRWYLRNL  141 (418)
T ss_pred             chhhhc-----cCCeeEEEec-ccCccCHHHHHhcCC--------------------------------HHHHHHHHHHH
Confidence            999998     8999999999 998878888877532                                35789999999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeeccccccc-----------------C--C----------------
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFY-----------------E--D----------------  285 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~-----------------~--~----------------  285 (667)
                      +.||.++|.+|||||||||.|+|.+...+.-.|+|||+|....                 .  +                
T Consensus       142 l~Al~~~h~~GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~~~d~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g  221 (418)
T KOG1167|consen  142 LKALAHLHKNGIVHRDIKPSNFLYNRRTQRGVLVDFGLAQRYDGYQQTEHSRSYSGRHATPAMGKDVHCQSVATASKPAG  221 (418)
T ss_pred             HHHhhhhhccCccccCCCccccccccccCCceEEechhHHHHHhhhhhhhhhhhhcccCCccccCcccccccccccCCCC
Confidence            9999999999999999999999999878899999999997210                 0  0                


Q ss_pred             ------------------CCCCCCcccccCCCCCCchhhHHHHHHHHHHHHhCCCCCh----hhhhhhhhhhccCCChh-
Q 005958          286 ------------------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDP----LIFTKFKSFLTKGIDPS-  342 (667)
Q Consensus       286 ------------------~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG~~PF~----~~~~~~~~~~~~g~~~~-  342 (667)
                                        .+.|+|||+++....-++++||||.|||+.-+++++.||-    +...+.++....|.... 
T Consensus       222 ~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~QttaiDiws~GVI~Lslls~~~PFf~a~dd~~al~ei~tifG~~~mr  301 (418)
T KOG1167|consen  222 YYRRCNDGRPSERANRAGTPGFRAPEVLFRCPRQTTAIDIWSAGVILLSLLSRRYPFFKAKDDADALAEIATIFGSAEMR  301 (418)
T ss_pred             ceeccCCCccceecccCCCCCCCchHHHhhccCcCCccceeeccceeehhhccccccccCccccchHHHHHHHhChHHHH
Confidence                              0568899999988888999999999999999999999975    22222222222221110 


Q ss_pred             ------------------HHHHHH---HHH-hccCC--CCCCCCc-ccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcC
Q 005958          343 ------------------CLREFL---LQV-LNRNS--SSGNTGF-QILDRNWGAGWNLLSLLLATKPSKRISCLDALRH  397 (667)
Q Consensus       343 ------------------~l~~~~---~~~-~~~~~--~~~~~~~-~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~H  397 (667)
                                        ...+..   ... .....  +..+... ...+..+..+.||+.+||+.||.+|+||+++|+|
T Consensus       302 k~A~l~g~~~l~~ksn~~~~~e~~~~f~s~~~~~~~~~~q~n~~~~~~~d~~~~~~~dlLdk~le~np~kRitAEeALkH  381 (418)
T KOG1167|consen  302 KCAALPGRILLWQKSNIPTIPELRVNFETLHIESIYKSRQPNTEREIGSDVFPALLLDLLDKCLELNPQKRITAEDALKH  381 (418)
T ss_pred             HHhhcCCceeeeccccccccHHHHhchhccChhhcccccccceeeccccccccHHHHHHHHHHccCChhhcccHHHHhcC
Confidence                              011111   000 00000  0000111 1223345589999999999999999999999999


Q ss_pred             CCCCCCC
Q 005958          398 PFLCGPR  404 (667)
Q Consensus       398 Pwf~~~~  404 (667)
                      |||.+..
T Consensus       382 pFF~~~~  388 (418)
T KOG1167|consen  382 PFFDEAD  388 (418)
T ss_pred             cCCcchh
Confidence            9999654

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.98  E-value=2.8e-31  Score=266.12  Aligned_cols=230  Identities=23%  Similarity=0.287  Sum_probs=185.2

Q ss_pred             eEEEEEEcCCCCCCCCcEEEEEEEcchhh---HHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEecccCCCCeEEEEEc
Q 005958          105 VVFEAIVKDSNSPLHNTKVVLRQLISVQA---QRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHG  181 (667)
Q Consensus       105 ~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~---~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE  181 (667)
                      .||+|.+..     +++.+|+|++.....   .+.+.+|++++++++      |+||+++++.+.     .....+++||
T Consensus         4 ~v~~~~~~~-----~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~------~~~i~~~~~~~~-----~~~~~~l~~e   67 (244)
T smart00220        4 KVYLARDKK-----TGKLVAIKVIKKEKIKKKRERILREISILKKLK------HPNIVRLYDVFE-----DEDKLYLVME   67 (244)
T ss_pred             EEEEEEECC-----CCcEEEEEEecccccccHHHHHHHHHHHHHhCC------CCcHHHHHhhee-----eCCEEEEEEe
Confidence            999999987     789999999976433   467789999999994      999999999998     6689999999


Q ss_pred             cCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCc
Q 005958          182 QYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLEN  261 (667)
Q Consensus       182 ~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeN  261 (667)
                       ++++++|.+++....         .+++                    ..+..++.+++.++.|||+.||+|+||+|.|
T Consensus        68 -~~~~~~L~~~~~~~~---------~~~~--------------------~~~~~~~~~l~~~l~~lh~~~i~h~~i~~~n  117 (244)
T smart00220       68 -YCDGGDLFDLLKKRG---------RLSE--------------------DEARFYARQILSALEYLHSNGIIHRDLKPEN  117 (244)
T ss_pred             -CCCCCCHHHHHHhcc---------CCCH--------------------HHHHHHHHHHHHHHHHHHHcCeecCCcCHHH
Confidence             999999999997643         1332                    4578899999999999999999999999999


Q ss_pred             EEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhh
Q 005958          262 VHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKS  333 (667)
Q Consensus       262 ILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~  333 (667)
                      |+++. ++.++|+|||.+......        ...|++||.+. ...++.++||||+|+++|+|++|..||...      
T Consensus       118 i~~~~-~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~pE~~~-~~~~~~~~Di~slG~~l~~l~~~~~p~~~~------  189 (244)
T smart00220      118 ILLDE-DGHVKLADFGLARQLDPGGLLTTFVGTPEYMAPEVLL-GKGYGKAVDVWSLGVILYELLTGKPPFPGD------  189 (244)
T ss_pred             eEECC-CCcEEEccccceeeeccccccccccCCcCCCCHHHHc-cCCCCchhhHHHHHHHHHHHHhCCCCCCCC------
Confidence            99998 799999999999876553        36799999554 556788999999999999999999998521      


Q ss_pred             hhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCC
Q 005958          334 FLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFL  400 (667)
Q Consensus       334 ~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf  400 (667)
                           .......+.+......       .......++.++.+++.+||..||++||++.++++||||
T Consensus       190 -----~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~~~~~~~  244 (244)
T smart00220      190 -----DQLLELFKKIGKPKPP-------FPPPEWKISPEAKDLIRKLLVKDPEKRLTAEEALQHPFF  244 (244)
T ss_pred             -----CcHHHHHHHHhccCCC-------CccccccCCHHHHHHHHHHccCCchhccCHHHHhhCCCC
Confidence                 1222222222111100       001111167799999999999999999999999999997

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.97  E-value=8.4e-32  Score=294.28  Aligned_cols=250  Identities=17%  Similarity=0.130  Sum_probs=203.3

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      +..++..+.++||+|.||    +|++|.+...+.  +.-.||||+++..   ....++.+|+.+|.+|+      |||++
T Consensus       107 Ipee~i~l~e~LG~GsFg----vV~rg~Wt~psg--k~V~VAVKclr~d~l~~~mddflrEas~M~~L~------H~hli  174 (1039)
T KOG0199|consen  107 IPEEQIKLYELLGEGSFG----VVKRGTWTQPSG--KHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQ------HPHLI  174 (1039)
T ss_pred             ccHHHHHHHHHhcCccee----eEeeccccCCCC--cEEeEEEEeccCCccchhHHHHHHHHHHHHhcc------Cccee
Confidence            445677888999999999    999999987422  4467999999863   24467899999999995      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++||+..     + ..+.|||| ++.+|+|.+.|.+..                           ...+....+..|+.|
T Consensus       175 RLyGvVl-----~-qp~mMV~E-LaplGSLldrLrka~---------------------------~~~llv~~Lcdya~Q  220 (1039)
T KOG0199|consen  175 RLYGVVL-----D-QPAMMVFE-LAPLGSLLDRLRKAK---------------------------KAILLVSRLCDYAMQ  220 (1039)
T ss_pred             EEeeeec-----c-chhhHHhh-hcccchHHHHHhhcc---------------------------ccceeHHHHHHHHHH
Confidence            9999998     4 67899999 999999999998721                           012223567889999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCCC------------CCCCcccccCCCCCCchhhH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGP------------NNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~~------------~Y~APE~l~~~~~ys~ksDI  307 (667)
                      |+.|+.||.++++|||||...|+|+.. ...|||+|||+.+.+..+..            .|.|||.+ ....++.++|+
T Consensus       221 iA~aM~YLeskrlvHRDLAARNlllas-prtVKI~DFGLmRaLg~ned~Yvm~p~rkvPfAWCaPEsL-rh~kFShaSDv  298 (1039)
T KOG0199|consen  221 IAKAMQYLESKRLVHRDLAARNLLLAS-PRTVKICDFGLMRALGENEDMYVMAPQRKVPFAWCAPESL-RHRKFSHASDV  298 (1039)
T ss_pred             HHHHHHHHhhhhhhhhhhhhhhheecc-cceeeeecccceeccCCCCcceEecCCCcCcccccCHhHh-ccccccccchh
Confidence            999999999999999999999999998 88999999999998887763            35699955 45569999999


Q ss_pred             HHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          308 RCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       308 WSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      |++||+||||++ |+-||.            |-...++.+.+.         ....++..+.+++++.+++..||..+|.
T Consensus       299 WmyGVTiWEMFtyGEePW~------------G~~g~qIL~~iD---------~~erLpRPk~csedIY~imk~cWah~pa  357 (1039)
T KOG0199|consen  299 WMYGVTIWEMFTYGEEPWV------------GCRGIQILKNID---------AGERLPRPKYCSEDIYQIMKNCWAHNPA  357 (1039)
T ss_pred             hhhhhhHHhhhccCCCCCC------------CCCHHHHHHhcc---------ccccCCCCCCChHHHHHHHHHhccCCcc
Confidence            999999999998 788874            444444444332         2234556678999999999999999999


Q ss_pred             CCCCHHHHHcCCCCC
Q 005958          387 KRISCLDALRHPFLC  401 (667)
Q Consensus       387 kRpSa~elL~HPwf~  401 (667)
                      +|||+..|.+.-++.
T Consensus       358 DRptFsair~~~~l~  372 (1039)
T KOG0199|consen  358 DRPTFSAIREDLVLA  372 (1039)
T ss_pred             ccccHHHHHHhHHHH
Confidence            999999886554443

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.97  E-value=8.8e-32  Score=258.60  Aligned_cols=198  Identities=14%  Similarity=0.236  Sum_probs=167.4

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcc---hhhHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS---VQAQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~---~~~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      .++..++...+..||+|+||    +|-+.++..     +|...|+|.+..   .+..++..+|+.+..+..     ++|+
T Consensus        41 ~eV~ad~L~~i~elGrGayG----~vekmrh~~-----sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~-----~CPf  106 (282)
T KOG0984|consen   41 FEVPADDLVGIEELGRGAYG----VVEKMRHIQ-----SGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTV-----DCPF  106 (282)
T ss_pred             cccchhhhhhhhhhcCCccc----hhhheeecc-----CCeEEEEeeehhhcChHHHHHHHHhhhhhccCC-----CCCe
Confidence            44555777788999999999    999999998     899999999975   455567789999888776     7999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      +|.+||.+.     ..+.+||.|| .|+. +|..+.++-     +.....++                    +..+-.|+
T Consensus       107 ~V~FyGa~~-----regdvwIcME-~M~t-Sldkfy~~v-----~~~g~~ip--------------------E~vlGkIa  154 (282)
T KOG0984|consen  107 TVHFYGALF-----REGDVWICME-LMDT-SLDKFYRKV-----LKKGGTIP--------------------EDVLGKIA  154 (282)
T ss_pred             EEEeehhhh-----ccccEEEeHH-Hhhh-hHHHHHHHH-----HhcCCcCc--------------------hHHhhHhH
Confidence            999999988     8899999999 9998 998876642     11223444                    46788899


Q ss_pred             HHHHHHHHHHHHC-CCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCccccc---CCCCCCchh
Q 005958          238 RDLLIGVNYLHSH-GLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNM---DRRQMMIAF  305 (667)
Q Consensus       238 ~QIl~aL~yLHs~-gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~---~~~~ys~ks  305 (667)
                      ..++.||.|||++ .|||||+||+||||+. +|++|+||||.+-.+.+.        -..|||||.+.   +...|+.++
T Consensus       155 ~Svv~al~~L~~kL~vIHRDvKPsNiLIn~-~GqVKiCDFGIsG~L~dSiAkt~daGCkpYmaPEri~~e~n~~gY~vks  233 (282)
T KOG0984|consen  155 VSVVHALEFLHSKLSVIHRDVKPSNILINY-DGQVKICDFGISGYLVDSIAKTMDAGCKPYMAPERINPELNQKGYSVKS  233 (282)
T ss_pred             HHHHHHHHHHHHHhhhhhccCCcceEEEcc-CCcEEEcccccceeehhhhHHHHhcCCCccCChhhcCcccCcccceeeh
Confidence            9999999999987 8999999999999999 999999999998765443        36899999654   445799999


Q ss_pred             hHHHHHHHHHHHHhCCCCCh
Q 005958          306 DMRCVGFMMAKMVLRELMDP  325 (667)
Q Consensus       306 DIWSLGviLyemltG~~PF~  325 (667)
                      ||||||++++||.+++.||+
T Consensus       234 DvWSLGItmiElA~lr~PY~  253 (282)
T KOG0984|consen  234 DVWSLGITMIEMAILRFPYE  253 (282)
T ss_pred             hhhhhhhhhhhhhhcccccc
Confidence            99999999999999999986

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.97  E-value=2e-31  Score=295.00  Aligned_cols=248  Identities=16%  Similarity=0.156  Sum_probs=202.8

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcc---hhhHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS---VQAQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~---~~~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      .++......|.++||.|.||    .|++|+.+..+.  ....||||.++.   .+...+++.|..||-++      +|||
T Consensus       624 kEId~s~i~Ie~VIGaGEFG----EVc~GrLk~pgk--re~~VAIKTLK~GytekqrrdFL~EAsIMGQF------dHPN  691 (996)
T KOG0196|consen  624 KEIDPSCVKIEKVIGAGEFG----EVCSGRLKLPGK--REITVAIKTLKAGYTEKQRRDFLSEASIMGQF------DHPN  691 (996)
T ss_pred             hhcChhheEEEEEEeccccc----ceecccccCCCC--cceeEEEeeeccCccHHHHhhhhhhhhhcccC------CCCc
Confidence            34566788999999999999    999999987432  346899999986   44556789999999999      5999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |++|.|+..     ...-+.||+| ||++|+|..+|+++.        ..|+                    .-++.-++
T Consensus       692 IIrLEGVVT-----ks~PvMIiTE-yMENGsLDsFLR~~D--------Gqft--------------------viQLVgML  737 (996)
T KOG0196|consen  692 IIRLEGVVT-----KSKPVMIITE-YMENGSLDSFLRQND--------GQFT--------------------VIQLVGML  737 (996)
T ss_pred             EEEEEEEEe-----cCceeEEEhh-hhhCCcHHHHHhhcC--------CceE--------------------eehHHHHH
Confidence            999999999     8889999999 999999999999865        1222                    23466789


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC------------CCCCCcccccCCCCCCchh
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG------------PNNSSPDSNMDRRQMMIAF  305 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~------------~~Y~APE~l~~~~~ys~ks  305 (667)
                      +.|+.|++||-+.|+|||||...|||++. +-.+|++|||+++.+.++.            ..|.|||.+. .+.++.++
T Consensus       738 rGIAsGMkYLsdm~YVHRDLAARNILVNs-nLvCKVsDFGLSRvledd~~~~ytt~GGKIPiRWTAPEAIa-~RKFTsAS  815 (996)
T KOG0196|consen  738 RGIASGMKYLSDMNYVHRDLAARNILVNS-NLVCKVSDFGLSRVLEDDPEAAYTTLGGKIPIRWTAPEAIA-YRKFTSAS  815 (996)
T ss_pred             HHHHHHhHHHhhcCchhhhhhhhheeecc-ceEEEeccccceeecccCCCccccccCCccceeecChhHhh-hcccCchh
Confidence            99999999999999999999999999999 8999999999999876654            3577999554 45599999


Q ss_pred             hHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          306 DMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       306 DIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      ||||+||++||.++ |+.||++..            ..+..+.+...         ..++.+-.++..+..|+..||++|
T Consensus       816 DVWSyGIVmWEVmSyGERPYWdmS------------NQdVIkaIe~g---------yRLPpPmDCP~aL~qLMldCWqkd  874 (996)
T KOG0196|consen  816 DVWSYGIVMWEVMSYGERPYWDMS------------NQDVIKAIEQG---------YRLPPPMDCPAALYQLMLDCWQKD  874 (996)
T ss_pred             hccccceEEEEecccCCCcccccc------------hHHHHHHHHhc---------cCCCCCCCCcHHHHHHHHHHHHHH
Confidence            99999999999775 988886321            12222222222         234555678899999999999999


Q ss_pred             cCCCCCHHHHHcC
Q 005958          385 PSKRISCLDALRH  397 (667)
Q Consensus       385 P~kRpSa~elL~H  397 (667)
                      -.+||...||+.+
T Consensus       875 R~~RP~F~qiV~~  887 (996)
T KOG0196|consen  875 RNRRPKFAQIVST  887 (996)
T ss_pred             hhcCCCHHHHHHH
Confidence            9999999998863

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=1.5e-30  Score=316.06  Aligned_cols=244  Identities=16%  Similarity=0.201  Sum_probs=178.5

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYV  165 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~  165 (667)
                      ..|...+.||+|+||    .||+|++..     ++..||||.+.....  ....|+++++++      +|||||++++++
T Consensus       690 ~~~~~~~~ig~G~~g----~Vy~~~~~~-----~~~~vavK~~~~~~~--~~~~~~~~l~~l------~HpnIv~~~~~~  752 (968)
T PLN00113        690 SSLKEENVISRGKKG----ASYKGKSIK-----NGMQFVVKEINDVNS--IPSSEIADMGKL------QHPNIVKLIGLC  752 (968)
T ss_pred             hhCCcccEEccCCCe----eEEEEEECC-----CCcEEEEEEccCCcc--ccHHHHHHHhhC------CCCCcceEEEEE
Confidence            456777899999999    999999987     789999999865322  224578888888      499999999999


Q ss_pred             EecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHH
Q 005958          166 SSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVN  245 (667)
Q Consensus       166 ~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~  245 (667)
                      .     +.+..|+||| |+++|+|.++++.            +++                    ..+..++.||+.||+
T Consensus       753 ~-----~~~~~~lv~E-y~~~g~L~~~l~~------------l~~--------------------~~~~~i~~~ia~~L~  794 (968)
T PLN00113        753 R-----SEKGAYLIHE-YIEGKNLSEVLRN------------LSW--------------------ERRRKIAIGIAKALR  794 (968)
T ss_pred             E-----cCCCCEEEEe-CCCCCcHHHHHhc------------CCH--------------------HHHHHHHHHHHHHHH
Confidence            8     6778999999 9999999999963            232                    345779999999999


Q ss_pred             HHH---HCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-----CCCCCCCcccccCCCCCCchhhHHHHHHHHHHH
Q 005958          246 YLH---SHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-----DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKM  317 (667)
Q Consensus       246 yLH---s~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-----~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyem  317 (667)
                      |||   +.+|+||||||+||+++. ++..++. ||.+.....     ..+.|+|||++ ....|+.++|||||||++|||
T Consensus       795 yLH~~~~~~iiH~dlkp~Nil~~~-~~~~~~~-~~~~~~~~~~~~~~~t~~y~aPE~~-~~~~~~~~sDv~S~Gvvl~el  871 (968)
T PLN00113        795 FLHCRCSPAVVVGNLSPEKIIIDG-KDEPHLR-LSLPGLLCTDTKCFISSAYVAPETR-ETKDITEKSDIYGFGLILIEL  871 (968)
T ss_pred             HhccCCCCCeecCCCCHHhEEECC-CCceEEE-eccccccccCCCccccccccCcccc-cCCCCCcccchhhHHHHHHHH
Confidence            999   669999999999999997 6666664 665543322     23789999965 455699999999999999999


Q ss_pred             HhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccC------CCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH
Q 005958          318 VLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRN------SSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC  391 (667)
Q Consensus       318 ltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa  391 (667)
                      ++|+.||....         +. ...+.++........      .+..............++.+++.+||+.||++|||+
T Consensus       872 ~tg~~p~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~~P~~RPt~  941 (968)
T PLN00113        872 LTGKSPADAEF---------GV-HGSIVEWARYCYSDCHLDMWIDPSIRGDVSVNQNEIVEVMNLALHCTATDPTARPCA  941 (968)
T ss_pred             HhCCCCCCccc---------CC-CCcHHHHHHHhcCccchhheeCccccCCCCccHHHHHHHHHHHHhhCcCCchhCcCH
Confidence            99999984211         00 001111111110000      000000011111223467899999999999999999


Q ss_pred             HHHHcC
Q 005958          392 LDALRH  397 (667)
Q Consensus       392 ~elL~H  397 (667)
                      .|+++.
T Consensus       942 ~evl~~  947 (968)
T PLN00113        942 NDVLKT  947 (968)
T ss_pred             HHHHHH
Confidence            999874

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.97  E-value=8.3e-30  Score=293.59  Aligned_cols=266  Identities=17%  Similarity=0.211  Sum_probs=205.0

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCC--CCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSP--LHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMY  154 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~--~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~  154 (667)
                      .+++..++.++.+.||+|+||    .|++|.-......  .....||||.++..   ...+.+..|+++|+.+.     .
T Consensus       290 ~~e~~~~~l~~~~~lg~g~fG----~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g-----~  360 (609)
T KOG0200|consen  290 KWEIPRENLKLGKYLGEGAFG----QVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELG-----K  360 (609)
T ss_pred             ceeechhhccccceeeccccc----ceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhc-----C
Confidence            455555667788899999999    9999986532111  12578999998853   23466799999999998     7


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      ||||+.+.+++.     ..+.+++|+| |+..|+|.++++.++....+.......             .....+...++.
T Consensus       361 H~niv~llG~~t-----~~~~~~~v~E-y~~~G~L~~~Lr~~r~~~~~~~~~~~~-------------~~~~~L~~~dLl  421 (609)
T KOG0200|consen  361 HPNIVNLLGACT-----QDGPLYVIVE-YAEHGDLLEFLRKKRVTESIDGSGVFP-------------NERDALTTKDLL  421 (609)
T ss_pred             Ccchhhheeeec-----cCCceEEEEE-eccCCcHHHHHHhccccccccccCCCc-------------cccCCcCHHHHH
Confidence            999999999998     6889999999 999999999999865111111100000             000245668899


Q ss_pred             HHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC------------CCCCCcccccCCCCCC
Q 005958          235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG------------PNNSSPDSNMDRRQMM  302 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~------------~~Y~APE~l~~~~~ys  302 (667)
                      .++.||+.|++||++..+|||||-..|||++. +..+||+|||+|+......            ..|||||.+.. ..|+
T Consensus       422 sfa~QIa~GMe~L~~~~~vHRDLAaRNVLi~~-~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~-~~ft  499 (609)
T KOG0200|consen  422 SFAYQIANGMEYLASVPCVHRDLAARNVLITK-NKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFD-RVFT  499 (609)
T ss_pred             HHHHHHHHHHHHHhhCCccchhhhhhhEEecC-CCEEEEccccceeccCCCCceEecCCCCccceeecCHHHhcc-Cccc
Confidence            99999999999999999999999999999998 8899999999998543322            34999997666 7799


Q ss_pred             chhhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCC-hhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHh
Q 005958          303 IAFDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGID-PSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLL  380 (667)
Q Consensus       303 ~ksDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~  380 (667)
                      .++||||+||+||||++ |..||++            .+ ...+.+++...         .....+..+++++.++++.|
T Consensus       500 ~kSDVWSfGI~L~EifsLG~~PYp~------------~~~~~~l~~~l~~G---------~r~~~P~~c~~eiY~iM~~C  558 (609)
T KOG0200|consen  500 SKSDVWSFGILLWEIFTLGGTPYPG------------IPPTEELLEFLKEG---------NRMEQPEHCSDEIYDLMKSC  558 (609)
T ss_pred             ccchhhHHHHHHHHHhhCCCCCCCC------------CCcHHHHHHHHhcC---------CCCCCCCCCCHHHHHHHHHH
Confidence            99999999999999998 8888863            22 23333333221         12344567789999999999


Q ss_pred             hhcCcCCCCCHHHHHc
Q 005958          381 LATKPSKRISCLDALR  396 (667)
Q Consensus       381 L~~DP~kRpSa~elL~  396 (667)
                      |+.+|++||+..++.+
T Consensus       559 W~~~p~~RP~F~~~~~  574 (609)
T KOG0200|consen  559 WNADPEDRPTFSECVE  574 (609)
T ss_pred             hCCCcccCCCHHHHHH
Confidence            9999999999998764

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.97  E-value=1.1e-30  Score=281.07  Aligned_cols=196  Identities=19%  Similarity=0.306  Sum_probs=170.0

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHH----------HHHHHHHHHHHHhhccC
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQR----------RGRRAIEVLKKLVRRRL  152 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~----------~~~rEi~iL~~L~~~~~  152 (667)
                      -...+|..++.+|+|+||    .|++|.++.     ....|+||.|.+.....          .+-.||+||..|...  
T Consensus       558 ~k~s~yttlq~lG~GAyG----kV~lai~K~-----n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~--  626 (772)
T KOG1152|consen  558 KKFSDYTTLQPLGEGAYG----KVNLAIHKE-----NNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKH--  626 (772)
T ss_pred             cccccceeeeeccccccc----eEEEeeecc-----cceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhc--
Confidence            345789999999999999    999999998     78999999998754321          226799999999532  


Q ss_pred             CCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHH
Q 005958          153 MYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRL  232 (667)
Q Consensus       153 ~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~  232 (667)
                       .|+||++++++|+     +++++||+||-.-++-||+++|..+.         .++|.+                    
T Consensus       627 -sH~NIlKlLdfFE-----ddd~yyl~te~hg~gIDLFd~IE~kp---------~m~E~e--------------------  671 (772)
T KOG1152|consen  627 -SHENILKLLDFFE-----DDDYYYLETEVHGEGIDLFDFIEFKP---------RMDEPE--------------------  671 (772)
T ss_pred             -Cccchhhhhheee-----cCCeeEEEecCCCCCcchhhhhhccC---------ccchHH--------------------
Confidence             5999999999999     89999999995556789999999865         677755                    


Q ss_pred             HHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-------CCCCCcccccCCCCCCchh
Q 005958          233 IRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-------PNNSSPDSNMDRRQMMIAF  305 (667)
Q Consensus       233 i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-------~~Y~APE~l~~~~~ys~ks  305 (667)
                      .+.|++|++.|+++||+.||||||||-+|++++. +|-+||+|||.|.....+.       ..|.|||++.+..+.+..-
T Consensus       672 Ak~IFkQV~agi~hlh~~~ivhrdikdenvivd~-~g~~klidfgsaa~~ksgpfd~f~gtv~~aapevl~g~~y~gk~q  750 (772)
T KOG1152|consen  672 AKLIFKQVVAGIKHLHDQGIVHRDIKDENVIVDS-NGFVKLIDFGSAAYTKSGPFDVFVGTVDYAAPEVLGGEKYLGKPQ  750 (772)
T ss_pred             HHHHHHHHHhccccccccCceecccccccEEEec-CCeEEEeeccchhhhcCCCcceeeeeccccchhhhCCCccCCCcc
Confidence            4679999999999999999999999999999999 9999999999998776654       6799999777777669999


Q ss_pred             hHHHHHHHHHHHHhCCCCCh
Q 005958          306 DMRCVGFMMAKMVLRELMDP  325 (667)
Q Consensus       306 DIWSLGviLyemltG~~PF~  325 (667)
                      |||++|++||.+++.+.||.
T Consensus       751 diwalgillytivykenpyy  770 (772)
T KOG1152|consen  751 DIWALGILLYTIVYKENPYY  770 (772)
T ss_pred             hhhhhhheeeEEEeccCCCc
Confidence            99999999999999998873

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.97  E-value=7.8e-32  Score=294.19  Aligned_cols=252  Identities=19%  Similarity=0.234  Sum_probs=207.1

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ..++|+++..+|.|+||    .||+|+++.     +++..|+|+++...  +..-+..||-+++..+      |||||.+
T Consensus        13 P~ddyellqrvgsgTyg----dvyKaRd~~-----s~elaavkvVkLep~dd~~~iqqei~~~~dc~------h~nivay   77 (829)
T KOG0576|consen   13 PQDDYELLQRVGSGTYG----DVYKARDKR-----SGELAAVKVVKLEPGDDFSGIQQEIGMLRDCR------HPNIVAY   77 (829)
T ss_pred             CccchhheeeecCCccc----chhhhcccc-----cCchhhheeeeccCCccccccccceeeeecCC------CcChHHH
Confidence            34889999999999999    999999998     89999999998633  3344578999999995      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++.|.     ..+.+||+|| ||++|+|.++-.-.+         .++|                    .+|.+..++.+
T Consensus        78 ~gsyl-----r~dklwicME-ycgggslQdiy~~Tg---------plse--------------------lqiayvcRetl  122 (829)
T KOG0576|consen   78 FGSYL-----RRDKLWICME-YCGGGSLQDIYHVTG---------PLSE--------------------LQIAYVCRETL  122 (829)
T ss_pred             Hhhhh-----hhcCcEEEEE-ecCCCcccceeeecc---------cchh--------------------HHHHHHHhhhh
Confidence            99998     8889999999 999999999877644         6665                    46889999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeeccccccc---------CCCCCCCCccccc--CCCCCCchhhHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFY---------EDGPNNSSPDSNM--DRRQMMIAFDMRCV  310 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~---------~~~~~Y~APE~l~--~~~~ys~ksDIWSL  310 (667)
                      +||+|||+.|-+|||||-.|||+++ .|.+|++|||.+..+.         .+.++|||||+..  ..+.|+..+|||++
T Consensus       123 ~gl~ylhs~gk~hRdiKGanilltd-~gDvklaDfgvsaqitati~KrksfiGtpywmapEvaaverkggynqlcdiwa~  201 (829)
T KOG0576|consen  123 QGLKYLHSQGKIHRDIKGANILLTD-EGDVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAL  201 (829)
T ss_pred             ccchhhhcCCcccccccccceeecc-cCceeecccCchhhhhhhhhhhhcccCCccccchhHHHHHhccccccccccccc
Confidence            9999999999999999999999999 9999999999987654         2449999999643  56679999999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      |++..|+---++|.-+..++-              ..+..   ..+-+....+......++.+.+|++.+|..+|++||+
T Consensus       202 gitAiel~eLqpplfdlhpmr--------------~l~Lm---TkS~~qpp~lkDk~kws~~fh~fvK~altknpKkRpt  264 (829)
T KOG0576|consen  202 GITAIELGELQPPLFDLHPMR--------------ALFLM---TKSGFQPPTLKDKTKWSEFFHNFVKGALTKNPKKRPT  264 (829)
T ss_pred             ccchhhhhhcCCcccccchHH--------------HHHHh---hccCCCCCcccCCccchHHHHHHHHHHhcCCCccCCC
Confidence            999999998888743222211              11111   1111122233445567889999999999999999999


Q ss_pred             HHHHHcCCCCCCC
Q 005958          391 CLDALRHPFLCGP  403 (667)
Q Consensus       391 a~elL~HPwf~~~  403 (667)
                      ++.+|+|||....
T Consensus       265 aeklL~h~fvs~~  277 (829)
T KOG0576|consen  265 AEKLLQHPFVSQT  277 (829)
T ss_pred             hhhheeceeeccc
Confidence            9999999999764

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=1.3e-29  Score=266.84  Aligned_cols=256  Identities=17%  Similarity=0.183  Sum_probs=185.8

Q ss_pred             CCcccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCC
Q 005958           77 SGHVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        77 ~~~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      |....+....+..+.+.||+|.||    .||+|.++       |+.||||++... +++...||.+|.+..    .+.|+
T Consensus       202 plLVQRTiarqI~L~e~IGkGRyG----EVwrG~wr-------Ge~VAVKiF~sr-dE~SWfrEtEIYqTv----mLRHE  265 (513)
T KOG2052|consen  202 PLLVQRTIARQIVLQEIIGKGRFG----EVWRGRWR-------GEDVAVKIFSSR-DERSWFRETEIYQTV----MLRHE  265 (513)
T ss_pred             hhHhHHhhhheeEEEEEecCcccc----ceeecccc-------CCceEEEEeccc-chhhhhhHHHHHHHH----Hhccc
Confidence            334555666889999999999999    99999998       689999998764 456678899998875    24699


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+.+++.-... ...-..+|||++ |.+.|||+|||.++          .++-+                    ....+
T Consensus       266 NILgFIaaD~~~-~gs~TQLwLvTd-YHe~GSL~DyL~r~----------tv~~~--------------------~ml~L  313 (513)
T KOG2052|consen  266 NILGFIAADNKD-NGSWTQLWLVTD-YHEHGSLYDYLNRN----------TVTTE--------------------GMLKL  313 (513)
T ss_pred             hhhhhhhccccC-CCceEEEEEeee-cccCCcHHHHHhhc----------cCCHH--------------------HHHHH
Confidence            999999876522 124458999999 99999999999984          45543                    45669


Q ss_pred             HHHHHHHHHHHHHC--------CCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-------------CCCCCcccc
Q 005958          237 MRDLLIGVNYLHSH--------GLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-------------PNNSSPDSN  295 (667)
Q Consensus       237 ~~QIl~aL~yLHs~--------gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-------------~~Y~APE~l  295 (667)
                      +..++.||+|||-.        .|.|||||..|||+.+ ++.+.|+|+|+|.......             ..|||||++
T Consensus       314 alS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKk-n~~C~IADLGLAv~h~~~t~~idi~~N~rVGTKRYMAPEvL  392 (513)
T KOG2052|consen  314 ALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKK-NGTCCIADLGLAVRHDSDTDTIDIPPNPRVGTKRYMAPEVL  392 (513)
T ss_pred             HHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEcc-CCcEEEeeceeeEEecccCCcccCCCCCccceeeccChHHh
Confidence            99999999999963        4999999999999999 9999999999998766542             579999976


Q ss_pred             cCCCCC-----CchhhHHHHHHHHHHHHhCC----------CCChhhhhhhhhhhccCCChhHHHHHHHH-HhccCCCCC
Q 005958          296 MDRRQM-----MIAFDMRCVGFMMAKMVLRE----------LMDPLIFTKFKSFLTKGIDPSCLREFLLQ-VLNRNSSSG  359 (667)
Q Consensus       296 ~~~~~y-----s~ksDIWSLGviLyemltG~----------~PF~~~~~~~~~~~~~g~~~~~l~~~~~~-~~~~~~~~~  359 (667)
                      -..-..     -..+||||||.|+||++.+.          +||.+.       ...+...+++.+.+.- .+....+. 
T Consensus       393 detin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~-------Vp~DPs~eeMrkVVCv~~~RP~ipn-  464 (513)
T KOG2052|consen  393 DETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDV-------VPSDPSFEEMRKVVCVQKLRPNIPN-  464 (513)
T ss_pred             hhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccC-------CCCCCCHHHHhcceeecccCCCCCc-
Confidence            433221     13689999999999998743          344211       1112222333333211 01100110 


Q ss_pred             CCCcccccCCCH---HHHHHHHHhhhcCcCCCCCHHHHH
Q 005958          360 NTGFQILDRNWG---AGWNLLSLLLATKPSKRISCLDAL  395 (667)
Q Consensus       360 ~~~~~~~~~~s~---e~~dLI~~~L~~DP~kRpSa~elL  395 (667)
                           .+ ...+   .+-.+++.||..||.-|.||-.+.
T Consensus       465 -----rW-~s~~~l~~m~klMkeCW~~Np~aRltALriK  497 (513)
T KOG2052|consen  465 -----RW-KSDPALRVMAKLMKECWYANPAARLTALRIK  497 (513)
T ss_pred             -----cc-ccCHHHHHHHHHHHHhhcCCchhhhHHHHHH
Confidence                 01 1122   456889999999999999986654

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.96  E-value=1.8e-29  Score=267.49  Aligned_cols=256  Identities=16%  Similarity=0.192  Sum_probs=189.8

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ......++.+.||+|.||    .||+|...       ++.||||++... ....+.+|-+|.+..    .|.|+||++++
T Consensus       207 ~~l~pl~l~eli~~Grfg----~V~KaqL~-------~~~VAVKifp~~-~kqs~~~Ek~Iy~lp----~m~h~nIl~Fi  270 (534)
T KOG3653|consen  207 LELDPLQLLELIGRGRFG----CVWKAQLD-------NRLVAVKIFPEQ-EKQSFQNEKNIYSLP----GMKHENILQFI  270 (534)
T ss_pred             ccCCchhhHHHhhcCccc----eeehhhcc-------CceeEEEecCHH-HHHHHHhHHHHHhcc----CccchhHHHhh
Confidence            446778899999999999    99999876       489999998754 445678888887765    45799999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      ++-.-. ......++||+| |.+.|+|.+|++.+.          ++                    +.....++..|++
T Consensus       271 ~~ekr~-t~~~~eywLVt~-fh~kGsL~dyL~~nt----------is--------------------w~~~cria~Smar  318 (534)
T KOG3653|consen  271 GAEKRG-TADRMEYWLVTE-FHPKGSLCDYLKANT----------IS--------------------WNSLCRIAESMAR  318 (534)
T ss_pred             chhccC-CccccceeEEee-eccCCcHHHHHHhcc----------cc--------------------HHHHHHHHHHHHH
Confidence            987621 113458999999 999999999999862          33                    3456779999999


Q ss_pred             HHHHHHHC---------CCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-----------CCCCCcccccCCCCCC
Q 005958          243 GVNYLHSH---------GLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-----------PNNSSPDSNMDRRQMM  302 (667)
Q Consensus       243 aL~yLHs~---------gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-----------~~Y~APE~l~~~~~ys  302 (667)
                      ||+|||+.         .|+|||||..|||+.. |++..|+|||+|..+..+.           ..|||||++.+.-.+.
T Consensus       319 GLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~-DlTccIaDFGLAl~~~p~~~~~d~~~qVGT~RYMAPEvLEgainl~  397 (534)
T KOG3653|consen  319 GLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKN-DLTCCIADFGLALRLEPGKPQGDTHGQVGTRRYMAPEVLEGAINLQ  397 (534)
T ss_pred             HHHHhcccCCcCCCCCCccccccccccceEEcc-CCcEEeeccceeEEecCCCCCcchhhhhhhhhhcCHHHHhhhcccc
Confidence            99999973         5999999999999999 9999999999999887553           6799999776555444


Q ss_pred             -----chhhHHHHHHHHHHHHhCCCCCh-----hhhhhhhhhhccCCCh--hHHHHHHHHHhccC-CCCCCCCcccccCC
Q 005958          303 -----IAFDMRCVGFMMAKMVLRELMDP-----LIFTKFKSFLTKGIDP--SCLREFLLQVLNRN-SSSGNTGFQILDRN  369 (667)
Q Consensus       303 -----~ksDIWSLGviLyemltG~~PF~-----~~~~~~~~~~~~g~~~--~~l~~~~~~~~~~~-~~~~~~~~~~~~~~  369 (667)
                           ..+||||+|.|||||+++..-+.     +....|+.  ..|..|  +++++++......+ .+......    ..
T Consensus       398 d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~--evG~hPt~e~mq~~VV~kK~RP~~p~~W~~h----~~  471 (534)
T KOG3653|consen  398 DRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEA--EVGNHPTLEEMQELVVRKKQRPKIPDAWRKH----AG  471 (534)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhH--HhcCCCCHHHHHHHHHhhccCCCChhhhhcC----cc
Confidence                 37899999999999999875542     11122221  223333  45555543322111 11111111    11


Q ss_pred             CHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          370 WGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       370 s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      -.-+++.+..||..||+-|+||.=
T Consensus       472 ~~~l~et~EeCWDhDaeARLTA~C  495 (534)
T KOG3653|consen  472 MAVLCETIEECWDHDAEARLTAGC  495 (534)
T ss_pred             HHHHHHHHHHHcCCchhhhhhhHH
Confidence            246889999999999999999853

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.96  E-value=2.5e-29  Score=279.08  Aligned_cols=243  Identities=16%  Similarity=0.132  Sum_probs=198.4

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ...+..++||.|+||    +||+|.+... ...-+.+||||++....   ...++..|.-+|.++      +|||+++++
T Consensus       696 telkk~kvLGsgAfG----tV~kGiw~Pe-ge~vKipVaiKvl~~~t~~~~s~e~LdeAl~masl------dHpnl~RLL  764 (1177)
T KOG1025|consen  696 TELKKDKVLGSGAFG----TVYKGIWIPE-GENVKIPVAIKVLIEFTSPKASIELLDEALRMASL------DHPNLLRLL  764 (1177)
T ss_pred             hhhhhhceeccccce----eEEeeeEecC-CceecceeEEEEeeccCCchhhHHHHHHHHHHhcC------CCchHHHHh
Confidence            445667899999999    9999999864 22235689999987632   346789999999999      599999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     . ..+-||++ |++.|+|.+|++.++.                            .+.......|.+||++
T Consensus       765 gvc~-----~-s~~qlvtq-~mP~G~LlDyvr~hr~----------------------------~igsq~lLnw~~QIAk  809 (1177)
T KOG1025|consen  765 GVCM-----L-STLQLVTQ-LMPLGCLLDYVREHRD----------------------------NIGSQDLLNWCYQIAK  809 (1177)
T ss_pred             hhcc-----c-chHHHHHH-hcccchHHHHHHHhhc----------------------------cccHHHHHHHHHHHHH
Confidence            9997     2 23889999 9999999999998641                            1224578889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCCCCCCCccc----------ccCCCCCCchhhHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNSSPDS----------NMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~~~Y~APE~----------l~~~~~ys~ksDIWSLGv  312 (667)
                      ||.|||.++++||||-..|||+.+ -.++||.|||+|+....+...|.||+.          ....+.|+.++||||+||
T Consensus       810 gM~YLe~qrlVHrdLaaRNVLVks-P~hvkitdfgla~ll~~d~~ey~~~~gK~pikwmale~i~~~~~thqSDVWsfGV  888 (1177)
T KOG1025|consen  810 GMKYLEEQRLVHRDLAARNVLVKS-PNHVKITDFGLAKLLAPDEKEYSAPGGKVPIKWMALESIRIRKYTHQSDVWSFGV  888 (1177)
T ss_pred             HHHHHHhcchhhhhhhhhheeecC-CCeEEEEecchhhccCcccccccccccccCcHHHHHHHhhccCCCchhhhhhhhh
Confidence            999999999999999999999998 889999999999988877755544331          234567999999999999


Q ss_pred             HHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH
Q 005958          313 MMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC  391 (667)
Q Consensus       313 iLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa  391 (667)
                      ++||++| |..|+            .|.+.+++.+.++..         ..++.++.++-++.-++.+||..|+..||++
T Consensus       889 tiWElmTFGa~Py------------~gi~~~eI~dlle~g---------eRLsqPpiCtiDVy~~mvkCwmid~~~rp~f  947 (1177)
T KOG1025|consen  889 TIWELMTFGAKPY------------DGIPAEEIPDLLEKG---------ERLSQPPICTIDVYMVMVKCWMIDADSRPTF  947 (1177)
T ss_pred             hHHHHHhcCCCcc------------CCCCHHHhhHHHhcc---------ccCCCCCCccHHHHHHHHHHhccCcccCccH
Confidence            9999998 77776            466666666665432         2355677889999999999999999999999


Q ss_pred             HHHHc
Q 005958          392 LDALR  396 (667)
Q Consensus       392 ~elL~  396 (667)
                      +++..
T Consensus       948 kel~~  952 (1177)
T KOG1025|consen  948 KELAE  952 (1177)
T ss_pred             HHHHH
Confidence            88753

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.96  E-value=1.9e-27  Score=231.62  Aligned_cols=203  Identities=25%  Similarity=0.349  Sum_probs=175.0

Q ss_pred             eccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh---HHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEeccc
Q 005958           94 VSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA---QRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTT  170 (667)
Q Consensus        94 LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~---~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~~  170 (667)
                      ||+|.+|    .||++.+..     +++.+++|++.....   ...+.+|+++++.++      |++|+++++++.    
T Consensus         1 l~~g~~~----~v~~~~~~~-----~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~------~~~i~~~~~~~~----   61 (215)
T cd00180           1 LGEGGFG----TVYLARDKK-----TGKKVAIKIIKKEDSSSLLEELLREIEILKKLN------HPNIVKLYGVFE----   61 (215)
T ss_pred             CCcCCce----EEEEEEecC-----CCcEEEEEEeccccchhHHHHHHHHHHHHHhcC------CCCeeeEeeeee----
Confidence            6899999    999999987     689999999987544   367899999999995      999999999998    


Q ss_pred             CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHC
Q 005958          171 SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSH  250 (667)
Q Consensus       171 ~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs~  250 (667)
                       .....+++|| ++++++|.+++....        ..++                    ...+..++.+++.+|+|||++
T Consensus        62 -~~~~~~~~~e-~~~~~~l~~~~~~~~--------~~~~--------------------~~~~~~~~~~l~~~l~~lh~~  111 (215)
T cd00180          62 -DENHLYLVME-YCEGGSLKDLLKENE--------GKLS--------------------EDEILRILLQILEGLEYLHSN  111 (215)
T ss_pred             -cCCeEEEEEe-cCCCCcHHHHHHhcc--------CCCC--------------------HHHHHHHHHHHHHHHHHHHhC
Confidence             6689999999 999889999998642        1233                    356788999999999999999


Q ss_pred             CCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHHHHHHHhCC
Q 005958          251 GLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRE  321 (667)
Q Consensus       251 gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG~  321 (667)
                      |++|+||+|.||+++..++.++|+|||.+......         ...|++||.......++.+.|+|++|+++++|    
T Consensus       112 ~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l----  187 (215)
T cd00180         112 GIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL----  187 (215)
T ss_pred             CeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcchhhcccCCCCccChhHhcccCCCCchhhhHHHHHHHHHH----
Confidence            99999999999999964588999999999866543         26799999654443788999999999999999    


Q ss_pred             CCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCC
Q 005958          322 LMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHP  398 (667)
Q Consensus       322 ~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HP  398 (667)
                                                                       +.+.+++.+||..||++||++.++++|+
T Consensus       188 -------------------------------------------------~~~~~~l~~~l~~~p~~R~~~~~l~~~~  215 (215)
T cd00180         188 -------------------------------------------------PELKDLIRKMLQKDPEKRPSAKEILEHL  215 (215)
T ss_pred             -------------------------------------------------HHHHHHHHHHhhCCcccCcCHHHHhhCC
Confidence                                                             2567999999999999999999999885

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.95  E-value=1.3e-28  Score=293.10  Aligned_cols=194  Identities=20%  Similarity=0.206  Sum_probs=139.8

Q ss_pred             CcceEEEEEEEeccc--CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHH
Q 005958          156 SYSMQVHGYVSSHTT--SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLI  233 (667)
Q Consensus       156 pnIv~l~~~~~~~~~--~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i  233 (667)
                      +||+.++++|.....  .....++++|| ++++ +|+++|....        ..+++                    ..+
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~~~-~L~~~l~~~~--------~~~~~--------------------~~~   82 (793)
T PLN00181         33 DYVRSLLGSHKEGNLDGLDDDSIVRALE-CEDV-SLRQWLDNPD--------RSVDA--------------------FEC   82 (793)
T ss_pred             HHHHHhhcccCCccccccccchhhhhhc-cCCc-cHHHHHhccc--------ccccH--------------------HHH
Confidence            577788887732211  13346888899 8876 9999997532        13443                    567


Q ss_pred             HHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcC------------------CCCeEEEeeecccccccC-----------
Q 005958          234 RLLMRDLLIGVNYLHSHGLAHTELRLENVHISP------------------VDRHIKVGILGNAADFYE-----------  284 (667)
Q Consensus       234 ~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~------------------~~~~vKL~DFGlA~~~~~-----------  284 (667)
                      +.|++||+.||+|||++||+||||||+||||+.                  .++.+||+|||+++....           
T Consensus        83 ~~i~~qi~~al~~lH~~gIvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~  162 (793)
T PLN00181         83 FHVFRQIVEIVNAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEE  162 (793)
T ss_pred             HHHHHHHHHHHHHHHhCCeeeccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhc
Confidence            889999999999999999999999999999953                  245677888887764211           


Q ss_pred             --------------CCCCCCCcccccCCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHH
Q 005958          285 --------------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQ  350 (667)
Q Consensus       285 --------------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~  350 (667)
                                    +.+.|||||++.+ ..|+.++|||||||+||||++|.+||........             .....
T Consensus       163 ~~~~~~~~~~~~~~gt~~Y~APE~~~~-~~~~~~sDVwSlGviL~ELl~~~~~~~~~~~~~~-------------~~~~~  228 (793)
T PLN00181        163 VKKQPFPMKQILAMEMSWYTSPEEDNG-SSSNCASDVYRLGVLLFELFCPVSSREEKSRTMS-------------SLRHR  228 (793)
T ss_pred             cccCCCcccccccCCCcceEChhhhcc-CCCCchhhhhhHHHHHHHHhhCCCchhhHHHHHH-------------HHHHh
Confidence                          1245999996554 4589999999999999999999988753221111             11000


Q ss_pred             HhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCC
Q 005958          351 VLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGP  403 (667)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~  403 (667)
                      .++   +       ......++..+++.+||++||.+||++.|+|+||||...
T Consensus       229 ~~~---~-------~~~~~~~~~~~~~~~~L~~~P~~Rps~~eil~h~~~~~~  271 (793)
T PLN00181        229 VLP---P-------QILLNWPKEASFCLWLLHPEPSCRPSMSELLQSEFINEP  271 (793)
T ss_pred             hcC---h-------hhhhcCHHHHHHHHHhCCCChhhCcChHHHhhchhhhhh
Confidence            100   0       001124567899999999999999999999999999874

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.95  E-value=1.2e-28  Score=245.20  Aligned_cols=252  Identities=15%  Similarity=0.105  Sum_probs=190.7

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      .+.|.+.+.||+|.||    .+.+|+|+.     ++..+|+|.+.... ..+++.+|...--.|.     .|.||+.-|+
T Consensus        23 ~d~y~I~k~lgeG~Fg----kIlL~eHr~-----s~t~ivlKavp~p~tt~~dF~rEfhY~~~Ls-----~H~hIi~tY~   88 (378)
T KOG1345|consen   23 EDVYTINKQLGEGRFG----KILLAEHRQ-----SKTRIVLKAVPRPQTTQADFVREFHYSFFLS-----PHQHIIDTYE   88 (378)
T ss_pred             hhhhhHHHHhccccee----eEEeeeccC-----CceEEEeeccCcchhhHHHHHHHhccceeec-----cchhhhHHHH
Confidence            3789999999999999    999999998     89999999998643 4567889988877787     6999998886


Q ss_pred             E-EEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          164 Y-VSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       164 ~-~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      + |+     ..+.++++|| |++.|||.+-+...+          +.|                    ...+.++.|+++
T Consensus        89 vaFq-----t~d~YvF~qE-~aP~gdL~snv~~~G----------igE--------------------~~~K~v~~ql~S  132 (378)
T KOG1345|consen   89 VAFQ-----TSDAYVFVQE-FAPRGDLRSNVEAAG----------IGE--------------------ANTKKVFAQLLS  132 (378)
T ss_pred             HHhh-----cCceEEEeec-cCccchhhhhcCccc----------ccH--------------------HHHHHHHHHHHH
Confidence            5 45     6779999999 999999998776543          333                    345779999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcC-CCCeEEEeeecccccccCCC------CCCCCcccccC----CCCCCchhhHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISP-VDRHIKVGILGNAADFYEDG------PNNSSPDSNMD----RRQMMIAFDMRCVG  311 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~-~~~~vKL~DFGlA~~~~~~~------~~Y~APE~l~~----~~~ys~ksDIWSLG  311 (667)
                      ||.|+|++++||||||.+||||-. +...+||||||..+..+..-      -.|.|||+...    .-...+..|||.||
T Consensus       133 Ai~fMHsknlVHRdlK~eNiLif~~df~rvKlcDFG~t~k~g~tV~~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfG  212 (378)
T KOG1345|consen  133 AIEFMHSKNLVHRDLKAENILIFDADFYRVKLCDFGLTRKVGTTVKYLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFG  212 (378)
T ss_pred             HHHHhhccchhhcccccceEEEecCCccEEEeeecccccccCceehhhhhhcccCCcHHHhhccccceEecccccchhee
Confidence            999999999999999999999854 34589999999987655432      56889986442    22346789999999


Q ss_pred             HHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCC---
Q 005958          312 FMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR---  388 (667)
Q Consensus       312 viLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kR---  388 (667)
                      +++|.+++|.+||+...-       ...+..++..+.......       -.......++.+..+.++-|..+|++|   
T Consensus       213 Ii~f~cltG~~PWQka~~-------~d~~Y~~~~~w~~rk~~~-------~P~~F~~fs~~a~r~Fkk~lt~~~~drcki  278 (378)
T KOG1345|consen  213 IIFFYCLTGKFPWQKASI-------MDKPYWEWEQWLKRKNPA-------LPKKFNPFSEKALRLFKKSLTPRFKDRCKI  278 (378)
T ss_pred             eeeeeeecCCCcchhhhc-------cCchHHHHHHHhcccCcc-------CchhhcccCHHHHHHHHHhcCCcccccchh
Confidence            999999999999862211       111222233332221111       112334578899999999999999999   


Q ss_pred             CCHHHHHcCCCC
Q 005958          389 ISCLDALRHPFL  400 (667)
Q Consensus       389 pSa~elL~HPwf  400 (667)
                      .+++......|.
T Consensus       279 ~~~kk~rk~~w~  290 (378)
T KOG1345|consen  279 WTAKKMRKCLWK  290 (378)
T ss_pred             HHHHHHHHHHHH
Confidence            555555544443

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.94  E-value=9.5e-26  Score=224.46  Aligned_cols=188  Identities=23%  Similarity=0.319  Sum_probs=162.2

Q ss_pred             eEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEEEEE
Q 005958           88 FKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGY  164 (667)
Q Consensus        88 y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~  164 (667)
                      |.+.+.||.|++|    .||+|.+..     +++.+|+|.+....   ..+.+.+|++.+++++      |+|+++++++
T Consensus         1 ~~~~~~i~~g~~~----~v~~~~~~~-----~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~------~~~i~~~~~~   65 (225)
T smart00221        1 YELGKKLGEGAFG----KVYLARDKG-----TGELVAVKVLKKEKTEKQREEFLREIRILKKLK------HPNIVKLYGV   65 (225)
T ss_pred             CceeeEeecCCCe----EEEEEEEcC-----CCcEEEEEeeccccchHHHHHHHHHHHHHHhCC------CCChhhheee
Confidence            6788999999999    999999987     78999999998643   3456788999999994      9999999999


Q ss_pred             EEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHH
Q 005958          165 VSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGV  244 (667)
Q Consensus       165 ~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL  244 (667)
                      +.     .....++++| ++++++|.+++.....        .+++                    ..+..++.|++.+|
T Consensus        66 ~~-----~~~~~~~v~e-~~~~~~L~~~~~~~~~--------~~~~--------------------~~~~~~~~~l~~~l  111 (225)
T smart00221       66 FE-----DPEPLYLVME-YCEGGDLFDYLRKKGG--------KLSE--------------------EEARFYLRQILEAL  111 (225)
T ss_pred             ee-----cCCceEEEEe-ccCCCCHHHHHHhccc--------CCCH--------------------HHHHHHHHHHHHHH
Confidence            98     6788999999 9999999999986431        0332                    46788999999999


Q ss_pred             HHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC----------CCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          245 NYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED----------GPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       245 ~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~----------~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      .|||++|++|+||+|.||+++. ++.++|+|||.+......          ...|++||.+.....++.++|+||||+++
T Consensus       112 ~~lh~~~i~h~di~~~ni~v~~-~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~  190 (225)
T smart00221      112 EYLHSLGIVHRDLKPENILLGM-DGLVKLADFGLARFIHRDLAALLKTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVIL  190 (225)
T ss_pred             HHHHhCCeecCCCCHHHEEEcC-CCCEEEeeCceeeEecCcccccccceeccCCcCCHhHhcCCCCCCchhhHHHHHHHH
Confidence            9999999999999999999998 799999999999866543          14699999653666788899999999999


Q ss_pred             HHHHhCCCCCh
Q 005958          315 AKMVLRELMDP  325 (667)
Q Consensus       315 yemltG~~PF~  325 (667)
                      |+|++|++||.
T Consensus       191 ~~l~~g~~pf~  201 (225)
T smart00221      191 YELLWGPEPFS  201 (225)
T ss_pred             HHHHHCCCCcc
Confidence            99999999995

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.94  E-value=1.7e-26  Score=239.44  Aligned_cols=255  Identities=15%  Similarity=0.152  Sum_probs=197.7

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhH---HHHHHHHHHHHHHhhccCCCCCcce
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQ---RRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~---~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      +...++++...+-+|+||    .||.|+++.....-+.+.|-+|.++....+   ..+..|--.+..+      .|||+.
T Consensus       281 v~r~Rv~l~~llqEGtFG----ri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~------sH~nll  350 (563)
T KOG1024|consen  281 VQRCRVRLSCLLQEGTFG----RIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGA------SHPNLL  350 (563)
T ss_pred             hhhhheechhhhhcCchh----heeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcC------cCCCcc
Confidence            334678888999999999    999998886444444566777776543222   2335666666666      499999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      .+.++..    ++....++++. +.+-|+|..++...+          .+         +..+.  ......++..++.|
T Consensus       351 ~V~~V~i----e~~~~P~V~y~-~~~~gNLK~FL~~Cr----------~~---------~~~~a--qtvtt~qlV~masQ  404 (563)
T KOG1024|consen  351 SVLGVSI----EDYATPFVLYP-ATGVGNLKSFLQICR----------GD---------DPSYA--QTVTTIQLVLMASQ  404 (563)
T ss_pred             ceeEEEe----eccCcceEEEe-ccCcchHHHHHHHhc----------cC---------CCccc--cchhHHHHHHHHHH
Confidence            9999987    25667888999 999999999998543          11         11111  12233577889999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-----------CCCCCcccccCCCCCCchhhHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-----------PNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-----------~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      ++.|++|||++||||.||...|.+|++ .-++||+|=.+++.+-+.+           ..||+||.+ ....|+.++|+|
T Consensus       405 la~am~hlh~~~ViHkDiAaRNCvIdd-~LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal-~n~~yssasDvW  482 (563)
T KOG1024|consen  405 LAMAMEHLHNHGVIHKDIAARNCVIDD-QLQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEAL-QNSHYSSASDVW  482 (563)
T ss_pred             HHHHHHHHHhcCcccchhhhhcceehh-heeEEeccchhccccCcccccccCCCCCCcccccCHHHH-hhhhhcchhhhH
Confidence            999999999999999999999999998 7899999999998765443           569999955 455699999999


Q ss_pred             HHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          309 CVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       309 SLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      ||||++|||++ |+.|+.            ..+|.++..+++....         +..+-++++++..++.-||+.+|++
T Consensus       483 sfGVllWELmtlg~~Pya------------eIDPfEm~~ylkdGyR---------laQP~NCPDeLf~vMacCWallpee  541 (563)
T KOG1024|consen  483 SFGVLLWELMTLGKLPYA------------EIDPFEMEHYLKDGYR---------LAQPFNCPDELFTVMACCWALLPEE  541 (563)
T ss_pred             HHHHHHHHHHhcCCCCcc------------ccCHHHHHHHHhccce---------ecCCCCCcHHHHHHHHHHHhcCccc
Confidence            99999999998 888874            3456667777654432         3445678999999999999999999


Q ss_pred             CCCHHHHHc
Q 005958          388 RISCLDALR  396 (667)
Q Consensus       388 RpSa~elL~  396 (667)
                      ||+.+|+..
T Consensus       542 RPsf~Qlv~  550 (563)
T KOG1024|consen  542 RPSFSQLVI  550 (563)
T ss_pred             CCCHHHHHH
Confidence            999999864

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.93  E-value=9.1e-26  Score=218.48  Aligned_cols=164  Identities=16%  Similarity=0.087  Sum_probs=119.8

Q ss_pred             CCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcC
Q 005958          187 FSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISP  266 (667)
Q Consensus       187 GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~  266 (667)
                      |+|.+++..++        ..++|                    ..++.|+.||+.||.|||+++      ||+|||++.
T Consensus         1 GsL~~~l~~~~--------~~l~~--------------------~~~~~i~~qi~~~L~~lH~~~------kp~Nil~~~   46 (176)
T smart00750        1 VSLADILEVRG--------RPLNE--------------------EEIWAVCLQCLRALRELHRQA------KSGNILLTW   46 (176)
T ss_pred             CcHHHHHHHhC--------CCCCH--------------------HHHHHHHHHHHHHHHHHHhcC------CcccEeEcC
Confidence            68999998643        14555                    457889999999999999999      999999998


Q ss_pred             CCCeEEEeeecccccccC----CCCCCCCcccccCCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChh
Q 005958          267 VDRHIKVGILGNAADFYE----DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPS  342 (667)
Q Consensus       267 ~~~~vKL~DFGlA~~~~~----~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~  342 (667)
                       ++.+|+  ||++.....    +.+.|+|||++. ...|+.++|||||||++|||++|++||......          ..
T Consensus        47 -~~~~~~--fG~~~~~~~~~~~g~~~y~aPE~~~-~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~----------~~  112 (176)
T smart00750       47 -DGLLKL--DGSVAFKTPEQSRVDPYFMAPEVIQ-GQSYTEKADIYSLGITLYEALDYELPYNEEREL----------SA  112 (176)
T ss_pred             -ccceee--ccceEeeccccCCCcccccChHHhc-CCCCcchhhHHHHHHHHHHHHhCCCCccccchh----------cH
Confidence             889999  999876533    348899999654 456899999999999999999999998532111          01


Q ss_pred             HHHHHHHHHhccCCCCCCCCcccccCCCH--HHHHHHHHhhhcCcCCCCCHHHHHcCCCCCC
Q 005958          343 CLREFLLQVLNRNSSSGNTGFQILDRNWG--AGWNLLSLLLATKPSKRISCLDALRHPFLCG  402 (667)
Q Consensus       343 ~l~~~~~~~~~~~~~~~~~~~~~~~~~s~--e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~  402 (667)
                      .+....... ....+   .........++  ++++||.+||..||++||++.|+++|+|+..
T Consensus       113 ~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~~~  170 (176)
T smart00750      113 ILEILLNGM-PADDP---RDRSNLESVSAARSFADFMRVCASRLPQRREAANHYLAHCRALF  170 (176)
T ss_pred             HHHHHHHHh-ccCCc---cccccHHHHHhhhhHHHHHHHHHhcccccccCHHHHHHHHHHHH
Confidence            111111111 11100   00111122233  6999999999999999999999999998753

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=1.8e-25  Score=255.40  Aligned_cols=253  Identities=19%  Similarity=0.169  Sum_probs=180.7

Q ss_pred             CCe-EEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEc----chhhHH----HHHHHHHHHHHHhhccCCCCC
Q 005958           86 GDF-KILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLI----SVQAQR----RGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        86 ~~y-~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~----~~~~~~----~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      +.| .....+|.|++|    .|+.+....     ..+.++.|...    ......    .+..|+.+-..+      .||
T Consensus       317 ~~y~~~~~~~g~ga~g----~~~~~~~~~-----~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l------~h~  381 (601)
T KOG0590|consen  317 EKYGKPGRVLGSGAYG----SVRIAKRRS-----DLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSL------SHP  381 (601)
T ss_pred             cccCCccceeeecccC----ceEEEEecC-----CCccchhhhhhcccCCcccHHHHhhhhhhheeecccc------cCC
Confidence            445 467889999999    899988877     34445555432    211111    134455555555      599


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+.....+.     +.....-+|| ||++ ||+.++...+         .+.-                    ..+..+
T Consensus       382 ~~~e~l~~~~-----~~~~~~~~mE-~~~~-Dlf~~~~~~~---------~~~~--------------------~e~~c~  425 (601)
T KOG0590|consen  382 NIIETLDIVQ-----EIDGILQSME-YCPY-DLFSLVMSNG---------KLTP--------------------LEADCF  425 (601)
T ss_pred             chhhhHHHHh-----hcccchhhhh-cccH-HHHHHHhccc---------ccch--------------------hhhhHH
Confidence            9988777766     4444444599 9999 9999998753         2332                    346779


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-------------CCCCCcccccCCCCCCc
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-------------PNNSSPDSNMDRRQMMI  303 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-------------~~Y~APE~l~~~~~ys~  303 (667)
                      +.||+.||+|||+.||.||||||+|+++.. +|.+||+|||.+..+..+.             ..|+|||++.+...-..
T Consensus       426 fKqL~~Gv~y~h~~GiahrdlK~enll~~~-~g~lki~Dfg~~~vf~~~~e~~~~~~~g~~gS~pY~apE~~~~~~ydpr  504 (601)
T KOG0590|consen  426 FKQLLRGVKYLHSMGLAHRDLKLENLLVTE-NGILKIIDFGAASVFRYPWEKNIHESSGIVGSDPYLAPEVLTGKEYDPR  504 (601)
T ss_pred             HHHHHHHHHHHHhcCceeccCccccEEEec-CCceEEeecCcceeeccCcchhhhhhcCcccCCcCcCcccccccccCcc
Confidence            999999999999999999999999999999 8999999999997654332             57999996665554466


Q ss_pred             hhhHHHHHHHHHHHHhCCCCChhhhhhhhhh-hccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhh
Q 005958          304 AFDMRCVGFMMAKMVLRELMDPLIFTKFKSF-LTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLA  382 (667)
Q Consensus       304 ksDIWSLGviLyemltG~~PF~~~~~~~~~~-~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~  382 (667)
                      .+||||.|++++.|++|+.||.-..+-...+ ...+..              ..........++..+..+.+.+|.+||+
T Consensus       505 ~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~lp~~~~~~~~~~l~  570 (601)
T KOG0590|consen  505 AVDVWSCGIIYICMILGRFPWKVAKKSDNSFKTNNYSD--------------QRNIFEGPNRLLSLLPRETRIIIYRMLQ  570 (601)
T ss_pred             hhhhhhccceEEEEecCCCccccccccccchhhhcccc--------------ccccccChHHHHHhchhhHHHHHHHHcc
Confidence            8999999999999999999986221111100 000000              0000111112333455688999999999


Q ss_pred             cCcCCCCCHHHHHcCCCCCCCC
Q 005958          383 TKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       383 ~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      +||.+|.|+++|++.+||+.+.
T Consensus       571 ~~P~~R~ti~~i~~d~W~~~i~  592 (601)
T KOG0590|consen  571 LDPTKRITIEQILNDEWIRSIE  592 (601)
T ss_pred             CChhheecHHHHhhChHhhhcc
Confidence            9999999999999999999876

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.90  E-value=4.7e-22  Score=204.27  Aligned_cols=256  Identities=21%  Similarity=0.242  Sum_probs=190.0

Q ss_pred             eEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCC-cceEE
Q 005958           88 FKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHS-YSMQV  161 (667)
Q Consensus        88 y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~Hp-nIv~l  161 (667)
                      |.+.+.||.|+||    .||++.+.        ..+|+|.+....     ....+.+|+.++..+.      |+ +|+++
T Consensus         2 ~~~~~~l~~g~~~----~v~~~~~~--------~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~------~~~~i~~~   63 (384)
T COG0515           2 YRILRKLGEGSFG----EVYLARDR--------KLVALKVLAKKLESKSKEVERFLREIQILASLN------HPPNIVKL   63 (384)
T ss_pred             ceeEEeecCCCCe----EEEEEEec--------cEEEEEeechhhccchhHHHHHHHHHHHHHHcc------CCcceeeE
Confidence            7889999999999    99999987        568999987632     2456789999999996      66 89999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++.+.     .....+++++ ++.+++|.+++......      ..+.                    ...+..++.|++
T Consensus        64 ~~~~~-----~~~~~~~~~~-~~~~~~l~~~~~~~~~~------~~~~--------------------~~~~~~~~~~~~  111 (384)
T COG0515          64 YDFFQ-----DEGSLYLVME-YVDGGSLEDLLKKIGRK------GPLS--------------------ESEALFILAQIL  111 (384)
T ss_pred             EEEEe-----cCCEEEEEEe-cCCCCcHHHHHHhcccc------cCCC--------------------HHHHHHHHHHHH
Confidence            99997     6666999999 99999999777754210      0223                    356788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCC-eEEEeeecccccccCC---------------CCCCCCcccccCC--CCCCc
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDR-HIKVGILGNAADFYED---------------GPNNSSPDSNMDR--RQMMI  303 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~-~vKL~DFGlA~~~~~~---------------~~~Y~APE~l~~~--~~ys~  303 (667)
                      .++.|+|+.|++|||+||+||+++. .+ .++++|||.+..+...               ...|+|||.+.+.  ..+..
T Consensus       112 ~~l~~~H~~~~~hrd~kp~nil~~~-~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~  190 (384)
T COG0515         112 SALEYLHSKGIIHRDIKPENILLDR-DGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASS  190 (384)
T ss_pred             HHHHHHHhCCeeccCCCHHHeeecC-CCCeEEEeccCcceecCCCCccccccccccccccccccCCHHHhcCCCCCCCCc
Confidence            9999999999999999999999998 55 7999999998744321               2679999976664  57899


Q ss_pred             hhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhcc-CCCCCCCCcccccCCCHHHHHHHHHhhh
Q 005958          304 AFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNR-NSSSGNTGFQILDRNWGAGWNLLSLLLA  382 (667)
Q Consensus       304 ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~s~e~~dLI~~~L~  382 (667)
                      ..|+||+|++++++++|..||......        .......+.+...... ..........  ......+.+++.+++.
T Consensus       191 ~~D~~s~g~~~~~~~~~~~p~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  260 (384)
T COG0515         191 SSDIWSLGITLYELLTGLPPFEGEKNS--------SATSQTLKIILELPTPSLASPLSPSNP--ELISKAASDLLKKLLA  260 (384)
T ss_pred             hHhHHHHHHHHHHHHhCCCCCCCCCcc--------ccHHHHHHHHHhcCCcccccccCcccc--chhhHHHHHHHHHHHh
Confidence            999999999999999999987522110        0011222222111110 0000000000  1123578999999999


Q ss_pred             cCcCCCCCHHHHHcCCCCCCCC
Q 005958          383 TKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       383 ~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      .+|..|.+..+...++|.....
T Consensus       261 ~~~~~r~~~~~~~~~~~~~~~~  282 (384)
T COG0515         261 KDPKNRLSSSSDLSHDLLAHLK  282 (384)
T ss_pred             cCchhcCCHHHHhhchHhhCcc
Confidence            9999999999999997766544

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.89  E-value=7.3e-23  Score=220.69  Aligned_cols=158  Identities=20%  Similarity=0.185  Sum_probs=123.6

Q ss_pred             CcccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-------hhHHHHHHHHHHHHHHhhc
Q 005958           78 GHVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-------QAQRRGRRAIEVLKKLVRR  150 (667)
Q Consensus        78 ~~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-------~~~~~~~rEi~iL~~L~~~  150 (667)
                      +.+.+...++|++.+.||+|+||    +||+|++...    +++.||||++...       .....+.+|+++|++++  
T Consensus        10 ~~~~~~~~~~Y~~~~~IG~G~fg----~Vy~a~~~~~----~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~--   79 (365)
T PRK09188         10 GDQIPALSARFVETAVLKRDVFS----TVERGYFAGD----PGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVR--   79 (365)
T ss_pred             ccccccccCCceEccEEeecCcE----EEEEEEEcCC----CCeEEEEEEecccccccccHHHHHHHHHHHHHHHhcc--
Confidence            34555677999999999999999    9999998752    4677899986532       12345789999999995  


Q ss_pred             cCCCCCcceE-EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCcccc
Q 005958          151 RLMYHSYSMQ-VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQ  229 (667)
Q Consensus       151 ~~~~HpnIv~-l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~  229 (667)
                          |+||+. ++++         +..||||| |++|++|.. +...            .                    
T Consensus        80 ----h~~iv~~l~~~---------~~~~LVmE-~~~G~~L~~-~~~~------------~--------------------  112 (365)
T PRK09188         80 ----GIGVVPQLLAT---------GKDGLVRG-WTEGVPLHL-ARPH------------G--------------------  112 (365)
T ss_pred             ----CCCCCcEEEEc---------CCcEEEEE-ccCCCCHHH-hCcc------------c--------------------
Confidence                999985 4431         34799999 999989963 2110            0                    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCcccCC-CCCcEEEcCCCCeEEEeeecccccccCCC-----------------CCCCC
Q 005958          230 LRLIRLLMRDLLIGVNYLHSHGLAHTEL-RLENVHISPVDRHIKVGILGNAADFYEDG-----------------PNNSS  291 (667)
Q Consensus       230 ~~~i~~i~~QIl~aL~yLHs~gIvHrDL-KPeNILl~~~~~~vKL~DFGlA~~~~~~~-----------------~~Y~A  291 (667)
                         ...++.|++.||.|||++||+|||| ||+|||++. ++.+||+|||+|+.+....                 ..|+|
T Consensus       113 ---~~~~~~~i~~aL~~lH~~gIiHrDL~KP~NILv~~-~~~ikLiDFGlA~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  188 (365)
T PRK09188        113 ---DPAWFRSAHRALRDLHRAGITHNDLAKPQNWLMGP-DGEAAVIDFQLASVFRRRGALYRIAAYEDLRHLLKHKRTYA  188 (365)
T ss_pred             ---hHHHHHHHHHHHHHHHHCCCeeCCCCCcceEEEcC-CCCEEEEECccceecccCcchhhhhhhhhhhhhhccCccCC
Confidence               1347899999999999999999999 999999987 7899999999998654432                 45889


Q ss_pred             ccccc
Q 005958          292 PDSNM  296 (667)
Q Consensus       292 PE~l~  296 (667)
                      ||.+.
T Consensus       189 pe~~~  193 (365)
T PRK09188        189 PDALT  193 (365)
T ss_pred             cccCC
Confidence            99543

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.88  E-value=7e-24  Score=233.04  Aligned_cols=238  Identities=16%  Similarity=0.217  Sum_probs=193.1

Q ss_pred             EeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEec
Q 005958           93 RVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSH  168 (667)
Q Consensus        93 ~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~  168 (667)
                      .+|+|+||    .|++++....  ...+.-||+|++++..    .......|-.++..++     +||.+|+++..++  
T Consensus         1 vlg~g~~g----kvfLvrk~~g--~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~-----~~~f~v~lhyafq--   67 (612)
T KOG0603|consen    1 VLGQGSYG----KVFLVRKAGG--ADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVH-----NTPFLVKLHYAFQ--   67 (612)
T ss_pred             CCCcCCCc----chHHHHHhcc--ccccchhhhhcccccccccccccccccHHHHHhhcc-----CCCceeeeeeeec--
Confidence            37999999    8888765432  2268889999987622    1123466888888886     6999999999999  


Q ss_pred             ccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 005958          169 TTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLH  248 (667)
Q Consensus       169 ~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLH  248 (667)
                         ....++++++ +..+|+|...+.+..         .++|                    ..++.+...++.|++++|
T Consensus        68 ---t~~kl~l~ld-~~rgg~lft~l~~~~---------~f~~--------------------~~~~~~~aelaLald~lh  114 (612)
T KOG0603|consen   68 ---TDGKLYLILD-FLRGGDLFTRLSKEV---------MFDE--------------------LDVAFYLAELALALDHLH  114 (612)
T ss_pred             ---cccchhHhhh-hcccchhhhccccCC---------chHH--------------------HHHHHHHHHHHHHHhhcc
Confidence               8889999999 999999999887654         4444                    357889999999999999


Q ss_pred             HCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----CCCCCCcccccCCCCCCchhhHHHHHHHHHHHHhCCCC
Q 005958          249 SHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELM  323 (667)
Q Consensus       249 s~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG~~P  323 (667)
                      +.||+|||+|++||+++. +|++++.|||+++..-..     ...|||||++.   .....+|+||+|+++|||++|..|
T Consensus       115 ~l~iiyrd~k~enilld~-~Ghi~~tdfglske~v~~~~~cgt~eymApEI~~---gh~~a~D~ws~gvl~felltg~~p  190 (612)
T KOG0603|consen  115 KLGIAYRDYKLENVLLLL-EGHIKLTDFGLSKEAVKEKIACGTYEYRAPEIIN---GHLSAADWWSFGVLAFELLTGTLP  190 (612)
T ss_pred             hhHHHHhcccccceeecc-cCccccCCchhhhHhHhhhhcccchhhhhhHhhh---ccCCcccchhhhhhHHHHhhCCCC
Confidence            999999999999999999 999999999999865433     46799999654   478899999999999999999999


Q ss_pred             ChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH-----HHHHcCC
Q 005958          324 DPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC-----LDALRHP  398 (667)
Q Consensus       324 F~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa-----~elL~HP  398 (667)
                      |..                   +....++..       .+.++...+.++++++..++..+|.+|.-+     .++++|+
T Consensus       191 f~~-------------------~~~~~Il~~-------~~~~p~~l~~~a~~~~~~l~~r~p~nrLg~~~~~~~eik~h~  244 (612)
T KOG0603|consen  191 FGG-------------------DTMKRILKA-------ELEMPRELSAEARSLFRQLFKRNPENRLGAGPDGVDEIKQHE  244 (612)
T ss_pred             Cch-------------------HHHHHHhhh-------ccCCchhhhHHHHHHHHHHHhhCHHHHhccCcchhHHHhccc
Confidence            852                   222222221       234456778899999999999999999864     7999999


Q ss_pred             CCCCCCCC
Q 005958          399 FLCGPRWR  406 (667)
Q Consensus       399 wf~~~~~~  406 (667)
                      ||+.+.|.
T Consensus       245 f~~~i~~~  252 (612)
T KOG0603|consen  245 FFQSIDWN  252 (612)
T ss_pred             hheeeeHh
Confidence            99999986

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.88  E-value=2e-22  Score=209.79  Aligned_cols=259  Identities=19%  Similarity=0.209  Sum_probs=176.3

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCC------------------------------CCCcEEEEEEE
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSP------------------------------LHNTKVVLRQL  128 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~------------------------------~tg~~vAvK~i  128 (667)
                      ....|.+++|++++.||+|...    .||.|+....+..                              ...-+.|||.+
T Consensus       150 ~dskFtiddyeiG~~igkGC~A----aVY~A~~~~dg~~le~~~~t~~~pgf~p~ts~p~e~~q~~~p~~~aFPLAiKmM  225 (598)
T KOG4158|consen  150 IDSKFTIDDYEIGEFIGKGCNA----AVYSARLANDGSDLESSGNTHYGPGFNPVTSIPAEIPQVSKPAQKAFPLAIKMM  225 (598)
T ss_pred             hhcccchhhhcccchhhccchh----hhhhhhcCCCcccccccCCCCcCCCcCCCcCCcccCCcccCccccccchHHHHh
Confidence            4456889999999999999999    9999987652211                              01124667766


Q ss_pred             cchhhHHHHHHHHHHHHHHhhc--------------------------cCCCCCcceEEEEEEEec--------------
Q 005958          129 ISVQAQRRGRRAIEVLKKLVRR--------------------------RLMYHSYSMQVHGYVSSH--------------  168 (667)
Q Consensus       129 ~~~~~~~~~~rEi~iL~~L~~~--------------------------~~~~HpnIv~l~~~~~~~--------------  168 (667)
                      -......   ....||+.+.+.                          ..-.|||||++.++|.+.              
T Consensus       226 fN~~~~s---~~~~iL~sM~~ElvPa~~~a~~~e~~~~t~R~l~nqtvhLa~HPNIvri~~aF~dsv~~lPda~~~YPda  302 (598)
T KOG4158|consen  226 FNFEHDS---GDAHILKSMGNELVPAPNAAKLLEGQMGTFRPLPNQTVHLAKHPNIVRIQTAFIDSVKVLPDAIERYPDA  302 (598)
T ss_pred             cccccCC---chHHHHHHhhhhccCcchhhhhcccccceeeeCCCCCcccCCCCCEEeehhhhhhhhccCCchhhhCccc
Confidence            4311110   011112111100                          024699999999988643              


Q ss_pred             --------ccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          169 --------TTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       169 --------~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                              +......+|+||. -+.. +|.+|+..+.          .+.                    ...+.++.|+
T Consensus       303 lp~R~~p~g~g~~~tlylvMk-rY~~-tLr~yl~~~~----------~s~--------------------r~~~~~laQl  350 (598)
T KOG4158|consen  303 LPARWYPSGAGEPKTLYLVMK-RYRQ-TLREYLWTRH----------RSY--------------------RTGRVILAQL  350 (598)
T ss_pred             ccceecccccCCCceEEEehh-cchh-hHHHHHhcCC----------Cch--------------------HHHHHHHHHH
Confidence                    2235568999999 8888 9999998653          221                    3456799999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCC---CeEEEeeecccccccCC---------------CCCCCCcccccCCCCC-
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVD---RHIKVGILGNAADFYED---------------GPNNSSPDSNMDRRQM-  301 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~---~~vKL~DFGlA~~~~~~---------------~~~Y~APE~l~~~~~y-  301 (667)
                      ++|+.|||.+||.|||+|.+|||+.-++   -.+.|+|||+|-.-...               ....||||+......- 
T Consensus       351 LEav~hL~~hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi~ta~PGp~  430 (598)
T KOG4158|consen  351 LEAVTHLHKHGVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEIATAVPGPN  430 (598)
T ss_pred             HHHHHHHHHccchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecchhhhhcCCCCc
Confidence            9999999999999999999999986422   26899999988533221               1567899954322211 


Q ss_pred             ----CchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHH
Q 005958          302 ----MIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLL  377 (667)
Q Consensus       302 ----s~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI  377 (667)
                          -.++|.|+.|.+.||++....||..          .|.-.-+.+.|-+..+          ..+++.+.+.+++|+
T Consensus       431 avvny~kAD~WA~GalaYEIfg~~NPFY~----------rGem~L~~r~Yqe~qL----------Palp~~vpp~~rqlV  490 (598)
T KOG4158|consen  431 AVVNYEKADTWAAGALAYEIFGRSNPFYK----------RGEMLLDTRTYQESQL----------PALPSRVPPVARQLV  490 (598)
T ss_pred             eeeccchhhhhhhhhhHHHHhccCCcccc----------cchheechhhhhhhhC----------CCCcccCChHHHHHH
Confidence                2489999999999999999999853          1221222222222222          124457889999999


Q ss_pred             HHhhhcCcCCCCCH---HHHHc
Q 005958          378 SLLLATKPSKRISC---LDALR  396 (667)
Q Consensus       378 ~~~L~~DP~kRpSa---~elL~  396 (667)
                      ..+|+.||++|+++   +.+|+
T Consensus       491 ~~lL~r~pskRvsp~iAANvl~  512 (598)
T KOG4158|consen  491 FDLLKRDPSKRVSPNIAANVLN  512 (598)
T ss_pred             HHHhcCCccccCCccHHHhHHH
Confidence            99999999999985   44554

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.87  E-value=3.3e-23  Score=237.09  Aligned_cols=235  Identities=18%  Similarity=0.196  Sum_probs=175.3

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh------HHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA------QRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~------~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      +|...+.||.+.|=    +|.+|++..      |. |+||++-+...      -.+...|++ ....      .|||++.
T Consensus        24 e~~~~~~LGstRFl----Kv~r~k~~e------G~-vVvKVFvk~~p~~sL~~~~qrL~~ik-~~l~------~~pn~lP   85 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFL----KVARAKDRE------GL-VVVKVFVKQDPTISLRPFKQRLEEIK-FALM------KAPNCLP   85 (1431)
T ss_pred             ceeeecccCchhhh----hhhhccCCC------ce-EEEEEEeccCCCCCchHHHHHHHHHH-HHhh------cCCcccc
Confidence            78889999999999    999999885      55 89999865321      122344555 3333      6999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +.-+..     .....|||-+ |... +|+|.|..+.++..                             -.-+.|+.||
T Consensus        86 fqk~~~-----t~kAAylvRq-yvkh-nLyDRlSTRPFL~~-----------------------------iEKkWiaFQL  129 (1431)
T KOG1240|consen   86 FQKVLV-----TDKAAYLVRQ-YVKH-NLYDRLSTRPFLVL-----------------------------IEKKWIAFQL  129 (1431)
T ss_pred             hHHHHH-----hhHHHHHHHH-HHhh-hhhhhhccchHHHH-----------------------------HHHHHHHHHH
Confidence            988876     6788899999 9988 99999987653322                             2347799999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeeccccccc--CCC--------------CCCCCcccccCCC-----
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFY--EDG--------------PNNSSPDSNMDRR-----  299 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~--~~~--------------~~Y~APE~l~~~~-----  299 (667)
                      +.||..+|..||+|+|||.|||||++ -+-+.|+||..-+...  .+.              .+|.|||.+....     
T Consensus       130 L~al~qcH~~gVcHGDIKsENILiTS-WNW~~LtDFAsFKPtYLPeDNPadf~fFFDTSrRRtCYiAPERFv~~~~~~~~  208 (1431)
T KOG1240|consen  130 LKALSQCHKLGVCHGDIKSENILITS-WNWLYLTDFASFKPTYLPEDNPADFTFFFDTSRRRTCYIAPERFVSALGKTSV  208 (1431)
T ss_pred             HHHHHHHHHcCccccccccceEEEee-echhhhhcccccCCccCCCCCcccceEEEecCCceeeecChHhhhcccccccc
Confidence            99999999999999999999999999 7889999998765322  111              5799999765322     


Q ss_pred             ----C-CCchhhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHH
Q 005958          300 ----Q-MMIAFDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAG  373 (667)
Q Consensus       300 ----~-ys~ksDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~  373 (667)
                          . .+++.||||+||+++||++ |+|||.- .|++..-.....+++.+.+.+                    .+...
T Consensus       209 ~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~L-SQL~aYr~~~~~~~e~~Le~I--------------------ed~~~  267 (1431)
T KOG1240|consen  209 GQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTL-SQLLAYRSGNADDPEQLLEKI--------------------EDVSL  267 (1431)
T ss_pred             CCcccccChhhhhhhhhHHHHHHHhcCCCcccH-HHHHhHhccCccCHHHHHHhC--------------------cCccH
Confidence                2 5679999999999999998 7999852 222221111112222222221                    12378


Q ss_pred             HHHHHHhhhcCcCCCCCHHHHHcC
Q 005958          374 WNLLSLLLATKPSKRISCLDALRH  397 (667)
Q Consensus       374 ~dLI~~~L~~DP~kRpSa~elL~H  397 (667)
                      ++||..|++.||++|.+|++.|+-
T Consensus       268 Rnlil~Mi~rdPs~RlSAedyL~~  291 (1431)
T KOG1240|consen  268 RNLILSMIQRDPSKRLSAEDYLQK  291 (1431)
T ss_pred             HHHHHHHHccCchhccCHHHHHHh
Confidence            999999999999999999999874

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.85  E-value=1.4e-21  Score=224.07  Aligned_cols=216  Identities=19%  Similarity=0.257  Sum_probs=162.1

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGY  164 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~  164 (667)
                      -.+|+.++.|..|+||    .||.++|+.     +.+++|+|+ ++..   -+.|-  |+...      +.|.+|     
T Consensus        82 e~df~~IklisngAyg----avylvrh~~-----trqrfa~ki-Nkq~---lilRn--ilt~a------~npfvv-----  135 (1205)
T KOG0606|consen   82 ESDFNTIKLISNGAYG----AVYLVRHKE-----TRQRFAMKI-NKQN---LILRN--ILTFA------GNPFVV-----  135 (1205)
T ss_pred             ccccceeEeeccCCCC----ceeeeeccc-----cccchhhcc-cccc---hhhhc--ccccc------CCccee-----
Confidence            4789999999999999    999999998     889999954 3321   11111  22222      233333     


Q ss_pred             EEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHH
Q 005958          165 VSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGV  244 (667)
Q Consensus       165 ~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL  244 (667)
                                            ||-...++.-+         .+.                            .+++.++
T Consensus       136 ----------------------gDc~tllk~~g---------~lP----------------------------vdmvla~  156 (1205)
T KOG0606|consen  136 ----------------------GDCATLLKNIG---------PLP----------------------------VDMVLAV  156 (1205)
T ss_pred             ----------------------chhhhhcccCC---------CCc----------------------------chhhHHh
Confidence                                  13334444322         111                            1237899


Q ss_pred             HHHHHCCCcccCCCCCcEEEcCCCCeEEEeeeccccccc------------------------CCCCCCCCcccccCCCC
Q 005958          245 NYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFY------------------------EDGPNNSSPDSNMDRRQ  300 (667)
Q Consensus       245 ~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~------------------------~~~~~Y~APE~l~~~~~  300 (667)
                      +|||+.||+|||+||+|.+|+. -|++|++|||+++...                        .+.|.|.|||+++.+ .
T Consensus       157 Eylh~ygivhrdlkpdnllIT~-mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVilrq-g  234 (1205)
T KOG0606|consen  157 EYLHSYGIVHRDLKPDNLLITS-MGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEVILRQ-G  234 (1205)
T ss_pred             HhhccCCeecCCCCCCcceeee-cccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccChhhhhhh-c
Confidence            9999999999999999999999 9999999999986421                        112899999966544 5


Q ss_pred             CCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHh
Q 005958          301 MMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLL  380 (667)
Q Consensus       301 ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~  380 (667)
                      |+..+|+|++|+|+||.+.|+.||            .|..++++...+....-.++..       .....+|++++|.++
T Consensus       235 ygkpvdwwamGiIlyeFLVgcvpf------------fGdtpeelfg~visd~i~wpE~-------dea~p~Ea~dli~~L  295 (1205)
T KOG0606|consen  235 YGKPVDWWAMGIILYEFLVGCVPF------------FGDTPEELFGQVISDDIEWPEE-------DEALPPEAQDLIEQL  295 (1205)
T ss_pred             cCCCccHHHHHHHHHHHheeeeec------------cCCCHHHHHhhhhhhhcccccc-------CcCCCHHHHHHHHHH
Confidence            999999999999999999999997            5777777766655544444332       234568999999999


Q ss_pred             hhcCcCCCC---CHHHHHcCCCCCCCCCC
Q 005958          381 LATKPSKRI---SCLDALRHPFLCGPRWR  406 (667)
Q Consensus       381 L~~DP~kRp---Sa~elL~HPwf~~~~~~  406 (667)
                      |+.+|..|.   .+-++.+|+||+..+|.
T Consensus       296 L~qnp~~Rlgt~ga~evk~h~ff~~LDw~  324 (1205)
T KOG0606|consen  296 LRQNPLCRLGTGGALEVKQHGFFQLLDWK  324 (1205)
T ss_pred             HHhChHhhcccchhhhhhhccceeecccc
Confidence            999999996   56789999999999987

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.85  E-value=9.1e-20  Score=195.00  Aligned_cols=249  Identities=15%  Similarity=0.068  Sum_probs=174.5

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhH--HHHHHHHHHHHHHhhccCCCCCcceEEEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQ--RRGRRAIEVLKKLVRRRLMYHSYSMQVHGY  164 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~--~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~  164 (667)
                      +|++.+.||+|+||    .||+|.+...    ....+|+|........  ..+..|+.++..+..  ...-+++..+++.
T Consensus        19 ~~~i~~~iG~G~fG----~V~~v~~~~~----~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~--~~~~~~~~~~~~~   88 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFG----AVYLVSDKSE----KNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEK--KNGPSHFPKLLDH   88 (322)
T ss_pred             ceEEeeeccccCCc----eEEEEEecCC----CCeeEEEEEEEecccCCCccchhHHHHHHHHhh--hcCCCCCCEEEEe
Confidence            89999999999999    9999999872    1468999987753222  267889999999962  1113588899888


Q ss_pred             EEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHH
Q 005958          165 VSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGV  244 (667)
Q Consensus       165 ~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL  244 (667)
                      ..    ....+-||||+ .++. +|.++.....       ...|+.                    ..+..++.|++.+|
T Consensus        89 G~----~~~~~~~iVM~-l~G~-sL~dl~~~~~-------~~~fs~--------------------~T~l~ia~q~l~~l  135 (322)
T KOG1164|consen   89 GR----STEDFNFIVMS-LLGP-SLEDLRKRNP-------PGRFSR--------------------KTVLRIAIQNLNAL  135 (322)
T ss_pred             cc----CCCceeEEEEe-ccCc-cHHHHHHhCC-------CCCcCH--------------------hHHHHHHHHHHHHH
Confidence            83    16778999999 8888 9999886543       113443                    45677999999999


Q ss_pred             HHHHHCCCcccCCCCCcEEEcCCC----CeEEEeeeccccccc--C-----------------CCCCCCCcccccCCCCC
Q 005958          245 NYLHSHGLAHTELRLENVHISPVD----RHIKVGILGNAADFY--E-----------------DGPNNSSPDSNMDRRQM  301 (667)
Q Consensus       245 ~yLHs~gIvHrDLKPeNILl~~~~----~~vKL~DFGlA~~~~--~-----------------~~~~Y~APE~l~~~~~y  301 (667)
                      .+||+.|++||||||+|+++....    ..+.|.|||+|+.+.  .                 ++..|.++. .-.+...
T Consensus       136 ~~lH~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~-~H~~~e~  214 (322)
T KOG1164|consen  136 EDLHSKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASIN-VHLGIEQ  214 (322)
T ss_pred             HHHHhcCcccCCcCHHHeeecCCCCcccceEEEEecCCCccccccCCCCcccccCCCCccCCCCccccccHH-HhCCCcc
Confidence            999999999999999999998633    579999999998322  1                 113466666 3344457


Q ss_pred             CchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhh
Q 005958          302 MIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLL  381 (667)
Q Consensus       302 s~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L  381 (667)
                      +.+.|+||++.++.||+.|..||........        ...............         .......++.++...+-
T Consensus       215 ~r~DDles~~Y~l~el~~g~LPW~~~~~~~~--------~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~  277 (322)
T KOG1164|consen  215 GRRDDLESLFYMLLELLKGSLPWEALEMTDL--------KSKFEKDPRKLLTDR---------FGDLKPEEFAKILEYID  277 (322)
T ss_pred             CCchhhhhHHHHHHHHhcCCCCCccccccch--------HHHHHHHhhhhcccc---------ccCCChHHHHHHHHHhh
Confidence            8899999999999999999999853221100        011111111110000         11122346666666666


Q ss_pred             hcCcCCCCCHHHHHc
Q 005958          382 ATKPSKRISCLDALR  396 (667)
Q Consensus       382 ~~DP~kRpSa~elL~  396 (667)
                      ..+...+|....+..
T Consensus       278 ~~~~~~~Pdy~~~~~  292 (322)
T KOG1164|consen  278 SLDYEDKPDYEKLAE  292 (322)
T ss_pred             ccCCcCCCCHHHHHH
Confidence            678888887766654

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.84  E-value=1.4e-20  Score=185.29  Aligned_cols=196  Identities=15%  Similarity=0.189  Sum_probs=156.7

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      -+..+.|.++++||.|+||    .+|+|....     +|+.||||+-.......++..|..+.+.|+     +-..|..+
T Consensus        11 ~iv~gky~lvrkiGsGSFG----dIy~~~~i~-----~ge~VAiK~Es~~a~hpqL~yEskvY~iL~-----~g~GiP~i   76 (341)
T KOG1163|consen   11 LIVGGKYKLVRKIGSGSFG----DIYLGISIT-----SGEEVAIKLESSKAKHPQLLYESKVYRILQ-----GGVGIPHI   76 (341)
T ss_pred             heeccceEEEEeecCCchh----heeeeeecc-----CCceEEEEeecccCCCcchhHHHHHHHHhc-----cCCCCchh
Confidence            3556899999999999999    999999998     899999999776666667889999999998     56677777


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ..+..     +..+-.+||+ +.+. +|.++..-...        .|+                    ...+..++-|++
T Consensus        77 ~~y~~-----e~~ynvlVMd-LLGP-sLEdLfnfC~R--------~ft--------------------mkTvLMLaDQml  121 (341)
T KOG1163|consen   77 RHYGT-----EKDYNVLVMD-LLGP-SLEDLFNFCSR--------RFT--------------------MKTVLMLADQML  121 (341)
T ss_pred             hhhcc-----ccccceeeee-ccCc-cHHHHHHHHhh--------hhh--------------------HHhHHHHHHHHH
Confidence            77777     7888999999 8888 99998865421        233                    346788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcC--CCCeEEEeeecccccccCCC----------------CCCCCcccccCCCCCCc
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISP--VDRHIKVGILGNAADFYEDG----------------PNNSSPDSNMDRRQMMI  303 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~--~~~~vKL~DFGlA~~~~~~~----------------~~Y~APE~l~~~~~ys~  303 (667)
                      .-++|+|.++.|||||||+|+|+.-  ....+.|+|||+|+.+.+..                ..|.+--... +..-+.
T Consensus       122 ~RiEyvH~r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~~t~~HIpyre~r~ltGTaRYASinAh~-g~eqSR  200 (341)
T KOG1163|consen  122 SRIEYVHLRNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDIRTRQHIPYREDRNLTGTARYASINAHL-GIEQSR  200 (341)
T ss_pred             HHHHHHHhhccccccCCccceeeccccccceEEEEeccchhhhccccccccCccccCCccceeeeehhhhhhh-hhhhhh
Confidence            9999999999999999999999864  23579999999999876543                1232222111 112355


Q ss_pred             hhhHHHHHHHHHHHHhCCCCChhh
Q 005958          304 AFDMRCVGFMMAKMVLRELMDPLI  327 (667)
Q Consensus       304 ksDIWSLGviLyemltG~~PF~~~  327 (667)
                      .-|+=|+|.+|..+..|..||++.
T Consensus       201 RDDmeSvgYvLmYfnrG~LPWQgl  224 (341)
T KOG1163|consen  201 RDDMESVGYVLMYFNRGSLPWQGL  224 (341)
T ss_pred             hhhhhhhcceeeeeecCCCccccc
Confidence            789999999999999999999754

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.84  E-value=1.2e-20  Score=190.62  Aligned_cols=175  Identities=13%  Similarity=0.095  Sum_probs=133.3

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh--HH---------HHHHHHHHHHHHhhcc
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA--QR---------RGRRAIEVLKKLVRRR  151 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~--~~---------~~~rEi~iL~~L~~~~  151 (667)
                      +.-++|++++.||.|+||    .||++.. .      +..+|||++.....  ..         ...+|+..+.++.   
T Consensus        28 ~l~~~y~~~~~l~~~~f~----~v~l~~~-~------~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~---   93 (232)
T PRK10359         28 FLSYNIKTIKVFRNIDDT----KVSLIDT-D------YGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVR---   93 (232)
T ss_pred             HhhCceEEEEEecCCCce----EEEEEec-C------CCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHH---
Confidence            345899999999999999    9998644 2      55799999975221  11         1478999999995   


Q ss_pred             CCCCCcceEEEEEEEecccC---CCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccc
Q 005958          152 LMYHSYSMQVHGYVSSHTTS---GRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASR  228 (667)
Q Consensus       152 ~~~HpnIv~l~~~~~~~~~~---~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~  228 (667)
                         |++|..+.+++......   ..+..+|||| |++|.+|.++..             +++                  
T Consensus        94 ---~~GI~~~~d~~~~~~~~~~~~~~~~~lvmE-yi~G~tL~~~~~-------------~~~------------------  138 (232)
T PRK10359         94 ---SEGLASLNDFYLLAERKTLRYAHTYIMLIE-YIEGVELNDMPE-------------ISE------------------  138 (232)
T ss_pred             ---HCCCCcceEeeeecccccccccCCeEEEEE-EECCccHHHhhh-------------ccH------------------
Confidence               99999999987643110   1356899999 999989988732             121                  


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCCCCCCCcccccCCCCCCchhhHH
Q 005958          229 QLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       229 ~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                            ....+++.+|..||.+|++|||+||+||+++. ++ ++|+|||.........    |-+.+.....|+.++|||
T Consensus       139 ------~~~~~i~~~l~~lH~~gi~H~Dikp~Nili~~-~g-i~liDfg~~~~~~e~~----a~d~~vler~y~~~~di~  206 (232)
T PRK10359        139 ------DVKAKIKASIESLHQHGMVSGDPHKGNFIVSK-NG-LRIIDLSGKRCTAQRK----AKDRIDLERHYGIKNEIK  206 (232)
T ss_pred             ------HHHHHHHHHHHHHHHcCCccCCCChHHEEEeC-CC-EEEEECCCcccccchh----hHHHHHHHhHhccccccc
Confidence                  24669999999999999999999999999998 67 9999999887664332    222244445578899999


Q ss_pred             HHHHHHHHHH
Q 005958          309 CVGFMMAKMV  318 (667)
Q Consensus       309 SLGviLyeml  318 (667)
                      |||+++....
T Consensus       207 ~lg~~~~~~~  216 (232)
T PRK10359        207 DLGYYLLIYK  216 (232)
T ss_pred             ceeEeehHHH
Confidence            9999877554

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.83  E-value=1.6e-19  Score=184.92  Aligned_cols=194  Identities=15%  Similarity=0.171  Sum_probs=162.0

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      .--.|+++++||+|+||    +++.|.+.-     ++++||||.-......-++..|....+.|.     +.++|..+|-
T Consensus        26 VG~hyrVGkKIGeGsFG----~lf~G~Nl~-----nne~VAIKfEPrkS~APQLrdEYr~YKlL~-----g~~GIP~vYY   91 (449)
T KOG1165|consen   26 VGPHYRVGKKIGEGSFG----VLFLGKNLY-----NNEPVAIKFEPRKSEAPQLRDEYRTYKLLG-----GTEGIPQVYY   91 (449)
T ss_pred             ecccceeccccccCcce----eeecccccc-----cCceEEEEeccccCCcchHHHHHHHHHHHc-----CCCCCCceee
Confidence            34679999999999999    999999997     899999999766556667888999999997     7899999987


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      +..     .+-+-.|||| +++. +|.|+..-++.        +|+                    ...+..++.|++.-
T Consensus        92 FGq-----eG~~NiLVid-LLGP-SLEDLFD~CgR--------~FS--------------------vKTV~miA~Qmi~r  136 (449)
T KOG1165|consen   92 FGQ-----EGKYNILVID-LLGP-SLEDLFDLCGR--------RFS--------------------VKTVAMIAKQMITR  136 (449)
T ss_pred             ecc-----ccchhhhhhh-hhCc-CHHHHHHHhcC--------ccc--------------------HHhHHHHHHHHHHH
Confidence            776     7788899999 8888 99988876542        444                    35678899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcC----CCCeEEEeeecccccccCCC----------------CCCCCcccccCCCCCCc
Q 005958          244 VNYLHSHGLAHTELRLENVHISP----VDRHIKVGILGNAADFYEDG----------------PNNSSPDSNMDRRQMMI  303 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~----~~~~vKL~DFGlA~~~~~~~----------------~~Y~APE~l~~~~~ys~  303 (667)
                      ++|+|++.+|.|||||+|+||..    +...|.|+|||+|+.+.++.                ..||+----+++ .-+.
T Consensus       137 ie~vH~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~TkqHIPYrE~KSLsGTARYMSINTHlGr-EQSR  215 (449)
T KOG1165|consen  137 IEYVHEKDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPKTKQHIPYREHKSLSGTARYMSINTHLGR-EQSR  215 (449)
T ss_pred             HHHHHhcceeecccCccceeecCCCCCCCceEEEEeccchhhhcCccccccCccccccccccceeeeEeeccccc-hhhh
Confidence            99999999999999999999975    23579999999999876654                346665533433 3577


Q ss_pred             hhhHHHHHHHHHHHHhCCCCChhh
Q 005958          304 AFDMRCVGFMMAKMVLRELMDPLI  327 (667)
Q Consensus       304 ksDIWSLGviLyemltG~~PF~~~  327 (667)
                      .-|+=|||-+++..+-|..||++.
T Consensus       216 RDDLEaLGHvFmYFLRGsLPWQGL  239 (449)
T KOG1165|consen  216 RDDLEALGHVFMYFLRGSLPWQGL  239 (449)
T ss_pred             hhhHHHhhhhhhhhccCCCccccc
Confidence            899999999999999999999853

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.83  E-value=3.7e-20  Score=183.19  Aligned_cols=139  Identities=14%  Similarity=0.112  Sum_probs=104.0

Q ss_pred             EeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh----------------------------HHHHHHHHH
Q 005958           91 LDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA----------------------------QRRGRRAIE  142 (667)
Q Consensus        91 ~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~----------------------------~~~~~rEi~  142 (667)
                      .+.||+|+||    .||+|.+.      +|+.||||+++....                            .....+|++
T Consensus         2 ~~~ig~G~~~----~Vy~a~~~------~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~   71 (190)
T cd05147           2 NGCISTGKEA----NVYHATTA------NGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMR   71 (190)
T ss_pred             CCccccccce----EEEEEECC------CCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHH
Confidence            4689999999    99999986      589999999975311                            012245999


Q ss_pred             HHHHHhhccCCCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCC
Q 005958          143 VLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIG  222 (667)
Q Consensus       143 iL~~L~~~~~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~  222 (667)
                      ++.++.      ++++.....+..     ..  .+|||| |+++++|...+....         .+++            
T Consensus        72 ~l~~l~------~~~v~~p~~~~~-----~~--~~iVmE-~i~g~~l~~~~~~~~---------~~~~------------  116 (190)
T cd05147          72 NLKRLV------TAGIPCPEPILL-----KS--HVLVME-FIGDDGWAAPRLKDA---------PLSE------------  116 (190)
T ss_pred             HHHHHH------HCCCCCCcEEEe-----cC--CEEEEE-EeCCCCCcchhhhcC---------CCCH------------
Confidence            999996      555533222222     22  289999 999877765533222         3443            


Q ss_pred             CCCccccHHHHHHHHHHHHHHHHHH-HHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC
Q 005958          223 GPAASRQLRLIRLLMRDLLIGVNYL-HSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE  284 (667)
Q Consensus       223 ~~~~~~~~~~i~~i~~QIl~aL~yL-Hs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~  284 (667)
                              ..+..++.|++.+|.|| |+.||+||||||+|||++.  +.++|+|||+|.....
T Consensus       117 --------~~~~~i~~qi~~~L~~l~H~~giiHrDlkP~NIli~~--~~v~LiDFG~a~~~~~  169 (190)
T cd05147         117 --------SKARELYLQVIQIMRILYQDCRLVHADLSEYNLLYHD--GKLYIIDVSQSVEHDH  169 (190)
T ss_pred             --------HHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEEC--CcEEEEEccccccCCC
Confidence                    45788999999999999 7999999999999999984  7899999999975543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.82  E-value=1.3e-19  Score=179.79  Aligned_cols=174  Identities=16%  Similarity=0.067  Sum_probs=131.6

Q ss_pred             EEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh------HHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           89 KILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA------QRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        89 ~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~------~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      .+...|++|+||    +||.+...       +.+++.+.+.....      ...+.+|+++|++|.     +|++|.+++
T Consensus         5 ~~~~~l~~~~f~----~v~~~~~~-------~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~-----~~~~vP~ll   68 (218)
T PRK12274          5 AVNEPLKSDTFG----RILLVRGG-------ERKFVRRDLSAAPWWLRGVAWWLARREALALRQLD-----GLPRTPRLL   68 (218)
T ss_pred             ccceeecCCCcc----eEEEeecC-------CceeeecccccchhhhhhHHHHHHHHHHHHHHhcC-----CCCCCCEEE
Confidence            356889999999    99976652       67888777764322      124689999999997     578899998


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      ++.         ..+++|| |+.|.+|.+.+...                                    ...++.|++.
T Consensus        69 ~~~---------~~~lvme-yI~G~~L~~~~~~~------------------------------------~~~~~~qi~~  102 (218)
T PRK12274         69 HWD---------GRHLDRS-YLAGAAMYQRPPRG------------------------------------DLAYFRAARR  102 (218)
T ss_pred             EEc---------CEEEEEe-eecCccHHhhhhhh------------------------------------hHHHHHHHHH
Confidence            852         2699999 99988886543210                                    1237889999


Q ss_pred             HHHHHHHCCCcccCC-CCCcEEEcCCCCeEEEeeecccccccCCC----------------------CCCCCcccccCCC
Q 005958          243 GVNYLHSHGLAHTEL-RLENVHISPVDRHIKVGILGNAADFYEDG----------------------PNNSSPDSNMDRR  299 (667)
Q Consensus       243 aL~yLHs~gIvHrDL-KPeNILl~~~~~~vKL~DFGlA~~~~~~~----------------------~~Y~APE~l~~~~  299 (667)
                      +|.++|++||+|||| ||+|||++. ++.++|+|||+|.......                      +.|.+|+...--.
T Consensus       103 ~L~~lH~~GIvHrDL~kp~NILv~~-~g~i~LIDFG~A~~~~~~~~~~r~L~~rDl~~llk~~~~y~~~~l~~~~~~~l~  181 (218)
T PRK12274        103 LLQQLHRCGVAHNDLAKEANWLVQE-DGSPAVIDFQLAVRGNPRARWMRLLAREDLRHLLKHKRMYCPAALTPVERRVLK  181 (218)
T ss_pred             HHHHHHHCcCccCCCCCcceEEEcC-CCCEEEEECCCceecCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhhc
Confidence            999999999999999 799999997 8899999999998554332                      3444555322111


Q ss_pred             CCC-chhhHHHHHHHHHHHHhCCCCCh
Q 005958          300 QMM-IAFDMRCVGFMMAKMVLRELMDP  325 (667)
Q Consensus       300 ~ys-~ksDIWSLGviLyemltG~~PF~  325 (667)
                      ..+ ...++++.|+-+|.|+|+..|+.
T Consensus       182 ~~~~~~~~w~~~g~~~~~~~~~~~~~~  208 (218)
T PRK12274        182 RTSWIRELWFATGKPVYRFVTRRVLHW  208 (218)
T ss_pred             cchhHHHHHHHhcchHHHHHhccCCcc
Confidence            223 56789999999999999998764

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.82  E-value=7.1e-20  Score=190.28  Aligned_cols=242  Identities=14%  Similarity=0.057  Sum_probs=143.2

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhcc----CCCCCc
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRR----LMYHSY  157 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~----~~~Hpn  157 (667)
                      .+...+.||.|+++    .||.+++..     |++.+|+|+.....     ..+.+.+|.-....+....    ...|-.
T Consensus        13 ~l~~~~~i~~g~~~----~v~~v~d~~-----t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r   83 (288)
T PF14531_consen   13 TLVRGRIIGKGGFS----IVFEVTDVE-----TGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLR   83 (288)
T ss_dssp             EEEEEEEEEEETTE----EEEEEEETT-----TTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-
T ss_pred             EEEEccccccCCce----EEEEEEEcc-----CCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhce
Confidence            46788999999999    999999998     89999999986422     1233344432222211000    000223


Q ss_pred             ceEEEEEEEeccc-------CCCC-----eEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCC
Q 005958          158 SMQVHGYVSSHTT-------SGRS-----LFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPA  225 (667)
Q Consensus       158 Iv~l~~~~~~~~~-------~~~~-----~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~  225 (667)
                      ++.-++....++.       .+..     ..+++|+ -+.+ ||.+++..-....      ....               
T Consensus        84 ~l~P~d~~~i~~~~~~~~~~~~~~~~~v~n~~~l~P-~~~~-dL~~~~~~l~~~~------~~~~---------------  140 (288)
T PF14531_consen   84 FLVPLDLLRIPGKPPFFERGPGQSIYWVLNRFLLMP-RAQG-DLQDLVEALFSRA------QTHS---------------  140 (288)
T ss_dssp             B---SEEEEETTS-SEEEECETTEEEEEESEEEEEE---SE-EHHHHHHHHHHHT------TTSH---------------
T ss_pred             EEeeeEEEEEcCCCcceecCCCCccceeehhhhccc-hhhh-cHHHHHHHHhhcc------cccc---------------
Confidence            3333333321100       0112     3478899 8877 9998875311000      0000               


Q ss_pred             ccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeeccccccc------CCCCCCCCcccccC--
Q 005958          226 ASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFY------EDGPNNSSPDSNMD--  297 (667)
Q Consensus       226 ~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~------~~~~~Y~APE~l~~--  297 (667)
                       .+....-..+..|+++.+++||+.||+|+||||+|++++. +|.++|+||+.....+      .....|.+||....  
T Consensus       141 -~l~~~arl~lT~Q~I~lvA~Lh~~GlVHgdi~~~nfll~~-~G~v~Lg~F~~~~r~g~~~~~~~~~~~~~PPe~~~~~~  218 (288)
T PF14531_consen  141 -PLAFAARLSLTVQMIRLVANLHSYGLVHGDIKPENFLLDQ-DGGVFLGDFSSLVRAGTRYRCSEFPVAFTPPELESCAG  218 (288)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEE-T-TS-EEE--GGGEEETTEEEEGGGS-TTTS-HHHHHHHT
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHhhcceEecccceeeEEEcC-CCCEEEcChHHHeecCceeeccCCCcccCChhhhhhhc
Confidence             0111122445699999999999999999999999999999 9999999998876443      22367889995432  


Q ss_pred             -----CCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHH
Q 005958          298 -----RRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGA  372 (667)
Q Consensus       298 -----~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e  372 (667)
                           ...++.+.|.|+||+++|.|++|..||........       +..                   .+..-.+.++.
T Consensus       219 ~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~~~~~~~~-------~~~-------------------~f~~C~~~Pe~  272 (288)
T PF14531_consen  219 QFGQNNAPYTFATDAWQLGITLYSLWCGRLPFGLSSPEAD-------PEW-------------------DFSRCRDMPEP  272 (288)
T ss_dssp             SCHHSEEEE-HHHHHHHHHHHHHHHHHSS-STCCCGGGST-------SGG-------------------GGTTSS---HH
T ss_pred             ccCcccceeeeccCHHHHHHHHHHHHHccCCCCCCCcccc-------ccc-------------------cchhcCCcCHH
Confidence                 23578899999999999999999999963211110       000                   01111145678


Q ss_pred             HHHHHHHhhhcCcCCC
Q 005958          373 GWNLLSLLLATKPSKR  388 (667)
Q Consensus       373 ~~dLI~~~L~~DP~kR  388 (667)
                      +++||.+||++||++|
T Consensus       273 v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  273 VQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             HHHHHHHHT-SSGGGS
T ss_pred             HHHHHHHHccCCcccC
Confidence            9999999999999988

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.81  E-value=2.9e-19  Score=176.60  Aligned_cols=138  Identities=16%  Similarity=0.127  Sum_probs=106.2

Q ss_pred             EeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh----------------------------HHHHHHHHH
Q 005958           91 LDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA----------------------------QRRGRRAIE  142 (667)
Q Consensus        91 ~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~----------------------------~~~~~rEi~  142 (667)
                      .+.||+|+||    .||+|.+.      +|+.||||+++....                            .....+|.+
T Consensus         2 ~~~ig~G~~~----~Vy~a~~~------~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~   71 (190)
T cd05145           2 NGCISTGKEA----NVYHARTG------DGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFR   71 (190)
T ss_pred             CceeecCCCc----EEEEEEcC------CCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHH
Confidence            5789999999    99999976      589999999885311                            112357899


Q ss_pred             HHHHHhhccCCCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHH-HHhcCCCcccccccCCCHHHHhhcCCCCC
Q 005958          143 VLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHW-LQQADWLPTLEATLALDEESVRKVGDDSI  221 (667)
Q Consensus       143 iL~~L~~~~~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~-i~~~~~~~~l~~~~~l~E~~a~~~~~~~~  221 (667)
                      .+.++.      |++|.....+..     ..  .||||| |++++++... +.. .         .+++           
T Consensus        72 ~l~~l~------~~~i~~p~~~~~-----~~--~~lVmE-~~~g~~~~~~~l~~-~---------~~~~-----------  116 (190)
T cd05145          72 NLKRLY------EAGVPVPEPILL-----KK--NVLVME-FIGDDGSPAPRLKD-V---------PLEE-----------  116 (190)
T ss_pred             HHHHHH------hCCCCCceEEEe-----cC--CEEEEE-EecCCCchhhhhhh-c---------cCCH-----------
Confidence            999995      888755444443     22  389999 9998755443 332 1         3333           


Q ss_pred             CCCCccccHHHHHHHHHHHHHHHHHHHH-CCCcccCCCCCcEEEcCCCCeEEEeeecccccccC
Q 005958          222 GGPAASRQLRLIRLLMRDLLIGVNYLHS-HGLAHTELRLENVHISPVDRHIKVGILGNAADFYE  284 (667)
Q Consensus       222 ~~~~~~~~~~~i~~i~~QIl~aL~yLHs-~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~  284 (667)
                               ..+..++.|++.+|.+||+ +||+||||||+|||++  ++.++|+|||+|.....
T Consensus       117 ---------~~~~~i~~~l~~~l~~lH~~~givHrDlkP~NIll~--~~~~~liDFG~a~~~~~  169 (190)
T cd05145         117 ---------EEAEELYEQVVEQMRRLYQEAGLVHGDLSEYNILYH--DGKPYIIDVSQAVELDH  169 (190)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHhCCEecCCCChhhEEEE--CCCEEEEEcccceecCC
Confidence                     3467799999999999999 9999999999999998  68899999999976644

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PRK10345 hypothetical protein; Provisional

Probab=99.80  E-value=6.8e-19  Score=176.57  Aligned_cols=142  Identities=18%  Similarity=0.254  Sum_probs=106.9

Q ss_pred             EEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEe
Q 005958           90 ILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSS  167 (667)
Q Consensus        90 i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~  167 (667)
                      -.+.||+|+||    .||.  +..     ++.. +||++...  ...+...+|+.+++.+.+ ...+||||+++++++++
T Consensus         6 ~~~~LG~G~~~----~Vy~--hp~-----~~~k-~IKv~~~~~~~~~~~~~rEi~~l~~L~~-~~~~h~nIvr~yg~~et   72 (210)
T PRK10345          6 EQSPLGTGRHR----KCYA--HPE-----DAQR-CIKIVYHRGDGGDKEIRRELKYYAHLSR-RLIDWSGIPRYYGTVET   72 (210)
T ss_pred             CcceecCCCce----EEEE--CCC-----CcCe-EEEEEeccccchHHHHHHHHHHHHHhhc-cCCCCcccceeeEEEEe
Confidence            35789999999    9995  554     4555 69988753  234568999999999953 33458999999999984


Q ss_pred             cccCCCCeEE-EEEccCCC--CCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHH
Q 005958          168 HTTSGRSLFT-LVHGQYHG--SFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGV  244 (667)
Q Consensus       168 ~~~~~~~~~~-lVmE~~~~--~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL  244 (667)
                      ..  ..+.++ +||| |++  +|+|.+++++.          .++|.                      ..++.|++.++
T Consensus        73 ~~--g~g~v~~~I~e-~~G~~~~tL~~~l~~~----------~~~e~----------------------~~~~~~~L~~l  117 (210)
T PRK10345         73 DC--GTGYVYDVIAD-FDGKPSITLTEFAEQC----------RYEED----------------------VAQLRQLLKKL  117 (210)
T ss_pred             CC--CCeEEEEEEec-CCCCcchhHHHHHHcc----------cccHh----------------------HHHHHHHHHHH
Confidence            31  224534 7899 944  78999999763          23331                      24688888888


Q ss_pred             -HHHHHCCCcccCCCCCcEEEcCC---CCeEEEeeeccc
Q 005958          245 -NYLHSHGLAHTELRLENVHISPV---DRHIKVGILGNA  279 (667)
Q Consensus       245 -~yLHs~gIvHrDLKPeNILl~~~---~~~vKL~DFGlA  279 (667)
                       +|||+++|+||||||+|||++..   +..++|+||+-+
T Consensus       118 ~~yLh~~~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~  156 (210)
T PRK10345        118 KRYLLDNRIVTMELKPQNILCQRISESEVIPVVCDNIGE  156 (210)
T ss_pred             HHHHHHCCEeecCCCHHHEEEeccCCCCCcEEEEECCCC
Confidence             99999999999999999999741   348999995444

>smart00090 RIO RIO-like kinase

Probab=99.74  E-value=7.2e-18  Score=172.57  Aligned_cols=143  Identities=15%  Similarity=0.113  Sum_probs=107.4

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEE-EcCCCCCCCCcEEEEEEEcchhh--------------------------HHHHHH
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAI-VKDSNSPLHNTKVVLRQLISVQA--------------------------QRRGRR  139 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~-~~~~~~~~tg~~vAvK~i~~~~~--------------------------~~~~~r  139 (667)
                      .|++.+.||+|+||    .||+|. +..     +|+.||||+++....                          .....+
T Consensus        29 ~~~i~~~Lg~G~~g----~Vy~a~~~~~-----~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (237)
T smart00090       29 LSAIGGCISTGKEA----NVYHALDFDG-----SGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEK   99 (237)
T ss_pred             hHHhCCeeccCcce----eEEEEEecCC-----CCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHH
Confidence            48899999999999    999999 555     799999999874310                          123468


Q ss_pred             HHHHHHHHhhccCCCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCC
Q 005958          140 AIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDD  219 (667)
Q Consensus       140 Ei~iL~~L~~~~~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~  219 (667)
                      |+.++.++.+    .+..+.+++++         ...++||| |+++++|..++....         .+.+         
T Consensus       100 E~~~L~~L~~----~~i~~p~~~~~---------~~~~lV~E-~~~g~~L~~~~~~~~---------~~~~---------  147 (237)
T smart00090      100 EFRNLQRLYE----AGVPVPKPIAW---------RRNVLVME-FIGGDGLPAPRLKDV---------EPEE---------  147 (237)
T ss_pred             HHHHHHHHHh----cCCCCCeeeEe---------cCceEEEE-EecCCcccccccccC---------Ccch---------
Confidence            9999999951    02233344432         12489999 999988876542211         2222         


Q ss_pred             CCCCCCccccHHHHHHHHHHHHHHHHHHHHCC-CcccCCCCCcEEEcCCCCeEEEeeeccccccc
Q 005958          220 SIGGPAASRQLRLIRLLMRDLLIGVNYLHSHG-LAHTELRLENVHISPVDRHIKVGILGNAADFY  283 (667)
Q Consensus       220 ~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs~g-IvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~  283 (667)
                                 ..+..++.||+.+|.+||++| |+||||||+||+++  ++.++|+|||.|....
T Consensus       148 -----------~~~~~i~~qi~~~l~~LH~~g~iiH~Dikp~NIli~--~~~i~LiDFg~a~~~~  199 (237)
T smart00090      148 -----------EEEFELYDDILEEMRKLYKEGELVHGDLSEYNILVH--DGKVVIIDVSQSVELD  199 (237)
T ss_pred             -----------HHHHHHHHHHHHHHHHHHhcCCEEeCCCChhhEEEE--CCCEEEEEChhhhccC
Confidence                       345679999999999999999 99999999999998  6789999999986543

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=2.4e-17  Score=193.04  Aligned_cols=191  Identities=16%  Similarity=0.164  Sum_probs=146.6

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ..+....|.|.+.||+|+||    .||.|.+..      |+.||+|+=++...-+ +.-=.+++.+|+   ..--+.|+.
T Consensus       693 ~~~~~~~~~I~~e~G~g~y~----~vy~a~~~~------~~~~alK~e~P~~~WE-fYI~~q~~~RLk---~~~~~~~~~  758 (974)
T KOG1166|consen  693 FEVGGEKFCISKEIGEGSYG----SVYVATHSN------GKLVALKVEKPPNPWE-FYICLQVMERLK---PQMLPSIMH  758 (974)
T ss_pred             eeecceeEEEEeeeccccce----EEEEeecCC------CcEEEEEeecCCCcee-eeehHHHHHhhc---hhhhcchHH
Confidence            34556789999999999999    999999884      8999999976532111 111122333332   002456777


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      ++.++.     ..+.-++|+| |.+.|+|.+++...+         .++|                    ..+..+..|+
T Consensus       759 ~~~a~~-----~~~~S~lv~e-y~~~Gtlld~~N~~~---------~m~e--------------------~lv~~~~~qm  803 (974)
T KOG1166|consen  759 ISSAHV-----FQNASVLVSE-YSPYGTLLDLINTNK---------VMDE--------------------YLVMFFSCQM  803 (974)
T ss_pred             HHHHHc-----cCCcceeeee-ccccccHHHhhccCC---------CCCc--------------------hhhhHHHHHH
Confidence            777776     6678899999 999999999999554         2332                    4678899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcC------CCCeEEEeeeccccccc---CCC--------CCCCCcccccCCCCCCc
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISP------VDRHIKVGILGNAADFY---EDG--------PNNSSPDSNMDRRQMMI  303 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~------~~~~vKL~DFGlA~~~~---~~~--------~~Y~APE~l~~~~~ys~  303 (667)
                      +.-|++||..+|||+||||+|+||..      ...-++|+|||.+..+.   ++.        ..+-.+| +..+++|++
T Consensus       804 l~ive~lH~~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siDm~lfp~~~~F~~~~~td~f~C~E-M~~grpWtY  882 (974)
T KOG1166|consen  804 LRIVEHLHAMGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSIDMKLFPDGTKFKAVWHTDLFDCIE-MREGRPWTY  882 (974)
T ss_pred             HHHHHHHHhcceecccCCcceeEeecccCCCCcccceEEEecccceeeeEcCCCcEEeeeeccccchhHH-HhcCCCCch
Confidence            99999999999999999999999964      23469999999997543   221        3455899 677788999


Q ss_pred             hhhHHHHHHHHHHHHhCC
Q 005958          304 AFDMRCVGFMMAKMVLRE  321 (667)
Q Consensus       304 ksDIWSLGviLyemltG~  321 (667)
                      .+|.|.|..++|-||.|+
T Consensus       883 q~DyfGlAa~~h~mLFG~  900 (974)
T KOG1166|consen  883 QIDYFGLAATVHVMLFGK  900 (974)
T ss_pred             hhhhHHHHHHHHHHHHHH
Confidence            999999999999999997

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.71  E-value=1.2e-17  Score=181.04  Aligned_cols=248  Identities=21%  Similarity=0.270  Sum_probs=157.1

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--hHHHHHHHHHHHHHHhhccCCCCCcceEEE-
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH-  162 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~-  162 (667)
                      ..+.+.+..+..+++    .++........  .....++-+......  ......+++-.+....     .|+..+..- 
T Consensus       244 ~s~~~~k~~~~~~~~----~~~~~q~~~~~--s~~E~~~s~~~~~d~~~~~~~~~r~~~~l~~~~-----~~~~s~~~d~  312 (516)
T KOG1033|consen  244 GSSSISKSSERVSSG----IVFEKQGKNNS--SLREWLKSKRADVDSLCACKYTFRQLGVLVDSS-----HSNRSILEDL  312 (516)
T ss_pred             ccccccccccccccC----Cchhhhhcccc--hhhhhccchhhhccchhhhhhhhhhhhheeccc-----cCCcccccCC
Confidence            344555666666666    55554433210  012333333333221  2233455666655554     344433221 


Q ss_pred             -----EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          163 -----GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       163 -----~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                           ..+.........++||.|+ +|...+|.+||..+....                          ..++..+..++
T Consensus       313 ~~s~~~~~~~~~v~~~~~lyI~Mn-~c~~~tledWl~rr~~~e--------------------------~~s~s~~~~~~  365 (516)
T KOG1033|consen  313 RPSLFESSKRNKVGKKVYLYIQMN-LCEKETLEDWLRRRRTGE--------------------------ERSLSLMLDIF  365 (516)
T ss_pred             CCchhhhccccccccccchhhhhh-hhhhhhHHHHhhCCCccc--------------------------ccchhHHHHHH
Confidence                 1111111113447999999 999999999998654211                          12345788999


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC---------------CCCCCcccccCCCCCC
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG---------------PNNSSPDSNMDRRQMM  302 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~---------------~~Y~APE~l~~~~~ys  302 (667)
                      .|++.|++|   +|.+|||+||.||++.. +..+||+|||+........               ..||+||.+.+. .|+
T Consensus       366 ~q~~~~~~y---k~~ihrdlkp~nif~~~-d~q~kIgDFgl~ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~-~y~  440 (516)
T KOG1033|consen  366 KQIAPAVEY---KGLIHRDLKPSNIFFSD-DDQLKIGDFGLVTSQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQ-QYS  440 (516)
T ss_pred             Hhhccchhh---ccchhhhcccccccccc-chhhhhhhhhheeecccCCcccchhhhhhhcccccccCCHHHHhhh-hhh
Confidence            999999999   99999999999999998 7899999999987554332               679999966544 599


Q ss_pred             chhhHHHHHHHHHHHHhC-CCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhh
Q 005958          303 IAFDMRCVGFMMAKMVLR-ELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLL  381 (667)
Q Consensus       303 ~ksDIWSLGviLyemltG-~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L  381 (667)
                      .++||||||+||||++.- ...|.... .+..+.....++..                       -...++-.+|+.+||
T Consensus       441 ~kvdIyaLGlil~EL~~~f~T~~er~~-t~~d~r~g~ip~~~-----------------------~~d~p~e~~ll~~ll  496 (516)
T KOG1033|consen  441 EKVDIYALGLILAELLIQFSTQFERIA-TLTDIRDGIIPPEF-----------------------LQDYPEEYTLLQQLL  496 (516)
T ss_pred             hhcchhhHHHHHHHHHHHhccHHHHHH-hhhhhhcCCCChHH-----------------------hhcCcHHHHHHHHhc
Confidence            999999999999999972 22221100 00000000001111                       112346679999999


Q ss_pred             hcCcCCCCCHHHHHcCCCC
Q 005958          382 ATKPSKRISCLDALRHPFL  400 (667)
Q Consensus       382 ~~DP~kRpSa~elL~HPwf  400 (667)
                      .+.|.+||++.+.--|+|.
T Consensus       497 s~~p~~RP~~~~~~~~~~~  515 (516)
T KOG1033|consen  497 SPSPEERPSAIEVALHEFL  515 (516)
T ss_pred             CCCcccCchHHHHhhhhhc
Confidence            9999999988888778775

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.69  E-value=1.3e-17  Score=166.56  Aligned_cols=244  Identities=16%  Similarity=0.150  Sum_probs=178.2

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      ...+.+.+..++.+|.+...|    ..|+|++..       ..++.|+++..+    ..+++..|.-.|+-+.      |
T Consensus       184 ~~gid~~~lnl~tkl~e~hsg----elwrgrwqg-------ndivakil~vr~~t~risrdfneefp~lrifs------h  246 (448)
T KOG0195|consen  184 YTGIDVSSLNLITKLAESHSG----ELWRGRWQG-------NDIVAKILNVREVTARISRDFNEEFPALRIFS------H  246 (448)
T ss_pred             ccCcchhhhhhhhhhccCCCc----ccccccccC-------cchhhhhhhhhhcchhhcchhhhhCcceeeec------C
Confidence            344566777888999999999    999999984       567778876432    3355677777777774      9


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      |||+.+++.+.     ...++.++.. |++.|+|+..+.....       .-.+.                    .++..
T Consensus       247 pnilpvlgacn-----sppnlv~isq-~mp~gslynvlhe~t~-------vvvd~--------------------sqav~  293 (448)
T KOG0195|consen  247 PNILPVLGACN-----SPPNLVIISQ-YMPFGSLYNVLHEQTS-------VVVDH--------------------SQAVR  293 (448)
T ss_pred             Cchhhhhhhcc-----CCCCceEeee-eccchHHHHHHhcCcc-------EEEec--------------------chHHH
Confidence            99999999998     5678999999 9999999999987531       11221                    35677


Q ss_pred             HHHHHHHHHHHHHHCC--CcccCCCCCcEEEcCCCCeEEE--ee--ecccccccCCCCCCCCcccccCCCCC--CchhhH
Q 005958          236 LMRDLLIGVNYLHSHG--LAHTELRLENVHISPVDRHIKV--GI--LGNAADFYEDGPNNSSPDSNMDRRQM--MIAFDM  307 (667)
Q Consensus       236 i~~QIl~aL~yLHs~g--IvHrDLKPeNILl~~~~~~vKL--~D--FGlA~~~~~~~~~Y~APE~l~~~~~y--s~ksDI  307 (667)
                      ++.++++|++|||+..  |----|....++|++ +-+.+|  +|  |.+-..-..-.|.||+||.+......  -.++|+
T Consensus       294 faldiargmaflhslep~ipr~~lns~hvmide-dltarismad~kfsfqe~gr~y~pawmspealqrkped~n~raadm  372 (448)
T KOG0195|consen  294 FALDIARGMAFLHSLEPMIPRFYLNSKHVMIDE-DLTARISMADTKFSFQEVGRAYSPAWMSPEALQRKPEDLNIRAADM  372 (448)
T ss_pred             HHHHHHhhHHHHhhcchhhhhhhcccceEEecc-hhhhheecccceeeeeccccccCcccCCHHHHhcCchhcchhhhhH
Confidence            9999999999999974  444468888999998 655554  44  32222222334889999966543322  348999


Q ss_pred             HHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          308 RCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       308 WSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      |||.+++|||.|++.||.+...+..     |      -+.-   +      ......+++.++.....|+.-|++.||.+
T Consensus       373 wsfaillwel~trevpfadlspmec-----g------mkia---l------eglrv~ippgis~hm~klm~icmnedpgk  432 (448)
T KOG0195|consen  373 WSFAILLWELNTREVPFADLSPMEC-----G------MKIA---L------EGLRVHIPPGISRHMNKLMNICMNEDPGK  432 (448)
T ss_pred             HHHHHHHHHhhccccccccCCchhh-----h------hhhh---h------ccccccCCCCccHHHHHHHHHHhcCCCCc
Confidence            9999999999999999975432211     1      1110   1      11234567888999999999999999999


Q ss_pred             CCCHHHH
Q 005958          388 RISCLDA  394 (667)
Q Consensus       388 RpSa~el  394 (667)
                      ||..+.+
T Consensus       433 rpkfdmi  439 (448)
T KOG0195|consen  433 RPKFDMI  439 (448)
T ss_pred             CCCccee
Confidence            9987765

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.69  E-value=1.9e-16  Score=157.32  Aligned_cols=136  Identities=14%  Similarity=0.122  Sum_probs=106.1

Q ss_pred             eEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh------------------------hHHHHHHHHHH
Q 005958           88 FKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ------------------------AQRRGRRAIEV  143 (667)
Q Consensus        88 y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~------------------------~~~~~~rEi~i  143 (667)
                      |.+.+.||.|+||    .||+|...      +++.||||++....                        ......+|+.+
T Consensus        17 ~~~~~~i~~G~~g----~Vy~~~~~------~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~   86 (198)
T cd05144          17 ESLGNQIGVGKES----DVYLALDP------DGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAA   86 (198)
T ss_pred             hhcCCccccCcce----EEEEEEcC------CCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHH
Confidence            7888999999999    99999875      58999999876421                        01124678999


Q ss_pred             HHHHhhccCCCCC--cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCC
Q 005958          144 LKKLVRRRLMYHS--YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSI  221 (667)
Q Consensus       144 L~~L~~~~~~~Hp--nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~  221 (667)
                      +..+.      |+  .+...++.         +..++||| |+++++|.++...                          
T Consensus        87 l~~l~------~~~i~v~~~~~~---------~~~~lv~e-~~~g~~L~~~~~~--------------------------  124 (198)
T cd05144          87 LKALY------EEGFPVPKPIDW---------NRHAVVME-YIDGVELYRVRVL--------------------------  124 (198)
T ss_pred             HHHHH------HcCCCCCceeec---------CCceEEEE-EeCCcchhhcccc--------------------------
Confidence            99995      55  34444331         33589999 9999888765321                          


Q ss_pred             CCCCccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC
Q 005958          222 GGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED  285 (667)
Q Consensus       222 ~~~~~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~  285 (667)
                               .....++.+++.++.++|+.||+||||||+||+++. ++.++|+|||.|......
T Consensus       125 ---------~~~~~~~~~i~~~l~~lh~~gi~H~Dl~p~Nill~~-~~~~~liDfg~~~~~~~~  178 (198)
T cd05144         125 ---------EDPEEVLDEILEEIVKAYKHGIIHGDLSEFNILVDD-DEKIYIIDWPQMVSTDHP  178 (198)
T ss_pred             ---------ccHHHHHHHHHHHHHHHHHCCCCcCCCCcccEEEcC-CCcEEEEECCccccCCCc
Confidence                     123568899999999999999999999999999998 899999999999665543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.68  E-value=3.6e-16  Score=156.17  Aligned_cols=132  Identities=20%  Similarity=0.191  Sum_probs=107.5

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----------hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----------AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----------~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      +.||+|++|    .||+|.+.       +..+++|+.....          ......+|+.++..+.      |++|...
T Consensus         2 ~~l~~G~~~----~vy~~~~~-------~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~------~~~i~~p   64 (211)
T PRK14879          2 KLIKRGAEA----EIYLGDFL-------GIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRAR------KAGVNVP   64 (211)
T ss_pred             cccccCceE----EEEEEeeC-------CCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHH------HCCCCCC
Confidence            579999999    99999873       5679999865311          1134578999999995      8888766


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ..++.     ..+..++||| |++|++|.+++....                                 .....++.+++
T Consensus        65 ~~~~~-----~~~~~~lv~e-~~~G~~L~~~~~~~~---------------------------------~~~~~i~~~i~  105 (211)
T PRK14879         65 AVYFV-----DPENFIIVME-YIEGEPLKDLINSNG---------------------------------MEELELSREIG  105 (211)
T ss_pred             eEEEE-----eCCCCEEEEE-EeCCcCHHHHHHhcc---------------------------------HHHHHHHHHHH
Confidence            66665     4567889999 999999999987532                                 02466999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeeccccc
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAAD  281 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~  281 (667)
                      .+|.+||+.|++|+|++|.|||++  ++.++|+|||.+..
T Consensus       106 ~~l~~lH~~~i~H~Dl~p~Nil~~--~~~~~liDf~~a~~  143 (211)
T PRK14879        106 RLVGKLHSAGIIHGDLTTSNMILS--GGKIYLIDFGLAEF  143 (211)
T ss_pred             HHHHHHHhCCcccCCCCcccEEEE--CCCEEEEECCcccC
Confidence            999999999999999999999998  57899999999854

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=4.6e-18  Score=194.77  Aligned_cols=254  Identities=17%  Similarity=0.191  Sum_probs=195.6

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ...|.+.+.||+|+|+    .|-.+.....    ....+|.|.+....    .......|..+-+.+.     .|+|++.
T Consensus        19 ~~~~~~~~~ig~gs~~----~~~~~~~~~~----~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s-----~h~n~~~   85 (601)
T KOG0590|consen   19 NSQYKLSRSIGKGSFS----SSALASNSRD----PESSSATKPISIPPKSEDSSEHIDTETDIQKKLS-----KHSNTVH   85 (601)
T ss_pred             cccccccccccccccc----hhhhhhhcCC----CcceeeccCCCCCCCccchhhhcCcccccccccc-----ccccccc
Confidence            4668888899999999    8888877552    45677888776432    2234466888888885     5999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++...     ..+..+++++ |..+|++++.+.....       ...+                    ......++.|+
T Consensus        86 ~~~~~~-----~~~~~~~~~~-~s~g~~~f~~i~~~~~-------~~~~--------------------~~~~~~~~~ql  132 (601)
T KOG0590|consen   86 MIEPSS-----SPRSYLLSLS-YSDGGSLFSKISHPDS-------TGTS--------------------SSSASRYLPQL  132 (601)
T ss_pred             cCCccC-----CCcccccccC-cccccccccccccCCc-------cCCC--------------------Ccchhhhhhhh
Confidence            999988     7889999999 8999999988732110       0111                    13456799999


Q ss_pred             HHHHHHHH-HCCCcccCCCCCcEEEcCCCC-eEEEeeecccccccC-C------------CCCCCCcccccCCCCCCchh
Q 005958          241 LIGVNYLH-SHGLAHTELRLENVHISPVDR-HIKVGILGNAADFYE-D------------GPNNSSPDSNMDRRQMMIAF  305 (667)
Q Consensus       241 l~aL~yLH-s~gIvHrDLKPeNILl~~~~~-~vKL~DFGlA~~~~~-~------------~~~Y~APE~l~~~~~ys~ks  305 (667)
                      ..++.|+| ..++.||||||+|.+++. .+ .++++|||+|..+.. .            .+.|+|||...+........
T Consensus       133 ~s~l~~~H~~~~~~h~~ikP~n~~l~~-s~~~l~~~df~~At~~~~~~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~  211 (601)
T KOG0590|consen  133 NSGLSYLHPENGVTHRDIKPSNSLLDE-SGSALKIADFGLATAYRNKNGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSV  211 (601)
T ss_pred             ccCccccCcccccccCCCCCccchhcc-CCCcccCCCchhhccccccCCcceeeecccCCCCCCCCcccccchhhcCCCc
Confidence            99999999 999999999999999998 67 999999999987665 2            37799999777666778999


Q ss_pred             hHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCc
Q 005958          306 DMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       306 DIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      |+||.|+++.-|++|..|+.........          ...++.    .   ........+...+..+.+++.++|..+|
T Consensus       212 d~~S~g~~l~~~~~g~~p~~~~~~~~~~----------~~~~~~----~---~~~~~~~~~~~~~~~~~~~l~k~l~~~~  274 (601)
T KOG0590|consen  212 DVWSLGIVLSAMLTGELPWDFPSRKDGR----------YSSWKS----N---KGRFTQLPWNSISDQAHDLLHKILKENP  274 (601)
T ss_pred             ccccccccccccccCCCCcccccccccc----------ceeecc----c---ccccccCccccCChhhhhcccccccCCc
Confidence            9999999999999999987522111100          000000    0   0111244567788899999999999999


Q ss_pred             CCCCCHHHHHcCCCCCC
Q 005958          386 SKRISCLDALRHPFLCG  402 (667)
Q Consensus       386 ~kRpSa~elL~HPwf~~  402 (667)
                      +.|.+.+++-.+||+..
T Consensus       275 ~~r~s~~~~~~d~~~~~  291 (601)
T KOG0590|consen  275 SNRLSIEELKLDNWLSS  291 (601)
T ss_pred             hhccccccccccccccc
Confidence            99999999999999988

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.67  E-value=3.1e-16  Score=172.88  Aligned_cols=198  Identities=20%  Similarity=0.188  Sum_probs=145.9

Q ss_pred             CCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHH
Q 005958          153 MYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRL  232 (667)
Q Consensus       153 ~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~  232 (667)
                      +.|.|+.+++|...     ++...++|.+ ||..|+|.+.+....        +.++.                    -.
T Consensus         4 l~h~n~~~f~g~~~-----~~~~~~~i~~-~c~rGsl~D~i~~~~--------~~~d~--------------------~F   49 (484)
T KOG1023|consen    4 LDHDNLNKFIGASV-----DGPEMIVIWE-YCSRGSLLDILSNED--------IKLDY--------------------FF   49 (484)
T ss_pred             cchhhhhhheeeEe-----cCCceEEEEe-eecCccHHhHHhccc--------cCccH--------------------HH
Confidence            36999999999999     7799999999 999999999998742        12331                    34


Q ss_pred             HHHHHHHHHHHHHHHHHCCC-cccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCC-
Q 005958          233 IRLLMRDLLIGVNYLHSHGL-AHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRR-  299 (667)
Q Consensus       233 i~~i~~QIl~aL~yLHs~gI-vHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~-  299 (667)
                      ...++++|+.||.|||..-| .|+.|+..|.+++. ...+||+|||+.......           ...|.|||.+.... 
T Consensus        50 ~~s~~rdi~~Gl~ylh~s~i~~hg~l~s~nClvd~-~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~  128 (484)
T KOG1023|consen   50 ILSFIRDISKGLAYLHNSPIGYHGALKSSNCLVDS-RWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALS  128 (484)
T ss_pred             HHHHHHHHHHHHHHHhcCcceeeeeeccccceeee-eEEEEechhhhcccccccccccccchhHHHHhccCHHHhccccc
Confidence            56789999999999999866 99999999999999 899999999998766421           14588999665431 


Q ss_pred             -----CCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHH
Q 005958          300 -----QMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGW  374 (667)
Q Consensus       300 -----~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~  374 (667)
                           .-+.+.||||+|+++||+++..-||.....        ...+   .+.+..+...........+.......+++.
T Consensus       129 ~~~~~~~~~~gdiYs~~ii~~ei~~r~~~~~~~~~--------~~~~---~eii~~~~~~~~~~~rP~i~~~~e~~~~l~  197 (484)
T KOG1023|consen  129 QSLESALTQKGDIYSFGIIMYEILFRSGPFDLRNL--------VEDP---DEIILRVKKGGSNPFRPSIELLNELPPELL  197 (484)
T ss_pred             ccccccccccCCeehHHHHHHHHHhccCccccccc--------cCCh---HHHHHHHHhcCCCCcCcchhhhhhcchHHH
Confidence                 146689999999999999999999863211        1111   222222222111111111221224556899


Q ss_pred             HHHHHhhhcCcCCCCCHHHHHc
Q 005958          375 NLLSLLLATKPSKRISCLDALR  396 (667)
Q Consensus       375 dLI~~~L~~DP~kRpSa~elL~  396 (667)
                      .++.+||..+|++||+++++-.
T Consensus       198 ~l~~~cw~e~P~~rPs~~~i~~  219 (484)
T KOG1023|consen  198 LLVARCWEEIPEKRPSIEQIRS  219 (484)
T ss_pred             HHHHHhcccChhhCccHHHHHh
Confidence            9999999999999999998753

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.65  E-value=8.8e-16  Score=152.02  Aligned_cols=128  Identities=17%  Similarity=0.229  Sum_probs=100.7

Q ss_pred             EeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----------hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           93 RVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----------AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        93 ~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----------~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      .||+|+||    .||+|..       .+..|++|......          ...++.+|++++..+.      |+++....
T Consensus         1 ~ig~G~~~----~vy~~~~-------~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~------~~~i~~p~   63 (199)
T TIGR03724         1 LIAKGAEA----IIYLGDF-------LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRAR------KAGVNTPV   63 (199)
T ss_pred             CCCCCceE----EEEEeec-------CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHH------HCCCCCCE
Confidence            37999999    9999984       36789999865311          1244578999999996      66544333


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      .++.     .....++||| |++|++|.+++....                                    ..++.|++.
T Consensus        64 ~~~~-----~~~~~~lv~e-~~~g~~l~~~~~~~~------------------------------------~~~~~~i~~  101 (199)
T TIGR03724        64 VYDV-----DPDNKTIVME-YIEGKPLKDVIEEGN------------------------------------DELLREIGR  101 (199)
T ss_pred             EEEE-----ECCCCEEEEE-EECCccHHHHHhhcH------------------------------------HHHHHHHHH
Confidence            3333     3445689999 999999999876421                                    048999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeeccccc
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAAD  281 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~  281 (667)
                      +|.+||+.|++|+|++|+||+++  ++.++++|||++..
T Consensus       102 ~l~~lH~~gi~H~Dl~~~Nil~~--~~~~~liDfg~a~~  138 (199)
T TIGR03724       102 LVGKLHKAGIVHGDLTTSNIIVR--DDKLYLIDFGLGKY  138 (199)
T ss_pred             HHHHHHHCCeecCCCCcceEEEE--CCcEEEEECCCCcC
Confidence            99999999999999999999998  68899999999854

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.64  E-value=1.6e-15  Score=173.19  Aligned_cols=135  Identities=17%  Similarity=0.092  Sum_probs=106.8

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEE-cc----h-----hhHHHHHHHHHHHHHHhhccCCCC
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQL-IS----V-----QAQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i-~~----~-----~~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      ..|...+.||+|+||    +||+|.+..       ..+++|+. .+    .     ...+...+|+++++.++      |
T Consensus       333 ~~~~~~~~iG~G~~g----~Vy~~~~~~-------~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~------~  395 (535)
T PRK09605        333 RRKIPDHLIGKGAEA----DIKKGEYLG-------RDAVIKERVPKGYRHPELDERLRTERTRAEARLLSEAR------R  395 (535)
T ss_pred             cccCccceeccCCcE----EEEEEeecC-------ccceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhc------c
Confidence            445678999999999    999998764       23344432 11    1     11234688999999995      9


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      ++|+..+.+..     .....++||| |+++++|.+++..                                     ...
T Consensus       396 ~~i~~p~~~~~-----~~~~~~lv~E-~~~g~~L~~~l~~-------------------------------------~~~  432 (535)
T PRK09605        396 AGVPTPVIYDV-----DPEEKTIVME-YIGGKDLKDVLEG-------------------------------------NPE  432 (535)
T ss_pred             cCCCeeEEEEE-----eCCCCEEEEE-ecCCCcHHHHHHH-------------------------------------HHH
Confidence            99988777766     4456789999 9999999998762                                     245


Q ss_pred             HHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccc
Q 005958          236 LMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADF  282 (667)
Q Consensus       236 i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~  282 (667)
                      ++.|++.+|.|||++||+||||||+|||++  ++.++|+|||+|+..
T Consensus       433 ~~~~i~~~L~~lH~~giiHrDlkp~NILl~--~~~~~liDFGla~~~  477 (535)
T PRK09605        433 LVRKVGEIVAKLHKAGIVHGDLTTSNFIVR--DDRLYLIDFGLGKYS  477 (535)
T ss_pred             HHHHHHHHHHHHHhCCCccCCCChHHEEEE--CCcEEEEeCcccccC
Confidence            899999999999999999999999999994  689999999999653

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.58  E-value=1.3e-14  Score=142.18  Aligned_cols=137  Identities=17%  Similarity=0.138  Sum_probs=96.9

Q ss_pred             EeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-----HHH---------------------HHHHHHHH
Q 005958           91 LDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-----QRR---------------------GRRAIEVL  144 (667)
Q Consensus        91 ~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-----~~~---------------------~~rEi~iL  144 (667)
                      .+.||+|+||    .||+|.+.      +++.||||++.....     ...                     ...|.+.+
T Consensus         2 ~~~lg~G~~g----~Vy~a~~~------~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l   71 (187)
T cd05119           2 GGPIGTGKEA----DVYLALDG------DGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNL   71 (187)
T ss_pred             Ccccccccce----eEEEEECC------CCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHH
Confidence            4689999999    99999876      478999999875211     111                     13567777


Q ss_pred             HHHhhccCCCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHH-HHhcCCCcccccccCCCHHHHhhcCCCCCCC
Q 005958          145 KKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHW-LQQADWLPTLEATLALDEESVRKVGDDSIGG  223 (667)
Q Consensus       145 ~~L~~~~~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~-i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~  223 (667)
                      ..+..    .+-.+.+.+++         ...++||| |++++++... +....          ..              
T Consensus        72 ~~l~~----~~~~~~~~~~~---------~~~~lv~e-~~~g~~~~~~~l~~~~----------~~--------------  113 (187)
T cd05119          72 KRLYE----AGVPVPKPIDL---------NRHVLVME-FIGGDGIPAPRLKDVR----------LL--------------  113 (187)
T ss_pred             HHHHH----cCCCCCceEec---------CCCEEEEE-EeCCCCccChhhhhhh----------hc--------------
Confidence            77741    11234444433         23589999 9998553211 11100          00              


Q ss_pred             CCccccHHHHHHHHHHHHHHHHHHHH-CCCcccCCCCCcEEEcCCCCeEEEeeecccccccC
Q 005958          224 PAASRQLRLIRLLMRDLLIGVNYLHS-HGLAHTELRLENVHISPVDRHIKVGILGNAADFYE  284 (667)
Q Consensus       224 ~~~~~~~~~i~~i~~QIl~aL~yLHs-~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~  284 (667)
                             ..++.++.+++.++.++|. +||+||||||+||+++  ++.++|+|||.|.....
T Consensus       114 -------~~~~~~~~~~~~~l~~lh~~~~ivH~Dl~p~Nili~--~~~~~liDfg~a~~~~~  166 (187)
T cd05119         114 -------EDPEELYDQILELMRKLYREAGLVHGDLSEYNILVD--DGKVYIIDVPQAVEIDH  166 (187)
T ss_pred             -------ccHHHHHHHHHHHHHHHhhccCcCcCCCChhhEEEE--CCcEEEEECcccccccC
Confidence                   2357799999999999999 9999999999999999  68999999999965544

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.58  E-value=3.2e-14  Score=145.89  Aligned_cols=137  Identities=15%  Similarity=0.066  Sum_probs=99.9

Q ss_pred             eEec-cCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---------------hHHHHHHHHHHHHHHhhccCCCC
Q 005958           92 DRVS-IGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---------------AQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        92 ~~LG-~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---------------~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      ..|| .|+.|    +||.+...       +..+|||.+....               ......+|++++.+|.      |
T Consensus        37 ~~lg~~~g~g----tv~~v~~~-------~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~------~   99 (239)
T PRK01723         37 RVVGSAKGRG----TTWFVQTP-------GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLY------E   99 (239)
T ss_pred             ceeecCCCCc----cEEEEEeC-------CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHH------h
Confidence            3455 66677    88888764       5779999875311               1234688999999996      6


Q ss_pred             Ccc--eEEEEEEEecccCCCCeEEEEEccCCCC-CCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHH
Q 005958          156 SYS--MQVHGYVSSHTTSGRSLFTLVHGQYHGS-FSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRL  232 (667)
Q Consensus       156 pnI--v~l~~~~~~~~~~~~~~~~lVmE~~~~~-GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~  232 (667)
                      ++|  ++.+++..... ......++||| +++| .+|.+++...          .+++                      
T Consensus       100 ~gi~vP~pl~~~~~~~-~~~~~~~lV~e-~l~G~~~L~~~l~~~----------~l~~----------------------  145 (239)
T PRK01723        100 AGLPVPRPIAARVVRH-GLFYRADILIE-RIEGARDLVALLQEA----------PLSE----------------------  145 (239)
T ss_pred             CCCCCceeEeeeeeec-CcceeeeEEEE-ecCCCCCHHHHHhcC----------CCCH----------------------
Confidence            664  67777654220 01123369999 8886 6999988642          2332                      


Q ss_pred             HHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccc
Q 005958          233 IRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADF  282 (667)
Q Consensus       233 i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~  282 (667)
                        ..+.||+.+|.+||++||+||||||+|||++. ++.++|+|||.+...
T Consensus       146 --~~~~~i~~~l~~lH~~GI~HrDlkp~NILv~~-~~~v~LIDfg~~~~~  192 (239)
T PRK01723        146 --EQWQAIGQLIARFHDAGVYHADLNAHNILLDP-DGKFWLIDFDRGELR  192 (239)
T ss_pred             --HHHHHHHHHHHHHHHCCCCCCCCCchhEEEcC-CCCEEEEECCCcccC
Confidence              14678999999999999999999999999998 789999999998553

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.54  E-value=4.2e-14  Score=131.20  Aligned_cols=132  Identities=17%  Similarity=0.088  Sum_probs=108.0

Q ss_pred             EEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCC-CcceEEEEEEEec
Q 005958           90 ILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYH-SYSMQVHGYVSSH  168 (667)
Q Consensus        90 i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~H-pnIv~l~~~~~~~  168 (667)
                      +.+.||.|.++    .||++....       ..+++|..........+.+|+.+++.++     .+ .++.+++.++.  
T Consensus         2 ~~~~i~~g~~~----~v~~~~~~~-------~~~~iK~~~~~~~~~~~~~e~~~~~~l~-----~~~~~~p~~~~~~~--   63 (155)
T cd05120           2 SIKLLKGGLTN----RVYLLGTKD-------EDYVLKINPSREKGADREREVAILQLLA-----RKGLPVPKVLASGE--   63 (155)
T ss_pred             cceeccccccc----ceEEEEecC-------CeEEEEecCCCCchhHHHHHHHHHHHHH-----HcCCCCCeEEEEcC--
Confidence            45789999999    999999753       6799999876433456789999999997     23 68888888877  


Q ss_pred             ccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 005958          169 TTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLH  248 (667)
Q Consensus       169 ~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLH  248 (667)
                         ..+..+++|| |++++.+..+  .                                  ......++.+++.+|.+||
T Consensus        64 ---~~~~~~~v~e-~~~g~~~~~~--~----------------------------------~~~~~~~~~~~~~~l~~lh  103 (155)
T cd05120          64 ---SDGWSYLLME-WIEGETLDEV--S----------------------------------EEEKEDIAEQLAELLAKLH  103 (155)
T ss_pred             ---CCCccEEEEE-ecCCeecccC--C----------------------------------HHHHHHHHHHHHHHHHHHh
Confidence               5578999999 9988666543  0                                  1234568899999999999


Q ss_pred             HC---CCcccCCCCCcEEEcCCCCeEEEeeecccc
Q 005958          249 SH---GLAHTELRLENVHISPVDRHIKVGILGNAA  280 (667)
Q Consensus       249 s~---gIvHrDLKPeNILl~~~~~~vKL~DFGlA~  280 (667)
                      ..   +++|+|++|+||+++. .+.++++|||.+.
T Consensus       104 ~~~~~~i~H~Dl~~~Nil~~~-~~~~~l~Df~~~~  137 (155)
T cd05120         104 QLPLLVLCHGDLHPGNILVDD-GKILGIIDWEYAG  137 (155)
T ss_pred             CCCceEEEecCCCcceEEEEC-CcEEEEEeccccc
Confidence            85   7999999999999998 7999999999884

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.49  E-value=6.1e-14  Score=154.99  Aligned_cols=249  Identities=17%  Similarity=0.183  Sum_probs=191.1

Q ss_pred             cccccCCeEEEeEecc--CCCCCCCceEEEEEE--cCCCCCCCCcEEEEEEEcc----hhhHHHHHHHHHHHHHHhhccC
Q 005958           81 IRFNMGDFKILDRVSI--GLSGRADEVVFEAIV--KDSNSPLHNTKVVLRQLIS----VQAQRRGRRAIEVLKKLVRRRL  152 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~--G~fG~~~~~Vy~a~~--~~~~~~~tg~~vAvK~i~~----~~~~~~~~rEi~iL~~L~~~~~  152 (667)
                      ..+.-..+.+...+|.  |.+|    .||.+..  ..     ++..+|+|.-+.    ......-.+|+...+++.    
T Consensus       109 ~s~~~~~~~~~~~~g~~~g~~~----s~~~~~~~~~~-----s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~----  175 (524)
T KOG0601|consen  109 DSFFDQRFPISSRTGSLPGSKG----SVFKSRCTNSE-----SPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKID----  175 (524)
T ss_pred             cchhhhhcccccccccCCCCCc----eeecccCCccc-----CCcccccccccCCCCCccccccccchhhcccccC----
Confidence            3455567888999999  9999    9999988  55     789999998432    233344578888888887    


Q ss_pred             CCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHH
Q 005958          153 MYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRL  232 (667)
Q Consensus       153 ~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~  232 (667)
                       .|+|.++.+..++     +.+..|+-+| +|+. +|.++.....+        .+.                    ...
T Consensus       176 -~~~~~v~~~~~~e-----~~~~lfiqtE-~~~~-sl~~~~~~~~~--------~~p--------------------~~~  219 (524)
T KOG0601|consen  176 -SHENPVRDSPAWE-----GSGILFIQTE-LCGE-SLQSYCHTPCN--------FLP--------------------DNL  219 (524)
T ss_pred             -ccccccccCcccc-----cCCcceeeec-cccc-hhHHhhhcccc--------cCC--------------------chh
Confidence             6999999999888     8899999999 9997 99998876431        122                    245


Q ss_pred             HHHHHHHHHH----HHHHHHHCCCcccCCCCCcEEEcCCC-CeEEEeeecccccccCCC--------------CCCCCcc
Q 005958          233 IRLLMRDLLI----GVNYLHSHGLAHTELRLENVHISPVD-RHIKVGILGNAADFYEDG--------------PNNSSPD  293 (667)
Q Consensus       233 i~~i~~QIl~----aL~yLHs~gIvHrDLKPeNILl~~~~-~~vKL~DFGlA~~~~~~~--------------~~Y~APE  293 (667)
                      ++.++.+...    ||.++|+.+|+|-|+||+||++.. + ...+++|||+...+..+.              ..|++||
T Consensus       220 l~~~~~~~~~~~~~al~~~hs~~~~~~~~kp~~i~~~~-~~~s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke  298 (524)
T KOG0601|consen  220 LWNSLRDWLSRDVTALSHLHSNNIVHDDLKPANIFTTS-DWTSCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKE  298 (524)
T ss_pred             hhhHHhhhhhcccccccccCCCcccccccchhheeccc-ccceeecCCcceeEEccCCccccceeeeecCCCCceEeChh
Confidence            7888888888    999999999999999999999998 6 889999999887665443              6799999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccC--CChhHHHHHHHHHhccCCCCCCCCcccccCCCH
Q 005958          294 SNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKG--IDPSCLREFLLQVLNRNSSSGNTGFQILDRNWG  371 (667)
Q Consensus       294 ~l~~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~  371 (667)
                      +.  +.-++...||+|+|.++.+-.++..++.           .|  ....+++...            ...+.....+.
T Consensus       299 ~~--~~l~~~~~di~sl~ev~l~~~l~~~~~~-----------~g~~~~W~~~r~~~------------ip~e~~~~~s~  353 (524)
T KOG0601|consen  299 LL--NGLATFASDIFSLGEVILEAILGSHLPS-----------VGKNSSWSQLRQGY------------IPLEFCEGGSS  353 (524)
T ss_pred             hh--ccccchHhhhcchhhhhHhhHhhccccc-----------CCCCCCcccccccc------------CchhhhcCcch
Confidence            44  4458999999999999999999876543           11  0001111100            01112223455


Q ss_pred             HHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          372 AGWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       372 e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      ++...+.+|+..||-.|++++.+++|+++....
T Consensus       354 ~l~~~~~~~~d~~~~~~~~~q~~~~l~~i~s~~  386 (524)
T KOG0601|consen  354 SLRSVTSQMLDEDPRLRLTAQILTALNVIHSKL  386 (524)
T ss_pred             hhhhHHHHhcCcchhhhhHHHHHhccccccchh
Confidence            667799999999999999999999999998543

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.48  E-value=1.7e-14  Score=166.39  Aligned_cols=259  Identities=18%  Similarity=0.164  Sum_probs=185.5

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCC
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      .+...+.+.+.+-+-+|+++    .++.+.-..     ++...++|......     ..+...++-.++-.-      .|
T Consensus       799 yrsS~d~~~i~~p~qS~sp~----ss~p~~pa~-----sgh~~~~~v~~~ap~i~~~~~~s~r~~s~~~i~p------~~  863 (1205)
T KOG0606|consen  799 YRSSPDGFEITKPSQSGSPS----SSFPASPAG-----SGHTRPSKVHGLAPKIRTNDYESIRSKSNILITP------RS  863 (1205)
T ss_pred             ccCCCccceecccccCCCCc----ccccCCccc-----cccccchhhhccchhhccccccccCCccCccccC------CC
Confidence            56678999999999999999    888887776     56666666654321     112222222222211      24


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      |.++...-.+.     -....+++|+ |.++|+|...++..+         ..+++                    -.+.
T Consensus       864 P~v~~~~~s~~-----~rsP~~L~~~-~~~~~~~~Skl~~~~---------~~sae--------------------paRs  908 (1205)
T KOG0606|consen  864 PAVVRSFPSFP-----CRSPLPLVGH-YLNGGDLPSKLHNSG---------CLSAE--------------------PARS  908 (1205)
T ss_pred             CceecccCCCC-----CCCCcchhhH-HhccCCchhhhhcCC---------Ccccc--------------------cccc
Confidence            66555444433     5678999999 999999999998754         33432                    2466


Q ss_pred             HHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-------------------------------
Q 005958          236 LMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-------------------------------  284 (667)
Q Consensus       236 i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-------------------------------  284 (667)
                      +...+..+++|||+..+.|||++|.|+|+.. +++.+++|||.......                               
T Consensus       909 ~i~~~vqs~e~L~s~~r~h~~~~p~~~l~~~-~gh~~l~~~~t~~~vg~~~p~~~~sg~~~~~~~~~~~~~~~~~~l~~~  987 (1205)
T KOG0606|consen  909 PILERVQSLESLHSSLRKHRDLKPDSLLIAY-DGHRPLTDFGTLSKVGLIPPTTDLSGPSSSGTPRRLSRSERRPQLSAD  987 (1205)
T ss_pred             hhHHHHhhhhccccchhhcccccccchhhcc-cCCcccCccccccccccccCcCCcccccccCccccccccccccccccc
Confidence            8889999999999999999999999999998 99999999984321110                               


Q ss_pred             ---------CCCCCCCcccccCCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccC
Q 005958          285 ---------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRN  355 (667)
Q Consensus       285 ---------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~  355 (667)
                               +.+.|.+||.+++.. .+..+|+|++|++++|.++|.+||...            .+++   .+.++....
T Consensus       988 ~~~~~~~~~~t~~~laPe~~lg~~-hgs~ad~~~~g~~l~e~l~g~pp~na~------------tpq~---~f~ni~~~~ 1051 (1205)
T KOG0606|consen  988 EARRKHAVVGTPDYLAPEILLGRR-HGSAADWWSSGVCLFEVLTGIPPFNAE------------TPQQ---IFENILNRD 1051 (1205)
T ss_pred             hhhccccccCCCcccCCccccccc-CCCcchhhhhhhhhhhhhcCCCCCCCc------------chhh---hhhccccCC
Confidence                     015688999666554 688999999999999999999998521            1211   122222222


Q ss_pred             CCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHH---HHHcCCCCCCCCCCCCCc
Q 005958          356 SSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCL---DALRHPFLCGPRWRVDPS  410 (667)
Q Consensus       356 ~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~---elL~HPwf~~~~~~~~~~  410 (667)
                      .+.    .......++++++++..+|..+|.+|..+.   ++-.||||++..|.....
T Consensus      1052 ~~~----p~g~~~~s~~aq~~~~~ll~~~~~qr~~a~~~~e~k~~~~~~~~~~~~l~~ 1105 (1205)
T KOG0606|consen 1052 IPW----PEGPEEGSYEAQDLINRLLTEEPTQRLGAKGAAEVKGHPFFQDVDWENLAL 1105 (1205)
T ss_pred             CCC----CCCccccChhhhhhhhhhhccCchhccCcccccccccCCccCCCCcccccc
Confidence            111    112335678999999999999999999987   899999999999977664

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.39  E-value=4e-13  Score=138.18  Aligned_cols=199  Identities=20%  Similarity=0.251  Sum_probs=142.6

Q ss_pred             CCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHH
Q 005958          154 YHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLI  233 (667)
Q Consensus       154 ~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i  233 (667)
                      .|.|||+++.||.+....+.....+++| |+..|+|.++|++..+.                         +..+.....
T Consensus       125 vHsnlvkfH~yw~d~K~~e~~rviFite-ymssgs~~~fLkrt~~~-------------------------~~a~~~~~w  178 (458)
T KOG1266|consen  125 VHSNLVKFHKYWTDKKYEEKPRVIFITE-YMSSGSLKQFLKRTKKN-------------------------QKALFQKAW  178 (458)
T ss_pred             HHHHHHHHHHhhcccccccccceEEEEe-cccchhHHHHHHHHHHh-------------------------hhhhhHHHH
Confidence            4999999999998777667778999999 99999999999875321                         112334567


Q ss_pred             HHHHHHHHHHHHHHHHCC--CcccCCCCCcEEEcCCCCeEEEeeecccc-------------cccCCCCCCCCcccccCC
Q 005958          234 RLLMRDLLIGVNYLHSHG--LAHTELRLENVHISPVDRHIKVGILGNAA-------------DFYEDGPNNSSPDSNMDR  298 (667)
Q Consensus       234 ~~i~~QIl~aL~yLHs~g--IvHrDLKPeNILl~~~~~~vKL~DFGlA~-------------~~~~~~~~Y~APE~l~~~  298 (667)
                      +.|+.||+.||.|||+..  |+|+++..+-|++.. +|-+||+----..             ....+.+.|.||| .-..
T Consensus       179 kkw~tqIlsal~yLhs~~PpiihgnlTc~tifiq~-ngLIkig~~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~-sg~~  256 (458)
T KOG1266|consen  179 KKWCTQILSALSYLHSCDPPIIHGNLTCDTIFIQH-NGLIKIGSVAPDSTHPSVNSTREAEKSVNTSLPGFSAPE-SGTT  256 (458)
T ss_pred             HHHHHHHHhhhhhhhccCCccccCCcchhheeecC-CceEEecccCccccchhhhhhhHhhhhccccCCccccCC-cCcc
Confidence            889999999999999975  999999999999997 8888875321110             0111237888998 3333


Q ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHH
Q 005958          299 RQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLS  378 (667)
Q Consensus       299 ~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~  378 (667)
                      ...+.++|||++|....||..+..--           ..+.......+.+.+....             -..+.-++++.
T Consensus       257 tn~~~a~dIy~fgmcAlemailEiq~-----------tnseS~~~~ee~ia~~i~~-------------len~lqr~~i~  312 (458)
T KOG1266|consen  257 TNTTGASDIYKFGMCALEMAILEIQS-----------TNSESKVEVEENIANVIIG-------------LENGLQRGSIT  312 (458)
T ss_pred             cccccchhhhhhhHHHHHHHHheecc-----------CCCcceeehhhhhhhheee-------------ccCccccCcCc
Confidence            34567899999999999999886311           1122221222222221111             01123368999


Q ss_pred             HhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          379 LLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       379 ~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      +||+..|..||++.++|.||.+-++.
T Consensus       313 kcl~~eP~~rp~ar~llfHpllfeVh  338 (458)
T KOG1266|consen  313 KCLEGEPNGRPDARLLLFHPLLFEVH  338 (458)
T ss_pred             ccccCCCCCCcchhhhhcCceeeecc
Confidence            99999999999999999999987654

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.34  E-value=6.2e-12  Score=139.89  Aligned_cols=142  Identities=16%  Similarity=0.112  Sum_probs=96.9

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHH-----------------------------------
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRR-----------------------------------  136 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~-----------------------------------  136 (667)
                      +.||.|++|    .||+|+.+      +|+.||||+.++.- .+.                                   
T Consensus       123 ~plasaSig----QVh~A~l~------~G~~VaVKv~rp~i-~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~  191 (437)
T TIGR01982       123 KPLAAASIA----QVHRARLV------DGKEVAVKVLRPGI-EKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFE  191 (437)
T ss_pred             cceeeeehh----heEEEEec------CCCEEEEEeeCCCc-HHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHH
Confidence            679999999    99999987      58999999987521 111                                   


Q ss_pred             --------HHHHHHHHHHHhhccCCCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCC
Q 005958          137 --------GRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLAL  208 (667)
Q Consensus       137 --------~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l  208 (667)
                              +.+|...+.++++  .+.|.+-+.+-.++..    ..+..+|||| |++|++|.++......        .+
T Consensus       192 ~~l~~Eldf~~Ea~n~~~~~~--~~~~~~~v~vP~v~~~----~~~~~vLvmE-~i~G~~L~~~~~~~~~--------~~  256 (437)
T TIGR01982       192 KTLRRELDLRREAANASELGE--NFKNDPGVYVPEVYWD----RTSERVLTME-WIDGIPLSDIAALDEA--------GL  256 (437)
T ss_pred             HHHHHHHCHHHHHHHHHHHHH--hcCCCCCEEeCCEehh----hcCCceEEEE-eECCcccccHHHHHhc--------CC
Confidence                    1344444555431  1123333333333321    2345699999 9999999887653210        11


Q ss_pred             CHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH-HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeeccccccc
Q 005958          209 DEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI-GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFY  283 (667)
Q Consensus       209 ~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~-aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~  283 (667)
                      +                       ...++.+++. .+..+|..|++|+|+||.||+++. ++.++|+|||++..+.
T Consensus       257 ~-----------------------~~~ia~~~~~~~l~ql~~~g~~H~D~hPgNilv~~-~g~i~liDfG~~~~l~  308 (437)
T TIGR01982       257 D-----------------------RKALAENLARSFLNQVLRDGFFHADLHPGNIFVLK-DGKIIALDFGIVGRLS  308 (437)
T ss_pred             C-----------------------HHHHHHHHHHHHHHHHHhCCceeCCCCcccEEECC-CCcEEEEeCCCeeECC
Confidence            1                       1235555555 467889999999999999999988 8999999999987654

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.30  E-value=4.7e-12  Score=142.99  Aligned_cols=152  Identities=17%  Similarity=0.137  Sum_probs=102.7

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-------------------------------
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-------------------------------  133 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-------------------------------  133 (667)
                      ...|+. +.||.|++|    .||+|+.+.     +|+.||||++++.-.                               
T Consensus       119 F~~fd~-~PlasaSia----QVh~A~l~~-----~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~  188 (537)
T PRK04750        119 FDDFDI-KPLASASIA----QVHFARLKD-----NGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPRE  188 (537)
T ss_pred             HHhcCh-hhhcCCCcc----EEEEEEECC-----CCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHH
Confidence            456777 899999999    999999986     699999999975310                               


Q ss_pred             -----HHHH------HHHHHHHHHHhhccCCCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHH--HhcCCCc
Q 005958          134 -----QRRG------RRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWL--QQADWLP  200 (667)
Q Consensus       134 -----~~~~------~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i--~~~~~~~  200 (667)
                           .+.+      .+|...+.+++  .++.+.+.+.+-.+|.    +-....+|||| |++|+.|.++-  ...+   
T Consensus       189 ~v~e~~~~l~~ElD~~~Ea~N~~~~~--~~f~~~~~v~VP~v~~----d~st~~VLvmE-~i~G~~l~d~~~l~~~g---  258 (537)
T PRK04750        189 VVAEFEKTLHDELDLMREAANASQLR--RNFEDSDMLYVPEVYW----DYCSETVMVME-RMYGIPVSDVAALRAAG---  258 (537)
T ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHH--HHccCCCCeecceeec----ccCCCceEEEe-eecCccHHhHHHHHhcC---
Confidence                 1112      33444444443  1223444455555554    12456899999 99999998752  2221   


Q ss_pred             ccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCC----eEEEeee
Q 005958          201 TLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDR----HIKVGIL  276 (667)
Q Consensus       201 ~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~----~vKL~DF  276 (667)
                             .+...               +....+..++.|++       ..|++|+|+||.||+++. ++    .++++||
T Consensus       259 -------~d~~~---------------la~~~v~~~~~Qif-------~~GffHaDpHPGNIlv~~-~g~~~~~i~llDF  308 (537)
T PRK04750        259 -------TDMKL---------------LAERGVEVFFTQVF-------RDGFFHADMHPGNIFVSY-DPPENPRYIALDF  308 (537)
T ss_pred             -------CCHHH---------------HHHHHHHHHHHHHH-------hCCeeeCCCChHHeEEec-CCCCCCeEEEEec
Confidence                   11111               11234556666665       599999999999999998 66    9999999


Q ss_pred             cccccccCCC
Q 005958          277 GNAADFYEDG  286 (667)
Q Consensus       277 GlA~~~~~~~  286 (667)
                      |++..+....
T Consensus       309 Givg~l~~~~  318 (537)
T PRK04750        309 GIVGSLNKED  318 (537)
T ss_pred             ceEEECCHHH
Confidence            9998776543

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.29  E-value=2.1e-12  Score=142.85  Aligned_cols=247  Identities=14%  Similarity=0.086  Sum_probs=183.5

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcc----hhhHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS----VQAQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~----~~~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      ....+|..+..||.|.|+    .|+.+.....    .+..|++|.+..    ...+.....|+.+...+.     .|.++
T Consensus       262 ~~~~df~~v~~i~~~~~~----~~~~~~~r~~----~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~-----~~~~~  328 (524)
T KOG0601|consen  262 CKLTDFGLVSKISDGNFS----SVFKVSKRPE----GDCIYAAKELLNGLATFASDIFSLGEVILEAILG-----SHLPS  328 (524)
T ss_pred             eecCCcceeEEccCCccc----cceeeeecCC----CCceEeChhhhccccchHhhhcchhhhhHhhHhh-----ccccc
Confidence            345789999999999999    8888774422    688999998764    223334478888888886     69999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      +.++..|.     .....||-.| ||.++++...+.-.         +.++|.                    -.+.+..
T Consensus       329 ~g~~~~W~-----~~r~~~ip~e-~~~~~s~~l~~~~~---------~~~d~~--------------------~~~~~~~  373 (524)
T KOG0601|consen  329 VGKNSSWS-----QLRQGYIPLE-FCEGGSSSLRSVTS---------QMLDED--------------------PRLRLTA  373 (524)
T ss_pred             CCCCCCcc-----ccccccCchh-hhcCcchhhhhHHH---------HhcCcc--------------------hhhhhHH
Confidence            99888887     6667779999 99998888776332         144443                    3567999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-------CCCCCCcccccCCCCCCchhhHHHHH
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-------GPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-------~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      |++.++.++|+..++|+|+||+||++...++..+++|||.+..+...       ...|-.+|+++....+..++|++|||
T Consensus       374 q~~~~l~~i~s~~~~~~d~~psni~i~~~~~~~~~~~~~~~t~~~~~~~~~~~~~r~~p~~~~~~e~~~~~~~~~~~sl~  453 (524)
T KOG0601|consen  374 QILTALNVIHSKLFVHLDVKPSNILISNDGFFSKLGDFGCWTRLAFSSGVFHHIDRLYPIAEILLEDYPHLSKADIFSLG  453 (524)
T ss_pred             HHHhccccccchhhhcccccccceeeccchhhhhccccccccccceecccccccccccccchhhcccccccccccccccc
Confidence            99999999999999999999999999974488999999998643221       13342366577788889999999999


Q ss_pred             HHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH
Q 005958          312 FMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC  391 (667)
Q Consensus       312 viLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa  391 (667)
                      ..+++.+++.+.-+...+...              .           .....+..+....++..+.+.++..|+..|+.+
T Consensus       454 ~~~~e~~~~~~ls~~~~~~~~--------------i-----------~~~~~p~~~~~~~~~q~~~kv~~~~~~~~~~l~  508 (524)
T KOG0601|consen  454 LSVDEAITGSPLSESGVQSLT--------------I-----------RSGDTPNLPGLKLQLQVLLKVMINPDRKRRPSA  508 (524)
T ss_pred             ccccccccCcccCccccccee--------------e-----------ecccccCCCchHHhhhhhhhhhcCCccccchhh
Confidence            999999999864321111111              0           011122333444678899999999999999999


Q ss_pred             HHHHcCCCCCC
Q 005958          392 LDALRHPFLCG  402 (667)
Q Consensus       392 ~elL~HPwf~~  402 (667)
                      .++..|.=|..
T Consensus       509 ~~l~~~~~~~~  519 (524)
T KOG0601|consen  509 VELSLHSEFYR  519 (524)
T ss_pred             hhhcccchhhh
Confidence            99998876644

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.28  E-value=2.9e-11  Score=116.12  Aligned_cols=127  Identities=15%  Similarity=0.054  Sum_probs=94.4

Q ss_pred             EeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEecc
Q 005958           91 LDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHT  169 (667)
Q Consensus        91 ~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~  169 (667)
                      ++.|+.|.++    .||+++..       ++.|++|+..... ......+|+.+++.+.+     ...+.+++....   
T Consensus         3 ~~~l~~G~~~----~vy~~~~~-------~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~~-----~~~~P~~~~~~~---   63 (170)
T cd05151           3 ISPLKGGMTN----KNYRVEVA-------NKKYVVRIPGNGTELLINRENEAENSKLAAE-----AGIGPKLYYFDP---   63 (170)
T ss_pred             eeecCCcccC----ceEEEEEC-------CeEEEEEeCCCCcccccCHHHHHHHHHHHHH-----hCCCCceEEEeC---
Confidence            4678999999    99999864       5789999976543 12345789999999962     222445555432   


Q ss_pred             cCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHH
Q 005958          170 TSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHS  249 (667)
Q Consensus       170 ~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs  249 (667)
                          ...++||| |++|.++.+. .             .                       ....++.+++.+|..||+
T Consensus        64 ----~~~~lv~e-~i~G~~l~~~-~-------------~-----------------------~~~~~~~~l~~~l~~LH~  101 (170)
T cd05151          64 ----ETGVLITE-FIEGSELLTE-D-------------F-----------------------SDPENLEKIAKLLKKLHS  101 (170)
T ss_pred             ----CCCeEEEE-ecCCCccccc-c-------------c-----------------------cCHHHHHHHHHHHHHHhC
Confidence                23479999 9999776542 0             0                       012367899999999999


Q ss_pred             CCC-----cccCCCCCcEEEcCCCCeEEEeeecccc
Q 005958          250 HGL-----AHTELRLENVHISPVDRHIKVGILGNAA  280 (667)
Q Consensus       250 ~gI-----vHrDLKPeNILl~~~~~~vKL~DFGlA~  280 (667)
                      .++     +|+|++|.||+++  ++.++++|||.|.
T Consensus       102 ~~~~~~~~~HgD~~~~Nil~~--~~~~~liDf~~a~  135 (170)
T cd05151         102 SPLPDLVPCHNDLLPGNFLLD--DGRLWLIDWEYAG  135 (170)
T ss_pred             CCCCCceeecCCCCcCcEEEE--CCeEEEEeccccc
Confidence            985     9999999999999  4689999999873

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.20  E-value=2.7e-10  Score=127.48  Aligned_cols=173  Identities=14%  Similarity=0.185  Sum_probs=130.1

Q ss_pred             eEEEeEeccCCCCCCCceEE-EEEEcCCCCCCCCcEEEEEEEcchhh--HHHHHHHHHHHHHHhhccCCCCCcceEEEEE
Q 005958           88 FKILDRVSIGLSGRADEVVF-EAIVKDSNSPLHNTKVVLRQLISVQA--QRRGRRAIEVLKKLVRRRLMYHSYSMQVHGY  164 (667)
Q Consensus        88 y~i~~~LG~G~fG~~~~~Vy-~a~~~~~~~~~tg~~vAvK~i~~~~~--~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~  164 (667)
                      |.+ ...+-++.+     || .|..+.     ++.+|.|...+....  ...+.+.++-|+.++      ||||+++++.
T Consensus        15 Y~l-e~~~~~~~a-----~~~~~t~k~-----~~~~vsVF~~~~~~~~~~~~~~~A~k~lKtlR------HP~Il~yL~t   77 (690)
T KOG1243|consen   15 YDL-EETAFSSEA-----LWPDGTRKA-----DGGPVSVFVYKRSNGEVTELAKRAVKRLKTLR------HPNILSYLDT   77 (690)
T ss_pred             ccc-ccccCCCcc-----cccccceec-----cCCceEEEEEeCCCchhhHHHHHHHHHhhhcc------Cchhhhhhhh
Confidence            444 444444444     55 355565     789999998876544  344677888888886      9999999999


Q ss_pred             EEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHH
Q 005958          165 VSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGV  244 (667)
Q Consensus       165 ~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL  244 (667)
                      ++     ..+.+|||+| -+.  -|..++++.+            +                    ..+..-+.||+.||
T Consensus        78 ~e-----~~~~~ylvTE-rV~--Pl~~~lk~l~------------~--------------------~~v~~Gl~qIl~AL  117 (690)
T KOG1243|consen   78 TE-----EEGTLYLVTE-RVR--PLETVLKELG------------K--------------------EEVCLGLFQILAAL  117 (690)
T ss_pred             hc-----ccCceEEEee-ccc--cHHHHHHHhH------------H--------------------HHHHHHHHHHHHHH
Confidence            98     7789999999 665  4777777532            1                    34677899999999


Q ss_pred             HHHH-HCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC---------CCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          245 NYLH-SHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG---------PNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       245 ~yLH-s~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~---------~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      .||| ..+++|++|.-.-|+++. .|..||++|-++.......         -.|..|+.+-.   -.-..|.|-|||++
T Consensus       118 ~FL~~d~~lvHgNv~~~SVfVn~-~GeWkLggle~v~~~~~~~~~~~~~~~~~s~~~P~~~~~---s~~s~D~~~Lg~li  193 (690)
T KOG1243|consen  118 SFLNDDCNLVHGNVCKDSVFVNE-SGEWKLGGLELVSKASGFNAPAKSLYLIESFDDPEEIDP---SEWSIDSWGLGCLI  193 (690)
T ss_pred             HHHhccCCeeeccEeeeeEEEcC-CCcEEEeeeEEEeccccCCcccccchhhhcccChhhcCc---cccchhhhhHHHHH
Confidence            9997 568999999999999999 9999999999886554433         12445552211   11357999999999


Q ss_pred             HHHHhCC
Q 005958          315 AKMVLRE  321 (667)
Q Consensus       315 yemltG~  321 (667)
                      +|++.|.
T Consensus       194 ~el~ng~  200 (690)
T KOG1243|consen  194 EELFNGS  200 (690)
T ss_pred             HHHhCcc
Confidence            9999993

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.19  E-value=2.1e-10  Score=113.69  Aligned_cols=144  Identities=15%  Similarity=0.144  Sum_probs=98.9

Q ss_pred             EeEeccCCCCCCCceEEEEEEcCCC-CCCCCcEEEEEEEcchh------------h------------HHH----HHHHH
Q 005958           91 LDRVSIGLSGRADEVVFEAIVKDSN-SPLHNTKVVLRQLISVQ------------A------------QRR----GRRAI  141 (667)
Q Consensus        91 ~~~LG~G~fG~~~~~Vy~a~~~~~~-~~~tg~~vAvK~i~~~~------------~------------~~~----~~rEi  141 (667)
                      ...||.|--+    .||.|...... ....+..+|||+.+...            .            ...    ..+|.
T Consensus         2 ~g~i~~GKEa----~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~   77 (197)
T cd05146           2 NGCISTGKES----VVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEM   77 (197)
T ss_pred             CCccccCcce----EEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHH
Confidence            3578999999    99999865310 01135789999887310            0            011    14899


Q ss_pred             HHHHHHhhccCCCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHH-HHHhcCCCcccccccCCCHHHHhhcCCCC
Q 005958          142 EVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRH-WLQQADWLPTLEATLALDEESVRKVGDDS  220 (667)
Q Consensus       142 ~iL~~L~~~~~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~-~i~~~~~~~~l~~~~~l~E~~a~~~~~~~  220 (667)
                      ..|+++...    .-++.+.+++         ..-+|||| |++++.+.. .++.          ..+++          
T Consensus        78 r~L~rl~~~----Gv~vP~pi~~---------~~~~lvME-~Ig~~~~~~~~Lkd----------~~~~~----------  123 (197)
T cd05146          78 HNLKRMQKA----GIPCPEVVVL---------KKHVLVMS-FIGDDQVPAPKLKD----------AKLND----------  123 (197)
T ss_pred             HHHHHHHHc----CCCCCeEEEe---------cCCEEEEE-EcCCCCccchhhhc----------cccCH----------
Confidence            999999632    2345555553         23688999 998754432 2221          12222          


Q ss_pred             CCCCCccccHHHHHHHHHHHHHHHHHH-HHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC
Q 005958          221 IGGPAASRQLRLIRLLMRDLLIGVNYL-HSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE  284 (667)
Q Consensus       221 ~~~~~~~~~~~~i~~i~~QIl~aL~yL-Hs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~  284 (667)
                                ..+..++.|++.+|..| |..||||+||++.|||+.  ++.+.|+|||.|.....
T Consensus       124 ----------~~~~~i~~~i~~~l~~l~H~~glVHGDLs~~NIL~~--~~~v~iIDF~qav~~~h  176 (197)
T cd05146         124 ----------EEMKNAYYQVLSMMKQLYKECNLVHADLSEYNMLWH--DGKVWFIDVSQSVEPTH  176 (197)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEE--CCcEEEEECCCceeCCC
Confidence                      23456789999999999 899999999999999998  47899999999976654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=99.04  E-value=6.5e-09  Score=113.35  Aligned_cols=228  Identities=17%  Similarity=0.155  Sum_probs=156.4

Q ss_pred             eEEEEEEcCCCCCCCCcEEEEEEEcchhh--HHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEecccCCCCeEEEEEcc
Q 005958          105 VVFEAIVKDSNSPLHNTKVVLRQLISVQA--QRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQ  182 (667)
Q Consensus       105 ~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~--~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~  182 (667)
                      +.|+|....     +|..|++|+++-.+.  ......-+++++++.      |+|||++.++|... ...+..+++|++|
T Consensus       291 Ttyk~~s~~-----DG~~YvLkRlhg~r~~~~nk~t~lve~wkkl~------h~NvV~frevf~t~-tF~D~SlvlvYDY  358 (655)
T KOG3741|consen  291 TTYKATSNV-----DGNAYVLKRLHGDRDQSTNKDTSLVEAWKKLC------HTNVVPFREVFLTY-TFGDLSLVLVYDY  358 (655)
T ss_pred             eeEeeeecc-----CCceeeeeeeccccccCcccchHHHHHHHHhc------cCceeehhhhhhhh-ccCcceEEEEEec
Confidence            899999998     899999999953322  122344578899994      99999999999733 2366789999996


Q ss_pred             CCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcE
Q 005958          183 YHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENV  262 (667)
Q Consensus       183 ~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNI  262 (667)
                      |-..++|.++--........              ............+...+|.|+.||..||.++|+.|+..+-|.|.+|
T Consensus       359 yP~s~TL~d~~F~~~~~t~~--------------~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHssGLAck~L~~~kI  424 (655)
T KOG3741|consen  359 YPSSPTLYDLYFANPPFTKR--------------TNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSSGLACKTLDLKKI  424 (655)
T ss_pred             CCCCchHHHHHccCCccccc--------------cccccccCCCCchHHHHHHHHHHHHHHHHHHHhcCceeecccHhHe
Confidence            66678998875432211100              0000011122345678999999999999999999999999999999


Q ss_pred             EEcCCCCeEEEeeecccccccCCCCCCCCcccccCCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChh
Q 005958          263 HISPVDRHIKVGILGNAADFYEDGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPS  342 (667)
Q Consensus       263 Ll~~~~~~vKL~DFGlA~~~~~~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~  342 (667)
                      |++. +.+++|..-|.......+.   .  |.+..    -.+-|.=.||.+++.|.+|..              .+....
T Consensus       425 lv~G-~~RIriS~C~i~Dvl~~d~---~--~~le~----~Qq~D~~~lG~ll~aLAt~~~--------------ns~~~d  480 (655)
T KOG3741|consen  425 LVTG-KMRIRISGCGIMDVLQEDP---T--EPLES----QQQNDLRDLGLLLLALATGTE--------------NSNRTD  480 (655)
T ss_pred             EeeC-cceEEEecccceeeecCCC---C--cchhH----HhhhhHHHHHHHHHHHhhccc--------------cccccc
Confidence            9997 5588887777665444332   1  21211    236799999999999999962              111111


Q ss_pred             HHHHH-HHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcC
Q 005958          343 CLREF-LLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRH  397 (667)
Q Consensus       343 ~l~~~-~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~H  397 (667)
                      ...+. +..              +.+.++.+++++|.-+...++++ -+..+++.|
T Consensus       481 ~~~~s~~~~--------------I~~~yS~D~rn~v~yl~s~~~~~-ksI~~llp~  521 (655)
T KOG3741|consen  481 STQSSHLTR--------------ITTTYSTDLRNVVEYLESLNFRE-KSIQDLLPM  521 (655)
T ss_pred             chHHHHHHH--------------hhhhhhHHHHHHHHHHHhcCccc-ccHHHHHHH
Confidence            11111 111              12346779999999999999987 788888865

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.02  E-value=3e-09  Score=102.98  Aligned_cols=128  Identities=21%  Similarity=0.202  Sum_probs=93.6

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEc-c----hhh-----HHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLI-S----VQA-----QRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~-~----~~~-----~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ..+++|+-+    .+|.+...       |..+++|.=. +    ...     .++..+|..++.+++.. .+   +...+
T Consensus         2 ~~i~~GAEa----~i~~~~~~-------g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~-GV---~~P~v   66 (204)
T COG3642           2 DLIKQGAEA----IIYLTDFL-------GLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREA-GV---PVPIV   66 (204)
T ss_pred             chhhCCcce----eEEeeecc-------CcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHc-CC---CCCeE
Confidence            357789888    89998664       3456666532 2    111     13348899999999632 22   23344


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      +++       +.+...|+|| |.+|-.|.+++....                                    -.+++.+-
T Consensus        67 ~dv-------D~~~~~I~me-~I~G~~lkd~l~~~~------------------------------------~~~~r~vG  102 (204)
T COG3642          67 YDV-------DPDNGLIVME-YIEGELLKDALEEAR------------------------------------PDLLREVG  102 (204)
T ss_pred             EEE-------cCCCCEEEEE-EeCChhHHHHHHhcc------------------------------------hHHHHHHH
Confidence            544       4466789999 999988888887641                                    12677777


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccc
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAA  280 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~  280 (667)
                      .-+.-||.+||+|+||.++||++..  +.+.++|||++.
T Consensus       103 ~~vg~lH~~givHGDLTtsNiIl~~--~~i~~IDfGLg~  139 (204)
T COG3642         103 RLVGKLHKAGIVHGDLTTSNIILSG--GRIYFIDFGLGE  139 (204)
T ss_pred             HHHHHHHhcCeecCCCccceEEEeC--CcEEEEECCccc
Confidence            7788899999999999999999995  569999999985

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.94  E-value=7e-09  Score=100.01  Aligned_cols=141  Identities=12%  Similarity=0.087  Sum_probs=99.7

Q ss_pred             EEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcc-----hh-----hHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           90 ILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS-----VQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        90 i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~-----~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      .+..|-+|+-+    .|+++...       |+.+.||.-..     ..     ...+..+|..+|.++...      .|.
T Consensus        11 ~l~likQGAEA----rv~~~~~~-------Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~------GI~   73 (229)
T KOG3087|consen   11 SLELIKQGAEA----RVPRGSFS-------GEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRAL------GIP   73 (229)
T ss_pred             cceeeecccee----eEeeeccC-------CceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHh------CCC
Confidence            56788899999    99999876       67778875322     11     124458899999999632      222


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCC-CCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGS-FSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~-GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      --.=++.     +...-.|+|| |.+| -++.+++...-..+      ..+                     .....+++
T Consensus        74 ~P~l~~~-----D~~~~~i~ME-~~~g~~~vk~~i~~~~~~~------~~d---------------------~~~~~~~~  120 (229)
T KOG3087|consen   74 APRLIFI-----DTYGGQIYME-FIDGASTVKDFILSTMEDE------SED---------------------EGLAELAR  120 (229)
T ss_pred             CceEEEE-----ecCCCeEEEE-eccchhHHHHHHHHHccCc------ccc---------------------hhHHHHHH
Confidence            2222334     4455678899 8876 58888887643111      111                     12256889


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeE--EEeeecccc
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHI--KVGILGNAA  280 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~v--KL~DFGlA~  280 (667)
                      +|-+.+.-||.++|||+||..+||++.++++.+  .++|||++.
T Consensus       121 ~iG~~igklH~ndiiHGDLTTSNill~~~~~~~~~~lIdfgls~  164 (229)
T KOG3087|consen  121 RIGELIGKLHDNDIIHGDLTTSNILLRSDGNQITPILIDFGLSS  164 (229)
T ss_pred             HHHHHHHHhhhCCeecccccccceEEecCCCcCceEEEeecchh
Confidence            999999999999999999999999998855554  899999984

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.85  E-value=1.3e-08  Score=101.59  Aligned_cols=85  Identities=18%  Similarity=0.086  Sum_probs=60.7

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEec
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSH  168 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~  168 (667)
                      +.|+.|.++    .||++...      .|+.|++|+.....   ......+|+++++.+.+.    +.++.+++.+....
T Consensus         4 ~~l~~G~~n----~~~~v~~~------~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~----~~~vp~~~~~~~~~   69 (223)
T cd05154           4 RQLSGGQSN----LTYLLTAG------GGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGT----GVPVPKVLALCEDP   69 (223)
T ss_pred             eecCCCccc----eEEEEEec------CCcceEEEeCCCcccCcccccHHHHHHHHHHhhCC----CCCCCCEEEECCCC
Confidence            678999999    99999875      36789999986543   245678999999999621    33456677665411


Q ss_pred             ccCCCCeEEEEEccCCCCCCHHHHH
Q 005958          169 TTSGRSLFTLVHGQYHGSFSLRHWL  193 (667)
Q Consensus       169 ~~~~~~~~~lVmE~~~~~GsL~~~i  193 (667)
                      .  ..+..++||| |++|++|.+.+
T Consensus        70 ~--~~~~~~~v~e-~i~G~~l~~~~   91 (223)
T cd05154          70 S--VLGTPFYVME-RVDGRVLRDRL   91 (223)
T ss_pred             C--ccCCceEEEE-EeCCEecCCCC
Confidence            0  1236789999 99997776644

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.78  E-value=1.7e-09  Score=121.66  Aligned_cols=150  Identities=15%  Similarity=0.124  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHC-CCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC------------------CCCCCcccccC
Q 005958          237 MRDLLIGVNYLHSH-GLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG------------------PNNSSPDSNMD  297 (667)
Q Consensus       237 ~~QIl~aL~yLHs~-gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~------------------~~Y~APE~l~~  297 (667)
                      +.+++.|+.|+|.. ++||+.|.|++|.++. ++..||+.|+++.....+.                  ..|.|||++..
T Consensus       105 l~~v~dgl~flh~sAk~VH~ni~p~~i~~na-~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~~~  183 (700)
T KOG2137|consen  105 LGNVADGLAFLHRSAKVVHGNIQPEAIVVNA-NGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYLLG  183 (700)
T ss_pred             hhcccchhhhhccCcceeecccchhheeecc-CcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhhcc
Confidence            34555999999976 8999999999999999 9999999999886544421                  56889996655


Q ss_pred             CCCCCchhhHHHHHHHHHHHH-hCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHH
Q 005958          298 RRQMMIAFDMRCVGFMMAKMV-LRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNL  376 (667)
Q Consensus       298 ~~~ys~ksDIWSLGviLyeml-tG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dL  376 (667)
                       ...+.++|+||+||++|.+. .|+..|.          ..|.....-.+...    .    ....+....++.+++++=
T Consensus       184 -~~~~~~sd~fSlG~li~~i~~~gk~i~~----------a~~~~~~~~~~~~~----~----~~~~~~~s~~~p~el~~~  244 (700)
T KOG2137|consen  184 -TTNTPASDVFSLGVLIYTIYNGGKSIIA----------ANGGLLSYSFSRNL----L----NAGAFGYSNNLPSELRES  244 (700)
T ss_pred             -ccccccccceeeeeEEEEEecCCcchhh----------ccCCcchhhhhhcc----c----ccccccccccCcHHHHHH
Confidence             55789999999999999999 5665443          11111111111100    0    001112225677899999


Q ss_pred             HHHhhhcCcCCCCCHHHHHcCCCCCCCCCC
Q 005958          377 LSLLLATKPSKRISCLDALRHPFLCGPRWR  406 (667)
Q Consensus       377 I~~~L~~DP~kRpSa~elL~HPwf~~~~~~  406 (667)
                      |.++|..|+..||++.+++..|||.+...+
T Consensus       245 l~k~l~~~~~~rp~~~~l~~~~ff~D~~~~  274 (700)
T KOG2137|consen  245 LKKLLNGDSAVRPTLDLLLSIPFFSDPGLK  274 (700)
T ss_pred             HHHHhcCCcccCcchhhhhcccccCCchhh
Confidence            999999999999999999999999997743

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.78  E-value=2.6e-07  Score=96.33  Aligned_cols=129  Identities=14%  Similarity=0.098  Sum_probs=88.5

Q ss_pred             CcEEEEEEEcchhh---HH----------HHHHHHHHHHHHhhccCCCCCcceEEEEEEEecccCCCCeEEEEEccCCCC
Q 005958          120 NTKVVLRQLISVQA---QR----------RGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGS  186 (667)
Q Consensus       120 g~~vAvK~i~~~~~---~~----------~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~  186 (667)
                      |+.|.||.......   .+          .+.+|...+.+|... .+.-|.+|-+   .+..........+|||| ++++
T Consensus        45 g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~-GIptP~pVa~---~e~~~~~~~~~s~LVte-~l~~  119 (268)
T PRK15123         45 GKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEV-GVDTMTGVAF---GERGSNPATRTSFIITE-DLAP  119 (268)
T ss_pred             CEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHc-CCCCCCeeEE---EEecCCCccceeEEEEe-eCCC
Confidence            67899997643221   11          367999999998532 3344544433   33111112346789999 8887


Q ss_pred             C-CHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEc
Q 005958          187 F-SLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHIS  265 (667)
Q Consensus       187 G-sL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~  265 (667)
                      - +|.+++.....       ...++                    .....++.+++..+.-||.+||+|+|+++.|||++
T Consensus       120 ~~sL~~~~~~~~~-------~~~~~--------------------~~~~~ll~~la~~i~~LH~~Gi~HgDL~~~NiLl~  172 (268)
T PRK15123        120 TISLEDYCADWAT-------NPPDP--------------------RLKRMLIKRVATMVRDMHAAGINHRDCYICHFLLH  172 (268)
T ss_pred             CccHHHHHHhhcc-------cCCCH--------------------HHHHHHHHHHHHHHHHHHHCcCccCCCChhhEEEe
Confidence            4 79999864210       01121                    34567999999999999999999999999999997


Q ss_pred             C------CCCeEEEeeecccc
Q 005958          266 P------VDRHIKVGILGNAA  280 (667)
Q Consensus       266 ~------~~~~vKL~DFGlA~  280 (667)
                      .      .+..+.|+||+.+.
T Consensus       173 ~~~~~~~~~~~~~LIDl~r~~  193 (268)
T PRK15123        173 LPFPGREEDLKLSVIDLHRAQ  193 (268)
T ss_pred             ccccCCCCCceEEEEECCccc
Confidence            4      24689999999885

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.74  E-value=4e-08  Score=97.05  Aligned_cols=127  Identities=19%  Similarity=0.238  Sum_probs=80.6

Q ss_pred             eEEEEEEcCCCCCCCCcEEEEEEEcchh----------------------------hHHHHHHHHHHHHHHhhccCCCCC
Q 005958          105 VVFEAIVKDSNSPLHNTKVVLRQLISVQ----------------------------AQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus       105 ~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----------------------------~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      .||.|...      .+..+|+|+.+...                            ......+|.+.|.++...    --
T Consensus         1 ~Vy~~~~~------~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~----Gv   70 (188)
T PF01163_consen    1 DVYHAIDP------DGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEA----GV   70 (188)
T ss_dssp             EEEEEEEC------TTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCT----T-
T ss_pred             CEEEEECC------CCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHC----Cc
Confidence            38999887      48899999987310                            012237899999999521    12


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCC--CCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHG--SFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~--~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      ++.+.+++..         -+|||| |++  |..+..+....           ++.                    ....
T Consensus        71 ~vP~p~~~~~---------~~ivME-~I~~~G~~~~~l~~~~-----------~~~--------------------~~~~  109 (188)
T PF01163_consen   71 PVPKPYDYNR---------NVIVME-YIGEDGVPLPRLKDVD-----------LSP--------------------EEPK  109 (188)
T ss_dssp             SS--EEEEET---------TEEEEE---EETTEEGGCHHHCG-----------GGG--------------------STHH
T ss_pred             cCCcEEEEeC---------CEEEEE-ecCCCccchhhHHhcc-----------ccc--------------------hhHH
Confidence            4566665432         369999 999  64444433221           111                    1245


Q ss_pred             HHHHHHHHHHHH-HHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC
Q 005958          235 LLMRDLLIGVNY-LHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE  284 (667)
Q Consensus       235 ~i~~QIl~aL~y-LHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~  284 (667)
                      .++.+++..+.. +|..||+|+||.+.|||++.  +.+.|+|||.|.....
T Consensus       110 ~~~~~il~~~~~~~~~~givHGDLs~~NIlv~~--~~~~iIDf~qav~~~~  158 (188)
T PF01163_consen  110 ELLEEILEEIIKMLHKAGIVHGDLSEYNILVDD--GKVYIIDFGQAVDSSH  158 (188)
T ss_dssp             HHHHHHHHHHHHHHHCTTEEESS-STTSEEEET--TCEEE--GTTEEETTS
T ss_pred             HHHHHHHHHHHHHHHhcCceecCCChhhEEeec--ceEEEEecCcceecCC
Confidence            688888886666 57999999999999999996  4999999999876543

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.56  E-value=1.2e-06  Score=87.90  Aligned_cols=128  Identities=22%  Similarity=0.209  Sum_probs=88.2

Q ss_pred             CCcEEEEEEEcch---------hhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEecccCCCCeEEEEEccCCCC-CC
Q 005958          119 HNTKVVLRQLISV---------QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGS-FS  188 (667)
Q Consensus       119 tg~~vAvK~i~~~---------~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~-Gs  188 (667)
                      .++.|-+|.....         -......+|...+..|.. ..+.-|   +.+++.+.... .....+|||| ++++ .+
T Consensus        31 ~~~~y~~k~~~~~~~~~~~~~~~~~~ra~~E~~~~~~L~~-~Gi~tP---~pva~~~~r~~-~~~~s~lite-~l~~~~~  104 (206)
T PF06293_consen   31 VGRRYYRKRLWNKLRRDRLRFPLRRSRAKREWRNLQRLRE-AGIPTP---EPVAYGERRKG-GGYRSYLITE-ALPGAQD  104 (206)
T ss_pred             cceEEEECCeechhccchhhhcccchHHHHHHHHHHHHHH-cCCCCC---cEEEEEEEcCC-CceeEEEEEE-eCCCccc
Confidence            4566666653321         122356889999998863 233344   44444442211 1245689999 8876 58


Q ss_pred             HHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCC
Q 005958          189 LRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVD  268 (667)
Q Consensus       189 L~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~  268 (667)
                      |.+++....         .+++                    .....++.+++..+.-||.+||+|+|++|.|||++. +
T Consensus       105 L~~~~~~~~---------~~~~--------------------~~~~~ll~~l~~~i~~lH~~gi~H~Dl~~~NILv~~-~  154 (206)
T PF06293_consen  105 LRDLLQQWE---------QLDP--------------------SQRRELLRALARLIAKLHDAGIYHGDLNPSNILVDP-D  154 (206)
T ss_pred             HHHHHHhhc---------ccch--------------------hhHHHHHHHHHHHHHHHHHCcCCCCCCCcccEEEeC-C
Confidence            999988632         1111                    234679999999999999999999999999999998 4


Q ss_pred             C---eEEEeeecccccc
Q 005958          269 R---HIKVGILGNAADF  282 (667)
Q Consensus       269 ~---~vKL~DFGlA~~~  282 (667)
                      +   .+.|+||+.++..
T Consensus       155 ~~~~~~~lIDld~~~~~  171 (206)
T PF06293_consen  155 DGQYRFYLIDLDRMRFR  171 (206)
T ss_pred             CCceeEEEEcchhceeC
Confidence            4   7999999987643

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.49  E-value=5.9e-07  Score=91.98  Aligned_cols=137  Identities=19%  Similarity=0.158  Sum_probs=98.9

Q ss_pred             eEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh------------------------hHHHHHHHHHH
Q 005958           88 FKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ------------------------AQRRGRRAIEV  143 (667)
Q Consensus        88 y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~------------------------~~~~~~rEi~i  143 (667)
                      +.++.+||.|--+    .||.|.+.      .|.++|||.-+...                        ....+++|.++
T Consensus        93 e~iG~~IGvGKEs----dVY~~~~~------~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~  162 (304)
T COG0478          93 EAIGTKIGVGKES----DVYVAIDP------KGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEA  162 (304)
T ss_pred             HhhccccccCccc----eEEEEECC------CCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHH
Confidence            4577999999999    99999988      48999999754210                        01223899999


Q ss_pred             HHHHhhccCCCC-CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCC
Q 005958          144 LKKLVRRRLMYH-SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIG  222 (667)
Q Consensus       144 L~~L~~~~~~~H-pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~  222 (667)
                      |.+|.     .+ -.|.+.+         +.+...+||| +.+|-.|...-              ++.            
T Consensus       163 L~~L~-----~~G~~VP~P~---------~~nRHaVvMe-~ieG~eL~~~r--------------~~~------------  201 (304)
T COG0478         163 LQRLY-----PEGVKVPKPI---------AWNRHAVVME-YIEGVELYRLR--------------LDV------------  201 (304)
T ss_pred             HHHhh-----hcCCCCCCcc---------ccccceeeee-hcccceeeccc--------------Ccc------------
Confidence            99994     12 1344433         3456789999 99995555432              111            


Q ss_pred             CCCccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC
Q 005958          223 GPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE  284 (667)
Q Consensus       223 ~~~~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~  284 (667)
                              ..+..++..|+.-+.-+-..||||+|+.+=||++++ +|.+.++||--+.....
T Consensus       202 --------en~~~il~~il~~~~~~~~~GiVHGDlSefNIlV~~-dg~~~vIDwPQ~v~~~h  254 (304)
T COG0478         202 --------ENPDEILDKILEEVRKAYRRGIVHGDLSEFNILVTE-DGDIVVIDWPQAVPISH  254 (304)
T ss_pred             --------cCHHHHHHHHHHHHHHHHHcCccccCCchheEEEec-CCCEEEEeCcccccCCC
Confidence                    123446777777777777899999999999999999 89999999976654433

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=98.34  E-value=8.6e-06  Score=81.85  Aligned_cols=144  Identities=16%  Similarity=0.129  Sum_probs=93.3

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhH-----------HHHHHHHHHHHHHhhcc
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQ-----------RRGRRAIEVLKKLVRRR  151 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~-----------~~~~rEi~iL~~L~~~~  151 (667)
                      +.-.+|++.+.+-.....    -|.+-.-       .|+.+++|..+.....           ....+++..+.+++.  
T Consensus        28 i~~~~~~~~kv~k~~~r~----~ValIei-------~~~kyIlK~pr~~~~r~er~~~sf~kg~~~~~l~~~~~~i~~--   94 (229)
T PF06176_consen   28 ILDNNYKIIKVFKNTKRN----YVALIEI-------DGKKYILKEPREENRRPERRFKSFFKGSEYSRLINNTDKIRN--   94 (229)
T ss_pred             HHhCCceEEEeecCCCcc----EEEEEEE-------CCcEEEEeccchhhhhHHHHHHHHhccHHHHHHHHHHHHHHH--
Confidence            445788998888776665    4554433       4789999987652211           112455555555531  


Q ss_pred             CCCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHH
Q 005958          152 LMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLR  231 (667)
Q Consensus       152 ~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~  231 (667)
                       .+--....++-+.+-....-....+|+|| |++|..|.++..             ++|                     
T Consensus        95 -~g~~~~~~~yl~~ekk~~~~~~~~~ll~E-YIeG~~l~d~~~-------------i~e---------------------  138 (229)
T PF06176_consen   95 -EGFTEPADPYLAAEKKIFRYTSSYVLLME-YIEGVELNDIED-------------IDE---------------------  138 (229)
T ss_pred             -cCccccccceeeeeeeeccceeEEEEEEE-EecCeecccchh-------------cCH---------------------
Confidence             12333333333333221123356679999 999977765432             111                     


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccc
Q 005958          232 LIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAA  280 (667)
Q Consensus       232 ~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~  280 (667)
                         .+...|.+++.-||+.|++|+|..|.|++++.  +.++++||+..+
T Consensus       139 ---~~~~ki~~~ikqlH~~G~~HGD~hpgNFlv~~--~~i~iID~~~k~  182 (229)
T PF06176_consen  139 ---DLAEKIVEAIKQLHKHGFYHGDPHPGNFLVSN--NGIRIIDTQGKR  182 (229)
T ss_pred             ---HHHHHHHHHHHHHHHcCCccCCCCcCcEEEEC--CcEEEEECcccc
Confidence               14567778899999999999999999999995  569999998764

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>PRK09902 hypothetical protein; Provisional

Probab=98.26  E-value=3.2e-05  Score=77.43  Aligned_cols=141  Identities=13%  Similarity=0.095  Sum_probs=94.9

Q ss_pred             ccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcc--------hhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEE
Q 005958           95 SIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS--------VQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVS  166 (667)
Q Consensus        95 G~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~--------~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~  166 (667)
                      |+|+.+    -|+.....       |+.|-+|.-..        ......+.+|+..|..|... .+.-|-++ +.+.-.
T Consensus        27 ~rgG~S----gV~r~~~~-------g~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~-GvPVP~pv-f~~~~k   93 (216)
T PRK09902         27 RRNGMS----GVQCVERN-------GKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERA-GVIVPKIV-FGEAVK   93 (216)
T ss_pred             CCCCcc----eEEEEEeC-------CcEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHc-CCCCCccc-eeeeec
Confidence            456666    68886655       34677887541        11335678999999999643 22233333 222222


Q ss_pred             ecccCCCCeEEEEEccCCC-CCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHH
Q 005958          167 SHTTSGRSLFTLVHGQYHG-SFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVN  245 (667)
Q Consensus       167 ~~~~~~~~~~~lVmE~~~~-~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~  245 (667)
                      .   ...-..+||+| -++ .-||.+++.+...-       +.++                    ..-..++.+++..+.
T Consensus        94 ~---~~~~rA~LVTe-~L~g~~~L~~~l~~~~~~-------~~~~--------------------~~k~~il~~va~~ia  142 (216)
T PRK09902         94 I---EGEWRALLVTE-DMAGFISIADWYAQHAVS-------PYSD--------------------EVRQAMLKAVALAFK  142 (216)
T ss_pred             c---CCceEEEEEEE-eCCCCccHHHHHhcCCcC-------Ccch--------------------HHHHHHHHHHHHHHH
Confidence            1   13456789999 666 35999988653210       1122                    223569999999999


Q ss_pred             HHHHCCCcccCCCCCcEEEcCCCCe--EEEeeecccc
Q 005958          246 YLHSHGLAHTELRLENVHISPVDRH--IKVGILGNAA  280 (667)
Q Consensus       246 yLHs~gIvHrDLKPeNILl~~~~~~--vKL~DFGlA~  280 (667)
                      -||..|+.|+|+-+.|||++. ++.  ++++||--++
T Consensus       143 ~LH~~Gv~Hgdly~khIll~~-~g~~~v~lIDlEk~r  178 (216)
T PRK09902        143 KMHSVNRQHGCCYVRHIYVKT-EGKAEAGFLDLEKSR  178 (216)
T ss_pred             HHHHCCCcCCCCCHhheeecC-CCCeeEEEEEhhccc
Confidence            999999999999999999986 445  9999998764

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.25  E-value=7e-06  Score=88.11  Aligned_cols=158  Identities=9%  Similarity=-0.043  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccc--------cccCCCCCCCCcccccC----
Q 005958          230 LRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAA--------DFYEDGPNNSSPDSNMD----  297 (667)
Q Consensus       230 ~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~--------~~~~~~~~Y~APE~l~~----  297 (667)
                      +..+...++.|+.+.+-||.+|.+-+|+.++|+|+++ ++.+.|.|=..-.        ...-+.+.|.+|| +..    
T Consensus       116 w~fllrvaRnlA~aFA~lH~~Gh~vGDVn~~~~lVsd-~~~V~LVdsDsfqi~~ng~~~~cpVg~~eftPPE-lQ~~~sf  193 (637)
T COG4248         116 WDFLLRVARNLASAFATLHEHGHVVGDVNQNSFLVSD-DSKVVLVDSDSFQINANGTLHLCPVGVSEFTPPE-LQTLPSF  193 (637)
T ss_pred             cHHHHHHHHHHHHHHHHHHhcCCcccccCccceeeec-CceEEEEcccceeeccCCceEecccCccccCCHH-Hhccccc
Confidence            4677889999999999999999999999999999998 8888887643221        1222347899999 332    


Q ss_pred             -CCCCCchhhHHHHHHHHHHHHhC-CCCChhhhhhhhhhhccCCChh-HHHHHH--HHHhccCCCCCCCCcccccCCCHH
Q 005958          298 -RRQMMIAFDMRCVGFMMAKMVLR-ELMDPLIFTKFKSFLTKGIDPS-CLREFL--LQVLNRNSSSGNTGFQILDRNWGA  372 (667)
Q Consensus       298 -~~~ys~ksDIWSLGviLyemltG-~~PF~~~~~~~~~~~~~g~~~~-~l~~~~--~~~~~~~~~~~~~~~~~~~~~s~e  372 (667)
                       +-.-+...|.|.|||++++++.| +.||.++.+...    .+.+-+ .+....  ...-..........-..+.-+.++
T Consensus       194 ~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI~~~~~----ap~p~E~~Ia~g~f~ya~~~~~g~~p~P~~~P~~~Lpp~  269 (637)
T COG4248         194 VGFERTANHDNFGLAVLIFHLLFGGRHPYSGIPLISD----APNPLETDIAHGRFAYASDQRRGLKPPPRSIPLSMLPPD  269 (637)
T ss_pred             cccCCCccccchhHHHHHHHHHhcCCCCCCcccccCC----CCCcchhhhhcceeeechhccCCCCCCCCCCChhhcCHH
Confidence             22346689999999999999987 999986543221    111111 111000  000000000011111223456789


Q ss_pred             HHHHHHHhhhcC--cCCCCCHHH
Q 005958          373 GWNLLSLLLATK--PSKRISCLD  393 (667)
Q Consensus       373 ~~dLI~~~L~~D--P~kRpSa~e  393 (667)
                      +..|..+|+..-  |.-|||++.
T Consensus       270 vqAlF~qaF~~~~~~~~RP~a~a  292 (637)
T COG4248         270 VQALFQQAFTESGVATPRPTAKA  292 (637)
T ss_pred             HHHHHHHHhcccCCCCCCCCHHH
Confidence            999999999863  568999753

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.21  E-value=6.8e-06  Score=92.84  Aligned_cols=145  Identities=14%  Similarity=0.156  Sum_probs=95.5

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhH------------------------------------H
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQ------------------------------------R  135 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~------------------------------------~  135 (667)
                      ..|+.++-|    .||+|+.+      +|+.||||+.++.-..                                    +
T Consensus       131 ~PiAsASIa----QVH~A~L~------sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~  200 (517)
T COG0661         131 EPIASASIA----QVHRAVLK------SGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEK  200 (517)
T ss_pred             CchhhhhHh----hheeEEec------CCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHH
Confidence            688999999    99999999      4999999998752100                                    0


Q ss_pred             H------HHHHHHHHHHHhhccCCCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHH--HhcCCCcccccccC
Q 005958          136 R------GRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWL--QQADWLPTLEATLA  207 (667)
Q Consensus       136 ~------~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i--~~~~~~~~l~~~~~  207 (667)
                      .      ..+|...+.++++. .-+.++| ++=.+|.    +-.+.-.|+|| |++|-.+.++.  +..          .
T Consensus       201 ~l~~ElDy~~EA~n~~~~~~n-f~~~~~v-~VP~V~w----e~t~~~VLtmE-~i~Gi~i~d~~~l~~~----------g  263 (517)
T COG0661         201 RLREELDYRREAANAERFREN-FKDDPDV-YVPKVYW----EYTTRRVLTME-WIDGIKISDIAALKSA----------G  263 (517)
T ss_pred             HHHHHhCHHHHHHHHHHHHHH-cCCCCCe-Eeceeeh----hccCCcEEEEE-eeCCEecccHHHHHhc----------C
Confidence            0      14566666665421 1133433 3333332    13466799999 99998888773  332          2


Q ss_pred             CCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC
Q 005958          208 LDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG  286 (667)
Q Consensus       208 l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~  286 (667)
                      ++.+..               ....+..++.|+       -..|++|.|.+|.||+++. +|.+.+.|||+...+....
T Consensus       264 ~d~k~i---------------a~~~~~~f~~q~-------~~dgffHaDpHpGNi~v~~-~g~i~~lDfGi~g~l~~~~  319 (517)
T COG0661         264 IDRKEL---------------AELLVRAFLRQL-------LRDGFFHADPHPGNILVRS-DGRIVLLDFGIVGRLDPKF  319 (517)
T ss_pred             CCHHHH---------------HHHHHHHHHHHH-------HhcCccccCCCccceEEec-CCcEEEEcCcceecCCHHH
Confidence            231110               112333344443       3489999999999999999 8999999999987776554

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=98.16  E-value=2.5e-05  Score=79.60  Aligned_cols=74  Identities=11%  Similarity=0.054  Sum_probs=53.2

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEecccC
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTS  171 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~~~  171 (667)
                      ..||.|..+    .||+.         .+..+++|..........+.+|.++++.+.. ..+   .+.+.+++..     
T Consensus         7 ~~i~~G~t~----~~y~~---------~~~~~VlR~~~~~~~~~~i~~E~~~l~~l~~-~gl---pvP~~~~~~~-----   64 (226)
T TIGR02172         7 TQTGEGGNG----ESYTH---------KTGKWMLKLYNPGFDKETIKREFDASRKVFS-LGI---PTPHPFDLVE-----   64 (226)
T ss_pred             eeecCCCCc----ceeEe---------cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH-cCC---CCCceEEEEe-----
Confidence            578999999    99973         2446889998765445667999999999962 111   2455666665     


Q ss_pred             CCCeEEEEEccCCCCCC
Q 005958          172 GRSLFTLVHGQYHGSFS  188 (667)
Q Consensus       172 ~~~~~~lVmE~~~~~Gs  188 (667)
                      ..+...+||| +++|.+
T Consensus        65 ~~~~~glv~e-~i~G~~   80 (226)
T TIGR02172        65 DGGRLGLIYE-LIVGKR   80 (226)
T ss_pred             cCCeeeeeee-ecCCcc
Confidence            5566789999 999953

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=98.16  E-value=1.6e-05  Score=76.93  Aligned_cols=131  Identities=18%  Similarity=0.129  Sum_probs=95.3

Q ss_pred             EEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEec
Q 005958           89 KILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSH  168 (667)
Q Consensus        89 ~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~  168 (667)
                      +..+.||+|++|    .||+|.+.       |..+|+|+-+.+.....+..|.++|..+.     .----.++|.+-.  
T Consensus        25 ~v~~~L~KG~~s----~Vyl~~~~-------~~~~a~Kvrr~ds~r~~l~kEakiLeil~-----g~~~~p~vy~yg~--   86 (201)
T COG2112          25 RVEKELAKGTTS----VVYLGEWR-------GGEVALKVRRRDSPRRNLEKEAKILEILA-----GEGVTPEVYFYGE--   86 (201)
T ss_pred             hhhhhhhccccc----EEEEeecc-------CceEEEEEecCCcchhhHHHHHHHHHHhh-----hcCCCceEEEech--
Confidence            456889999999    99999987       46899999888777788999999999996     2333345555533  


Q ss_pred             ccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 005958          169 TTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLH  248 (667)
Q Consensus       169 ~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLH  248 (667)
                             .++.|| |..|-.|.+.-...            +                        +.-...++++---|-
T Consensus        87 -------~~i~me-~i~G~~L~~~~~~~------------~------------------------rk~l~~vlE~a~~LD  122 (201)
T COG2112          87 -------DFIRME-YIDGRPLGKLEIGG------------D------------------------RKHLLRVLEKAYKLD  122 (201)
T ss_pred             -------hhhhhh-hhcCcchhhhhhcc------------c------------------------HHHHHHHHHHHHHHH
Confidence                   345599 99997877664421            0                        223445566655567


Q ss_pred             HCCCcccCCC-CCcEEEcCCCCeEEEeeecccccc
Q 005958          249 SHGLAHTELR-LENVHISPVDRHIKVGILGNAADF  282 (667)
Q Consensus       249 s~gIvHrDLK-PeNILl~~~~~~vKL~DFGlA~~~  282 (667)
                      ..||-|..|. |..+++.. ++.+.|+||..|..-
T Consensus       123 ~~GI~H~El~~~~k~vlv~-~~~~~iIDFd~At~k  156 (201)
T COG2112         123 RLGIEHGELSRPWKNVLVN-DRDVYIIDFDSATFK  156 (201)
T ss_pred             HhccchhhhcCCceeEEec-CCcEEEEEccchhhc
Confidence            7899999997 55555444 569999999999743

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=98.05  E-value=9.7e-05  Score=75.26  Aligned_cols=139  Identities=18%  Similarity=0.169  Sum_probs=94.6

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhH---------------------HH-----HHHHHHHHH
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQ---------------------RR-----GRRAIEVLK  145 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~---------------------~~-----~~rEi~iL~  145 (667)
                      ..|+.|.-+    .||+|...      .+..+|+|+.+.....                     +.     ..+|+..|+
T Consensus        54 g~istGKEA----~Vy~a~~~------~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~~W~~kEf~NL~  123 (268)
T COG1718          54 GCISTGKEA----NVYLAETG------DGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVFAWARKEFRNLK  123 (268)
T ss_pred             eeecCCcce----EEEeeccC------CCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHHHHHHHHHHHHH
Confidence            356667767    99999875      4899999998742110                     11     167888888


Q ss_pred             HHhhccCCCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCC
Q 005958          146 KLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPA  225 (667)
Q Consensus       146 ~L~~~~~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~  225 (667)
                      ++...    +-.+.+-+.+..         -.|||| |++...        ...|      .|.+               
T Consensus       124 R~~eA----GVrvP~Pi~~~~---------nVLvME-fIg~~g--------~pAP------~LkD---------------  160 (268)
T COG1718         124 RAYEA----GVRVPEPIAFRN---------NVLVME-FIGDDG--------LPAP------RLKD---------------  160 (268)
T ss_pred             HHHHc----CCCCCCceeecC---------CeEEEE-eccCCC--------CCCC------Cccc---------------
Confidence            87532    344445555443         579999 888721        1111      1111               


Q ss_pred             ccccHHHHHHHHHHHHHHHHHHHH-CCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC
Q 005958          226 ASRQLRLIRLLMRDLLIGVNYLHS-HGLAHTELRLENVHISPVDRHIKVGILGNAADFYED  285 (667)
Q Consensus       226 ~~~~~~~i~~i~~QIl~aL~yLHs-~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~  285 (667)
                      .++.+.....+..++++.+.-|-. .|+||+||..=|||+.  ++.+.|+|||-|.....+
T Consensus       161 v~~e~~e~~~~~~~~v~~~~~l~~~a~LVHgDLSEyNiL~~--~~~p~iID~~QaV~~~hp  219 (268)
T COG1718         161 VPLELEEAEGLYEDVVEYMRRLYKEAGLVHGDLSEYNILVH--DGEPYIIDVSQAVTIDHP  219 (268)
T ss_pred             CCcCchhHHHHHHHHHHHHHHHHHhcCcccccchhhheEEE--CCeEEEEECccccccCCC
Confidence            111122456688999999998877 8999999999999999  589999999999766543

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=97.99  E-value=0.00014  Score=72.66  Aligned_cols=83  Identities=23%  Similarity=0.237  Sum_probs=60.1

Q ss_pred             EeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEeccc
Q 005958           91 LDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTT  170 (667)
Q Consensus        91 ~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~~  170 (667)
                      ++.|+.|..+    .||++....       ..+++|..........+.+|..+++.+...    ...+.+++......  
T Consensus         2 i~~l~~G~~n----~~~~v~~~~-------~~~vlK~~~~~~~~~~~~~e~~~~~~l~~~----~~pvP~~~~~~~~~--   64 (239)
T PF01636_consen    2 IRPLSGGFSN----RVYRVTTDD-------GRYVLKFYRPPDAAERLRREAAVLRQLAEH----GIPVPRVLAFDTSD--   64 (239)
T ss_dssp             EEEEEESSSS----EEEEEEETT-------SEEEEEEESSHHHHHHHHHHHHHHHHHHHT----TSBS--EEEEEEET--
T ss_pred             CccCCCCCee----eEEEEEECC-------cEEEEEEeCCCCCHHHHHHHHHHHHHHHhc----CCCCceEEeecccc--
Confidence            5789999999    999999773       589999987765566788999999999731    12355666644322  


Q ss_pred             CCCCeEEEEEccCCCCCCHHH
Q 005958          171 SGRSLFTLVHGQYHGSFSLRH  191 (667)
Q Consensus       171 ~~~~~~~lVmE~~~~~GsL~~  191 (667)
                      ......+++|+ +++|..+..
T Consensus        65 ~~~~~~~~~~~-~i~g~~~~~   84 (239)
T PF01636_consen   65 EFNGFPYLLME-YIPGRPLDD   84 (239)
T ss_dssp             EETSEEEEEEE-EESSEEHHH
T ss_pred             cccccceEEEE-Eeccccccc
Confidence            14456899999 999977777

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=97.99  E-value=8.7e-05  Score=75.95  Aligned_cols=79  Identities=23%  Similarity=0.109  Sum_probs=55.0

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEecccC
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTS  171 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~~~  171 (667)
                      ..|-.|.++   ..||+....       +..+.+|+..... .....+|+++++.+.     .+--+.+++++..     
T Consensus         4 ~~~~~g~~~---~~v~~~~~~-------~~~~~vk~~~~~~-~~~~~~E~~~l~~l~-----~~~~vP~v~~~~~-----   62 (244)
T cd05150           4 ERVTEGQSG---ATVYRLDGK-------NPGLYLKIAPSGP-TYELEREAERLRWLA-----GKLPVPEVIDYGS-----   62 (244)
T ss_pred             eecCCCCCc---CeEEEEcCC-------CCcEEEEecCCCc-ccchHHHHHHHHHHH-----hcCCCCeEEEEEe-----
Confidence            345566664   189998643       3678889876543 345688999999997     3444557777766     


Q ss_pred             CCCeEEEEEccCCCCCCHHHH
Q 005958          172 GRSLFTLVHGQYHGSFSLRHW  192 (667)
Q Consensus       172 ~~~~~~lVmE~~~~~GsL~~~  192 (667)
                      ..+..++||| +++|.+|.+.
T Consensus        63 ~~~~~~lv~e-~i~G~~l~~~   82 (244)
T cd05150          63 DDGRAWLLTS-AVPGVPAAAL   82 (244)
T ss_pred             cCCccEEEEE-eeCCccHhHh
Confidence            4467889999 9998777643

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=97.87  E-value=7.9e-05  Score=88.88  Aligned_cols=195  Identities=21%  Similarity=0.302  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHhhccCCCCCcceEEEEEEEecccCCCC-eEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhc
Q 005958          138 RRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRS-LFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKV  216 (667)
Q Consensus       138 ~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~~~~~~-~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~  216 (667)
                      ..|+..+.+++      |+|++.++.|-....  ..+ ...+..| +|...++...+..-+         .         
T Consensus       230 E~e~~~l~k~~------~~n~~~~~~~~le~~--~~g~~~~v~~~-~~s~~~~~~~~q~v~---------~---------  282 (1351)
T KOG1035|consen  230 EIELESLSKIA------HDNLGGYFVYGLERL--FRGIVLDVLQE-ICSKVELRSLLQSVG---------S---------  282 (1351)
T ss_pred             HHHHHHHHhhc------cccccceeEEeehhh--cchHHHHHHHh-hcCccchHHHHhhcc---------c---------
Confidence            45666666674      999999998876221  122 2334557 788878888877643         1         


Q ss_pred             CCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCC---cEEEcCCCCeEEEe--eecccccccCCC-----
Q 005958          217 GDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLE---NVHISPVDRHIKVG--ILGNAADFYEDG-----  286 (667)
Q Consensus       217 ~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPe---NILl~~~~~~vKL~--DFGlA~~~~~~~-----  286 (667)
                                 .+...++.+..+++.||.|+|+....|.-+...   +--.+. .+.+.++  ||+....+....     
T Consensus       283 -----------i~~~~~r~~~~~~~~GL~~~h~~~l~~v~L~~s~~~~~~~~~-e~~~~~sl~~~~ss~~l~d~~~~~~~  350 (1351)
T KOG1035|consen  283 -----------IPLETLRILHQKLLEGLAYLHSLSLEHVVLSASSSKESTVDG-EGVVAISLSDFDSSKPLPDNEKSFSD  350 (1351)
T ss_pred             -----------cCHHHHHHHHHHHhhhHHHHHHhccceeEEecccccccccCc-cceeecchhhhcccccCCCcccchhh
Confidence                       224678889999999999999995555544333   222233 4566666  888887766544     


Q ss_pred             ---CCCCCcccccCCCCCCc--hhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCC
Q 005958          287 ---PNNSSPDSNMDRRQMMI--AFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNT  361 (667)
Q Consensus       287 ---~~Y~APE~l~~~~~ys~--ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~  361 (667)
                         ..+.|||.. ....+..  ..|+|.+|..+..+..|..+-.              ..    ......          
T Consensus       351 ~~~~~~~~~e~~-~~~~~~~~r~~dL~~lgll~~~~~~~~~i~~--------------~~----~~~~~~----------  401 (1351)
T KOG1035|consen  351 LLAEIRNADEDL-KENTAKKSRLTDLWCLGLLLLQLSQGEDISE--------------KS----AVPVSL----------  401 (1351)
T ss_pred             cCcccccccccc-ccccchhhhhhHHHHHHHHHhhhhhcCcccc--------------cc----cchhhh----------
Confidence               445677733 3333433  4699999999999998864310              00    011111          


Q ss_pred             CcccccCCCH-HHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          362 GFQILDRNWG-AGWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       362 ~~~~~~~~s~-e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                          .+..+. +..+++.+|+.-|+++|+++.+++.|||.....
T Consensus       402 ----l~~~~~~~~~d~~~~~~~~~~~~Rl~~~~ll~~~f~~~~~  441 (1351)
T KOG1035|consen  402 ----LDVLSTSELLDALPKCLDEDSEERLSALELLTHPFLRFPT  441 (1351)
T ss_pred             ----hccccchhhhhhhhhhcchhhhhccchhhhhhchhccccc
Confidence                111111 677999999999999999999999999997654

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=97.79  E-value=2.7e-06  Score=95.38  Aligned_cols=239  Identities=13%  Similarity=0.011  Sum_probs=162.1

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCc-ceEEEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSY-SMQVHGY  164 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~Hpn-Iv~l~~~  164 (667)
                      ..|.....+++|+++    .+++.+...     +. ....+.+...   ....-++++|.++      +||| .+..++-
T Consensus       242 kws~~fh~fvK~alt----knpKkRpta-----ek-lL~h~fvs~~---l~~rl~~eLLdK~------n~P~~~v~~~~d  302 (829)
T KOG0576|consen  242 KWSEFFHNFVKGALT----KNPKKRPTA-----EK-LLQHPFVSQT---LSRRLAIELLDKV------NNPNPVVRYLED  302 (829)
T ss_pred             cchHHHHHHHHHHhc----CCCccCCCh-----hh-heeceeeccc---hhhHHHHHHHHHc------cCCCCccccccc
Confidence            345566778999999    999998775     33 3336766443   3345688999999      5999 6665555


Q ss_pred             EEecccCCCCeEEEEEccCCCCC-CHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          165 VSSHTTSGRSLFTLVHGQYHGSF-SLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       165 ~~~~~~~~~~~~~lVmE~~~~~G-sL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++     .+.+.+++|+ ++++| +-...+             .-+|..               +..-++..+.+.-+++
T Consensus       303 ~~-----~E~~~~i~~~-i~s~~rs~~~~~-------------~~se~~---------------~~~~~~~~~~r~et~~  348 (829)
T KOG0576|consen  303 YD-----GEDYLWIPMR-ICSTGRSSALEM-------------TVSEIA---------------LEQYQFAYPLRKETRP  348 (829)
T ss_pred             CC-----cccccchhhh-hhcCCccccccC-------------ChhhHh---------------hhhhhhhhhhhhhccc
Confidence            55     7889999999 99986 211111             111111               1123566678888899


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMA  315 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSLGviLy  315 (667)
                      ++|||+.-=+|||    ||+..+  +..+..||+.+..+...        .+.++|||+. ....+....|.|++|+-..
T Consensus       349 l~~l~~~~~~~~d----~~l~s~--~~~~~~~~~v~~~L~~~~~~~t~~~~~~~~~pev~-~~~~~~~~p~~~~~~~~~~  421 (829)
T KOG0576|consen  349 LAELHSSYKVHRD----NILGSE--EEVKLLDFAVPPQLTRTMKPRTAIGTPEPLAPEVI-QENTIDGCPDSGSLAVSAI  421 (829)
T ss_pred             ccccccccccCcc----cccccc--cccccccccCCcccCcccccccCCCCCCCCCchhh-cccccccCCCccCCCcchh
Confidence            9999998888999    888874  88999999998766544        3788999954 4555899999999999888


Q ss_pred             HHHhCCCCChhhhhhhhhhhccCCCh--hHHHHHHHHHhccCCCCCCCCcccccCCCH-HHHHHHHHhhhcCcCCCCCHH
Q 005958          316 KMVLRELMDPLIFTKFKSFLTKGIDP--SCLREFLLQVLNRNSSSGNTGFQILDRNWG-AGWNLLSLLLATKPSKRISCL  392 (667)
Q Consensus       316 emltG~~PF~~~~~~~~~~~~~g~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~-e~~dLI~~~L~~DP~kRpSa~  392 (667)
                      +|.-|.+|-..  ... .....|..+  ..+...                   ...++ .-.++...|+..-|..|+...
T Consensus       422 ~~ap~~pPr~~--P~~-~~~~~g~~p~s~~L~~~-------------------~aw~~~~~~~~~~~~~~g~P~~pkv~m  479 (829)
T KOG0576|consen  422 QMAPGLPPRSS--PPA-VLPMIGNGPNSPMLTDK-------------------SAWSPVFHRDFPAPCLNGLPPTPKVHM  479 (829)
T ss_pred             hcCCCCCCCCC--Ccc-ccCCCCCCCCccccchh-------------------hhcCcccccCCcccccCCCCCCCcchh
Confidence            88888877431  000 000112111  000000                   00011 112588899999999999999


Q ss_pred             HHHcCCCCCCCCCC
Q 005958          393 DALRHPFLCGPRWR  406 (667)
Q Consensus       393 elL~HPwf~~~~~~  406 (667)
                      .++.|.+|++...+
T Consensus       480 gacfsKvfngCpl~  493 (829)
T KOG0576|consen  480 GACFSKVFNGCPLR  493 (829)
T ss_pred             hHHHHHHhccCccc
Confidence            99999999987643

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=97.73  E-value=0.0011  Score=66.07  Aligned_cols=131  Identities=15%  Similarity=0.171  Sum_probs=92.4

Q ss_pred             CCeEEEeEeccCCC-CCCCceEEEEEEcCCCCCCCCcEEEEEEEcc------------hh-----------hHHHHHHHH
Q 005958           86 GDFKILDRVSIGLS-GRADEVVFEAIVKDSNSPLHNTKVVLRQLIS------------VQ-----------AQRRGRRAI  141 (667)
Q Consensus        86 ~~y~i~~~LG~G~f-G~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~------------~~-----------~~~~~~rEi  141 (667)
                      .+++.++.||.|.- |    .||++...       |+.||+|+...            ..           ...-+..|.
T Consensus        37 ~~I~flefLg~g~~~~----~V~kv~I~-------g~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~PF~~EC  105 (207)
T PF13095_consen   37 DDIEFLEFLGHGSHDG----YVFKVEID-------GRIYALKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADPFNCEC  105 (207)
T ss_pred             CcEeeeeecCCCCcee----EEEEEEEC-------CeEEEEEEeeccccCCCccccccccccccccchhhhhcChHHHHH
Confidence            78999999999999 9    99999986       58999999331            00           001236788


Q ss_pred             HHHHHHhhccCCCCCcc--eEEEEEEEecc---c----------CCCCeEEEEEccCCCCCCHHHHHHhcCCCccccccc
Q 005958          142 EVLKKLVRRRLMYHSYS--MQVHGYVSSHT---T----------SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATL  206 (667)
Q Consensus       142 ~iL~~L~~~~~~~HpnI--v~l~~~~~~~~---~----------~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~  206 (667)
                      ++..+|+.   .++.++  |++|||.....   .          .......||.| |.....                  
T Consensus       106 RAfgRLke---~~~e~~~Avkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD-~v~~~~------------------  163 (207)
T PF13095_consen  106 RAFGRLKE---AGREGLWAVKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKD-FVPDDP------------------  163 (207)
T ss_pred             HhhHHHHh---ccccCceEEEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEe-ecCCcc------------------
Confidence            88887763   256677  99999985331   0          11223467788 766622                  


Q ss_pred             CCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeeccc
Q 005958          207 ALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNA  279 (667)
Q Consensus       207 ~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA  279 (667)
                      .+.                        -.-+.+|++-|..+|..||+-+|+|+.|.. +     =||+|||.+
T Consensus       164 ~~~------------------------~~~~~~~~~dl~~~~k~gI~~~Dv~~~ny~-~-----G~lvDfs~~  206 (207)
T PF13095_consen  164 PLQ------------------------IRDIPQMLRDLKILHKLGIVPRDVKPRNYR-G-----GKLVDFSSS  206 (207)
T ss_pred             ccc------------------------hhHHHHHHHHHHHHHHCCeeeccCcccccc-C-----CEEEecccC
Confidence            001                        114567788889999999999999999975 2     389999975

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=97.69  E-value=0.00019  Score=81.12  Aligned_cols=144  Identities=11%  Similarity=0.104  Sum_probs=89.6

Q ss_pred             EeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh---------------------------------HHHH
Q 005958           91 LDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA---------------------------------QRRG  137 (667)
Q Consensus        91 ~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~---------------------------------~~~~  137 (667)
                      -+.||.-+.|    .|++|+.+.      |+.||||+-++.-.                                 .+.+
T Consensus       166 ~~piaaASla----QVhrA~L~~------G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L  235 (538)
T KOG1235|consen  166 EEPIAAASLA----QVHRARLKN------GEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSL  235 (538)
T ss_pred             cchhhhcchh----heEEEEecC------CCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhh
Confidence            3678999999    999999994      99999999774110                                 0111


Q ss_pred             ------HHHHHHHHHHhhccCCCCCc------ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHH--HHhcCCCcccc
Q 005958          138 ------RRAIEVLKKLVRRRLMYHSY------SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHW--LQQADWLPTLE  203 (667)
Q Consensus       138 ------~rEi~iL~~L~~~~~~~Hpn------Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~--i~~~~~~~~l~  203 (667)
                            .+|.+...+++  ..+.|-+      |.++|-.       -...-.|+|| |++|.-+.|.  |.+++      
T Consensus       236 ~~ELDF~~EA~Nae~~~--~~f~~~~~~~~V~VP~Vy~~-------~st~RVLtME-~~~G~~i~Dl~~i~~~g------  299 (538)
T KOG1235|consen  236 PQELDFTKEAKNAERFR--ENFKDFSLLTYVLVPKVYWD-------LSTKRVLTME-YVDGIKINDLDAIDKRG------  299 (538)
T ss_pred             HhhcchHHHHHhHHHHH--HHHHhcccccceeCCeehhh-------cCcceEEEEE-ecCCccCCCHHHHHHcC------
Confidence                  23333333332  1223444      3343333       2356799999 9999666543  44443      


Q ss_pred             cccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcC---CCCeEEEeeecccc
Q 005958          204 ATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISP---VDRHIKVGILGNAA  280 (667)
Q Consensus       204 ~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~---~~~~vKL~DFGlA~  280 (667)
                          ++..+..               -..+..++.||+       ..|++|+|=+|.||++..   .++.+.+-|||+..
T Consensus       300 ----i~~~~i~---------------~~l~~~~~~qIf-------~~GffHaDPHPGNilv~~~~~~~~~ivllDhGl~~  353 (538)
T KOG1235|consen  300 ----ISPHDIL---------------NKLVEAYLEQIF-------KTGFFHADPHPGNILVRPNPEGDEEIVLLDHGLYA  353 (538)
T ss_pred             ----CCHHHHH---------------HHHHHHHHHHHH-------hcCCccCCCCCCcEEEecCCCCCccEEEEcccccc
Confidence                2221110               012233333333       478999999999999994   36789999999987


Q ss_pred             cccCCC
Q 005958          281 DFYEDG  286 (667)
Q Consensus       281 ~~~~~~  286 (667)
                      .+....
T Consensus       354 ~is~~~  359 (538)
T KOG1235|consen  354 VISHKT  359 (538)
T ss_pred             cccHHH
Confidence            765543

>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle

Probab=97.68  E-value=7.5e-05  Score=74.30  Aligned_cols=111  Identities=23%  Similarity=0.419  Sum_probs=79.4

Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCCccccccCCceeeeeecccccccccc-CCccccccccccccccCCCCCcccccccc
Q 005958          432 RQPQRARLAYFVELMEMLNPHSKPKNWLEFLPGKWRMLYCTGRHIGLTLR-QPPARILVGYVRLTVTRPSKSNTNLSFTS  510 (667)
Q Consensus       432 ~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (667)
                      +..++..+...++.+|..+|.+........+.|.|++.|++...+...+. ...+..-++.+...|+.......+     
T Consensus        21 ~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~~~~~~~~~~~~v~Q~id~~~~~~~N-----   95 (198)
T PF04755_consen   21 SPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQRGRLPGVRVGRVFQTIDADNGRVEN-----   95 (198)
T ss_pred             CHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCccccccccccccccccceEEEEECCCceEEE-----
Confidence            34567788899999999999988777778899999999998776653322 222234467777887655543111     


Q ss_pred             CCccccccCCCCCCCCCCCCcceechhhhhhcccCeeEEeecccCC
Q 005958          511 DISFTVMTGREWPHDKTGITGKLQINSLFRLMAGRRLYIKEEKTTP  556 (667)
Q Consensus       511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (667)
                      .+.|.     .||    ...|.+.+...+....++|+-++-+++.-
T Consensus        96 ~v~~~-----~~~----~~~~~~~v~a~~~~~~~~rv~v~f~~~~l  132 (198)
T PF04755_consen   96 VVELS-----GFP----LLEGSVSVRASLEVRSPRRVEVTFERASL  132 (198)
T ss_pred             EEEEe-----ccC----ceEEEEEEEEEEEEccccEEEEEEEeeEE
Confidence            11233     255    45788999999999999999999887763

The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=97.68  E-value=0.00017  Score=73.54  Aligned_cols=80  Identities=13%  Similarity=0.007  Sum_probs=47.6

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEecccC
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTS  171 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~~~  171 (667)
                      +.|+.|+..-   .||+..          ..+++|..........+.+|.++|..|.....+..|.   +++.....  +
T Consensus         3 ~~~~~gG~~n---~vy~~~----------~~~VlR~~~~~~~~~~~~~E~~~l~~L~~~~~v~vP~---~~~~~~~~--~   64 (235)
T cd05155           3 EPVDSGGTDN---ATFRLG----------DDMSVRLPSAAGYAGQVRKEQRWLPRLAPHLPLPVPE---PLGKGEPG--E   64 (235)
T ss_pred             eeccCCCccc---ceEEcC----------CceEEEcCCccchHHHHHHHHHHHHHHhccCCCCCCc---eeecCCCc--c
Confidence            4667666651   588651          2477888665434457899999999996321223333   33332211  1


Q ss_pred             CCCeEEEEEccCCCCCCHH
Q 005958          172 GRSLFTLVHGQYHGSFSLR  190 (667)
Q Consensus       172 ~~~~~~lVmE~~~~~GsL~  190 (667)
                      .....+++|+ +++|.++.
T Consensus        65 ~~~~~~~l~~-~i~G~~l~   82 (235)
T cd05155          65 GYPWPWSVYR-WLEGETAT   82 (235)
T ss_pred             CCCcceEEEE-eecCCCCC
Confidence            2235588999 99886664

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=97.67  E-value=0.00077  Score=67.25  Aligned_cols=135  Identities=21%  Similarity=0.246  Sum_probs=95.2

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh------------------hHHHHHHHHHHHHHHhhccCC
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ------------------AQRRGRRAIEVLKKLVRRRLM  153 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~------------------~~~~~~rEi~iL~~L~~~~~~  153 (667)
                      ..||+|+.=    .||.--        ......||++....                  ..++..+|+.....+......
T Consensus         7 ~~i~~G~~R----~cy~HP--------~dp~~cIKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~   74 (199)
T PF10707_consen    7 DLIAQGGER----DCYQHP--------DDPNLCIKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGV   74 (199)
T ss_pred             cccccCCCc----eEEECC--------CCCCeEEEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCC
Confidence            568899887    777543        23456889887654                  235567888888888524556


Q ss_pred             CCCcceEEEEEEEecccCCCCeEEEEEccCCC------CCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCcc
Q 005958          154 YHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHG------SFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAAS  227 (667)
Q Consensus       154 ~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~------~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~  227 (667)
                      .+.+|.+++|+.+     .+....+|+| ...      .-+|.+++.+.          .+++                 
T Consensus        75 ~~~~i~r~~G~ve-----T~~G~Glv~e-~I~d~dG~~s~TL~~~l~~~----------~~~~-----------------  121 (199)
T PF10707_consen   75 DWSHIPRFYGFVE-----TNLGLGLVVE-LIRDADGNISPTLEDYLKEG----------GLTE-----------------  121 (199)
T ss_pred             cccccccEeEEEe-----cCCceEEEEE-EEECCCCCcCccHHHHHHcC----------CccH-----------------
Confidence            7999999999999     6677888888 542      24688888653          2332                 


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCC--C-eEEEee-ecc
Q 005958          228 RQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVD--R-HIKVGI-LGN  278 (667)
Q Consensus       228 ~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~--~-~vKL~D-FGl  278 (667)
                             .+...+-+-.+||-+++|+.+||+|.||++...+  . .+.|+| ||.
T Consensus       122 -------~~~~~L~~f~~~l~~~~Iv~~dl~~~NIv~~~~~~~~~~lvlIDG~G~  169 (199)
T PF10707_consen  122 -------ELRQALDEFKRYLLDHHIVIRDLNPHNIVVQRRDSGEFRLVLIDGLGE  169 (199)
T ss_pred             -------HHHHHHHHHHHHHHHcCCeecCCCcccEEEEecCCCceEEEEEeCCCC
Confidence                   2444445556788899999999999999997522  2 577887 454

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>PLN02876 acyl-CoA dehydrogenase

Probab=97.57  E-value=0.00069  Score=81.79  Aligned_cols=84  Identities=18%  Similarity=0.103  Sum_probs=56.5

Q ss_pred             EEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcc--eEEEEE
Q 005958           90 ILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYS--MQVHGY  164 (667)
Q Consensus        90 i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnI--v~l~~~  164 (667)
                      -++.|+.|.++    .+|+......+   ....+++|+.....   ....+.+|+++|+.+.     .|++|  .+++.+
T Consensus        42 ~v~~l~gG~sn----~ty~l~~~~~~---~~~~~VLR~~p~~~~~~~~~~~~rE~~~l~~L~-----~~~~vpVP~v~~~  109 (822)
T PLN02876         42 KVSQFGHGQSN----PTFLLEVGNGG---SVKRYVLRKKPPGKLLQSAHAVEREYQVLRALG-----EHTDVPVPKVYCL  109 (822)
T ss_pred             eEEEeCCCCcC----ceEEEEECCCC---cceeEEEEeCCCCccCccHHHHHHHHHHHHHHh-----hcCCCCCCcEEEE
Confidence            36788999999    99988765310   12468888765421   2346789999999996     34544  677777


Q ss_pred             EEecccCCCCeEEEEEccCCCCCC
Q 005958          165 VSSHTTSGRSLFTLVHGQYHGSFS  188 (667)
Q Consensus       165 ~~~~~~~~~~~~~lVmE~~~~~Gs  188 (667)
                      +.+.  ...+..|+||| |++|..
T Consensus       110 ~~d~--~v~G~~flVME-~v~G~~  130 (822)
T PLN02876        110 CTDA--SVIGTAFYIME-YLEGRI  130 (822)
T ss_pred             ecCC--CcCCCceEEEE-ecCCcc
Confidence            6522  12356789999 999843

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=97.53  E-value=0.00065  Score=72.26  Aligned_cols=89  Identities=8%  Similarity=0.023  Sum_probs=53.8

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      .++....++.++.|...    .+|++...       +..+++|+.........+..|++++..|... .+.   +.+++.
T Consensus        20 ~~~~~~~i~~~~~G~~n----~~y~v~t~-------~~~~vLK~~~~~~~~~~i~~e~~~l~~L~~~-g~p---vp~~i~   84 (307)
T TIGR00938        20 DLGELLSLKGIAEGVEN----SNYLLTTD-------VGRYILTLYEKRVKAEELPFFLALTTHLAAR-GLP---VPKPVK   84 (307)
T ss_pred             CCCCceeccccCCcccc----ceEEEEeC-------CCcEEEEEecCCCCHHHHHHHHHHHHHHHHC-CCC---CCcccc
Confidence            33445556778888777    89988643       3468899876543345667889999998632 122   333333


Q ss_pred             EEEec-ccCCCCeEEEEEccCCCCCC
Q 005958          164 YVSSH-TTSGRSLFTLVHGQYHGSFS  188 (667)
Q Consensus       164 ~~~~~-~~~~~~~~~lVmE~~~~~Gs  188 (667)
                      ..... .....+..+++|| |++|..
T Consensus        85 t~~g~~~~~~~g~~~~l~e-~i~G~~  109 (307)
T TIGR00938        85 SRDGRQLSTLAGKPACLVE-FLQGLS  109 (307)
T ss_pred             CCCCCeehhcCCeEEEEEE-eCCCCC
Confidence            21100 0013466799999 988844

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=97.50  E-value=0.0027  Score=69.91  Aligned_cols=84  Identities=20%  Similarity=0.189  Sum_probs=57.1

Q ss_pred             EeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---------hhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           91 LDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---------QAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        91 ~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---------~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      .+.||.|.+.    .||++....     .++.|+||.-.+.         -..++...|.+.|+.+...   ...++.++
T Consensus        31 ~~elggGn~N----~VyrV~~~~-----g~~svIVKqa~p~~r~~g~~wpl~~eR~~~Eae~L~~l~~~---~p~~VPkV   98 (401)
T PRK09550         31 AREIGDGNLN----LVFRVSDTE-----GGKSVIVKQALPYVRVVGESWPLTLDRARIEAEALKIQAKY---VPDLVPKV   98 (401)
T ss_pred             eeEcCCCceE----EEEEEEeCC-----CCeEEEEEecCcccccccccccccHHHHHHHHHHHHHHHhh---CCCCCCeE
Confidence            4689999999    999999874     2358999985421         1234567889999987521   12457777


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCC-HHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFS-LRHWLQ  194 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~Gs-L~~~i~  194 (667)
                      +.+       +....++||| ++++.. +.+.+.
T Consensus        99 ~~~-------D~~~~~lVME-~L~~~~~lr~~Ll  124 (401)
T PRK09550         99 YHY-------DEELAVTVME-DLSDHKILRKGLI  124 (401)
T ss_pred             EEE-------CCCCCEEEEe-cCCCccHHHHHHh
Confidence            776       3355789999 887633 444443

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=97.42  E-value=0.00082  Score=70.78  Aligned_cols=85  Identities=9%  Similarity=0.037  Sum_probs=52.5

Q ss_pred             eEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEe
Q 005958           88 FKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSS  167 (667)
Q Consensus        88 y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~  167 (667)
                      ..-++.|..|...    .+|+....       +..+++|+... .....+..|+.++..|.+. .+   .+.+++.....
T Consensus        16 ~~~i~~i~~G~~n----~~y~v~~~-------~~~~vLr~~~~-~~~~~~~~e~~~l~~L~~~-g~---~vp~~i~~~~g   79 (296)
T cd05153          16 LLSFEGISAGIEN----TNYFVTTD-------SGRYVLTLFEK-VSAEELPFFLALLDHLAER-GL---PVPRPIADRDG   79 (296)
T ss_pred             hhheecccCcccc----ceEEEEeC-------CCcEEEEEcCC-CChHhccHHHHHHHHHHHC-CC---CCCccccCCCC
Confidence            3336677778777    89988643       35689998765 3445678899999999632 11   23444332110


Q ss_pred             c-ccCCCCeEEEEEccCCCCCCH
Q 005958          168 H-TTSGRSLFTLVHGQYHGSFSL  189 (667)
Q Consensus       168 ~-~~~~~~~~~lVmE~~~~~GsL  189 (667)
                      . .....+..++|++ +++|..+
T Consensus        80 ~~~~~~~~~~~~l~~-~i~G~~~  101 (296)
T cd05153          80 EYLSELAGKPAALVE-FLAGEHL  101 (296)
T ss_pred             cEeeeeCCceEEEEE-eCCCCCC
Confidence            0 0013456789999 9988554

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]

Probab=97.39  E-value=9.2e-05  Score=89.93  Aligned_cols=252  Identities=12%  Similarity=-0.089  Sum_probs=153.3

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-------HHHHHHHHHHHHHHhhccCCCC
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-------QRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-------~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      +.+..|++.=-+|-|.++       ++.+...    .-.-+-+|+.+...-       .+-...|...++++.      |
T Consensus      1226 s~~e~~EV~l~i~~~~~~-------R~k~Lr~----kid~Fk~~I~ke~d~e~LsePlkemll~e~de~~~~~------h 1288 (2724)
T KOG1826|consen 1226 SAMEHSEVNLGISNHFHF-------RNKWLRS----KIDWFKFSIYKEYDFENLSEPLKEMLLSERDELREAK------H 1288 (2724)
T ss_pred             HHhhhhheeeecccceee-------ccchHhh----hhceeEEEeehhhhHHHHhhHHHHhhhhhhhhhhhhh------c
Confidence            445677776666666554       3444331    111234555443111       112234444555564      9


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      +++...+.-..+.   .....|++++ |+.+|++++.|-+.-.     ....+++                    ..+..
T Consensus      1289 ~~~~~~p~rI~ps---~s~ee~~r~~-~~~~g~~f~iIikg~e-----e~~~ld~--------------------~~v~~ 1339 (2724)
T KOG1826|consen 1289 YLTEVDPLRIPPS---ESTEEYIRSL-YVEFGKLFSIIIKGLE-----ESPDLDR--------------------SPVHL 1339 (2724)
T ss_pred             eeeecccccCCCC---CChHHHHHHH-HHHHhHHHHHHHhccc-----cCCcchh--------------------chHHH
Confidence            9988777665533   5667899999 9999999999876321     1112222                    12333


Q ss_pred             HHHHHHHHHHHHHHC-----CCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCC
Q 005958          236 LMRDLLIGVNYLHSH-----GLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQM  301 (667)
Q Consensus       236 i~~QIl~aL~yLHs~-----gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~y  301 (667)
                      ...+.+.+..-+|+.     --+|++||+-|.+|.. +..+|++++|+.+...+.         .+.|++|+ +.+.-.+
T Consensus      1340 ~~kvsvl~~~~~ls~tnlg~T~v~~~Lkf~lpmIVt-ny~v~~gk~gLdKIknp~~sf~Gl~l~sp~~v~ql-i~N~ik~ 1417 (2724)
T KOG1826|consen 1340 RHKVSVLNRNVILSLTNLGNTNVSKSLKFTLPMIVT-NYNVKLGKGGLDKIKNPVLSFFGLELCSPIYVLQL-IKNEIKF 1417 (2724)
T ss_pred             HHHHHHhccchhhhcccCCccchhhhhhhhccceec-CCcccccccccccccCchHhhhhhhhCCHHHHHHH-HHHHHhh
Confidence            444447888888864     2789999999999998 888999999999833222         15677888 5666678


Q ss_pred             CchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhh
Q 005958          302 MIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLL  381 (667)
Q Consensus       302 s~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L  381 (667)
                      +.++|+|..|+-+|+...|.++|-..                    .+..+....... ....+..-.+.++-.....+|
T Consensus      1418 t~rsdilr~s~~ly~rs~~n~~fi~f--------------------lq~~Lkgiidn~-tf~sIe~l~pgdaNve~~~~L 1476 (2724)
T KOG1826|consen 1418 TKRSDILRRSLSLYLRSDGNAYFIFF--------------------LQPALKGIIDNH-TFFSIEKLKPGDANVEALHRL 1476 (2724)
T ss_pred             hhHHHHHHHHHHHHHHhcccHHHHHH--------------------HHHHHcCccccc-ccccccccCCCcccHHHHHHH
Confidence            88899999999999999998876422                    111221111111 011111112233444455555


Q ss_pred             hcCcCCCCCHHHHHcCCCCCCC
Q 005958          382 ATKPSKRISCLDALRHPFLCGP  403 (667)
Q Consensus       382 ~~DP~kRpSa~elL~HPwf~~~  403 (667)
                      -+.-..||.-...+.-+.|...
T Consensus      1477 l~K~~~rp~q~isls~d~~a~~ 1498 (2724)
T KOG1826|consen 1477 LWKYMERPGQYISLSRDHFAVG 1498 (2724)
T ss_pred             HHHhhhcchhhhhccccccccc
Confidence            5666778888888877777543

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=97.37  E-value=0.00017  Score=75.84  Aligned_cols=138  Identities=14%  Similarity=0.139  Sum_probs=99.0

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-------hH-----------------HHHHHHHH
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-------AQ-----------------RRGRRAIE  142 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-------~~-----------------~~~~rEi~  142 (667)
                      -+.++++||-|.-+    .||.+-+.      .|++.++|.-+...       ..                 -...+|..
T Consensus        93 v~svGnqIGVGKES----DIY~v~d~------~G~~~~lK~HRLGRtSFR~Vk~kRDY~r~r~~~sWlyLSRlaa~kEfa  162 (465)
T KOG2268|consen   93 VESVGNQIGVGKES----DIYVVADE------EGNPLILKLHRLGRTSFRNVKNKRDYLRKRKSGSWLYLSRLAATKEFA  162 (465)
T ss_pred             hhhhcccccccccc----ceEEEecC------CCCchhHHHHhhhhhhHHHhhhhhhhHhcCCccchhhhHHHHHHHHHH
Confidence            46678999999999    99999988      48999999654210       00                 01268999


Q ss_pred             HHHHHhhccCCCCCc-ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCC
Q 005958          143 VLKKLVRRRLMYHSY-SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSI  221 (667)
Q Consensus       143 iL~~L~~~~~~~Hpn-Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~  221 (667)
                      .|+.|.     .|-. +.+.+         +.+..++||| ++.+..|.+.-+-.                         
T Consensus       163 fmkaL~-----e~gfpVPkpi---------D~~RH~Vvme-lv~g~Pl~~v~~v~-------------------------  202 (465)
T KOG2268|consen  163 FMKALY-----ERGFPVPKPI---------DHNRHCVVME-LVDGYPLRQVRHVE-------------------------  202 (465)
T ss_pred             HHHHHH-----HcCCCCCCcc---------cccceeeHHH-hhcccceeeeeecC-------------------------
Confidence            999986     2322 22222         5567899999 99886766543211                         


Q ss_pred             CCCCccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC
Q 005958          222 GGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED  285 (667)
Q Consensus       222 ~~~~~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~  285 (667)
                                .+..+...+..-+--|-.+|+||+|..-=||++.. ++.++++||--+......
T Consensus       203 ----------d~~~ly~~lm~~Iv~la~~GlIHgDFNEFNimv~d-d~~i~vIDFPQmvS~sh~  255 (465)
T KOG2268|consen  203 ----------DPPTLYDDLMGLIVRLANHGLIHGDFNEFNIMVKD-DDKIVVIDFPQMVSTSHP  255 (465)
T ss_pred             ----------ChHHHHHHHHHHHHHHHHcCceecccchheeEEec-CCCEEEeechHhhccCCC
Confidence                      13346666777777888999999999999999998 899999999766544433

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=97.31  E-value=0.0037  Score=63.37  Aligned_cols=76  Identities=14%  Similarity=0.197  Sum_probs=48.4

Q ss_pred             EeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhH-HHHHHHHHHHHHHhhccCCCCCcceEEEEEEEecc
Q 005958           91 LDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQ-RRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHT  169 (667)
Q Consensus        91 ~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~-~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~  169 (667)
                      ++.|..|-..    .+|++.....    .++.|++|+....... -...+|+.+++.+.     .+.-+.++++...   
T Consensus         3 i~~l~gG~tN----~~~~v~~~~~----~~~~~vlR~~~~~~~~~~d~~~E~~~~~~l~-----~~gl~P~v~~~~~---   66 (235)
T cd05157           3 FKRFTGGITN----KLVKVSNKED----NQDAVLVRVYGNKTELIIDRERELRIHKLLS-----KHGLAPKLYATFQ---   66 (235)
T ss_pred             EEEcCCcccc----eEEEEEcCCC----CCCeEEEEEccCCccceecHHHHHHHHHHHH-----hCCCCCeEEEEeC---
Confidence            4667778888    9998865410    1468999976542111 12357999999996     2333455554432   


Q ss_pred             cCCCCeEEEEEccCCCCCCH
Q 005958          170 TSGRSLFTLVHGQYHGSFSL  189 (667)
Q Consensus       170 ~~~~~~~~lVmE~~~~~GsL  189 (667)
                        .    .+||| |++|.++
T Consensus        67 --~----~~l~e-~i~G~~l   79 (235)
T cd05157          67 --N----GLIYE-FIPGRTL   79 (235)
T ss_pred             --C----cEEEE-eeCCCcC
Confidence              1    37999 9888655

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=97.17  E-value=0.0033  Score=66.49  Aligned_cols=81  Identities=19%  Similarity=0.239  Sum_probs=49.8

Q ss_pred             EeEeccCCCCCCCceEEEEEEcCC-CCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEec
Q 005958           91 LDRVSIGLSGRADEVVFEAIVKDS-NSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSH  168 (667)
Q Consensus        91 ~~~LG~G~fG~~~~~Vy~a~~~~~-~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~  168 (667)
                      ++.|..|-..    .||++..... .....++.|++|+..... ......+|..+++.+..     +--..++++++.  
T Consensus         3 i~~l~gGltN----~~y~v~~~~~~~~~~~~~~~vlRi~~~~~~~~~~r~~E~~~~~~l~~-----~g~~P~~~~~~~--   71 (302)
T cd05156           3 VSKISGGLTN----AVYKVSLPDEDALSDEPRKVLLRVYGQSVELLIDRERELVVFARLSE-----RNLGPKLYGIFP--   71 (302)
T ss_pred             EEEecCcccc----eeEEEEcCCcccccCCCCeEEEEEecCCCcceechHHHHHHHHHHHh-----CCCCCceEEEeC--
Confidence            3556667667    8998875420 001136889999976532 22345789999999972     222345555543  


Q ss_pred             ccCCCCeEEEEEccCCCCCCHH
Q 005958          169 TTSGRSLFTLVHGQYHGSFSLR  190 (667)
Q Consensus       169 ~~~~~~~~~lVmE~~~~~GsL~  190 (667)
                         +    .+|+| |++|..+.
T Consensus        72 ---~----~~v~e-~i~G~~l~   85 (302)
T cd05156          72 ---N----GRIEE-FIPSRTLT   85 (302)
T ss_pred             ---C----Cchhh-eeCCCcCC
Confidence               2    25899 88886654

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>TIGR02721 ycfN_thiK thiamine kinase

Probab=97.04  E-value=0.0068  Score=62.56  Aligned_cols=27  Identities=19%  Similarity=0.228  Sum_probs=24.1

Q ss_pred             CCcccCCCCCcEEEcCCCCeEEEeeeccc
Q 005958          251 GLAHTELRLENVHISPVDRHIKVGILGNA  279 (667)
Q Consensus       251 gIvHrDLKPeNILl~~~~~~vKL~DFGlA  279 (667)
                      .++|+|+.|.||+++. ++ +.|+||..|
T Consensus       147 ~l~H~Dl~~~Nil~~~-~~-~~lIDwE~a  173 (256)
T TIGR02721       147 APLHMDVHAYNLVVTP-QG-LKLIDWEYA  173 (256)
T ss_pred             eeecCCCCcCcEEEeC-CC-CEEEecccc
Confidence            5899999999999997 55 789999887

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>PRK10593 hypothetical protein; Provisional

Probab=97.04  E-value=0.009  Score=63.43  Aligned_cols=85  Identities=11%  Similarity=-0.003  Sum_probs=58.0

Q ss_pred             eEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEe
Q 005958           88 FKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSS  167 (667)
Q Consensus        88 y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~  167 (667)
                      ..-.+.||.|..+    .||......      + .+.+|..+.......+.+|...|+.|.....   -.+.++++++..
T Consensus        16 ~~~~~~i~~G~~~----~vy~~~~~~------~-~~~~k~~~~~~~~~~~~~Ea~~L~~L~~~~~---vpVP~V~~~~~~   81 (297)
T PRK10593         16 LSRVECISEQPYA----ALWALYDSQ------G-NPMPLMARSFSTPGVAQQEAWKLSMLARSGT---VRMPTVYGVMTH   81 (297)
T ss_pred             hheeeecCCccce----eEEEEEcCC------C-CEEEEEecccccchHHHHHHHHHHHHccCCC---CCcCcEEEEecc
Confidence            3446789999999    999986543      3 4777875432234578999999999962211   345667766642


Q ss_pred             cccCCCCeEEEEEccCCCCCCH
Q 005958          168 HTTSGRSLFTLVHGQYHGSFSL  189 (667)
Q Consensus       168 ~~~~~~~~~~lVmE~~~~~GsL  189 (667)
                      .  ...+..+|||| +++++++
T Consensus        82 ~--~~~g~~~LVmE-~i~G~~~  100 (297)
T PRK10593         82 E--QSPGPDVLLLE-RLRGVSV  100 (297)
T ss_pred             C--CcCCCeEEEEe-ccCCEec
Confidence            1  13466899999 9998665

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=96.94  E-value=0.0072  Score=64.87  Aligned_cols=141  Identities=16%  Similarity=0.199  Sum_probs=93.9

Q ss_pred             EEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhH-------------------H-----HHHHHH
Q 005958           90 ILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQ-------------------R-----RGRRAI  141 (667)
Q Consensus        90 i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~-------------------~-----~~~rEi  141 (667)
                      +-..|..|--+    -||.|...      .|..+|||+++..    .+.                   +     -+..|+
T Consensus       148 inGCiSTGKEA----NVYHat~~------dG~~~AIKIYKTSILvFKDRdRYV~GEfRFRhgyck~NPRKMVk~WAEKE~  217 (520)
T KOG2270|consen  148 INGCISTGKEA----NVYHATEE------DGSEFAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKHNPRKMVKTWAEKEM  217 (520)
T ss_pred             cccccccCccc----eeEeeecC------CCceEEEEEEeeeEEEEechhhhccceeeeecccccCCcHHHHHHHHHHHH
Confidence            45677788888    99999887      4888999998741    110                   1     126788


Q ss_pred             HHHHHHhhccCCCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCC
Q 005958          142 EVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSI  221 (667)
Q Consensus       142 ~iL~~L~~~~~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~  221 (667)
                      .-|+++.... +..|--+-+            ....|||+ |++. +        +|....-....|+            
T Consensus       218 RNLkRl~~aG-IP~PePIlL------------k~hVLVM~-FlGr-d--------gw~aPkLKd~~ls------------  262 (520)
T KOG2270|consen  218 RNLKRLNNAG-IPCPEPILL------------KNHVLVME-FLGR-D--------GWAAPKLKDASLS------------  262 (520)
T ss_pred             HHHHHHHhcC-CCCCCceee------------ecceEeee-eccC-C--------CCcCcccccccCC------------
Confidence            8899885221 233322211            24578999 8875 2        2222211122333            


Q ss_pred             CCCCccccHHHHHHHHHHHHHHHHHH-HHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC
Q 005958          222 GGPAASRQLRLIRLLMRDLLIGVNYL-HSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED  285 (667)
Q Consensus       222 ~~~~~~~~~~~i~~i~~QIl~aL~yL-Hs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~  285 (667)
                              ...++.+-.|++.-+.-| |..++||.||.-=|+|+.  +|.+.|+|-+-+.....+
T Consensus       263 --------~~ka~~~Y~~~v~~MR~lY~~c~LVHADLSEfN~Lyh--dG~lyiIDVSQSVE~DHP  317 (520)
T KOG2270|consen  263 --------TSKARELYQQCVRIMRRLYQKCRLVHADLSEFNLLYH--DGKLYIIDVSQSVEHDHP  317 (520)
T ss_pred             --------hHHHHHHHHHHHHHHHHHHHHhceeccchhhhhheEE--CCEEEEEEccccccCCCh
Confidence                    345667788888888777 456999999999999999  599999999988655443

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=96.93  E-value=0.0018  Score=64.05  Aligned_cols=103  Identities=16%  Similarity=0.019  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHhhccCCCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcC
Q 005958          138 RRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVG  217 (667)
Q Consensus       138 ~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~  217 (667)
                      ..|.-+|+.+.     +.+++.+++|++-         .++|+| |.+.+++......            +.        
T Consensus         7 ~~E~lll~~l~-----~~~~~pk~lG~CG---------~~~v~E-~~~~~~~~~~~~~------------l~--------   51 (188)
T PF12260_consen    7 NNEPLLLQLLQ-----GSEPFPKLLGSCG---------RFYVVE-YVGAGSLYGIYRP------------LS--------   51 (188)
T ss_pred             ccHHHHHHHcC-----CCCCCCCeeeECC---------CEEEEE-eecCccccccccc------------cc--------
Confidence            45888999997     4569999999874         366889 8887666432000            00        


Q ss_pred             CCCCCCCCccccHHHHHHHHHHHHHHHHHHHH---CCCcccCCCCCcEEEcCCCCeEEEeeecccccc
Q 005958          218 DDSIGGPAASRQLRLIRLLMRDLLIGVNYLHS---HGLAHTELRLENVHISPVDRHIKVGILGNAADF  282 (667)
Q Consensus       218 ~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs---~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~  282 (667)
                            .....++.....|+.++++.+.+|+.   ..+.-.|++|+|+-+++ ++++|++|...+...
T Consensus        52 ------~~~~~~w~~R~~iA~~lL~~l~~l~~~~~~~~~lcDv~~~nfgv~~-~~~lk~iDld~v~~~  112 (188)
T PF12260_consen   52 ------QFLQSPWEQRAKIALQLLELLEELDHGPLGFFYLCDVSPDNFGVND-DGRLKLIDLDDVFVE  112 (188)
T ss_pred             ------cccccCHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecchHHeEEeC-CCcEEEEechhcchh
Confidence                  00011245667899999999999987   35777999999999998 899999999887544

Proteins in this uncharacterised family are described as transmembrane proteins.

>PRK05231 homoserine kinase; Provisional

Probab=96.79  E-value=0.021  Score=60.92  Aligned_cols=81  Identities=10%  Similarity=0.001  Sum_probs=49.0

Q ss_pred             EeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEE-EEEEecc
Q 005958           91 LDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH-GYVSSHT  169 (667)
Q Consensus        91 ~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~-~~~~~~~  169 (667)
                      .+.|+.|...    .+|.....       +..+++|+.. ....+.+..|+.++..|... .+..|.++.-. +....  
T Consensus        27 ~~~l~~G~~n----~~y~v~t~-------~g~~vLK~~~-~~~~~~l~~~~~~l~~L~~~-glpvP~~i~~~~G~~~~--   91 (319)
T PRK05231         27 LKGIAEGIEN----SNFFLTTT-------QGEYVLTLFE-RLTAEDLPFFLGLMQHLAAR-GVPVPAPVARRDGAALG--   91 (319)
T ss_pred             cchhcccccc----ceEEEEeC-------CCcEEEEEec-cCChHHhHHHHHHHHHHHHC-CCCCCcceeCCCCCEee--
Confidence            4566777777    89988754       2368999876 22345566788889888632 23344443211 00000  


Q ss_pred             cCCCCeEEEEEccCCCCCC
Q 005958          170 TSGRSLFTLVHGQYHGSFS  188 (667)
Q Consensus       170 ~~~~~~~~lVmE~~~~~Gs  188 (667)
                       ...+..++++| |++|..
T Consensus        92 -~~~g~~~~l~~-~l~G~~  108 (319)
T PRK05231         92 -ELAGKPAAIVT-FLEGKW  108 (319)
T ss_pred             -eeCCEEEEEEE-ecCCCC
Confidence             13456789999 998853

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=96.77  E-value=0.014  Score=63.19  Aligned_cols=84  Identities=13%  Similarity=0.130  Sum_probs=54.9

Q ss_pred             EeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---------hhHHHHHHHHHHHHHHhhccCCCCC-cceEEE
Q 005958           93 RVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---------QAQRRGRRAIEVLKKLVRRRLMYHS-YSMQVH  162 (667)
Q Consensus        93 ~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---------~~~~~~~rEi~iL~~L~~~~~~~Hp-nIv~l~  162 (667)
                      .||.|.-.    .||++....     .++.|+||.-...         -..++...|.+.|+.....    -| .+.++|
T Consensus         2 EigdGnlN----~VfrV~~~~-----g~~svIVKQAlp~vRv~g~~wpl~~~R~~~E~~~L~~~~~~----~P~~vP~vy   68 (370)
T TIGR01767         2 EVGDGNLN----LVFHVYDQE-----GDRAAIVKQALPYVRVVGESWPLTLDRARIESSALIRQGEH----VPHLVPRIF   68 (370)
T ss_pred             cCCCCceE----EEEEEEcCC-----CCeeEEEEEcCHHHhhcCCCCCCCccHHHHHHHHHHHhhcc----CccccCeEE
Confidence            57889888    999999753     3468999976531         1124457788888877521    23 566666


Q ss_pred             EEEEecccCCCCeEEEEEccCCC-CCCHHHHHHhcC
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHG-SFSLRHWLQQAD  197 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~-~GsL~~~i~~~~  197 (667)
                      .+       +.....+||| +++ ...|.+.+.+..
T Consensus        69 ~~-------D~e~~~~vME-dL~~~~ilR~~Li~g~   96 (370)
T TIGR01767        69 HF-------DTEMAVTVME-DLSHHKIARKGLIEGE   96 (370)
T ss_pred             EE-------ccccceehHh-hCccchHHHHHHHcCC
Confidence            55       4566789999 664 445556665543

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=96.62  E-value=0.0051  Score=68.39  Aligned_cols=171  Identities=18%  Similarity=0.123  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHhhccCCCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhh
Q 005958          136 RGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRK  215 (667)
Q Consensus       136 ~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~  215 (667)
                      .+.--.++++.+.      |+|..+++++-...    .....+||| +++. +|.++++.+.          +.      
T Consensus        28 ~ilgr~~~lktl~------~~~l~~yl~~~r~~----~~r~IVV~e-~~~~-Sled~~~~~~----------l~------   79 (725)
T KOG1093|consen   28 QILGRFQYLKSLQ------HDNLCQYLDFSRGK----HERVIVVME-HYTM-SLEDILKTGN----------LK------   79 (725)
T ss_pred             HHhhhhHHHHhhc------CccceeeEeeecCc----cceEEEEeh-hhcc-chHHHHHhcc----------cc------
Confidence            3445567777774      99999999887632    334899999 9998 9999988753          00      


Q ss_pred             cCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCCCCCCCcccc
Q 005958          216 VGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNSSPDSN  295 (667)
Q Consensus       216 ~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~~~Y~APE~l  295 (667)
                                           ..+++       .+|+.|     -|        .++++| -++       ..|  |-  
T Consensus        80 ---------------------~~s~~-------~~~~~~-----~~--------~~~~td-~~~-------t~~--~~--  106 (725)
T KOG1093|consen   80 ---------------------DESLL-------AHGVLH-----LN--------IIYITD-HFL-------TKY--PS--  106 (725)
T ss_pred             ---------------------hhhhc-------ccccce-----eh--------hhhccc-ccc-------ccC--CC--
Confidence                                 01111       222222     22        233333 010       111  11  


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHhCCCCChhhh--hhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHH
Q 005958          296 MDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIF--TKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAG  373 (667)
Q Consensus       296 ~~~~~ys~ksDIWSLGviLyemltG~~PF~~~~--~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~  373 (667)
                          ..++|+||||+|.++.|+..|...++...  ...+.....+..+..+.......            .+.-.++...
T Consensus       107 ----~~~pKsdVwsl~~i~~el~L~~~l~~~~~~s~~l~~i~k~~~~d~~~~~~a~e~------------~~~~~~d~~~  170 (725)
T KOG1093|consen  107 ----PIGPKSDVWSLGFIILELYLGISLEAELTESEYLEILLKYYTDDQELLSTAMEH------------LIQLLADKKR  170 (725)
T ss_pred             ----CCCcchhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCchhHHHHHHHH------------HHHHhhhHhH
Confidence                12259999999999999999987776422  12222222333332221111100            0111244577


Q ss_pred             HHHHHHhhhcCcCCCCCHHHHHcCCCCCCC
Q 005958          374 WNLLSLLLATKPSKRISCLDALRHPFLCGP  403 (667)
Q Consensus       374 ~dLI~~~L~~DP~kRpSa~elL~HPwf~~~  403 (667)
                      .+++.+|+-..|..||...++.+|+-|.+.
T Consensus       171 ~~~~~~c~~~~~~ir~l~~~~~k~~i~~ev  200 (725)
T KOG1093|consen  171 LPLLKKCLWLEPIIRPLPMELSKRCSFTEV  200 (725)
T ss_pred             HHHhccCCccccccccchhHHhcCccHHHH
Confidence            899999999999999999999999999876

>PRK12396 5-methylribose kinase; Reviewed

Probab=96.36  E-value=0.048  Score=59.96  Aligned_cols=166  Identities=17%  Similarity=0.131  Sum_probs=95.2

Q ss_pred             EeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--------hhHHHHHHHHHHHHHHhhccCCCCC-cceEE
Q 005958           91 LDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--------QAQRRGRRAIEVLKKLVRRRLMYHS-YSMQV  161 (667)
Q Consensus        91 ~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--------~~~~~~~rEi~iL~~L~~~~~~~Hp-nIv~l  161 (667)
                      .+.||.|.-.    -||++.+..     .++.|+||.-...        -..++...|.++|+.+...    -| ++.++
T Consensus        34 ~~eigdGnlN----~VfrV~~~~-----~~~svIVKQAlp~vRv~~swpL~~~R~~~E~~aL~~~~~~----~P~~VP~v  100 (409)
T PRK12396         34 CKEIGDGNLN----YVFRVWDEQ-----KNISVIVKQAGDTARISDEFKLSTNRIRIESDVLQLEEEL----APGLVPKV  100 (409)
T ss_pred             eeEcCCCceE----EEEEEeeCC-----CCceEEEEeccHhhccCCCCCCChHHHHHHHHHHHHHHhh----CCCcCCeE
Confidence            6788999999    999999853     3567999975431        1235567899999987521    33 56667


Q ss_pred             EEEEEecccCCCCeEEEEEccCCC-CCCHHHHHHhcCCCccccc--------c------------------cCCCHHHHh
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHG-SFSLRHWLQQADWLPTLEA--------T------------------LALDEESVR  214 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~-~GsL~~~i~~~~~~~~l~~--------~------------------~~l~E~~a~  214 (667)
                      |.+       +.....+||| +++ ...|++.+.+....|.+..        +                  ..+...+.+
T Consensus       101 y~~-------D~e~~~~vME-dL~~~~ilR~~Li~G~~~p~~A~~ig~fla~tlf~tSd~~l~~~~kk~~v~~f~N~eLc  172 (409)
T PRK12396        101 YLF-------DSVMNCCVME-DLSDHTILRTALINHEIFPRLADDLTTFLVNTLLLTSDVVMNHKEKKELVKNYINPELC  172 (409)
T ss_pred             EEE-------CcHHhhHHHH-hCcccHHHHHHHHcCCcChhHHHHHHHHHHHHHhhcchhccChHHHHHhhHhcCCHHHH
Confidence            665       5577889999 764 3446666555443332111        0                  112333444


Q ss_pred             hcCCCCCCCCC----------ccccHHHH-HHH-----HHHHHHHHHH--H-HHCCCcccCCCCCcEEEcCCCCeEEEee
Q 005958          215 KVGDDSIGGPA----------ASRQLRLI-RLL-----MRDLLIGVNY--L-HSHGLAHTELRLENVHISPVDRHIKVGI  275 (667)
Q Consensus       215 ~~~~~~~~~~~----------~~~~~~~i-~~i-----~~QIl~aL~y--L-Hs~gIvHrDLKPeNILl~~~~~~vKL~D  275 (667)
                      +.+++....-+          .+.....+ +.+     ++.-+..|.+  + +...++|+||.|.|||+++  ..+|++|
T Consensus       173 ~itedlvft~Py~~~~~~n~~~~~~~~~~~~~l~~D~~Lk~ev~~Lk~~F~~~~~aLlHGDlHtGSI~v~~--~~~kvID  250 (409)
T PRK12396        173 EITEDLVYAEPFTNHNKRNELFPLNEGWIREHIYSDKELRLEVAKLKFSFMTNAQALIHGDLHTGSVFVKN--DSTKVID  250 (409)
T ss_pred             HHhcccccccCcccchhccCCCChhhHHHHHHHhcCHHHHHHHHHHHHHHHhcchhhccCcCCCCCEEecC--CceEEEc
Confidence            44443222111          11111111 111     0111112222  2 2346999999999999996  5699999


Q ss_pred             eccc
Q 005958          276 LGNA  279 (667)
Q Consensus       276 FGlA  279 (667)
                      .-+|
T Consensus       251 pEFA  254 (409)
T PRK12396        251 PEFA  254 (409)
T ss_pred             cccc
Confidence            7766

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=96.30  E-value=0.046  Score=57.41  Aligned_cols=39  Identities=21%  Similarity=0.071  Sum_probs=28.9

Q ss_pred             eEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhh
Q 005958          105 VVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVR  149 (667)
Q Consensus       105 ~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~  149 (667)
                      .|+.....      .|..+++|.-+.......+.+|..+|+.|..
T Consensus        26 ~v~~i~~~------~g~~~VlR~p~~~~~~~~l~rE~~vL~~L~~   64 (276)
T cd05152          26 QVVFAKDT------DGVPWVLRIPRRPDVSERAAAEKRVLALVRK   64 (276)
T ss_pred             EEEEEEcC------CCCeEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence            55655333      4788999998765556678999999999973

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>PLN02236 choline kinase

Probab=96.27  E-value=0.046  Score=59.30  Aligned_cols=79  Identities=13%  Similarity=0.058  Sum_probs=47.3

Q ss_pred             EeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-HHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEecc
Q 005958           91 LDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-QRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHT  169 (667)
Q Consensus        91 ~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~  169 (667)
                      +..|-.|-..    .+|++..... ....++.|++|+...... .-+..+|..+++.+.     .+.--.++++.+.   
T Consensus        41 i~~l~gGlTN----~~y~v~~~~~-~~~~~~~~v~Ri~g~~t~~~idR~~E~~~~~~l~-----~~gl~P~~~~~~~---  107 (344)
T PLN02236         41 VIPLKGAMTN----EVFQIKWPTK-EGNLGRKVLVRIYGEGVELFFDRDDEIRTFECMS-----RHGQGPRLLGRFP---  107 (344)
T ss_pred             EEEcCCcccc----eeEEEEeCCC-CCCCCCeEEEEEccCCCCeeechHHHHHHHHHHH-----HcCCCCceEEEEC---
Confidence            3455447777    8999875421 111357899998754321 111267999999997     3333445666654   


Q ss_pred             cCCCCeEEEEEccCCCCCCH
Q 005958          170 TSGRSLFTLVHGQYHGSFSL  189 (667)
Q Consensus       170 ~~~~~~~~lVmE~~~~~GsL  189 (667)
                        .+    .|.| |+++.+|
T Consensus       108 --~g----~v~e-fi~g~~l  120 (344)
T PLN02236        108 --NG----RVEE-FIHARTL  120 (344)
T ss_pred             --Cc----eEEE-eeCCCCC
Confidence              22    4788 7777555

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=96.18  E-value=0.048  Score=58.75  Aligned_cols=28  Identities=14%  Similarity=0.147  Sum_probs=25.1

Q ss_pred             CcccCCCCCcEEEcCCCCeEEEeeeccc
Q 005958          252 LAHTELRLENVHISPVDRHIKVGILGNA  279 (667)
Q Consensus       252 IvHrDLKPeNILl~~~~~~vKL~DFGlA  279 (667)
                      ++|.|+.+.|||++++++.++++||..|
T Consensus       184 ~CHnDl~~~NiL~~~~~~~l~lID~EYa  211 (330)
T PLN02421        184 FAHNDLLSGNLMLNEDEGKLYFIDFEYG  211 (330)
T ss_pred             EEECCCCcccEEEeCCCCcEEEEccccc
Confidence            7999999999999864678999999877

>PRK06148 hypothetical protein; Provisional

Probab=95.85  E-value=0.12  Score=63.94  Aligned_cols=87  Identities=7%  Similarity=0.021  Sum_probs=52.3

Q ss_pred             EeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhc-cCCCCCcceEEE-----EE
Q 005958           91 LDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRR-RLMYHSYSMQVH-----GY  164 (667)
Q Consensus        91 ~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~-~~~~HpnIv~l~-----~~  164 (667)
                      .+.|+. ..-    .+|+....      ++..|++|+.+..........|..+|..|... ..+.-|.++.-.     ..
T Consensus        30 ~~~L~s-~~d----~nf~v~~~------~g~~yVLKi~~~~~~~~~~~~q~~~L~hL~~~~~glpvP~~i~t~~G~~~~~   98 (1013)
T PRK06148         30 ATPLDG-ERD----LNFRLTTD------DGADYILKIVNPSEPRVESDFQTAALDHLAAVAPDLPVPRLIPSLSGASLAS   98 (1013)
T ss_pred             EeecCC-cCC----ceEEEEeC------CCCeEEEEEcCCccchhHHHHHHHHHHHHHhhCCCCCcCeeeecCCCCeEEE
Confidence            356653 345    78988754      47789999998755555566778888888632 123334444322     11


Q ss_pred             EEecccCCCCeEEEEEccCCCCCCHHH
Q 005958          165 VSSHTTSGRSLFTLVHGQYHGSFSLRH  191 (667)
Q Consensus       165 ~~~~~~~~~~~~~lVmE~~~~~GsL~~  191 (667)
                      ....  +.....+-+++ |.+|..|.+
T Consensus        99 v~~~--~G~~~~vrLl~-~l~G~~l~~  122 (1013)
T PRK06148         99 AQDP--DGEPRLLRLLS-WLPGTPLAE  122 (1013)
T ss_pred             eecC--CCceEEEEEEe-ccCCCcHHh
Confidence            1110  12225778899 999866654

>PLN02756 S-methyl-5-thioribose kinase

Probab=95.32  E-value=0.16  Score=56.13  Aligned_cols=83  Identities=16%  Similarity=0.153  Sum_probs=54.3

Q ss_pred             EEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcc-----hh----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           90 ILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS-----VQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        90 i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~-----~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ..+.||.|...    .||+..+.       ++.|+||.-..     ..    ...+...|.+.|+.+...   ...++.+
T Consensus        36 ~~~eiggGn~N----~VyrV~~~-------~~svVVKqa~p~~r~vga~wpl~~~R~~~Ea~aL~~~~~~---~p~~VPk  101 (418)
T PLN02756         36 KIKEVGDGNLN----FVYIVVSS-------SGSFVIKQALPYIRCIGESWPMTKERAYFEATALREHGRL---CPDHVPE  101 (418)
T ss_pred             eEEEcCCCcee----eEEEEEcC-------CccEEEEeCCccccCCCccccCCccHHHHHHHHHHHhhhc---CCCCCCe
Confidence            46788999999    99998763       34589998652     11    234456677777776421   1246778


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCC--CCHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGS--FSLRHWLQ  194 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~--GsL~~~i~  194 (667)
                      ++.+..       +..+++|| ++++  ..|.+.+.
T Consensus       102 Vy~~de-------d~~vlvME-~L~~~~~ilr~~Ll  129 (418)
T PLN02756        102 VYHFDR-------TMALIGMR-YLEPPHIILRKGLI  129 (418)
T ss_pred             EEEECC-------CCCEEEEe-ecCCcceehhhhhc
Confidence            887754       45688899 8876  34554443

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=94.83  E-value=0.091  Score=52.54  Aligned_cols=30  Identities=23%  Similarity=0.263  Sum_probs=20.1

Q ss_pred             CCcccCCCCCcEEEcCCCCeEEEeeecccc
Q 005958          251 GLAHTELRLENVHISPVDRHIKVGILGNAA  280 (667)
Q Consensus       251 gIvHrDLKPeNILl~~~~~~vKL~DFGlA~  280 (667)
                      .++|.||.|.|||++..++.++|+||..|.
T Consensus       144 v~cHnDl~~~Nil~~~~~~~~~lIDfEya~  173 (211)
T PF01633_consen  144 VFCHNDLNPGNILINNKDGEVKLIDFEYAG  173 (211)
T ss_dssp             EEE-S--SGGGEEETSSSSCEEE--GTT-E
T ss_pred             eEeeccCccccEEeccCCCeEEEecHHHHh
Confidence            589999999999993338999999998773

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>PRK11768 serine/threonine protein kinase; Provisional

Probab=94.51  E-value=0.77  Score=49.34  Aligned_cols=71  Identities=8%  Similarity=0.031  Sum_probs=43.0

Q ss_pred             eEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcceEEEE--EEEecccCCCCeEEEEEc
Q 005958          105 VVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG--YVSSHTTSGRSLFTLVHG  181 (667)
Q Consensus       105 ~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~--~~~~~~~~~~~~~~lVmE  181 (667)
                      .||+....      .+..+++|+.+... ....+..|++++..|.... +.-+-.+..-+  ...     .++..+.+++
T Consensus        40 ~vy~v~~~------~~~~~vlKv~r~~~~~~~~i~~E~~~l~~L~~~g-ipv~~p~~~~G~~~~~-----~~g~~~~l~~  107 (325)
T PRK11768         40 RVYQFGDE------DGRRVVAKFYRPERWSDAQILEEHAFALELAEAE-IPVVAPLAFNGQTLHE-----HQGFRFALFP  107 (325)
T ss_pred             eEEEEecC------CCCEEEEEEcCcccCCHHHHHHHHHHHHHHHHCC-CCCCCCccCCCCEEEE-----ECCEEEEEEe
Confidence            69998765      36789999876432 4456778999999986321 11111111111  111     2456788999


Q ss_pred             cCCCCCC
Q 005958          182 QYHGSFS  188 (667)
Q Consensus       182 ~~~~~Gs  188 (667)
                       +++|..
T Consensus       108 -~~~G~~  113 (325)
T PRK11768        108 -RRGGRA  113 (325)
T ss_pred             -eeCCCC
Confidence             888743

>KOG1236 consensus Predicted unusual protein kinase [General function prediction only]

Probab=93.98  E-value=0.14  Score=55.94  Aligned_cols=134  Identities=15%  Similarity=0.170  Sum_probs=76.2

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCC----------CCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSN----------SPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~----------~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ..||.|+-.    .||+|..+...          .....+.+|||+.++. ..+++.+...||....     .-+|+|.-
T Consensus       195 ~PIGsG~IA----QVY~atl~~a~lekd~~~~~~~~~~tq~~AiKv~Hp~-V~~~ir~Dl~Il~f~A-----kl~~~vP~  264 (565)
T KOG1236|consen  195 EPIGSGCIA----QVYRATLKTAYLEKDSGKEYVQKLGTQSCAIKVLHPN-VEKQIRLDLGILGFGA-----KLINNVPD  264 (565)
T ss_pred             cccccchhh----hhhhhhhhHHHhhcccchhhhcCCccceeeeeccCcc-HHHHHHHHHHHHhhhh-----hhhhhcCc
Confidence            568999999    99999855321          1234578999998864 3334444444444433     11222211


Q ss_pred             EEEEE-----------------------------------------ecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCc
Q 005958          162 HGYVS-----------------------------------------SHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLP  200 (667)
Q Consensus       162 ~~~~~-----------------------------------------~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~  200 (667)
                      ..|..                                         .+...-.....|+=+ |..|-++..+++...   
T Consensus       265 l~wL~l~~~vkqF~v~ln~QvdL~~EA~hL~rF~~NF~~s~~V~fP~P~~~~~~~~vl~E~-~~~Gl~v~~~v~~~~---  340 (565)
T KOG1236|consen  265 LSWLSLPLEVKQFSVGLNAQVDLRQEALHLPRFTNNFSGSKKVLFPKPIAPLHTDLVLVET-YERGLSVLRFVKWKS---  340 (565)
T ss_pred             cccccCcchHHHHHHHHHhhcchhhhhhhhHHHHHhcccceeecCCcccccccccceeeee-ccccccHHhhhhccc---
Confidence            11111                                         000012223445555 888888888887543   


Q ss_pred             ccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHH-HHCCCcccCCCCCcEEEcC
Q 005958          201 TLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYL-HSHGLAHTELRLENVHISP  266 (667)
Q Consensus       201 ~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yL-Hs~gIvHrDLKPeNILl~~  266 (667)
                             ..|                    ...+.++.-.+.|+--+ --.+.+|.|+.|.||++..
T Consensus       341 -------~pe--------------------~l~kkva~lg~~AllkMl~vDNFvHaDlHPGNVlirf  380 (565)
T KOG1236|consen  341 -------QPE--------------------ALVKKVAKLGVNALLKMLIVDNFVHADLHPGNVLIRF  380 (565)
T ss_pred             -------ChH--------------------HHHHHHHHHHHHHHHHHHHhhcceecccCCCcEEEEe
Confidence                   111                    23444555555555443 3468999999999999975

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=93.56  E-value=0.44  Score=51.38  Aligned_cols=74  Identities=12%  Similarity=0.082  Sum_probs=46.4

Q ss_pred             eEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccC-CCCCcceEEEEEEEecccCCC--CeEEEEEc
Q 005958          105 VVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRL-MYHSYSMQVHGYVSSHTTSGR--SLFTLVHG  181 (667)
Q Consensus       105 ~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~-~~HpnIv~l~~~~~~~~~~~~--~~~~lVmE  181 (667)
                      .||+.....      ++ +++|+........++.-|+..|..|..... +.-| |...=|-....   -.  ...+-+++
T Consensus        40 ~~f~~~~~~------g~-~iLki~~~~~~~~~i~~el~~l~~La~~~i~v~~P-l~~~dG~~l~~---~~~~~r~a~lf~  108 (331)
T COG2334          40 SNFRVQTED------GR-YILKIYRPGWTRAEIPFELALLQHLAERGIPVPAP-LPSLDGELLEA---LSGGPRPAALFE  108 (331)
T ss_pred             ceEEEEecC------CC-eEEEEecCCCCHHHHHHHHHHHHHHHHcCCCCCCC-ccCCCcchhhh---ccCCceeEEEEE
Confidence            689888774      34 499999876556678889999999973211 1112 22222222111   22  37788899


Q ss_pred             cCCCCCCHH
Q 005958          182 QYHGSFSLR  190 (667)
Q Consensus       182 ~~~~~GsL~  190 (667)
                       |++|..+.
T Consensus       109 -~l~G~~~~  116 (331)
T COG2334         109 -YLPGRPLE  116 (331)
T ss_pred             -ecCCcCcC
Confidence             99986665

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=93.29  E-value=0.7  Score=48.91  Aligned_cols=79  Identities=11%  Similarity=-0.057  Sum_probs=48.4

Q ss_pred             eEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEe
Q 005958           88 FKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSS  167 (667)
Q Consensus        88 y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~  167 (667)
                      .+-.+.|+-|...    .+|+..  .     +++.+.||+-. ......+..|.+-|+.|...   .--.+.+++++.. 
T Consensus        19 i~~~~~v~GG~i~----~a~~~~--~-----~~~~~FvK~~~-~~~~~~f~~Ea~gL~~L~~~---~~~~vP~vi~~G~-   82 (288)
T PF03881_consen   19 ITSIEPVSGGDIN----EAYRLD--T-----DGGSYFVKVNS-ESGRDMFEGEAEGLKALAEA---NPIRVPKVIAWGE-   82 (288)
T ss_dssp             --EEEEE--SSSS----EEEEEE--T-----TS-EEEEEEEE-GGGCCHHHHHHHHHHHHCHT---TTSBS--EEEEEE-
T ss_pred             eeeeEecCCCChh----heEEEE--C-----CCccEEEEecC-hhhHHHHHHHHHHHHHHHhc---CCCCCCeEEEEEe-
Confidence            3456778888888    888877  3     57899999976 33445678899999999532   2345668888776 


Q ss_pred             cccCCCCeEEEEEccCCCCC
Q 005958          168 HTTSGRSLFTLVHGQYHGSF  187 (667)
Q Consensus       168 ~~~~~~~~~~lVmE~~~~~G  187 (667)
                          ..+..||||| |++.+
T Consensus        83 ----~~~~~fLlle-~l~~~   97 (288)
T PF03881_consen   83 ----YDDDAFLLLE-FLEMG   97 (288)
T ss_dssp             -----SSCCEEEEE------
T ss_pred             ----ecCCceEEEE-eecCC
Confidence                4455599999 98875

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>PRK06149 hypothetical protein; Provisional

Probab=92.85  E-value=1.8  Score=53.59  Aligned_cols=74  Identities=15%  Similarity=0.090  Sum_probs=44.6

Q ss_pred             eEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhc-cCCCCCcceEE-----EEEEEecccCCCCeEEE
Q 005958          105 VVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRR-RLMYHSYSMQV-----HGYVSSHTTSGRSLFTL  178 (667)
Q Consensus       105 ~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~-~~~~HpnIv~l-----~~~~~~~~~~~~~~~~l  178 (667)
                      .+|+....       +..|++|+.+.......+..|..++..|... ..+.-|.+++-     +.....   .+....+-
T Consensus        45 ~nf~v~t~-------~~~yVLKi~~~~~~~~~l~~e~~~l~hL~~~~~glpvp~pi~t~~G~~~~~~~~---~g~~~~vr  114 (972)
T PRK06149         45 RNFRVDSD-------GGRFVLKICHAAYAAVELEAQHAALRHLAEREPALRVPVVIPALDGEELLTLDV---RGQGLRVR  114 (972)
T ss_pred             ceEEEEec-------CCcEEEEeCCccCChHHHHHHHHHHHHHHhhCCCCCCceeeECCCCCeEEEEec---CCceEEEE
Confidence            57877643       3478999988654556678888899988632 12333444431     111111   13456788


Q ss_pred             EEccCCCCCCH
Q 005958          179 VHGQYHGSFSL  189 (667)
Q Consensus       179 VmE~~~~~GsL  189 (667)
                      +++ |++|..+
T Consensus       115 L~~-~l~G~~~  124 (972)
T PRK06149        115 LLD-YLPGQPL  124 (972)
T ss_pred             EEE-ecCCccc
Confidence            999 9988444

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=92.60  E-value=0.78  Score=49.20  Aligned_cols=30  Identities=30%  Similarity=0.193  Sum_probs=26.2

Q ss_pred             CCcccCCCCCcEEEcCCCCeEEEeeeccccc
Q 005958          251 GLAHTELRLENVHISPVDRHIKVGILGNAAD  281 (667)
Q Consensus       251 gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~  281 (667)
                      .++|+|+++.||+++. ++-+=|.||+++..
T Consensus       199 ~lvHGD~~~gNlii~~-~~~~gVlDwe~~~l  228 (321)
T COG3173         199 VLVHGDYRPGNLIIDP-GRPTGVLDWELATL  228 (321)
T ss_pred             eeeeCCcccCCEEEeC-CCeeEEEecccccc
Confidence            4899999999999998 66699999999843

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=92.44  E-value=0.31  Score=52.76  Aligned_cols=76  Identities=14%  Similarity=0.151  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHC-CCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-CCCC---CcccccCCCCCCchh
Q 005958          231 RLIRLLMRDLLIGVNYLHSH-GLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-PNNS---SPDSNMDRRQMMIAF  305 (667)
Q Consensus       231 ~~i~~i~~QIl~aL~yLHs~-gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-~~Y~---APE~l~~~~~ys~ks  305 (667)
                      .++..|+.+-+.-+.-+..+ ..-|||+.-.||||+  +|+|.|+||-+|+.-.... ..|.   -|-.+.+.  -+...
T Consensus       321 ~e~lsff~s~~sil~~lekkf~fehrnlt~~niLId--~GnvtLIDfklsRl~~~q~~isy~rldhp~lF~G~--dd~QF  396 (488)
T COG5072         321 EEELSFFWSCISILDILEKKFPFEHRNLTLDNILID--EGNVTLIDFKLSRLSYSQGIISYNRLDHPDLFNGV--DDYQF  396 (488)
T ss_pred             HHHHHHHHHHHHHHhhhhhcCCcccccccccceeee--cCceEEEEeeeeecccCCceeeccccCchhhhcCc--cceee
Confidence            34566777777766666554 689999999999999  5999999999998433332 3332   45533332  25666


Q ss_pred             hHHHH
Q 005958          306 DMRCV  310 (667)
Q Consensus       306 DIWSL  310 (667)
                      |||-+
T Consensus       397 eIYrl  401 (488)
T COG5072         397 EIYRL  401 (488)
T ss_pred             eHHHH
Confidence            77654

>PTZ00384 choline kinase; Provisional

Probab=92.29  E-value=1.4  Score=48.57  Aligned_cols=84  Identities=11%  Similarity=0.182  Sum_probs=47.8

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCC-CCCCCcEEEEEEEcch-hhHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSN-SPLHNTKVVLRQLISV-QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~-~~~tg~~vAvK~i~~~-~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      +..++ +.|..|-..    .+|++...... .....+.|.++..... ...-+..+|+++++.+.     .+..-.++++
T Consensus        51 ~~i~i-~~l~gGLTN----~l~~v~~~~~~~~~~~~k~Vl~R~~g~~~~l~IdR~~E~~i~~~Ls-----~~glgP~l~~  120 (383)
T PTZ00384         51 EFIEI-KKMNNGITN----QVYQATLVDGDKDRYPIKSVCIKKSSTYNSLVIDNDLQYNIAKLLG-----DNNFGPKIIG  120 (383)
T ss_pred             ccEEE-EEeCCcccc----eEEEEEecCCCCCccccceEEEEeccCCCceEeccHHHHHHHHHHH-----hCCCCCeEEE
Confidence            34444 455457777    89999764311 0001122444442111 00112267999999997     4556667777


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSL  189 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL  189 (667)
                      .+.     .    ++|.| |++|-.|
T Consensus       121 ~f~-----~----g~l~e-fIeGr~l  136 (383)
T PTZ00384        121 RFG-----D----FTIQE-WVEGNTM  136 (383)
T ss_pred             ecC-----C----EEEEE-EeccccC
Confidence            765     2    58999 8888554

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=91.73  E-value=0.3  Score=51.62  Aligned_cols=28  Identities=14%  Similarity=0.280  Sum_probs=24.7

Q ss_pred             CCCcccCCCCCcEEEcCCCCeEEEeeeccc
Q 005958          250 HGLAHTELRLENVHISPVDRHIKVGILGNA  279 (667)
Q Consensus       250 ~gIvHrDLKPeNILl~~~~~~vKL~DFGlA  279 (667)
                      .+++|+|+.+.||+++.  +.+.|+||+.+
T Consensus       187 ~~liHgD~~~~Nil~~~--~~i~lIDfd~~  214 (313)
T TIGR02906       187 RGFCHQDYAYHNILLKD--NEVYVIDFDYC  214 (313)
T ss_pred             CceEcCCCCcccEEEeC--CcEEEEECccc
Confidence            47999999999999986  56889999976

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>PTZ00296 choline kinase; Provisional

Probab=89.06  E-value=3.2  Score=46.68  Aligned_cols=82  Identities=17%  Similarity=0.174  Sum_probs=47.7

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCC---CCCCCcEEEEEEEcchhh-HHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSN---SPLHNTKVVLRQLISVQA-QRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~---~~~tg~~vAvK~i~~~~~-~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ++. -++.|..|-.-    .+|++......   .+..++.|.+++.-.... --...+|..+++.+..     +---.++
T Consensus       106 ~~I-~i~~l~gGlTN----~~f~v~~~~~~~~~~~~~~~~~lvRiyG~~te~lIdR~~E~~v~~~ls~-----~gi~P~l  175 (442)
T PTZ00296        106 DDV-RVNQILSGLTN----QLFEVSLKEETANNYPSIRRRVLFRIYGKDVDELYNPISEFEVYKTMSK-----YRIAPQL  175 (442)
T ss_pred             ccE-EEEEecCcccC----ceEEEEecCCCCccccCcCceEEEEecCCCccceeCHHHHHHHHHHHHH-----CCCCCce
Confidence            344 45666667777    89998765311   111357899998754211 1123678899998862     2222355


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCC
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSF  187 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~G  187 (667)
                      ++.+.      +   +.|.| |++|-
T Consensus       176 ~~~f~------g---g~I~e-fi~g~  191 (442)
T PTZ00296        176 LNTFS------G---GRIEE-WLYGD  191 (442)
T ss_pred             EEEeC------C---CEEEE-eeCCc
Confidence            66553      2   34678 88774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	667
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	4e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	2e-06
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	2e-06
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	2e-06
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	3e-06
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	8e-06
3niz_A	311	Rhodanese family protein; structural genomics, str	8e-06
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	9e-06
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	1e-05
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	2e-05
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	2e-05
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	2e-05
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	2e-05
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	2e-05
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	3e-05
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	3e-05
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	3e-05
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	4e-05
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	1e-04
3o0g_A	292	Cell division protein kinase 5; kinase activator c	1e-04
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	1e-04
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	2e-04
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	2e-04
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	3e-04
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	3e-04
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	4e-04
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	5e-04
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	6e-04
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	7e-04
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	8e-04

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 64.3 bits (156), Expect = 4e-11
 Identities = 51/377 (13%), Positives = 106/377 (28%), Gaps = 42/377 (11%)

Query: 43  QRRSSAIQCSSSRKVVSEESVQNEASVSVDDESDSGHVIRFNMGDFKILDRVSIGLSGRA 102
            R  +  + ++  + V+       A  +VD     G          K+++ + +G     
Sbjct: 25  CREEALKEPAAMVEAVTATVWPQNAETTVDSLLSQGER------KLKLVEPLRVGDRS-- 76

Query: 103 DEVVFEAIVKDSNSPLHNTKVV-LRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQV 161
             VVF     +        KV  +    S     R   A     +L+           ++
Sbjct: 77  --VVFLVRDVERLEDF-ALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRL 133

Query: 162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSI 221
                +     +  F  +           + L     +P     L L   ++  V     
Sbjct: 134 LLPSDAVAVQSQPPFAQLSPGQDDYAVANYLL----LMPAASVDLELLFSTLDFVYVFRG 189

Query: 222 GGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAAD 281
                +       +L   L+     L S GL H     +N+ I P D  + +G +     
Sbjct: 190 DEGILAL-----HILTAQLIRLAANLQSKGLVHGHFTPDNLFIMP-DGRLMLGDVSALWK 243

Query: 282 FYED-----GPNNSSPDSNMDRRQMMI--AFDMRCVGFMMAKMVLRELMDPLIFTKFKSF 334
                     P   +P   ++        A +   +G  + ++    L     F      
Sbjct: 244 VGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLP----F------ 293

Query: 335 LTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDA 394
              G+    ++    +   R   + +  F            L+   L     +R+  L+A
Sbjct: 294 ---GLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEA 350

Query: 395 LRHPFLCGPRWRVDPSI 411
           +  P     +  +  S+
Sbjct: 351 METPEFLQLQNEISSSL 367

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 4e-09
 Identities = 72/514 (14%), Positives = 144/514 (28%), Gaps = 157/514 (30%)

Query: 2   ALCGIGLSQTLEGIDKWCLGGNFSTRLMVHRHFN----WKTSARAQRRSSAIQ-----C- 51
            + G+       G  K  +  +      V    +    W          + ++       
Sbjct: 154 LIDGVL------GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 52  -----------SSSRKVVSEESVQNEAS------------VSVDDESDSGHVIRFNMG-- 86
                       SS   +   S+Q E              + + +  ++     FN+   
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267

Query: 87  ------DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLH--NTKVVLRQLISV------- 131
                   ++ D +S               +   +  L     K +L + +         
Sbjct: 268 ILLTTRFKQVTDFLSAA-------TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 132 QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTL---VHGQYHGSFS 188
           +      R + ++ + +R  L        V       T    SL  L    + +     S
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHV-NCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

Query: 189 LRHWLQQADWLPTLEATLAL-----DEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG 243
           +      +  +P     L+L      +  V  V +          +L    L+ +     
Sbjct: 380 V---FPPSAHIP--TILLSLIWFDVIKSDVMVVVN----------KLHKYSLVEKQPKES 424

Query: 244 VNYLHSHGLAHTELRLEN-----VHISPVDRHIKVGILGNAADFYEDGPNNSSPDSNMDR 298
              + S    + EL+++      +H S VD +       N    ++   ++  P      
Sbjct: 425 TISIPSI---YLELKVKLENEYALHRSIVDHY-------NIPKTFD--SDDLIPPYL--- 469

Query: 299 RQMMIAFDM---RCVGFMMAKMVLRELMD--PLIFTKFKSFLTKGIDPSCLREFLLQVLN 353
                  D      +G  +  +   E M    ++F  F+ FL + I              
Sbjct: 470 -------DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR-FLEQKI-------------- 507

Query: 354 RNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC---------LDALRHPFL--CG 402
           R+ S+           W A  ++L+ L   K  K   C         ++A+   FL    
Sbjct: 508 RHDST----------AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD-FLPKIE 556

Query: 403 PRWRVDPSIDMIRWGLGSSAVRITEEYIYRQPQR 436
                    D++R  L +    I EE  ++Q QR
Sbjct: 557 ENLICSKYTDLLRIALMAEDEAIFEE-AHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 6e-06
 Identities = 52/379 (13%), Positives = 97/379 (25%), Gaps = 137/379 (36%)

Query: 106 VFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKL-VRRRLMYHS-----YSM 159
           +   I  +   P   T++       ++ + R     +V  K  V R   Y         +
Sbjct: 94  LMSPIKTEQRQPSMMTRMY------IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147

Query: 160 QVHGYVSSH--TTSGRSLFTLV-----HGQYHGSFSLR-HWL-----QQADWLPTLEATL 206
           +    V       SG++   +        +       +  WL        + +  +   L
Sbjct: 148 RPAKNVLIDGVLGSGKT--WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205

Query: 207 ALDEESVRKVGDD---SIGGPAASRQLRLIRLLM-----RDLLIGVNYLHSHGLAHTELR 258
               +       D   +I     S Q  L RLL        LL+                
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV---------------- 249

Query: 259 LENVHISPVDRHIKVGILGNAADFYEDGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMV 318
           L NV  +   +                                  AF++ C      K+ 
Sbjct: 250 LLNVQNA---KAWN-------------------------------AFNLSC------KI- 268

Query: 319 LRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLS 378
                  L+ T+FK  +T  +  +      L     + S   T  ++          LL 
Sbjct: 269 -------LLTTRFKQ-VTDFLSAATTTHISLD----HHSMTLTPDEVKS--------LLL 308

Query: 379 LLLATKPSK--RISCLDALRHPF---LCGPRWRVDPSIDMIRWGLGSSAVRITEEYIYRQ 433
             L  +P    R        +P    +     R   +     W           +  ++ 
Sbjct: 309 KYLDCRPQDLPREVL---TTNPRRLSIIAESIRDGLA----TW-----------DN-WKH 349

Query: 434 PQRARLAYFVEL-MEMLNP 451
               +L   +E  + +L P
Sbjct: 350 VNCDKLTTIIESSLNVLEP 368

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 49.4 bits (119), Expect = 2e-06
 Identities = 41/201 (20%), Positives = 75/201 (37%), Gaps = 47/201 (23%)

Query: 230 LRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADF-----YE 284
               +  +  LL G+ Y H   + H +L+ +N+ I+  +  +K+      ADF     + 
Sbjct: 99  SVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINR-EGELKI------ADFGLARAFG 151

Query: 285 DGPNNS-----------SPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPL------- 326
             P              +PD  M  ++     D+  VG + A+MV      PL       
Sbjct: 152 I-PVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGT---PLFPGVSEA 207

Query: 327 --IFTKFKSFLT------KGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLS 378
             +   F+   T        +  + L ++             +  + LD    +G +LLS
Sbjct: 208 DQLMRIFRILGTPNSKNWPNV--TELPKYDPNFTVYEPLPWESFLKGLDE---SGIDLLS 262

Query: 379 LLLATKPSKRISCLDALRHPF 399
            +L   P++RI+   AL H +
Sbjct: 263 KMLKLDPNQRITAKQALEHAY 283

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 38/196 (19%), Positives = 74/196 (37%), Gaps = 32/196 (16%)

Query: 233 IRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNS-- 290
           IR  M ++L  ++Y HS G+ H +++  NV I    R +++   G  A+FY  G   +  
Sbjct: 132 IRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWG-LAEFYHPGQEYNVR 190

Query: 291 -------SPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPL------------IFT-- 329
                   P+  +D +    + DM  +G M+A M+ R+  +P             I    
Sbjct: 191 VASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRK--EPFFHGHDNYDQLVRIAKVL 248

Query: 330 ---KFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWG--AGWNLLSLLLATK 384
                  ++ K  +      F   +   +           +++       + L  LL   
Sbjct: 249 GTEDLYDYIDK-YNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYD 307

Query: 385 PSKRISCLDALRHPFL 400
              R++  +A+ HP+ 
Sbjct: 308 HQSRLTAREAMEHPYF 323

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 50/333 (15%), Positives = 126/333 (37%), Gaps = 66/333 (19%)

Query: 105 VVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGY 164
           +V E    +S       +  L++++  Q  R   R ++++      +++ H   +++  Y
Sbjct: 22  IVCEVFDIESG-----KRFALKKVL--QDPRYKNRELDIM------KVLDHVNIIKLVDY 68

Query: 165 VSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEAT-----LALD--EESVRKVG 217
             +                               +    +      + ++   +++ KV 
Sbjct: 69  FYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPDTLHKV- 127

Query: 218 DDSIGGPAASRQ---LRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVG 274
              +     S +   + LI + +  L   V ++HS G+ H +++ +N+ ++  D  +K+ 
Sbjct: 128 ---LKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSLGICHRDIKPQNLLVNSKDNTLKLC 184

Query: 275 ILGNAADFYEDGPNNS--------SPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPL 326
             G+A       P+ +        +P+  +   +   + D+  +G +  +++L +   PL
Sbjct: 185 DFGSAKKLIPSEPSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGK---PL 241

Query: 327 IFTKF--KSF---LTKGID----PSCLREFLLQVLNRNSSSGNTGF-QILDRNWG----- 371
               F  ++    L + I     P+  +E ++++   N       F  +  ++W      
Sbjct: 242 ----FSGETSIDQLVRIIQIMGTPT--KEQMIRM---NPHYTEVRFPTLKAKDWRKILPE 292

Query: 372 ----AGWNLLSLLLATKPSKRISCLDALRHPFL 400
                  +LL  +L  +P  RI+  +A+ HPF 
Sbjct: 293 GTPSLAIDLLEQILRYEPDLRINPYEAMAHPFF 325

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 47.4 bits (113), Expect = 8e-06
 Identities = 41/223 (18%), Positives = 71/223 (31%), Gaps = 67/223 (30%)

Query: 230 LRLIRLLMRDLLIGVNYLHSH-GLAHTELRLENVHISPVDR-----HIKVGILGNAAD-- 281
           L  ++ + + LL+G++Y+H   G+ HT+++ ENV +  VD       IK+  LGNA    
Sbjct: 130 LIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYD 189

Query: 282 ----------FY---E------------------------------DGPNNSSPDSNMDR 298
                      Y   E                              +     S   + D 
Sbjct: 190 EHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDD- 248

Query: 299 RQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFL-TKGIDPSCLREFLLQVLNRNSS 357
               IA  +  +G + + ++         F           +    L + L +    +  
Sbjct: 249 ---HIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKD 305

Query: 358 SGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFL 400
                 +I D         LS +L   P KR      + HP+L
Sbjct: 306 EAK---EISD--------FLSPMLQLDPRKRADAGGLVNHPWL 337

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 47.2 bits (113), Expect = 8e-06
 Identities = 47/212 (22%), Positives = 83/212 (39%), Gaps = 52/212 (24%)

Query: 232 LIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADF-----YEDG 286
            I++ +  LL GV + H H + H +L+ +N+ I+  D  +K+      ADF     +   
Sbjct: 120 QIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINS-DGALKL------ADFGLARAFGI- 171

Query: 287 PNNS-----------SPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPL--------- 326
           P  S           +PD  M  ++   + D+  +G + A+M+  +   PL         
Sbjct: 172 PVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGK---PLFPGVTDDDQ 228

Query: 327 IFTKFKSFLT------KGIDPSCLREFLLQVLNRNSSSG-NTGFQILDRNWGAGWNLLSL 379
           +   F    T        +    L  +  +          ++      +    G +LLS 
Sbjct: 229 LPKIFSILGTPNPREWPQV--QELPLWKQRTFQVFEKKPWSSIIPGFCQ---EGIDLLSN 283

Query: 380 LLATKPSKRISCLDALRHPFLCGPRWRVDPSI 411
           +L   P+KRIS  DA+ HP+       +DP I
Sbjct: 284 MLCFDPNKRISARDAMNHPYF----KDLDPQI 311

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 47.2 bits (113), Expect = 9e-06
 Identities = 35/208 (16%), Positives = 72/208 (34%), Gaps = 35/208 (16%)

Query: 232 LIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNS- 290
           +++  +  ++ G+ + HSH + H +++ EN+ +S     +K+   G A      G     
Sbjct: 125 VVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQ-SGVVKLCDFGFARTLAAPGEVYDD 183

Query: 291 --------SPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPL---------IFTKFKS 333
                   +P+  +   +   A D+  +G ++ +M + E   PL         ++     
Sbjct: 184 EVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGE---PLFPGDSDIDQLYHIMMC 240

Query: 334 F--LTKGIDP--SCLREF----LLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKP 385
              L        +    F    L ++  R        +  L        +L    L   P
Sbjct: 241 LGNLIPRHQELFNKNPVFAGVRLPEIKEREPLE--RRYPKLSE---VVIDLAKKCLHIDP 295

Query: 386 SKRISCLDALRHPFLCGPRWRVDPSIDM 413
            KR  C + L H F     +    S ++
Sbjct: 296 DKRPFCAELLHHDFFQMDGFAERFSQEL 323

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 42/204 (20%), Positives = 78/204 (38%), Gaps = 51/204 (25%)

Query: 232 LIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDR----HIKVGILGNAADF----- 282
           +I+  +  L+ GVN+ HS    H +L+ +N+ +S  D      +K+       DF     
Sbjct: 133 VIKSFLYQLINGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKI------GDFGLARA 186

Query: 283 YEDGPNNS-----------SPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPL----- 326
           +   P               P+  +  R    + D+  +  + A+M+++    PL     
Sbjct: 187 FGI-PIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKT---PLFPGDS 242

Query: 327 ----IFTKFKSFLT------KGIDPSCLREFLLQVLNRNSSS-GNTGFQILDRNWGAGWN 375
               +F  F+           G+  + L ++          +       +LD     G +
Sbjct: 243 EIDQLFKIFEVLGLPDDTTWPGV--TALPDWKQSFPKFRGKTLKRVLGALLDD---EGLD 297

Query: 376 LLSLLLATKPSKRISCLDALRHPF 399
           LL+ +L   P KRIS  +AL HP+
Sbjct: 298 LLTAMLEMDPVKRISAKNALEHPY 321

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 43/198 (21%), Positives = 78/198 (39%), Gaps = 43/198 (21%)

Query: 232 LIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNS- 290
            ++L M  L   + Y+HS G+ H +++ +N+ + P    +K+   G+A       PN S 
Sbjct: 157 YVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSY 216

Query: 291 -------SPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGID--- 340
                  +P+          + D+   G ++A+++L +   P+    F      G+D   
Sbjct: 217 ICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQ---PI----FPG--DSGVDQLV 267

Query: 341 --------PSCLREFLLQVLNRNSSSGNTGF-QILDRNWG---------AGWNLLSLLLA 382
                   P+  RE + ++   N +     F QI    W              L S LL 
Sbjct: 268 EIIKVLGTPT--REQIREM---NPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLE 322

Query: 383 TKPSKRISCLDALRHPFL 400
             P+ R++ L+A  H F 
Sbjct: 323 YTPTARLTPLEACAHSFF 340

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 55/417 (13%), Positives = 108/417 (25%), Gaps = 140/417 (33%)

Query: 31  HRHFNWKTSARAQRRSSAIQCSSSRKVVSEESVQNEASVSVDDESDSGHVIRFNMGDFKI 90
           H H +  +    +        ++  +    +S            S +   I      + I
Sbjct: 1   HHHHHHSSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKASSSANECISVKGRIYSI 60

Query: 91  LDRVSIGLSGRADEVVFEAIVKDSNSPLHNT------KVVLRQLISVQAQRRGRRAIEVL 144
           L ++  G S +    VF+         L+        K V  +    Q     R  I  L
Sbjct: 61  LKQIGSGGSSK----VFQV--------LNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYL 108

Query: 145 KKLVRRRLMYHSYS--MQVHGYVSSHTT-------SGRSLFTLVHGQYHGSFSLRHWLQQ 195
            KL             ++++ Y  +              L + +  +   S         
Sbjct: 109 NKL------QQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWL--KKKKSIDPW----- 155

Query: 196 ADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHT 255
                                                 +   +++L  V+ +H HG+ H+
Sbjct: 156 ------------------------------------ERKSYWKNMLEAVHTIHQHGIVHS 179

Query: 256 ELRLENVHISPVDRHIKVGILGNAADFYEDG-----------PNNSSP------DSNMDR 298
           +L+  N  I  VD  +K+   G A     D             N   P       S+ + 
Sbjct: 180 DLKPANFLI--VDGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSREN 237

Query: 299 RQMMIAFDMRC----VGFMMAKMV--------LRELMDPL---IFTKFKSFLTKGIDPSC 343
            +       +     +G ++  M         +   +  L   I    +       +   
Sbjct: 238 GKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDL 297

Query: 344 LREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFL 400
            ++ L   L R+                             P +RIS  + L HP++
Sbjct: 298 -QDVLKCCLKRD-----------------------------PKQRISIPELLAHPYV 324

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 45/212 (21%), Positives = 73/212 (34%), Gaps = 68/212 (32%)

Query: 232 LIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG----- 286
           L++     LL G+ + H + + H +L+ +N+ I+     +K+       DF   G     
Sbjct: 109 LVKYFQWQLLQGLAFCHENKILHRDLKPQNLLINK-RGQLKL------GDF---GLARAF 158

Query: 287 --PNNS-----------SPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPL------- 326
             P N+           +PD  M  R    + D+   G ++A+M+  +   PL       
Sbjct: 159 GIPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGK---PLFPGTNDE 215

Query: 327 -----IF--------------TKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILD 367
                IF              TK   +             L QVL  ++         LD
Sbjct: 216 EQLKLIFDIMGTPNESLWPSVTKLPKY--NPNIQQRPPRDLRQVLQPHTKEP------LD 267

Query: 368 RNWGAGWNLLSLLLATKPSKRISCLDALRHPF 399
                  + L  LL   P  R+S   AL HP+
Sbjct: 268 G---NLMDFLHGLLQLNPDMRLSAKQALHHPW 296

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 51/200 (25%), Positives = 83/200 (41%), Gaps = 47/200 (23%)

Query: 232 LIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNS- 290
           LI+L M  LL  + Y+HS G+ H +++ +N+ + P    +K+   G+A       PN S 
Sbjct: 142 LIKLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGEPNVSY 201

Query: 291 -------SPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKF--KSFLTKGID- 340
                  +P+            D+   G +MA+++  +   PL    F  +S    GID 
Sbjct: 202 ICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQ---PL----FPGES----GIDQ 250

Query: 341 ----------PSCLREFLLQVLNRNSSSGNTGF-QILDRNWG---------AGWNLLSLL 380
                     PS  RE +  +   N +     F QI    +             +L+S L
Sbjct: 251 LVEIIKVLGTPS--REQIKTM---NPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRL 305

Query: 381 LATKPSKRISCLDALRHPFL 400
           L   PS R++ ++AL HPF 
Sbjct: 306 LEYTPSARLTAIEALCHPFF 325

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 31/204 (15%), Positives = 59/204 (28%), Gaps = 70/204 (34%)

Query: 233 IRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNSSP 292
              L R +L  ++Y+HS G+ H +L+  N+ I    R++K+G  G A + +         
Sbjct: 118 YWRLFRQILEALSYIHSQGIIHRDLKPMNIFIDE-SRNVKIGDFGLAKNVHRSLDILKLD 176

Query: 293 DSNMDRRQMM---------------------------------IAFDMRCVGF---MMAK 316
             N+                                       I F+M    F   M   
Sbjct: 177 SQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEM-IYPFSTGMERV 235

Query: 317 MVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNL 376
            +L++L    I  +F             ++ +  +++ +                     
Sbjct: 236 NILKKLRSVSI--EFPPDFDDNKMKV-EKKIIRLLIDHD--------------------- 271

Query: 377 LSLLLATKPSKRISCLDALRHPFL 400
                   P+KR      L   +L
Sbjct: 272 --------PNKRPGARTLLNSGWL 287

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 44/195 (22%), Positives = 70/195 (35%), Gaps = 38/195 (19%)

Query: 232 LIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNS- 290
            ++L +  LL G+ Y H   + H +L+ +N+ I+     +K+   G A       P  + 
Sbjct: 101 NVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINE-RGELKLADFGLARAK--SIPTKTY 157

Query: 291 ----------SPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPL---------IFTKF 331
                      PD  +         DM  VG +  +M       PL         +   F
Sbjct: 158 DNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGR---PLFPGSTVEEQLHFIF 214

Query: 332 KSFLT------KGIDPSCLREFLLQVLNRNSSSG-NTGFQILDRNWGAGWNLLSLLLATK 384
           +   T       GI      EF      +  +    +    LD     G +LL+ LL  +
Sbjct: 215 RILGTPTEETWPGI--LSNEEFKTYNYPKYRAEALLSHAPRLDS---DGADLLTKLLQFE 269

Query: 385 PSKRISCLDALRHPF 399
              RIS  DA++HPF
Sbjct: 270 GRNRISAEDAMKHPF 284

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 24/224 (10%), Positives = 73/224 (32%), Gaps = 45/224 (20%)

Query: 59  SEESVQNEASVSVDDESDSGHVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPL 118
                 +  S   ++    GH++  +   +  + ++  G     D V      +  +   
Sbjct: 2   GSSHHHHHHSSGRENLYFQGHMVIIDNKHYLFIQKLGEGGFSYVDLV------EGLHD-- 53

Query: 119 HNTKVVLRQLI--SVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLF 176
                 L++++    Q +   +R  ++ +         H   +++  Y      +    +
Sbjct: 54  -GHFYALKRILCHEQQDREEAQREADMHRLF------NHPNILRLVAYCLRERGAKHEAW 106

Query: 177 TLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL 236
            L+   +    +L + +++       +    L E+ +  +                    
Sbjct: 107 LLL--PFFKRGTLWNEIERL-----KDKGNFLTEDQILWL-------------------- 139

Query: 237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAA 280
           +  +  G+  +H+ G AH +L+  N+ +   +    +  LG+  
Sbjct: 140 LLGICRGLEAIHAKGYAHRDLKPTNILLGD-EGQPVLMDLGSMN 182

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 37/211 (17%), Positives = 82/211 (38%), Gaps = 46/211 (21%)

Query: 232 LIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRH---IKVGILGNAADFYEDGPN 288
           +++ L+  +L G++YLH++ + H +L+  N+ +         +K+  +G A  F      
Sbjct: 129 MVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKP 188

Query: 289 NSSPDSN------------MDRRQMMIAFDMRCVGFMMAKMVLRELMDPL------IFTK 330
            +  D              +  R    A D+  +G + A+++  E   P+          
Sbjct: 189 LADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSE---PIFHCRQEDIKT 245

Query: 331 FKSFLTKGID--------P--------SCLREF--LLQVLNRNSSSGNTGFQILDRNWG- 371
              +    +D        P          + E   L++   RN+ +  +  + ++++   
Sbjct: 246 SNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVK 305

Query: 372 ---AGWNLLSLLLATKPSKRISCLDALRHPF 399
                ++LL  LL   P KRI+   A++ P+
Sbjct: 306 PDSKAFHLLQKLLTMDPIKRITSEQAMQDPY 336

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 45.2 bits (108), Expect = 4e-05
 Identities = 38/203 (18%), Positives = 64/203 (31%), Gaps = 53/203 (26%)

Query: 232 LIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNS- 290
           L++ +    L  VN+ H H   H +++ EN+ I+     IK+   G A            
Sbjct: 103 LVKSITWQTLQAVNFCHKHNCIHRDVKPENILITK-HSVIKLCDFGFARLLTGPSDYYDD 161

Query: 291 --------SPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPL---------------- 326
                   SP+  +   Q     D+  +G + A+++      PL                
Sbjct: 162 EVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGV---PLWPGKSDVDQLYLIRKT 218

Query: 327 ----------IFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNL 376
                     +F+  + F    I      E L       S         L         L
Sbjct: 219 LGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNISYPA------LG--------L 264

Query: 377 LSLLLATKPSKRISCLDALRHPF 399
           L   L   P++R++C   L HP+
Sbjct: 265 LKGCLHMDPTERLTCEQLLHHPY 287

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 30/190 (15%), Positives = 61/190 (32%), Gaps = 44/190 (23%)

Query: 231 RLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNS 290
            +   +   +   V +LHS GL H +L+  N+  +  D  +KVG  G          +  
Sbjct: 118 SVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTM-DDVVKVGDFGLVTAM-----DQD 171

Query: 291 SPDSNMDRRQMMIAFDMRCVG--FMMA-----------K-------MVLRELMDPLIFTK 330
             +  +       A     VG    M+           K       ++L EL+ P     
Sbjct: 172 EEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLYP----- 226

Query: 331 FKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS 390
              F T+       R   L  +            +  + +   + ++  +L+  P +R  
Sbjct: 227 ---FSTQ-----MERVRTLTDVRNLKFP-----PLFTQKYPCEYVMVQDMLSPSPMERPE 273

Query: 391 CLDALRHPFL 400
            ++ + +   
Sbjct: 274 AINIIENAVF 283

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 40/208 (19%), Positives = 69/208 (33%), Gaps = 64/208 (30%)

Query: 232 LIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNS- 290
           +++  +  LL G+ + HS  + H +L+ +N+ I+  +  +K+   G A  F    P    
Sbjct: 102 IVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINR-NGELKLANFGLARAF--GIPVRCY 158

Query: 291 ----------SPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPL------------IF 328
                      PD     +    + DM   G + A++       PL            IF
Sbjct: 159 SAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELA--NAGRPLFPGNDVDDQLKRIF 216

Query: 329 T-----------------KFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWG 371
                              +K +       + L                     L+    
Sbjct: 217 RLLGTPTEEQWPSMTKLPDYKPY-PMYPATTSLVNV---------------VPKLNA--- 257

Query: 372 AGWNLLSLLLATKPSKRISCLDALRHPF 399
            G +LL  LL   P +RIS  +AL+HP+
Sbjct: 258 TGRDLLQNLLKCNPVQRISAEEALQHPY 285

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 29/194 (14%), Positives = 56/194 (28%), Gaps = 41/194 (21%)

Query: 233 IRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADF-----YEDG- 286
           IR L+ D+   + YLH + + H +L+ EN+ + P  + +   I     D       + G 
Sbjct: 123 IRTLLSDISSALRYLHENRIIHRDLKPENIVLQPGPQRLIHKI----IDLGYAKELDQGE 178

Query: 287 --------PNNSSPDSNMDRRQM-----------MIAFDMRCVGFM-MAKMVLRELMDPL 326
                       +P+  +  ++             +AF+    GF               
Sbjct: 179 LCTEFVGTLQYLAPE--LLEQKKYTVTVDYWSFGTLAFECIT-GFRPFLPNWQPVQWHGK 235

Query: 327 IFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS 386
           +  K    +    D +   +F   +   N  S           W      L  +L     
Sbjct: 236 VREKSNEHIVVYDDLTGAVKFSSVLPTPNHLS--GILAGKLERW------LQCMLMWHQR 287

Query: 387 KRISCLDALRHPFL 400
           +R +          
Sbjct: 288 QRGTDPQNPNVGCF 301

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 38/209 (18%), Positives = 69/209 (33%), Gaps = 62/209 (29%)

Query: 233 IRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNSSP 292
           I+ +M+ LL G+ Y+H + + H +++  NV I+  D  +K+   G A  F     +  + 
Sbjct: 126 IKRVMQMLLNGLYYIHRNKILHRDMKAANVLITR-DGVLKLADFGLARAFSLAKNSQPNR 184

Query: 293 DSN-------------MDRRQMMIAFDMRCVGFMMAKMVLRELMDPL------------I 327
            +N             +  R      D+   G +MA+M  R    P+            I
Sbjct: 185 YTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRS---PIMQGNTEQHQLALI 241

Query: 328 F--------------TK---FKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNW 370
                               ++           +++ L   +                  
Sbjct: 242 SQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDP--------------- 286

Query: 371 GAGWNLLSLLLATKPSKRISCLDALRHPF 399
               +L+  LL   P++RI   DAL H F
Sbjct: 287 -YALDLIDKLLVLDPAQRIDSDDALNHDF 314

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 27/206 (13%), Positives = 56/206 (27%), Gaps = 76/206 (36%)

Query: 231 RLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNS 290
            +   +   +   V +LHS GL H +L+  N+  +  D  +KVG  G      +D    +
Sbjct: 164 GVCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTM-DDVVKVGDFGLVTAMDQDEEEQT 222

Query: 291 SPDSNMDRRQM------------------------------MIAFDMRCVGF---MMAKM 317
                                                    +I F++    F   M    
Sbjct: 223 VLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFEL-LYSFSTQMERVR 281

Query: 318 VLRELMD---PLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGW 374
           ++ ++ +   PL+FT+                                            
Sbjct: 282 IITDVRNLKFPLLFTQKYPQEHM------------------------------------- 304

Query: 375 NLLSLLLATKPSKRISCLDALRHPFL 400
            ++  +L+  P++R    D + +   
Sbjct: 305 -MVQDMLSPSPTERPEATDIIENAIF 329

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Length = 397

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 14/81 (17%), Positives = 34/81 (41%), Gaps = 1/81 (1%)

Query: 230 LRLIRLLMRDLLIGVNYLHSH-GLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPN 288
           L  ++ +++ +L G++YLH+   + HT+++ EN+ +S  +++I+              P 
Sbjct: 145 LPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPP 204

Query: 289 NSSPDSNMDRRQMMIAFDMRC 309
            S    +              
Sbjct: 205 PSGSAVSTAPATAGNFLVNPL 225

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 38/193 (19%), Positives = 69/193 (35%), Gaps = 30/193 (15%)

Query: 233 IRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNS-- 290
            RL M  LL G+ Y+HS  + H +L+  N+ I+  D  +K+G  G A        +    
Sbjct: 122 ARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKGHL 181

Query: 291 ----------SPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDP---------LIF--- 328
                     SP   +       A DM   G + A+M+  + +           LI    
Sbjct: 182 SEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILESI 241

Query: 329 -TKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK 387
               +    + +  S +  ++   +             + R      + L  +L   P  
Sbjct: 242 PVVHEEDRQE-LL-SVIPVYIRNDMTEPHKPLTQLLPGISRE---AVDFLEQILTFSPMD 296

Query: 388 RISCLDALRHPFL 400
           R++  +AL HP++
Sbjct: 297 RLTAEEALSHPYM 309

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 30/188 (15%), Positives = 60/188 (31%), Gaps = 27/188 (14%)

Query: 232 LIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNSS 291
            ++ L+  +  G+ Y+HS  L H +++  N+ IS           G+  D+  +      
Sbjct: 116 ELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKI 175

Query: 292 PDSNMDRRQMMIAFDMRCVG--FMMAKMVLRELMDPL----IFTKFKSF------LTKGI 339
            D     R   I+      G    +A  VL+E    L    IF    +            
Sbjct: 176 GDLGHVTR---ISSPQVEEGDSRFLANEVLQENYTHLPKADIF----ALALTVVCAAGAE 228

Query: 340 DPSCLREFLLQVLNRNSSSGNTGFQILDRNW-GAGWNLLSLLLATKPSKRISCLDALRHP 398
                 +     + +           + +        LL +++   P +R S +  ++H 
Sbjct: 229 PLPRNGD-QWHEIRQGR------LPRIPQVLSQEFTELLKVMIHPDPERRPSAMALVKHS 281

Query: 399 FLCGPRWR 406
            L     +
Sbjct: 282 VLLSASRK 289

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 34/234 (14%), Positives = 66/234 (28%), Gaps = 84/234 (35%)

Query: 64  QNEASVSVDDESDSGHVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNT-- 121
            + + V +  E+     +      + IL ++  G S +    VF+         L+    
Sbjct: 6   HHSSGVDLGTENLYFQSMSVKGRIYSILKQIGSGGSSK----VFQV--------LNEKKQ 53

Query: 122 ----KVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYS--MQVHGYVSSHTT----- 170
               K V  +    Q     R  I  L KL             ++++ Y  +        
Sbjct: 54  IYAIKYVNLEEADNQTLDSYRNEIAYLNKL------QQHSDKIIRLYDYEITDQYIYMVM 107

Query: 171 --SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASR 228
                 L + +  +   S                                          
Sbjct: 108 ECGNIDLNSWL--KKKKSIDPW-------------------------------------- 127

Query: 229 QLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADF 282
                +   +++L  V+ +H HG+ H++L+  N  I  VD  +K+       DF
Sbjct: 128 ---ERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLI--VDGMLKL------IDF 170

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 24/199 (12%), Positives = 58/199 (29%), Gaps = 41/199 (20%)

Query: 233 IRLLMRDLLIGVNYLHSHGLAHTELRLENV---HISPVDRHIKVGILGNAADFYEDGPNN 289
             +++RD++ G+N+L  +G+ H  ++  N+            K+   G A +  +D    
Sbjct: 114 FLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFV 173

Query: 290 S---SP--------DSNMDRRQMMIAFDMRC----VGFMMAKMV--------------LR 320
           S   +         +  + R+     +        +G                      +
Sbjct: 174 SLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNK 233

Query: 321 ELMDPLIFTKFKSFLTKG-IDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSL 379
           E+M  +I  K    ++      +   ++   +    S S      +          +L+ 
Sbjct: 234 EVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTP--------VLAN 285

Query: 380 LLATKPSKRISCLDALRHP 398
           +L     K           
Sbjct: 286 ILEADQEKCWGFDQFFAET 304

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 17/92 (18%), Positives = 40/92 (43%), Gaps = 13/92 (14%)

Query: 232 LIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNSS 291
            I  +++ +L  ++Y+H  G  H  ++  ++ IS  D  + +  L +            S
Sbjct: 129 AIAYILQGVLKALDYIHHMGYVHRSVKASHILISV-DGKVYLSGLRSNL----------S 177

Query: 292 PDSNMDRRQMMIAFDMRCVG--FMMAKMVLRE 321
             S+  R++++  F    V     ++  VL++
Sbjct: 178 MISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQ 209

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 30/184 (16%), Positives = 52/184 (28%), Gaps = 50/184 (27%)

Query: 233 IRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNS-- 290
           +   +RD L+ + +LHS GL H +++  N+ + P     K+G  G   +    G      
Sbjct: 159 VWGYLRDTLLALAHLHSQGLVHLDVKPANIFLGP-RGRCKLGDFGLLVELGTAGAGEVQE 217

Query: 291 ------SPDSNMDRRQMM--------IAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLT 336
                 +P+                    ++ C    +      E    L         T
Sbjct: 218 GDPRYMAPELLQGSYGTAADVFSLGLTILEVAC-NMELPHG--GEGWQQLRQGYLPPEFT 274

Query: 337 KGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALR 396
            G+    LR  L+ +L  +                             P  R +    L 
Sbjct: 275 AGLSSE-LRSVLVMMLEPD-----------------------------PKLRATAEALLA 304

Query: 397 HPFL 400
            P L
Sbjct: 305 LPVL 308

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	667
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
2dyl_A	318	Dual specificity mitogen-activated protein kinase	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	100.0
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	100.0
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3uqc_A	286	Probable conserved transmembrane protein; structur	100.0
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	100.0
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	100.0
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.97
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.9
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.88
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.79
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.67
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.28
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.16
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.87
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.78
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.41
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.35
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.32
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	98.05
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	97.95
3ats_A	357	Putative uncharacterized protein; hypothetical pro	97.8
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.75
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	97.69
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	97.43
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	97.27
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	97.23
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	97.04
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	96.89
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	96.87
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	96.85
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	96.68
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	96.62
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	96.59
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	96.34
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	96.13
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	95.9
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	95.43
3mes_A	424	Choline kinase; malaria, structural genomics, stru	94.58
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	91.51

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=1.4e-57  Score=480.84  Aligned_cols=252  Identities=17%  Similarity=0.271  Sum_probs=214.5

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      ...++|++++.||+|+||    +||+|+++.     +++.||||++.+..     ..+.+.+|+++|++|      +|||
T Consensus        29 ~~~~dy~i~~~lG~G~fg----~V~~a~~~~-----~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l------~Hpn   93 (311)
T 4aw0_A           29 KRPEDFKFGKILGEGSFS----TVVLARELA-----TSREYAIKILEKRHIIKENKVPYVTRERDVMSRL------DHPF   93 (311)
T ss_dssp             CCGGGEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTC------CCTT
T ss_pred             CCccccEEEEEEecccCe----EEEEEEECC-----CCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhC------CCCC
Confidence            345789999999999999    999999998     89999999997532     235678999999999      4999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      ||+++++|+     +.+.+||||| ||+||+|.++|++.+         .|+|.                    .++.|+
T Consensus        94 Iv~l~~~~~-----~~~~~yivmE-y~~gG~L~~~i~~~~---------~l~e~--------------------~~~~~~  138 (311)
T 4aw0_A           94 FVKLYFTFQ-----DDEKLYFGLS-YAKNGELLKYIRKIG---------SFDET--------------------CTRFYT  138 (311)
T ss_dssp             BCCEEEEEE-----CSSEEEEEEC-CCTTEEHHHHHHHHS---------SCCHH--------------------HHHHHH
T ss_pred             CCeEEEEEE-----eCCEEEEEEe-cCCCCCHHHHHHHcC---------CCCHH--------------------HHHHHH
Confidence            999999999     8899999999 999999999998765         67764                    467899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-----------CCCCCCCcccccCCCCCCchhh
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-----------DGPNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-----------~~~~Y~APE~l~~~~~ys~ksD  306 (667)
                      .||+.||+|||++||+||||||+|||++. ++++||+|||+|+.+..           +++.|||||++. +..|+.++|
T Consensus       139 ~qi~~al~ylH~~~IiHRDlKPeNILl~~-~g~vKl~DFGla~~~~~~~~~~~~~~~~GTp~YmAPEvl~-~~~y~~~~D  216 (311)
T 4aw0_A          139 AEIVSALEYLHGKGIIHRDLKPENILLNE-DMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLT-EKSACKSSD  216 (311)
T ss_dssp             HHHHHHHHHHHHTTEECSCCSGGGEEECT-TSCEEECCCTTCEECCTTTTCCCBCCCCSCGGGCCHHHHH-HSCBCHHHH
T ss_pred             HHHHHHHHHHHHCCCccCCCCHHHeEEcC-CCCEEEEEcCCceecCCCCCcccccCcccCcccCCHHHHc-CCCCCcHHH
Confidence            99999999999999999999999999998 89999999999987632           347899999654 556999999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          307 MRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       307 IWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      ||||||++|||++|++||.            +.+...+.   ..+....       +..+..+|+++++||.+||++||+
T Consensus       217 iWSlGvilyeml~G~~PF~------------~~~~~~~~---~~i~~~~-------~~~p~~~s~~~~dli~~lL~~dp~  274 (311)
T 4aw0_A          217 LWALGCIIYQLVAGLPPFR------------AGNEGLIF---AKIIKLE-------YDFPEKFFPKARDLVEKLLVLDAT  274 (311)
T ss_dssp             HHHHHHHHHHHHHSSCSSC------------CSSHHHHH---HHHHHTC-------CCCCTTCCHHHHHHHHHHSCSSGG
T ss_pred             HHHHHHHHHHHHhCCCCCC------------CCCHHHHH---HHHHcCC-------CCCCcccCHHHHHHHHHHccCCHh
Confidence            9999999999999999995            33333322   2333222       223457899999999999999999


Q ss_pred             CCCCHHH------HHcCCCCCCCCCCCC
Q 005958          387 KRISCLD------ALRHPFLCGPRWRVD  408 (667)
Q Consensus       387 kRpSa~e------lL~HPwf~~~~~~~~  408 (667)
                      +|||++|      +++||||++++|...
T Consensus       275 ~R~t~~e~~~~~~i~~Hp~F~~idw~~l  302 (311)
T 4aw0_A          275 KRLGCEEMEGYGPLKAHPFFESVTWENL  302 (311)
T ss_dssp             GSTTSGGGTCHHHHHTSGGGTTCCCTTG
T ss_pred             HCcChHHHcCCHHHHCCCCcCCCCHHHh
Confidence            9999987      689999999998654

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=6.9e-56  Score=474.58  Aligned_cols=247  Identities=17%  Similarity=0.243  Sum_probs=209.2

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--hHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      ..|+++++||+|+||    +||+|+++.     +|+.||||++....  ..+.+.+|+++|++++      |||||++++
T Consensus        74 ~~y~~~~~iG~G~fG----~V~~a~~~~-----tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~------HpnIV~l~~  138 (346)
T 4fih_A           74 SYLDNFIKIGEGSTG----IVCIATVRS-----SGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQ------HENVVEMYN  138 (346)
T ss_dssp             GTEEEEEEEEECSSC----EEEEEEETT-----TCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCC------CTTBCCEEE
T ss_pred             HhcEEeEEeecCcCe----EEEEEEECC-----CCCEEEEEEEecCchhHHHHHHHHHHHHHhCC------CCCCCcEEE
Confidence            569999999999999    999999998     89999999997532  3345789999999994      999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      +|.     +.+.+||||| ||+||+|.+++.+.          .++|+                    .++.|+.||+.|
T Consensus       139 ~~~-----~~~~~~ivmE-y~~gg~L~~~l~~~----------~l~e~--------------------~~~~~~~qi~~a  182 (346)
T 4fih_A          139 SYL-----VGDELWVVME-FLEGGALTDIVTHT----------RMNEE--------------------QIAAVCLAVLQA  182 (346)
T ss_dssp             EEE-----ETTEEEEEEC-CCTTEEHHHHHHHS----------CCCHH--------------------HHHHHHHHHHHH
T ss_pred             EEE-----ECCEEEEEEe-CCCCCcHHHHHHcC----------CCCHH--------------------HHHHHHHHHHHH
Confidence            999     7789999999 99999999999763          46664                    567899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      |+|||++|||||||||+|||++. ++++||+|||+|+.+...         ++.|||||++ ....|+.++||||||||+
T Consensus       183 L~ylH~~~IiHRDlKp~NILl~~-~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl-~~~~y~~~~DiWSlGvil  260 (346)
T 4fih_A          183 LSVLHAQGVIHRDIKSDSILLTH-DGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELI-SRLPYGPEVDIWSLGIMV  260 (346)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECT-TCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHH-TTCCBCTHHHHHHHHHHH
T ss_pred             HHHHHHCCcccccCCHHHEEECC-CCCEEEecCcCceecCCCCCcccccccCcCcCCHHHH-CCCCCCcHHHHHHHHHHH
Confidence            99999999999999999999998 899999999999876432         3789999954 556799999999999999


Q ss_pred             HHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHH
Q 005958          315 AKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDA  394 (667)
Q Consensus       315 yemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~el  394 (667)
                      |||++|++||.            +.+.......+.   ....+    .++.+..+++++++||.+||++||++|||++|+
T Consensus       261 yeml~G~~PF~------------~~~~~~~~~~i~---~~~~~----~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~  321 (346)
T 4fih_A          261 IEMVDGEPPYF------------NEPPLKAMKMIR---DNLPP----RLKNLHKVSPSLKGFLDRLLVRDPAQRATAAEL  321 (346)
T ss_dssp             HHHHHSSCTTT------------TSCHHHHHHHHH---HSSCC----CCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred             HHHHHCCCCCC------------CcCHHHHHHHHH---cCCCC----CCCccccCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence            99999999995            333333333222   22111    234456789999999999999999999999999


Q ss_pred             HcCCCCCCCC
Q 005958          395 LRHPFLCGPR  404 (667)
Q Consensus       395 L~HPwf~~~~  404 (667)
                      |+||||+...
T Consensus       322 l~Hp~~~~~~  331 (346)
T 4fih_A          322 LKHPFLAKAG  331 (346)
T ss_dssp             TTCGGGGGCC
T ss_pred             hcCHhhcCCC
Confidence            9999998754

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=1.2e-55  Score=459.32  Aligned_cols=245  Identities=20%  Similarity=0.298  Sum_probs=199.3

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      .+++|++++.||+|+||    +||+|+++.     +++.||||++.+..     ..+.+.+|+++|++++      ||||
T Consensus        11 ~ig~Y~i~~~lG~G~fg----~V~~~~~~~-----~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~------HpnI   75 (275)
T 3hyh_A           11 HIGNYQIVKTLGEGSFG----KVKLAYHTT-----TGQKVALKIINKKVLAKSDMQGRIEREISYLRLLR------HPHI   75 (275)
T ss_dssp             ---CCEEEEEEEC---C----CEEEEECTT-----TCCEEEEEEEECC------CHHHHHHHHHHHHHCC------CTTB
T ss_pred             EeeCeEEEEEEecCcCe----EEEEEEECC-----CCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCC------CCCC
Confidence            35899999999999999    999999998     89999999997532     2356789999999994      9999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      |++++++.     +.+.+||||| ||+ |+|.+++.+++         .++|.                    .++.|++
T Consensus        76 v~~~~~~~-----~~~~~~ivmE-y~~-g~L~~~l~~~~---------~l~e~--------------------~~~~~~~  119 (275)
T 3hyh_A           76 IKLYDVIK-----SKDEIIMVIE-YAG-NELFDYIVQRD---------KMSEQ--------------------EARRFFQ  119 (275)
T ss_dssp             CCEEEEEE-----CSSEEEEEEE-CCC-EEHHHHHHHSC---------SCCHH--------------------HHHHHHH
T ss_pred             CeEEEEEE-----ECCEEEEEEe-CCC-CCHHHHHHHcC---------CCCHH--------------------HHHHHHH
Confidence            99999999     7889999999 995 59999998765         56664                    4678999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC--------CCCCCCCcccccCCCCCCchhhHHHH
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE--------DGPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~--------~~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      ||+.||+|||++||+||||||+|||++. ++++||+|||+|+....        +++.|||||++.+...++.++||||+
T Consensus       120 qi~~al~ylH~~~IiHRDiKP~NILl~~-~~~vkl~DFGla~~~~~~~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSl  198 (275)
T 3hyh_A          120 QIISAVEYCHRHKIVHRDLKPENLLLDE-HLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSC  198 (275)
T ss_dssp             HHHHHHHHHHHTTCCCCCCCTTTEEECT-TCCEEECCSSCC---------------CTTSCHHHHSSSSCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHCCcccccCChHHeEECC-CCCEEEeecCCCeecCCCCccCCeeECcccCChhhhcCCCCCCChhhhHHH
Confidence            9999999999999999999999999998 89999999999986543        23899999977766666899999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      ||++|||++|++||.            +.+...+.+   .+....       .+.+..+|+++++||.+||++||++|||
T Consensus       199 Gvily~lltg~~PF~------------~~~~~~~~~---~i~~~~-------~~~p~~~s~~~~~li~~~L~~dP~~R~s  256 (275)
T 3hyh_A          199 GVILYVMLCRRLPFD------------DESIPVLFK---NISNGV-------YTLPKFLSPGAAGLIKRMLIVNPLNRIS  256 (275)
T ss_dssp             HHHHHHHHHSSCSSC------------CSSHHHHHH---HHHHTC-------CCCCTTSCHHHHHHHHHHSCSSGGGSCC
T ss_pred             HHHHHHHHHCCCCCC------------CCCHHHHHH---HHHcCC-------CCCCCCCCHHHHHHHHHHccCChhHCcC
Confidence            999999999999995            222222222   222221       2234568999999999999999999999


Q ss_pred             HHHHHcCCCCCC
Q 005958          391 CLDALRHPFLCG  402 (667)
Q Consensus       391 a~elL~HPwf~~  402 (667)
                      ++|+|+||||+.
T Consensus       257 ~~eil~hpw~k~  268 (275)
T 3hyh_A          257 IHEIMQDDWFKV  268 (275)
T ss_dssp             HHHHHHCHHHHT
T ss_pred             HHHHHcCccccc
Confidence            999999999974

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=9e-56  Score=474.37  Aligned_cols=248  Identities=15%  Similarity=0.220  Sum_probs=203.8

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      .+++|++++.||+|+||    +||+|+++.     +|+.||||++.+.    ...+.+.+|+++|++|+      |||||
T Consensus        22 sme~Y~~~~~lG~G~fg----~V~~a~~~~-----~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~------HpnIV   86 (350)
T 4b9d_A           22 SMEKYVRLQKIGEGSFG----KAILVKSTE-----DGRQYVIKEINISRMSSKEREESRREVAVLANMK------HPNIV   86 (350)
T ss_dssp             CCCCEEEEEEC----------CEEEEEETT-----TCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCC------CTTBC
T ss_pred             cccceEEeEEEecCCCe----EEEEEEECC-----CCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCC------CCCCC
Confidence            46899999999999999    999999998     8999999999753    23456789999999994      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      +++++++     +.+.+||||| ||+||+|.++|..++       ...++|                    ..++.|+.|
T Consensus        87 ~~~~~~~-----~~~~~yiVmE-y~~gg~L~~~i~~~~-------~~~~~e--------------------~~~~~~~~q  133 (350)
T 4b9d_A           87 QYRESFE-----ENGSLYIVMD-YCEGGDLFKRINAQK-------GVLFQE--------------------DQILDWFVQ  133 (350)
T ss_dssp             CEEEEEE-----ETTEEEEEEE-CCTTCBHHHHHHHTT-------TCCCCH--------------------HHHHHHHHH
T ss_pred             cEEEEEE-----ECCEEEEEEe-CCCCCcHHHHHHHcC-------CCCCCH--------------------HHHHHHHHH
Confidence            9999999     7789999999 999999999997643       124555                    457789999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      |+.||+|||++|||||||||+|||++. ++.+||+|||+|+.+..         +++.|||||++. +..|+.++|||||
T Consensus       134 i~~aL~ylH~~~IiHRDlKp~NILl~~-~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~l~-~~~y~~~~DiwSl  211 (350)
T 4b9d_A          134 ICLALKHVHDRKILHRDIKSQNIFLTK-DGTVQLGDFGIARVLNSTVELARACIGTPYYLSPEICE-NKPYNNKSDIWAL  211 (350)
T ss_dssp             HHHHHHHHHHTTCEETTCCGGGEEECT-TCCEEECSTTEESCCCHHHHHHHHHHSCCTTCCHHHHT-TCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHCCeeeccCCHHHEEECC-CCCEEEcccccceeecCCcccccccCCCccccCHHHHC-CCCCCcHHHHHHH
Confidence            999999999999999999999999998 89999999999986643         458999999654 5569999999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      |||+|||++|++||.            +.+...+   +..+.....+      +....+++++++||.+||++||++|||
T Consensus       212 GvilyemltG~~PF~------------~~~~~~~---~~~i~~~~~~------~~~~~~s~~~~~li~~~L~~dP~~R~s  270 (350)
T 4b9d_A          212 GCVLYELCTLKHAFE------------AGSMKNL---VLKIISGSFP------PVSLHYSYDLRSLVSQLFKRNPRDRPS  270 (350)
T ss_dssp             HHHHHHHHHSSCSCC------------CSSHHHH---HHHHHHTCCC------CCCTTSCHHHHHHHHHHTCSSGGGSCC
T ss_pred             HHHHHHHHHCCCCCC------------CcCHHHH---HHHHHcCCCC------CCCccCCHHHHHHHHHHccCChhHCcC
Confidence            999999999999995            3233222   2223332221      234568999999999999999999999


Q ss_pred             HHHHHcCCCCCC
Q 005958          391 CLDALRHPFLCG  402 (667)
Q Consensus       391 a~elL~HPwf~~  402 (667)
                      ++|+|+||||+.
T Consensus       271 ~~e~l~hp~~~~  282 (350)
T 4b9d_A          271 VNSILEKGFIAK  282 (350)
T ss_dssp             HHHHHTSHHHHT
T ss_pred             HHHHhcCHHhhc
Confidence            999999999976

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=9.4e-55  Score=476.92  Aligned_cols=247  Identities=17%  Similarity=0.244  Sum_probs=209.6

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      +.|+++++||+|+||    +||+|+++.     +|+.||||++...  ...+.+.+|+.+|+.|+      |||||++++
T Consensus       151 ~~y~~~~~iG~G~fG----~V~~a~~~~-----tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~------HpnIV~l~~  215 (423)
T 4fie_A          151 SYLDNFIKIGEGSTG----IVCIATVRS-----SGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQ------HENVVEMYN  215 (423)
T ss_dssp             GTEEEEEEEEECSSC----EEEEEEETT-----TCCEEEEEEEESTTCSSGGGHHHHHHHHHHCC------CTTBCCEEE
T ss_pred             HhcEeeeEeccCcCc----EEEEEEECC-----CCCEEEEEEEeccchhHHHHHHHHHHHHHhCC------CCCCCceEE
Confidence            569999999999999    999999998     8999999999753  23355789999999994      999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      +|.     +.+.+||||| ||+||+|.++++..          .|+|+                    .++.|++||+.|
T Consensus       216 ~~~-----~~~~~~iVmE-y~~gG~L~~~i~~~----------~l~e~--------------------~~~~~~~qil~a  259 (423)
T 4fie_A          216 SYL-----VGDELWVVME-FLEGGALTDIVTHT----------RMNEE--------------------QIAAVCLAVLQA  259 (423)
T ss_dssp             EEE-----ETTEEEEEEE-CCTTEEHHHHHHHS----------CCCHH--------------------HHHHHHHHHHHH
T ss_pred             EEE-----ECCEEEEEEe-CCCCCcHHHHHhcc----------CCCHH--------------------HHHHHHHHHHHH
Confidence            999     7789999999 99999999999763          46664                    578899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      |+|||++|||||||||+||||+. +|.+||+|||+|+.+...         ++.|||||++ ....|+.++|||||||++
T Consensus       260 L~ylH~~~IiHRDiKp~NILl~~-~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl-~~~~y~~~~DiWSlGvil  337 (423)
T 4fie_A          260 LSVLHAQGVIHRDIKSDSILLTH-DGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELI-SRLPYGPEVDIWSLGIMV  337 (423)
T ss_dssp             HHHHHHTTEECCCCSTTTEEECT-TCCEEECCCTTCEECCSSCCCBCCCEECTTTCCHHHH-TTCCBCTHHHHHHHHHHH
T ss_pred             HHHHHHCCeecccCCHHHEEEcC-CCCEEEecCccceECCCCCccccccccCcCcCCHHHH-CCCCCCcHHHHHHHHHHH
Confidence            99999999999999999999998 899999999999876433         3899999954 556799999999999999


Q ss_pred             HHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHH
Q 005958          315 AKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDA  394 (667)
Q Consensus       315 yemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~el  394 (667)
                      |||++|++||.            +.+.......+.   ....+    .+..+..+++++++||.+||+.||++|||++|+
T Consensus       338 yeml~G~~PF~------------~~~~~~~~~~i~---~~~~~----~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~el  398 (423)
T 4fie_A          338 IEMVDGEPPYF------------NEPPLKAMKMIR---DNLPP----RLKNLHKVSPSLKGFLDRLLVRDPAQRATAAEL  398 (423)
T ss_dssp             HHHHHSSCTTT------------TSCHHHHHHHHH---HSCCC----CCSCTTSSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred             HHHHHCCCCCC------------CcCHHHHHHHHH---cCCCC----CCcccccCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence            99999999995            333333333222   22111    234456789999999999999999999999999


Q ss_pred             HcCCCCCCCC
Q 005958          395 LRHPFLCGPR  404 (667)
Q Consensus       395 L~HPwf~~~~  404 (667)
                      |+||||+...
T Consensus       399 l~Hp~~~~~~  408 (423)
T 4fie_A          399 LKHPFLAKAG  408 (423)
T ss_dssp             TTCGGGGGCC
T ss_pred             hcCHHhcCCC
Confidence            9999998754

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=2.3e-55  Score=463.24  Aligned_cols=251  Identities=19%  Similarity=0.288  Sum_probs=203.5

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      ..++|++++.||+|+||    +||+|++....  .+++.||||++++..    ....+.+|+++|+++      +|||||
T Consensus        22 ~p~~Y~i~~~lG~G~fg----~Vy~a~~~~~~--~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l------~HpnIv   89 (304)
T 3ubd_A           22 DPSQFELLKVLGQGSFG----KVFLVKKISGS--DARQLYAMKVLKKATLKVRDRVRTKMERDILVEV------NHPFIV   89 (304)
T ss_dssp             CGGGEEEEEEEECGGGC----EEEEEEECSST--TTTCEEEEEEEESEEEEEEECC------CCCCCC------CCTTEE
T ss_pred             CccccEEEEEEecCCCe----EEEEEEEccCC--CCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHC------CCCCCC
Confidence            34789999999999999    99999986421  268999999997522    234578899999998      599999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      +++++++     +.+.+||||| ||+||+|.++|.+.+         .++|.                    .++.|+.|
T Consensus        90 ~l~~~~~-----~~~~~~ivmE-y~~gg~L~~~l~~~~---------~l~e~--------------------~~~~~~~q  134 (304)
T 3ubd_A           90 KLHYAFQ-----TEGKLYLILD-FLRGGDLFTRLSKEV---------MFTEE--------------------DVKFYLAE  134 (304)
T ss_dssp             CEEEEEE-----ETTEEEEEEC-CCTTCEEHHHHHHHC---------CCCHH--------------------HHHHHHHH
T ss_pred             eEEEEEE-----ECCEEEEEEE-cCCCCCHHHHHHhcC---------CCCHH--------------------HHHHHHHH
Confidence            9999999     7789999999 999999999998765         56664                    46789999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      |+.||+|||++||+||||||+|||++. ++++||+|||+|+....         +++.|||||++. ...|+.++|||||
T Consensus       135 i~~aL~ylH~~~IiHRDlKp~NILl~~-~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~~~-~~~y~~~~DiwSl  212 (304)
T 3ubd_A          135 LALALDHLHSLGIIYRDLKPENILLDE-EGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVN-RRGHTQSADWWSF  212 (304)
T ss_dssp             HHHHHHHHHHTTCCCSSCCGGGEEECT-TSCEEEESSEEEEC-----CCCCSCCCCGGGCCHHHHH-TSCCCTHHHHHHH
T ss_pred             HHHHHHHHHHCCCcCCCCCHHHeEEcC-CCCEEecccccceeccCCCccccccccCcccCCHHHhc-cCCCCCCCcccch
Confidence            999999999999999999999999998 89999999999985432         348899999654 5569999999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      ||++|||++|++||.            +.+..++...   +....       ...+..+|+++++||.+||++||++|||
T Consensus       213 GvilyemltG~~PF~------------~~~~~~~~~~---i~~~~-------~~~p~~~s~~~~~li~~~L~~dP~~R~t  270 (304)
T 3ubd_A          213 GVLMFEMLTGTLPFQ------------GKDRKETMTM---ILKAK-------LGMPQFLSPEAQSLLRMLFKRNPANRLG  270 (304)
T ss_dssp             HHHHHHHHHSSCSSC------------CSSHHHHHHH---HHHCC-------CCCCTTSCHHHHHHHHHHTCSSGGGSTT
T ss_pred             HHHHHHHHhCCCCCC------------CcCHHHHHHH---HHcCC-------CCCCCcCCHHHHHHHHHHcccCHHHCCC
Confidence            999999999999995            3333333222   22221       2234568999999999999999999998


Q ss_pred             -----HHHHHcCCCCCCCCC
Q 005958          391 -----CLDALRHPFLCGPRW  405 (667)
Q Consensus       391 -----a~elL~HPwf~~~~~  405 (667)
                           ++|+++||||++++|
T Consensus       271 a~~~~~~eil~Hp~f~~idw  290 (304)
T 3ubd_A          271 AGPDGVEEIKRHSFFSTIDW  290 (304)
T ss_dssp             CSTTTHHHHHTSGGGTTCCH
T ss_pred             CCcCCHHHHHcCccccCCCH
Confidence                 479999999999886

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=5.7e-54  Score=450.06  Aligned_cols=250  Identities=20%  Similarity=0.261  Sum_probs=202.5

Q ss_pred             CCe-EEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           86 GDF-KILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        86 ~~y-~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ++| ++.++||+|+||    +||+|+++.     +++.||+|++....    ..+.+.+|+++|++|+      |||||+
T Consensus        25 gr~~~~~~~iG~G~fg----~Vy~a~~~~-----~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~------HpnIV~   89 (290)
T 3fpq_A           25 GRFLKFDIEIGRGSFK----TVYKGLDTE-----TTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQ------HPNIVR   89 (290)
T ss_dssp             SSEEEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCC------CTTBCC
T ss_pred             CceEEeeeEEecCcCc----EEEEEEECC-----CCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCC------CCCCCc
Confidence            345 788899999999    999999998     89999999997532    3356789999999994      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      ++++|.+.. ...+.+||||| ||++|+|.+++.+.+         .+++                    ..++.|+.||
T Consensus        90 ~~~~~~~~~-~~~~~~~lvmE-y~~gg~L~~~l~~~~---------~l~~--------------------~~~~~~~~qi  138 (290)
T 3fpq_A           90 FYDSWESTV-KGKKCIVLVTE-LMTSGTLKTYLKRFK---------VMKI--------------------KVLRSWCRQI  138 (290)
T ss_dssp             EEEEEEEEE-TTEEEEEEEEE-CCCSCBHHHHHHHHS---------SCCH--------------------HHHHHHHHHH
T ss_pred             EEEEEeecc-CCCcEEEEEEe-CCCCCCHHHHHHhcC---------CCCH--------------------HHHHHHHHHH
Confidence            999997431 13567999999 999999999998764         5565                    4567899999


Q ss_pred             HHHHHHHHHCC--CcccCCCCCcEEEcCCCCeEEEeeecccccccC-------CCCCCCCcccccCCCCCCchhhHHHHH
Q 005958          241 LIGVNYLHSHG--LAHTELRLENVHISPVDRHIKVGILGNAADFYE-------DGPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       241 l~aL~yLHs~g--IvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-------~~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      +.||+|||++|  ||||||||+|||++..++.+||+|||+|+....       +++.|||||++.  ..|+.++||||||
T Consensus       139 ~~aL~ylH~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~~~~~~~~GTp~YmAPE~~~--~~y~~~~DiwSlG  216 (290)
T 3fpq_A          139 LKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYE--EKYDESVDVYAFG  216 (290)
T ss_dssp             HHHHHHHHTSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGG--TCCCTHHHHHHHH
T ss_pred             HHHHHHHHHCCCCEEecccChhheeEECCCCCEEEEeCcCCEeCCCCccCCcccCccccCHHHcC--CCCCcHHHHHHHH
Confidence            99999999999  999999999999985478999999999975443       348999999653  3599999999999


Q ss_pred             HHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH
Q 005958          312 FMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC  391 (667)
Q Consensus       312 viLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa  391 (667)
                      |++|||++|++||.+..           +...+..   .+.....     ........++++++||.+||+.||++|||+
T Consensus       217 vilyelltg~~Pf~~~~-----------~~~~~~~---~i~~~~~-----~~~~~~~~~~~~~~li~~~L~~dP~~R~s~  277 (290)
T 3fpq_A          217 MCMLEMATSEYPYSECQ-----------NAAQIYR---RVTSGVK-----PASFDKVAIPEVKEIIEGCIRQNKDERYSI  277 (290)
T ss_dssp             HHHHHHHHSSCTTTTCS-----------SHHHHHH---HHTTTCC-----CGGGGGCCCHHHHHHHHHHSCSSGGGSCCH
T ss_pred             HHHHHHHHCCCCCCCCC-----------cHHHHHH---HHHcCCC-----CCCCCccCCHHHHHHHHHHccCChhHCcCH
Confidence            99999999999995321           1122222   1221111     122345678899999999999999999999


Q ss_pred             HHHHcCCCCCC
Q 005958          392 LDALRHPFLCG  402 (667)
Q Consensus       392 ~elL~HPwf~~  402 (667)
                      +|+|+||||++
T Consensus       278 ~e~l~Hp~~~~  288 (290)
T 3fpq_A          278 KDLLNHAFFQE  288 (290)
T ss_dssp             HHHHTSGGGC-
T ss_pred             HHHhcCccccC
Confidence            99999999986

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=3.6e-54  Score=465.52  Aligned_cols=270  Identities=19%  Similarity=0.208  Sum_probs=213.1

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYV  165 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~  165 (667)
                      ++|++.++||+|+||    +||+|+++..  ..+++.||||++.......++.+|+++|+.+.     +|||||+++++|
T Consensus        21 ~~Y~i~~~lG~G~fg----~Vy~a~~~~~--~~~~~~vAiK~i~~~~~~~~~~~E~~~l~~~~-----~h~nIv~l~~~~   89 (361)
T 4f9c_A           21 NVFKIEDKIGEGTFS----SVYLATAQLQ--VGPEEKIALKHLIPTSHPIRIAAELQCLTVAG-----GQDNVMGVKYCF   89 (361)
T ss_dssp             GTCEEEEEEEECSSE----EEEEEEEEBT--TSCEEEEEEEEECTTSCHHHHHHHHHHHHHTC-----SBTTBCCCSEEE
T ss_pred             CcEEEEEEEecccCc----EEEEEEEccc--CCCCCEEEEEEEccccCHHHHHHHHHHHHHhc-----CCCCCceEEEEE
Confidence            679999999999999    9999998631  12678999999987766677899999999996     699999999999


Q ss_pred             EecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHH
Q 005958          166 SSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVN  245 (667)
Q Consensus       166 ~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~  245 (667)
                      .     +.+++||||| ||++|+|.++++            .++|                    ..++.|++||+.||+
T Consensus        90 ~-----~~~~~~lvmE-~~~g~~L~~~~~------------~l~~--------------------~~~~~~~~qll~al~  131 (361)
T 4f9c_A           90 R-----KNDHVVIAMP-YLEHESFLDILN------------SLSF--------------------QEVREYMLNLFKALK  131 (361)
T ss_dssp             E-----ETTEEEEEEE-CCCCCCHHHHHT------------TCCH--------------------HHHHHHHHHHHHHHH
T ss_pred             E-----ECCEEEEEEe-CCCcccHHHHHc------------CCCH--------------------HHHHHHHHHHHHHHH
Confidence            9     7789999999 999999999985            3555                    457889999999999


Q ss_pred             HHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-------------------------------------CCCC
Q 005958          246 YLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-------------------------------------DGPN  288 (667)
Q Consensus       246 yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-------------------------------------~~~~  288 (667)
                      |||++||+||||||+|||++.+.+.+||+|||+|+....                                     +++.
T Consensus       132 ylH~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~  211 (361)
T 4f9c_A          132 RIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPG  211 (361)
T ss_dssp             HHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECTTCSCGGGGGC--------------------------CCCCGG
T ss_pred             HHHHCCeEeCcCCHHHeEEeCCCCeEEECcCCCCcccCCccccccccccccccccccccccccccccccccccccccCcc
Confidence            999999999999999999998458999999999975432                                     4578


Q ss_pred             CCCcccccCCCCCCchhhHHHHHHHHHHHHhCCCCCh----hhhhhhhhhhccCCChh--------------------HH
Q 005958          289 NSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDP----LIFTKFKSFLTKGIDPS--------------------CL  344 (667)
Q Consensus       289 Y~APE~l~~~~~ys~ksDIWSLGviLyemltG~~PF~----~~~~~~~~~~~~g~~~~--------------------~l  344 (667)
                      |+|||++.+...|+.++||||+|||+|||++|++||.    +..++..++...|.+..                    ..
T Consensus       212 Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~~~~~~~~l~~I~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~  291 (361)
T 4f9c_A          212 FRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKASDDLTALAQIMTIRGSRETIQAAKTFGKSILCSKEVPAQDL  291 (361)
T ss_dssp             GCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTEEEEESSCCCCCCH
T ss_pred             ccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCCCCCCHHHHHHHHHHhcCCccchhhhhhccccccccccCcchhh
Confidence            9999988787789999999999999999999999984    23444555444443221                    11


Q ss_pred             HHHHHHHhccC---C------CCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          345 REFLLQVLNRN---S------SSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       345 ~~~~~~~~~~~---~------~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      ...........   +      .........+..++++++|||.+||++||++||||+|+|+||||+++.
T Consensus       292 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~is~~a~DLl~~lL~~dP~~R~ta~eaL~Hp~f~~i~  360 (361)
T 4f9c_A          292 RKLCERLRGMDSSTPKLTSDIQGHATNLEGWNEVPDEAYDLLDKLLDLNPASRITAEEALLHPFFKDMS  360 (361)
T ss_dssp             HHHHHHHC----------------------CTTCCHHHHHHHHHHTCSCTTTSCCHHHHHTSGGGTTC-
T ss_pred             hHHHHhhccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhcCcccCCCC
Confidence            11111110000   0      001112234567899999999999999999999999999999999864

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.6e-53  Score=465.84  Aligned_cols=273  Identities=20%  Similarity=0.317  Sum_probs=217.7

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ++|++++.||+|+||    +||+|+++.     +|+.||||+++..    ...+.+.+|+++|+.|+      |||||++
T Consensus        54 ~~Y~~~~~lG~G~fG----~V~~a~~~~-----t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~------HpnIv~l  118 (398)
T 4b99_A           54 DEYEIIETIGNGAYG----VVSSARRRL-----TGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFK------HDNIIAI  118 (398)
T ss_dssp             SSEEEEEEEEECSSC----EEEEEEETT-----TCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCC------CTTBCCE
T ss_pred             CCeEEEEEEecccCe----EEEEEEECC-----CCCEEEEEEECccccchHHHHHHHHHHHHHHhcC------CCCcceE
Confidence            579999999999999    999999998     8999999999753    23356789999999995      9999999


Q ss_pred             EEEEEecc-cCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          162 HGYVSSHT-TSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       162 ~~~~~~~~-~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      ++++.... ..+.+.+||||| ||+| +|.++|.+.+         .|+|                    ..++.|++||
T Consensus       119 ~~~~~~~~~~~~~~~~~ivmE-~~~g-~L~~~i~~~~---------~l~~--------------------~~~~~~~~qi  167 (398)
T 4b99_A          119 KDILRPTVPYGEFKSVYVVLD-LMES-DLHQIIHSSQ---------PLTL--------------------EHVRYFLYQL  167 (398)
T ss_dssp             EEECCCSSCTTTCCCEEEEEE-CCSE-EHHHHHTSSS---------CCCH--------------------HHHHHHHHHH
T ss_pred             eeeeecccccccCCEEEEEEe-CCCC-CHHHHHHhcC---------CCCH--------------------HHHHHHHHHH
Confidence            99987432 234578999999 9975 9999998754         5665                    4578899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-------------CCCCCCCcccccCCCCCCchhhH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-------------DGPNNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-------------~~~~Y~APE~l~~~~~ys~ksDI  307 (667)
                      +.||+|||++|||||||||+|||++. ++.+||+|||+|+.+..             +++.|||||++.+...|+.++||
T Consensus       168 l~al~ylH~~~iiHRDlKP~NIl~~~-~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~Di  246 (398)
T 4b99_A          168 LRGLKYMHSAQVIHRDLKPSNLLVNE-NCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDL  246 (398)
T ss_dssp             HHHHHHHHHTTCBCCCCCGGGEEECT-TCCEEECCCTTCBCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHH
T ss_pred             HHHHHHHHHCcCcCCCcCccccccCC-CCCEEEeecceeeecccCccccccccccceeChHhcCHHHhcCCCCCCChhhe
Confidence            99999999999999999999999998 89999999999986532             34889999988888889999999


Q ss_pred             HHHHHHHHHHHhCCCCChh---hhhhhhhhhccCCChhHHHHH-----HHHHhccCCCCCCCCc-ccccCCCHHHHHHHH
Q 005958          308 RCVGFMMAKMVLRELMDPL---IFTKFKSFLTKGIDPSCLREF-----LLQVLNRNSSSGNTGF-QILDRNWGAGWNLLS  378 (667)
Q Consensus       308 WSLGviLyemltG~~PF~~---~~~~~~~~~~~g~~~~~l~~~-----~~~~~~~~~~~~~~~~-~~~~~~s~e~~dLI~  378 (667)
                      ||+|||+|||++|++||++   .+++..++...|.++......     ........+......+ ...+.++++++|||.
T Consensus       247 WSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~  326 (398)
T 4b99_A          247 WSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLG  326 (398)
T ss_dssp             HHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCGGGTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHH
T ss_pred             ehhHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHH
Confidence            9999999999999999973   344455555555554322111     1111111111111111 234678999999999


Q ss_pred             HhhhcCcCCCCCHHHHHcCCCCCCCCC
Q 005958          379 LLLATKPSKRISCLDALRHPFLCGPRW  405 (667)
Q Consensus       379 ~~L~~DP~kRpSa~elL~HPwf~~~~~  405 (667)
                      +||++||++||||+|+|+||||++...
T Consensus       327 ~mL~~dP~~R~ta~e~L~Hp~f~~~~~  353 (398)
T 4b99_A          327 RMLRFEPSARISAAAALRHPFLAKYHD  353 (398)
T ss_dssp             HHSCSSTTTSCCHHHHTTSGGGTTTCC
T ss_pred             HHCcCChhHCcCHHHHhcCHhhCcCCC
Confidence            999999999999999999999998653

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=1.9e-53  Score=454.17  Aligned_cols=248  Identities=17%  Similarity=0.137  Sum_probs=205.6

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ...+.|++.++||+|+||    +||+|+++.     +|+.||||+++....   ..+|+.+|+.|      +|||||+++
T Consensus        55 ~~~~~~~~~~~lG~G~fG----~Vy~a~~~~-----~g~~vAiK~i~~~~~---~~~E~~il~~l------~HpnIV~l~  116 (336)
T 4g3f_A           55 EEVHWMTHQPRVGRGSFG----EVHRMKDKQ-----TGFQCAVKKVRLEVF---RVEELVACAGL------SSPRIVPLY  116 (336)
T ss_dssp             BTTTEEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEETTTC---CTHHHHTTTTC------CCTTBCCEE
T ss_pred             cchhheEeCcEeccCCCe----EEEEEEECC-----CCCEEEEEEECHHHh---HHHHHHHHHhC------CCCCCCcEE
Confidence            346789999999999999    999999998     899999999976432   25799999999      499999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     +.+.+||||| ||+||+|.++|++.+         .|+|.                    .++.|+.||+.
T Consensus       117 ~~~~-----~~~~~~ivmE-y~~gg~L~~~l~~~~---------~l~e~--------------------~~~~~~~qi~~  161 (336)
T 4g3f_A          117 GAVR-----EGPWVNIFME-LLEGGSLGQLIKQMG---------CLPED--------------------RALYYLGQALE  161 (336)
T ss_dssp             EEEE-----ETTEEEEEEC-CCTTCBHHHHHHHHS---------SCCHH--------------------HHHHHHHHHHH
T ss_pred             EEEE-----ECCEEEEEEe-ccCCCcHHHHHHHcC---------CCCHH--------------------HHHHHHHHHHH
Confidence            9999     7789999999 999999999998765         56664                    46789999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCC-eEEEeeecccccccC--------------CCCCCCCcccccCCCCCCchhhH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDR-HIKVGILGNAADFYE--------------DGPNNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~-~vKL~DFGlA~~~~~--------------~~~~Y~APE~l~~~~~ys~ksDI  307 (667)
                      ||+|||++|||||||||+|||++. ++ ++||+|||+|+.+..              +++.|||||++. +..|+.++||
T Consensus       162 aL~ylH~~~IiHRDlKp~NILl~~-~g~~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~-~~~y~~~~Di  239 (336)
T 4g3f_A          162 GLEYLHTRRILHGDVKADNVLLSS-DGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVM-GKPCDAKVDI  239 (336)
T ss_dssp             HHHHHHTTTEECSCCCGGGEEECT-TSCCEEECCCTTCEEC------------CCCCCCGGGCCHHHHT-TCCCCTHHHH
T ss_pred             HHHHHHHCCceecccCHHHEEEeC-CCCEEEEeeCCCCeEccCCCcccceecCCccccCccccCHHHHC-CCCCCcHHHH
Confidence            999999999999999999999998 55 799999999986532              457899999655 4569999999


Q ss_pred             HHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          308 RCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       308 WSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      |||||++|||++|++||.+..            ...+..   .+.....+    ....++.+++++++||.+||++||++
T Consensus       240 wSlGvilyemltG~~Pf~~~~------------~~~~~~---~i~~~~~~----~~~~~~~~s~~~~~li~~~L~~dP~~  300 (336)
T 4g3f_A          240 WSSCCMMLHMLNGCHPWTQYF------------RGPLCL---KIASEPPP----IREIPPSCAPLTAQAIQEGLRKEPVH  300 (336)
T ss_dssp             HHHHHHHHHHHHSSCSSTTTC------------CSCCHH---HHHHSCCG----GGGSCTTSCHHHHHHHHHHTCSSGGG
T ss_pred             HHHHHHHHHHHHCcCCCCCCC------------HHHHHH---HHHcCCCC----chhcCccCCHHHHHHHHHHccCCHhH
Confidence            999999999999999996321            111111   11111111    12345678999999999999999999


Q ss_pred             CCCHHHH-------------HcCCCCCCCC
Q 005958          388 RISCLDA-------------LRHPFLCGPR  404 (667)
Q Consensus       388 RpSa~el-------------L~HPwf~~~~  404 (667)
                      |||+.|+             |+|||+.+..
T Consensus       301 R~sa~el~~~l~~~l~~~~~l~hPw~~~~~  330 (336)
T 4g3f_A          301 RASAMELRRKVGKALQEVGGLKSPWKGEYK  330 (336)
T ss_dssp             SCCHHHHHHHHHHHHHHTTSSCSCSSSSCC
T ss_pred             CcCHHHHHHHHHHHHhhhhhccCCCcCCCC
Confidence            9999997             5799998865

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=4.3e-53  Score=445.74  Aligned_cols=256  Identities=18%  Similarity=0.261  Sum_probs=195.1

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      +++|++++.||+|+||    +||+|+++.     +++.||||+++..   ...+.+.+|+++|++|+      |||||++
T Consensus         4 l~dy~~~~~lG~G~fg----~V~~a~~~~-----~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~------HpnIV~~   68 (299)
T 4g31_A            4 LTDFEPIQCLGRGGFG----VVFEAKNKV-----DDCNYAIKRIRLPNRELAREKVMREVKALAKLE------HPGIVRY   68 (299)
T ss_dssp             HHHEEEEEEEEECC------EEEEEEETT-----TCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCC------CTTBCCE
T ss_pred             chhCEEeeEEecCCCe----EEEEEEECC-----CCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCC------CCCCCeE
Confidence            3579999999999999    999999998     8999999999752   23356789999999994      9999999


Q ss_pred             EEEEEeccc-------CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          162 HGYVSSHTT-------SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       162 ~~~~~~~~~-------~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      +++|.....       ....++||||| ||++|+|.+++..+..         +++.                 +...++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~l~ivmE-~~~gg~L~~~l~~~~~---------~~~~-----------------~~~~~~  121 (299)
T 4g31_A           69 FNAWLEKNTTEKLQPSSPKVYLYIQMQ-LCRKENLKDWMNGRCT---------IEER-----------------ERSVCL  121 (299)
T ss_dssp             EEEEEEEC----------CEEEEEEEE-CCCSCCHHHHHHTCCS---------GGGS-----------------CHHHHH
T ss_pred             EEEEEecCccccccccCCCcEEEEEEe-cCCCCcHHHHHHhcCC---------CChh-----------------HHHHHH
Confidence            999974421       12346899999 9999999999987652         2221                 124578


Q ss_pred             HHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------------------CCCCCCCcc
Q 005958          235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------------------DGPNNSSPD  293 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------------------~~~~Y~APE  293 (667)
                      .|+.||+.||+|||++||+||||||+|||++. ++.+||+|||+|+.+..                     +++.|||||
T Consensus       122 ~i~~qi~~al~ylH~~~IiHRDlKp~NILl~~-~~~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE  200 (299)
T 4g31_A          122 HIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTM-DDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPE  200 (299)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCCCGGGEEECT-TCCEEECCCCCC--------------------------CCCTTSCHH
T ss_pred             HHHHHHHHHHHHHHHCcCccccCcHHHeEECC-CCcEEEccCccceecCCCccccccccccccccccCCcccCccccCHH
Confidence            89999999999999999999999999999998 89999999999986543                     458899999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHH
Q 005958          294 SNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAG  373 (667)
Q Consensus       294 ~l~~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~  373 (667)
                      ++. +..|+.++|||||||++|||++   ||....+.              ...+........      .+.+...++++
T Consensus       201 ~~~-~~~y~~~~DiwSlGvilyell~---Pf~~~~~~--------------~~~~~~~~~~~~------p~~~~~~~~~~  256 (299)
T 4g31_A          201 QIH-GNSYSHKVDIFSLGLILFELLY---PFSTQMER--------------VRTLTDVRNLKF------PPLFTQKYPCE  256 (299)
T ss_dssp             HHT-TCCCCTHHHHHHHHHHHHHHHS---CCSSHHHH--------------HHHHHHHHTTCC------CHHHHHHCHHH
T ss_pred             HHc-CCCCCCHHHHHHHHHHHHHHcc---CCCCccHH--------------HHHHHHHhcCCC------CCCCcccCHHH
Confidence            654 5679999999999999999996   66422111              111111111111      11223456788


Q ss_pred             HHHHHHhhhcCcCCCCCHHHHHcCCCCCCCCCCC
Q 005958          374 WNLLSLLLATKPSKRISCLDALRHPFLCGPRWRV  407 (667)
Q Consensus       374 ~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~~~~  407 (667)
                      ++||.+||+.||++|||+.|+|+||||++.+|+.
T Consensus       257 ~~li~~~L~~dP~~Rps~~eil~h~~~~~~~~p~  290 (299)
T 4g31_A          257 YVMVQDMLSPSPMERPEAINIIENAVFEDLDFPG  290 (299)
T ss_dssp             HHHHHHHTCSSGGGSCCHHHHHTSGGGCCC----
T ss_pred             HHHHHHHcCCChhHCcCHHHHhcCHhhCCCCCCC
Confidence            9999999999999999999999999999988644

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=3.9e-52  Score=476.47  Aligned_cols=258  Identities=16%  Similarity=0.181  Sum_probs=214.3

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCC
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      .+.+++|++++.||+|+||    +||+|+++.     +|+.||||++.+..     ......+|..++..++   .++||
T Consensus       185 ~~slddf~i~k~LG~G~fG----~V~la~~~~-----tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~---~~~HP  252 (689)
T 3v5w_A          185 HLTMNDFSVHRIIGRGGFG----EVYGCRKAD-----TGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVS---TGDCP  252 (689)
T ss_dssp             CCCGGGEEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHS---SSCCT
T ss_pred             CCchHHeEEEEEEecccCe----EEEEEEECC-----CCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHh---hCCCC
Confidence            4678999999999999999    999999998     89999999997632     2233456655555543   23699


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      |||+++++|+     +.+.+||||| ||+||+|.++|.+.+         .|+|.                    .++.|
T Consensus       253 ~IV~l~~~f~-----~~~~lylVmE-y~~GGdL~~~l~~~~---------~l~E~--------------------~a~~y  297 (689)
T 3v5w_A          253 FIVCMSYAFH-----TPDKLSFILD-LMNGGDLHYHLSQHG---------VFSEA--------------------DMRFY  297 (689)
T ss_dssp             TBCCEEEEEE-----CSSEEEEEEC-CCCSCBHHHHHHHHC---------CCCHH--------------------HHHHH
T ss_pred             CEeEEEEEEE-----ECCEEEEEEe-cCCCCcHHHHHHhcC---------CCCHH--------------------HHHHH
Confidence            9999999999     8899999999 999999999998865         67764                    46889


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-------CCCCCCcccccCCCCCCchhhHHH
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-------GPNNSSPDSNMDRRQMMIAFDMRC  309 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-------~~~Y~APE~l~~~~~ys~ksDIWS  309 (667)
                      +.||+.||+|||++|||||||||+||||+. +|++||+|||+|+.+...       ++.|||||++..+..|+.++||||
T Consensus       298 ~~qIl~aL~yLH~~gIiHRDLKPeNILld~-~G~vKL~DFGlA~~~~~~~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWS  376 (689)
T 3v5w_A          298 AAEIILGLEHMHNRFVVYRDLKPANILLDE-HGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFS  376 (689)
T ss_dssp             HHHHHHHHHHHHTTTEECCCCSGGGEEECT-TSCEEECCCTTCEECSSCCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHH
T ss_pred             HHHHHHHHHHHHHCCccccCCchHHeEEeC-CCCEEecccceeeecCCCCCCCccCCcCccCHHHHhCCCCCCcHHHHHH
Confidence            999999999999999999999999999998 999999999999876543       388999997766678999999999


Q ss_pred             HHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          310 VGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       310 LGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      |||++|||++|++||.+..            .....+....+....       ...+..+|+++++||.+||+.||++|+
T Consensus       377 LGvilYEmLtG~~PF~~~~------------~~~~~~i~~~i~~~~-------~~~p~~~S~~a~dLI~~lL~~dP~~Rl  437 (689)
T 3v5w_A          377 LGCMLFKLLRGHSPFRQHK------------TKDKHEIDRMTLTMA-------VELPDSFSPELRSLLEGLLQRDVNRRL  437 (689)
T ss_dssp             HHHHHHHHHHSSCTTCGGG------------CCCHHHHHHHHHHCC-------CCCCTTSCHHHHHHHHHHTCSCGGGCT
T ss_pred             HHHHHHHHHhCCCCCCCCC------------hHHHHHHHHhhcCCC-------CCCCccCCHHHHHHHHHHccCCHhHCC
Confidence            9999999999999996321            111122233333322       234467899999999999999999999


Q ss_pred             C-----HHHHHcCCCCCCCCCC
Q 005958          390 S-----CLDALRHPFLCGPRWR  406 (667)
Q Consensus       390 S-----a~elL~HPwf~~~~~~  406 (667)
                      +     ++|+++||||++++|.
T Consensus       438 ~~~~~ga~ei~~HpfF~~idW~  459 (689)
T 3v5w_A          438 GCLGRGAQEVKESPFFRSLDWQ  459 (689)
T ss_dssp             TCSSSTHHHHTTSGGGTTCCHH
T ss_pred             CCCCCCHHHHhcCccccCCCHH
Confidence            8     7999999999999884

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=4e-50  Score=458.70  Aligned_cols=256  Identities=16%  Similarity=0.201  Sum_probs=213.3

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      +++|++++.||+|+||    +||+|+++.     +|+.||||++...  ...+.+.+|+++|+.|+      |||||+++
T Consensus       156 l~~Y~i~~~lG~G~fg----~V~~~~~~~-----tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~------hpnIv~l~  220 (573)
T 3uto_A          156 LDHYDIHEELGTGAFG----VVHRVTERA-----TGNNFAAKFVMTPHESDKETVRKEIQTMSVLR------HPTLVNLH  220 (573)
T ss_dssp             GGTEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEECCSHHHHHHHHHHHHHHHHTC------CTTBCCEE
T ss_pred             ccccEEEEEEeeccCe----EEEEEEECC-----CCCEEEEEEEeccchhhHHHHHHHHHHHHhCC------CCCCCeEE
Confidence            5799999999999999    999999998     8999999999753  33456789999999994      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      ++|.     +.+.+||||| ||+||+|.++|....        ..|+|                    ..++.|++||+.
T Consensus       221 ~~~~-----~~~~~~iv~E-~~~gg~L~~~i~~~~--------~~l~e--------------------~~~~~~~~qi~~  266 (573)
T 3uto_A          221 DAFE-----DDNEMVMIYE-FMSGGELFEKVADEH--------NKMSE--------------------DEAVEYMRQVCK  266 (573)
T ss_dssp             EEEE-----CSSEEEEEEE-CCCCCBHHHHHTCTT--------SCEEH--------------------HHHHHHHHHHHH
T ss_pred             EEEE-----ECCEEEEEEe-ecCCCcHHHHHHHhC--------CCCCH--------------------HHHHHHHHHHHH
Confidence            9999     8899999999 999999999996532        24555                    457889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCC-CCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPV-DRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~-~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      ||+|||++||+||||||+|||++.+ .+.+||+|||+|+.+...        .+.|||||++. +..|+.++|||||||+
T Consensus       267 al~ylH~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~~~~~~~GT~~y~APEv~~-~~~y~~~~DiWSlGvi  345 (573)
T 3uto_A          267 GLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAE-GKPVGYYTDMWSVGVL  345 (573)
T ss_dssp             HHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTSEEEEECSSGGGCCHHHHT-TCCBCHHHHHHHHHHH
T ss_pred             HHHHHHHCCeeeccCChhhccccCCCCCCEEEeeccceeEccCCCceeeeEECccccCHHHhC-CCCCCcHHHHHHHHHH
Confidence            9999999999999999999999862 489999999999877543        37899999654 4569999999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      +|||++|++||.            |........   .+......   .....+..+|+++++||.+||++||++|||++|
T Consensus       346 lyeml~G~~Pf~------------~~~~~~~~~---~i~~~~~~---~~~~~~~~~s~~~~dli~~~L~~dp~~R~t~~e  407 (573)
T 3uto_A          346 SYILLSGLSPFG------------GENDDETLR---NVKSCDWN---MDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQ  407 (573)
T ss_dssp             HHHHHHSCCSSC------------CSSHHHHHH---HHHTTCCC---CCSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHH
T ss_pred             HHHHHHCCCCCC------------CcCHHHHHH---HHHhCCCC---CCcccccCCCHHHHHHHHHHccCChhHCcCHHH
Confidence            999999999995            333322222   22222111   112345678999999999999999999999999


Q ss_pred             HHcCCCCCCCCCCCC
Q 005958          394 ALRHPFLCGPRWRVD  408 (667)
Q Consensus       394 lL~HPwf~~~~~~~~  408 (667)
                      +|+||||+...|+..
T Consensus       408 ~l~Hpw~~~~~~~~~  422 (573)
T 3uto_A          408 ALEHPWLTPGNAPGR  422 (573)
T ss_dssp             HHHSTTTSCCCCTTT
T ss_pred             HhcCcCcCCCCCCCc
Confidence            999999998876543

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=1.9e-50  Score=425.49  Aligned_cols=263  Identities=17%  Similarity=0.187  Sum_probs=202.7

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      .+..++|.+.++||+|+||    +||+|++.......++..||||+++..  ...+++.+|+++|++|+      |||||
T Consensus         9 ~I~r~~~~l~~~lG~G~fG----~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~------HpnIV   78 (299)
T 4asz_A            9 HIKRHNIVLKRELGEGAFG----KVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQ------HEHIV   78 (299)
T ss_dssp             BCCGGGEEEEEEEEC--CC----CEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCC------CTTBC
T ss_pred             ccCHHHeEEeeEEeeCCCc----EEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCC------CCCCc
Confidence            4566889999999999999    999999875433446899999999753  33466899999999995      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++.     +.+.+||||| ||++|||.++|..++......                ....+...+++..+..|+.|
T Consensus        79 ~l~g~~~-----~~~~~~lV~E-y~~~G~L~~~l~~~~~~~~~~----------------~~~~~~~~l~~~~~~~i~~q  136 (299)
T 4asz_A           79 KFYGVCV-----EGDPLIMVFE-YMKHGDLNKFLRAHGPDAVLM----------------AEGNPPTELTQSQMLHIAQQ  136 (299)
T ss_dssp             CEEEEEC-----SSSSEEEEEE-CCTTCBHHHHHHHTSHHHHHC--------------------CCCCCCHHHHHHHHHH
T ss_pred             cEEEEEe-----eCCEEEEEEE-cCCCCcHHHHHHhcCcccccc----------------cccCCCCCCCHHHHHHHHHH
Confidence            9999998     7788999999 999999999998754110000                00112223445678889999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhhHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      |+.||+|||+++||||||||+|||++. ++.+||+|||+|+.....           .+.|||||++. ...|+.++|||
T Consensus       137 ia~gl~yLH~~~iiHRDlKp~NILl~~-~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~-~~~~~~k~DVw  214 (299)
T 4asz_A          137 IAAGMVYLASQHFVHRDLATRNCLVGE-NLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIM-YRKFTTESDVW  214 (299)
T ss_dssp             HHHHHHHHHHTTCCCSCCSGGGEEECG-GGCEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHH-HCCCCHHHHHH
T ss_pred             HHHHHHHHHhCCcccCccCHhhEEECC-CCcEEECCcccceecCCCCceeecCceecChhhcCHHHHc-CCCCCchhhHH
Confidence            999999999999999999999999998 899999999999754332           26799999655 45699999999


Q ss_pred             HHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          309 CVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       309 SLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      ||||++|||+| |++||.+            ....++...+.   ...      ..+.+..+++++.+||.+||+.||++
T Consensus       215 S~Gvvl~Ellt~G~~Pf~~------------~~~~~~~~~i~---~~~------~~~~p~~~~~~~~~li~~cl~~dP~~  273 (299)
T 4asz_A          215 SLGVVLWEIFTYGKQPWYQ------------LSNNEVIECIT---QGR------VLQRPRTCPQEVYELMLGCWQREPHM  273 (299)
T ss_dssp             HHHHHHHHHHTTTCCTTTT------------SCHHHHHHHHH---HTC------CCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             HHHHHHHHHHcCCCCCCCC------------CCHHHHHHHHH---cCC------CCCCCccchHHHHHHHHHHcCCChhH
Confidence            99999999998 8999953            23333333322   211      12234568899999999999999999


Q ss_pred             CCCHHHHHcCCCCC
Q 005958          388 RISCLDALRHPFLC  401 (667)
Q Consensus       388 RpSa~elL~HPwf~  401 (667)
                      |||++|++  +|++
T Consensus       274 RPs~~~i~--~~L~  285 (299)
T 4asz_A          274 RKNIKGIH--TLLQ  285 (299)
T ss_dssp             SCCHHHHH--HHHH
T ss_pred             CcCHHHHH--HHHH
Confidence            99999984  4543

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=1.3e-49  Score=424.55  Aligned_cols=263  Identities=16%  Similarity=0.156  Sum_probs=200.2

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      .+..++|.+.++||+|+||    +||+|+++......+++.||||+++..  ...+.+.+|+++|++|+      |||||
T Consensus        37 ~i~~~d~~l~~~LG~G~fG----~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~------HpnIV  106 (329)
T 4aoj_A           37 HIKRRDIVLKWELGEGAFG----KVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQ------HQHIV  106 (329)
T ss_dssp             BCCGGGEEEEEEEEECSSE----EEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCC------CTTBC
T ss_pred             ccCHHHeEEEEEEccCCCc----EEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCC------CCCCC
Confidence            4556789999999999999    999999875333347899999999753  33466899999999995      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++.     +.+.+||||| ||++|+|.++|+.+........   ..           ......++++..+..|+.|
T Consensus       107 ~l~g~~~-----~~~~~~lV~E-y~~~G~L~~~l~~~~~~~~~~~---~~-----------~~~~~~~l~~~~~~~i~~q  166 (329)
T 4aoj_A          107 RFFGVCT-----EGRPLLMVFE-YMRHGDLNRFLRSHGPDAKLLA---GG-----------EDVAPGPLGLGQLLAVASQ  166 (329)
T ss_dssp             CEEEEEC-----SSSSEEEEEE-CCTTCBHHHHHHTSSCC-------------------------CCSCCHHHHHHHHHH
T ss_pred             cEEEEEE-----ECCEEEEEEE-cCCCCcHHHHHHhcCccccccc---cc-----------ccccCCCCCHHHHHHHHHH
Confidence            9999998     7788999999 9999999999987642111000   00           0011224556778899999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhhHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      |+.||+|||+++||||||||+|||++. ++.+||+|||+|+.....           .+.|||||++. ...|+.++|||
T Consensus       167 ia~gl~yLH~~~iiHRDLKp~NILl~~-~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~-~~~~~~~sDvw  244 (329)
T 4aoj_A          167 VAAGMVYLAGLHFVHRDLATRNCLVGQ-GLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESIL-YRKFTTESDVW  244 (329)
T ss_dssp             HHHHHHHHHHTTCCCSCCCGGGEEEET-TTEEEECCCC----------------CCCCGGGCCHHHHT-TCCCCHHHHHH
T ss_pred             HHHHHHHHhcCCeecccccHhhEEECC-CCcEEEcccccceeccCCCcceecCcccccccccChhhhc-CCCCCcccccc
Confidence            999999999999999999999999998 899999999999865322           25799999554 55699999999


Q ss_pred             HHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          309 CVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       309 SLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      ||||++|||+| |++||.+            ....++...+..   ..      ..+.+..+++++.+||.+||+.||++
T Consensus       245 S~Gvvl~Ellt~G~~Pf~~------------~~~~~~~~~i~~---g~------~~~~p~~~~~~~~~li~~cl~~dP~~  303 (329)
T 4aoj_A          245 SFGVVLWEIFTYGKQPWYQ------------LSNTEAIDCITQ---GR------ELERPRACPPEVYAIMRGCWQREPQQ  303 (329)
T ss_dssp             HHHHHHHHHHTTSCCTTCS------------SCHHHHHHHHHH---TC------CCCCCTTCCHHHHHHHHHHCCSSTTT
T ss_pred             chHHHHHHHHcCCCCCCCC------------CCHHHHHHHHHc---CC------CCCCcccccHHHHHHHHHHcCcChhH
Confidence            99999999998 8999852            223333332222   11      12344578899999999999999999


Q ss_pred             CCCHHHHHcC
Q 005958          388 RISCLDALRH  397 (667)
Q Consensus       388 RpSa~elL~H  397 (667)
                      |||++|++++
T Consensus       304 RPs~~ei~~~  313 (329)
T 4aoj_A          304 RHSIKDVHAR  313 (329)
T ss_dssp             SCCHHHHHHH
T ss_pred             CcCHHHHHHH
Confidence            9999999864

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-49  Score=419.17  Aligned_cols=247  Identities=15%  Similarity=0.171  Sum_probs=195.2

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcc----hhhHHHHHHHHHHHHHHhhccCCC
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS----VQAQRRGRRAIEVLKKLVRRRLMY  154 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~----~~~~~~~~rEi~iL~~L~~~~~~~  154 (667)
                      ..+++..++|++.++||+|+||    +||+|++.        ..||||+++.    ....+.+.+|+++|++++      
T Consensus        29 ~~Wei~~~~l~l~~~iG~G~fG----~Vy~~~~~--------~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~------   90 (307)
T 3omv_A           29 YYWEIEASEVMLSTRIGSGSFG----TVYKGKWH--------GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTR------   90 (307)
T ss_dssp             CCCBCCTTSCCEEEECCCCSSS----EEEEEESS--------SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCC------
T ss_pred             cCcEEcHHHeEEeeEEeeCCCc----EEEEEEEC--------CcEEEEEEEecCCCHHHHHHHHHHHHHHHhCC------
Confidence            3466778999999999999999    99999754        3499999874    223456789999999995      


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      |||||++++++.      .+.+||||| ||++|+|.++|...+        ..+++                    ..+.
T Consensus        91 HpNIV~l~g~~~------~~~~~iVmE-y~~gGsL~~~l~~~~--------~~l~~--------------------~~~~  135 (307)
T 3omv_A           91 HVNILLFMGYMT------KDNLAIVTQ-WCEGSSLYKHLHVQE--------TKFQM--------------------FQLI  135 (307)
T ss_dssp             CTTBCCEEEEEC------SSSCEEEEE-CCSSCBHHHHHHTSC--------CCCCH--------------------HHHH
T ss_pred             CCCEeeEEEEEE------CCeEEEEEE-cCCCCCHHHHHhhcC--------CCCCH--------------------HHHH
Confidence            999999999875      346899999 999999999997643        14554                    4567


Q ss_pred             HHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-----------CCCCCCCcccccC--CCCC
Q 005958          235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-----------DGPNNSSPDSNMD--RRQM  301 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-----------~~~~Y~APE~l~~--~~~y  301 (667)
                      .|+.||+.||+|||++|||||||||+|||++. ++.+||+|||+|+....           +++.|||||++.+  ...|
T Consensus       136 ~i~~qia~gL~yLH~~~IiHRDlKp~NILl~~-~~~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y  214 (307)
T 3omv_A          136 DIARQTAQGMDYLHAKNIIHRDMKSNNIFLHE-GLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPF  214 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCBCSCCCSSSEEEET-TEEEEECCCSSCBC------------CCCCTTSCCHHHHHCCSSCCC
T ss_pred             HHHHHHHHHHHHHHHCCccCCccCHHHEEECC-CCcEEEeeccCceecccCCcceeecccccCCCccCHHHhhccCCCCC
Confidence            89999999999999999999999999999998 89999999999975432           3488999997754  3469


Q ss_pred             CchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhh
Q 005958          302 MIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLL  381 (667)
Q Consensus       302 s~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L  381 (667)
                      +.++|||||||++|||++|++||.+..           +...+...+......  +   ........+++++.+||.+||
T Consensus       215 ~~ksDVwS~Gvvl~Elltg~~Pf~~~~-----------~~~~~~~~~~~~~~~--p---~~~~~~~~~~~~l~~li~~cl  278 (307)
T 3omv_A          215 SFQSDVYSYGIVLYELMTGELPYSHIN-----------NRDQIIFMVGRGYAS--P---DLSKLYKNCPKAMKRLVADCV  278 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCTTTTCC-----------CHHHHHHHHHTTCCC--C---CSTTSCTTSCHHHHHHHHHHT
T ss_pred             CcHHHhHhHHHHHHHHHHCCCCCCCCC-----------hHHHHHHHHhcCCCC--C---CcccccccchHHHHHHHHHHc
Confidence            999999999999999999999996321           112222222111111  0   011234578899999999999


Q ss_pred             hcCcCCCCCHHHHH
Q 005958          382 ATKPSKRISCLDAL  395 (667)
Q Consensus       382 ~~DP~kRpSa~elL  395 (667)
                      +.||++|||+.|++
T Consensus       279 ~~dP~~RPs~~ei~  292 (307)
T 3omv_A          279 KKVKEERPLFPQIL  292 (307)
T ss_dssp             CSSSTTSCCHHHHH
T ss_pred             CCCHhHCcCHHHHH
Confidence            99999999999764

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=2e-49  Score=419.36  Aligned_cols=265  Identities=16%  Similarity=0.176  Sum_probs=203.8

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      .++..+++++.++||+|+||    +||+|+.....+..+++.||||+++..   ...+.+.+|+.+|++|+      |||
T Consensus        21 ~ei~~~~~~~~~~lG~G~fG----~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~------HpN   90 (308)
T 4gt4_A           21 KEISLSAVRFMEELGEDRFG----KVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQ------HPN   90 (308)
T ss_dssp             CBCCGGGEEEEEEEEECSSC----EEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCC------CTT
T ss_pred             ccCCHHHCeEeeEeccCCCc----EEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCC------CCC
Confidence            45667889999999999999    999999754333346889999999753   23467899999999995      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      ||++++++.     +.+.++|||| ||++|||.++|..+........   ..          ........+++..+..|+
T Consensus        91 IV~l~g~~~-----~~~~~~lV~E-y~~~G~L~~~L~~~~~~~~~~~---~~----------~~~~~~~~l~~~~~~~i~  151 (308)
T 4gt4_A           91 VVCLLGVVT-----KDQPLSMIFS-YCSHGDLHEFLVMRSPHSDVGS---TD----------DDRTVKSALEPPDFVHLV  151 (308)
T ss_dssp             BCCEEEEEC-----SSSSCEEEEE-CCSSCBHHHHHHTTCSSCCCC------------------CCEECCCCHHHHHHHH
T ss_pred             CCCcceEEE-----ECCEEEEEEE-cCCCCcHHHHHHhhCccccccc---cc----------cccccccCCCHHHHHHHH
Confidence            999999998     7788999999 9999999999986542111000   00          000111234556788899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhh
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksD  306 (667)
                      .||+.||+|||+++||||||||+|||++. ++.+||+|||+|+.....           .+.|||||++. ...|+.++|
T Consensus       152 ~qia~gl~yLH~~~iiHRDLK~~NILl~~-~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~-~~~~s~ksD  229 (308)
T 4gt4_A          152 AQIAAGMEYLSSHHVVHKDLATRNVLVYD-KLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIM-YGKFSIDSD  229 (308)
T ss_dssp             HHHHHHHHHHHHTTCCCSCCSGGGEEECG-GGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHH-HCCCCHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCCccccceEECC-CCCEEECCcccceeccCCCceeEecccccCCcccCHHHHh-CCCCCccch
Confidence            99999999999999999999999999998 899999999999865322           25799999655 456999999


Q ss_pred             HHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCc
Q 005958          307 MRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       307 IWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      ||||||++|||+| |.+||.            +....++...+.   ...      ..+.++.+++++.+||.+||+.||
T Consensus       230 VwSfGvvl~El~t~g~~Pf~------------~~~~~~~~~~i~---~~~------~~~~p~~~~~~~~~li~~C~~~dP  288 (308)
T 4gt4_A          230 IWSYGVVLWEVFSYGLQPYC------------GYSNQDVVEMIR---NRQ------VLPCPDDCPAWVYALMIECWNEFP  288 (308)
T ss_dssp             HHHHHHHHHHHHTTTCCTTT------------TCCHHHHHHHHH---TTC------CCCCCTTCCHHHHHHHHHHTCSSG
T ss_pred             hhhHHHHHHHHHhCCCCCCC------------CCCHHHHHHHHH---cCC------CCCCcccchHHHHHHHHHHcCCCh
Confidence            9999999999998 899985            333333333332   111      123456788999999999999999


Q ss_pred             CCCCCHHHHHcC
Q 005958          386 SKRISCLDALRH  397 (667)
Q Consensus       386 ~kRpSa~elL~H  397 (667)
                      ++|||+.|++++
T Consensus       289 ~~RPs~~ei~~~  300 (308)
T 4gt4_A          289 SRRPRFKDIHSR  300 (308)
T ss_dssp             GGSCCHHHHHHH
T ss_pred             hHCcCHHHHHHH
Confidence            999999999875

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=5e-49  Score=423.68  Aligned_cols=269  Identities=16%  Similarity=0.127  Sum_probs=208.5

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      .+++..++|++++.||+|+||    +||+|++.......+++.||||++...   ...+.+.+|+++|+++.     +||
T Consensus        58 ~wEi~~~~~~l~~~LG~G~fG----~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~-----hhp  128 (353)
T 4ase_A           58 KWEFPRDRLKLGKPLGRGAFG----QVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIG-----HHL  128 (353)
T ss_dssp             HHBCCGGGEEEEEEEEECSSE----EEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHC-----CCT
T ss_pred             ccEecHHHeEEeeEEecCCCe----EEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcC-----CCC
Confidence            345667899999999999999    999999987555556789999999763   23456789999999997     469


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      |||++++++..    .++.+||||| ||++|+|.++|+.......-   .....+          ......+++..+..|
T Consensus       129 nIV~l~g~~~~----~~~~~~iV~E-y~~~G~L~~~L~~~~~~~~~---~~~~~~----------~~~~~~l~~~~~~~~  190 (353)
T 4ase_A          129 NVVNLLGACTK----PGGPLMVIVE-FCKFGNLSTYLRSKRNEFVP---YKVAPE----------DLYKDFLTLEHLICY  190 (353)
T ss_dssp             TBCCEEEEECC----TTSCCEEEEE-CCTTEEHHHHHHHTGGGBCC---C-----------------CTTCBCHHHHHHH
T ss_pred             cEEEEEEEEEe----cCCEEEEEEE-cCCCCCHHHHHHhccccccc---ccccch----------hhccccCCHHHHHHH
Confidence            99999999861    3567999999 99999999999875311000   000000          011123455778899


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-----------CCCCCcccccCCCCCCchh
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-----------PNNSSPDSNMDRRQMMIAF  305 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-----------~~Y~APE~l~~~~~ys~ks  305 (667)
                      +.||+.||+|||+++||||||||+|||++. ++.+||+|||+|+......           +.|||||++. ...|+.++
T Consensus       191 ~~qia~gl~yLH~~~iiHRDLK~~NILl~~-~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~-~~~y~~ks  268 (353)
T 4ase_A          191 SFQVAKGMEFLASRKCIHRDLAARNILLSE-KNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIF-DRVYTIQS  268 (353)
T ss_dssp             HHHHHHHHHHHHHTTCCCSCCSGGGEEECG-GGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHH-HCCCCHHH
T ss_pred             HHHHHHHHHhHhhCCeecCccCccceeeCC-CCCEEECcchhhhhcccCCCceeeccccccccccCHHHHh-cCCCCCcc
Confidence            999999999999999999999999999998 8999999999998664332           5699999665 45699999


Q ss_pred             hHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          306 DMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       306 DIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      |||||||++|||+| |++||++..           ....+...+....         ..+.++.+++++++||.+||+.|
T Consensus       269 DVwS~Gv~l~El~t~G~~Pf~~~~-----------~~~~~~~~i~~g~---------~~~~p~~~~~~~~~li~~c~~~d  328 (353)
T 4ase_A          269 DVWSFGVLLWEIFSLGASPYPGVK-----------IDEEFCRRLKEGT---------RMRAPDYTTPEMYQTMLDCWHGE  328 (353)
T ss_dssp             HHHHHHHHHHHHTTTSCCSSTTCC-----------CSHHHHHHHHHTC---------CCCCCTTCCHHHHHHHHHHTCSS
T ss_pred             cEeehHHHHHHHHhCCCCCCCCCC-----------HHHHHHHHHHcCC---------CCCCCccCCHHHHHHHHHHcCcC
Confidence            99999999999998 899996321           1222223322211         12334568899999999999999


Q ss_pred             cCCCCCHHHHHcC
Q 005958          385 PSKRISCLDALRH  397 (667)
Q Consensus       385 P~kRpSa~elL~H  397 (667)
                      |++|||+.|+++|
T Consensus       329 P~~RPt~~eil~~  341 (353)
T 4ase_A          329 PSQRPTFSELVEH  341 (353)
T ss_dssp             GGGSCCHHHHHHH
T ss_pred             hhHCcCHHHHHHH
Confidence            9999999999987

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=1.5e-46  Score=400.46  Aligned_cols=250  Identities=19%  Similarity=0.271  Sum_probs=210.8

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      ...+++|++.+.||+|+||    .||+|++..     +++.||||++....    ..+.+.+|+++|+.++      |||
T Consensus        11 ~~~~~~y~~~~~lG~G~~g----~V~~a~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~------hpn   75 (328)
T 3fe3_A           11 QPHIGNYRLLKTIGKGNFA----KVKLARHIL-----TGREVAIKIIDKTQLNPTSLQKLFREVRIMKILN------HPN   75 (328)
T ss_dssp             CCEETTEEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCC------CTT
T ss_pred             CCccCCEEEEEEEeeCCCE----EEEEEEECC-----CCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCC------CCC
Confidence            3457899999999999999    999999987     89999999997532    3345689999999994      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     ..+.+|+||| |+++|+|.+++...+         .+++                    ..++.++
T Consensus        76 Iv~l~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~l~~--------------------~~~~~~~  120 (328)
T 3fe3_A           76 IVKLFEVIE-----TEKTLYLIME-YASGGEVFDYLVAHG---------RMKE--------------------KEARSKF  120 (328)
T ss_dssp             BCCEEEEEE-----CSSEEEEEEC-CCTTCBHHHHHHHHC---------CCCH--------------------HHHHHHH
T ss_pred             EeeEEEEEE-----ECCEEEEEEE-CCCCCcHHHHHHHcC---------CCCH--------------------HHHHHHH
Confidence            999999998     7889999999 999999999998764         4555                    4567899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHH
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRC  309 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWS  309 (667)
                      .||+.||+|||++||+||||||+|||++. ++.+||+|||+|......        .+.|+|||++.+...++.++||||
T Consensus       121 ~qi~~al~~lH~~~ivHrDlkp~NIll~~-~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Diws  199 (328)
T 3fe3_A          121 RQIVSAVQYCHQKRIVHRDLKAENLLLDA-DMNIKIADFGFSNEFTVGGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWS  199 (328)
T ss_dssp             HHHHHHHHHHHHTTCCCSCCCGGGEEECT-TSCEEECSTTCCGGGSSSCGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHH
T ss_pred             HHHHHHHHHHHHCCEeccCCCHHHEEEcC-CCCEEEeeccCceecCCCCccccccCCcceeCcccccCCCcCCchhhhhh
Confidence            99999999999999999999999999998 899999999999765433        367999997777665678999999


Q ss_pred             HHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          310 VGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       310 LGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      |||++|+|++|++||.            +.....+.+.+   ....       ...+...++++.+||.+||+.||++||
T Consensus       200 lG~il~ell~g~~pf~------------~~~~~~~~~~i---~~~~-------~~~p~~~s~~~~~li~~~L~~dP~~R~  257 (328)
T 3fe3_A          200 LGVILYTLVSGSLPFD------------GQNLKELRERV---LRGK-------YRIPFYMSTDCENLLKRFLVLNPIKRG  257 (328)
T ss_dssp             HHHHHHHHHHSSCSSC------------CSSHHHHHHHH---HHCC-------CCCCTTSCHHHHHHHHHHCCSSTTTSC
T ss_pred             hHHHHHHHHhCCCCCC------------CCCHHHHHHHH---HhCC-------CCCCCCCCHHHHHHHHHHCCCChhHCc
Confidence            9999999999999995            33333333332   2221       123345789999999999999999999


Q ss_pred             CHHHHHcCCCCCCCC
Q 005958          390 SCLDALRHPFLCGPR  404 (667)
Q Consensus       390 Sa~elL~HPwf~~~~  404 (667)
                      |++|+|+||||+...
T Consensus       258 t~~eil~h~~~~~~~  272 (328)
T 3fe3_A          258 TLEQIMKDRWINAGH  272 (328)
T ss_dssp             CHHHHTTCTTTTTTC
T ss_pred             CHHHHhcCHhhcCCC
Confidence            999999999998754

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=6.7e-47  Score=420.00  Aligned_cols=277  Identities=23%  Similarity=0.258  Sum_probs=210.3

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      .++|++++.||+|+||    +||+|+++.     +++.||||++...    ...+.+.+|+.+|++++      ||||++
T Consensus        52 ~~~y~~~~~lG~G~~g----~V~~~~~~~-----~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~------h~niv~  116 (458)
T 3rp9_A           52 PDRYEIRHLIGTGSYG----HVCEAYDKL-----EKRVVAIKKILRVFEDLIDCKRILREIAILNRLN------HDHVVK  116 (458)
T ss_dssp             CTTEEECCC-----------CEEEEEECC-------CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCC------CTTBCC
T ss_pred             CCCeEEeeEeeecCCe----EEEEEEECC-----CCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCC------CCCCCc
Confidence            3789999999999999    999999998     8999999999652    23456789999999994      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++..........+|+||| |+++ +|.+++....         .+++                    ..++.|++||
T Consensus       117 l~~~~~~~~~~~~~~~~lv~e-~~~~-~L~~~~~~~~---------~l~~--------------------~~~~~~~~qi  165 (458)
T 3rp9_A          117 VLDIVIPKDVEKFDELYVVLE-IADS-DFKKLFRTPV---------YLTE--------------------LHIKTLLYNL  165 (458)
T ss_dssp             EEEECCCSCTTTCCCEEEEEC-CCSE-EHHHHHHSSC---------CCCH--------------------HHHHHHHHHH
T ss_pred             eEEEEecCCcccCceEEEEEe-cccc-chhhhcccCC---------CCCH--------------------HHHHHHHHHH
Confidence            999996443335578999999 9876 9999998654         4555                    4578899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------------------------------
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------------------------------  285 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------------------------------  285 (667)
                      +.||+|||++||+||||||+|||++. ++.+||+|||+|+.....                                   
T Consensus       166 ~~aL~~LH~~~iiHrDlKp~NILl~~-~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (458)
T 3rp9_A          166 LVGVKYVHSAGILHRDLKPANCLVNQ-DCSVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHV  244 (458)
T ss_dssp             HHHHHHHHHTTCBCCCCCGGGEEECT-TCCEEECCCTTCBCTTSCTTCCCCCC---------------------------
T ss_pred             HHHHHHHHhCCcCCCCCChhhEEECC-CCCEeecccccchhccCccccccccccCccccccccccccccccccccccCCc
Confidence            99999999999999999999999998 899999999999865421                                   


Q ss_pred             -CCCCCCcccccCCCCCCchhhHHHHHHHHHHHHh-----------CCCCChhh-----------------------hhh
Q 005958          286 -GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVL-----------RELMDPLI-----------------------FTK  330 (667)
Q Consensus       286 -~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemlt-----------G~~PF~~~-----------------------~~~  330 (667)
                       .+.|+|||++.....|+.++||||||||+|||++           |+++|++.                       +++
T Consensus       245 gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg~~~~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~~~~~l  324 (458)
T 3rp9_A          245 VTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMIKENVAYHADRGPLFPGSSCFPLSPDQKAGNDFKFHTRGNRDQL  324 (458)
T ss_dssp             CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTTSTTTCSSGGGCCCSCC--------------------CHHHHHHH
T ss_pred             ccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHhccccccccccccccCCCCccccccccccccccccccccCCHHHH
Confidence             3669999987777789999999999999999999           77888642                       334


Q ss_pred             hhhhhccCCChhHHHHHH-----HHHhccCCCC-CCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          331 FKSFLTKGIDPSCLREFL-----LQVLNRNSSS-GNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       331 ~~~~~~~g~~~~~l~~~~-----~~~~~~~~~~-~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      ..++...|.++......+     .......+.. ........+..++++++||.+||++||++|||++|+|+||||++..
T Consensus       325 ~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~t~~e~L~Hp~f~~~~  404 (458)
T 3rp9_A          325 NVIFNILGTPSEEDIEALEKEDAKRYIRIFPKREGTDLAERFPASSADAIHLLKRMLVFNPNKRITINECLAHPFFKEVR  404 (458)
T ss_dssp             HHHHHHHCCCCHHHHHTSSCHHHHHHHTTSCCCCCCCGGGGSTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC
T ss_pred             HHHHHHcCCCCHHHHhhcCCHHHHHHHHhcCCCCCCCHHHHCCCCCHHHHHHHHHHhccCccccCCHHHHhcCHhhhhcC
Confidence            444455555554322211     1111111111 1122234567799999999999999999999999999999999988


Q ss_pred             CCCC
Q 005958          405 WRVD  408 (667)
Q Consensus       405 ~~~~  408 (667)
                      |...
T Consensus       405 ~~~~  408 (458)
T 3rp9_A          405 IAEV  408 (458)
T ss_dssp             CGGG
T ss_pred             CCcc
Confidence            6443

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=5.1e-47  Score=408.28  Aligned_cols=253  Identities=19%  Similarity=0.256  Sum_probs=209.4

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCC
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      ..+.+++|++++.||+|+||    +||+|+++.     +++.||||++++..     ..+...+|+.+++.+.     +|
T Consensus        18 ~~~~~~~y~~~~~lG~G~fg----~V~~~~~~~-----~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~-----~h   83 (353)
T 3txo_A           18 NRLGIDNFEFIRVLGKGSFG----KVMLARVKE-----TGDLYAVKVLKKDVILQDDDVECTMTEKRILSLAR-----NH   83 (353)
T ss_dssp             -----CCEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTT-----TC
T ss_pred             CCCchhheEEEEEEeeCCCE----EEEEEEEcC-----CCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhcc-----CC
Confidence            45678999999999999999    999999998     89999999998632     2345688999999986     69


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      |||+++++++.     +.+.+|+||| |+++|+|.+++.+.+         .+++                    ..++.
T Consensus        84 p~Iv~l~~~~~-----~~~~~~lv~E-~~~gg~L~~~l~~~~---------~~~~--------------------~~~~~  128 (353)
T 3txo_A           84 PFLTQLFCCFQ-----TPDRLFFVME-FVNGGDLMFHIQKSR---------RFDE--------------------ARARF  128 (353)
T ss_dssp             TTBCCEEEEEE-----CSSEEEEEEE-CCCSCBHHHHHHHHS---------SCCH--------------------HHHHH
T ss_pred             CceeeEEEEEE-----eCCEEEEEEe-CCCCCcHHHHHHHcC---------CCCH--------------------HHHHH
Confidence            99999999999     7889999999 999999999998754         5665                    45678


Q ss_pred             HHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhh
Q 005958          236 LMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       236 i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksD  306 (667)
                      |+.||+.||+|||++||+||||||+|||++. ++++||+|||+|+....         +.+.|+|||++. ...|+.++|
T Consensus       129 ~~~qi~~aL~~LH~~givHrDlkp~NILl~~-~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~D  206 (353)
T 3txo_A          129 YAAEIISALMFLHDKGIIYRDLKLDNVLLDH-EGHCKLADFGMCKEGICNGVTTATFCGTPDYIAPEILQ-EMLYGPAVD  206 (353)
T ss_dssp             HHHHHHHHHHHHHHTTCBCCCCCGGGEEECT-TSCEEECCCTTCBCSCC---------CCGGGCCHHHHH-HHHCTTHHH
T ss_pred             HHHHHHHHHHHHHHCCCcccCCCHHHEEECC-CCCEEEccccceeecccCCccccccCCCcCeEChhhcC-CCCcCCccC
Confidence            9999999999999999999999999999998 89999999999985332         237899999654 456899999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          307 MRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       307 IWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      ||||||++|||++|++||.            +.....+...   +....       ......+++++++||.+||+.||+
T Consensus       207 iwslG~il~ell~G~~Pf~------------~~~~~~~~~~---i~~~~-------~~~p~~~~~~~~~li~~lL~~dP~  264 (353)
T 3txo_A          207 WWAMGVLLYEMLCGHAPFE------------AENEDDLFEA---ILNDE-------VVYPTWLHEDATGILKSFMTKNPT  264 (353)
T ss_dssp             HHHHHHHHHHHHHSSCSSC------------CSSHHHHHHH---HHHCC-------CCCCTTSCHHHHHHHHHHTCSSGG
T ss_pred             CCcchHHHHHHHhCCCCCC------------CCCHHHHHHH---HHcCC-------CCCCCCCCHHHHHHHHHHhhhCHH
Confidence            9999999999999999995            2233322222   22221       223345789999999999999999


Q ss_pred             CCCCH------HHHHcCCCCCCCCCC
Q 005958          387 KRISC------LDALRHPFLCGPRWR  406 (667)
Q Consensus       387 kRpSa------~elL~HPwf~~~~~~  406 (667)
                      +||++      +|+++||||++++|.
T Consensus       265 ~R~~~~~~~~~~~il~hp~f~~~~w~  290 (353)
T 3txo_A          265 MRLGSLTQGGEHAILRHPFFKEIDWA  290 (353)
T ss_dssp             GSTTSGGGTCTHHHHTSGGGTTCCHH
T ss_pred             HccCCcccCCHHHHhhCCcccCCCHH
Confidence            99999      899999999998863

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=4.6e-46  Score=398.35  Aligned_cols=250  Identities=21%  Similarity=0.280  Sum_probs=209.7

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      +.+++|++++.||+|+||    .||+|+++.     +++.||||++++..     ......+|+.+|+.+      .|||
T Consensus         2 ~~~~~y~~~~~lG~G~fg----~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l------~hp~   66 (337)
T 1o6l_A            2 VTMNDFDYLKLLGKGTFG----KVILVREKA-----TGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNT------RHPF   66 (337)
T ss_dssp             CCGGGEEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSC------CCTT
T ss_pred             CChHHeEEEEEEecCCCe----EEEEEEECC-----CCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhC------CCCc
Confidence            457899999999999999    999999997     89999999997632     234568899999988      4999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     ..+.+|+||| |+++|+|.+++.+.+         .+++                    ..++.++
T Consensus        67 iv~l~~~~~-----~~~~~~lv~E-~~~gg~L~~~l~~~~---------~~~~--------------------~~~~~~~  111 (337)
T 1o6l_A           67 LTALKYAFQ-----THDRLCFVME-YANGGELFFHLSRER---------VFTE--------------------ERARFYG  111 (337)
T ss_dssp             BCCEEEEEE-----CSSEEEEEEE-CCTTCBHHHHHHHHS---------CCCH--------------------HHHHHHH
T ss_pred             CcceEEEEE-----eCCEEEEEEe-CCCCCcHHHHHHhcC---------CCCH--------------------HHHHHHH
Confidence            999999999     7889999999 999999999998754         4565                    4567899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHH
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      .||+.||+|||++||+||||||+|||++. ++++||+|||+|+.....         .+.|+|||++ ....|+.++|||
T Consensus       112 ~qi~~aL~~LH~~~ivHrDlkp~NIll~~-~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~Diw  189 (337)
T 1o6l_A          112 AEIVSALEYLHSRDVVYRDIKLENLMLDK-DGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVL-EDNDYGRAVDWW  189 (337)
T ss_dssp             HHHHHHHHHHHHTTCBCCCCCGGGEEECT-TSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGG-SSSCBCTTHHHH
T ss_pred             HHHHHHHHHHHHCCeecCcCCHHHEEECC-CCCEEEeeccchhhcccCCCcccccccChhhCChhhh-cCCCCCchhhcc
Confidence            99999999999999999999999999998 899999999999864321         3679999955 455689999999


Q ss_pred             HHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCC
Q 005958          309 CVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  388 (667)
Q Consensus       309 SLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kR  388 (667)
                      ||||++|||++|++||.            +.+...+.+.   +....       ...+..+++++++||.+||+.||++|
T Consensus       190 slG~il~ell~g~~Pf~------------~~~~~~~~~~---i~~~~-------~~~p~~~s~~~~~li~~lL~~dP~~R  247 (337)
T 1o6l_A          190 GLGVVMYEMMCGRLPFY------------NQDHERLFEL---ILMEE-------IRFPRTLSPEAKSLLAGLLKKDPKQR  247 (337)
T ss_dssp             HHHHHHHHHHHSSCSSC------------CSSHHHHHHH---HHHCC-------CCCCTTSCHHHHHHHHHHTCSSTTTS
T ss_pred             cchhHHHHHhcCCCCCC------------CCCHHHHHHH---HHcCC-------CCCCCCCCHHHHHHHHHHhhcCHHHh
Confidence            99999999999999984            2223222222   22221       22335678999999999999999999


Q ss_pred             C-----CHHHHHcCCCCCCCCCC
Q 005958          389 I-----SCLDALRHPFLCGPRWR  406 (667)
Q Consensus       389 p-----Sa~elL~HPwf~~~~~~  406 (667)
                      |     +++|+++||||.+.+|.
T Consensus       248 ~g~~~~~~~ei~~h~~f~~~~~~  270 (337)
T 1o6l_A          248 LGGGPSDAKEVMEHRFFLSINWQ  270 (337)
T ss_dssp             TTCSTTTHHHHHTSGGGTTCCHH
T ss_pred             cCCCCCCHHHHHcCCCcCCCCHH
Confidence            9     99999999999998863

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=1.1e-45  Score=389.67  Aligned_cols=272  Identities=24%  Similarity=0.311  Sum_probs=208.1

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      +-..++|++++.||+|+||    +||+|++.      +++.||+|++....    ....+.+|++++++++      |||
T Consensus        17 q~l~~~y~~~~~lG~G~~g----~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~------hp~   80 (311)
T 3niz_A           17 QGLMEKYQKLEKVGEGTYG----VVYKAKDS------QGRIVALKRIRLDAEDEGIPSTAIREISLLKELH------HPN   80 (311)
T ss_dssp             ECSSCEEEEEEEEEECSSC----EEEEEEET------TSCEEEEEEEC------CHHHHHHHHHHHHHHCC------CTT
T ss_pred             cchHhhhHhhhhccCCCCe----EEEEEEEC------CCCEEEEEEEecccccchhhHHHHHHHHHHHHcC------CCC
Confidence            3456899999999999999    99999986      58999999997532    2345789999999994      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     +.+.+++||| |+++ +|.+++....        ..+++                    ..++.++
T Consensus        81 iv~~~~~~~-----~~~~~~lv~e-~~~~-~l~~~~~~~~--------~~~~~--------------------~~~~~~~  125 (311)
T 3niz_A           81 IVSLIDVIH-----SERCLTLVFE-FMEK-DLKKVLDENK--------TGLQD--------------------SQIKIYL  125 (311)
T ss_dssp             BCCEEEEEC-----CSSCEEEEEE-CCSE-EHHHHHHTCT--------TCCCH--------------------HHHHHHH
T ss_pred             EeeeeeEEc-----cCCEEEEEEc-CCCC-CHHHHHHhcc--------CCCCH--------------------HHHHHHH
Confidence            999999998     7789999999 9997 9999987643        13554                    4578899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHH
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      .||+.||.|||++||+||||||+|||++. ++.+||+|||+|......         .+.|+|||++.+...|+.++|||
T Consensus       126 ~qi~~~l~~LH~~~ivH~Dikp~NIl~~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Diw  204 (311)
T 3niz_A          126 YQLLRGVAHCHQHRILHRDLKPQNLLINS-DGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIW  204 (311)
T ss_dssp             HHHHHHHHHHHHTTEECCCCCGGGEEECT-TCCEEECCCTTCEETTSCCC---CCCCCCTTCCHHHHTTCCSCCTHHHHH
T ss_pred             HHHHHHHHHHHHCCcccCCCchHhEEECC-CCCEEEccCcCceecCCCcccccCCcccCCcCCHHHhcCCCCCCchHHhH
Confidence            99999999999999999999999999998 899999999999865422         36799999877777899999999


Q ss_pred             HHHHHHHHHHhCCCCChhhh---hhhhhhhccCCChhH-HHHHH--HHHhccCCC--CCCCCcccccCCCHHHHHHHHHh
Q 005958          309 CVGFMMAKMVLRELMDPLIF---TKFKSFLTKGIDPSC-LREFL--LQVLNRNSS--SGNTGFQILDRNWGAGWNLLSLL  380 (667)
Q Consensus       309 SLGviLyemltG~~PF~~~~---~~~~~~~~~g~~~~~-l~~~~--~~~~~~~~~--~~~~~~~~~~~~s~e~~dLI~~~  380 (667)
                      ||||++|+|++|++||+...   ....++...+.+... +....  .........  .........+.+++++++||.+|
T Consensus       205 slG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  284 (311)
T 3niz_A          205 SIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNM  284 (311)
T ss_dssp             HHHHHHHHHHHSSCSCCCSSTTTHHHHHHHHHCCCCTTTSGGGTTSHHHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHCCCChHHhhhhhccchhhhcccccccCCcHHHhCcccCHHHHHHHHHH
Confidence            99999999999999996321   111111111211100 00000  000000000  00011123456789999999999


Q ss_pred             hhcCcCCCCCHHHHHcCCCCCCCCC
Q 005958          381 LATKPSKRISCLDALRHPFLCGPRW  405 (667)
Q Consensus       381 L~~DP~kRpSa~elL~HPwf~~~~~  405 (667)
                      |++||++|||++|+|+||||++.++
T Consensus       285 L~~dP~~Rpt~~ell~hp~f~~~~~  309 (311)
T 3niz_A          285 LCFDPNKRISARDAMNHPYFKDLDP  309 (311)
T ss_dssp             SCSCTTTSCCHHHHHTSGGGTTSCT
T ss_pred             cCCChhHCCCHHHHhcCcccccCCc
Confidence            9999999999999999999999764

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=5.4e-47  Score=399.89  Aligned_cols=262  Identities=13%  Similarity=0.105  Sum_probs=186.1

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHH-HHHHHHHHHHHhhccCCCCCcceEEEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRR-GRRAIEVLKKLVRRRLMYHSYSMQVHGY  164 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~-~~rEi~iL~~L~~~~~~~HpnIv~l~~~  164 (667)
                      .+|.+.++||+|+||    +||+|++.       |+.||||+++....... ..+|+..+.++      +|||||+++++
T Consensus         3 r~i~L~~~iG~G~fG----~Vy~~~~~-------g~~VAvK~l~~~~~~~~~~e~Ei~~~~~l------~HpNIv~l~g~   65 (303)
T 3hmm_A            3 RTIVLQESIGKGRFG----EVWRGKWR-------GEEVAVKIFSSREERSWFREAEIYQTVML------RHENILGFIAA   65 (303)
T ss_dssp             GGEEEEEEEEECSSS----EEEEEEET-------TEEEEEEEECGGGHHHHHHHHHHHTSTTC------CCTTBCCEEEE
T ss_pred             cEEEEEEEEeeCCCe----EEEEEEEC-------CEEEEEEEECccchhhHHHHHHHHHHhcC------CCCCCCcEEEE
Confidence            468999999999999    99999864       68999999976543322 23455555566      59999999999


Q ss_pred             EEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHH
Q 005958          165 VSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGV  244 (667)
Q Consensus       165 ~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL  244 (667)
                      +..+. .....+||||| ||++|+|.++++..          .+++                    ..+..++.|++.||
T Consensus        66 ~~~~~-~~~~~~~lV~E-y~~~gsL~~~l~~~----------~l~~--------------------~~~~~i~~~ia~gl  113 (303)
T 3hmm_A           66 DNKDN-GTWTQLWLVSD-YHEHGSLFDYLNRY----------TVTV--------------------EGMIKLALSTASGL  113 (303)
T ss_dssp             EEEEC-SSSEEEEEEEE-CCTTCBHHHHHHHC----------CBCH--------------------HHHHHHHHHHHHHH
T ss_pred             EEecC-CCceEEEEEec-CCCCCcHHHHHHhC----------CCCH--------------------HHHHHHHHHHHHHH
Confidence            97431 02236899999 99999999999864          3444                    44677999999999


Q ss_pred             HHHHHC--------CCcccCCCCCcEEEcCCCCeEEEeeecccccccC-------------CCCCCCCcccccCCC----
Q 005958          245 NYLHSH--------GLAHTELRLENVHISPVDRHIKVGILGNAADFYE-------------DGPNNSSPDSNMDRR----  299 (667)
Q Consensus       245 ~yLHs~--------gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-------------~~~~Y~APE~l~~~~----  299 (667)
                      +|||++        +||||||||+|||++. ++++||+|||+|+....             +++.|||||++.+..    
T Consensus       114 ~ylH~~~~~~~~~~~IiHRDlKp~NILl~~-~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~  192 (303)
T 3hmm_A          114 AHLHMEIVGTQGKPAIAHRDLKSKNILVKK-NGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKH  192 (303)
T ss_dssp             HHHHCCBCSTTCBCCEECSCCCGGGEEECT-TSCEEECCCTTCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTC
T ss_pred             HHHHHhhhhccCCCCEeeccCCcccEEECC-CCCEEEEeCCCCccccCCCCceeeecccccccccccCHHHhcccccccC
Confidence            999987        9999999999999998 89999999999976532             347899999775432    


Q ss_pred             -CCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHH
Q 005958          300 -QMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLS  378 (667)
Q Consensus       300 -~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~  378 (667)
                       .|+.++|||||||++|||++|.+||.........+......................................+.+|+.
T Consensus       193 ~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~  272 (303)
T 3hmm_A          193 FESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMR  272 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHH
T ss_pred             CccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHHHHHHHHhcccCCCCCCccccchHHHHHHHHHHH
Confidence             4678999999999999999999887632211111111100001111222222211111000000011123357889999


Q ss_pred             HhhhcCcCCCCCHHHHHcC
Q 005958          379 LLLATKPSKRISCLDALRH  397 (667)
Q Consensus       379 ~~L~~DP~kRpSa~elL~H  397 (667)
                      +||+.||++|||+.|++++
T Consensus       273 ~cl~~dP~~RPt~~ei~~~  291 (303)
T 3hmm_A          273 ECWYANGAARLTALRIKKT  291 (303)
T ss_dssp             TTCCSSGGGSCCHHHHHHH
T ss_pred             HHcccCHhHCcCHHHHHHH
Confidence            9999999999999999863

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=6.6e-46  Score=403.06  Aligned_cols=273  Identities=19%  Similarity=0.301  Sum_probs=205.9

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcc----hhhHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS----VQAQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~----~~~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      ....++|++++.||+|+||    +||+|.+..     +++.||||++..    ........+|+.+|+.+.     +|||
T Consensus         5 ~~~~~~y~~~~~lG~G~~g----~V~~~~~~~-----~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~-----~h~n   70 (388)
T 3oz6_A            5 RHVLRKYELVKKLGKGAYG----IVWKSIDRR-----TGEVVAVKKIFDAFQNSTDAQRTFREIMILTELS-----GHEN   70 (388)
T ss_dssp             HHHHTTEEEEEC-----------CEEEEEETT-----TCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTT-----TCTT
T ss_pred             CcccCceEEEEEeeeCCCe----EEEEEEECC-----CCCEEEEEEecccccChHHHHHHHHHHHHHHhcc-----CCCC
Confidence            3456899999999999999    999999998     899999999864    233456689999999996     6999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++...   +...+|+||| |+++ +|.+++...          .+++                    ..++.++
T Consensus        71 iv~l~~~~~~~---~~~~~~lv~e-~~~~-~L~~~~~~~----------~~~~--------------------~~~~~i~  115 (388)
T 3oz6_A           71 IVNLLNVLRAD---NDRDVYLVFD-YMET-DLHAVIRAN----------ILEP--------------------VHKQYVV  115 (388)
T ss_dssp             BCCEEEEEECT---TSSCEEEEEE-CCSE-EHHHHHHHT----------CCCH--------------------HHHHHHH
T ss_pred             CCeeeeEEecC---CCCEEEEEec-ccCc-CHHHHHHcC----------CCCH--------------------HHHHHHH
Confidence            99999999843   4568999999 9996 999999863          3444                    4567899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC------------------------------CCC
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE------------------------------DGP  287 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~------------------------------~~~  287 (667)
                      .||+.||+|||++||+||||||+|||++. ++.+||+|||+|+.+..                              +.+
T Consensus       116 ~qi~~~L~~LH~~~ivHrDlkp~NIll~~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  194 (388)
T 3oz6_A          116 YQLIKVIKYLHSGGLLHRDMKPSNILLNA-ECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATR  194 (388)
T ss_dssp             HHHHHHHHHHHHTTEECCCCCGGGEEECT-TCCEEECCCTTCEESSSCCCCCCCGGGCCC---------------CCCGG
T ss_pred             HHHHHHHHHHHhCCEEeCCCCHHHeEEcC-CCCEEecCCcccccccccccccccccccccccccccccccccccCCcccC
Confidence            99999999999999999999999999998 89999999999976532                              236


Q ss_pred             CCCCcccccCCCCCCchhhHHHHHHHHHHHHhCCCCChh---hhhhhhhhhccCCChhHHH---------HHHHHHhccC
Q 005958          288 NNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPL---IFTKFKSFLTKGIDPSCLR---------EFLLQVLNRN  355 (667)
Q Consensus       288 ~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG~~PF~~---~~~~~~~~~~~g~~~~~l~---------~~~~~~~~~~  355 (667)
                      .|+|||++.+...|+.++|||||||++|||++|++||++   ..+...++...|.+.....         .++.......
T Consensus       195 ~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  274 (388)
T 3oz6_A          195 WYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMNQLERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKV  274 (388)
T ss_dssp             GGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHC
T ss_pred             CcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCcccc
Confidence            699999887777899999999999999999999999974   2333444444444432211         1111000000


Q ss_pred             ---CCCCCCCc----------ccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          356 ---SSSGNTGF----------QILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       356 ---~~~~~~~~----------~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                         .......+          .....+++++++||.+||++||++|||++|+|+||||+...
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t~~e~l~Hp~~~~~~  336 (388)
T 3oz6_A          275 EIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNPNKRISANDALKHPFVSIFH  336 (388)
T ss_dssp             C-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSGGGSCCHHHHTTSTTTTTTC
T ss_pred             cccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCcccCCCHHHHhCCHHHHHhc
Confidence               00000000          11236789999999999999999999999999999998754

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=1.5e-45  Score=383.81  Aligned_cols=258  Identities=22%  Similarity=0.346  Sum_probs=204.4

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      +++|++.+.||+|+||    +||+|++..     +++.||||++...    .......+|+.++++++      ||||++
T Consensus         1 l~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~------h~~iv~   65 (292)
T 3o0g_A            1 MQKYEKLEKIGEGTYG----TVFKAKNRE-----THEIVALKRVRLDDDDEGVPSSALREICLLKELK------HKNIVR   65 (292)
T ss_dssp             CCSEEEEEEEEECSSS----EEEEEEETT-----TCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCC------CTTBCC
T ss_pred             CCCceeeeEecCCCCe----EEEEEEECC-----CCceEEEEeeeccCCcCCcchHHHHHHHHHhcCC------CCCEee
Confidence            4789999999999999    999999998     7999999999752    22356789999999994      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     +.+.+++||| |+++ +|.+++....        ..+++                    ..++.++.||
T Consensus        66 ~~~~~~-----~~~~~~lv~e-~~~~-~l~~~~~~~~--------~~l~~--------------------~~~~~~~~ql  110 (292)
T 3o0g_A           66 LHDVLH-----SDKKLTLVFE-FCDQ-DLKKYFDSCN--------GDLDP--------------------EIVKSFLFQL  110 (292)
T ss_dssp             EEEEEE-----ETTEEEEEEE-CCSE-EHHHHHHHTT--------TCCCH--------------------HHHHHHHHHH
T ss_pred             EEeEEE-----eCCEEEEEEe-cCCC-CHHHHHHhCC--------CCCCH--------------------HHHHHHHHHH
Confidence            999998     7789999999 9997 7877776532        14554                    4578899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      +.||+|||++||+||||||+|||++. ++.+||+|||+|......         .+.|+|||++.+...|+.++||||||
T Consensus       111 ~~~l~~lH~~~ivH~dikp~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG  189 (292)
T 3o0g_A          111 LKGLGFCHSRNVLHRDLKPQNLLINR-NGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAG  189 (292)
T ss_dssp             HHHHHHHHHTTEECCCCSGGGEEECT-TSCEEECCCTTCEECCSCCSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHH
T ss_pred             HHHHHHHHhCCeecCCCCHHHEEEcC-CCCEEEeecccceecCCccccccCCccccCCcChHHHcCCCCcCchHHHHHHH
Confidence            99999999999999999999999998 899999999999865432         35699999877777799999999999


Q ss_pred             HHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCC-------------------CCCCcccccCCCHH
Q 005958          312 FMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSS-------------------GNTGFQILDRNWGA  372 (667)
Q Consensus       312 viLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~-------------------~~~~~~~~~~~s~e  372 (667)
                      |++|+|++|..||.           .+.........+..........                   ........+..+++
T Consensus       190 ~il~~l~~~~~p~~-----------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (292)
T 3o0g_A          190 CIFAELANAGRPLF-----------PGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNAT  258 (292)
T ss_dssp             HHHHHHTTTSCCSC-----------CCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHH
T ss_pred             HHHHHHHHcCCCCc-----------CCCCHHHHHHHHHHHhCCCChhhhhhhcccccccccccccCCcchhhcccccChH
Confidence            99999998877642           1122222112221111111110                   11112234568899


Q ss_pred             HHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          373 GWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       373 ~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      +++||.+||+.||++|||++|+|+||||++..
T Consensus       259 ~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~  290 (292)
T 3o0g_A          259 GRDLLQNLLKCNPVQRISAEEALQHPYFSDFC  290 (292)
T ss_dssp             HHHHHHHHSCSSGGGSCCHHHHHTSGGGTTC-
T ss_pred             HHHHHHHHhccChhhCCCHHHHhcCcccccCC
Confidence            99999999999999999999999999999754

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=7.1e-46  Score=398.22  Aligned_cols=254  Identities=20%  Similarity=0.274  Sum_probs=209.3

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMY  154 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~  154 (667)
                      ...+.+++|++.+.||+|+||    .||+|+++.     +++.||||++++..     ..+...+|..++..+.     .
T Consensus        11 ~~~~~~~~y~~~~~lG~G~fg----~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~-----~   76 (345)
T 1xjd_A           11 QIKLKIEDFILHKMLGKGSFG----KVFLAEFKK-----TNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAW-----E   76 (345)
T ss_dssp             -----CTTEEEEEEEEECSSS----EEEEEEETT-----TTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHT-----T
T ss_pred             cCCCChHHeEEEEEEeeCCCe----EEEEEEECC-----CCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcC-----C
Confidence            345678999999999999999    999999998     89999999997642     2345688999999874     5


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      ||||+++++++.     +.+.+|+||| |+++|+|.+++...+         .+++                    ..++
T Consensus        77 hp~iv~l~~~~~-----~~~~~~lv~E-~~~gg~L~~~l~~~~---------~~~~--------------------~~~~  121 (345)
T 1xjd_A           77 HPFLTHMFCTFQ-----TKENLFFVME-YLNGGDLMYHIQSCH---------KFDL--------------------SRAT  121 (345)
T ss_dssp             CTTBCCEEEEEE-----CSSEEEEEEE-CCTTCBHHHHHHHHS---------SCCH--------------------HHHH
T ss_pred             CCCCCcEEEEEE-----eCCEEEEEEe-CCCCCcHHHHHHHcC---------CCCH--------------------HHHH
Confidence            999999999999     7889999999 999999999998754         4555                    4567


Q ss_pred             HHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchh
Q 005958          235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAF  305 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ks  305 (667)
                      .++.||+.||+|||++||+||||||+|||++. ++++||+|||+|+....         +.+.|+|||++. ...|+.++
T Consensus       122 ~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~-~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~  199 (345)
T 1xjd_A          122 FYAAEIILGLQFLHSKGIVYRDLKLDNILLDK-DGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILL-GQKYNHSV  199 (345)
T ss_dssp             HHHHHHHHHHHHHHHTTCBCCCCCGGGEEECT-TSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHT-TCCBCTHH
T ss_pred             HHHHHHHHHHHHHHHCCeEeCCCChhhEEECC-CCCEEEeEChhhhhcccCCCcccCCCCCcccCChhhhc-CCCCCChh
Confidence            89999999999999999999999999999998 89999999999975422         236799999655 45689999


Q ss_pred             hHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCc
Q 005958          306 DMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       306 DIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      |||||||++|||++|.+||.            +.+...+...+   ....       ......+++++++||.+||+.||
T Consensus       200 DiwslG~il~ell~g~~Pf~------------~~~~~~~~~~i---~~~~-------~~~p~~~s~~~~~li~~lL~~dp  257 (345)
T 1xjd_A          200 DWWSFGVLLYEMLIGQSPFH------------GQDEEELFHSI---RMDN-------PFYPRWLEKEAKDLLVKLFVREP  257 (345)
T ss_dssp             HHHHHHHHHHHHHHSSCSSC------------CSSHHHHHHHH---HHCC-------CCCCTTSCHHHHHHHHHHSCSSG
T ss_pred             hhHHHHHHHHHHhcCCCCCC------------CCCHHHHHHHH---HhCC-------CCCCcccCHHHHHHHHHHhcCCH
Confidence            99999999999999999985            22333322222   2221       12234578999999999999999


Q ss_pred             CCCCCHH-HHHcCCCCCCCCCC
Q 005958          386 SKRISCL-DALRHPFLCGPRWR  406 (667)
Q Consensus       386 ~kRpSa~-elL~HPwf~~~~~~  406 (667)
                      ++||++. ++++||||++.+|.
T Consensus       258 ~~R~~~~~~i~~hp~f~~~~w~  279 (345)
T 1xjd_A          258 EKRLGVRGDIRQHPLFREINWE  279 (345)
T ss_dssp             GGSBTTBSCGGGSGGGTTCCHH
T ss_pred             hHcCCChHHHHcCccccCCCHH
Confidence            9999998 99999999998863

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=9.9e-46  Score=392.39  Aligned_cols=250  Identities=17%  Similarity=0.251  Sum_probs=210.3

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      +.+++|++++.||+|+||    .||+|+++.     +++.||+|++.+..     ..+.+.+|+.+++.+      .|||
T Consensus         3 ~~~~~y~~~~~lG~G~~g----~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l------~hp~   67 (318)
T 1fot_A            3 YSLQDFQILRTLGTGSFG----RVHLIRSRH-----NGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIV------THPF   67 (318)
T ss_dssp             CCGGGEEEEEEEEECSSC----EEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSC------CBTT
T ss_pred             CChHHcEEEEEEeeCCCE----EEEEEEECC-----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhC------CCCC
Confidence            567899999999999999    999999997     89999999997642     234567899999988      4999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     +.+.+|+||| |+++|+|.+++...+         .+++                    ..++.++
T Consensus        68 Iv~~~~~~~-----~~~~~~lv~e-~~~gg~L~~~l~~~~---------~~~~--------------------~~~~~~~  112 (318)
T 1fot_A           68 IIRMWGTFQ-----DAQQIFMIMD-YIEGGELFSLLRKSQ---------RFPN--------------------PVAKFYA  112 (318)
T ss_dssp             BCCEEEEEE-----CSSEEEEEEC-CCCSCBHHHHHHHTS---------SCCH--------------------HHHHHHH
T ss_pred             CceEeEEEE-----eCCEEEEEEe-CCCCCCHHHHHHHcC---------CCCH--------------------HHHHHHH
Confidence            999999999     7889999999 999999999998754         4555                    4567899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC------CCCCCCCcccccCCCCCCchhhHHHHH
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE------DGPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~------~~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      .||+.||.|||++||+||||||+|||++. ++.+||+|||+|+....      +.+.|+|||++ ....|+.++||||||
T Consensus       113 ~qi~~aL~~LH~~~ivHrDlkp~NIll~~-~g~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DiwslG  190 (318)
T 1fot_A          113 AEVCLALEYLHSKDIIYRDLKPENILLDK-NGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVV-STKPYNKSIDWWSFG  190 (318)
T ss_dssp             HHHHHHHHHHHTTTEECCCCCGGGEEECT-TSCEEECCCSSCEECSSCBCCCCSCTTTCCHHHH-TTCCBCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHCCccccCCChheEEEcC-CCCEEEeecCcceecCCccccccCCccccCHhHh-cCCCCCcccchhhhH
Confidence            99999999999999999999999999998 89999999999986543      34789999955 455699999999999


Q ss_pred             HHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC--
Q 005958          312 FMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI--  389 (667)
Q Consensus       312 viLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp--  389 (667)
                      |++|||++|++||..            .......   ..+....       ...+..+++++++||.+||+.||++||  
T Consensus       191 ~il~ell~g~~pf~~------------~~~~~~~---~~i~~~~-------~~~p~~~~~~~~~li~~lL~~dp~~R~~~  248 (318)
T 1fot_A          191 ILIYEMLAGYTPFYD------------SNTMKTY---EKILNAE-------LRFPPFFNEDVKDLLSRLITRDLSQRLGN  248 (318)
T ss_dssp             HHHHHHHHSSCTTCC------------SSHHHHH---HHHHHCC-------CCCCTTSCHHHHHHHHHHTCSCTTTCTTS
T ss_pred             HHHHHHHhCCCCCCC------------CCHHHHH---HHHHhCC-------CCCCCCCCHHHHHHHHHHhccCHHHcCCC
Confidence            999999999999852            2222222   2222221       123356789999999999999999999  


Q ss_pred             ---CHHHHHcCCCCCCCCCC
Q 005958          390 ---SCLDALRHPFLCGPRWR  406 (667)
Q Consensus       390 ---Sa~elL~HPwf~~~~~~  406 (667)
                         +++|+++||||++..|.
T Consensus       249 ~~~~~~~i~~hp~f~~~~~~  268 (318)
T 1fot_A          249 LQNGTEDVKNHPWFKEVVWE  268 (318)
T ss_dssp             STTTTHHHHTSGGGSSCCHH
T ss_pred             cCCCHHHHhcCccccCCCHH
Confidence               99999999999998863

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=1.1e-45  Score=403.86  Aligned_cols=262  Identities=19%  Similarity=0.299  Sum_probs=210.5

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-----HHHHHHHHHHHHHHhhccCCCC
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-----QRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-----~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      ..+.+++|++++.||+|+||    +||+|+++.     +++.||+|++++...     .+.+.+|..+|.++.     +|
T Consensus        47 ~~~~~~~y~~~~~LG~G~fG----~V~~~~~~~-----~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~-----~h  112 (396)
T 4dc2_A           47 SSLGLQDFDLLRVIGRGSYA----KVLLVRLKK-----TDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQAS-----NH  112 (396)
T ss_dssp             --CCGGGEEEEEEEEECSSE----EEEEEEETT-----TTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHT-----TC
T ss_pred             cCCChhHcEEEEEEeeCCCe----EEEEEEECC-----CCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcC-----CC
Confidence            34677899999999999999    999999998     899999999986422     234688999999985     69


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      |||+++++++.     +.+.+||||| |+++|+|.+++.+.+         .+++                    ..++.
T Consensus       113 p~Iv~l~~~~~-----~~~~~~lV~E-~~~gg~L~~~l~~~~---------~l~~--------------------~~~~~  157 (396)
T 4dc2_A          113 PFLVGLHSCFQ-----TESRLFFVIE-YVNGGDLMFHMQRQR---------KLPE--------------------EHARF  157 (396)
T ss_dssp             TTBCCEEEEEE-----CSSEEEEEEE-CCTTCBHHHHHHHHS---------SCCH--------------------HHHHH
T ss_pred             CCcCeeEEEEE-----ECCEEEEEEE-cCCCCcHHHHHHHcC---------CCCH--------------------HHHHH
Confidence            99999999999     7889999999 999999999998754         5665                    45688


Q ss_pred             HHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhh
Q 005958          236 LMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       236 i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksD  306 (667)
                      |+.||+.||.|||++||+||||||+|||++. ++++||+|||+|+....         +.+.|+|||++. ...|+.++|
T Consensus       158 ~~~qi~~aL~~LH~~givHrDLKp~NILl~~-~g~ikL~DFGla~~~~~~~~~~~~~~gt~~Y~aPE~l~-~~~~~~~~D  235 (396)
T 4dc2_A          158 YSAEISLALNYLHERGIIYRDLKLDNVLLDS-EGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILR-GEDYGFSVD  235 (396)
T ss_dssp             HHHHHHHHHHHHHHTTCBCCCCCGGGEEECT-TSCEEECCCTTCBCCCCTTCCBCCCCBCGGGCCHHHHT-TCCBCTHHH
T ss_pred             HHHHHHHHHHHHHHCCEEeccCCHHHEEECC-CCCEEEeecceeeecccCCCccccccCCcccCCchhhc-CCCCChHHH
Confidence            9999999999999999999999999999998 89999999999975322         236799999654 456999999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          307 MRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       307 IWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      ||||||++|||++|++||........   ........+   ...+....       ...+..+++++++||.+||+.||+
T Consensus       236 iwslGvllyell~G~~Pf~~~~~~~~---~~~~~~~~~---~~~i~~~~-------~~~p~~~s~~~~~li~~lL~~dP~  302 (396)
T 4dc2_A          236 WWALGVLMFEMMAGRSPFDIVGSSDN---PDQNTEDYL---FQVILEKQ-------IRIPRSLSVKAASVLKSFLNKDPK  302 (396)
T ss_dssp             HHHHHHHHHHHHHSSCSSTTTTC---------CCHHHH---HHHHHHCC-------CCCCTTSCHHHHHHHHHHTCSCTT
T ss_pred             HHHHHHHHHHHHhCCCCCcccccccc---cchhhHHHH---HHHHhccc-------cCCCCcCCHHHHHHHHHHhcCCHh
Confidence            99999999999999999952210000   000111112   22222221       233456889999999999999999


Q ss_pred             CCCCH------HHHHcCCCCCCCCCC
Q 005958          387 KRISC------LDALRHPFLCGPRWR  406 (667)
Q Consensus       387 kRpSa------~elL~HPwf~~~~~~  406 (667)
                      +||++      +|+++||||++++|.
T Consensus       303 ~R~~~~~~~~~~ei~~Hpff~~i~w~  328 (396)
T 4dc2_A          303 ERLGCHPQTGFADIQGHPFFRNVDWD  328 (396)
T ss_dssp             TSTTCSTTTHHHHHHHSTTTTTCCHH
T ss_pred             HcCCCCCCCCHHHHhcCccccCCCHH
Confidence            99995      799999999998873

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=6.7e-46  Score=400.79  Aligned_cols=251  Identities=19%  Similarity=0.265  Sum_probs=207.5

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--------hHHHHHHHHHHHHHHhhccCCCCC
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--------AQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--------~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      .++|++++.||+|+||    +||+|+++.     +++.||+|++....        ..+.+.+|+.+|+.+.      ||
T Consensus        11 ~~~y~~~~~LG~G~fg----~V~~~~~~~-----~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~------hp   75 (361)
T 2yab_A           11 EDFYDIGEELGSGQFA----IVKKCREKS-----TGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVL------HP   75 (361)
T ss_dssp             GGTEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCC------CT
T ss_pred             hhceEEeeEEeeCcCE----EEEEEEECC-----CCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCC------Cc
Confidence            4789999999999999    999999998     89999999997632        2356789999999994      99


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++.     +.+.+|+||| |+++|+|.+++...+         .++|                    ..++.+
T Consensus        76 nIv~l~~~~~-----~~~~~~lv~e-~~~gg~L~~~l~~~~---------~l~~--------------------~~~~~i  120 (361)
T 2yab_A           76 NIITLHDVYE-----NRTDVVLILE-LVSGGELFDFLAQKE---------SLSE--------------------EEATSF  120 (361)
T ss_dssp             TBCCEEEEEE-----CSSEEEEEEE-CCCSCBHHHHHTTCS---------CCBH--------------------HHHHHH
T ss_pred             CCCcEEEEEE-----eCCEEEEEEE-cCCCCcHHHHHHhcC---------CCCH--------------------HHHHHH
Confidence            9999999999     7889999999 999999999997654         4555                    457889


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCC----eEEEeeecccccccCC--------CCCCCCcccccCCCCCCch
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDR----HIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~----~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~k  304 (667)
                      +.||+.||.|||++||+||||||+|||++. ++    .+||+|||++......        .+.|+|||++ ....|+.+
T Consensus       121 ~~qi~~aL~~LH~~givHrDlkp~NIll~~-~~~~~~~vkl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~  198 (361)
T 2yab_A          121 IKQILDGVNYLHTKKIAHFDLKPENIMLLD-KNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIV-NYEPLGLE  198 (361)
T ss_dssp             HHHHHHHHHHHHHTTEECCCCSGGGEEESC-TTSSSCCEEECCCSSCEECCTTCCCCCCCSCGGGCCHHHH-TTCCCCTH
T ss_pred             HHHHHHHHHHHHHCCcccCCCCHHHEEEeC-CCCCccCEEEEecCCceEcCCCCccccCCCCccEECchHH-cCCCCCcc
Confidence            999999999999999999999999999987 44    7999999999876543        3679999955 45569999


Q ss_pred             hhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          305 FDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       305 sDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      +|||||||++|+|++|.+||.            +.........   +......   .....+..+++++++||.+||..|
T Consensus       199 ~DiwslGvil~~ll~g~~Pf~------------~~~~~~~~~~---i~~~~~~---~~~~~~~~~s~~~~~li~~~L~~d  260 (361)
T 2yab_A          199 ADMWSIGVITYILLSGASPFL------------GDTKQETLAN---ITAVSYD---FDEEFFSQTSELAKDFIRKLLVKE  260 (361)
T ss_dssp             HHHHHHHHHHHHHHHSCCSSC------------CSSHHHHHHH---HHTTCCC---CCHHHHTTSCHHHHHHHHHHSCSS
T ss_pred             ccHHHHHHHHHHHHhCCCCCC------------CCCHHHHHHH---HHhcCCC---CCchhccCCCHHHHHHHHHHCCCC
Confidence            999999999999999999995            2222222222   2211111   111234578899999999999999


Q ss_pred             cCCCCCHHHHHcCCCCCCCCC
Q 005958          385 PSKRISCLDALRHPFLCGPRW  405 (667)
Q Consensus       385 P~kRpSa~elL~HPwf~~~~~  405 (667)
                      |++|||+.|+|+||||++..|
T Consensus       261 P~~R~t~~e~l~hp~~~~~~~  281 (361)
T 2yab_A          261 TRKRLTIQEALRHPWITPVDT  281 (361)
T ss_dssp             TTTSCCHHHHHTSTTTSCSSH
T ss_pred             hhHCcCHHHHhcCcCcCCCch
Confidence            999999999999999998663

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=2e-45  Score=405.86  Aligned_cols=277  Identities=21%  Similarity=0.248  Sum_probs=217.2

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      .++|++.+.||+|+||    +||+|++..     +++.||||++...    ...+.+.+|+.+|+.++      ||||++
T Consensus        25 ~~~y~~~~~lG~G~~g----~V~~a~~~~-----~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~------h~nIv~   89 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSYG----YVYLAYDKN-----TEKNVAIKKVNRMFEDLIDCKRILREITILNRLK------SDYIIR   89 (432)
T ss_dssp             CTTEEEEEEEEEETTE----EEEEEEETT-----TTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCC------CTTBCC
T ss_pred             cCCEEEEEEEeecCCE----EEEEEEECC-----CCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcC------CCCcce
Confidence            4789999999999999    999999998     8999999999752    23356789999999995      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++..........+|+||| |+++ +|.+++....         .+++                    ..++.+++||
T Consensus        90 l~~~~~~~~~~~~~~~~lv~e-~~~~-~L~~~~~~~~---------~l~~--------------------~~~~~i~~qi  138 (432)
T 3n9x_A           90 LYDLIIPDDLLKFDELYIVLE-IADS-DLKKLFKTPI---------FLTE--------------------EHIKTILYNL  138 (432)
T ss_dssp             EEEECCCSCTTTCCCEEEEEE-CCSE-EHHHHHHSSC---------CCCH--------------------HHHHHHHHHH
T ss_pred             EEEEEecCCCCcCCeEEEEEe-cCCc-CHHHHHhccC---------CCCH--------------------HHHHHHHHHH
Confidence            999997443223378999999 9987 9999998753         4554                    4578899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-------------------------------CCCC
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-------------------------------GPNN  289 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-------------------------------~~~Y  289 (667)
                      +.||.|||++||+||||||+|||++. ++.+||+|||+|+.....                               .+.|
T Consensus       139 l~aL~~LH~~givHrDlkp~NILl~~-~~~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  217 (432)
T 3n9x_A          139 LLGENFIHESGIIHRDLKPANCLLNQ-DCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWY  217 (432)
T ss_dssp             HHHHHHHHHTTEECCCCCGGGEEECT-TCCEEECCCTTCEEC-------------------------------CCCCCTT
T ss_pred             HHHHHHHHHCCCCCCCCCHHHeEECC-CCCEEEccCCCcccccccccccccccccccccccccccchhccccCCCCCccc
Confidence            99999999999999999999999998 899999999999865422                               3679


Q ss_pred             CCcccccCCCCCCchhhHHHHHHHHHHHHh-----------CCCCChh--------------------hhhhhhhhhccC
Q 005958          290 SSPDSNMDRRQMMIAFDMRCVGFMMAKMVL-----------RELMDPL--------------------IFTKFKSFLTKG  338 (667)
Q Consensus       290 ~APE~l~~~~~ys~ksDIWSLGviLyemlt-----------G~~PF~~--------------------~~~~~~~~~~~g  338 (667)
                      +|||++.....|+.++|||||||++|||++           |.++|++                    .+++..++...|
T Consensus       218 ~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~ql~~i~~~~g  297 (432)
T 3n9x_A          218 RAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHINDPTNRFPLFPGSSCFPLSPDRNSKKVHEKSNRDQLNIIFNIIG  297 (432)
T ss_dssp             CCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTCSSGGGCCCSCCCSCSCC----------CHHHHHHHHHHHHHHHC
T ss_pred             cCHHHHhcCCCCCcccccchHHHHHHHHHhcccccccccccccccCCCccccccCcccccccccccchHHHHHHHHHhcC
Confidence            999987777889999999999999999998           4555542                    234455555566


Q ss_pred             CChhHHHHH-----HHHHhccCCCCCC-CCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCCCCCC
Q 005958          339 IDPSCLREF-----LLQVLNRNSSSGN-TGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPRWRVD  408 (667)
Q Consensus       339 ~~~~~l~~~-----~~~~~~~~~~~~~-~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~~~~~  408 (667)
                      .++......     ............. ......+.+++++++||.+||++||++|||++|+|+||||++..+...
T Consensus       298 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~~~~~  373 (432)
T 3n9x_A          298 TPTEDDLKNINKPEVIKYIKLFPHRKPINLKQKYPSISDDGINLLESMLKFNPNKRITIDQALDHPYLKDVRKKKL  373 (432)
T ss_dssp             SCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTCGGGTTTCCTTT
T ss_pred             CCCHHHHHhccCHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHhcCCcccCCCHHHHhcChhhhhccCccc
Confidence            655432211     1111111111111 111234678999999999999999999999999999999999887544

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=1.3e-45  Score=392.03  Aligned_cols=273  Identities=21%  Similarity=0.318  Sum_probs=205.0

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh----HHHHHHHHHHHHHHhhccCCCCCc
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA----QRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~----~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      ...+++|++++.||+|+||    +||+|++..     +++.||||++.....    .+.+.+|+.++++++      |||
T Consensus        30 ~~~~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~------h~~   94 (329)
T 3gbz_A           30 ATSIDRYRRITKLGEGTYG----EVYKAIDTV-----TNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQ------HRN   94 (329)
T ss_dssp             --CGGGEEEEEEEEECSSS----EEEEEEETT-----TTEEEEEEECCCCC--------CHHHHHHGGGCC------CTT
T ss_pred             ccchhhEEEEEEEEecCCe----EEEEEEECC-----CCceEEEEEEcccccccccchhHHHHHHHHHHcC------CCC
Confidence            3556899999999999999    999999998     899999999975322    234578999999994      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     ..+.+|+||| |+++ +|.+++....         .+++                    ..++.++
T Consensus        95 iv~~~~~~~-----~~~~~~lv~e-~~~~-~L~~~~~~~~---------~~~~--------------------~~~~~i~  138 (329)
T 3gbz_A           95 IIELKSVIH-----HNHRLHLIFE-YAEN-DLKKYMDKNP---------DVSM--------------------RVIKSFL  138 (329)
T ss_dssp             BCCEEEEEE-----ETTEEEEEEE-CCSE-EHHHHHHHCT---------TCCH--------------------HHHHHHH
T ss_pred             cceEEEEEe-----cCCEEEEEEe-cCCC-CHHHHHhhcC---------CCCH--------------------HHHHHHH
Confidence            999999998     7789999999 9997 9999998764         3554                    4578899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcC----CCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCch
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISP----VDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~----~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~k  304 (667)
                      .||+.||.|||++||+||||||+|||++.    .++.+||+|||+|......         .+.|+|||++.+...|+.+
T Consensus       139 ~ql~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~  218 (329)
T 3gbz_A          139 YQLINGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIPIRQFTHEIITLWYRPPEILLGSRHYSTS  218 (329)
T ss_dssp             HHHHHHHHHHHHTTCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC-----------CCTTCCHHHHTTCCCCCTH
T ss_pred             HHHHHHHHHHHhCCEECCCCCHHHEEEecCCCCccceEEECcCCCccccCCcccccCCCcCCccccCHHHhcCCCCCCcH
Confidence            99999999999999999999999999953    2456999999999765422         3679999987777779999


Q ss_pred             hhHHHHHHHHHHHHhCCCCChhh---hhhhhhhhccCCChhHHHHHHHHHhccCC----CCCCCCc--ccccCCCHHHHH
Q 005958          305 FDMRCVGFMMAKMVLRELMDPLI---FTKFKSFLTKGIDPSCLREFLLQVLNRNS----SSGNTGF--QILDRNWGAGWN  375 (667)
Q Consensus       305 sDIWSLGviLyemltG~~PF~~~---~~~~~~~~~~g~~~~~l~~~~~~~~~~~~----~~~~~~~--~~~~~~s~e~~d  375 (667)
                      +|||||||++|||++|.+||...   .....++...+.+......... ....+.    .......  .....+++++++
T Consensus       219 ~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (329)
T 3gbz_A          219 VDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLGLPDDTTWPGVT-ALPDWKQSFPKFRGKTLKRVLGALLDDEGLD  297 (329)
T ss_dssp             HHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSTTGG-GSTTCCTTCCCCCCCCHHHHHGGGSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCcCCCCHHHHHHHHHHHhCCCchhhhhhhh-hhhhhhhhhhhhccccHhhhcccccCHHHHH
Confidence            99999999999999999999632   1111111111111110000000 000000    0000000  011236789999


Q ss_pred             HHHHhhhcCcCCCCCHHHHHcCCCCCCCCCC
Q 005958          376 LLSLLLATKPSKRISCLDALRHPFLCGPRWR  406 (667)
Q Consensus       376 LI~~~L~~DP~kRpSa~elL~HPwf~~~~~~  406 (667)
                      ||.+||++||++|||++|+|+||||++.+|.
T Consensus       298 li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~  328 (329)
T 3gbz_A          298 LLTAMLEMDPVKRISAKNALEHPYFSHNDFD  328 (329)
T ss_dssp             HHHHHTCSSGGGSCCHHHHHTSGGGSSSCSC
T ss_pred             HHHHHccCChhhCCCHHHHhCCcccCCCCCC
Confidence            9999999999999999999999999998864

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=2.6e-45  Score=393.50  Aligned_cols=261  Identities=19%  Similarity=0.293  Sum_probs=210.1

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCC
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      .+.+++|++++.||+|+||    .||+|+++.     +++.||||++.+..     ..+.+.+|+.+++++.     +||
T Consensus         5 ~~~~~~y~~~~~lG~G~fg----~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~-----~hp   70 (345)
T 3a8x_A            5 PLGLQDFDLLRVIGRGSYA----KVLLVRLKK-----TDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQAS-----NHP   70 (345)
T ss_dssp             CCCGGGEEEEEEEEECSSE----EEEEEEETT-----TTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTT-----TCT
T ss_pred             CCchhheEEEEEEEecCCe----EEEEEEECC-----CCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcC-----CCC
Confidence            4567899999999999999    999999998     89999999997532     2345688999999885     599


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++.     +.+.+|+||| |+++|+|.+++.+.+         .+++                    ..++.+
T Consensus        71 ~iv~l~~~~~-----~~~~~~lv~e-~~~gg~L~~~l~~~~---------~l~~--------------------~~~~~~  115 (345)
T 3a8x_A           71 FLVGLHSCFQ-----TESRLFFVIE-YVNGGDLMFHMQRQR---------KLPE--------------------EHARFY  115 (345)
T ss_dssp             TBCCEEEEEE-----CSSEEEEEEC-CCCSCBHHHHHHHHS---------SCCH--------------------HHHHHH
T ss_pred             ccCeEEEEEE-----eCCEEEEEEe-CCCCCcHHHHHHHcC---------CCCH--------------------HHHHHH
Confidence            9999999999     7889999999 999999999998754         4555                    457889


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhH
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDI  307 (667)
                      +.||+.||.|||++||+||||||+|||++. ++++||+|||+|+....         +.+.|+|||++. ...|+.++||
T Consensus       116 ~~qi~~aL~~LH~~~ivHrDlkp~NIll~~-~g~~kL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~Di  193 (345)
T 3a8x_A          116 SAEISLALNYLHERGIIYRDLKLDNVLLDS-EGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILR-GEDYGFSVDW  193 (345)
T ss_dssp             HHHHHHHHHHHHHTTCBCCCCCGGGEEECT-TSCEEECCGGGCBCSCCTTCCBCCCCSCGGGCCHHHHT-TCCBCTHHHH
T ss_pred             HHHHHHHHHHHHHCCceecCCCHHHEEECC-CCCEEEEeccccccccCCCCcccccCCCccccCccccC-CCCCChHHhH
Confidence            999999999999999999999999999998 89999999999975321         236899999654 4568999999


Q ss_pred             HHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          308 RCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       308 WSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      |||||++|||++|++||........   .......   .....+....       ...+..+++++++||.+||+.||++
T Consensus       194 wslG~il~ell~g~~pf~~~~~~~~---~~~~~~~---~~~~~i~~~~-------~~~p~~~s~~~~~li~~lL~~dP~~  260 (345)
T 3a8x_A          194 WALGVLMFEMMAGRSPFDIVGSSDN---PDQNTED---YLFQVILEKQ-------IRIPRSLSVKAASVLKSFLNKDPKE  260 (345)
T ss_dssp             HHHHHHHHHHHHSSCTTTTTTC----------CHH---HHHHHHHHCC-------CCCCTTSCHHHHHHHHHHTCSSTTT
T ss_pred             HHHHHHHHHHHhCCCCcCCcccccc---cccccHH---HHHHHHHcCC-------CCCCCCCCHHHHHHHHHHhcCCHhH
Confidence            9999999999999999952110000   0001111   1122222221       2234567899999999999999999


Q ss_pred             CCCH------HHHHcCCCCCCCCCC
Q 005958          388 RISC------LDALRHPFLCGPRWR  406 (667)
Q Consensus       388 RpSa------~elL~HPwf~~~~~~  406 (667)
                      ||++      +|+++||||++.+|.
T Consensus       261 R~~~~~~~~~~~i~~hp~f~~~~w~  285 (345)
T 3a8x_A          261 RLGCHPQTGFADIQGHPFFRNVDWD  285 (345)
T ss_dssp             STTCCTTTHHHHHHTSGGGTTCCHH
T ss_pred             CCCCCCcCCHHHHhcCCccCCCCHH
Confidence            9995      899999999998863

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=3.6e-45  Score=380.42  Aligned_cols=266  Identities=22%  Similarity=0.290  Sum_probs=204.0

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      +++|++++.||+|+||    +||+|++.      +++.||+|++....    ..+.+.+|++++++++      ||||++
T Consensus         1 ~~~y~~~~~lg~G~~g----~V~~~~~~------~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~------h~~iv~   64 (288)
T 1ob3_A            1 MEKYHGLEKIGEGTYG----VVYKAQNN------YGETFALKKIRLEKEDEGIPSTTIREISILKELK------HSNIVK   64 (288)
T ss_dssp             CCSEEEEEEEEEETTE----EEEEEEET------TSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCC------CTTBCC
T ss_pred             CccchhhhhcccCCCE----EEEEEEcC------CCCEEEEEEEeccccccccchhHHHHHHHHHhcC------CCCEee
Confidence            4789999999999999    99999984      68999999997532    2256789999999994      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     ..+.+++||| |+++ +|.+++....        ..+++                    ..++.++.||
T Consensus        65 ~~~~~~-----~~~~~~lv~e-~~~~-~l~~~~~~~~--------~~~~~--------------------~~~~~~~~qi  109 (288)
T 1ob3_A           65 LYDVIH-----TKKRLVLVFE-HLDQ-DLKKLLDVCE--------GGLES--------------------VTAKSFLLQL  109 (288)
T ss_dssp             EEEEEE-----CSSCEEEEEE-CCSE-EHHHHHHTST--------TCCCH--------------------HHHHHHHHHH
T ss_pred             eeeEEc-----cCCeEEEEEE-ecCC-CHHHHHHhcc--------cCCCH--------------------HHHHHHHHHH
Confidence            999998     7789999999 9997 9999998642        13444                    4577899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      +.||.|||++||+||||||+|||++. ++.+||+|||++.....         +.+.|+|||++.+...|+.++||||||
T Consensus       110 ~~~l~~lH~~~i~H~dlkp~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG  188 (288)
T 1ob3_A          110 LNGIAYCHDRRVLHRDLKPQNLLINR-EGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVG  188 (288)
T ss_dssp             HHHHHHHHHTTCCCSCCCGGGEEECT-TSCEEECCTTHHHHHCC---------CCCTTCCHHHHTTCCSCCTHHHHHHHH
T ss_pred             HHHHHHHHHCCeecCCCCHHHEEEcC-CCCEEEeECccccccCccccccccccccccccCchheeCCCCCCcHHHHHHHH
Confidence            99999999999999999999999998 89999999999976542         247799999877767799999999999


Q ss_pred             HHHHHHHhCCCCChhhh---hhhhhhhccCCChhHHHHHHHHHhccCCCC-----CCCCcccccCCCHHHHHHHHHhhhc
Q 005958          312 FMMAKMVLRELMDPLIF---TKFKSFLTKGIDPSCLREFLLQVLNRNSSS-----GNTGFQILDRNWGAGWNLLSLLLAT  383 (667)
Q Consensus       312 viLyemltG~~PF~~~~---~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~s~e~~dLI~~~L~~  383 (667)
                      |++|||++|++||....   ....++...+.+......... ......+.     ..........+++++++||.+||+.
T Consensus       189 ~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~  267 (288)
T 1ob3_A          189 CIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVT-ELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKL  267 (288)
T ss_dssp             HHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGG-GSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCS
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchhhh-cccccccccccccCccHHHHhhhcCHHHHHHHHHHcCC
Confidence            99999999999996321   111111111111100000000 00000000     0000122356789999999999999


Q ss_pred             CcCCCCCHHHHHcCCCCCCC
Q 005958          384 KPSKRISCLDALRHPFLCGP  403 (667)
Q Consensus       384 DP~kRpSa~elL~HPwf~~~  403 (667)
                      ||++|||++|+|+||||++.
T Consensus       268 dP~~Rpt~~e~l~hp~f~~~  287 (288)
T 1ob3_A          268 DPNQRITAKQALEHAYFKEN  287 (288)
T ss_dssp             STTTSCCHHHHHTSGGGGC-
T ss_pred             CcccCCCHHHHhcCcchhhc
Confidence            99999999999999999864

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=2.1e-45  Score=395.77  Aligned_cols=253  Identities=19%  Similarity=0.229  Sum_probs=209.1

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCC
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      ..+.+++|++++.||+|+||    .||+|+++.     +++.||||++++..     ..+...+|..+|..+.     .|
T Consensus        15 ~~~~~~~y~~~~~lG~G~fg----~V~~~~~~~-----~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~-----~h   80 (353)
T 2i0e_A           15 DRMKLTDFNFLMVLGKGSFG----KVMLSERKG-----TDELYAVKILKKDVVIQDDDVECTMVEKRVLALPG-----KP   80 (353)
T ss_dssp             ----CTTEEEEEEEEEETTE----EEEEEEETT-----EEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTT-----CC
T ss_pred             CCCchHHcEEEEEEeeCCCE----EEEEEEECC-----CCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcC-----CC
Confidence            45678999999999999999    999999997     79999999998642     2345678999998875     69


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      |||+++++++.     +.+.+|+||| |+++|+|.+++...+         .+++                    ..++.
T Consensus        81 p~iv~l~~~~~-----~~~~~~lv~E-~~~gg~L~~~l~~~~---------~~~~--------------------~~~~~  125 (353)
T 2i0e_A           81 PFLTQLHSCFQ-----TMDRLYFVME-YVNGGDLMYHIQQVG---------RFKE--------------------PHAVF  125 (353)
T ss_dssp             TTBCCEEEEEE-----CSSEEEEEEE-CCCSCBHHHHHHHHS---------SCCH--------------------HHHHH
T ss_pred             CEEeeEEEEEE-----cCCEEEEEEe-CCCCCcHHHHHHhcC---------CCCH--------------------HHHHH
Confidence            99999999999     7889999999 999999999998754         4665                    45678


Q ss_pred             HHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhh
Q 005958          236 LMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       236 i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksD  306 (667)
                      ++.||+.||.|||++||+||||||+|||++. ++++||+|||+|+....         +.+.|+|||++ ....|+.++|
T Consensus       126 ~~~qi~~aL~~LH~~givHrDlkp~NIll~~-~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~D  203 (353)
T 2i0e_A          126 YAAEIAIGLFFLQSKGIIYRDLKLDNVMLDS-EGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEII-AYQPYGKSVD  203 (353)
T ss_dssp             HHHHHHHHHHHHHHTTCBCCCCCGGGEEECT-TSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHH-TTCCBSTHHH
T ss_pred             HHHHHHHHHHHHHHCCEEeccCCHHHEEEcC-CCcEEEEeCCcccccccCCcccccccCCccccChhhh-cCCCcCCccc
Confidence            9999999999999999999999999999998 89999999999986322         23679999965 4556899999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          307 MRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       307 IWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      ||||||++|||++|++||.            +.+...+.+.   +....       ...+..+++++++||.+||+.||+
T Consensus       204 iwslG~il~ell~G~~Pf~------------~~~~~~~~~~---i~~~~-------~~~p~~~s~~~~~li~~lL~~dP~  261 (353)
T 2i0e_A          204 WWAFGVLLYEMLAGQAPFE------------GEDEDELFQS---IMEHN-------VAYPKSMSKEAVAICKGLMTKHPG  261 (353)
T ss_dssp             HHHHHHHHHHHHHSSCSSC------------CSSHHHHHHH---HHHCC-------CCCCTTSCHHHHHHHHHHTCSCTT
T ss_pred             ccchHHHHHHHHcCCCCCC------------CCCHHHHHHH---HHhCC-------CCCCCCCCHHHHHHHHHHhhcCHH
Confidence            9999999999999999985            2233332222   22221       223356889999999999999999


Q ss_pred             CCCC-----HHHHHcCCCCCCCCCC
Q 005958          387 KRIS-----CLDALRHPFLCGPRWR  406 (667)
Q Consensus       387 kRpS-----a~elL~HPwf~~~~~~  406 (667)
                      +||+     ++++++||||++++|.
T Consensus       262 ~R~~~~~~~~~~i~~h~~f~~~~w~  286 (353)
T 2i0e_A          262 KRLGCGPEGERDIKEHAFFRYIDWE  286 (353)
T ss_dssp             SCTTCSTTHHHHHHTSGGGTTCCHH
T ss_pred             HcCCCCCCCHHHHhcCccccCCCHH
Confidence            9994     6999999999998873

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=3.4e-45  Score=398.54  Aligned_cols=256  Identities=16%  Similarity=0.234  Sum_probs=212.3

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCC
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      ..+.+++|++++.||+|+||    .||+|++..     +++.||+|++.+..     ..+.+.+|+.+|+.+      .|
T Consensus        10 ~~v~~~~y~i~~~LG~G~fG----~V~~~~~~~-----~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l------~h   74 (384)
T 4fr4_A           10 EDVNFDHFEILRAIGKGSFG----KVCIVQKND-----TKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGL------EH   74 (384)
T ss_dssp             CCCCGGGEEEEEEEECCTTC----CEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTC------CC
T ss_pred             CCCChHHeEEEEEEeeCCCe----EEEEEEECC-----CCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhC------CC
Confidence            34667999999999999999    999999998     89999999997532     235678999999999      49


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      |||+++++++.     +.+.+|+||| |+.+|+|.+++....         .+++                    ..++.
T Consensus        75 p~Iv~l~~~~~-----~~~~~~lv~e-~~~gg~L~~~l~~~~---------~l~~--------------------~~~~~  119 (384)
T 4fr4_A           75 PFLVNLWYSFQ-----DEEDMFMVVD-LLLGGDLRYHLQQNV---------HFKE--------------------ETVKL  119 (384)
T ss_dssp             TTBCCEEEEEE-----CSSEEEEEEC-CCTTEEHHHHHHTTC---------CCCH--------------------HHHHH
T ss_pred             CCCCcEEEEEE-----eCCEEEEEEe-cCCCCcHHHHHHhcC---------CCCH--------------------HHHHH
Confidence            99999999999     7889999999 999999999998754         4555                    45788


Q ss_pred             HHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccC--CCCCCchh
Q 005958          236 LMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMD--RRQMMIAF  305 (667)
Q Consensus       236 i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~--~~~ys~ks  305 (667)
                      |+.||+.||.|||++||+||||||+|||++. ++.+||+|||+|......        .+.|+|||++..  ...|+.++
T Consensus       120 ~~~qi~~aL~~LH~~givHrDlkp~NIll~~-~g~vkL~DFG~a~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~  198 (384)
T 4fr4_A          120 FICELVMALDYLQNQRIIHRDMKPDNILLDE-HGHVHITDFNIAAMLPRETQITTMAGTKPYMAPEMFSSRKGAGYSFAV  198 (384)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCSGGGEEECT-TSCEEECCCTTCEECCTTCCBCCCCSCGGGCCGGGTCCCSSCCBCTTH
T ss_pred             HHHHHHHHHHHHHHCCceeccCcHHHeEECC-CCCEEEeccceeeeccCCCceeccCCCccccCCeeeccCCCCCCCccc
Confidence            9999999999999999999999999999998 899999999999865433        367999997654  34689999


Q ss_pred             hHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCc
Q 005958          306 DMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       306 DIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      |||||||++|||++|++||...            ......+.........       ......+++++++||.+||+.||
T Consensus       199 DiwSlG~il~elltG~~Pf~~~------------~~~~~~~~~~~~~~~~-------~~~p~~~s~~~~~li~~lL~~dP  259 (384)
T 4fr4_A          199 DWWSLGVTAYELLRGRRPYHIR------------SSTSSKEIVHTFETTV-------VTYPSAWSQEMVSLLKKLLEPNP  259 (384)
T ss_dssp             HHHHHHHHHHHHHHSSCSSCCC------------TTSCHHHHHHHHHHCC-------CCCCTTSCHHHHHHHHHHSCSSG
T ss_pred             eeechHHHHHHHHhCCCCCCCC------------CCccHHHHHHHHhhcc-------cCCCCcCCHHHHHHHHHHhcCCH
Confidence            9999999999999999999521            1111222222222221       22345678999999999999999


Q ss_pred             CCCCC-HHHHHcCCCCCCCCCC
Q 005958          386 SKRIS-CLDALRHPFLCGPRWR  406 (667)
Q Consensus       386 ~kRpS-a~elL~HPwf~~~~~~  406 (667)
                      ++||+ ++++++||||++++|.
T Consensus       260 ~~R~s~~~~l~~hp~f~~~~w~  281 (384)
T 4fr4_A          260 DQRFSQLSDVQNFPYMNDINWD  281 (384)
T ss_dssp             GGSCCSHHHHHTSGGGTTCCHH
T ss_pred             hHhcccHHHHHcChhhhcCCHH
Confidence            99998 8999999999998873

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=2.1e-45  Score=388.31  Aligned_cols=275  Identities=21%  Similarity=0.293  Sum_probs=194.1

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      .++|++++.||+|+||    .||+|.+..     +++.||||++....   ..+.+.+|+.+++.++      ||||+++
T Consensus         4 ~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~------hp~iv~~   68 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYA----TVYKGLNKT-----TGVYVALKEVKLDSEEGTPSTAIREISLMKELK------HENIVRL   68 (317)
T ss_dssp             ---------------C----EEEEEECSS-----SCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCC------BTTBCCE
T ss_pred             ccceeEeeEECCCCCE----EEEEEEECC-----CCcEEEEEEeecccccccHHHHHHHHHHHHhcC------CCCcceE
Confidence            4789999999999999    999999987     79999999997532   2356789999999994      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     ..+.+|+||| |+++ +|.+++........   ...++                    ...++.++.||+
T Consensus        69 ~~~~~-----~~~~~~lv~e-~~~~-~L~~~l~~~~~~~~---~~~~~--------------------~~~~~~~~~qi~  118 (317)
T 2pmi_A           69 YDVIH-----TENKLTLVFE-FMDN-DLKKYMDSRTVGNT---PRGLE--------------------LNLVKYFQWQLL  118 (317)
T ss_dssp             EEEEC-----CTTEEEEEEE-CCCC-BHHHHHHHHHSSSC---CCCCC--------------------HHHHHHHHHHHH
T ss_pred             EEEEE-----ECCeEEEEEE-ecCC-CHHHHHHhcccccc---ccCCC--------------------HHHHHHHHHHHH
Confidence            99998     7789999999 9996 99999976421000   01233                    456888999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      .||.|||++||+||||||+|||++. ++.+||+|||++......         .+.|+|||++.+...|+.++|||||||
T Consensus       119 ~aL~~lH~~~ivH~Dlkp~NIl~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~  197 (317)
T 2pmi_A          119 QGLAFCHENKILHRDLKPQNLLINK-RGQLKLGDFGLARAFGIPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGC  197 (317)
T ss_dssp             HHHHHHHHTTEECCCCCGGGEEECT-TCCEEECCCSSCEETTSCCCCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHH
T ss_pred             HHHHHHHHCCeeeCCCChHHeEEcC-CCCEEECcCccceecCCCcccCCCCcccccccCchHhhCCCCCCcHHHHHHHHH
Confidence            9999999999999999999999998 899999999999865422         367999998777677999999999999


Q ss_pred             HHHHHHhCCCCChhhh---hhhhhhhccCCChhHHHHHHHHHhccCCCCC----CC------CcccccCCCHHHHHHHHH
Q 005958          313 MMAKMVLRELMDPLIF---TKFKSFLTKGIDPSCLREFLLQVLNRNSSSG----NT------GFQILDRNWGAGWNLLSL  379 (667)
Q Consensus       313 iLyemltG~~PF~~~~---~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~----~~------~~~~~~~~s~e~~dLI~~  379 (667)
                      ++|||++|++||....   ....++...|.++......... .....+..    ..      .......+++++++||.+
T Consensus       198 il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  276 (317)
T 2pmi_A          198 ILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNESLWPSVTK-LPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHG  276 (317)
T ss_dssp             HHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCTTTCGGGGG-CTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhHhhhhhh-hhhcccccccccchhHHHhhcccccccCCHHHHHHHHH
Confidence            9999999999996321   1111111222221110000000 00000000    00      001123578899999999


Q ss_pred             hhhcCcCCCCCHHHHHcCCCCCCCCCC
Q 005958          380 LLATKPSKRISCLDALRHPFLCGPRWR  406 (667)
Q Consensus       380 ~L~~DP~kRpSa~elL~HPwf~~~~~~  406 (667)
                      ||+.||++|||++|+|+||||++..+.
T Consensus       277 ~L~~dP~~Rpt~~e~l~hp~f~~~~~~  303 (317)
T 2pmi_A          277 LLQLNPDMRLSAKQALHHPWFAEYYHH  303 (317)
T ss_dssp             HSCSSGGGSCCHHHHTTSGGGGGGCC-
T ss_pred             HCCCCcccCCCHHHHhCChhhhcccch
Confidence            999999999999999999999987643

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=4e-45  Score=401.38  Aligned_cols=259  Identities=15%  Similarity=0.206  Sum_probs=212.4

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-----HHHHHHHHHHHHHHhhccCCCCC
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-----QRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-----~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      +...++|++++.||+|+||    +||+|+++.     +++.||+|++.+...     ...+.+|+.+++.+      +||
T Consensus        65 ~~~~~~y~~~~~LG~G~fG----~V~~~~~~~-----~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l------~hp  129 (410)
T 3v8s_A           65 RMKAEDYEVVKVIGRGAFG----EVQLVRHKS-----TRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFA------NSP  129 (410)
T ss_dssp             SCCGGGEEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHC------CCT
T ss_pred             ccCccccEEEEEEEcCCCE----EEEEEEECC-----CCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhC------CCC
Confidence            4556899999999999999    999999998     899999999976332     22367899999999      499


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++.     +.+.+||||| |+++|+|.+++...          .++|                    ..++.|
T Consensus       130 ~Iv~l~~~~~-----~~~~~~lV~E-~~~gg~L~~~l~~~----------~~~e--------------------~~~~~~  173 (410)
T 3v8s_A          130 WVVQLFYAFQ-----DDRYLYMVME-YMPGGDLVNLMSNY----------DVPE--------------------KWARFY  173 (410)
T ss_dssp             TBCCEEEEEE-----CSSEEEEEEC-CCTTEEHHHHHHHC----------CCCH--------------------HHHHHH
T ss_pred             CCCeEEEEEE-----ECCEEEEEEe-CCCCCcHHHHHHcC----------CCCH--------------------HHHHHH
Confidence            9999999999     8889999999 99999999999763          3555                    456789


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC----------CCCCCCCcccccCCC---CCCc
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE----------DGPNNSSPDSNMDRR---QMMI  303 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~----------~~~~Y~APE~l~~~~---~ys~  303 (667)
                      +.||+.||.|||++||+||||||+|||++. ++++||+|||+|+....          +.+.|+|||++.+..   .|+.
T Consensus       174 ~~qi~~aL~~LH~~givHrDLKp~NILl~~-~g~ikL~DFG~a~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~  252 (410)
T 3v8s_A          174 TAEVVLALDAIHSMGFIHRDVKPDNMLLDK-SGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGR  252 (410)
T ss_dssp             HHHHHHHHHHHHHTTEECCCCSGGGEEECT-TSCEEECCCTTCEECCTTSEEECCSCCSCGGGCCHHHHHTTTTTCEEET
T ss_pred             HHHHHHHHHHHHHCCeEeccCCHHHeeECC-CCCEEEeccceeEeeccCCcccccCCcCCccccCHHHhhccCCCcCCCC
Confidence            999999999999999999999999999998 89999999999976543          347899999776543   2789


Q ss_pred             hhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhc
Q 005958          304 AFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLAT  383 (667)
Q Consensus       304 ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~  383 (667)
                      ++|||||||++|||++|++||.            +.........+......      ..++....+++++++||.+||+.
T Consensus       253 ~~DiwSlGvilyell~G~~Pf~------------~~~~~~~~~~i~~~~~~------~~~p~~~~~s~~~~~li~~lL~~  314 (410)
T 3v8s_A          253 ECDWWSVGVFLYEMLVGDTPFY------------ADSLVGTYSKIMNHKNS------LTFPDDNDISKEAKNLICAFLTD  314 (410)
T ss_dssp             HHHHHHHHHHHHHHHHSSCTTC------------CSSHHHHHHHHHTHHHH------CCCCTTCCCCHHHHHHHHHHSSC
T ss_pred             cceEecchHHHHHHHhCCCCCC------------CCChhhHHHHHHhcccc------ccCCCcccccHHHHHHHHHHccC
Confidence            9999999999999999999995            22333222222211100      01223346889999999999999


Q ss_pred             CcCC--CCCHHHHHcCCCCCCCCCCCCCc
Q 005958          384 KPSK--RISCLDALRHPFLCGPRWRVDPS  410 (667)
Q Consensus       384 DP~k--RpSa~elL~HPwf~~~~~~~~~~  410 (667)
                      +|.+  |++++|+++||||++.+|.....
T Consensus       315 ~~~rlgR~~~~ei~~Hp~f~~~~w~~~~~  343 (410)
T 3v8s_A          315 REVRLGRNGVEEIKRHLFFKNDQWAWETL  343 (410)
T ss_dssp             GGGCTTSSCHHHHHTSGGGCCSSCCSTTG
T ss_pred             hhhhCCCCCHHHHhcCccccCCCHHHHhh
Confidence            9998  99999999999999998865443

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=4.4e-45  Score=392.60  Aligned_cols=249  Identities=17%  Similarity=0.215  Sum_probs=210.4

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      ..+++|++++.||+|+||    .||+|+++.     +++.||||++.+..     ..+.+.+|+.+|+.+      +|||
T Consensus        38 ~~~~~y~~~~~lG~G~~g----~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l------~hp~  102 (350)
T 1rdq_E           38 AQLDQFDRIKTLGTGSFG----RVMLVKHKE-----SGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAV------NFPF  102 (350)
T ss_dssp             CCGGGEEEEEEEEECSSC----EEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTC------CCTT
T ss_pred             CCHHHCEEEEEeecCcCc----EEEEEEECC-----CCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhC------CCCC
Confidence            456899999999999999    999999997     89999999997642     234568899999988      5999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     +.+.+|+||| |+++|+|.+++.+.+         .+++                    ..++.++
T Consensus       103 iv~~~~~~~-----~~~~~~lv~e-~~~gg~L~~~l~~~~---------~~~~--------------------~~~~~~~  147 (350)
T 1rdq_E          103 LVKLEFSFK-----DNSNLYMVME-YVAGGEMFSHLRRIG---------RFSE--------------------PHARFYA  147 (350)
T ss_dssp             BCCEEEEEE-----CSSEEEEEEE-CCTTCBHHHHHHHHC---------CCCH--------------------HHHHHHH
T ss_pred             CCeEEEEEE-----cCCEEEEEEc-CCCCCcHHHHHHHcC---------CCCH--------------------HHHHHHH
Confidence            999999999     7889999999 999999999998754         4555                    4577899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC------CCCCCCcccccCCCCCCchhhHHHHH
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED------GPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      .||+.||.|||++||+||||||+|||++. ++.+||+|||+|+.....      .+.|+|||++. ...|+.++||||||
T Consensus       148 ~qi~~aL~~LH~~~ivHrDlkp~NIll~~-~g~~kL~DFg~a~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwslG  225 (350)
T 1rdq_E          148 AQIVLTFEYLHSLDLIYRDLKPENLLIDQ-QGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIIL-SKGYNKAVDWWALG  225 (350)
T ss_dssp             HHHHHHHHHHHHTTEECCCCSGGGEEECT-TSCEEECCCTTCEECSSCBCCCEECGGGCCHHHHT-TCCBCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCcccccCccceEEECC-CCCEEEcccccceeccCCcccccCCccccCHHHhc-CCCCCCcCCEeccc
Confidence            99999999999999999999999999998 899999999999876543      37899999655 45689999999999


Q ss_pred             HHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC-
Q 005958          312 FMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS-  390 (667)
Q Consensus       312 viLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS-  390 (667)
                      |++|||++|.+||.            +.....+.+.   +....       ...+..+++++++||.+||+.||++||+ 
T Consensus       226 ~il~ell~g~~Pf~------------~~~~~~~~~~---i~~~~-------~~~p~~~~~~~~~li~~lL~~dp~~R~~~  283 (350)
T 1rdq_E          226 VLIYEMAAGYPPFF------------ADQPIQIYEK---IVSGK-------VRFPSHFSSDLKDLLRNLLQVDLTKRFGN  283 (350)
T ss_dssp             HHHHHHHHSSCSSC------------CSSHHHHHHH---HHHCC-------CCCCTTCCHHHHHHHHHHSCSCTTTCTTS
T ss_pred             HhHhHHhhCCCCCC------------CCCHHHHHHH---HHcCC-------CCCCCCCCHHHHHHHHHHhhcCHHhccCC
Confidence            99999999999984            2233222222   22221       1233567899999999999999999998 


Q ss_pred             ----HHHHHcCCCCCCCCC
Q 005958          391 ----CLDALRHPFLCGPRW  405 (667)
Q Consensus       391 ----a~elL~HPwf~~~~~  405 (667)
                          ++|+++||||.+.+|
T Consensus       284 ~~~~~~ei~~h~~f~~~~w  302 (350)
T 1rdq_E          284 LKNGVNDIKNHKWFATTDW  302 (350)
T ss_dssp             STTTTHHHHTSGGGTTCCH
T ss_pred             ccCCHHHHHhCcCcCCCCH
Confidence                999999999999886

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=3.5e-45  Score=383.32  Aligned_cols=248  Identities=19%  Similarity=0.229  Sum_probs=204.9

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      .++|++.+.||+|+||    +||+|.+..     +++.||||++....  ..+.+.+|+.+++.++      ||||++++
T Consensus        19 ~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~------hp~iv~~~   83 (297)
T 3fxz_A           19 KKKYTRFEKIGQGASG----TVYTAMDVA-----TGQEVAIRQMNLQQQPKKELIINEILVMRENK------NPNIVNYL   83 (297)
T ss_dssp             GGTBCCCEEEEEETTE----EEEEEEBTT-----TCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCC------CTTBCCEE
T ss_pred             hhceeeeeeeccCCCe----EEEEEEECC-----CCcEEEEEEeecccccHHHHHHHHHHHHhcCC------CCCCCeEe
Confidence            4789999999999999    999999987     89999999987532  3456789999999994      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     ..+.+|+||| |+++|+|.+++...          .+++                    ..++.++.||+.
T Consensus        84 ~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~----------~~~~--------------------~~~~~~~~qi~~  127 (297)
T 3fxz_A           84 DSYL-----VGDELWVVME-YLAGGSLTDVVTET----------CMDE--------------------GQIAAVCRECLQ  127 (297)
T ss_dssp             EEEE-----ETTEEEEEEE-CCTTCBHHHHHHHS----------CCCH--------------------HHHHHHHHHHHH
T ss_pred             EEEE-----ECCEEEEEEE-CCCCCCHHHHHhhc----------CCCH--------------------HHHHHHHHHHHH
Confidence            9998     6788999999 99999999999864          3454                    457889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      ||.|||++||+||||||+|||++. ++.+||+|||+|......         .+.|+|||++. ...|+.++|||||||+
T Consensus       128 ~l~~lH~~~i~H~Dlkp~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwslG~i  205 (297)
T 3fxz_A          128 ALEFLHSNQVIHRDIKSDNILLGM-DGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVT-RKAYGPKVDIWSLGIM  205 (297)
T ss_dssp             HHHHHHHTTEECCCCSGGGEEECT-TCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHH-CSCBCTHHHHHHHHHH
T ss_pred             HHHHHHhCCceeCCCCHHHEEECC-CCCEEEeeCCCceecCCcccccCCccCCcCccChhhhc-CCCCCcHHHHHHHHHH
Confidence            999999999999999999999998 899999999998765432         36799999654 4568999999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      +|||++|++||...            ........+..   ...    ........+++++++||.+||+.||++|||++|
T Consensus       206 l~ell~g~~pf~~~------------~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e  266 (297)
T 3fxz_A          206 AIEMIEGEPPYLNE------------NPLRALYLIAT---NGT----PELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKE  266 (297)
T ss_dssp             HHHHHHSSCTTTTS------------CHHHHHHHHHH---HCS----CCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred             HHHHHhCCCCCCCC------------CHHHHHHHHHh---CCC----CCCCCccccCHHHHHHHHHHccCChhHCcCHHH
Confidence            99999999999522            22111111111   111    112334567899999999999999999999999


Q ss_pred             HHcCCCCCCCC
Q 005958          394 ALRHPFLCGPR  404 (667)
Q Consensus       394 lL~HPwf~~~~  404 (667)
                      +|+||||+...
T Consensus       267 ll~h~~~~~~~  277 (297)
T 3fxz_A          267 LLQHQFLKIAK  277 (297)
T ss_dssp             HTTCGGGGGCC
T ss_pred             HhhChhhcccC
Confidence            99999998754

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=5.9e-45  Score=403.13  Aligned_cols=259  Identities=18%  Similarity=0.224  Sum_probs=211.8

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhH-----HHHHHHHHHHHHHhhccCCCCC
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQ-----RRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~-----~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      ++..++|+++++||+|+||    +||+|+++.     +++.||+|++.+....     ..+.+|+.++..+      .||
T Consensus        70 ~~~~~~y~~~~~LG~G~fG----~V~~~~~~~-----~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~------~hp  134 (437)
T 4aw2_A           70 RLHREDFEILKVIGRGAFG----EVAVVKLKN-----ADKVFAMKILNKWEMLKRAETACFREERDVLVNG------DSK  134 (437)
T ss_dssp             SCCGGGEEEEEEEEECSSE----EEEEEEETT-----TTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHS------CTT
T ss_pred             cCChhheEEEEEEEeCCCE----EEEEEEEcC-----CCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhC------CCC
Confidence            4556899999999999999    999999998     7999999999763322     2368899999998      499


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++.     +.+.+||||| |+++|+|.+++.+..        ..++|                    ..++.|
T Consensus       135 ~Iv~l~~~~~-----~~~~~~lV~E-y~~gg~L~~~l~~~~--------~~l~e--------------------~~~~~~  180 (437)
T 4aw2_A          135 WITTLHYAFQ-----DDNNLYLVMD-YYVGGDLLTLLSKFE--------DRLPE--------------------EMARFY  180 (437)
T ss_dssp             TBCCEEEEEE-----CSSEEEEEEC-CCTTCBHHHHHHTTT--------TCCCH--------------------HHHHHH
T ss_pred             CEEEEEEEEe-----eCCEEEEEEe-cCCCCcHHHHHHHcc--------CCCCH--------------------HHHHHH
Confidence            9999999999     8889999999 999999999998632        14555                    457889


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC----------CCCCCCCccccc----CCCCCC
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE----------DGPNNSSPDSNM----DRRQMM  302 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~----------~~~~Y~APE~l~----~~~~ys  302 (667)
                      +.||+.||.|||++||+||||||+|||++. ++.+||+|||+|+....          +.+.|+|||++.    +...|+
T Consensus       181 ~~qi~~aL~~LH~~giiHrDLKp~NILl~~-~g~vkL~DFGla~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  259 (437)
T 4aw2_A          181 LAEMVIAIDSVHQLHYVHRDIKPDNILMDM-NGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYG  259 (437)
T ss_dssp             HHHHHHHHHHHHHTTEECCCCSGGGEEECT-TSCEEECCCTTCEECCTTSCEECCSCCSCGGGCCHHHHHHHHTSCCEEC
T ss_pred             HHHHHHHHHHHHhCCeEecccCHHHeeEcC-CCCEEEcchhhhhhcccCCCcccccccCCcCeeChHHHhhcccCCCCCC
Confidence            999999999999999999999999999998 89999999999975532          347899999765    255689


Q ss_pred             chhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHH-HhccCCCCCCCCcccccCCCHHHHHHHHHhh
Q 005958          303 IAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQ-VLNRNSSSGNTGFQILDRNWGAGWNLLSLLL  381 (667)
Q Consensus       303 ~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L  381 (667)
                      .++|||||||++|||++|++||.            +.........+.. ......+      .....+++++++||.+||
T Consensus       260 ~~~DvwSlGvil~elltG~~Pf~------------~~~~~~~~~~i~~~~~~~~~p------~~~~~~s~~~~dLi~~lL  321 (437)
T 4aw2_A          260 PECDWWSLGVCMYEMLYGETPFY------------AESLVETYGKIMNHKERFQFP------TQVTDVSENAKDLIRRLI  321 (437)
T ss_dssp             THHHHHHHHHHHHHHHHSSCTTC------------CSSHHHHHHHHHTHHHHCCCC------SSCCCSCHHHHHHHHTTS
T ss_pred             CcCeeHHHHHHHHHHHhCCCCCC------------CCChhHHHHhhhhccccccCC------cccccCCHHHHHHHHHHh
Confidence            99999999999999999999995            2232222222211 1111111      122457899999999999


Q ss_pred             hcCcCC--CCCHHHHHcCCCCCCCCCCCC
Q 005958          382 ATKPSK--RISCLDALRHPFLCGPRWRVD  408 (667)
Q Consensus       382 ~~DP~k--RpSa~elL~HPwf~~~~~~~~  408 (667)
                      +.+|++  |++++|+++||||++++|...
T Consensus       322 ~~~~~r~~r~~~~eil~Hpff~~i~w~~l  350 (437)
T 4aw2_A          322 CSREHRLGQNGIEDFKKHPFFSGIDWDNI  350 (437)
T ss_dssp             SCGGGCTTTTTTHHHHTSGGGTTCCTTTG
T ss_pred             cccccccCCCCHHHHhCCCccCCCCHHHH
Confidence            999998  999999999999999998654

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.3e-45  Score=388.45  Aligned_cols=252  Identities=16%  Similarity=0.239  Sum_probs=207.1

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      .++|++.+.||+|+||    +||+|.+..     +++.||+|++.... ....+.+|+.+++.++      ||||+++++
T Consensus         4 ~~~y~~~~~lG~G~~g----~Vy~~~~~~-----~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~------hpnIv~~~~   68 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFG----IVHRCVETS-----SKKTYMAKFVKVKGTDQVLVKKEISILNIAR------HRNILHLHE   68 (321)
T ss_dssp             TTTEEEEEEEEECSSE----EEEEEEETT-----TTEEEEEEEECCCTHHHHHHHHHHHHHHHSC------CTTBCCEEE
T ss_pred             hhceEeeeEEecCCCe----EEEEEEECC-----CCcEEEEEEEecCcccHHHHHHHHHHHHhCC------CCCCCeEeE
Confidence            4789999999999999    999999998     89999999997543 3455789999999994      999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++.     +.+.+|+||| |+++|+|.+++....        ..+++                    ..++.++.||+.|
T Consensus        69 ~~~-----~~~~~~lv~e-~~~g~~L~~~l~~~~--------~~~~~--------------------~~~~~i~~qi~~a  114 (321)
T 1tki_A           69 SFE-----SMEELVMIFE-FISGLDIFERINTSA--------FELNE--------------------REIVSYVHQVCEA  114 (321)
T ss_dssp             EEE-----ETTEEEEEEC-CCCCCBHHHHHTSSS--------CCCCH--------------------HHHHHHHHHHHHH
T ss_pred             EEe-----cCCEEEEEEE-eCCCCCHHHHHHhcC--------CCCCH--------------------HHHHHHHHHHHHH
Confidence            998     7789999999 999999999997642        24555                    4578899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCC-CCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPV-DRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~-~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      |.|||++||+||||||+|||++.. ++.+||+|||++......        .+.|+|||++. ...++.++|||||||++
T Consensus       115 l~~lH~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwslG~il  193 (321)
T 1tki_A          115 LQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQ-HDVVSTATDMWSLGTLV  193 (321)
T ss_dssp             HHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEEEEEESCGGGSCHHHHT-TCEECHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCCccccccCChhhcCcHHhc-CCCCCchhhHHHHHHHH
Confidence            999999999999999999999863 589999999999876543        36899999654 45589999999999999


Q ss_pred             HHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHH
Q 005958          315 AKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDA  394 (667)
Q Consensus       315 yemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~el  394 (667)
                      |+|++|.+||..            .........   +......   .....++.+++++++||.+||..||++|||+.|+
T Consensus       194 ~~ll~g~~pf~~------------~~~~~~~~~---i~~~~~~---~~~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~  255 (321)
T 1tki_A          194 YVLLSGINPFLA------------ETNQQIIEN---IMNAEYT---FDEEAFKEISIEAMDFVDRLLVKERKSRMTASEA  255 (321)
T ss_dssp             HHHHHSSCTTCC------------SSHHHHHHH---HHHTCCC---CCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHH
T ss_pred             HHHHhCCCCCcC------------CCHHHHHHH---HHcCCCC---CChhhhccCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence            999999999852            222222222   2221111   0112345678999999999999999999999999


Q ss_pred             HcCCCCCCCC
Q 005958          395 LRHPFLCGPR  404 (667)
Q Consensus       395 L~HPwf~~~~  404 (667)
                      |+||||++..
T Consensus       256 l~hp~~~~~~  265 (321)
T 1tki_A          256 LQHPWLKQKI  265 (321)
T ss_dssp             HHSHHHHSCG
T ss_pred             hcChhhccCc
Confidence            9999998753

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=2.9e-44  Score=376.86  Aligned_cols=267  Identities=21%  Similarity=0.286  Sum_probs=202.0

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-------hHHHHHHHHHHHHHHhhccCCCC
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-------AQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-------~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      +..++|++.+.||+|+||    +||+|++..     +++.||||++....       ......+|+.+++.++.   +.|
T Consensus         6 ~~~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~---~~h   73 (308)
T 3g33_A            6 MATSRYEPVAEIGVGAYG----TVYKARDPH-----SGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEA---FEH   73 (308)
T ss_dssp             ----CCEEEEEECCSSSC----CEEEEECTT-----TCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHH---HCC
T ss_pred             ccccceEEEEEEecCCCe----EEEEEEECC-----CCcEEEEEEEecccccccccccchhHHHHHHHHHHHhh---cCC
Confidence            446899999999999999    999999987     89999999987422       12456789888888752   259


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      |||+++++++..........+++||| |+++ +|.+++.....       ..+++                    ..++.
T Consensus        74 ~niv~~~~~~~~~~~~~~~~~~lv~e-~~~~-~L~~~~~~~~~-------~~~~~--------------------~~~~~  124 (308)
T 3g33_A           74 PNVVRLMDVCATSRTDREIKVTLVFE-HVDQ-DLRTYLDKAPP-------PGLPA--------------------ETIKD  124 (308)
T ss_dssp             TTBCCEEEEEEECCSSSEEEEEEEEE-CCCC-BHHHHHHTCCT-------TCSCH--------------------HHHHH
T ss_pred             CCeEEeeeeeeccCCCCceeEEEEeh-hhhc-CHHHHHhhccC-------CCCCH--------------------HHHHH
Confidence            99999999998543223347899999 9986 99999987531       12454                    56788


Q ss_pred             HHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhH
Q 005958          236 LMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       236 i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDI  307 (667)
                      ++.||+.||+|||++||+||||||+|||++. ++.+||+|||+|......        .+.|+|||++.+ ..|+.++||
T Consensus       125 i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~-~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Di  202 (308)
T 3g33_A          125 LMRQFLRGLDFLHANCIVHRDLKPENILVTS-GGTVKLADFGLARIYSYQMALTPVVVTLWYRAPEVLLQ-STYATPVDM  202 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCTTTEEECT-TSCEEECSCSCTTTSTTCCCSGGGGCCCSSCCHHHHHT-SCCCSTHHH
T ss_pred             HHHHHHHHHHHHHHCCcccCCCCHHHEEEcC-CCCEEEeeCccccccCCCcccCCccccccccCchHHcC-CCCCchHHH
Confidence            9999999999999999999999999999998 899999999999765432        368999996554 458999999


Q ss_pred             HHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCC-----------------CCCcccccCCC
Q 005958          308 RCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSG-----------------NTGFQILDRNW  370 (667)
Q Consensus       308 WSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~-----------------~~~~~~~~~~s  370 (667)
                      |||||++|+|++|++||..            .........+...........                 .......+.++
T Consensus       203 wslG~il~~l~~g~~pf~~------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (308)
T 3g33_A          203 WSVGCIFAEMFRRKPLFCG------------NSEADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEME  270 (308)
T ss_dssp             HHHHHHHHHTTTSSCSCCC------------SSHHHHHHHHHHHHCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCC
T ss_pred             HHHHHHHHHHHhCCCCCCC------------CCHHHHHHHHHHHhCCCChhhccchhhccccccCCCCCCcHHHhCcccc
Confidence            9999999999999999952            122111111211111111100                 00012345688


Q ss_pred             HHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          371 GAGWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       371 ~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      +++.+||.+||++||++|||+.|+|+||||+...
T Consensus       271 ~~~~~li~~~L~~dP~~R~t~~e~l~h~~~~~~~  304 (308)
T 3g33_A          271 ESGAQLLLEMLTFNPHKRISAFRALQHSYLHKDE  304 (308)
T ss_dssp             HHHHHHHHHHTCSSTTTSCCHHHHHTSTTC----
T ss_pred             HHHHHHHHHHhcCCCccCCCHHHHhcCccccCCC
Confidence            9999999999999999999999999999998754

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=3e-45  Score=388.28  Aligned_cols=273  Identities=22%  Similarity=0.287  Sum_probs=207.4

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHH---HHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQR---RGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~---~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      +++|++++.||+|+||    +||+|.+..     +++.||||++.......   .+.+|+.+++.++      ||||+++
T Consensus         1 l~~y~~~~~lG~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~------h~~iv~~   65 (324)
T 3mtl_A            1 METYIKLDKLGEGTYA----TVYKGKSKL-----TDNLVALKEIRLEHEEGAPCTAIREVSLLKDLK------HANIVTL   65 (324)
T ss_dssp             CCSEEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEECC------CCCCCCCHHHHSCCC------CTTBCCE
T ss_pred             CCceEEEEEEcCCCCE----EEEEEEECC-----CCcEEEEEEEecccccccchhHHHHHHHHHhcC------CCCCCee
Confidence            4789999999999999    999999997     79999999997543222   2357999999984      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     ..+.+++||| |+++ +|.+++...+.        .+++                    ..++.++.||+
T Consensus        66 ~~~~~-----~~~~~~lv~e-~~~~-~l~~~~~~~~~--------~~~~--------------------~~~~~~~~qi~  110 (324)
T 3mtl_A           66 HDIIH-----TEKSLTLVFE-YLDK-DLKQYLDDCGN--------IINM--------------------HNVKLFLFQLL  110 (324)
T ss_dssp             EEEEE-----CSSCEEEEEE-CCSE-EHHHHHHHTTT--------CCCH--------------------HHHHHHHHHHH
T ss_pred             eeEEe-----eCCEEEEEec-cccc-CHHHHHHhcCC--------CCCH--------------------HHHHHHHHHHH
Confidence            99998     7789999999 9986 99999987531        3444                    45788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      .||.|||++||+||||||+|||++. ++.+||+|||++......         .+.|+|||++.+...|+.++|||||||
T Consensus       111 ~aL~~LH~~~ivH~Dikp~NIl~~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~  189 (324)
T 3mtl_A          111 RGLAYCHRQKVLHRDLKPQNLLINE-RGELKLADFGLARAKSIPTKTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGC  189 (324)
T ss_dssp             HHHHHHHHTTEEESSCCGGGEEECT-TCCEEECSSSEEECC------------CGGGCCHHHHTTCCCCCTHHHHHHHHH
T ss_pred             HHHHHHHHCCccCCCcCHHHEEECC-CCCEEEccCcccccccCCccccccccCcccccChhhhcCCCCCCcHHHHHHHHH
Confidence            9999999999999999999999998 899999999999755422         367999998777778999999999999


Q ss_pred             HHHHHHhCCCCChhh---hhhhhhhhccCCChhH-HHHHH----HHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          313 MMAKMVLRELMDPLI---FTKFKSFLTKGIDPSC-LREFL----LQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       313 iLyemltG~~PF~~~---~~~~~~~~~~g~~~~~-l~~~~----~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      ++|+|++|++||.+.   .....+....|.+... +....    ..................+.+++++++||.+||++|
T Consensus       190 il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d  269 (324)
T 3mtl_A          190 IFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFE  269 (324)
T ss_dssp             HHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCHHHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSS
T ss_pred             HHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHhchhhhcchhhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcC
Confidence            999999999999632   1111222222221110 00000    000000000111112334567899999999999999


Q ss_pred             cCCCCCHHHHHcCCCCCCCCCCCC
Q 005958          385 PSKRISCLDALRHPFLCGPRWRVD  408 (667)
Q Consensus       385 P~kRpSa~elL~HPwf~~~~~~~~  408 (667)
                      |++|||++|+|+||||.+...+..
T Consensus       270 P~~R~t~~e~l~hp~f~~~~~~~~  293 (324)
T 3mtl_A          270 GRNRISAEDAMKHPFFLSLGERIH  293 (324)
T ss_dssp             GGGSCCHHHHTTSGGGGGGCSTTS
T ss_pred             cccCCCHHHHhcChhhhhcccccc
Confidence            999999999999999998765433

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=9.8e-45  Score=391.11  Aligned_cols=254  Identities=17%  Similarity=0.201  Sum_probs=203.7

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ...++|++.+.||+|+||    +||+|++..     +++.||||++.... ..+.+.+|+.+++.++      ||||+++
T Consensus        17 ~~~~~y~~~~~lG~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~------hpniv~~   81 (361)
T 3uc3_A           17 HDSDRYDFVKDIGSGNFG----VARLMRDKL-----TKELVAVKYIERGAAIDENVQREIINHRSLR------HPNIVRF   81 (361)
T ss_dssp             CCTTTEEEEEEESSSTTS----SEEEEEETT-----TCCEEEEEEEESSTTSCHHHHHHHHHHHHCC------CTTBCCE
T ss_pred             CCCCcEEEEEEeccCCCE----EEEEEEECC-----CCcEEEEEEEecCccccHHHHHHHHHHHhCC------CCCCCcE
Confidence            456899999999999999    999999998     89999999997632 3466789999999995      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     ..+.+|+||| |+++|+|.+++...+         .+++                    ..++.++.||+
T Consensus        82 ~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~~i~~ql~  126 (361)
T 3uc3_A           82 KEVIL-----TPTHLAIIME-YASGGELYERICNAG---------RFSE--------------------DEARFFFQQLL  126 (361)
T ss_dssp             EEEEE-----CSSEEEEEEE-CCCSCBHHHHHHHHS---------SCCH--------------------HHHHHHHHHHH
T ss_pred             EEEEe-----eCCEEEEEEE-eCCCCCHHHHHHhcC---------CCCH--------------------HHHHHHHHHHH
Confidence            99999     7889999999 999999999998754         4555                    45788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCC--eEEEeeecccccccC--------CCCCCCCcccccCCCCCCchhhHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDR--HIKVGILGNAADFYE--------DGPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~--~vKL~DFGlA~~~~~--------~~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      .||.|||++||+||||||+|||++. ++  .+||+|||+|+....        +.+.|+|||++.+...++.++||||||
T Consensus       127 ~~L~~LH~~~ivH~Dlkp~Nill~~-~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG  205 (361)
T 3uc3_A          127 SGVSYCHSMQICHRDLKLENTLLDG-SPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCG  205 (361)
T ss_dssp             HHHHHHHHTTCCSCCCCGGGEEECS-SSSCCEEECCCCCC---------------CTTSCHHHHHCSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHCCcccCCCCHHHEEEcC-CCCceEEEeecCccccccccCCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhH
Confidence            9999999999999999999999986 44  499999999974322        237899999776665445569999999


Q ss_pred             HHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH
Q 005958          312 FMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC  391 (667)
Q Consensus       312 viLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa  391 (667)
                      |++|+|++|++||....           ........+..+.....     .++....+++++++||.+||+.||++|||+
T Consensus       206 ~il~ell~g~~Pf~~~~-----------~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  269 (361)
T 3uc3_A          206 VTLYVMLVGAYPFEDPE-----------EPRDYRKTIQRILSVKY-----SIPDDIRISPECCHLISRIFVADPATRISI  269 (361)
T ss_dssp             HHHHHHHHSSCSCC---------------CCCHHHHHHHHHTTCC-----CCCTTSCCCHHHHHHHHHHSCSCTTTSCCH
T ss_pred             HHHHHHHhCCCCCCCCc-----------cHHHHHHHHHHHhcCCC-----CCCCcCCCCHHHHHHHHHHccCChhHCcCH
Confidence            99999999999996321           11222333333332221     122334678999999999999999999999


Q ss_pred             HHHHcCCCCCCC
Q 005958          392 LDALRHPFLCGP  403 (667)
Q Consensus       392 ~elL~HPwf~~~  403 (667)
                      .|+|+||||...
T Consensus       270 ~ell~hp~f~~~  281 (361)
T 3uc3_A          270 PEIKTHSWFLKN  281 (361)
T ss_dssp             HHHHTSHHHHTT
T ss_pred             HHHHhCcchhcC
Confidence            999999999653

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.1e-44  Score=384.72  Aligned_cols=250  Identities=18%  Similarity=0.230  Sum_probs=205.8

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--------hHHHHHHHHHHHHHHhhccCCCCC
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--------AQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--------~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      .++|++.+.||+|+||    .||+|++..     +++.||+|++....        ..+.+.+|+.+|+.++      ||
T Consensus        10 ~~~y~~~~~lG~G~~g----~V~~~~~~~-----~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~------hp   74 (326)
T 2y0a_A           10 DDYYDTGEELGSGQFA----VVKKCREKS-----TGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ------HP   74 (326)
T ss_dssp             HHHEEEEEEEECCSSE----EEEEEEETT-----TCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCC------CT
T ss_pred             ccceEeceEEeeCCCe----EEEEEEECC-----CCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCC------CC
Confidence            3679999999999999    999999998     89999999997532        2456789999999995      99


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++.     ..+.+++||| |+++|+|.+++...+         .+++                    ..++.+
T Consensus        75 ~iv~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~~i  119 (326)
T 2y0a_A           75 NVITLHEVYE-----NKTDVILILE-LVAGGELFDFLAEKE---------SLTE--------------------EEATEF  119 (326)
T ss_dssp             TBCCEEEEEE-----CSSEEEEEEE-CCCSCBHHHHHTTSS---------CCBH--------------------HHHHHH
T ss_pred             CCCcEEEEEE-----eCCEEEEEEE-cCCCCCHHHHHHhcC---------CcCH--------------------HHHHHH
Confidence            9999999999     7889999999 999999999997643         4554                    457889


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCC----eEEEeeecccccccC--------CCCCCCCcccccCCCCCCch
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDR----HIKVGILGNAADFYE--------DGPNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~----~vKL~DFGlA~~~~~--------~~~~Y~APE~l~~~~~ys~k  304 (667)
                      +.||+.||.|||++||+||||||+|||++. ++    .+||+|||++.....        +.+.|+|||++ ....|+.+
T Consensus       120 ~~qi~~al~~lH~~~ivH~Dlkp~NIll~~-~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~  197 (326)
T 2y0a_A          120 LKQILNGVYYLHSLQIAHFDLKPENIMLLD-RNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIV-NYEPLGLE  197 (326)
T ss_dssp             HHHHHHHHHHHHHTTEECCCCCGGGEEESC-SSSSSCCEEECCCTTCEECCTTSCCCCCCSCTTTCCHHHH-TTCCCCTH
T ss_pred             HHHHHHHHHHHHHCCeEcCCCCHHHEEEec-CCCCCCCEEEEECCCCeECCCCCccccccCCcCcCCceee-cCCCCCcH
Confidence            999999999999999999999999999987 55    899999999987643        23789999954 55569999


Q ss_pred             hhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          305 FDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       305 sDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      +|||||||++|+|++|.+||.            +.........+..   ....   .........++++++||.+||+.|
T Consensus       198 ~DiwslG~il~~ll~g~~pf~------------~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~li~~~L~~d  259 (326)
T 2y0a_A          198 ADMWSIGVITYILLSGASPFL------------GDTKQETLANVSA---VNYE---FEDEYFSNTSALAKDFIRRLLVKD  259 (326)
T ss_dssp             HHHHHHHHHHHHHHHSCCSSC------------CSSHHHHHHHHHH---TCCC---CCHHHHTTSCHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHHHHHHHHCcCCCC------------CCCHHHHHHHHHh---cCCC---cCccccccCCHHHHHHHHHHccCC
Confidence            999999999999999999985            2222222222111   1111   011233567899999999999999


Q ss_pred             cCCCCCHHHHHcCCCCCCCC
Q 005958          385 PSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       385 P~kRpSa~elL~HPwf~~~~  404 (667)
                      |++|||+.|+|+||||++..
T Consensus       260 P~~Rpt~~e~l~hp~~~~~~  279 (326)
T 2y0a_A          260 PKKRMTIQDSLQHPWIKPKD  279 (326)
T ss_dssp             GGGSCCHHHHHHSTTTSCCS
T ss_pred             hhhCCCHHHHhcCCCccCCc
Confidence            99999999999999998765

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=6.5e-45  Score=394.81  Aligned_cols=253  Identities=20%  Similarity=0.246  Sum_probs=202.5

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-----HHHHHHHHHHH-HHHhhccCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-----QRRGRRAIEVL-KKLVRRRLM  153 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-----~~~~~rEi~iL-~~L~~~~~~  153 (667)
                      ......++|++++.||+|+||    .||+|+++.     +++.||||++.+...     ...+.+|..++ +.+      
T Consensus        32 ~~~~~~~~y~~~~~lG~G~fg----~V~~~~~~~-----~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~------   96 (373)
T 2r5t_A           32 NPHAKPSDFHFLKVIGKGSFG----KVLLARHKA-----EEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNV------   96 (373)
T ss_dssp             CTTCCGGGEEEEEEEECCTTC----EEEEEEETT-----TCCEEEEEEEEGGGBC-------------CCBCCC------
T ss_pred             CCCCChhheEEEEEEeeCCCe----EEEEEEEcC-----CCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhC------
Confidence            345677999999999999999    999999998     899999999976432     22345555542 333      


Q ss_pred             CCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHH
Q 005958          154 YHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLI  233 (667)
Q Consensus       154 ~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i  233 (667)
                      .||||+++++++.     +.+.+|+||| |+++|+|.+++.+.+         .++|.                    .+
T Consensus        97 ~hp~Iv~l~~~~~-----~~~~~~lv~E-~~~gg~L~~~l~~~~---------~~~~~--------------------~~  141 (373)
T 2r5t_A           97 KHPFLVGLHFSFQ-----TADKLYFVLD-YINGGELFYHLQRER---------CFLEP--------------------RA  141 (373)
T ss_dssp             CCTTBCCEEEEEE-----CSSEEEEEEE-CCCSCBHHHHHHHHS---------SCCHH--------------------HH
T ss_pred             CCCCCCCEEEEEE-----eCCEEEEEEe-CCCCCcHHHHHHhcC---------CCCHH--------------------HH
Confidence            6999999999999     7889999999 999999999998754         45653                    46


Q ss_pred             HHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCch
Q 005958          234 RLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       234 ~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~k  304 (667)
                      +.++.||+.||+|||++||+||||||+|||++. ++++||+|||+|+....         +.+.|+|||++. ...|+.+
T Consensus       142 ~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~-~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~  219 (373)
T 2r5t_A          142 RFYAAEIASALGYLHSLNIVYRDLKPENILLDS-QGHIVLTDFGLCKENIEHNSTTSTFCGTPEYLAPEVLH-KQPYDRT  219 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECT-TSCEEECCCCBCGGGBCCCCCCCSBSCCCCCCCHHHHT-TCCCCTH
T ss_pred             HHHHHHHHHHHHHHHHCCceecCCCHHHEEECC-CCCEEEeeCccccccccCCCccccccCCccccCHHHhC-CCCCCch
Confidence            789999999999999999999999999999998 89999999999986322         237899999654 5569999


Q ss_pred             hhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          305 FDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       305 sDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      +|||||||++|||++|.+||.            +.+...+.   ..++...       ....+.+++++++||.+||+.|
T Consensus       220 ~DiwslG~il~ell~G~~Pf~------------~~~~~~~~---~~i~~~~-------~~~~~~~~~~~~~li~~lL~~d  277 (373)
T 2r5t_A          220 VDWWCLGAVLYEMLYGLPPFY------------SRNTAEMY---DNILNKP-------LQLKPNITNSARHLLEGLLQKD  277 (373)
T ss_dssp             HHHHHHHHHHHHHHHSSCTTC------------CSBHHHHH---HHHHHSC-------CCCCSSSCHHHHHHHHHHTCSS
T ss_pred             hhhHHHHHHHHHHHcCCCCCC------------CCCHHHHH---HHHHhcc-------cCCCCCCCHHHHHHHHHHcccC
Confidence            999999999999999999985            22222222   2222221       2234568899999999999999


Q ss_pred             cCCCCCH----HHHHcCCCCCCCCCC
Q 005958          385 PSKRISC----LDALRHPFLCGPRWR  406 (667)
Q Consensus       385 P~kRpSa----~elL~HPwf~~~~~~  406 (667)
                      |++||++    .++++||||++++|.
T Consensus       278 p~~R~~~~~~~~~i~~h~~f~~~~w~  303 (373)
T 2r5t_A          278 RTKRLGAKDDFMEIKSHVFFSLINWD  303 (373)
T ss_dssp             GGGSTTTTTTHHHHHTSGGGTTCCHH
T ss_pred             HHhCCCCCCCHHHHhCCccccCCCHH
Confidence            9999987    699999999998873

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=2e-44  Score=399.84  Aligned_cols=249  Identities=16%  Similarity=0.197  Sum_probs=204.7

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      .++|++.+.||+|+||    +||+|.+..     +++.||+|++....    ..+.+.+|+.+++.++      ||||++
T Consensus        10 ~~~Y~i~~~LG~G~fg----~V~~~~~~~-----~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~------hpnIv~   74 (444)
T 3soa_A           10 TEEYQLFEELGKGAFS----VVRRCVKVL-----AGQEYAAMIINTKKLSARDHQKLEREARICRLLK------HPNIVR   74 (444)
T ss_dssp             HHHEEEEEEEEEC--C----EEEEEEETT-----TTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCC------BTTBCC
T ss_pred             cCCeEEEEEeccCCCe----EEEEEEECC-----CCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCC------CcCCCe
Confidence            4789999999999999    999999998     89999999997532    3355789999999994      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     +.+..|+||| |+.+|+|.+++...+         .++|.                    .++.++.||
T Consensus        75 l~~~~~-----~~~~~~lv~E-~~~gg~L~~~i~~~~---------~~~e~--------------------~~~~i~~qi  119 (444)
T 3soa_A           75 LHDSIS-----EEGHHYLIFD-LVTGGELFEDIVARE---------YYSEA--------------------DASHCIQQI  119 (444)
T ss_dssp             EEEEEE-----CSSEEEEEEC-CCBCCBHHHHHHHCS---------CCCHH--------------------HHHHHHHHH
T ss_pred             EEEEEE-----ECCEEEEEEE-eCCCCCHHHHHHHcC---------CCCHH--------------------HHHHHHHHH
Confidence            999999     8899999999 999999999998764         45654                    567899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcC--CCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISP--VDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRC  309 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~--~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWS  309 (667)
                      +.||.|||++||+||||||+|||++.  .++.+||+|||+|......         .+.|+|||++ ....|+.++||||
T Consensus       120 l~aL~~lH~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l-~~~~~~~~~DIwS  198 (444)
T 3soa_A          120 LEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVL-RKDPYGKPVDLWA  198 (444)
T ss_dssp             HHHHHHHHHTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTTCCBCCCSCSCGGGCCHHHH-TTCCBCTHHHHHH
T ss_pred             HHHHHHHHHCCccccCCCHHHEEEeccCCCCcEEEccCceeEEecCCCceeecccCCcccCCHHHh-cCCCCCCccccHH
Confidence            99999999999999999999999985  2578999999999765432         3679999955 4556999999999


Q ss_pred             HHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          310 VGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       310 LGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      |||++|+|++|.+||.            +.+...+...+.   ......   ..+.++.+++++++||.+||+.||++||
T Consensus       199 lGvilyell~G~~Pf~------------~~~~~~~~~~i~---~~~~~~---~~~~~~~~s~~~~~li~~~L~~dP~~Rp  260 (444)
T 3soa_A          199 CGVILYILLVGYPPFW------------DEDQHRLYQQIK---AGAYDF---PSPEWDTVTPEAKDLINKMLTINPSKRI  260 (444)
T ss_dssp             HHHHHHHHHHSSCSCC------------CSSHHHHHHHHH---HTCCCC---CTTTTTTSCHHHHHHHHHHSCSSTTTSC
T ss_pred             HHHHHHHHHhCCCCCC------------CccHHHHHHHHH---hCCCCC---CccccccCCHHHHHHHHHHcCCChhHCC
Confidence            9999999999999995            222222222222   211111   1223457889999999999999999999


Q ss_pred             CHHHHHcCCCCCC
Q 005958          390 SCLDALRHPFLCG  402 (667)
Q Consensus       390 Sa~elL~HPwf~~  402 (667)
                      |+.|+|+||||+.
T Consensus       261 ta~e~L~hp~~~~  273 (444)
T 3soa_A          261 TAAEALKHPWISH  273 (444)
T ss_dssp             CHHHHHHSCTTHH
T ss_pred             CHHHHhcCccccC
Confidence            9999999999975

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=7.3e-45  Score=394.76  Aligned_cols=276  Identities=16%  Similarity=0.115  Sum_probs=203.8

Q ss_pred             cccCCeEEEeEeccC--CCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCC
Q 005958           83 FNMGDFKILDRVSIG--LSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G--~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      ...++|++++.||+|  +||    .||+|++..     +++.||||++....    ..+.+.+|+.+++.++      ||
T Consensus        22 ~~~~~y~~~~~lG~G~~~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~------h~   86 (389)
T 3gni_B           22 PEGGCYELLTVIGKGFEDLM----TVNLARYKP-----TGEYVTVRRINLEACSNEMVTFLQGELHVSKLFN------HP   86 (389)
T ss_dssp             CCGGGEEEEEEEEEETTTTE----EEEEEEETT-----TCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCC------CT
T ss_pred             CCCCcEEEEecccCCcCCce----EEEEEEEcC-----CCCEEEEEEecccccChHHHHHHHHHHHHHHhCC------CC
Confidence            345889999999999  999    999999998     89999999997532    2345688999999994      99


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++.     ..+.+|+||| |+++|+|.+++.....       ..+++                    ..++.+
T Consensus        87 niv~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~~-------~~~~~--------------------~~~~~~  133 (389)
T 3gni_B           87 NIVPYRATFI-----ADNELWVVTS-FMAYGSAKDLICTHFM-------DGMNE--------------------LAIAYI  133 (389)
T ss_dssp             TBCCEEEEEE-----ETTEEEEEEE-CCTTCBHHHHHHHTCT-------TCCCH--------------------HHHHHH
T ss_pred             CCCcEeEEEE-----ECCEEEEEEE-ccCCCCHHHHHhhhcc-------cCCCH--------------------HHHHHH
Confidence            9999999999     7789999999 9999999999987520       13444                    467889


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC----------------CCCCCCCcccccCC-C
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE----------------DGPNNSSPDSNMDR-R  299 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~----------------~~~~Y~APE~l~~~-~  299 (667)
                      +.||+.||+|||++||+||||||+|||++. ++.+||+|||.+.....                +.+.|+|||++.+. .
T Consensus       134 ~~qi~~~l~~LH~~~ivHrDlkp~NIll~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  212 (389)
T 3gni_B          134 LQGVLKALDYIHHMGYVHRSVKASHILISV-DGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQ  212 (389)
T ss_dssp             HHHHHHHHHHHHHTTEECCCCSGGGEEECT-TCCEEECCGGGCEECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSS
T ss_pred             HHHHHHHHHHHHhCCeecCCCCHHHEEEcC-CCCEEEcccccceeeccccccccccccccccccccccccCHHHHhccCC
Confidence            999999999999999999999999999998 89999999998864321                22459999977654 5


Q ss_pred             CCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhcc-CCCh----------hHH-------------HHHHHHHhccC
Q 005958          300 QMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTK-GIDP----------SCL-------------REFLLQVLNRN  355 (667)
Q Consensus       300 ~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~-g~~~----------~~l-------------~~~~~~~~~~~  355 (667)
                      .|+.++|||||||++|||++|++||.+........... +..+          ..+             ...........
T Consensus       213 ~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (389)
T 3gni_B          213 GYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRP  292 (389)
T ss_dssp             CBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC-------------------------------------------
T ss_pred             CCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCccccccccccccccccccccccccccccccccCcccc
Confidence            79999999999999999999999997432211111111 0000          000             00000000000


Q ss_pred             CCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCCCCC
Q 005958          356 SSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPRWRV  407 (667)
Q Consensus       356 ~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~~~~  407 (667)
                      ........+....+++++++||.+||++||++|||++|+|+||||++..+..
T Consensus       293 ~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~hp~f~~~~~~~  344 (389)
T 3gni_B          293 SNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSFFKQIKRRA  344 (389)
T ss_dssp             -------------CCHHHHHHHHHHTCSCTTTSCCHHHHTTSGGGGGC---C
T ss_pred             ccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhcCHHHHHHhhcc
Confidence            0000111234456789999999999999999999999999999999877543

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=2.7e-44  Score=376.88  Aligned_cols=270  Identities=19%  Similarity=0.233  Sum_probs=209.5

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      +++|++++.||+|+||    +||+|.+..     +++.||||++....    ..+.+.+|+.++++++      ||||++
T Consensus         2 ~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~------h~~i~~   66 (311)
T 4agu_A            2 MEKYEKIGKIGEGSYG----VVFKCRNRD-----TGQIVAIKKFLESEDDPVIKKIALREIRMLKQLK------HPNLVN   66 (311)
T ss_dssp             -CCEEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCC------CTTBCC
T ss_pred             cccceEeeEEeecCCe----EEEEEEeCC-----CCcEEEEEEeeccccchHHHHHHHHHHHHHHhCC------CCCccc
Confidence            4789999999999999    999999987     79999999986532    2345678999999995      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     ..+..++||| |+++++|.+++...+         .+++                    ..++.++.||
T Consensus        67 ~~~~~~-----~~~~~~lv~e-~~~~~~l~~~~~~~~---------~~~~--------------------~~~~~i~~~l  111 (311)
T 4agu_A           67 LLEVFR-----RKRRLHLVFE-YCDHTVLHELDRYQR---------GVPE--------------------HLVKSITWQT  111 (311)
T ss_dssp             EEEEEE-----ETTEEEEEEE-CCSEEHHHHHHHTSS---------CCCH--------------------HHHHHHHHHH
T ss_pred             hhheee-----cCCeEEEEEE-eCCCchHHHHHhhhc---------CCCH--------------------HHHHHHHHHH
Confidence            999998     7789999999 999989999887643         3454                    4578899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      +.||.|||++||+||||||+|||++. ++.+||+|||++......         .+.|+|||++.+...++.++||||||
T Consensus       112 ~~~l~~lH~~~ivH~dlkp~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG  190 (311)
T 4agu_A          112 LQAVNFCHKHNCIHRDVKPENILITK-HSVIKLCDFGFARLLTGPSDYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIG  190 (311)
T ss_dssp             HHHHHHHHHTTEECCCCSGGGEEECT-TSCEEECCCTTCEECC------------GGGCCHHHHHTCSCCCTHHHHHHHH
T ss_pred             HHHHHHHHHCCCcCCCCChhhEEEcC-CCCEEEeeCCCchhccCcccccCCCcCCccccChHHHhcCCCCCcchhhHHHH
Confidence            99999999999999999999999998 899999999999865532         25699999887777899999999999


Q ss_pred             HHHHHHHhCCCCChhhh---hhhhhhhccCCChhHHHHHHHH-HhccCC--C--CCCCC-cccccCCCHHHHHHHHHhhh
Q 005958          312 FMMAKMVLRELMDPLIF---TKFKSFLTKGIDPSCLREFLLQ-VLNRNS--S--SGNTG-FQILDRNWGAGWNLLSLLLA  382 (667)
Q Consensus       312 viLyemltG~~PF~~~~---~~~~~~~~~g~~~~~l~~~~~~-~~~~~~--~--~~~~~-~~~~~~~s~e~~dLI~~~L~  382 (667)
                      |++|+|++|.+||.+..   ....+....+............ ......  +  ..... ....+.+++++.+||.+||+
T Consensus       191 ~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~  270 (311)
T 4agu_A          191 CVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLH  270 (311)
T ss_dssp             HHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCC
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHhcccccccccccccccccccCcCCCccccchhhhhcccccHHHHHHHHHHcc
Confidence            99999999999997321   1222222222222221111111 000000  0  00000 11235688999999999999


Q ss_pred             cCcCCCCCHHHHHcCCCCCCCCC
Q 005958          383 TKPSKRISCLDALRHPFLCGPRW  405 (667)
Q Consensus       383 ~DP~kRpSa~elL~HPwf~~~~~  405 (667)
                      +||++|||++|+|+||||++..+
T Consensus       271 ~dP~~Rpt~~ell~hp~f~~~~~  293 (311)
T 4agu_A          271 MDPTERLTCEQLLHHPYFENIRE  293 (311)
T ss_dssp             SSTTTSCCHHHHHTSGGGTTCC-
T ss_pred             CChhhcCCHHHHhcChHHHhccC
Confidence            99999999999999999999874

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.5e-44  Score=397.13  Aligned_cols=259  Identities=16%  Similarity=0.195  Sum_probs=209.6

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-----HHHHHHHHHHHHHHhhccCCCCC
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-----QRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-----~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      .+..++|++++.||+|+||    .||+|+++.     +++.||||++++...     .+.+.+|+.++..+      .||
T Consensus        57 ~~~~~~f~~~~~lG~G~fG----~V~~~~~~~-----~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~------~hp  121 (412)
T 2vd5_A           57 RLQRDDFEILKVIGRGAFS----EVAVVKMKQ-----TGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNG------DRR  121 (412)
T ss_dssp             SCCGGGEEEEEEEEECSSC----EEEEEEETT-----TCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHS------CTT
T ss_pred             cCChhhEEEEEEEeeCCCe----EEEEEEECC-----CCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhc------CCC
Confidence            4556899999999999999    999999997     899999999976322     22357899999998      499


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++.     +.+.+||||| |+++|+|.+++.+.+        ..+++                    ..++.|
T Consensus       122 ~Iv~l~~~~~-----~~~~~~lVmE-~~~gg~L~~~l~~~~--------~~l~~--------------------~~~~~~  167 (412)
T 2vd5_A          122 WITQLHFAFQ-----DENYLYLVME-YYVGGDLLTLLSKFG--------ERIPA--------------------EMARFY  167 (412)
T ss_dssp             TBCCEEEEEE-----CSSEEEEEEC-CCCSCBHHHHHHHHS--------SCCCH--------------------HHHHHH
T ss_pred             CeeeEEEEEe-----eCCEEEEEEc-CCCCCcHHHHHHhcC--------CCCCH--------------------HHHHHH
Confidence            9999999999     7889999999 999999999998643        14555                    457889


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC----------CCCCCCCcccccC------CCC
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE----------DGPNNSSPDSNMD------RRQ  300 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~----------~~~~Y~APE~l~~------~~~  300 (667)
                      +.||+.||+|||++||+||||||+|||++. ++++||+|||+|+....          +.+.|+|||++..      ...
T Consensus       168 ~~qi~~aL~~LH~~giiHrDLKp~NILld~-~g~vkL~DFGla~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~  246 (412)
T 2vd5_A          168 LAEIVMAIDSVHRLGYVHRDIKPDNILLDR-CGHIRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGS  246 (412)
T ss_dssp             HHHHHHHHHHHHHTTEECCCCSGGGEEECT-TSCEEECCCTTCEECCTTSCEECSSCCSCGGGCCHHHHHHHHTCTTCSE
T ss_pred             HHHHHHHHHHHHHCCeeecccCHHHeeecC-CCCEEEeechhheeccCCCccccceeccccCcCCHHHHhhcccCcCCCC
Confidence            999999999999999999999999999998 89999999999976543          2477999997653      456


Q ss_pred             CCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHh-ccCCCCCCCCcccccCCCHHHHHHHHH
Q 005958          301 MMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVL-NRNSSSGNTGFQILDRNWGAGWNLLSL  379 (667)
Q Consensus       301 ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~s~e~~dLI~~  379 (667)
                      |+.++|||||||++|||++|++||.            +.........+.... ....+      .....+++++++||.+
T Consensus       247 ~~~~~DiwSlGvilyelltG~~Pf~------------~~~~~~~~~~i~~~~~~~~~p------~~~~~~s~~~~dli~~  308 (412)
T 2vd5_A          247 YGPECDWWALGVFAYEMFYGQTPFY------------ADSTAETYGKIVHYKEHLSLP------LVDEGVPEEARDFIQR  308 (412)
T ss_dssp             ECTHHHHHHHHHHHHHHHHSSCTTC------------CSSHHHHHHHHHTHHHHCCCC----------CCCHHHHHHHHT
T ss_pred             CChHHhhhHHhHHHHHHHhCCCCCC------------CCCHHHHHHHHHhcccCcCCC------ccccCCCHHHHHHHHH
Confidence            8999999999999999999999995            222222222221110 00000      1124678999999999


Q ss_pred             hhhcCcCCC---CCHHHHHcCCCCCCCCCCCCC
Q 005958          380 LLATKPSKR---ISCLDALRHPFLCGPRWRVDP  409 (667)
Q Consensus       380 ~L~~DP~kR---pSa~elL~HPwf~~~~~~~~~  409 (667)
                      ||+ +|++|   ++++|+++||||++++|....
T Consensus       309 lL~-~p~~Rlgr~~~~ei~~Hpff~~i~w~~l~  340 (412)
T 2vd5_A          309 LLC-PPETRLGRGGAGDFRTHPFFFGLDWDGLR  340 (412)
T ss_dssp             TSS-CGGGCTTTTTHHHHHTSGGGTTCCSTTST
T ss_pred             HcC-ChhhcCCCCCHHHHhcCCCcCCCCHHHHh
Confidence            999 99998   599999999999999987653

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=1.4e-44  Score=390.30  Aligned_cols=250  Identities=18%  Similarity=0.233  Sum_probs=205.5

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      .++|++.+.||+|+||    .||+|.++.     +++.||+|++....    ..+.+.+|+.+++.++      ||||++
T Consensus        28 ~~~y~~~~~lG~G~~g----~V~~~~~~~-----~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~------hpnIv~   92 (362)
T 2bdw_A           28 SDNYDVKEELGKGAFS----VVRRCVHKT-----TGLEFAAKIINTKKLSARDFQKLEREARICRKLQ------HPNIVR   92 (362)
T ss_dssp             HHHEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCC------CTTBCC
T ss_pred             ccCeEEeeEEecCCCe----EEEEEEECC-----CCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCC------CCCCCe
Confidence            4689999999999999    999999987     89999999997532    3356789999999994      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     +.+..|+||| |+.+|+|.+++...+         .+++                    ..++.++.||
T Consensus        93 ~~~~~~-----~~~~~~lv~e-~~~gg~L~~~l~~~~---------~~~~--------------------~~~~~~~~qi  137 (362)
T 2bdw_A           93 LHDSIQ-----EESFHYLVFD-LVTGGELFEDIVARE---------FYSE--------------------ADASHCIQQI  137 (362)
T ss_dssp             EEEEEE-----CSSEEEEEEC-CCCSCBHHHHHTTCS---------CCCH--------------------HHHHHHHHHH
T ss_pred             EEEEEE-----eCCEEEEEEe-cCCCCCHHHHHHHcC---------CCCH--------------------HHHHHHHHHH
Confidence            999999     7889999999 999999999998654         4555                    4567899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCC--CCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPV--DRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~--~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      +.||.|||++||+||||||+|||++..  ++.+||+|||++......        .+.|+|||++ ....|+.++|||||
T Consensus       138 ~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~Diwsl  216 (362)
T 2bdw_A          138 LESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVL-KKDPYSKPVDIWAC  216 (362)
T ss_dssp             HHHHHHHHHTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTCCSCCCSCSCTTTCCHHHH-TTCCCCTHHHHHHH
T ss_pred             HHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEeecCcceEecCCcccccCCCCccccCHHHH-ccCCCCchhhHHHH
Confidence            999999999999999999999999862  346999999999866532        3789999955 45569999999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      ||++|+|++|.+||..            .....+...+.   ......   ..+.+..+++++++||.+||+.||++|||
T Consensus       217 G~il~~ll~g~~Pf~~------------~~~~~~~~~i~---~~~~~~---~~~~~~~~~~~~~~li~~~L~~dP~~R~t  278 (362)
T 2bdw_A          217 GVILYILLVGYPPFWD------------EDQHRLYAQIK---AGAYDY---PSPEWDTVTPEAKSLIDSMLTVNPKKRIT  278 (362)
T ss_dssp             HHHHHHHHHSSCSSCC------------SSHHHHHHHHH---HTCCCC---CTTGGGGSCHHHHHHHHHHSCSSGGGSCC
T ss_pred             HHHHHHHHHCCCCCCC------------CCHHHHHHHHH---hCCCCC---CcccccCCCHHHHHHHHHHcCCChhhCcC
Confidence            9999999999999852            22222222222   111111   12234567899999999999999999999


Q ss_pred             HHHHHcCCCCCCC
Q 005958          391 CLDALRHPFLCGP  403 (667)
Q Consensus       391 a~elL~HPwf~~~  403 (667)
                      +.|+|+||||+..
T Consensus       279 ~~e~l~hp~~~~~  291 (362)
T 2bdw_A          279 ADQALKVPWICNR  291 (362)
T ss_dssp             HHHHTTSHHHHTH
T ss_pred             HHHHhcCcccCCC
Confidence            9999999999763

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=4e-45  Score=396.47  Aligned_cols=278  Identities=16%  Similarity=0.272  Sum_probs=210.0

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ...++|++++.||+|+||    +||+|++..     +++.||||++....  ....+|+++|+.+      +||||++++
T Consensus         4 ~~~~~y~~~~~lG~G~fg----~V~~a~~~~-----~~~~vAiK~~~~~~--~~~~~E~~il~~l------~hpnIv~l~   66 (383)
T 3eb0_A            4 TSSKKYSLGKTLGTGSFG----IVCEVFDIE-----SGKRFALKKVLQDP--RYKNRELDIMKVL------DHVNIIKLV   66 (383)
T ss_dssp             --CTTEEEEEEEECC-CE----EEEEEEETT-----TCCEEEEEEEECCT--TSCCHHHHHHTTC------CCTTBCCEE
T ss_pred             cccceEEEEEEEEeccCE----EEEEEEECC-----CCCEEEEEEEecCc--chHHHHHHHHHHc------CCCCccchh
Confidence            345789999999999999    999999988     89999999986532  2235799999999      499999999


Q ss_pred             EEEEeccc---------------------------------CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCC
Q 005958          163 GYVSSHTT---------------------------------SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALD  209 (667)
Q Consensus       163 ~~~~~~~~---------------------------------~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~  209 (667)
                      +++.....                                 ....++++||| |+++ +|.+.+....     .....++
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e-~~~~-~L~~~l~~~~-----~~~~~l~  139 (383)
T 3eb0_A           67 DYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIME-YVPD-TLHKVLKSFI-----RSGRSIP  139 (383)
T ss_dssp             EEEEEC-------------------------------------CCEEEEEEC-CCSE-EHHHHHHHHH-----HTTCCCC
T ss_pred             heeeecCcccccccccccccccccccccccccccccccccCCCceEEEEEEe-cCCc-cHHHHHHHHH-----hcCCCCC
Confidence            99964321                                 24556999999 9996 9888886421     0011344


Q ss_pred             HHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC----
Q 005958          210 EESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED----  285 (667)
Q Consensus       210 E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~----  285 (667)
                      +                    ..++.++.||+.||.|||++||+||||||+|||++..++.+||+|||+|+.....    
T Consensus       140 ~--------------------~~~~~i~~qi~~aL~~LH~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~  199 (383)
T 3eb0_A          140 M--------------------NLISIYIYQLFRAVGFIHSLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSV  199 (383)
T ss_dssp             H--------------------HHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSCCC
T ss_pred             H--------------------HHHHHHHHHHHHHHHHHHHCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCCCc
Confidence            3                    5678899999999999999999999999999999854899999999999865433    


Q ss_pred             ----CCCCCCcccccCCCCCCchhhHHHHHHHHHHHHhCCCCChh---hhhhhhhhhccCCChhHHHHHHHHHhccC--C
Q 005958          286 ----GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPL---IFTKFKSFLTKGIDPSCLREFLLQVLNRN--S  356 (667)
Q Consensus       286 ----~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG~~PF~~---~~~~~~~~~~~g~~~~~l~~~~~~~~~~~--~  356 (667)
                          .+.|+|||++.+...|+.++||||+||++|||++|++||.+   .++...+....|.+...............  +
T Consensus       200 ~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~  279 (383)
T 3eb0_A          200 AYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFP  279 (383)
T ss_dssp             CCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCC
T ss_pred             CcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCC
Confidence                26799999877777799999999999999999999999973   34455555556665543222211110000  0


Q ss_pred             CCCCCCc--ccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          357 SSGNTGF--QILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       357 ~~~~~~~--~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      ......+  ......++++++||.+||++||++|||+.|+|+||||++.+
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~  329 (383)
T 3eb0_A          280 TLKAKDWRKILPEGTPSLAIDLLEQILRYEPDLRINPYEAMAHPFFDHLR  329 (383)
T ss_dssp             CCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGHHHH
T ss_pred             ccCcccHHhhCCCCCCHHHHHHHHHHccCChhhCCCHHHHhcCHHHHHHH
Confidence            0000001  13345789999999999999999999999999999998754

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=3.2e-44  Score=385.19  Aligned_cols=257  Identities=19%  Similarity=0.201  Sum_probs=198.0

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      ..++|++.+.||+|+||    .||+|++..     +++.||||++......+.+.+|+++|++++      ||||+++++
T Consensus        51 ~~~~y~~~~~lG~G~~g----~Vy~~~~~~-----~~~~vavK~~~~~~~~~~~~~E~~~l~~l~------h~niv~~~~  115 (349)
T 2w4o_A           51 LSDFFEVESELGRGATS----IVYRCKQKG-----TQKPYALKVLKKTVDKKIVRTEIGVLLRLS------HPNIIKLKE  115 (349)
T ss_dssp             GGGTEEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEEEC----------CHHHHHCC------CTTBCCEEE
T ss_pred             ccCcEEEeeEEeeCCCE----EEEEEEECC-----CCcEEEEEEeccchhHHHHHHHHHHHHhCC------CCCCcceee
Confidence            34789999999999999    999999997     789999999987666667789999999995      999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++.     ..+.+++||| |+++|+|.+++...+         .+++                    ..++.++.||+.|
T Consensus       116 ~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~~i~~qi~~~  160 (349)
T 2w4o_A          116 IFE-----TPTEISLVLE-LVTGGELFDRIVEKG---------YYSE--------------------RDAADAVKQILEA  160 (349)
T ss_dssp             EEE-----CSSEEEEEEC-CCCSCBHHHHHTTCS---------SCCH--------------------HHHHHHHHHHHHH
T ss_pred             eEe-----cCCeEEEEEE-eCCCCCHHHHHHhcC---------CCCH--------------------HHHHHHHHHHHHH
Confidence            998     7789999999 999999999998654         4554                    4577899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcC--CCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISP--VDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~--~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      |.|||++||+||||||+|||++.  .++.+||+|||+++.....        .+.|+|||++. ...|+.++|||||||+
T Consensus       161 L~~LH~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwslG~i  239 (349)
T 2w4o_A          161 VAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILR-GCAYGPEVDMWSVGII  239 (349)
T ss_dssp             HHHHHHTTCCCCCCCGGGEEESSSSTTCCEEECCCC----------------CGGGSCHHHHT-TCCCCTHHHHHHHHHH
T ss_pred             HHHHHHCCeEecCCCcccEEEecCCCCCCEEEccCccccccCcccccccccCCCCccCHHHhc-CCCCCcccchHHHHHH
Confidence            99999999999999999999973  3688999999999865432        36799999654 4568999999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      +|||++|..||...           ........   .+......   ...+....+++++++||.+||+.||++|||+.|
T Consensus       240 l~ell~g~~pf~~~-----------~~~~~~~~---~i~~~~~~---~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e  302 (349)
T 2w4o_A          240 TYILLCGFEPFYDE-----------RGDQFMFR---RILNCEYY---FISPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQ  302 (349)
T ss_dssp             HHHHHHSSCTTCCT-----------TCHHHHHH---HHHTTCCC---CCTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHH
T ss_pred             HHHHHhCCCCCCCC-----------cccHHHHH---HHHhCCCc---cCCchhhhCCHHHHHHHHHHccCChhhCcCHHH
Confidence            99999999998521           11111111   12221111   111234567899999999999999999999999


Q ss_pred             HHcCCCCCCCCCCCC
Q 005958          394 ALRHPFLCGPRWRVD  408 (667)
Q Consensus       394 lL~HPwf~~~~~~~~  408 (667)
                      +|+||||.+......
T Consensus       303 ~l~hp~~~~~~~~~~  317 (349)
T 2w4o_A          303 ALQHPWVTGKAANFV  317 (349)
T ss_dssp             HHHSTTTTSTTCCCS
T ss_pred             HhcCcccCCCccchh
Confidence            999999998775443

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=2.2e-44  Score=401.57  Aligned_cols=270  Identities=21%  Similarity=0.281  Sum_probs=207.1

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      ..++|++++.||+|+||    +||+|++..     +++.||||++...    ...+.+.+|+.+|+.++      ||||+
T Consensus        60 ~~~~y~~~~~lG~G~~g----~V~~a~~~~-----~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~------hpnIv  124 (464)
T 3ttj_A           60 VLKRYQNLKPIGSGAQG----IVCAAYDAV-----LDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVN------HKNII  124 (464)
T ss_dssp             EETTEEEEEEEEECSSC----EEEEEEETT-----TTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCC------CTTBC
T ss_pred             ecCCeEEEEEeecCCCe----EEEEEEECC-----CCCEEEEEEECccccChHHHHHHHHHHHHHHhCC------CCCCC
Confidence            35899999999999999    999999998     8999999999752    23456789999999994      99999


Q ss_pred             EEEEEEEeccc-CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          160 QVHGYVSSHTT-SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       160 ~l~~~~~~~~~-~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      ++++++..... .+...+||||| |+++ +|.+.+..           .+++                    ..++.+++
T Consensus       125 ~l~~~~~~~~~~~~~~~~~lv~E-~~~~-~l~~~~~~-----------~l~~--------------------~~~~~~~~  171 (464)
T 3ttj_A          125 SLLNVFTPQKTLEEFQDVYLVME-LMDA-NLCQVIQM-----------ELDH--------------------ERMSYLLY  171 (464)
T ss_dssp             CCSEEECSCCSTTTCCEEEEEEE-CCSE-EHHHHHTS-----------CCCH--------------------HHHHHHHH
T ss_pred             cEEEEEccCCccccCCeEEEEEe-CCCC-CHHHHHhh-----------cCCH--------------------HHHHHHHH
Confidence            99999974321 24467899999 9998 78887753           3454                    45788999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHH
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      ||+.||+|||++||+||||||+|||++. ++.+||+|||+|+.....        .+.|+|||++.+ ..|+.++|||||
T Consensus       172 qil~aL~~lH~~~iiHrDlkp~NIll~~-~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSl  249 (464)
T 3ttj_A          172 QMLCGIKHLHSAGIIHRDLKPSNIVVKS-DCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILG-MGYKENVDIWSV  249 (464)
T ss_dssp             HHHHHHHHHHHTTCCCCCCCGGGEEECT-TSCEEECCCCCC-----CCCC----CCCTTCCHHHHTT-CCCCTTHHHHHH
T ss_pred             HHHHHHHHHHHCCcccCCCChHhEEEeC-CCCEEEEEEEeeeecCCCcccCCCcccccccCHHHHcC-CCCCHHHHHHHH
Confidence            9999999999999999999999999998 899999999999866543        377999996655 469999999999


Q ss_pred             HHHHHHHHhCCCCChh---hhhhhhhhhccCCChhHHHH----HHHHHhccCCCCCCCCcc-cccC------------CC
Q 005958          311 GFMMAKMVLRELMDPL---IFTKFKSFLTKGIDPSCLRE----FLLQVLNRNSSSGNTGFQ-ILDR------------NW  370 (667)
Q Consensus       311 GviLyemltG~~PF~~---~~~~~~~~~~~g~~~~~l~~----~~~~~~~~~~~~~~~~~~-~~~~------------~s  370 (667)
                      ||++|||++|++||++   .++...++...|.+......    .........+......++ ..+.            .+
T Consensus       250 G~il~ell~g~~pF~g~~~~~~~~~i~~~lg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  329 (464)
T 3ttj_A          250 GCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKA  329 (464)
T ss_dssp             HHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTTSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHcchhhhhHhhcccccCCCChHHhCcccccccccccccccC
Confidence            9999999999999984   34455555555655433221    112222222211111111 0111            15


Q ss_pred             HHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCC
Q 005958          371 GAGWNLLSLLLATKPSKRISCLDALRHPFLCGP  403 (667)
Q Consensus       371 ~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~  403 (667)
                      +++++||.+||++||++|||++|+|+||||+..
T Consensus       330 ~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~~~~~  362 (464)
T 3ttj_A          330 SQARDLLSKMLVIDPAKRISVDDALQHPYINVW  362 (464)
T ss_dssp             HHHHHHHHHHSCSSTTTSCCHHHHHTSTTTGGG
T ss_pred             HHHHHHHHHHcCCChhhCCCHHHHhcChhhhhc
Confidence            789999999999999999999999999999853

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=2.8e-44  Score=379.97  Aligned_cols=269  Identities=22%  Similarity=0.280  Sum_probs=208.6

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      ..++|++++.||+|+||    .||+|++..     +++.||||++... ..+.+.+|+.++++++     +||||+++++
T Consensus        34 ~~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vavK~~~~~-~~~~~~~E~~~l~~l~-----~~~~i~~~~~   98 (330)
T 3nsz_A           34 NQDDYQLVRKLGRGKYS----EVFEAINIT-----NNEKVVVKILKPV-KKKKIKREIKILENLR-----GGPNIITLAD   98 (330)
T ss_dssp             EGGGEEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEECSC-CHHHHHHHHHHHHHHT-----TSTTBCCEEE
T ss_pred             CCCceEEEEEecccCCe----EEEEEEECC-----CCcEEEEEEeccc-chHHHHHHHHHHHHcC-----CCCCEEEeee
Confidence            35789999999999999    999999988     7999999999754 3456889999999996     6999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++..+   .....++||| |+++++|.+++..            +++                    ..++.++.||+.|
T Consensus        99 ~~~~~---~~~~~~lv~e-~~~~~~l~~~~~~------------~~~--------------------~~~~~~~~qi~~~  142 (330)
T 3nsz_A           99 IVKDP---VSRTPALVFE-HVNNTDFKQLYQT------------LTD--------------------YDIRFYMYEILKA  142 (330)
T ss_dssp             EEECT---TTCCEEEEEE-CCCCCCHHHHGGG------------CCH--------------------HHHHHHHHHHHHH
T ss_pred             eeccC---CCCceEEEEe-ccCchhHHHHHHh------------CCH--------------------HHHHHHHHHHHHH
Confidence            99843   4778999999 9999999998753            443                    4578899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMA  315 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSLGviLy  315 (667)
                      |.|||++||+||||||+|||++.++..+||+|||+|......        .+.|+|||++.+...++.++|||||||++|
T Consensus       143 l~~lH~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~  222 (330)
T 3nsz_A          143 LDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLA  222 (330)
T ss_dssp             HHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHH
T ss_pred             HHHHHhCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCCccccccccccccChhhhcCCCcCCchhhHHHHHHHHH
Confidence            999999999999999999999973459999999999865433        256999998777678999999999999999


Q ss_pred             HHHhCCCCChh----hhhhhhhhhccCCChhHHHHHHHH-----------HhccCCCCCCC---CcccccCCCHHHHHHH
Q 005958          316 KMVLRELMDPL----IFTKFKSFLTKGIDPSCLREFLLQ-----------VLNRNSSSGNT---GFQILDRNWGAGWNLL  377 (667)
Q Consensus       316 emltG~~PF~~----~~~~~~~~~~~g~~~~~l~~~~~~-----------~~~~~~~~~~~---~~~~~~~~s~e~~dLI  377 (667)
                      +|++|+.||..    ..++..+....+.  ..+.+.+..           ...........   .......+++++++||
T Consensus       223 ~ll~g~~p~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  300 (330)
T 3nsz_A          223 SMIFRKEPFFHGHDNYDQLVRIAKVLGT--EDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFL  300 (330)
T ss_dssp             HHHHTCSSSSCCSSHHHHHHHHHHHHCH--HHHHHHHHHTTCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHH
T ss_pred             HHHhCCCCcccCCchHHHHHHHHHhcCC--chhhhHHHHhccccccchhhhhhhccccchhhhccccccccCCHHHHHHH
Confidence            99999999841    1222222222221  111111111           11111110000   0112233789999999


Q ss_pred             HHhhhcCcCCCCCHHHHHcCCCCCCCCC
Q 005958          378 SLLLATKPSKRISCLDALRHPFLCGPRW  405 (667)
Q Consensus       378 ~~~L~~DP~kRpSa~elL~HPwf~~~~~  405 (667)
                      .+||++||++|||++|+|+||||++..+
T Consensus       301 ~~~L~~dP~~Rpta~e~l~hp~f~~~~~  328 (330)
T 3nsz_A          301 DKLLRYDHQSRLTAREAMEHPYFYTVVK  328 (330)
T ss_dssp             HTTSCSSGGGSCCHHHHHTSGGGTTCC-
T ss_pred             HHHhcCCcccCCCHHHHhcCccHhhhcc
Confidence            9999999999999999999999998763

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=2.4e-44  Score=382.39  Aligned_cols=253  Identities=16%  Similarity=0.207  Sum_probs=201.5

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh------hHHHHHHHHHHHHHHhhccCCCC
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ------AQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~------~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      .+..++|++.+.||+|+||    .||+|++...  ..+++.||+|++++..      ....+.+|+.+|+.++      |
T Consensus        13 ~~~~~~y~~~~~lG~G~~g----~V~~~~~~~~--~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~------h   80 (327)
T 3a62_A           13 KIRPECFELLRVLGKGGYG----KVFQVRKVTG--ANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVK------H   80 (327)
T ss_dssp             CCCGGGEEEEEEEEEETTE----EEEEEEECSS--TTTTCEEEEEEECCC--------------HHHHHHHCC------C
T ss_pred             CCCHHHeEEEEEEEeCCCE----EEEEEEEecc--CCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCC------C
Confidence            4566899999999999999    9999998621  1278999999997532      2234578999999994      9


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      |||+++++++.     ..+.+|+||| |+++|+|.+++...+         .+++                    ..++.
T Consensus        81 p~iv~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~~  125 (327)
T 3a62_A           81 PFIVDLIYAFQ-----TGGKLYLILE-YLSGGELFMQLEREG---------IFME--------------------DTACF  125 (327)
T ss_dssp             TTBCCEEEEEE-----CSSCEEEEEE-CCTTEEHHHHHHHHS---------SCCH--------------------HHHHH
T ss_pred             CCccceeEEEE-----cCCEEEEEEe-CCCCCcHHHHHHhCC---------CCCH--------------------HHHHH
Confidence            99999999999     7889999999 999999999998754         4555                    35678


Q ss_pred             HHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhh
Q 005958          236 LMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       236 i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksD  306 (667)
                      ++.||+.||.|||++||+||||||+|||++. ++.+||+|||+++....         +.+.|+|||++. ...++.++|
T Consensus       126 ~~~qi~~al~~lH~~~ivH~Dlkp~Nill~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~D  203 (327)
T 3a62_A          126 YLAEISMALGHLHQKGIIYRDLKPENIMLNH-QGHVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILM-RSGHNRAVD  203 (327)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCCTTTEEECT-TSCEEECCCSCC----------CTTSSCCTTSCHHHHT-TSCCCTHHH
T ss_pred             HHHHHHHHHHHHHhCCEEcccCCHHHeEECC-CCcEEEEeCCcccccccCCccccccCCCcCccCHhhCc-CCCCCCccc
Confidence            9999999999999999999999999999998 89999999999875322         347899999654 456899999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          307 MRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       307 IWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      ||||||++|||++|++||..            .........   +....       ....+.+++++++||.+||+.||+
T Consensus       204 iwslG~il~el~~g~~pf~~------------~~~~~~~~~---i~~~~-------~~~p~~~~~~~~~li~~~L~~dp~  261 (327)
T 3a62_A          204 WWSLGALMYDMLTGAPPFTG------------ENRKKTIDK---ILKCK-------LNLPPYLTQEARDLLKKLLKRNAA  261 (327)
T ss_dssp             HHHHHHHHHHHHHSSCSCCC------------SSHHHHHHH---HHHTC-------CCCCTTSCHHHHHHHHHHSCSCGG
T ss_pred             chhHHHHHHHHHHCCCCCCC------------CCHHHHHHH---HHhCC-------CCCCCCCCHHHHHHHHHHHhcCHh
Confidence            99999999999999999952            222222222   22211       123356789999999999999999


Q ss_pred             CCC-----CHHHHHcCCCCCCCCC
Q 005958          387 KRI-----SCLDALRHPFLCGPRW  405 (667)
Q Consensus       387 kRp-----Sa~elL~HPwf~~~~~  405 (667)
                      +||     +++|+++||||++..|
T Consensus       262 ~R~~~~~~~~~e~l~hp~f~~~~~  285 (327)
T 3a62_A          262 SRLGAGPGDAGEVQAHPFFRHINW  285 (327)
T ss_dssp             GSTTSSTTTHHHHHHSGGGSSCCH
T ss_pred             hccCCCCCCHHHHHcCCcccCCCH
Confidence            999     8999999999998875

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=9e-45  Score=388.24  Aligned_cols=247  Identities=19%  Similarity=0.270  Sum_probs=204.6

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      ..+++|++.+.||+|+||    .||+|.+..     +++.||||++....     ....+.+|+.+++.++      |||
T Consensus         6 ~~i~~Y~i~~~lG~G~~g----~V~~a~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~------hpn   70 (336)
T 3h4j_B            6 RHIGPYIIRETLGEGSFG----KVKLATHYK-----TQQKVALKFISRQLLKKSDMHMRVEREISYLKLLR------HPH   70 (336)
T ss_dssp             SEETTEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCC------CTT
T ss_pred             cccCCEEEEEEEecCCCe----EEEEEEECC-----CCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCC------CCC
Confidence            456899999999999999    999999987     89999999997532     2246789999999994      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     ..+.+++||| |++ |+|.+++...+         .+++                    ..++.++
T Consensus        71 Iv~l~~~~~-----~~~~~~lv~E-~~~-g~l~~~l~~~~---------~l~~--------------------~~~~~i~  114 (336)
T 3h4j_B           71 IIKLYDVIT-----TPTDIVMVIE-YAG-GELFDYIVEKK---------RMTE--------------------DEGRRFF  114 (336)
T ss_dssp             BCCEEEEEE-----CSSEEEEEEC-CCC-EEHHHHHHHHC---------SCCH--------------------HHHHHHH
T ss_pred             CCeEEEEEE-----eCCEEEEEEE-CCC-CcHHHHHHHcC---------CCCH--------------------HHHHHHH
Confidence            999999999     7789999999 995 59999998754         4555                    4567899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHH
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRC  309 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWS  309 (667)
                      .||+.||.|||++||+||||||+|||++. ++.+||+|||++......        .+.|+|||++.+...++.++||||
T Consensus       115 ~qi~~aL~~LH~~givH~Dlkp~NIll~~-~~~~kl~DFG~s~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Diws  193 (336)
T 3h4j_B          115 QQIICAIEYCHRHKIVHRDLKPENLLLDD-NLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVINGKLYAGPEVDVWS  193 (336)
T ss_dssp             HHHHHHHHHHHHHTCCCCCCSTTTEEECT-TCCEEECCSSCTBTTTTSBTTCCCTTSTTTSCGGGSCCSGGGCHHHHHHH
T ss_pred             HHHHHHHHHHHHCCeEecCCchhhEEEcC-CCCEEEEEeccceeccCCcccccccCCcCcCCHHHHcCCCCCCCccchhH
Confidence            99999999999999999999999999998 899999999999765432        378999997766555589999999


Q ss_pred             HHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          310 VGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       310 LGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      |||++|+|++|++||.+.....            +       . .  .........+..+++++++||.+||+.||.+||
T Consensus       194 lG~il~~ll~g~~Pf~~~~~~~------------~-------~-~--~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~Rp  251 (336)
T 3h4j_B          194 CGIVLYVMLVGRLPFDDEFIPN------------L-------F-K--KVNSCVYVMPDFLSPGAQSLIRRMIVADPMQRI  251 (336)
T ss_dssp             HHHHHHHHHHSSCSSBCSSSTT------------C-------B-C--CCCSSCCCCCTTSCHHHHHHHHTTSCSSGGGSC
T ss_pred             HHHHHHHHHhCCCCCCCccHHH------------H-------H-H--HHHcCCCCCcccCCHHHHHHHHHHcCCChhHCc
Confidence            9999999999999996321000            0       0 0  001112234456789999999999999999999


Q ss_pred             CHHHHHcCCCCCCC
Q 005958          390 SCLDALRHPFLCGP  403 (667)
Q Consensus       390 Sa~elL~HPwf~~~  403 (667)
                      |++|+++||||+..
T Consensus       252 t~~eil~hp~~~~~  265 (336)
T 3h4j_B          252 TIQEIRRDPWFNVN  265 (336)
T ss_dssp             CHHHHTTCHHHHTT
T ss_pred             CHHHHHhChhhccC
Confidence            99999999999864

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=8.7e-45  Score=379.06  Aligned_cols=249  Identities=20%  Similarity=0.286  Sum_probs=198.8

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh----------------------------H
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA----------------------------Q  134 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~----------------------------~  134 (667)
                      +.+++|++.+.||+|+||    .||+|++..     +++.||||++.....                            .
T Consensus        10 ~~~~~y~~~~~lG~G~~g----~Vy~a~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (298)
T 2zv2_A           10 VQLNQYTLKDEIGKGSYG----VVKLAYNEN-----DNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPI   80 (298)
T ss_dssp             CEETTEEEEEEEEC--CC----EEEEEEETT-----TTEEEEEEEEECC-------------------------------
T ss_pred             eeecceEEEeEEeecCCE----EEEEEEECC-----CCcEEEEEEeehhhhhhhcccccccccccccccccccccccchH
Confidence            456899999999999999    999999987     799999999975321                            1


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHh
Q 005958          135 RRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVR  214 (667)
Q Consensus       135 ~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~  214 (667)
                      +.+.+|+++|++++      ||||+++++++...   ..+.+|+||| |+++|+|.+++...          .+++    
T Consensus        81 ~~~~~E~~~l~~l~------h~~iv~~~~~~~~~---~~~~~~lv~e-~~~~~~l~~~~~~~----------~~~~----  136 (298)
T 2zv2_A           81 EQVYQEIAILKKLD------HPNVVKLVEVLDDP---NEDHLYMVFE-LVNQGPVMEVPTLK----------PLSE----  136 (298)
T ss_dssp             CHHHHHHHHHHTCC------CTTBCCEEEEEECS---SSSEEEEEEE-CCTTCBSCCSSCSS----------CCCH----
T ss_pred             HHHHHHHHHHHhCC------CCCCCeEEEEEEcC---CCCEEEEEEe-cCCCCcHHHHhhcC----------CCCH----
Confidence            34688999999994      99999999999843   4678999999 99998997754321          3454    


Q ss_pred             hcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------
Q 005958          215 KVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------  285 (667)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------  285 (667)
                                      ..++.++.||+.||.|||++||+||||||+|||++. ++.+||+|||++......         
T Consensus       137 ----------------~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~g  199 (298)
T 2zv2_A          137 ----------------DQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGE-DGHIKIADFGVSNEFKGSDALLSNTVG  199 (298)
T ss_dssp             ----------------HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECT-TSCEEECCCTTCEECSSSSCEECCCCS
T ss_pred             ----------------HHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEECC-CCCEEEecCCCccccccccccccCCcC
Confidence                            457889999999999999999999999999999998 899999999999865432         


Q ss_pred             CCCCCCcccccCCCC--CCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCc
Q 005958          286 GPNNSSPDSNMDRRQ--MMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGF  363 (667)
Q Consensus       286 ~~~Y~APE~l~~~~~--ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~  363 (667)
                      .+.|+|||++.+...  ++.++|||||||++|+|++|++||..            .....+...+.   ....     .+
T Consensus       200 t~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~------------~~~~~~~~~~~---~~~~-----~~  259 (298)
T 2zv2_A          200 TPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMD------------ERIMCLHSKIK---SQAL-----EF  259 (298)
T ss_dssp             CGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCC------------SSHHHHHHHHH---HCCC-----CC
T ss_pred             CccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCC------------ccHHHHHHHHh---cccC-----CC
Confidence            367999997655442  47899999999999999999999852            12222222221   1111     12


Q ss_pred             ccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCC
Q 005958          364 QILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLC  401 (667)
Q Consensus       364 ~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~  401 (667)
                      +..+.+++++++||.+||+.||++|||+.|+|+||||+
T Consensus       260 ~~~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~hp~~~  297 (298)
T 2zv2_A          260 PDQPDIAEDLKDLITRMLDKNPESRIVVPEIKLHPWVT  297 (298)
T ss_dssp             CSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTCHHHH
T ss_pred             CCccccCHHHHHHHHHHhhcChhhCCCHHHHhcCcccc
Confidence            23356789999999999999999999999999999985

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=1.1e-44  Score=384.63  Aligned_cols=250  Identities=19%  Similarity=0.227  Sum_probs=204.6

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh---HHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA---QRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~---~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      .++|++.+.||+|+||    +||+|++..     +++.||||++.....   .+.+.+|+.+++.++      ||||+++
T Consensus         6 ~~~y~i~~~lG~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~------hpnIv~~   70 (323)
T 3tki_A            6 VEDWDLVQTLGEGAYG----EVQLAVNRV-----TEEAVAVKIVDMKRAVDCPENIKKEICINKMLN------HENVVKF   70 (323)
T ss_dssp             TTCEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEECC-------CHHHHHHHHHHCC------CTTBCCE
T ss_pred             hhhceeeeEEecCCCE----EEEEEEECC-----CCcEEEEEEEEcccccchHHHHHHHHHHHHhCC------CCCCCeE
Confidence            5899999999999999    999999998     799999999865322   345689999999994      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     +.+..|+||| |+++|+|.+++....         .+++                    ..++.++.||+
T Consensus        71 ~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~~i~~qi~  115 (323)
T 3tki_A           71 YGHRR-----EGNIQYLFLE-YCSGGELFDRIEPDI---------GMPE--------------------PDAQRFFHQLM  115 (323)
T ss_dssp             EEEEE-----CSSEEEEEEE-CCTTEEGGGGSBTTT---------BCCH--------------------HHHHHHHHHHH
T ss_pred             EEEEe-----cCCeEEEEEE-cCCCCcHHHHHhhcC---------CCCH--------------------HHHHHHHHHHH
Confidence            99999     7889999999 999999999887543         4554                    45788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-----------CCCCCCCcccccCCCCCCchhhHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-----------DGPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-----------~~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      .||+|||++||+||||||+|||++. ++.+||+|||++..+..           +.+.|+|||++.+...++.++|||||
T Consensus       116 ~aL~~LH~~givH~Dlkp~NIll~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Diwsl  194 (323)
T 3tki_A          116 AGVVYLHGIGITHRDIKPENLLLDE-RDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSC  194 (323)
T ss_dssp             HHHHHHHHTTEECSCCSGGGEEECT-TCCEEECCCTTCEECEETTEECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHH
T ss_pred             HHHHHHHHCCccccccchHHEEEeC-CCCEEEEEeeccceeccCCcccccCCCccCcCccCcHHhccCCCCCCcccHHHH
Confidence            9999999999999999999999998 89999999999975432           23679999977766656889999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      ||++|+|++|++||.....          .........    ..     .........+++++.+||.+||+.||++|||
T Consensus       195 G~il~~ll~g~~pf~~~~~----------~~~~~~~~~----~~-----~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t  255 (323)
T 3tki_A          195 GIVLTAMLAGELPWDQPSD----------SCQEYSDWK----EK-----KTYLNPWKKIDSAPLALLHKILVENPSARIT  255 (323)
T ss_dssp             HHHHHHHHHSSCSCSSSCT----------TSHHHHHHH----TT-----CTTSTTGGGSCHHHHHHHHHHSCSSTTTSCC
T ss_pred             HHHHHHHHhCCCCCCCCch----------HHHHHHHHh----cc-----cccCCccccCCHHHHHHHHHHccCChhhCcC
Confidence            9999999999999953211          111111111    00     1112234567899999999999999999999


Q ss_pred             HHHHHcCCCCCCCC
Q 005958          391 CLDALRHPFLCGPR  404 (667)
Q Consensus       391 a~elL~HPwf~~~~  404 (667)
                      ++|+|+||||+...
T Consensus       256 ~~eil~h~~~~~~~  269 (323)
T 3tki_A          256 IPDIKKDRWYNKPL  269 (323)
T ss_dssp             HHHHTTCTTTTCCC
T ss_pred             HHHHhhChhhcccc
Confidence            99999999998754

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=8.8e-45  Score=389.66  Aligned_cols=254  Identities=16%  Similarity=0.208  Sum_probs=203.6

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-------hHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-------AQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-------~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      .++|++.+.||+|+||    +||+|+++.     +++.||||++....       ..+.+.+|+.+++.++      |||
T Consensus        23 ~~~y~~~~~lG~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~------hpn   87 (351)
T 3c0i_A           23 EDVYELCEVIGKGPFS----VVRRCINRE-----TGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLK------HPH   87 (351)
T ss_dssp             HHHEEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCC------CTT
T ss_pred             ccceEEeeEEeeCCCE----EEEEEEECC-----CCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCC------CCC
Confidence            4689999999999999    999999998     89999999997532       2456789999999994      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     ..+.+|+||| |+++|+|.+++.....     ....++|                    ..++.++
T Consensus        88 Iv~~~~~~~-----~~~~~~lv~e-~~~g~~L~~~l~~~~~-----~~~~~~~--------------------~~~~~i~  136 (351)
T 3c0i_A           88 IVELLETYS-----SDGMLYMVFE-FMDGADLCFEIVKRAD-----AGFVYSE--------------------AVASHYM  136 (351)
T ss_dssp             BCCEEEEEE-----ETTEEEEEEE-CCSSCBHHHHHHHHHH-----TTCCCCH--------------------HHHHHHH
T ss_pred             CCcEEEEEE-----eCCEEEEEEe-CCCCCCHHHHHHHhcc-----cCCCCCH--------------------HHHHHHH
Confidence            999999998     7789999999 9999999998865320     0113454                    4577899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCC--CCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhh
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPV--DRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~--~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksD  306 (667)
                      .||+.||.|||++||+||||||+|||++.+  .+.+||+|||++......         .+.|+|||++. ...|+.++|
T Consensus       137 ~qi~~al~~lH~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~D  215 (351)
T 3c0i_A          137 RQILEALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVVK-REPYGKPVD  215 (351)
T ss_dssp             HHHHHHHHHHHHTTEECSCCSGGGEEECSSSTTCCEEECCCTTCEECCTTSCBCCCCCSCGGGCCHHHHT-TCCBCTHHH
T ss_pred             HHHHHHHHHHHHCCceeccCChHHeEEecCCCCCcEEEecCcceeEecCCCeeecCCcCCcCccCHHHHc-CCCCCchHh
Confidence            999999999999999999999999999862  235999999999765432         36799999554 456899999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          307 MRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       307 IWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      ||||||++|+|++|.+||....             ..+.   ..+......   .....+..+++++++||.+||+.||+
T Consensus       216 iwslG~il~~ll~g~~pf~~~~-------------~~~~---~~i~~~~~~---~~~~~~~~~s~~~~~li~~~L~~dP~  276 (351)
T 3c0i_A          216 VWGCGVILFILLSGCLPFYGTK-------------ERLF---EGIIKGKYK---MNPRQWSHISESAKDLVRRMLMLDPA  276 (351)
T ss_dssp             HHHHHHHHHHHHHSSCSSCSSH-------------HHHH---HHHHHTCCC---CCHHHHTTSCHHHHHHHHHHTCSSTT
T ss_pred             hHHHHHHHHHHHHCCCCCCCcH-------------HHHH---HHHHcCCCC---CCccccccCCHHHHHHHHHHCCCChh
Confidence            9999999999999999995321             1111   111111111   01122356789999999999999999


Q ss_pred             CCCCHHHHHcCCCCCCCC
Q 005958          387 KRISCLDALRHPFLCGPR  404 (667)
Q Consensus       387 kRpSa~elL~HPwf~~~~  404 (667)
                      +|||+.|+|+||||++..
T Consensus       277 ~R~s~~e~l~hp~~~~~~  294 (351)
T 3c0i_A          277 ERITVYEALNHPWLKERD  294 (351)
T ss_dssp             TSCCHHHHHTSHHHHTHH
T ss_pred             HCcCHHHHhcChhhcCCc
Confidence            999999999999998743

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.8e-44  Score=389.83  Aligned_cols=273  Identities=21%  Similarity=0.294  Sum_probs=210.8

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      .++|++++.||+|+||    .||+|.+..     +++.||||++...    ...+.+.+|+.+|+.++      ||||++
T Consensus        24 ~~~y~~~~~lG~G~~g----~V~~a~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~------hpnIv~   88 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYG----AVCSAVDGR-----TGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMR------HENVIG   88 (367)
T ss_dssp             BSSEEEEEEC----------CEEEEEETT-----TCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCC------BTTBCC
T ss_pred             cceEEEeEEeeecCCe----EEEEEEECC-----CCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCC------CcCCCC
Confidence            4789999999999999    999999987     8999999998642    23356789999999995      999999


Q ss_pred             EEEEEEecc-cCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          161 VHGYVSSHT-TSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       161 l~~~~~~~~-~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      +++++.... ......+|+||| |+ +++|.+++...          .+++                    ..++.++.|
T Consensus        89 l~~~~~~~~~~~~~~~~~lv~e-~~-~~~L~~~~~~~----------~l~~--------------------~~~~~~~~q  136 (367)
T 1cm8_A           89 LLDVFTPDETLDDFTDFYLVMP-FM-GTDLGKLMKHE----------KLGE--------------------DRIQFLVYQ  136 (367)
T ss_dssp             CSEEECSCSSTTTCCCCEEEEE-CC-SEEHHHHHHHC----------CCCH--------------------HHHHHHHHH
T ss_pred             ceeeEecCCccccCceEEEEEe-cC-CCCHHHHHhcC----------CCCH--------------------HHHHHHHHH
Confidence            999997331 112356799999 99 45999999863          3554                    457889999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      |+.||.|||++||+||||||+|||++. ++.+||+|||+|+.....      .+.|+|||++.+...|+.++||||+||+
T Consensus       137 i~~~L~~LH~~~ivH~Dlkp~NIll~~-~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~i  215 (367)
T 1cm8_A          137 MLKGLRYIHAAGIIHRDLKPGNLAVNE-DCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCI  215 (367)
T ss_dssp             HHHHHHHHHHTTEECCCCCGGGEEECT-TCCEEECCCTTCEECCSSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHCCccccCcCHHHEEEcC-CCCEEEEeeecccccccccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHH
Confidence            999999999999999999999999998 899999999999876433      3679999987776789999999999999


Q ss_pred             HHHHHhCCCCChh---hhhhhhhhhccCCChhHHHHHH-----HHHhccCCCCCCCCc-ccccCCCHHHHHHHHHhhhcC
Q 005958          314 MAKMVLRELMDPL---IFTKFKSFLTKGIDPSCLREFL-----LQVLNRNSSSGNTGF-QILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       314 LyemltG~~PF~~---~~~~~~~~~~~g~~~~~l~~~~-----~~~~~~~~~~~~~~~-~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      +|||++|++||.+   ..+...+....|.++..+...+     ...+...+......+ ...+..++++++||.+||+.|
T Consensus       216 l~ell~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~d  295 (367)
T 1cm8_A          216 MAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLD  295 (367)
T ss_dssp             HHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSS
T ss_pred             HHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCC
Confidence            9999999999984   3445555556676665433211     111111111111122 345678999999999999999


Q ss_pred             cCCCCCHHHHHcCCCCCCCCC
Q 005958          385 PSKRISCLDALRHPFLCGPRW  405 (667)
Q Consensus       385 P~kRpSa~elL~HPwf~~~~~  405 (667)
                      |++|||++|+|+||||+....
T Consensus       296 P~~R~t~~e~l~hp~f~~~~~  316 (367)
T 1cm8_A          296 AEQRVTAGEALAHPYFESLHD  316 (367)
T ss_dssp             TTTSCCHHHHHHSGGGTTTC-
T ss_pred             hhHCCCHHHHhcChHHHhhcC
Confidence            999999999999999998764

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=8.3e-45  Score=389.14  Aligned_cols=251  Identities=18%  Similarity=0.221  Sum_probs=203.6

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGY  164 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~  164 (667)
                      .++|++.+.||+|+||    +||+|.++.     +++.||||++.+...  ...+|++++.++.     .||||++++++
T Consensus        21 ~~~y~~~~~lG~G~~g----~V~~~~~~~-----~~~~~avK~~~~~~~--~~~~E~~~l~~~~-----~hp~iv~~~~~   84 (342)
T 2qr7_A           21 TDGYEVKEDIGVGSYS----VCKRCIHKA-----TNMEFAVKIIDKSKR--DPTEEIEILLRYG-----QHPNIITLKDV   84 (342)
T ss_dssp             HHHEEEEEEEEECSSE----EEEEEEETT-----TTEEEEEEEEETTTC--CCHHHHHHHHHHT-----TSTTBCCEEEE
T ss_pred             cccEEEEEEEeeCCCE----EEEEEEECC-----CCCEEEEEEEEcccC--ChHHHHHHHHHhc-----CCCCcCeEEEE
Confidence            4789999999999999    999999998     899999999976432  3467999999985     69999999999


Q ss_pred             EEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHH
Q 005958          165 VSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGV  244 (667)
Q Consensus       165 ~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL  244 (667)
                      +.     +.+.+|+||| |+++|+|.+++...+         .++|                    ..++.++.||+.||
T Consensus        85 ~~-----~~~~~~lv~E-~~~gg~L~~~i~~~~---------~~~~--------------------~~~~~~~~qi~~al  129 (342)
T 2qr7_A           85 YD-----DGKYVYVVTE-LMKGGELLDKILRQK---------FFSE--------------------REASAVLFTITKTV  129 (342)
T ss_dssp             EE-----CSSEEEEEEC-CCCSCBHHHHHHTCT---------TCCH--------------------HHHHHHHHHHHHHH
T ss_pred             EE-----cCCEEEEEEe-CCCCCcHHHHHHHcC---------CCCH--------------------HHHHHHHHHHHHHH
Confidence            99     8889999999 999999999998754         4565                    45678999999999


Q ss_pred             HHHHHCCCcccCCCCCcEEEcCCCC---eEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHH
Q 005958          245 NYLHSHGLAHTELRLENVHISPVDR---HIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       245 ~yLHs~gIvHrDLKPeNILl~~~~~---~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      .|||++||+||||||+|||+...++   .+||+|||++......         .+.|+|||++. ...|+.++|||||||
T Consensus       130 ~~lH~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwslG~  208 (342)
T 2qr7_A          130 EYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLE-RQGYDAACDIWSLGV  208 (342)
T ss_dssp             HHHHHTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTTCCBCCSSCCSSCCCHHHHH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCCCceeccCCCccccCHHHhc-CCCCCCccCeeeHhH
Confidence            9999999999999999999965333   5999999999865432         37899999654 445899999999999


Q ss_pred             HHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHH
Q 005958          313 MMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCL  392 (667)
Q Consensus       313 iLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~  392 (667)
                      ++|||++|.+||....         .....   +.+..+.......   ....+..+++++++||.+||..||++|||+.
T Consensus       209 il~ell~g~~Pf~~~~---------~~~~~---~~~~~i~~~~~~~---~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~  273 (342)
T 2qr7_A          209 LLYTMLTGYTPFANGP---------DDTPE---EILARIGSGKFSL---SGGYWNSVSDTAKDLVSKMLHVDPHQRLTAA  273 (342)
T ss_dssp             HHHHHHHSSCSSCSST---------TSCHH---HHHHHHHHCCCCC---CSTTTTTSCHHHHHHHHHHTCSSTTTSCCHH
T ss_pred             HHHHHhcCCCCCCCCC---------cCCHH---HHHHHHccCCccc---CccccccCCHHHHHHHHHHCCCChhHCcCHH
Confidence            9999999999995210         11222   2222222222111   1123457899999999999999999999999


Q ss_pred             HHHcCCCCCC
Q 005958          393 DALRHPFLCG  402 (667)
Q Consensus       393 elL~HPwf~~  402 (667)
                      |+|+||||.+
T Consensus       274 ~il~hp~~~~  283 (342)
T 2qr7_A          274 LVLRHPWIVH  283 (342)
T ss_dssp             HHTTSHHHHT
T ss_pred             HHhcCCeecC
Confidence            9999999965

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=8.2e-45  Score=402.26  Aligned_cols=252  Identities=21%  Similarity=0.273  Sum_probs=202.2

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMY  154 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~  154 (667)
                      ...+.+++|++++.||+|+||    .||+|.+..     +++.||||++....     ......+|+.+++.+      .
T Consensus       142 ~~~~~~~~y~~~~~lG~G~~g----~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l------~  206 (446)
T 4ejn_A          142 KHRVTMNEFEYLKLLGKGTFG----KVILVKEKA-----TGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNS------R  206 (446)
T ss_dssp             --CCCGGGEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEEHHHHC-------------CCCCC------S
T ss_pred             ccCCChHHcEEeEEEeeCcCE----EEEEEEEcC-----CCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhC------C
Confidence            345667899999999999999    999999998     89999999997532     123456788888877      5


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      ||||+++++++.     ..+.+||||| |+++|+|.+++...+         .+++                    ..++
T Consensus       207 h~~iv~l~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~  251 (446)
T 4ejn_A          207 HPFLTALKYSFQ-----THDRLCFVME-YANGGELFFHLSRER---------VFSE--------------------DRAR  251 (446)
T ss_dssp             CTTSCCEEEEEE-----ETTEEEEEEC-CCSSCBHHHHHHHHS---------CCCH--------------------HHHH
T ss_pred             CCeEeeEEEEEe-----eCCEEEEEEe-eCCCCcHHHHHHhcC---------CCCH--------------------HHHH
Confidence            999999999998     7789999999 999999999998754         4554                    4578


Q ss_pred             HHHHHHHHHHHHHHH-CCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCch
Q 005958          235 LLMRDLLIGVNYLHS-HGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs-~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~k  304 (667)
                      .++.||+.||+|||+ +||+||||||+|||++. ++.+||+|||+|+....         +.+.|+|||++. ...|+.+
T Consensus       252 ~~~~qi~~aL~~LH~~~giiHrDlkp~NIll~~-~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~  329 (446)
T 4ejn_A          252 FYGAEIVSALDYLHSEKNVVYRDLKLENLMLDK-DGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLE-DNDYGRA  329 (446)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCCCCGGGEEECS-SSCEEECCCCCCCTTCC-----CCSSSCGGGCCHHHHH-TSCCCTH
T ss_pred             HHHHHHHHHHHHHhhcCCEEECCCCHHHEEECC-CCCEEEccCCCceeccCCCcccccccCCccccCHhhcC-CCCCCCc
Confidence            899999999999998 99999999999999998 89999999999975432         236799999654 4569999


Q ss_pred             hhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          305 FDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       305 sDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      +|||||||++|||++|++||.            +.....+...+   ....       ...+..+++++++||.+||++|
T Consensus       330 ~DiwslG~il~ell~g~~Pf~------------~~~~~~~~~~i---~~~~-------~~~p~~~~~~~~~li~~~L~~d  387 (446)
T 4ejn_A          330 VDWWGLGVVMYEMMCGRLPFY------------NQDHEKLFELI---LMEE-------IRFPRTLGPEAKSLLSGLLKKD  387 (446)
T ss_dssp             HHHHHHHHHHHHHHHSSCSSC------------CSSHHHHHHHH---HHCC-------CCCCTTSCHHHHHHHHHHTCSS
T ss_pred             cchhhhHHHHHHHhhCCCCCC------------CCCHHHHHHHH---HhCC-------CCCCccCCHHHHHHHHHHcccC
Confidence            999999999999999999985            22233222222   2111       2234567899999999999999


Q ss_pred             cCCCC-----CHHHHHcCCCCCCCCC
Q 005958          385 PSKRI-----SCLDALRHPFLCGPRW  405 (667)
Q Consensus       385 P~kRp-----Sa~elL~HPwf~~~~~  405 (667)
                      |++||     +++|+|+||||++..|
T Consensus       388 P~~R~~~~~~t~~ell~hp~f~~~~~  413 (446)
T 4ejn_A          388 PKQRLGGGSEDAKEIMQHRFFAGIVW  413 (446)
T ss_dssp             TTTSTTCSTTTHHHHHTSGGGTTCCH
T ss_pred             HHHhCCCCCCCHHHHHhCccccCCCH
Confidence            99999     9999999999999875

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=1.7e-44  Score=379.22  Aligned_cols=268  Identities=15%  Similarity=0.158  Sum_probs=202.1

Q ss_pred             cCCeEEE-eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           85 MGDFKIL-DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        85 ~~~y~i~-~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      .+.|++. +.||+|+||    .||+|++..     +++.||||++...  .....+.+|++++.++.     .||||+++
T Consensus        11 ~~~y~i~~~~lg~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~-----~h~~i~~~   76 (316)
T 2ac3_A           11 EDVYQLQEDVLGEGAHA----RVQTCINLI-----TSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQ-----GHRNVLEL   76 (316)
T ss_dssp             TTSCEECCCCCCCCSSE----EEEEEECSS-----SCCEEEEEEEECCSSCCHHHHHHHHHHHHHTC-----CCTTBCCE
T ss_pred             ceeEEecCceecCCceE----EEEEEEEcC-----CCcEEEEEEEeeCcchhHHHHHHHHHHHHHhc-----CCCCeeeE
Confidence            3789985 789999999    999999987     7999999999753  23466789999999964     69999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     +.+.+|+||| |+++|+|.+++...+         .+++                    ..++.++.||+
T Consensus        77 ~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~~i~~qi~  121 (316)
T 2ac3_A           77 IEFFE-----EEDRFYLVFE-KMRGGSILSHIHKRR---------HFNE--------------------LEASVVVQDVA  121 (316)
T ss_dssp             EEEEE-----ETTEEEEEEE-CCTTCBHHHHHHHHS---------SCCH--------------------HHHHHHHHHHH
T ss_pred             EEEEe-----eCCEEEEEEE-cCCCCcHHHHHhccC---------CCCH--------------------HHHHHHHHHHH
Confidence            99998     6789999999 999999999998754         4554                    45678999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCe---EEEeeecccccccC----------------CCCCCCCcccccC----C
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRH---IKVGILGNAADFYE----------------DGPNNSSPDSNMD----R  298 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~---vKL~DFGlA~~~~~----------------~~~~Y~APE~l~~----~  298 (667)
                      .||+|||++||+||||||+|||++. ++.   +||+|||++.....                +.+.|+|||++..    .
T Consensus       122 ~~l~~lH~~~ivH~dlkp~Nil~~~-~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  200 (316)
T 2ac3_A          122 SALDFLHNKGIAHRDLKPENILCEH-PNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEA  200 (316)
T ss_dssp             HHHHHHHHTTCCCCCCCGGGEEESC-SSSSCSEEECCTTCCC-------------------CCSGGGCCHHHHHHTSHHH
T ss_pred             HHHHHHHhCCceeCCCCHHHEEEcc-CCCcCceEEEEccCccccccCCccccccccccccccCCcCccChHHhhcccccc
Confidence            9999999999999999999999997 444   99999999875431                3467999997653    2


Q ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHH
Q 005958          299 RQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLS  378 (667)
Q Consensus       299 ~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~  378 (667)
                      ..|+.++|||||||++|||++|++||.........+......+.........+.......   .......+++++++||.
T Consensus       201 ~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~li~  277 (316)
T 2ac3_A          201 SIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKYEF---PDKDWAHISCAAKDLIS  277 (316)
T ss_dssp             HHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHHHHHHHHHHCCCCC---CHHHHTTSCHHHHHHHH
T ss_pred             cCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHHHHHHHHHhccCccc---CchhcccCCHHHHHHHH
Confidence            458899999999999999999999996422111000000011111122222222221110   11123467899999999


Q ss_pred             HhhhcCcCCCCCHHHHHcCCCCCCCCC
Q 005958          379 LLLATKPSKRISCLDALRHPFLCGPRW  405 (667)
Q Consensus       379 ~~L~~DP~kRpSa~elL~HPwf~~~~~  405 (667)
                      +||+.||++|||++|+|+||||++..+
T Consensus       278 ~~L~~dP~~Rps~~e~l~hp~~~~~~~  304 (316)
T 2ac3_A          278 KLLVRDAKQRLSAAQVLQHPWVQGCAP  304 (316)
T ss_dssp             HHSCSSTTTSCCHHHHHHSTTCC----
T ss_pred             HHhhCChhhCCCHHHHhcChhhcCCCC
Confidence            999999999999999999999998654

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=2.5e-44  Score=379.00  Aligned_cols=252  Identities=17%  Similarity=0.238  Sum_probs=199.0

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      +++|++++.||+|+||    .||+|+++.     +++.||||++...   ...+.+.+|+.+|++++      ||||+++
T Consensus         5 ~~~y~~~~~lG~G~~g----~V~~a~~~~-----~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~------hpniv~~   69 (332)
T 3qd2_B            5 LTDFEPIQCMGRGGFG----VVFEAKNKV-----DDCNYAIKRIRLPNRELAREKVMREVKALAKLE------HPGIVRY   69 (332)
T ss_dssp             HHHEEEEEEEECC-CS----EEEEEEETT-----TCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCC------CTTBCCE
T ss_pred             hhcCceeeEecCCCCe----EEEEEEEcC-----CCcEEEEEEeecCCchhHHHHHHHHHHHHHhCC------CCCEeeE
Confidence            4789999999999999    999999997     7999999999742   23466789999999994      9999999


Q ss_pred             EEEEEeccc----------------------------------------------------CCCCeEEEEEccCCCCCCH
Q 005958          162 HGYVSSHTT----------------------------------------------------SGRSLFTLVHGQYHGSFSL  189 (667)
Q Consensus       162 ~~~~~~~~~----------------------------------------------------~~~~~~~lVmE~~~~~GsL  189 (667)
                      ++++.....                                                    .....+++||| |+++|+|
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e-~~~~~~L  148 (332)
T 3qd2_B           70 FNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQ-LCRKENL  148 (332)
T ss_dssp             EEEEEECCSCHHHHHHHC--------------------------------------------CCCEEEEEEE-CCCSSCH
T ss_pred             EEEEEEeccchhhhhhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEE-ecCCCCH
Confidence            999864311                                                    12335899999 9999999


Q ss_pred             HHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCC
Q 005958          190 RHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDR  269 (667)
Q Consensus       190 ~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~  269 (667)
                      .+++........      .+                    ...++.++.||+.||.|||++||+||||||+|||++. ++
T Consensus       149 ~~~~~~~~~~~~------~~--------------------~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~-~~  201 (332)
T 3qd2_B          149 KDWMNRRCSLED------RE--------------------HGVCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTM-DD  201 (332)
T ss_dssp             HHHHHTCCSGGG------SC--------------------HHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECT-TC
T ss_pred             HHHHhcccCccc------hh--------------------hHHHHHHHHHHHHHHHHHHhCCeeecCCCcccEEEeC-CC
Confidence            999987542111      11                    2457889999999999999999999999999999998 89


Q ss_pred             eEEEeeecccccccC---------------------CCCCCCCcccccCCCCCCchhhHHHHHHHHHHHHhCCCCChhhh
Q 005958          270 HIKVGILGNAADFYE---------------------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIF  328 (667)
Q Consensus       270 ~vKL~DFGlA~~~~~---------------------~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG~~PF~~~~  328 (667)
                      .+||+|||++.....                     +.+.|+|||++. ...|+.++|||||||++|||++|..|+....
T Consensus       202 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~Di~slG~il~el~~~~~~~~~~~  280 (332)
T 3qd2_B          202 VVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIH-GNNYSHKVDIFSLGLILFELLYSFSTQMERV  280 (332)
T ss_dssp             CEEECCCTTCEECSCC--------------CCCSCC-CGGGSCHHHHH-CCCCCTHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred             CEEEeecCcccccccchhhccccccccccccccccCCCcCccChHHhc-CCCCcchhhHHHHHHHHHHHHHcCCChhHHH
Confidence            999999999986654                     236799999654 4568999999999999999999987764322


Q ss_pred             hhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCC
Q 005958          329 TKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGP  403 (667)
Q Consensus       329 ~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~  403 (667)
                      .....                 ......      .......++++++||.+||+.||++|||++|+|+||||+++
T Consensus       281 ~~~~~-----------------~~~~~~------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~~~~f~~~  332 (332)
T 3qd2_B          281 RIITD-----------------VRNLKF------PLLFTQKYPQEHMMVQDMLSPSPTERPEATDIIENAIFENL  332 (332)
T ss_dssp             HHHHH-----------------HHTTCC------CHHHHHHCHHHHHHHHHHHCSSGGGSCCHHHHHHSTTCCCC
T ss_pred             HHHHH-----------------hhccCC------CcccccCChhHHHHHHHHccCCCCcCCCHHHHhhchhhhcC
Confidence            21111                 111000      01122345788999999999999999999999999999863

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=6.5e-44  Score=381.37  Aligned_cols=266  Identities=20%  Similarity=0.253  Sum_probs=206.4

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      .+++|++++.||+|+||    +||+|++..     +++.||||++....    ....+.+|+.+++.++      ||||+
T Consensus        15 ~~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~------h~~iv   79 (351)
T 3mi9_A           15 EVSKYEKLAKIGQGTFG----EVFKARHRK-----TGQKVALKKVLMENEKEGFPITALREIKILQLLK------HENVV   79 (351)
T ss_dssp             BGGGEEEEEECSSCSTT----SEEEEEETT-----TCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCC------CTTBC
T ss_pred             cccceeEEEEEecCCCc----EEEEEEECC-----CCCEEEEEEEecccccccchHHHHHHHHHHHhcc------CCCcc
Confidence            45899999999999999    999999987     79999999986532    2346689999999995      99999


Q ss_pred             EEEEEEEeccc---CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          160 QVHGYVSSHTT---SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       160 ~l~~~~~~~~~---~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ++++++.....   ...+.+|+||| |+++ +|.+.+....        ..+++                    ..++.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~lv~e-~~~~-~l~~~l~~~~--------~~~~~--------------------~~~~~i  129 (351)
T 3mi9_A           80 NLIEICRTKASPYNRCKGSIYLVFD-FCEH-DLAGLLSNVL--------VKFTL--------------------SEIKRV  129 (351)
T ss_dssp             CEEEEEEEC--------CEEEEEEE-CCSE-EHHHHHHCTT--------SCCCH--------------------HHHHHH
T ss_pred             cHhheeeccccccccCCceEEEEEe-ccCC-CHHHHHhhcc--------CCCCH--------------------HHHHHH
Confidence            99999984311   11568999999 9997 8988887642        13444                    567889


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-------------CCCCCCCcccccCCCCCCc
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-------------DGPNNSSPDSNMDRRQMMI  303 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-------------~~~~Y~APE~l~~~~~ys~  303 (667)
                      +.||+.||.|||++||+||||||+|||++. ++.+||+|||+|..+..             +.+.|+|||++.+...|+.
T Consensus       130 ~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  208 (351)
T 3mi9_A          130 MQMLLNGLYYIHRNKILHRDMKAANVLITR-DGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGP  208 (351)
T ss_dssp             HHHHHHHHHHHHHTTEECCCCSGGGEEECT-TSCEEECCCTTCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCT
T ss_pred             HHHHHHHHHHHHHCCeeCCCCCHHHEEEcC-CCCEEEccchhcccccccccccccccCCcccccCccCchhhcCCCCCCc
Confidence            999999999999999999999999999998 89999999999976542             1256999998777777999


Q ss_pred             hhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCccc---c--------------
Q 005958          304 AFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQI---L--------------  366 (667)
Q Consensus       304 ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~---~--------------  366 (667)
                      ++|||||||++|+|++|.+||..            .........+........+........   .              
T Consensus       209 ~~DiwslG~il~ell~g~~pf~~------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (351)
T 3mi9_A          209 PIDLWGAGCIMAEMWTRSPIMQG------------NTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVK  276 (351)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSCCC------------SSHHHHHHHHHHHHCCCCTTTSTTGGGCGGGTSSCCCSSCCCCHH
T ss_pred             HhHHHHHHHHHHHHHhCCCCCCC------------CChHHHHHHHHHHhCCCChhhccccccchhhcccccccccccCHH
Confidence            99999999999999999999962            222222222222222222211111100   0              


Q ss_pred             -----cCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCCCCC
Q 005958          367 -----DRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPRWRV  407 (667)
Q Consensus       367 -----~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~~~~  407 (667)
                           ...++++++||.+||++||++|||++|+|+||||+....+.
T Consensus       277 ~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~~  322 (351)
T 3mi9_A          277 DRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDPMPS  322 (351)
T ss_dssp             HHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGSSSCCC
T ss_pred             HHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhCCCCcCCCCCcc
Confidence                 01367899999999999999999999999999998866433

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=6e-44  Score=393.95  Aligned_cols=277  Identities=17%  Similarity=0.189  Sum_probs=214.6

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ....+|++++.||+|+||    +||+|.+..     +++.||||++.... ..+...+|+.+++.+++....+|+||+++
T Consensus        94 ~~~~ry~~~~~LG~G~fg----~V~~a~~~~-----~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~  164 (429)
T 3kvw_A           94 HVAYRYEVLKVIGKGSFG----QVVKAYDHK-----VHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHM  164 (429)
T ss_dssp             EETTTEEEEEEEEESSSE----EEEEEEETT-----TTEEEEEEEECSCHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCE
T ss_pred             cccCcEEEEEEcccCccE----EEEEEEECC-----CCcEEEEEEECCccchHHHHHHHHHHHHHHhhccccCCcCEEEE
Confidence            345789999999999999    999999998     79999999997643 34567899999999987777789999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     ..+.+++||| |+++ +|.+++.....       ..+++                    ..++.++.||+
T Consensus       165 ~~~~~-----~~~~~~lv~e-~~~~-~L~~~l~~~~~-------~~~~~--------------------~~~~~i~~qi~  210 (429)
T 3kvw_A          165 LENFT-----FRNHICMTFE-LLSM-NLYELIKKNKF-------QGFSL--------------------PLVRKFAHSIL  210 (429)
T ss_dssp             EEEEE-----ETTEEEEEEC-CCCC-BHHHHHHHTTT-------CCCCH--------------------HHHHHHHHHHH
T ss_pred             Eeecc-----cCCeEEEEEe-ccCC-CHHHHHHhccC-------CCCCH--------------------HHHHHHHHHHH
Confidence            99998     7789999999 9986 99999987531       12443                    56788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCe--EEEeeecccccccCC------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRH--IKVGILGNAADFYED------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~--vKL~DFGlA~~~~~~------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      .||+|||++||+||||||+|||++. ++.  +||+|||+|......      .+.|+|||++.+ ..|+.++|||||||+
T Consensus       211 ~aL~~LH~~~ivHrDlKp~NILl~~-~~~~~vkL~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~i  288 (429)
T 3kvw_A          211 QCLDALHKNRIIHCDLKPENILLKQ-QGRSGIKVIDFGSSCYEHQRVYTYIQSRFYRAPEVILG-ARYGMPIDMWSLGCI  288 (429)
T ss_dssp             HHHHHHHHHTEECSCCSGGGEEESS-TTSCCEEECCCTTCEETTCCCCSSCSCGGGCCHHHHHT-BCCCTHHHHHHHHHH
T ss_pred             HHHHHHHHCCeecCCCCHHHeEEcc-CCCcceEEeecccceecCCcccccCCCCCccChHHHhC-CCCCchHHHHhHHHH
Confidence            9999999999999999999999998 665  999999999765433      367999996655 458999999999999


Q ss_pred             HHHHHhCCCCChh---hhhhhhhhhccCCChhHHHHHHHHHhccCCCCC-------------------------------
Q 005958          314 MAKMVLRELMDPL---IFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSG-------------------------------  359 (667)
Q Consensus       314 LyemltG~~PF~~---~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~-------------------------------  359 (667)
                      +|||++|.+||+.   ...+..+....|.++..+.+.............                               
T Consensus       289 l~elltG~~pf~~~~~~~~l~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (429)
T 3kvw_A          289 LAELLTGYPLLPGEDEGDQLACMIELLGMPSQKLLDASKRAKNFVSSKGYPRYCTVTTLSDGSVVLNGGRSRRGKLRGPP  368 (429)
T ss_dssp             HHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTBTTHHHHBCTTSCBTTSCEECCCC--CEECCEECTTCCEECST
T ss_pred             HHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHhhhhhhhccCCCCCcccccccccccccccccccccchhhccCCc
Confidence            9999999999973   233444445556555544332111000000000                               


Q ss_pred             -CCC--cccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          360 -NTG--FQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       360 -~~~--~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                       ...  .......++++++||.+||++||++|||++|+|+||||+...
T Consensus       369 ~~~~~~~~l~~~~~~~~~dli~~~L~~dP~~Rpta~e~L~Hpw~~~~~  416 (429)
T 3kvw_A          369 ESREWGNALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPWLRRRL  416 (429)
T ss_dssp             TCSCHHHHTTTCCCHHHHHHHHHHTCSSTTTSCCHHHHHTSTTTC---
T ss_pred             cchhhHhhccccchHHHHHHHHHHCCCChhhCCCHHHHhCChhhccCC
Confidence             000  001123478999999999999999999999999999998754

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=6.9e-44  Score=399.10  Aligned_cols=253  Identities=17%  Similarity=0.208  Sum_probs=208.9

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      ..++|++.+.||+|+||    +||+|++..     +++.||||++...    .....+.+|+++|++++      ||||+
T Consensus        20 ~~~~y~~~~~lG~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~------hpniv   84 (486)
T 3mwu_A           20 FAERYNIVCMLGKGSFG----EVLKCKDRI-----TQQEYAVKVINKASAKNKDTSTILREVELLKKLD------HPNIM   84 (486)
T ss_dssp             HHHHEEEEEEEECCSSS----EEEEEEETT-----TCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCC------CTTBC
T ss_pred             hhcceEEeEEEeecCCE----EEEEEEECC-----CCCEEEEEEEecccccchHHHHHHHHHHHHHhCC------CCCcC
Confidence            34789999999999999    999999997     7999999999753    23456789999999994      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++.     +.+.+|+||| |+.+|+|.+++...+         .+++                    ..++.++.|
T Consensus        85 ~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~~---------~~~~--------------------~~~~~i~~q  129 (486)
T 3mwu_A           85 KLFEILE-----DSSSFYIVGE-LYTGGELFDEIIKRK---------RFSE--------------------HDAARIIKQ  129 (486)
T ss_dssp             CEEEEEE-----CSSEEEEEEC-CCCSCBHHHHHHHHS---------SCCH--------------------HHHHHHHHH
T ss_pred             eEEEEEE-----cCCEEEEEEE-cCCCCcHHHHHHhcC---------CCCH--------------------HHHHHHHHH
Confidence            9999999     7889999999 999999999998754         4555                    457789999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcC--CCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISP--VDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRC  309 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~--~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWS  309 (667)
                      |+.||.|||++||+||||||+|||++.  .++.+||+|||+|..+...        .+.|+|||++.+  .|+.++||||
T Consensus       130 i~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~Diws  207 (486)
T 3mwu_A          130 VFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRG--TYDEKCDVWS  207 (486)
T ss_dssp             HHHHHHHHHHTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC----CCTTGGGGCCGGGGGS--CCCHHHHHHH
T ss_pred             HHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEEECCcCeECCCCCccCCCcCCCCCCCHHHhCC--CCCchhhHHH
Confidence            999999999999999999999999964  2568999999999865433        378999996643  4999999999


Q ss_pred             HHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          310 VGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       310 LGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      |||++|+|++|.+||.            +.....+...+   ......   ...+.+..+++++++||.+||++||++||
T Consensus       208 lG~il~~ll~g~~pf~------------~~~~~~~~~~i---~~~~~~---~~~~~~~~~s~~~~~li~~~L~~dp~~R~  269 (486)
T 3mwu_A          208 AGVILYILLSGTPPFY------------GKNEYDILKRV---ETGKYA---FDLPQWRTISDDAKDLIRKMLTFHPSLRI  269 (486)
T ss_dssp             HHHHHHHHHHSSCSSC------------CSSHHHHHHHH---HHTCCC---SCSGGGGGSCHHHHHHHHHHTCSSTTTSC
T ss_pred             HHHHHHHHHhCCCCCC------------CCCHHHHHHHH---HhCCCC---CCCcccCCCCHHHHHHHHHHcCCChhhCc
Confidence            9999999999999985            22332222222   221111   12344567899999999999999999999


Q ss_pred             CHHHHHcCCCCCCCCCC
Q 005958          390 SCLDALRHPFLCGPRWR  406 (667)
Q Consensus       390 Sa~elL~HPwf~~~~~~  406 (667)
                      |+.|+|+||||+.....
T Consensus       270 t~~~~l~hp~~~~~~~~  286 (486)
T 3mwu_A          270 TATQCLEHPWIQKYSSE  286 (486)
T ss_dssp             CHHHHHHCHHHHHTCCC
T ss_pred             CHHHHhcCHhhccCccc
Confidence            99999999999876543

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=9.7e-44  Score=380.12  Aligned_cols=261  Identities=21%  Similarity=0.280  Sum_probs=202.0

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-------HHHHHHHHHHHHHHhhccCCCCC
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-------QRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-------~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      ..++|++++.||+|+||    .||+|++..     +++.||||++.....       .+.+.+|+.+++.++      ||
T Consensus         8 ~~~~y~~~~~lg~G~~g----~Vy~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~------h~   72 (346)
T 1ua2_A            8 RAKRYEKLDFLGEGQFA----TVYKARDKN-----TNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELS------HP   72 (346)
T ss_dssp             -----CEEEEEEEETTE----EEEEEECSS-----CCSEEEEEEC------------CTHHHHHHHHHHHCC------CT
T ss_pred             HhcccEEEeEEeecCCE----EEEEEEECC-----CCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCC------CC
Confidence            45889999999999999    999999987     799999999875221       235679999999994      99


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++.     ..+..++||| |+++ +|.+++....        ..+++                    ..++.+
T Consensus        73 ~iv~~~~~~~-----~~~~~~lv~e-~~~~-~l~~~~~~~~--------~~~~~--------------------~~~~~~  117 (346)
T 1ua2_A           73 NIIGLLDAFG-----HKSNISLVFD-FMET-DLEVIIKDNS--------LVLTP--------------------SHIKAY  117 (346)
T ss_dssp             TBCCEEEEEC-----CTTCCEEEEE-CCSE-EHHHHHTTCC--------SSCCS--------------------SHHHHH
T ss_pred             CCCeEEEEEe-----eCCceEEEEE-cCCC-CHHHHHHhcC--------cCCCH--------------------HHHHHH
Confidence            9999999998     7788999999 9998 9999987643        13444                    357889


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhH
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDI  307 (667)
                      +.||+.||.|||++||+||||||+|||++. ++.+||+|||++..+...         .+.|+|||++.+...|+.++||
T Consensus       118 ~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di  196 (346)
T 1ua2_A          118 MLMTLQGLEYLHQHWILHRDLKPNNLLLDE-NGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDM  196 (346)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCCCGGGEEECT-TCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTCSCCCHHHHH
T ss_pred             HHHHHHHHHHHHHCCEECCCCCHHHEEEcC-CCCEEEEecccceeccCCcccCCcccccccccCchHhhCCCCCCchhhh
Confidence            999999999999999999999999999998 899999999999865432         3679999977777779999999


Q ss_pred             HHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCC------------------cccccCC
Q 005958          308 RCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTG------------------FQILDRN  369 (667)
Q Consensus       308 WSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~------------------~~~~~~~  369 (667)
                      |||||++|||++|.+||.+.            ........+..............                  .......
T Consensus       197 wslG~il~ell~g~~~~~~~------------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (346)
T 1ua2_A          197 WAVGCILAELLLRVPFLPGD------------SDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAA  264 (346)
T ss_dssp             HHHHHHHHHHHHSSCSSCCS------------SHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTC
T ss_pred             HhHHHHHHHHHHCCCCCCCC------------CHHHHHHHHHHHcCCCChhhhhhhccCcccccccccCCCChHHhhccC
Confidence            99999999999999998632            11111111111111111100000                  0123567


Q ss_pred             CHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCCCCC
Q 005958          370 WGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPRWRV  407 (667)
Q Consensus       370 s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~~~~  407 (667)
                      ++++++||.+||+.||++|||++|+|+||||.+..++.
T Consensus       265 ~~~~~~li~~~L~~dP~~Rpt~~ell~h~~f~~~~~~~  302 (346)
T 1ua2_A          265 GDDLLDLIQGLFLFNPCARITATQALKMKYFSNRPGPT  302 (346)
T ss_dssp             CHHHHHHHHHHHCSSTTTSCCHHHHHTSGGGTSSSCCC
T ss_pred             CHHHHHHHHHHhccChhhCCCHHHHhcChhhhcCCCCC
Confidence            89999999999999999999999999999999876544

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=1.1e-43  Score=386.98  Aligned_cols=253  Identities=19%  Similarity=0.236  Sum_probs=207.1

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      .++|++.+.||+|+||    .||+|.+..     +++.||+|++...  .....+.+|+.+|+.++      ||||++++
T Consensus        50 ~~~y~i~~~LG~G~~g----~Vy~~~~~~-----~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~------hpnIv~~~  114 (387)
T 1kob_A           50 YDYYDILEELGSGAFG----VVHRCVEKA-----TGRVFVAKFINTPYPLDKYTVKNEISIMNQLH------HPKLINLH  114 (387)
T ss_dssp             GGTEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEECCSHHHHHHHHHHHHHHTTCC------STTBCCEE
T ss_pred             ccceEEEEEEecCCCE----EEEEEEECC-----CCCEEEEEEecccchhhHHHHHHHHHHHHhCC------CcCCCeEE
Confidence            4789999999999999    999999998     7999999999763  23446789999999994      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     +...+++||| |+++|+|.+++....        ..+++                    ..++.++.||+.
T Consensus       115 ~~~~-----~~~~~~lv~E-~~~gg~L~~~l~~~~--------~~l~~--------------------~~~~~i~~qi~~  160 (387)
T 1kob_A          115 DAFE-----DKYEMVLILE-FLSGGELFDRIAAED--------YKMSE--------------------AEVINYMRQACE  160 (387)
T ss_dssp             EEEE-----CSSEEEEEEE-CCCCCBHHHHTTCTT--------CCBCH--------------------HHHHHHHHHHHH
T ss_pred             EEEE-----eCCEEEEEEE-cCCCCcHHHHHHhhc--------CCCCH--------------------HHHHHHHHHHHH
Confidence            9999     7889999999 999999999987542        13554                    457889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcC-CCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISP-VDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~-~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      ||.|||++||+||||||+|||++. .++.+||+|||+|......        .+.|+|||++ ....++.++|||||||+
T Consensus       161 aL~~LH~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DiwSlG~i  239 (387)
T 1kob_A          161 GLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIV-DREPVGFYTDMWAIGVL  239 (387)
T ss_dssp             HHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCEEEECSSGGGCCHHHH-TTCCBCHHHHHHHHHHH
T ss_pred             HHHHHHhCCeeecccchHHeEEecCCCCceEEEecccceecCCCcceeeeccCCCccCchhc-cCCCCCCcccEeeHhHH
Confidence            999999999999999999999985 2578999999999876543        3779999955 45668999999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      +|||++|.+||..            .........+   ......   .....+..+++++++||.+||+.||++|||+.|
T Consensus       240 l~elltg~~Pf~~------------~~~~~~~~~i---~~~~~~---~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e  301 (387)
T 1kob_A          240 GYVLLSGLSPFAG------------EDDLETLQNV---KRCDWE---FDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHD  301 (387)
T ss_dssp             HHHHHHSCCSSCC------------SSHHHHHHHH---HHCCCC---CCSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHH
T ss_pred             HHHHHhCCCCCCC------------CCHHHHHHHH---HhCCCC---CCccccccCCHHHHHHHHHHcCCChhHCcCHHH
Confidence            9999999999852            2222222221   111111   111234567899999999999999999999999


Q ss_pred             HHcCCCCCCCCC
Q 005958          394 ALRHPFLCGPRW  405 (667)
Q Consensus       394 lL~HPwf~~~~~  405 (667)
                      +|+||||++...
T Consensus       302 ll~hp~~~~~~~  313 (387)
T 1kob_A          302 ALEHPWLKGDHS  313 (387)
T ss_dssp             HHTSTTTSSCCT
T ss_pred             HhhCccccCCcc
Confidence            999999998654

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=1.6e-43  Score=381.03  Aligned_cols=271  Identities=18%  Similarity=0.225  Sum_probs=212.7

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ++|++++.||+|+||    .||+|.+..     +++.||||++....   ..+.+.+|+++|++++      ||||++++
T Consensus        27 ~~y~~~~~lG~G~~g----~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~------h~niv~~~   91 (364)
T 3qyz_A           27 PRYTNLSYIGEGAYG----MVCSAYDNL-----NKVRVAIKKISPFEHQTYCQRTLREIKILLRFR------HENIIGIN   91 (364)
T ss_dssp             TTEEEEEEEEECSSE----EEEEEEETT-----TTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCC------CTTBCCCC
T ss_pred             ccEEEEEEeecCCCe----EEEEEEECC-----CCeEEEEEEeccccCcHHHHHHHHHHHHHHhcC------CCCCccce
Confidence            689999999999999    999999997     79999999997532   2356789999999995      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++...........|+||| |+++ +|.+++...          .+++                    ..++.++.||+.
T Consensus        92 ~~~~~~~~~~~~~~~iv~e-~~~~-~L~~~l~~~----------~~~~--------------------~~~~~i~~qi~~  139 (364)
T 3qyz_A           92 DIIRAPTIEQMKDVYIVQD-LMET-DLYKLLKTQ----------HLSN--------------------DHICYFLYQILR  139 (364)
T ss_dssp             EEECCSSTTTCCCEEEEEE-CCSE-EHHHHHHHC----------CCCH--------------------HHHHHHHHHHHH
T ss_pred             eEEecCCccccceEEEEEc-ccCc-CHHHHHHhC----------CCCH--------------------HHHHHHHHHHHH
Confidence            9997543334568999999 9997 999999763          3554                    457889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC------------CCCCCCCcccccCCCCCCchhhHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE------------DGPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~------------~~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      ||.|||++||+||||||+|||++. ++.+||+|||++.....            +.+.|+|||++.+...++.++|||||
T Consensus       140 aL~~LH~~~ivH~Dikp~NIl~~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Diwsl  218 (364)
T 3qyz_A          140 GLKYIHSANVLHRDLKPSNLLLNT-TCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSV  218 (364)
T ss_dssp             HHHHHHHTTEECCCCCGGGEEECT-TCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHH
T ss_pred             HHHHHHHCCeecCCCChHhEEECC-CCCEEEEeCcceEecCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHH
Confidence            999999999999999999999998 89999999999975542            23679999987777789999999999


Q ss_pred             HHHHHHHHhCCCCChhh---hhhhhhhhccCCChhHHHHHH-----HHHhccCCCCC-CCCcccccCCCHHHHHHHHHhh
Q 005958          311 GFMMAKMVLRELMDPLI---FTKFKSFLTKGIDPSCLREFL-----LQVLNRNSSSG-NTGFQILDRNWGAGWNLLSLLL  381 (667)
Q Consensus       311 GviLyemltG~~PF~~~---~~~~~~~~~~g~~~~~l~~~~-----~~~~~~~~~~~-~~~~~~~~~~s~e~~dLI~~~L  381 (667)
                      ||++|+|++|++||...   .....+....|.+........     .......+... .......+.+++++++||.+||
T Consensus       219 G~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L  298 (364)
T 3qyz_A          219 GCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKML  298 (364)
T ss_dssp             HHHHHHHHHSSCSSCCSSGGGHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHc
Confidence            99999999999999742   223333333444433211100     00111111111 1111234567899999999999


Q ss_pred             hcCcCCCCCHHHHHcCCCCCCCC
Q 005958          382 ATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       382 ~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      ++||++|||++|+|+||||++..
T Consensus       299 ~~dP~~R~t~~e~l~hp~~~~~~  321 (364)
T 3qyz_A          299 TFNPHKRIEVEQALAHPYLEQYY  321 (364)
T ss_dssp             CSSTTTSCCHHHHHTSGGGTTTC
T ss_pred             CCChhhCCCHHHHhcCcchhhcc
Confidence            99999999999999999999864

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=7.1e-44  Score=368.30  Aligned_cols=250  Identities=20%  Similarity=0.259  Sum_probs=207.4

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCC
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      ..+.+++|++.+.||+|+||    .||+|.+..     +++.||+|++....     ....+.+|+.+++.++      |
T Consensus         4 ~~~~~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~------h   68 (279)
T 3fdn_A            4 RQWALEDFEIGRPLGKGKFG----NVYLAREKQ-----SKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLR------H   68 (279)
T ss_dssp             CCCCGGGEEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCC------C
T ss_pred             ceeecccEEEeeEEecCCCe----EEEEEEEcc-----CCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCC------C
Confidence            45778999999999999999    999999998     78999999997532     2345688999999984      9


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      |||+++++++.     +.+..++||| |+++|+|.+++....         .+++                    ..++.
T Consensus        69 ~~i~~~~~~~~-----~~~~~~lv~e-~~~~~~l~~~l~~~~---------~~~~--------------------~~~~~  113 (279)
T 3fdn_A           69 PNILRLYGYFH-----DATRVYLILE-YAPLGTVYRELQKLS---------KFDE--------------------QRTAT  113 (279)
T ss_dssp             TTBCCEEEEEE-----CSSEEEEEEC-CCTTEEHHHHHHHHS---------SCCH--------------------HHHHH
T ss_pred             CCCcchhheEe-----cCCEEEEEEe-cCCCCcHHHHHHhcC---------CCCH--------------------HHHHH
Confidence            99999999998     7889999999 999999999998754         4554                    45778


Q ss_pred             HHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-------CCCCCCCcccccCCCCCCchhhHH
Q 005958          236 LMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-------DGPNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       236 i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-------~~~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      ++.||+.||.|||++||+||||||+|||++. ++.+||+|||++.....       +.+.|+|||.+ ....++.++|||
T Consensus       114 ~~~qi~~~l~~LH~~~i~H~dlkp~Nili~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~  191 (279)
T 3fdn_A          114 YITELANALSYCHSKRVIHRDIKPENLLLGS-AGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMI-EGRMHDEKVDLW  191 (279)
T ss_dssp             HHHHHHHHHHHHHTTTCEECCCCGGGEEECT-TSCEEECSCCEESCC--------CCCCTTCCHHHH-TTCCCCTTHHHH
T ss_pred             HHHHHHHHHHHHHhCCEecccCChHhEEEcC-CCCEEEEeccccccCCcccccccCCCCCccCHhHh-ccCCCCccchhH
Confidence            9999999999999999999999999999998 89999999999865433       23789999955 455689999999


Q ss_pred             HHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCC
Q 005958          309 CVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  388 (667)
Q Consensus       309 SLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kR  388 (667)
                      ||||++|+|++|.+||..            .........+..   .       .......+++++++||.+||+.||++|
T Consensus       192 slG~il~~l~~g~~p~~~------------~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~li~~~l~~~p~~R  249 (279)
T 3fdn_A          192 SLGVLCYEFLVGKPPFEA------------NTYQETYKRISR---V-------EFTFPDFVTEGARDLISRLLKHNPSQR  249 (279)
T ss_dssp             HHHHHHHHHHHSSCTTCC------------SSHHHHHHHHHH---T-------CCCCCTTSCHHHHHHHHHHCCSSGGGS
T ss_pred             hHHHHHHHHHHCCCCCCC------------CcHHHHHHHHHh---C-------CCCCCCcCCHHHHHHHHHHhccChhhC
Confidence            999999999999999852            222222222221   1       112334578899999999999999999


Q ss_pred             CCHHHHHcCCCCCCCC
Q 005958          389 ISCLDALRHPFLCGPR  404 (667)
Q Consensus       389 pSa~elL~HPwf~~~~  404 (667)
                      ||+.|+|+||||++..
T Consensus       250 ps~~e~l~h~~~~~~~  265 (279)
T 3fdn_A          250 PMLREVLEHPWITANS  265 (279)
T ss_dssp             CCHHHHHHCHHHHHHC
T ss_pred             CCHHHHhhCccccCCc
Confidence            9999999999998755

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=4.5e-44  Score=380.14  Aligned_cols=256  Identities=16%  Similarity=0.164  Sum_probs=195.5

Q ss_pred             CCeEEE---eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           86 GDFKIL---DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        86 ~~y~i~---~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ++|++.   +.||+|+||    +||+|.+..     +++.||||++... ......+|+.+++.+.     +||||++++
T Consensus         8 ~~y~~~~~~~~lG~G~~g----~V~~~~~~~-----~~~~vavK~~~~~-~~~~~~~e~~~l~~l~-----~h~niv~~~   72 (325)
T 3kn6_A            8 QHYDLDLKDKPLGEGSFS----ICRKCVHKK-----SNQAFAVKIISKR-MEANTQKEITALKLCE-----GHPNIVKLH   72 (325)
T ss_dssp             HHEEECTTSCCSEEETTE----EEEEEEETT-----TCCEEEEEEEEGG-GHHHHHHHHHHHHHTT-----TCTTBCCEE
T ss_pred             hccccccCCCccccCCCe----EEEEEEECC-----CCCEEEEEEEChh-hhhhHHHHHHHHHHhc-----CCCCeeEEE
Confidence            567775   789999999    999999998     7999999999764 3456789999999996     699999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     +....|+||| |+++|+|.+++...+         .+++                    ..++.++.||+.
T Consensus        73 ~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~~i~~qi~~  117 (325)
T 3kn6_A           73 EVFH-----DQLHTFLVME-LLNGGELFERIKKKK---------HFSE--------------------TEASYIMRKLVS  117 (325)
T ss_dssp             EEEE-----CSSEEEEEEC-CCCSCBHHHHHHHCS---------CCCH--------------------HHHHHHHHHHHH
T ss_pred             EEEE-----cCCEEEEEEE-ccCCCcHHHHHHhcC---------CCCH--------------------HHHHHHHHHHHH
Confidence            9999     8889999999 999999999998754         4555                    456789999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCC---eEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDR---HIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~---~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      ||.|||++||+||||||+|||++. ++   .+||+|||++......         .+.|+|||++ ....|+.++|||||
T Consensus       118 ~l~~LH~~~ivH~Dlkp~NIll~~-~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~-~~~~~~~~~Diwsl  195 (325)
T 3kn6_A          118 AVSHMHDVGVVHRDLKPENLLFTD-ENDNLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELL-NQNGYDESCDLWSL  195 (325)
T ss_dssp             HHHHHHHTTEECCCCCGGGEEEEC-----CEEEECCCTTCEECCC-----------------------CCCCHHHHHHHH
T ss_pred             HHHHHHHCCCeecCCCHHHEEEec-CCCcccEEEeccccceecCCCCCcccccCCCcCccCHHHh-cCCCCCCccchHHH
Confidence            999999999999999999999986 44   8999999999765432         3679999955 55569999999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      ||++|+|++|++||.......     ....   ..+.+..+......   .....+..+++++++||.+||+.||++|||
T Consensus       196 G~il~~ll~g~~pf~~~~~~~-----~~~~---~~~~~~~i~~~~~~---~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt  264 (325)
T 3kn6_A          196 GVILYTMLSGQVPFQSHDRSL-----TCTS---AVEIMKKIKKGDFS---FEGEAWKNVSQEAKDLIQGLLTVDPNKRLK  264 (325)
T ss_dssp             HHHHHHHHHSSCTTC------------CCC---HHHHHHHHTTTCCC---CCSHHHHTSCHHHHHHHHHHHCCCTTTCCC
T ss_pred             HHHHHHHHhCCCCCCCCcccc-----cccc---HHHHHHHHHcCCCC---CCcccccCCCHHHHHHHHHHCCCChhHCCC
Confidence            999999999999996432110     0111   12222223222111   112233568899999999999999999999


Q ss_pred             HHHHHcCCCCCCCC
Q 005958          391 CLDALRHPFLCGPR  404 (667)
Q Consensus       391 a~elL~HPwf~~~~  404 (667)
                      ++|+++||||++..
T Consensus       265 ~~ell~h~w~~~~~  278 (325)
T 3kn6_A          265 MSGLRYNEWLQDGS  278 (325)
T ss_dssp             TTTSTTCGGGCTTC
T ss_pred             HHHHhcChhhccCc
Confidence            99999999998764

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=2.5e-44  Score=395.78  Aligned_cols=275  Identities=18%  Similarity=0.250  Sum_probs=211.3

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGY  164 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~  164 (667)
                      ..+|++.+.||+|+||    +||+|++..     +++.||||++....  ....+|+++|+.++      ||||++++++
T Consensus        53 ~~~y~~~~~lG~G~fg----~Vy~~~~~~-----~~~~vaiK~~~~~~--~~~~~E~~il~~l~------hpniv~l~~~  115 (420)
T 1j1b_A           53 EVSYTDTKVIGNGSFG----VVYQAKLCD-----SGELVAIKKVLQDK--RFKNRELQIMRKLD------HCNIVRLRYF  115 (420)
T ss_dssp             EEEEEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEEECCT--TSCCHHHHHHHTCC------CTTBCCEEEE
T ss_pred             cceEEeeeEEeeCCCE----EEEEEEECC-----CCcEEEEEEecccc--hhHHHHHHHHHHcC------CCCccceeeE
Confidence            3579999999999999    999999987     79999999986532  23457999999994      9999999999


Q ss_pred             EEeccc-CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          165 VSSHTT-SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       165 ~~~~~~-~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      +..... .+..++++||| |+++ +|.+++.....     ....+++                    ..++.++.||+.|
T Consensus       116 ~~~~~~~~~~~~~~lv~e-~~~~-~l~~~~~~~~~-----~~~~l~~--------------------~~~~~~~~qi~~a  168 (420)
T 1j1b_A          116 FYSSGEKKDEVYLNLVLD-YVPE-TVYRVARHYSR-----AKQTLPV--------------------IYVKLYMYQLFRS  168 (420)
T ss_dssp             EEEEETTTTEEEEEEEEE-CCCE-EHHHHHHHHHH-----TTCCCCH--------------------HHHHHHHHHHHHH
T ss_pred             EeccCCCCcceeEEeehh-cccc-cHHHHHHHHhh-----ccCCCCH--------------------HHHHHHHHHHHHH
Confidence            864321 23446789999 9998 88887764210     0113443                    5678899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMA  315 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSLGviLy  315 (667)
                      |.|||++||+||||||+|||++.+++.+||+|||+|+.+...        .+.|+|||++.+...|+.++|||||||++|
T Consensus       169 L~~LH~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~  248 (420)
T 1j1b_A          169 LAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLA  248 (420)
T ss_dssp             HHHHHTTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHH
T ss_pred             HHHHHHCCccccCCChhhEEEeCCCCeEEeccchhhhhcccCCCceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHH
Confidence            999999999999999999999974678999999999865432        367999998777778999999999999999


Q ss_pred             HHHhCCCCChh---hhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCC-----c--ccccCCCHHHHHHHHHhhhcCc
Q 005958          316 KMVLRELMDPL---IFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTG-----F--QILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       316 emltG~~PF~~---~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~-----~--~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      ||++|++||.+   .+++..++...|.+........   ...........     +  ...+..++++++||.+||++||
T Consensus       249 ell~G~~pf~~~~~~~~l~~i~~~lg~p~~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP  325 (420)
T 1j1b_A          249 ELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREM---NPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTP  325 (420)
T ss_dssp             HHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHHHH---CSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSG
T ss_pred             HHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhh---ChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCCh
Confidence            99999999974   3455555556666554322221   11111000000     0  0234578999999999999999


Q ss_pred             CCCCCHHHHHcCCCCCCCCCC
Q 005958          386 SKRISCLDALRHPFLCGPRWR  406 (667)
Q Consensus       386 ~kRpSa~elL~HPwf~~~~~~  406 (667)
                      ++|||+.|+|+||||++..+.
T Consensus       326 ~~R~t~~e~l~hp~f~~~~~~  346 (420)
T 1j1b_A          326 TARLTPLEACAHSFFDELRDP  346 (420)
T ss_dssp             GGSCCHHHHHTSGGGGGGGCT
T ss_pred             hHCCCHHHHhCCHhhcccccc
Confidence            999999999999999887644

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=3.6e-44  Score=391.22  Aligned_cols=281  Identities=19%  Similarity=0.268  Sum_probs=211.9

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ....+|++.+.||+|+||    +||+|++..     ++ .||+|++....  ....+|+++|+.++      ||||++++
T Consensus        37 ~~~~~Y~~~~~lG~G~~g----~V~~a~~~~-----~~-~~aikk~~~~~--~~~~~E~~il~~l~------h~niv~l~   98 (394)
T 4e7w_A           37 QREIAYTNCKVIGNGSFG----VVFQAKLVE-----SD-EVAIKKVLQDK--RFKNRELQIMRIVK------HPNVVDLK   98 (394)
T ss_dssp             EEEEEEEEEEEEEEETTE----EEEEEEETT-----TE-EEEEEEEECCT--TSCCHHHHHHHTCC------CTTBCCEE
T ss_pred             cccceEEEeEEEeeCCCe----EEEEEEECC-----CC-eEEEEEEecCc--chHHHHHHHHHhCC------CCCcceEE
Confidence            345679999999999999    999999986     44 48888876432  22347999999994      99999999


Q ss_pred             EEEEeccc-CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          163 GYVSSHTT-SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       163 ~~~~~~~~-~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      +++..... .+...+++||| |+++ +|.+.+......     ...+++                    ..++.++.||+
T Consensus        99 ~~~~~~~~~~~~~~~~lv~e-~~~~-~l~~~~~~~~~~-----~~~~~~--------------------~~~~~~~~qi~  151 (394)
T 4e7w_A           99 AFFYSNGDKKDEVFLNLVLE-YVPE-TVYRASRHYAKL-----KQTMPM--------------------LLIKLYMYQLL  151 (394)
T ss_dssp             EEEEEESSSSSCEEEEEEEE-CCSE-EHHHHHHHHHHT-----TSCCCH--------------------HHHHHHHHHHH
T ss_pred             EEEEecCCCCCceEEEEEee-ccCc-cHHHHHHHHHhh-----cCCCCH--------------------HHHHHHHHHHH
Confidence            99974432 24456899999 9998 666555431100     013443                    56788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC--------CCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG--------PNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~--------~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      .||.|||++||+||||||+|||++..++.+||+|||+|+......        +.|+|||++.+...|+.++|||||||+
T Consensus       152 ~aL~~LH~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~i  231 (394)
T 4e7w_A          152 RSLAYIHSIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGEPNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCV  231 (394)
T ss_dssp             HHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHH
T ss_pred             HHHHHHHHCCccCCCCCHHHEEEcCCCCcEEEeeCCCcccccCCCCCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHH
Confidence            999999999999999999999999448999999999998654332        569999987777789999999999999


Q ss_pred             HHHHHhCCCCChh---hhhhhhhhhccCCChhHHHHHHHHHhcc-CCCC-CCCCc--ccccCCCHHHHHHHHHhhhcCcC
Q 005958          314 MAKMVLRELMDPL---IFTKFKSFLTKGIDPSCLREFLLQVLNR-NSSS-GNTGF--QILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       314 LyemltG~~PF~~---~~~~~~~~~~~g~~~~~l~~~~~~~~~~-~~~~-~~~~~--~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      +|||++|++||.+   ..+...+....|.+.............. ..+. ....+  ...+..++++++||.+||++||+
T Consensus       232 l~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~  311 (394)
T 4e7w_A          232 MAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQIKTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPS  311 (394)
T ss_dssp             HHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGG
T ss_pred             HHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChh
Confidence            9999999999984   3455555666666665433332211111 0000 00001  12345889999999999999999


Q ss_pred             CCCCHHHHHcCCCCCCCCCCCC
Q 005958          387 KRISCLDALRHPFLCGPRWRVD  408 (667)
Q Consensus       387 kRpSa~elL~HPwf~~~~~~~~  408 (667)
                      +|||+.|+|+||||++.++...
T Consensus       312 ~R~t~~e~l~hp~f~~~~~~~~  333 (394)
T 4e7w_A          312 ARLTAIEALCHPFFDELRTGEA  333 (394)
T ss_dssp             GSCCHHHHHTSGGGSTTTSSCC
T ss_pred             hCCCHHHHhcChhhhhhccccc
Confidence            9999999999999999876443

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=8.6e-44  Score=385.71  Aligned_cols=251  Identities=18%  Similarity=0.190  Sum_probs=197.7

Q ss_pred             CCeEE--EeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           86 GDFKI--LDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        86 ~~y~i--~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      +.|.+  .+.||+|+||    .||+|.+..     +++.||+|+++..  ...+.+.+|+++|++++      ||||+++
T Consensus        87 ~~~~~~~~~~lG~G~~g----~Vy~a~~~~-----~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~------hpnIv~~  151 (373)
T 2x4f_A           87 SFYTVSKTEILGGGRFG----QVHKCEETA-----TGLKLAAKIIKTRGMKDKEEVKNEISVMNQLD------HANLIQL  151 (373)
T ss_dssp             GTEEEEEEEECC---------CEEEEEETT-----TCCEEEEEEEECCSHHHHHHHHHHHHHHTTCC------CTTBCCE
T ss_pred             cceeeecceEEecCcCE----EEEEEEEcC-----CCcEEEEEEEcccccccHHHHHHHHHHHHhCC------CCCCCeE
Confidence            34555  6789999999    999999987     7999999999763  34466789999999994      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     ..+.++|||| |+++|+|.+++....        ..+++                    ..++.++.||+
T Consensus       152 ~~~~~-----~~~~~~lv~E-~~~~~~L~~~l~~~~--------~~l~~--------------------~~~~~i~~qi~  197 (373)
T 2x4f_A          152 YDAFE-----SKNDIVLVME-YVDGGELFDRIIDES--------YNLTE--------------------LDTILFMKQIC  197 (373)
T ss_dssp             EEEEE-----CSSEEEEEEE-CCTTCEEHHHHHHTG--------GGCCH--------------------HHHHHHHHHHH
T ss_pred             EEEEE-----ECCEEEEEEe-CCCCCcHHHHHHhcC--------CCCCH--------------------HHHHHHHHHHH
Confidence            99999     7789999999 999999999987642        13554                    45677999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcC-CCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISP-VDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~-~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      .||.|||++||+||||||+|||+.. .++.+||+|||+++.....        .+.|+|||++ ....++.++|||||||
T Consensus       198 ~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DiwslG~  276 (373)
T 2x4f_A          198 EGIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKLKVNFGTPEFLAPEVV-NYDFVSFPTDMWSVGV  276 (373)
T ss_dssp             HHHHHHHHTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCBCCCCCSSCTTCCHHHH-TTCBCCHHHHHHHHHH
T ss_pred             HHHHHHHHCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccccccccCCCcEeChhhc-cCCCCCcHHhHHHHHH
Confidence            9999999999999999999999942 2679999999999866432        3779999955 4556899999999999


Q ss_pred             HHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHH
Q 005958          313 MMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCL  392 (667)
Q Consensus       313 iLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~  392 (667)
                      ++|||++|.+||..            ........   .+......   ........+++++++||.+||++||++|||+.
T Consensus       277 il~elltg~~pf~~------------~~~~~~~~---~i~~~~~~---~~~~~~~~~~~~~~~li~~~L~~dp~~Rps~~  338 (373)
T 2x4f_A          277 IAYMLLSGLSPFLG------------DNDAETLN---NILACRWD---LEDEEFQDISEEAKEFISKLLIKEKSWRISAS  338 (373)
T ss_dssp             HHHHHHHSSCTTCC------------SSHHHHHH---HHHHTCCC---SCSGGGTTSCHHHHHHHHTTSCSSGGGSCCHH
T ss_pred             HHHHHHhCCCCCCC------------CCHHHHHH---HHHhccCC---CChhhhccCCHHHHHHHHHHcCCChhhCCCHH
Confidence            99999999999852            22222211   22211111   11223456789999999999999999999999


Q ss_pred             HHHcCCCCCCCC
Q 005958          393 DALRHPFLCGPR  404 (667)
Q Consensus       393 elL~HPwf~~~~  404 (667)
                      |+|+||||++..
T Consensus       339 e~l~hp~~~~~~  350 (373)
T 2x4f_A          339 EALKHPWLSDHK  350 (373)
T ss_dssp             HHHHSHHHHCHH
T ss_pred             HHhcCcCcCCCc
Confidence            999999998754

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=2.1e-43  Score=378.42  Aligned_cols=275  Identities=17%  Similarity=0.134  Sum_probs=206.1

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcc-hhhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS-VQAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~-~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      .+..++|++.++||+|+||    +||+|++..     +++.||||++.. ....+...+|+.+++.+.. ..++||||++
T Consensus        31 ~~~~~~y~~~~~lG~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~-~~~~h~~iv~  100 (360)
T 3llt_A           31 MLLNNAFLVIRKMGDGTFG----RVLLCQHID-----NKKYYAVKVVRNIKKYTRSAKIEADILKKIQN-DDINNNNIVK  100 (360)
T ss_dssp             CEETTTEEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEECSCHHHHHHHHHHHHHHHHTCC-CSTTGGGBCC
T ss_pred             eEecCEEEEEEEEcccCCe----EEEEEEECC-----CCeEEEEEEeccchhhhhhhHHHHHHHHHhcc-cCCCCCCeec
Confidence            3456899999999999999    999999987     789999999975 3334566889999999952 3445999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     ..+.+|+||| |+ +++|.+++.....       ..+++                    ..++.++.||
T Consensus       101 ~~~~~~-----~~~~~~lv~e-~~-~~~L~~~~~~~~~-------~~~~~--------------------~~~~~i~~qi  146 (360)
T 3llt_A          101 YHGKFM-----YYDHMCLIFE-PL-GPSLYEIITRNNY-------NGFHI--------------------EDIKLYCIEI  146 (360)
T ss_dssp             EEEEEE-----ETTEEEEEEC-CC-CCBHHHHHHHTTT-------CCCCH--------------------HHHHHHHHHH
T ss_pred             ccceee-----ECCeeEEEEc-CC-CCCHHHHHHhcCC-------CCCCH--------------------HHHHHHHHHH
Confidence            999998     6789999999 99 6699999987531       12443                    5678899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcC------------------------CCCeEEEeeecccccccCC------CCCCC
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISP------------------------VDRHIKVGILGNAADFYED------GPNNS  290 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~------------------------~~~~vKL~DFGlA~~~~~~------~~~Y~  290 (667)
                      +.||+|||++||+||||||+|||++.                        .++.+||+|||+|......      .+.|+
T Consensus       147 ~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~gt~~y~  226 (360)
T 3llt_A          147 LKALNYLRKMSLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYHGSIINTRQYR  226 (360)
T ss_dssp             HHHHHHHHHTTEECSCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCCCSCCSCGGGC
T ss_pred             HHHHHHHHHCCeeeCCCCcccEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecCCCCcCccCccccc
Confidence            99999999999999999999999973                        2678999999999865432      36799


Q ss_pred             CcccccCCCCCCchhhHHHHHHHHHHHHhCCCCChhh---hhhhhhhhccCCChhHHHHHHHH-HhccC---------CC
Q 005958          291 SPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLI---FTKFKSFLTKGIDPSCLREFLLQ-VLNRN---------SS  357 (667)
Q Consensus       291 APE~l~~~~~ys~ksDIWSLGviLyemltG~~PF~~~---~~~~~~~~~~g~~~~~l~~~~~~-~~~~~---------~~  357 (667)
                      |||++. ...|+.++|||||||++|+|++|++||...   .....+....+..+......... .....         .+
T Consensus       227 aPE~~~-~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p  305 (360)
T 3llt_A          227 APEVIL-NLGWDVSSDMWSFGCVLAELYTGSLLFRTHEHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWP  305 (360)
T ss_dssp             CHHHHT-TCCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTT
T ss_pred             CcHHHc-CCCCCCccchHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHhcCCCCHHHHhhhhhccCccccCcccceecCc
Confidence            999655 456999999999999999999999999632   11222222233333222111100 00000         00


Q ss_pred             CCCCC-----------cccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCC
Q 005958          358 SGNTG-----------FQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLC  401 (667)
Q Consensus       358 ~~~~~-----------~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~  401 (667)
                      .....           .......++++.+||.+||++||++|||++|+|+||||+
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpta~elL~hp~f~  360 (360)
T 3llt_A          306 ENASSINSIKHVKKCLPLYKIIKHELFCDFLYSILQIDPTLRPSPAELLKHKFLE  360 (360)
T ss_dssp             TTCSCHHHHHHHHTCCCHHHHCCCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGGC
T ss_pred             ccccchhhhhhhhhcccccccchHHHHHHHHHHHhcCChhhCCCHHHHhcCcccC
Confidence            00000           000112347889999999999999999999999999995

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=7.1e-44  Score=398.55  Aligned_cols=250  Identities=22%  Similarity=0.257  Sum_probs=209.3

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCC
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      ..+..++|++++.||+|+||    .||+|++..     +|+.||||++....     ....+.+|+.+|+.++      |
T Consensus        11 ~~~~~~~Y~l~~~LG~G~fg----~V~~a~~~~-----~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~------H   75 (476)
T 2y94_A           11 GRVKIGHYILGDTLGVGTFG----KVKVGKHEL-----TGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFR------H   75 (476)
T ss_dssp             SCCEETTEEEEEEEECCSSS----CEEEEEETT-----TCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCC------C
T ss_pred             CCceecCEEEEEEEeeCCCe----EEEEEEECC-----CCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCC------C
Confidence            34667999999999999999    999999997     89999999997642     2346789999999984      9


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      |||+++++++.     ..+.+|+||| |+++|+|.+++...+         .+++                    ..++.
T Consensus        76 pnIv~l~~~~~-----~~~~~~lv~E-~~~gg~L~~~l~~~~---------~l~~--------------------~~~~~  120 (476)
T 2y94_A           76 PHIIKLYQVIS-----TPSDIFMVME-YVSGGELFDYICKNG---------RLDE--------------------KESRR  120 (476)
T ss_dssp             TTBCCEEEEEE-----CSSEEEEEEE-CCSSEEHHHHTTSSS---------SCCH--------------------HHHHH
T ss_pred             CCCCcEEEEEE-----ECCEEEEEEe-CCCCCcHHHHHHhcC---------CCCH--------------------HHHHH
Confidence            99999999999     7789999999 999999999997654         4565                    45678


Q ss_pred             HHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhH
Q 005958          236 LMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       236 i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDI  307 (667)
                      ++.||+.||.|||++||+||||||+|||++. ++.+||+|||++......        .+.|+|||++.+...++.++||
T Consensus       121 i~~qi~~aL~~LH~~givHrDLkp~NIll~~-~~~vkL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di  199 (476)
T 2y94_A          121 LFQQILSGVDYCHRHMVVHRDLKPENVLLDA-HMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDI  199 (476)
T ss_dssp             HHHHHHHHHHHHHTTTEECSCCSGGGEEECT-TCCEEECCCSSCEECCTTCCBCCCCSCSTTCCHHHHTTCCBCSHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCcccccHHHEEEec-CCCeEEEeccchhhccccccccccCCCcCeEChhhccCCCCCCCccee
Confidence            9999999999999999999999999999998 899999999999865443        3789999977666556899999


Q ss_pred             HHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          308 RCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       308 WSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      |||||++|+|++|++||.+            .....+..   .+....       +.....+++++++||.+||+.||++
T Consensus       200 wSlGvil~elltG~~Pf~~------------~~~~~~~~---~i~~~~-------~~~p~~~s~~~~~Li~~~L~~dP~~  257 (476)
T 2y94_A          200 WSSGVILYALLCGTLPFDD------------DHVPTLFK---KICDGI-------FYTPQYLNPSVISLLKHMLQVDPMK  257 (476)
T ss_dssp             HHHHHHHHHHHHSSCSSCC------------SSSHHHHH---HHHTTC-------CCCCTTCCHHHHHHHHHHTCSSTTT
T ss_pred             hhhHHHHHHHhhCCCCCCC------------CCHHHHHH---HHhcCC-------cCCCccCCHHHHHHHHHHcCCCchh
Confidence            9999999999999999952            22222222   222211       1223457899999999999999999


Q ss_pred             CCCHHHHHcCCCCCCC
Q 005958          388 RISCLDALRHPFLCGP  403 (667)
Q Consensus       388 RpSa~elL~HPwf~~~  403 (667)
                      |||++|+++||||+..
T Consensus       258 Rpt~~eil~hp~~~~~  273 (476)
T 2y94_A          258 RATIKDIREHEWFKQD  273 (476)
T ss_dssp             SCCHHHHHTCHHHHTT
T ss_pred             CcCHHHHHhCHHhhhc
Confidence            9999999999999864

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=2.8e-43  Score=364.08  Aligned_cols=251  Identities=18%  Similarity=0.229  Sum_probs=205.3

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      .++|++.+.||+|+||    .||+|.+..     +++.||+|++....    ..+.+.+|+.++++++      ||||++
T Consensus         5 ~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~   69 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFS----VVRRCVHKT-----TGLEFAAKIINTKKLSARDFQKLEREARICRKLQ------HPNIVR   69 (284)
T ss_dssp             TTTEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCC------CTTBCC
T ss_pred             hhhhhhhhhhcCcCCe----EEEEEEEcC-----CCceEEEEEeecccCCHHHHHHHHHHHHHHHHcC------CCCcCe
Confidence            4789999999999999    999999998     79999999997532    2355689999999994      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     ..+..++||| |+++|+|.+++....         .+++                    ..++.++.||
T Consensus        70 ~~~~~~-----~~~~~~~v~e-~~~~~~l~~~~~~~~---------~~~~--------------------~~~~~~~~~i  114 (284)
T 3kk8_A           70 LHDSIQ-----EESFHYLVFD-LVTGGELFEDIVARE---------FYSE--------------------ADASHCIQQI  114 (284)
T ss_dssp             EEEEEE-----CSSEEEEEEC-CCCSCBHHHHHHHHS---------SCCH--------------------HHHHHHHHHH
T ss_pred             EEEEEE-----cCCEEEEEEe-cCCCCCHHHHHHhcC---------CCCH--------------------HHHHHHHHHH
Confidence            999998     7889999999 999999999988754         4554                    4577899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCC--CCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPV--DRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~--~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      +.||.|||++||+||||||+||+++.+  ++.+||+|||++......        .+.|+|||++ ....++.++|||||
T Consensus       115 ~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~sl  193 (284)
T 3kk8_A          115 LESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVL-KKDPYSKPVDIWAC  193 (284)
T ss_dssp             HHHHHHHHHTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSSCBCCCSCSCGGGCCHHHH-TTCCBCTHHHHHHH
T ss_pred             HHHHHHHHHCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccCccccCCCCCcCCcCchhh-cCCCCCcccchHHH
Confidence            999999999999999999999999862  235999999999765433        3679999955 45568999999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      ||++|+|++|++||..            .........+....   ..   ...+....+++++.+||.+||+.||++|||
T Consensus       194 G~~l~~l~~g~~pf~~------------~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~li~~~l~~dp~~Rps  255 (284)
T 3kk8_A          194 GVILYILLVGYPPFWD------------EDQHRLYAQIKAGA---YD---YPSPEWDTVTPEAKSLIDSMLTVNPKKRIT  255 (284)
T ss_dssp             HHHHHHHHHSSCSSCC------------SSHHHHHHHHHHTC---CC---CCTTTTTTSCHHHHHHHHHHSCSSTTTSCC
T ss_pred             HHHHHHHHHCCCCCCC------------CchhHHHHHHHhcc---cc---CCchhhcccCHHHHHHHHHHcccChhhCCC
Confidence            9999999999999852            22222222222111   11   111233567899999999999999999999


Q ss_pred             HHHHHcCCCCCCCC
Q 005958          391 CLDALRHPFLCGPR  404 (667)
Q Consensus       391 a~elL~HPwf~~~~  404 (667)
                      ++|+|+||||++..
T Consensus       256 ~~~~l~h~~~~~~~  269 (284)
T 3kk8_A          256 ADQALKVPWICNRE  269 (284)
T ss_dssp             HHHHTTSHHHHSCC
T ss_pred             HHHHhcCccccCCh
Confidence            99999999998865

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=9.2e-44  Score=413.77  Aligned_cols=254  Identities=20%  Similarity=0.245  Sum_probs=211.5

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCC
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      ..+.+++|++++.||+|+||    .||+|+++.     +++.||||++++..     ..+...+|..+|..+.     .|
T Consensus       336 ~~~~~~~f~~~~~LG~G~fG----~V~~~~~~~-----~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~-----~~  401 (674)
T 3pfq_A          336 DRMKLTDFNFLMVLGKGSFG----KVMLSERKG-----TDELYAVKILKKDVVIQDDDVECTMVEKRVLALPG-----KP  401 (674)
T ss_dssp             ----CTTEEEEEESSBTTTB----CEEEEEESS-----SCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTT-----CC
T ss_pred             ccccccceEEEEEEccCCCE----EEEEEEECC-----CCcEEEEEEEeccccccHHHHHHHHHHHHHHHhcc-----CC
Confidence            34667899999999999999    999999998     89999999998532     2345688999998886     69


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      |||+++++++.     +.+.+||||| |+++|+|.+++...+         .++|.                    .++.
T Consensus       402 ~~i~~l~~~~~-----~~~~~~lV~E-~~~gg~L~~~l~~~~---------~~~~~--------------------~~~~  446 (674)
T 3pfq_A          402 PFLTQLHSCFQ-----TMDRLYFVME-YVNGGDLMYHIQQVG---------RFKEP--------------------HAVF  446 (674)
T ss_dssp             TTBCCEEEECB-----CSSEEEEEEE-CCCSCBHHHHHHHHS---------SCCHH--------------------HHHH
T ss_pred             CeEEEEEEEEE-----eCCEEEEEEe-CcCCCcHHHHHHhcC---------CCCHH--------------------HHHH
Confidence            99999999998     7889999999 999999999998754         56654                    4678


Q ss_pred             HHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhh
Q 005958          236 LMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       236 i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksD  306 (667)
                      |+.||+.||+|||++||+||||||+|||++. ++++||+|||+|+....         +.+.|+|||++ ....|+.++|
T Consensus       447 ~~~qi~~aL~~LH~~gIiHrDLKp~NILl~~-~g~ikL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l-~~~~~~~~~D  524 (674)
T 3pfq_A          447 YAAEIAIGLFFLQSKGIIYRDLKLDNVMLDS-EGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEII-AYQPYGKSVD  524 (674)
T ss_dssp             HHHHHHHHHHHHHHTSEECCCCCSTTEEECS-SSCEEECCCTTCEECCCTTCCBCCCCSCSSSCCHHHH-TCCCBSTHHH
T ss_pred             HHHHHHHHHHHHHhCCeEeccCChhhEEEcC-CCcEEEeecceeeccccCCcccccccCCCcccCHhhh-cCCCCCccce
Confidence            9999999999999999999999999999998 89999999999985322         23789999955 5557999999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          307 MRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       307 IWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      ||||||++|||++|++||.            +.+...+.   ..++...       ...+..+++++++||.+||+.||+
T Consensus       525 vwSlGvilyelltG~~Pf~------------~~~~~~~~---~~i~~~~-------~~~p~~~s~~~~~li~~lL~~dP~  582 (674)
T 3pfq_A          525 WWAFGVLLYEMLAGQAPFE------------GEDEDELF---QSIMEHN-------VAYPKSMSKEAVAICKGLMTKHPG  582 (674)
T ss_dssp             HHHHHHHHHHHHHSSCSSC------------CSSHHHHH---HHHHSSC-------CCCCTTSCHHHHHHHHHHSCSSST
T ss_pred             EechHHHHHHHHcCCCCCC------------CCCHHHHH---HHHHhCC-------CCCCccCCHHHHHHHHHHccCCHH
Confidence            9999999999999999995            32333222   2333221       233457899999999999999999


Q ss_pred             CCCCH-----HHHHcCCCCCCCCCCC
Q 005958          387 KRISC-----LDALRHPFLCGPRWRV  407 (667)
Q Consensus       387 kRpSa-----~elL~HPwf~~~~~~~  407 (667)
                      +||++     +|+++||||++++|..
T Consensus       583 ~R~~~~~~~~~ei~~h~ff~~i~w~~  608 (674)
T 3pfq_A          583 KRLGCGPEGERDIKEHAFFRYIDWEK  608 (674)
T ss_dssp             TCTTCSTTHHHHHHSSGGGSSCCHHH
T ss_pred             HCCCCCCCcHHHHhcCccccCCCHHH
Confidence            99997     9999999999998743

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=1.4e-43  Score=374.48  Aligned_cols=250  Identities=19%  Similarity=0.257  Sum_probs=205.7

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--------hHHHHHHHHHHHHHHhhccCCCCC
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--------AQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--------~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      .++|++.+.||+|+||    .||+|++..     +++.||+|++....        ..+.+.+|+.+++++.      ||
T Consensus        11 ~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~------h~   75 (321)
T 2a2a_A           11 EDFYDIGEELGSGQFA----IVKKCREKS-----TGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVL------HH   75 (321)
T ss_dssp             HHHEEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCC------CT
T ss_pred             hccEEEeeEeeecCCE----EEEEEEECC-----CCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCC------CC
Confidence            4779999999999999    999999997     79999999997532        2456789999999995      99


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++.     +.+.+++||| |+++|+|.+++...+         .+++                    ..++.+
T Consensus        76 ~iv~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~~i  120 (321)
T 2a2a_A           76 NVITLHDVYE-----NRTDVVLILE-LVSGGELFDFLAQKE---------SLSE--------------------EEATSF  120 (321)
T ss_dssp             TBCCEEEEEE-----CSSEEEEEEC-CCCSCBHHHHHHTCS---------CEEH--------------------HHHHHH
T ss_pred             CcceEEEEEe-----cCCEEEEEEE-cCCCCcHHHHHHhcC---------CCCH--------------------HHHHHH
Confidence            9999999998     7889999999 999999999998653         3443                    457889


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCC----eEEEeeecccccccCC--------CCCCCCcccccCCCCCCch
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDR----HIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~----~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~k  304 (667)
                      +.||+.||.|||++||+||||||+|||++. ++    .+||+|||++......        .+.|+|||++ ....++.+
T Consensus       121 ~~qi~~aL~~lH~~~ivH~dikp~NIl~~~-~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~  198 (321)
T 2a2a_A          121 IKQILDGVNYLHTKKIAHFDLKPENIMLLD-KNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIV-NYEPLGLE  198 (321)
T ss_dssp             HHHHHHHHHHHHHTTEECCCCSGGGEEESC-TTSSSCCEEECCCTTCEECCTTCCCCCCCSCGGGCCHHHH-TTCCCCTH
T ss_pred             HHHHHHHHHHHHhCCeecCCCChHHEEEec-CCCCcCCEEEccCccceecCccccccccCCCCCccCcccc-cCCCCCCc
Confidence            999999999999999999999999999998 55    7999999999866543        3679999955 45568999


Q ss_pred             hhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          305 FDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       305 sDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      +|||||||++|+|++|..||..            .........+   ......   .........++++++||.+||+.|
T Consensus       199 ~Di~slG~il~~l~~g~~pf~~------------~~~~~~~~~i---~~~~~~---~~~~~~~~~~~~~~~li~~~l~~d  260 (321)
T 2a2a_A          199 ADMWSIGVITYILLSGASPFLG------------DTKQETLANI---TSVSYD---FDEEFFSHTSELAKDFIRKLLVKE  260 (321)
T ss_dssp             HHHHHHHHHHHHHHHSCCSSCC------------SSHHHHHHHH---HTTCCC---CCHHHHTTCCHHHHHHHHTTSCSS
T ss_pred             cccHHHHHHHHHHHHCCCCCCC------------CCHHHHHHHH---Hhcccc---cChhhhcccCHHHHHHHHHHcCCC
Confidence            9999999999999999999852            2222222211   111110   011223567889999999999999


Q ss_pred             cCCCCCHHHHHcCCCCCCCC
Q 005958          385 PSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       385 P~kRpSa~elL~HPwf~~~~  404 (667)
                      |++|||+.|+|+||||....
T Consensus       261 p~~Rps~~e~l~hp~~~~~~  280 (321)
T 2a2a_A          261 TRKRLTIQEALRHPWITPVD  280 (321)
T ss_dssp             TTTSCCHHHHHHSTTTSCSS
T ss_pred             hhhCcCHHHHhcCccccCCC
Confidence            99999999999999998866

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.6e-44  Score=391.03  Aligned_cols=283  Identities=19%  Similarity=0.234  Sum_probs=198.9

Q ss_pred             CCeEE-EeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEE
Q 005958           86 GDFKI-LDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGY  164 (667)
Q Consensus        86 ~~y~i-~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~  164 (667)
                      +.|++ +++||+|+||    +||+|+++...   +++.||||++........+.+|+.+|++++      ||||++++++
T Consensus        20 ~~y~~~g~~lG~G~~g----~Vy~~~~~~~~---~~~~vaiK~~~~~~~~~~~~~E~~~l~~l~------hpniv~~~~~   86 (405)
T 3rgf_A           20 DLFEYEGCKVGRGTYG----HVYKAKRKDGK---DDKDYALKQIEGTGISMSACREIALLRELK------HPNVISLQKV   86 (405)
T ss_dssp             HHEECSSCCCC---------EEEEEEESSSS---CCCCEEEEECSSSSCCHHHHHHHHHHHHCC------CTTBCCCCEE
T ss_pred             hhhhhcCcEeeecCCe----EEEEEEEccCC---CCeEEEEEEECCCCCCHHHHHHHHHHHhcC------CCCeeeEeeE
Confidence            45776 5589999999    99999987421   688999999987666667889999999995      9999999999


Q ss_pred             EEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHH
Q 005958          165 VSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGV  244 (667)
Q Consensus       165 ~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL  244 (667)
                      +...   ....+|+||| |+++ +|.+++.........                    .....++...++.|+.||+.||
T Consensus        87 ~~~~---~~~~~~lv~e-~~~~-~l~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~i~~qi~~al  141 (405)
T 3rgf_A           87 FLSH---ADRKVWLLFD-YAEH-DLWHIIKFHRASKAN--------------------KKPVQLPRGMVKSLLYQILDGI  141 (405)
T ss_dssp             EEET---TTTEEEEEEE-CCSE-EHHHHHHHHHHHC---------------------------CCHHHHHHHHHHHHHHH
T ss_pred             EecC---CCCeEEEEEe-CCCC-CHHHHHHHhcccccc--------------------ccccCCCHHHHHHHHHHHHHHH
Confidence            9643   6789999999 9987 999998753210000                    0111233467889999999999


Q ss_pred             HHHHHCCCcccCCCCCcEEE----cCCCCeEEEeeecccccccCC------------CCCCCCcccccCCCCCCchhhHH
Q 005958          245 NYLHSHGLAHTELRLENVHI----SPVDRHIKVGILGNAADFYED------------GPNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       245 ~yLHs~gIvHrDLKPeNILl----~~~~~~vKL~DFGlA~~~~~~------------~~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      .|||++||+||||||+|||+    +. ++.+||+|||+|+.+...            .+.|+|||++.+...|+.++|||
T Consensus       142 ~~LH~~~ivH~Dlkp~NIll~~~~~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Diw  220 (405)
T 3rgf_A          142 HYLHANWVLHRDLKPANILVMGEGPE-RGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIW  220 (405)
T ss_dssp             HHHHHTTCCCCCCCGGGEEECCSSTT-TTCEEECCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHH
T ss_pred             HHHHhCCEeCCCcCHHHeEEecCCCC-CCcEEEEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhH
Confidence            99999999999999999999    44 689999999999765432            36799999877767799999999


Q ss_pred             HHHHHHHHHHhCCCCChhh------------hhhhhhhhccCCChhHHH----------HHHHHHhccCCCCCC---CCc
Q 005958          309 CVGFMMAKMVLRELMDPLI------------FTKFKSFLTKGIDPSCLR----------EFLLQVLNRNSSSGN---TGF  363 (667)
Q Consensus       309 SLGviLyemltG~~PF~~~------------~~~~~~~~~~g~~~~~l~----------~~~~~~~~~~~~~~~---~~~  363 (667)
                      ||||++|||++|++||...            .++..++...|.+.....          ...............   ...
T Consensus       221 SlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (405)
T 3rgf_A          221 AIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYME  300 (405)
T ss_dssp             HHHHHHHHHHHSSCTTCCCC------CCCCHHHHHHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCCccccccccccchHHHHHHHHHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHh
Confidence            9999999999999999632            222222222232221100          000000000000000   000


Q ss_pred             ccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCCCCC
Q 005958          364 QILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPRWRV  407 (667)
Q Consensus       364 ~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~~~~  407 (667)
                      ......++++++||.+||++||++|||++|+|+||||.+..++.
T Consensus       301 ~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L~hp~f~~~~~~~  344 (405)
T 3rgf_A          301 KHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYFLEDPLPT  344 (405)
T ss_dssp             TTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTSSSCCC
T ss_pred             hcCCCCCHHHHHHHHHHccCCcccCCCHHHHhcChhhccCCCCc
Confidence            01112367899999999999999999999999999999876543

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.2e-43  Score=370.64  Aligned_cols=247  Identities=19%  Similarity=0.228  Sum_probs=198.0

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      .+..++|++.++||+|+||    +||+|++..     +++.||||++...    .......+|+..+.++.     .|||
T Consensus        53 ~~~~~~y~~~~~LG~G~~g----~Vy~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~-----~h~~  118 (311)
T 3p1a_A           53 SFFQQSFQRLSRLGHGSYG----EVFKVRSKE-----DGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVG-----QHPC  118 (311)
T ss_dssp             CHHHHHEEEEEEEEEETTE----EEEEEEETT-----TSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHC-----CCTT
T ss_pred             chhhhheeeeheeccCCCe----EEEEEEECC-----CCeEEEEEEecccccChHHHHHHHHHHHHHHHhc-----CCCc
Confidence            4455789999999999999    999999997     7999999998642    22334466777777764     6999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     +.+.+|+||| |+++ +|.+++...+        ..+++                    ..++.++
T Consensus       119 iv~l~~~~~-----~~~~~~lv~e-~~~~-~L~~~~~~~~--------~~l~~--------------------~~~~~i~  163 (311)
T 3p1a_A          119 CVRLEQAWE-----EGGILYLQTE-LCGP-SLQQHCEAWG--------ASLPE--------------------AQVWGYL  163 (311)
T ss_dssp             BCCEEEEEE-----ETTEEEEEEE-CCCC-BHHHHHHHHC--------SCCCH--------------------HHHHHHH
T ss_pred             EEEEEEEEE-----eCCEEEEEEe-ccCC-CHHHHHHhcC--------CCCCH--------------------HHHHHHH
Confidence            999999998     7789999999 9965 9999987653        13554                    4578899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHH
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRC  309 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWS  309 (667)
                      .||+.||+|||++||+||||||+|||++. ++.+||+|||++......        .+.|+|||++.+  .++.++||||
T Consensus       164 ~qi~~aL~~LH~~~ivH~Dikp~NIll~~-~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~Diws  240 (311)
T 3p1a_A          164 RDTLLALAHLHSQGLVHLDVKPANIFLGP-RGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQG--SYGTAADVFS  240 (311)
T ss_dssp             HHHHHHHHHHHHTTEECCCCSGGGEEECG-GGCEEECCCTTCEECC------CCCCCGGGCCGGGGGT--CCSTHHHHHH
T ss_pred             HHHHHHHHHHHHCCEecCCCCHHHEEECC-CCCEEEccceeeeecccCCCCcccCCCccccCHhHhcC--CCCchhhHHH
Confidence            99999999999999999999999999998 899999999999765432        368999996654  6899999999


Q ss_pred             HHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          310 VGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       310 LGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      |||++|||++|..||........              .    ...     .........+++++.+||.+||+.||++||
T Consensus       241 lG~il~el~~g~~~~~~~~~~~~--------------~----~~~-----~~~~~~~~~~~~~l~~li~~~L~~dP~~Rp  297 (311)
T 3p1a_A          241 LGLTILEVACNMELPHGGEGWQQ--------------L----RQG-----YLPPEFTAGLSSELRSVLVMMLEPDPKLRA  297 (311)
T ss_dssp             HHHHHHHHHHTCCCCSSHHHHHH--------------H----TTT-----CCCHHHHTTSCHHHHHHHHHHSCSSTTTSC
T ss_pred             HHHHHHHHHhCCCCCCCccHHHH--------------H----hcc-----CCCcccccCCCHHHHHHHHHHcCCChhhCc
Confidence            99999999999766542211110              0    000     001122345788999999999999999999


Q ss_pred             CHHHHHcCCCCCCC
Q 005958          390 SCLDALRHPFLCGP  403 (667)
Q Consensus       390 Sa~elL~HPwf~~~  403 (667)
                      |++|+|+||||+++
T Consensus       298 t~~ell~hp~~~~p  311 (311)
T 3p1a_A          298 TAEALLALPVLRQP  311 (311)
T ss_dssp             CHHHHHTSGGGSCC
T ss_pred             CHHHHHhCccccCC
Confidence            99999999999863

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=7.2e-43  Score=363.46  Aligned_cols=255  Identities=20%  Similarity=0.238  Sum_probs=208.4

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----------hHHHHHHHHHHHHHHhhcc
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----------AQRRGRRAIEVLKKLVRRR  151 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----------~~~~~~rEi~iL~~L~~~~  151 (667)
                      -..++|++.+.||+|+||    .||+|.+..     +++.||||++....           ..+.+.+|+.+++++.   
T Consensus        14 ~~~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~---   81 (298)
T 1phk_A           14 GFYENYEPKEILGRGVSS----VVRRCIHKP-----TCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVS---   81 (298)
T ss_dssp             -CTTTEEEEEEEEECSSE----EEEEEEETT-----TTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred             chhhccceeeeecCCCce----EEEEEEEcC-----cCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhc---
Confidence            346899999999999999    999999987     79999999996431           2345689999999996   


Q ss_pred             CCCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHH
Q 005958          152 LMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLR  231 (667)
Q Consensus       152 ~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~  231 (667)
                        +||||+++++++.     ..+..++||| |+++|+|.+++....         .+++                    .
T Consensus        82 --~h~~i~~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~~~~--------------------~  124 (298)
T 1phk_A           82 --GHPNIIQLKDTYE-----TNTFFFLVFD-LMKKGELFDYLTEKV---------TLSE--------------------K  124 (298)
T ss_dssp             --TCTTBCCEEEEEE-----CSSEEEEEEE-CCTTCBHHHHHHHHS---------SCCH--------------------H
T ss_pred             --CCCCEeeeeeeec-----cCCeEEEEEe-ccCCCcHHHHHhccC---------CCCH--------------------H
Confidence              6999999999998     7889999999 999999999998753         4554                    4


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCccccc-----CC
Q 005958          232 LIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNM-----DR  298 (667)
Q Consensus       232 ~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~-----~~  298 (667)
                      .++.++.||+.||.|||++||+||||||+||+++. ++.+||+|||++......        .+.|+|||++.     ..
T Consensus       125 ~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  203 (298)
T 1phk_A          125 ETRKIMRALLEVICALHKLNIVHRDLKPENILLDD-DMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNH  203 (298)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECT-TCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEcC-CCcEEEecccchhhcCCCcccccccCCccccCHHHhcccccccc
Confidence            57889999999999999999999999999999998 899999999999765433        36799999764     34


Q ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHH
Q 005958          299 RQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLS  378 (667)
Q Consensus       299 ~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~  378 (667)
                      ..++.++|||||||++|+|++|..||..            .........+.   .....   ...+....+++++.+||.
T Consensus       204 ~~~~~~~Di~slG~~l~~l~~g~~p~~~------------~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~l~~li~  265 (298)
T 1phk_A          204 PGYGKEVDMWSTGVIMYTLLAGSPPFWH------------RKQMLMLRMIM---SGNYQ---FGSPEWDDYSDTVKDLVS  265 (298)
T ss_dssp             CCBCTHHHHHHHHHHHHHHHHSSCSSCC------------SSHHHHHHHHH---HTCCC---CCTTTGGGSCHHHHHHHH
T ss_pred             ccCCcccccHhHHHHHHHHHHCCCCCcC------------ccHHHHHHHHh---cCCcc---cCcccccccCHHHHHHHH
Confidence            5689999999999999999999999852            22222222221   11111   111233567899999999


Q ss_pred             HhhhcCcCCCCCHHHHHcCCCCCCCCC
Q 005958          379 LLLATKPSKRISCLDALRHPFLCGPRW  405 (667)
Q Consensus       379 ~~L~~DP~kRpSa~elL~HPwf~~~~~  405 (667)
                      +||+.||++|||+.|+|+||||++..+
T Consensus       266 ~~l~~dp~~Rps~~~ll~h~~~~~~~~  292 (298)
T 1phk_A          266 RFLVVQPQKRYTAEEALAHPFFQQYVV  292 (298)
T ss_dssp             HHCCSSGGGSCCHHHHTTSGGGCTTC-
T ss_pred             HHccCCcccCCCHHHHHhChHhhhccc
Confidence            999999999999999999999998764

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=1.9e-43  Score=375.09  Aligned_cols=272  Identities=18%  Similarity=0.224  Sum_probs=210.3

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      -..+++|++.+.||+|+||    .||+|++..     +++.||||++....    ..+.+.+|+.++++++      |||
T Consensus        21 ~~~~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~------h~~   85 (331)
T 4aaa_A           21 FQSMEKYENLGLVGEGSYG----MVMKCRNKD-----TGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLR------HEN   85 (331)
T ss_dssp             CBCGGGEEEEEEGGGGTTS----SEEEEEETT-----TCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCC------CTT
T ss_pred             hhhhhhheeeeEEeecCCE----EEEEEEECC-----CCceEEEEEEecCCCchHHHHHHHHHHHHHhhCC------CCC
Confidence            3456899999999999999    999999998     79999999986532    2345678999999995      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     ..+..|+||| |+++++|.+++...+         .+++                    ..++.++
T Consensus        86 iv~~~~~~~-----~~~~~~lv~e-~~~~~~l~~~~~~~~---------~~~~--------------------~~~~~~~  130 (331)
T 4aaa_A           86 LVNLLEVCK-----KKKRWYLVFE-FVDHTILDDLELFPN---------GLDY--------------------QVVQKYL  130 (331)
T ss_dssp             BCCEEEEEE-----ETTEEEEEEE-CCSEEHHHHHHHSTT---------CCCH--------------------HHHHHHH
T ss_pred             EeeEEEEee-----cCCEEEEEEe-cCCcchHHHHHhhcc---------CCCH--------------------HHHHHHH
Confidence            999999998     7789999999 999988888876543         3444                    4578899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHH
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      .||+.||.|||++||+||||||+|||++. ++.+||+|||++.....         +.+.|+|||++.+...++.++|||
T Consensus       131 ~qi~~~l~~LH~~~ivH~dlkp~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~  209 (331)
T 4aaa_A          131 FQIINGIGFCHSHNIIHRDIKPENILVSQ-SGVVKLCDFGFARTLAAPGEVYDDEVATRWYRAPELLVGDVKYGKAVDVW  209 (331)
T ss_dssp             HHHHHHHHHHHHTTCCCCCCCGGGEEECT-TSCEEECCCTTC------------CCCCCTTCCHHHHTTCTTCCTHHHHH
T ss_pred             HHHHHHHHHHHHCCEEccCcChheEEEcC-CCcEEEEeCCCceeecCCccccCCCcCCccccCcccccCCCCcchHHHHH
Confidence            99999999999999999999999999998 89999999999976533         236799999777766799999999


Q ss_pred             HHHHHHHHHHhCCCCChhh---hhhhhhhhccCCChhHHHHHHHHHh--ccC-CCC---CCCCcccccCCCHHHHHHHHH
Q 005958          309 CVGFMMAKMVLRELMDPLI---FTKFKSFLTKGIDPSCLREFLLQVL--NRN-SSS---GNTGFQILDRNWGAGWNLLSL  379 (667)
Q Consensus       309 SLGviLyemltG~~PF~~~---~~~~~~~~~~g~~~~~l~~~~~~~~--~~~-~~~---~~~~~~~~~~~s~e~~dLI~~  379 (667)
                      ||||++|+|++|++||...   .....+....+..............  ... .+.   ........+.+++++++||.+
T Consensus       210 slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  289 (331)
T 4aaa_A          210 AIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKK  289 (331)
T ss_dssp             HHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHCGGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhccccccccCccccccchhhhcccchhHHHHHHHHH
Confidence            9999999999999999732   2233333333433333333222111  000 000   000111234678999999999


Q ss_pred             hhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          380 LLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       380 ~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      ||+.||++|||++|+|+||||+...
T Consensus       290 ~L~~dP~~Rpt~~ell~hp~f~~~~  314 (331)
T 4aaa_A          290 CLHIDPDKRPFCAELLHHDFFQMDG  314 (331)
T ss_dssp             HTCSSGGGSCCGGGGGGSHHHHGGG
T ss_pred             HhccCcccCCCHHHHhcCchhccCC
Confidence            9999999999999999999997743

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=3.9e-43  Score=364.80  Aligned_cols=251  Identities=19%  Similarity=0.181  Sum_probs=200.1

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      .++|++.+.||+|+||    .||+|.+..     +++.||+|++....   ..+.+.+|++++++++      ||||+++
T Consensus        21 ~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~------hp~iv~~   85 (285)
T 3is5_A           21 DDLFIFKRKLGSGAFG----DVHLVEERS-----SGLERVIKTINKDRSQVPMEQIEAEIEVLKSLD------HPNIIKI   85 (285)
T ss_dssp             HHHEEEEEEEEECSSC----EEEEEEETT-----TCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCC------CTTBCCE
T ss_pred             hhheeecceeccCCCe----EEEEEEEcc-----CCceEEEEEeeccccchhHHHHHHHHHHHHhCC------CchHHhH
Confidence            4789999999999999    999999987     79999999997643   2366789999999994      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     +.+..++||| |+++|+|.+++.....     ....+++                    ..++.++.||+
T Consensus        86 ~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~~-----~~~~~~~--------------------~~~~~i~~qi~  134 (285)
T 3is5_A           86 FEVFE-----DYHNMYIVME-TCEGGELLERIVSAQA-----RGKALSE--------------------GYVAELMKQMM  134 (285)
T ss_dssp             EEEEE-----CSSEEEEEEC-CCSCCBHHHHHHHHHH-----HTCCCCH--------------------HHHHHHHHHHH
T ss_pred             HHhee-----cCCeEEEEEE-eCCCCcHHHHHHhhhh-----cccCCCH--------------------HHHHHHHHHHH
Confidence            99998     7889999999 9999999999865310     0113444                    56788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcC--CCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISP--VDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~--~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      .||.|||++||+||||||+|||++.  .++.+||+|||++..+...        .+.|+|||++.  ..++.++||||||
T Consensus       135 ~~L~~LH~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~--~~~~~~~Di~slG  212 (285)
T 3is5_A          135 NALAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEHSTNAAGTALYMAPEVFK--RDVTFKCDIWSAG  212 (285)
T ss_dssp             HHHHHHHHTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC----------CTTGGGCCHHHHT--TCCCHHHHHHHHH
T ss_pred             HHHHHHHhCCEEECCCCHHHEEEecCCCCCCEEEEeeecceecCCcccCcCcccccCcCChHHhc--cCCCcccCeehHH
Confidence            9999999999999999999999954  1578999999999765432        36799999653  4589999999999


Q ss_pred             HHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH
Q 005958          312 FMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC  391 (667)
Q Consensus       312 viLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa  391 (667)
                      |++|+|++|+.||..            ...........   ......    .......++++.+||.+||+.||++|||+
T Consensus       213 ~il~~ll~g~~pf~~------------~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~li~~~L~~dP~~Rps~  273 (285)
T 3is5_A          213 VVMYFLLTGCLPFTG------------TSLEEVQQKAT---YKEPNY----AVECRPLTPQAVDLLKQMLTKDPERRPSA  273 (285)
T ss_dssp             HHHHHHHHSSCSSCC------------SSHHHHHHHHH---HCCCCC----CC--CCCCHHHHHHHHHHTCSCTTTSCCH
T ss_pred             HHHHHHHhCCCCCCC------------CCHHHHHhhhc---cCCccc----ccccCcCCHHHHHHHHHHccCChhhCcCH
Confidence            999999999999852            22222222211   111110    11123468899999999999999999999


Q ss_pred             HHHHcCCCCCC
Q 005958          392 LDALRHPFLCG  402 (667)
Q Consensus       392 ~elL~HPwf~~  402 (667)
                      .|+|+||||++
T Consensus       274 ~e~l~hp~f~~  284 (285)
T 3is5_A          274 AQVLHHEWFKQ  284 (285)
T ss_dssp             HHHHTSGGGGC
T ss_pred             HHHhcCHHhhc
Confidence            99999999986

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=1.3e-43  Score=383.47  Aligned_cols=273  Identities=19%  Similarity=0.244  Sum_probs=199.2

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      .++|++++.||+|+||    .||+|.+..     +++.||||++...    ...+.+.+|+.+|+.++      ||||++
T Consensus        28 ~~~y~~~~~lG~G~~g----~V~~a~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~------hpnIv~   92 (367)
T 2fst_X           28 PERYQNLSPVGSGAYG----SVCAAFDTK-----TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMK------HENVIG   92 (367)
T ss_dssp             ETTEEEEEECC----C----CEEEEEETT-----TTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCC------CTTBCC
T ss_pred             CCceEEeeEEeecCCe----EEEEEEECC-----CCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCC------CCCCCc
Confidence            3889999999999999    999999988     8999999998642    23456689999999994      999999


Q ss_pred             EEEEEEecc-cCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          161 VHGYVSSHT-TSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       161 l~~~~~~~~-~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      +++++.... ......+|+||| ++++ +|.+++...          .+++                    ..++.++.|
T Consensus        93 ~~~~~~~~~~~~~~~~~~lv~e-~~~~-~L~~~~~~~----------~l~~--------------------~~~~~i~~q  140 (367)
T 2fst_X           93 LLDVFTPARSLEEFNDVYLVTH-LMGA-DLNNIVKCQ----------KLTD--------------------DHVQFLIYQ  140 (367)
T ss_dssp             CSEEECSCSSGGGCCCCEEEEE-CCCE-ECC-----C----------CCCH--------------------HHHHHHHHH
T ss_pred             EEEEEecCCccccCCeEEEEec-ccCC-CHHHHHhcC----------CCCH--------------------HHHHHHHHH
Confidence            999997321 113367899999 8864 999988752          3554                    457889999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC------CCCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE------DGPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~------~~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      |+.||.|||++||+||||||+|||++. ++.+||+|||+|+....      +.+.|+|||++.+...|+.++|||||||+
T Consensus       141 i~~aL~~LH~~givH~Dlkp~NIll~~-~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~i  219 (367)
T 2fst_X          141 ILRGLKYIHSADIIHRDLKPSNLAVNE-DCELKILDFGLARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCI  219 (367)
T ss_dssp             HHHHHHHHHHTTCCCCCCCGGGEEECT-TCCEEECC---------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHCCeeeCCCCHhhEEECC-CCCEEEeeccccccccccCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHH
Confidence            999999999999999999999999998 89999999999986543      23789999987776789999999999999


Q ss_pred             HHHHHhCCCCChh---hhhhhhhhhccCCChhHHHHHH-----HHHhccCCCCCCCCc-ccccCCCHHHHHHHHHhhhcC
Q 005958          314 MAKMVLRELMDPL---IFTKFKSFLTKGIDPSCLREFL-----LQVLNRNSSSGNTGF-QILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       314 LyemltG~~PF~~---~~~~~~~~~~~g~~~~~l~~~~-----~~~~~~~~~~~~~~~-~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      +|||++|++||++   ..+...+....|.+.......+     ..............+ ...+..++++++||.+||++|
T Consensus       220 l~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~d  299 (367)
T 2fst_X          220 MAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLD  299 (367)
T ss_dssp             HHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHTTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSS
T ss_pred             HHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCC
Confidence            9999999999984   2344444455555543322110     111111111111111 234567899999999999999


Q ss_pred             cCCCCCHHHHHcCCCCCCCCC
Q 005958          385 PSKRISCLDALRHPFLCGPRW  405 (667)
Q Consensus       385 P~kRpSa~elL~HPwf~~~~~  405 (667)
                      |++|||++|+|+||||+....
T Consensus       300 P~~R~t~~e~L~hp~~~~~~~  320 (367)
T 2fst_X          300 SDKRITAAQALAHAYFAQYHD  320 (367)
T ss_dssp             GGGSCCHHHHHTSGGGTTTCC
T ss_pred             cccCcCHHHHhcChhhhhccC
Confidence            999999999999999998654

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=2.8e-43  Score=396.06  Aligned_cols=253  Identities=17%  Similarity=0.202  Sum_probs=205.6

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---------------hHHHHHHHHHHHHHHh
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---------------AQRRGRRAIEVLKKLV  148 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---------------~~~~~~rEi~iL~~L~  148 (667)
                      ..++|+++++||+|+||    +||+|.++.     +++.||||++....               ..+.+.+|+.+|++++
T Consensus        34 i~~~Y~~~~~lG~G~~g----~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~  104 (504)
T 3q5i_A           34 IGESYFKVRKLGSGAYG----EVLLCKEKN-----GHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLD  104 (504)
T ss_dssp             GGGTEEEEEEEEC--CE----EEEEEEETT-----TCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCC
T ss_pred             cccceEEEeEecccCCe----EEEEEEECC-----CCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCC
Confidence            35789999999999999    999999998     89999999997532               2356789999999994


Q ss_pred             hccCCCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccc
Q 005958          149 RRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASR  228 (667)
Q Consensus       149 ~~~~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~  228 (667)
                            ||||+++++++.     +...+|+||| ||++|+|.+++...+         .+++                  
T Consensus       105 ------hpniv~~~~~~~-----~~~~~~lv~e-~~~gg~L~~~l~~~~---------~~~~------------------  145 (504)
T 3q5i_A          105 ------HPNIIKLFDVFE-----DKKYFYLVTE-FYEGGELFEQIINRH---------KFDE------------------  145 (504)
T ss_dssp             ------CTTBCCEEEEEE-----CSSEEEEEEE-CCTTCBHHHHHHHHS---------CCCH------------------
T ss_pred             ------CCCCCeEEEEEE-----cCCEEEEEEe-cCCCCcHHHHHHHcC---------CCCH------------------
Confidence                  999999999999     8889999999 999999999998754         4565                  


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCC--CeEEEeeecccccccCC--------CCCCCCcccccCC
Q 005958          229 QLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVD--RHIKVGILGNAADFYED--------GPNNSSPDSNMDR  298 (667)
Q Consensus       229 ~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~--~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~  298 (667)
                        ..++.++.||+.||.|||++||+||||||+|||++..+  ..+||+|||+|......        .+.|+|||++.  
T Consensus       146 --~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~--  221 (504)
T 3q5i_A          146 --CDAANIMKQILSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEVLK--  221 (504)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESSTTCCSSEEECCCTTCEECCTTSCBCCCCSCTTTCCHHHHT--
T ss_pred             --HHHHHHHHHHHHHHHHHHHCCeEeCCCcHHHEEEecCCCCccEEEEECCCCEEcCCCCccccccCCcCCCCHHHhc--
Confidence              45678999999999999999999999999999999722  26999999999865433        37899999654  


Q ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHH
Q 005958          299 RQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLS  378 (667)
Q Consensus       299 ~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~  378 (667)
                      ..|+.++||||+||++|+|++|.+||.            +.....+...+.   .....   ...+.+..+++++++||.
T Consensus       222 ~~~~~~~DiwslG~il~~ll~g~~pf~------------~~~~~~~~~~i~---~~~~~---~~~~~~~~~s~~~~~li~  283 (504)
T 3q5i_A          222 KKYNEKCDVWSCGVIMYILLCGYPPFG------------GQNDQDIIKKVE---KGKYY---FDFNDWKNISDEAKELIK  283 (504)
T ss_dssp             TCBCTHHHHHHHHHHHHHHHHSSCSSC------------CSSHHHHHHHHH---HCCCC---CCHHHHTTSCHHHHHHHH
T ss_pred             cCCCchHHHHHHHHHHHHHHhCCCCCC------------CCCHHHHHHHHH---cCCCC---CCccccCCCCHHHHHHHH
Confidence            458999999999999999999999995            223332222222   21111   112334678899999999


Q ss_pred             HhhhcCcCCCCCHHHHHcCCCCCCCCCC
Q 005958          379 LLLATKPSKRISCLDALRHPFLCGPRWR  406 (667)
Q Consensus       379 ~~L~~DP~kRpSa~elL~HPwf~~~~~~  406 (667)
                      +||++||.+|||++|+|+||||+.....
T Consensus       284 ~~L~~dp~~R~t~~e~l~h~~~~~~~~~  311 (504)
T 3q5i_A          284 LMLTYDYNKRCTAEEALNSRWIKKYANN  311 (504)
T ss_dssp             HHTCSSTTTSCCHHHHHTSHHHHHTCCC
T ss_pred             HHcCCChhHCCCHHHHhcCHhhhhchhc
Confidence            9999999999999999999999876543

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=8.5e-44  Score=379.78  Aligned_cols=241  Identities=22%  Similarity=0.289  Sum_probs=203.6

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----------hHHHHHHHHHHHHHHhhccCCC
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----------AQRRGRRAIEVLKKLVRRRLMY  154 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----------~~~~~~rEi~iL~~L~~~~~~~  154 (667)
                      .++|++.+.||+|+||    .||+|++..     +++.||||++....          ....+.+|+.+|++++      
T Consensus        23 ~~~y~~~~~lG~G~~g----~Vy~a~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~------   87 (335)
T 3dls_A           23 SQKYSTMSPLGSGAFG----FVWTAVDKE-----KNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVE------   87 (335)
T ss_dssp             HHHEEEEEECSSSSSC----SEEEEEETT-----TTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCC------
T ss_pred             ccceEEEeEEEecCCE----EEEEEEECC-----CCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCC------
Confidence            4789999999999999    999999998     89999999997643          1224578999999994      


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCC-CHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSF-SLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLI  233 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~G-sL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i  233 (667)
                      ||||+++++++.     +.+.+++||| |+.+| +|.+++....         .+++                    ..+
T Consensus        88 h~~Iv~~~~~~~-----~~~~~~lv~e-~~~~g~~l~~~~~~~~---------~l~~--------------------~~~  132 (335)
T 3dls_A           88 HANIIKVLDIFE-----NQGFFQLVME-KHGSGLDLFAFIDRHP---------RLDE--------------------PLA  132 (335)
T ss_dssp             CTTBCCEEEEEE-----CSSEEEEEEE-CCTTSCBHHHHHHTCC---------CCCH--------------------HHH
T ss_pred             CCCEeeEEEEEe-----eCCEEEEEEE-eCCCCccHHHHHHhcC---------CCCH--------------------HHH
Confidence            999999999999     8889999999 87666 9999998754         4554                    457


Q ss_pred             HHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchh
Q 005958          234 RLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAF  305 (667)
Q Consensus       234 ~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ks  305 (667)
                      +.++.||+.||.|||++||+||||||+|||++. ++.+||+|||++......        .+.|+|||++.+...++.++
T Consensus       133 ~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~-~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~  211 (335)
T 3dls_A          133 SYIFRQLVSAVGYLRLKDIIHRDIKDENIVIAE-DFTIKLIDFGSAAYLERGKLFYTFCGTIEYCAPEVLMGNPYRGPEL  211 (335)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECSCCSGGGEEECT-TSCEEECCCTTCEECCTTCCBCEECSCGGGCCHHHHTTCCBCSHHH
T ss_pred             HHHHHHHHHHHHHHHhCCeEEeccCHHHEEEcC-CCcEEEeecccceECCCCCceeccCCCccccChhhhcCCCCCCCcc
Confidence            789999999999999999999999999999998 899999999999866543        36899999776666568999


Q ss_pred             hHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCc
Q 005958          306 DMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       306 DIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      |||||||++|+|++|..||........                            ........+++++++||.+||++||
T Consensus       212 DiwslG~il~el~~g~~pf~~~~~~~~----------------------------~~~~~~~~~~~~l~~li~~~L~~dP  263 (335)
T 3dls_A          212 EMWSLGVTLYTLVFEENPFCELEETVE----------------------------AAIHPPYLVSKELMSLVSGLLQPVP  263 (335)
T ss_dssp             HHHHHHHHHHHHHHSSCSCSSGGGGTT----------------------------TCCCCSSCCCHHHHHHHHHHTCSSG
T ss_pred             cchhHHHHHHHHHhCCCchhhHHHHHh----------------------------hccCCCcccCHHHHHHHHHHccCCh
Confidence            999999999999999999964221110                            0112233478899999999999999


Q ss_pred             CCCCCHHHHHcCCCCCCCC
Q 005958          386 SKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       386 ~kRpSa~elL~HPwf~~~~  404 (667)
                      ++|||++|+|+||||++..
T Consensus       264 ~~Rps~~ell~hp~~~~~~  282 (335)
T 3dls_A          264 ERRTTLEKLVTDPWVTQPV  282 (335)
T ss_dssp             GGSCCHHHHHHCTTTTCCC
T ss_pred             hhCcCHHHHhcCccccCCc
Confidence            9999999999999998754

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=2.7e-43  Score=362.91  Aligned_cols=251  Identities=16%  Similarity=0.168  Sum_probs=200.9

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcc----hhhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS----VQAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~----~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      .++|++.+.||+|+||    .||+|.+..     +++.||||++..    ........+|+.++..+.     .||||++
T Consensus        10 ~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~-----~h~~iv~   75 (289)
T 1x8b_A           10 TTEFHELEKIGSGEFG----SVFKCVKRL-----DGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLG-----QHSHVVR   75 (289)
T ss_dssp             HHHEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSC-----SCTTBCC
T ss_pred             cchhhhhhhhcCCCce----EEEEEEEcC-----CCceEEEEEecccccccHHHHHHHHHHHHHHHhC-----CCCCeee
Confidence            4789999999999999    999999997     799999999975    223456788999999984     5999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     +.+..++||| |+++|+|.+++......     ...+++                    ..++.++.||
T Consensus        76 ~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~~~-----~~~~~~--------------------~~~~~i~~qi  124 (289)
T 1x8b_A           76 YFSAWA-----EDDHMLIQNE-YCNGGSLADAISENYRI-----MSYFKE--------------------AELKDLLLQV  124 (289)
T ss_dssp             EEEEEE-----ETTEEEEEEE-CCTTCBHHHHHHHHHHH-----TCCCCH--------------------HHHHHHHHHH
T ss_pred             eeeeee-----cCCeEEEEEE-ecCCCcHHHHHHhhccc-----ccCCCH--------------------HHHHHHHHHH
Confidence            999998     7789999999 99999999999864200     013444                    5678899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcC------------------CCCeEEEeeecccccccCC-----CCCCCCcccccC
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISP------------------VDRHIKVGILGNAADFYED-----GPNNSSPDSNMD  297 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~------------------~~~~vKL~DFGlA~~~~~~-----~~~Y~APE~l~~  297 (667)
                      +.||.|||++||+||||||+|||++.                  ....+||+|||.+......     .+.|+|||++.+
T Consensus       125 ~~al~~lH~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~gt~~y~aPE~~~~  204 (289)
T 1x8b_A          125 GRGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSPQVEEGDSRFLANEVLQE  204 (289)
T ss_dssp             HHHHHHHHHTTEECSCCSGGGEEEC--------------------CCCEEECCCTTCEETTCSCCCCCCGGGCCHHHHTT
T ss_pred             HHHHHHHHhCCEeecCCCHHHEEEcCCCCCcccccccccccccCCceEEEEcccccccccCCccccCCCccccChhHhcC
Confidence            99999999999999999999999984                  1347999999999876543     367999997776


Q ss_pred             CCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHH
Q 005958          298 RRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLL  377 (667)
Q Consensus       298 ~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI  377 (667)
                      ...++.++|||||||++|+|++|.+||....              .....    .....      ......+++++.+||
T Consensus       205 ~~~~~~~~Di~slG~il~~l~~~~~~~~~~~--------------~~~~~----~~~~~------~~~~~~~~~~~~~li  260 (289)
T 1x8b_A          205 NYTHLPKADIFALALTVVCAAGAEPLPRNGD--------------QWHEI----RQGRL------PRIPQVLSQEFTELL  260 (289)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHTTCCCCCSSSH--------------HHHHH----HTTCC------CCCSSCCCHHHHHHH
T ss_pred             CCCCCchhhHHHHHHHHHHHhcCCCCCcchh--------------HHHHH----HcCCC------CCCCcccCHHHHHHH
Confidence            6677889999999999999999998764211              11111    11111      123356789999999


Q ss_pred             HHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          378 SLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       378 ~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      .+||+.||++|||+.|+|+||||.+..
T Consensus       261 ~~~l~~dp~~Rps~~~ll~h~~~~~~~  287 (289)
T 1x8b_A          261 KVMIHPDPERRPSAMALVKHSVLLSAS  287 (289)
T ss_dssp             HHHTCSSGGGSCCHHHHHTCTTC----
T ss_pred             HHHhCCCcccCCCHHHHhhChHhhhhc
Confidence            999999999999999999999998754

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.7e-43  Score=380.24  Aligned_cols=261  Identities=16%  Similarity=0.253  Sum_probs=209.2

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh------hHHHHHHHHHHHHHHhhccCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ------AQRRGRRAIEVLKKLVRRRLM  153 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~------~~~~~~rEi~iL~~L~~~~~~  153 (667)
                      ...+.+++|++.+.||+|+||    .||+|++...  ..+++.||||+++...      ..+.+.+|+++|++++     
T Consensus        48 ~~~~~~~~y~~~~~lG~G~~g----~Vy~~~~~~~--~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-----  116 (355)
T 1vzo_A           48 AEKVGIENFELLKVLGTGAYG----KVFLVRKISG--HDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIR-----  116 (355)
T ss_dssp             CCCCCGGGEEEEEEEEETTTE----EEEEEEECSS--TTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHH-----
T ss_pred             cccccccceEEEEEeccCCCE----EEEEEEEccc--CCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHcc-----
Confidence            345667899999999999999    9999998531  1278999999987521      2345678999999997     


Q ss_pred             CCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHH
Q 005958          154 YHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLI  233 (667)
Q Consensus       154 ~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i  233 (667)
                      +||||+++++++.     ..+.+|+||| |+++|+|.+++...+         .+++                    ..+
T Consensus       117 ~h~~iv~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~  161 (355)
T 1vzo_A          117 QSPFLVTLHYAFQ-----TETKLHLILD-YINGGELFTHLSQRE---------RFTE--------------------HEV  161 (355)
T ss_dssp             TCTTBCCEEEEEE-----ETTEEEEEEC-CCCSCBHHHHHHHHS---------CCCH--------------------HHH
T ss_pred             CCCceeEEEEEEe-----eCceEEEEee-cCCCCCHHHHHHHcC---------CCCH--------------------HHH
Confidence            6999999999998     7789999999 999999999998754         4554                    457


Q ss_pred             HHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC----------CCCCCCCcccccC-CCCCC
Q 005958          234 RLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE----------DGPNNSSPDSNMD-RRQMM  302 (667)
Q Consensus       234 ~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~----------~~~~Y~APE~l~~-~~~ys  302 (667)
                      +.++.||+.||.|||++||+||||||+|||++. ++.+||+|||+++.+..          +.+.|+|||++.+ ...++
T Consensus       162 ~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~-~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  240 (355)
T 1vzo_A          162 QIYVGEIVLALEHLHKLGIIYRDIKLENILLDS-NGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHD  240 (355)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECT-TSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---C
T ss_pred             HHHHHHHHHHHHHHHHCCcccCCCCHHHEEECC-CCcEEEeeCCCCeecccCCCCcccCcccCcCccChhhhcCCCCCCC
Confidence            889999999999999999999999999999998 89999999999975432          3478999997764 34578


Q ss_pred             chhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhh
Q 005958          303 IAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLA  382 (667)
Q Consensus       303 ~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~  382 (667)
                      .++|||||||++|||++|+.||....           .................       +....+++.+++||.+||.
T Consensus       241 ~~~DvwslG~il~ell~g~~pf~~~~-----------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~li~~~L~  302 (355)
T 1vzo_A          241 KAVDWWSLGVLMYELLTGASPFTVDG-----------EKNSQAEISRRILKSEP-------PYPQEMSALAKDLIQRLLM  302 (355)
T ss_dssp             THHHHHHHHHHHHHHHHSSCTTSCTT-----------SCCCHHHHHHHHHHCCC-------CCCTTSCHHHHHHHHHHTC
T ss_pred             chhhHHHHHHHHHHHHHCCCCCccCC-----------ccchHHHHHHHHhccCC-------CCCcccCHHHHHHHHHHhh
Confidence            99999999999999999999985211           11112222222222211       2335678899999999999


Q ss_pred             cCcCCCC-----CHHHHHcCCCCCCCCC
Q 005958          383 TKPSKRI-----SCLDALRHPFLCGPRW  405 (667)
Q Consensus       383 ~DP~kRp-----Sa~elL~HPwf~~~~~  405 (667)
                      .||++||     |++|+++||||+...|
T Consensus       303 ~dP~~R~~~~~~s~~ell~h~~f~~~~~  330 (355)
T 1vzo_A          303 KDPKKRLGCGPRDADEIKEHLFFQKINW  330 (355)
T ss_dssp             SSGGGSTTSSTTTHHHHHTSGGGTTCCH
T ss_pred             hCHHHhcCCCCCCHHHHHcCcchhcCCh
Confidence            9999999     9999999999998774

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=1.4e-43  Score=403.34  Aligned_cols=256  Identities=15%  Similarity=0.191  Sum_probs=210.5

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      +..++|++.+.||+|+||    .||+|+++.     +++.||||++.+..     ....+.+|+++|+.+      +|||
T Consensus       181 ~~~~~f~~~~~LG~G~fG----~Vy~a~~~~-----tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l------~hp~  245 (576)
T 2acx_A          181 VTKNTFRQYRVLGKGGFG----EVCACQVRA-----TGKMYACKKLEKKRIKKRKGEAMALNEKQILEKV------NSRF  245 (576)
T ss_dssp             CCGGGEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHC------CCTT
T ss_pred             ccccceEEEEEEeeCCCE----EEEEEEECC-----CCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHc------CCCC
Confidence            556889999999999999    999999998     89999999997632     234568999999999      4999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     +.+.+|+||| |+++|+|.+++...+.       ..+++                    ..++.|+
T Consensus       246 Iv~l~~~~~-----~~~~l~lVmE-y~~gg~L~~~l~~~~~-------~~l~e--------------------~~~~~i~  292 (576)
T 2acx_A          246 VVSLAYAYE-----TKDALCLVLT-LMNGGDLKFHIYHMGQ-------AGFPE--------------------ARAVFYA  292 (576)
T ss_dssp             BCCEEEEEE-----CSSEEEEEEC-CCCSCBHHHHHHSSSS-------CCCCH--------------------HHHHHHH
T ss_pred             EeeEEEEEe-----eCCEEEEEEE-cCCCCcHHHHHHhcCC-------CCCCH--------------------HHHHHHH
Confidence            999999999     7889999999 9999999999986431       13554                    4578899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHH
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRC  309 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWS  309 (667)
                      .||+.||.|||++||+||||||+|||++. ++++||+|||+|+.....        .+.|+|||++. ...|+.++||||
T Consensus       293 ~qIl~aL~yLH~~gIvHrDLKPeNILld~-~g~vKL~DFGla~~~~~~~~~~~~~GT~~Y~APEvl~-~~~~~~~~DiwS  370 (576)
T 2acx_A          293 AEICCGLEDLHRERIVYRDLKPENILLDD-HGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVK-NERYTFSPDWWA  370 (576)
T ss_dssp             HHHHHHHHHHHHTTEECCCCCGGGEEECT-TSCEEECCCTTCEECCTTCCEECCCSCGGGCCHHHHT-TCEESSHHHHHH
T ss_pred             HHHHHHHHHHHHCCEeccCCchheEEEeC-CCCeEEEecccceecccCccccccCCCccccCHHHHc-CCCCCccchHHH
Confidence            99999999999999999999999999998 899999999999866433        36799999655 456899999999


Q ss_pred             HHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          310 VGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       310 LGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      |||++|||++|++||.....        ......+...+   ....       ......+++++++||.+||+.||++||
T Consensus       371 LGvilyeLltG~~PF~~~~~--------~~~~~~i~~~i---~~~~-------~~~p~~~s~~~~dLI~~lL~~dP~~R~  432 (576)
T 2acx_A          371 LGCLLYEMIAGQSPFQQRKK--------KIKREEVERLV---KEVP-------EEYSERFSPQARSLCSQLLCKDPAERL  432 (576)
T ss_dssp             HHHHHHHHHHSSCSSSCSSS--------CCCHHHHHHHH---HHCC-------CCCCTTSCHHHHHHHHHHTCSSGGGST
T ss_pred             HHHHHHHHHhCCCCCccccc--------chhHHHHHHHh---hccc-------ccCCccCCHHHHHHHHHhccCCHHHcC
Confidence            99999999999999963210        01122222222   2111       122356789999999999999999999


Q ss_pred             -----CHHHHHcCCCCCCCCCC
Q 005958          390 -----SCLDALRHPFLCGPRWR  406 (667)
Q Consensus       390 -----Sa~elL~HPwf~~~~~~  406 (667)
                           +++|+++||||++.+|.
T Consensus       433 g~~~~sa~eil~HpfF~~i~w~  454 (576)
T 2acx_A          433 GCRGGSAREVKEHPLFKKLNFK  454 (576)
T ss_dssp             TCSSSHHHHHHTSGGGTTCCHH
T ss_pred             CCCCCCHHHHHhChhhccCCHH
Confidence                 89999999999998863

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=2.1e-43  Score=365.70  Aligned_cols=257  Identities=20%  Similarity=0.268  Sum_probs=210.4

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMY  154 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~  154 (667)
                      ...+.+++|++.+.||+|+||    .||+|.+..     +++.||||++....     ..+.+.+|+++++.++      
T Consensus         8 ~~~~~~~~y~~~~~lg~G~~g----~Vy~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~------   72 (284)
T 2vgo_A            8 KRKFTIDDFDIGRPLGKGKFG----NVYLAREKQ-----NKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLR------   72 (284)
T ss_dssp             --CCCGGGEEEEEEEEECSSE----EEEEEEETT-----TTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCC------
T ss_pred             ccchhhhhceeeheecCCCCe----EEEEEEEcC-----CCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCC------
Confidence            345677999999999999999    999999987     78999999997532     2356789999999994      


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      ||||+++++++.     +.+..|+||| |+++|+|.+++...+         .+++                    ..++
T Consensus        73 h~~i~~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~  117 (284)
T 2vgo_A           73 HPNILRMYNYFH-----DRKRIYLMLE-FAPRGELYKELQKHG---------RFDE--------------------QRSA  117 (284)
T ss_dssp             CTTBCCEEEEEE-----CSSEEEEEEC-CCTTEEHHHHHHHHS---------SCCH--------------------HHHH
T ss_pred             CCCEeeEEEEEE-----cCCEEEEEEE-eCCCCcHHHHHHhcC---------CCCH--------------------HHHH
Confidence            999999999998     7889999999 999999999998754         4554                    4577


Q ss_pred             HHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-------CCCCCCCcccccCCCCCCchhhH
Q 005958          235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-------DGPNNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-------~~~~Y~APE~l~~~~~ys~ksDI  307 (667)
                      .++.||+.||.|||++||+||||||+||+++. ++.+||+|||++.....       +.+.|+|||++. ...++.++||
T Consensus       118 ~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di  195 (284)
T 2vgo_A          118 TFMEELADALHYCHERKVIHRDIKPENLLMGY-KGELKIADFGWSVHAPSLRRRTMCGTLDYLPPEMIE-GKTHDEKVDL  195 (284)
T ss_dssp             HHHHHHHHHHHHHHTTTEECCCCSGGGEEECT-TCCEEECCCTTCEECSSSCBCCCCSCGGGCCHHHHT-TCCBCTTHHH
T ss_pred             HHHHHHHHHHHHHHHCCceecCCCHHHEEEcC-CCCEEEecccccccCcccccccccCCCCcCCHHHhc-cCCCCcccch
Confidence            89999999999999999999999999999998 89999999999875543       236799999554 4568999999


Q ss_pred             HHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          308 RCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       308 WSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      |||||++|+|++|.+||...            .......   .+...       .......+++++++||.+||+.||++
T Consensus       196 ~slG~il~~l~~g~~pf~~~------------~~~~~~~---~~~~~-------~~~~~~~~~~~~~~li~~~l~~~p~~  253 (284)
T 2vgo_A          196 WCAGVLCYEFLVGMPPFDSP------------SHTETHR---RIVNV-------DLKFPPFLSDGSKDLISKLLRYHPPQ  253 (284)
T ss_dssp             HHHHHHHHHHHHSSCTTCCS------------SHHHHHH---HHHTT-------CCCCCTTSCHHHHHHHHHHSCSSGGG
T ss_pred             hhHHHHHHHHHHCCCCCCCC------------CHhHHHH---HHhcc-------ccCCCCcCCHHHHHHHHHHhhcCHhh
Confidence            99999999999999998521            1111111   12111       12233567899999999999999999


Q ss_pred             CCCHHHHHcCCCCCCCCCCCCCc
Q 005958          388 RISCLDALRHPFLCGPRWRVDPS  410 (667)
Q Consensus       388 RpSa~elL~HPwf~~~~~~~~~~  410 (667)
                      |||++|+++||||+....+..|.
T Consensus       254 Rps~~~ll~h~~~~~~~~~~~p~  276 (284)
T 2vgo_A          254 RLPLKGVMEHPWVKANSRRVLPP  276 (284)
T ss_dssp             SCCHHHHHTCHHHHHHCCCCCCC
T ss_pred             CCCHHHHhhCHHHHhhccccCCC
Confidence            99999999999998766544443

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=3.8e-43  Score=397.96  Aligned_cols=257  Identities=17%  Similarity=0.207  Sum_probs=210.0

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-----HHHHHHHHHHHHHHhhccCCCCCc
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-----QRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-----~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      +..++|++.+.||+|+||    .||+|+++.     +++.||||++.+...     ...+.+|+.+|++++      |||
T Consensus       182 ~~~~~f~~~~~LG~G~fG----~Vy~a~~~~-----tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~------hp~  246 (543)
T 3c4z_A          182 MGEDWFLDFRVLGRGGFG----EVFACQMKA-----TGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVH------SRF  246 (543)
T ss_dssp             CCGGGEEEEEEEEECSSS----EEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCC------CTT
T ss_pred             CChhheEEEEEEeeCCCe----EEEEEEECC-----CCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcC------CCC
Confidence            456899999999999999    999999987     899999999976422     245689999999994      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     ..+.+|+||| |++||+|.+++......     ...++|                    ..++.|+
T Consensus       247 Iv~l~~~~~-----~~~~l~lVmE-~~~gg~L~~~l~~~~~~-----~~~l~e--------------------~~~~~~~  295 (543)
T 3c4z_A          247 IVSLAYAFE-----TKTDLCLVMT-IMNGGDIRYHIYNVDED-----NPGFQE--------------------PRAIFYT  295 (543)
T ss_dssp             BCCEEEEEE-----CSSEEEEEEC-CCTTCBHHHHHHTSSTT-----SCSCCH--------------------HHHHHHH
T ss_pred             EeeEEEEEe-----eCCEEEEEEE-eccCCCHHHHHHHhhcc-----cccccH--------------------HHHHHHH
Confidence            999999999     7889999999 99999999999864311     113554                    4578899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHH
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      .||+.||.|||++||+||||||+|||++. ++++||+|||+|+....         +.+.|+|||++.+ ..|+.++|||
T Consensus       296 ~qi~~aL~~LH~~gIvHrDLKP~NILl~~-~g~vkL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~-~~~~~~~Diw  373 (543)
T 3c4z_A          296 AQIVSGLEHLHQRNIIYRDLKPENVLLDD-DGNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLG-EEYDFSVDYF  373 (543)
T ss_dssp             HHHHHHHHHHHHTTEECCCCCGGGEEECT-TSCEEECCCTTCEECCTTCCCBCCCCSCTTTSCHHHHTT-CCBCTHHHHH
T ss_pred             HHHHHHHHHHHHcCCcccCCChHHEEEeC-CCCEEEeecceeeeccCCCcccccccCCccccChhhhcC-CCCChHHhcC
Confidence            99999999999999999999999999998 89999999999976532         3378999996554 5699999999


Q ss_pred             HHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCC
Q 005958          309 CVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  388 (667)
Q Consensus       309 SLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kR  388 (667)
                      ||||++|||++|++||....           ......+....+....       ...+..+++++++||.+||+.||++|
T Consensus       374 SlGvilyelltG~~PF~~~~-----------~~~~~~~~~~~i~~~~-------~~~p~~~s~~~~~li~~lL~~dP~~R  435 (543)
T 3c4z_A          374 ALGVTLYEMIAARGPFRARG-----------EKVENKELKQRVLEQA-------VTYPDKFSPASKDFCEALLQKDPEKR  435 (543)
T ss_dssp             HHHHHHHHHHHSSCSSCCTT-----------CCCCHHHHHHHHHHCC-------CCCCTTSCHHHHHHHHHHSCSSGGGS
T ss_pred             cchHHHHHHHhCCCCCCCCc-----------cchhHHHHHHHHhhcc-------cCCCcccCHHHHHHHHHhccCCHhHC
Confidence            99999999999999995321           0111122222233221       12335678999999999999999999


Q ss_pred             CC-----HHHHHcCCCCCCCCC
Q 005958          389 IS-----CLDALRHPFLCGPRW  405 (667)
Q Consensus       389 pS-----a~elL~HPwf~~~~~  405 (667)
                      |+     ++++++||||++++|
T Consensus       436 ~~~~~~~a~ei~~Hpff~~i~w  457 (543)
T 3c4z_A          436 LGFRDGSCDGLRTHPLFRDISW  457 (543)
T ss_dssp             CCCBTTBSHHHHTSGGGTTCCH
T ss_pred             CCCcccCHHHHHcCccccCCCH
Confidence            96     589999999999886

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=1.1e-42  Score=371.09  Aligned_cols=271  Identities=21%  Similarity=0.261  Sum_probs=211.0

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      .++|++.+.||+|+||    .||+|.+..     +++.||||++....   ....+.+|+.++++++      ||||+++
T Consensus        10 ~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~------h~~iv~~   74 (353)
T 2b9h_A           10 SSDFQLKSLLGEGAYG----VVCSATHKP-----TGEIVAIKKIEPFDKPLFALRTLREIKILKHFK------HENIITI   74 (353)
T ss_dssp             CTTEEEEEEEEECSSE----EEEEEEETT-----TTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCC------CTTBCCE
T ss_pred             ccceEEeeEEcCCCCe----EEEEEEECC-----CCcEEEEEeecccccchHHHHHHHHHHHHHhCc------CCCcCCe
Confidence            4789999999999999    999999987     79999999997432   3345679999999994      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++...........|+||| |+++ +|.+++...          .+++                    ..++.++.||+
T Consensus        75 ~~~~~~~~~~~~~~~~lv~e-~~~~-~L~~~~~~~----------~~~~--------------------~~~~~~~~qi~  122 (353)
T 2b9h_A           75 FNIQRPDSFENFNEVYIIQE-LMQT-DLHRVISTQ----------MLSD--------------------DHIQYFIYQTL  122 (353)
T ss_dssp             EEECCCSCSTTCCCEEEEEC-CCSE-EHHHHHHHC----------CCCH--------------------HHHHHHHHHHH
T ss_pred             eeeecccccCccceEEEEEe-ccCc-cHHHHHhhc----------CCCH--------------------HHHHHHHHHHH
Confidence            99987443334578999999 9986 999999863          3554                    45788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-------------------CCCCCCCcccccCCCCCC
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-------------------DGPNNSSPDSNMDRRQMM  302 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-------------------~~~~Y~APE~l~~~~~ys  302 (667)
                      .||.|||++||+||||||+|||++. ++.+||+|||++.....                   +.+.|+|||++.....++
T Consensus       123 ~~L~~LH~~~ivH~Dlkp~Nil~~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  201 (353)
T 2b9h_A          123 RAVKVLHGSNVIHRDLKPSNLLINS-NCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYS  201 (353)
T ss_dssp             HHHHHHHHTTEECSCCCGGGEEECT-TCCEEECCCTTCEECC----------------CCCCCCGGGCCHHHHHSCCCCC
T ss_pred             HHHHHHHHCCeecCCCCHHHeEEcC-CCcEEEEecccccccccccccccCccccccchhhccccccccCCeeeccCCCcc
Confidence            9999999999999999999999998 89999999999986542                   235699999877777899


Q ss_pred             chhhHHHHHHHHHHHHhCCCCChhhh---hhhhhhhccCCCh----------hHHHHHHHHHhccCCCCCC-CCcccccC
Q 005958          303 IAFDMRCVGFMMAKMVLRELMDPLIF---TKFKSFLTKGIDP----------SCLREFLLQVLNRNSSSGN-TGFQILDR  368 (667)
Q Consensus       303 ~ksDIWSLGviLyemltG~~PF~~~~---~~~~~~~~~g~~~----------~~l~~~~~~~~~~~~~~~~-~~~~~~~~  368 (667)
                      .++|||||||++|+|++|++||.+..   +...++...|.+.          ....+++..    ...... ......+.
T Consensus       202 ~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  277 (353)
T 2b9h_A          202 RAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIGTPHSDNDLRCIESPRAREYIKS----LPMYPAAPLEKMFPR  277 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCSTTTTTTCCCHHHHHHHHT----SCCCCCCCHHHHSTT
T ss_pred             chhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCchhccccccccchhhHHhhc----ccCCCCcchhhhccc
Confidence            99999999999999999999997422   1222222222211          111122111    111011 11123457


Q ss_pred             CCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCCCCC
Q 005958          369 NWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPRWRV  407 (667)
Q Consensus       369 ~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~~~~  407 (667)
                      +++++++||.+||+.||++|||++|+|+||||+...+..
T Consensus       278 ~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~~~~  316 (353)
T 2b9h_A          278 VNPKGIDLLQRMLVFDPAKRITAKEALEHPYLQTYHDPN  316 (353)
T ss_dssp             SCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTCCTT
T ss_pred             CCHHHHHHHHHhcCcCcccCCCHHHHhcCccccccCCcc
Confidence            889999999999999999999999999999999877543

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=8e-44  Score=381.01  Aligned_cols=287  Identities=19%  Similarity=0.215  Sum_probs=201.1

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      ......+++|++.+.||+|+||    .||+|++..     +++.||||++.... ......+|++.++.+      .|||
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~l~~l------~h~n   80 (360)
T 3e3p_A           16 ERSRKEMDRFQVERMAGQGTFG----TVQLGKEKS-----TGMSVAIKKVIQDPRFRNRELQIMQDLAVL------HHPN   80 (360)
T ss_dssp             HHHHHHHTTEEEC--------------CEEEEETT-----TCCEEEEEEEECCTTCCCHHHHHHHHHHHH------CCTT
T ss_pred             hhchhhccceEEEEEEecCCCe----EEEEEEECC-----CCCEEEEEEEecCccccHHHHHHHHHHHhc------CCCC
Confidence            3445678999999999999999    999999987     79999999986532 223456777778888      4999


Q ss_pred             ceEEEEEEEeccc--CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          158 SMQVHGYVSSHTT--SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       158 Iv~l~~~~~~~~~--~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      |+++++++.....  .....+++||| |+++ +|.+.+.....     ....++                    ...++.
T Consensus        81 iv~~~~~~~~~~~~~~~~~~~~lv~e-~~~~-~l~~~~~~~~~-----~~~~~~--------------------~~~~~~  133 (360)
T 3e3p_A           81 IVQLQSYFYTLGERDRRDIYLNVVME-YVPD-TLHRCCRNYYR-----RQVAPP--------------------PILIKV  133 (360)
T ss_dssp             BCCEEEEEEEECSSCTTCEEEEEEEE-CCSC-BHHHHHHHHHT-----TTCCCC--------------------HHHHHH
T ss_pred             cccHHHhhhccccccccceeEEEEee-cccc-cHHHHHHHHhh-----cccCCC--------------------HHHHHH
Confidence            9999999974321  12335899999 9998 77766553110     011333                    356788


Q ss_pred             HHHHHHHHHHHHH--HCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchh
Q 005958          236 LMRDLLIGVNYLH--SHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAF  305 (667)
Q Consensus       236 i~~QIl~aL~yLH--s~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ks  305 (667)
                      ++.||+.||.|||  ++||+||||||+|||++..++.+||+|||++......        .+.|+|||++.+...++.++
T Consensus       134 ~~~qi~~al~~lH~~~~~ivH~Dlkp~NIll~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~  213 (360)
T 3e3p_A          134 FLFQLIRSIGCLHLPSVNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSEPNVAYICSRYYRAPELIFGNQHYTTAV  213 (360)
T ss_dssp             HHHHHHHHHHHHTSTTTCCBCSCCCGGGEEEETTTTEEEECCCTTCBCCCTTSCCCSTTSCGGGCCHHHHTTCSSCCTHH
T ss_pred             HHHHHHHHHHHHhCCCCCeecCcCCHHHEEEeCCCCcEEEeeCCCceecCCCCCcccccCCcceeCHHHHcCCCCCCcHH
Confidence            9999999999999  9999999999999999865789999999999866543        25699999877777799999


Q ss_pred             hHHHHHHHHHHHHhCCCCChhh---hhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCC-------cccccCCCHHHHH
Q 005958          306 DMRCVGFMMAKMVLRELMDPLI---FTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTG-------FQILDRNWGAGWN  375 (667)
Q Consensus       306 DIWSLGviLyemltG~~PF~~~---~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~s~e~~d  375 (667)
                      |||||||++|+|++|++||...   .....+....+.++......+..............       .......++++++
T Consensus       214 Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (360)
T 3e3p_A          214 DIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYD  293 (360)
T ss_dssp             HHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCcCCCChHHHHHHHHHHcCCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHH
Confidence            9999999999999999999732   22333333444444333222211000000000000       0112235789999


Q ss_pred             HHHHhhhcCcCCCCCHHHHHcCCCCCCCCCCC
Q 005958          376 LLSLLLATKPSKRISCLDALRHPFLCGPRWRV  407 (667)
Q Consensus       376 LI~~~L~~DP~kRpSa~elL~HPwf~~~~~~~  407 (667)
                      ||.+||++||++|||+.|+|+||||++...+.
T Consensus       294 li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~~  325 (360)
T 3e3p_A          294 LLSALLQYLPEERMKPYEALCHPYFDELHDPA  325 (360)
T ss_dssp             HHHHHTCSSGGGSCCHHHHTTSGGGGGGGCTT
T ss_pred             HHHHHhccCccccCCHHHHhcCccccccCCcc
Confidence            99999999999999999999999999876433

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=5.3e-43  Score=360.42  Aligned_cols=251  Identities=21%  Similarity=0.234  Sum_probs=204.0

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMY  154 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~  154 (667)
                      ...+..++|++.+.||+|+||    .||+|.+..     +++.||||++....     ..+.+.+|+.+++.++      
T Consensus         5 ~g~~~~~~y~i~~~lg~G~~g----~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~------   69 (276)
T 2h6d_A            5 DGRVKIGHYVLGDTLGVGTFG----KVKIGEHQL-----TGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFR------   69 (276)
T ss_dssp             --CCEETTEEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCC------
T ss_pred             cCcceeccEEEEeeecCCCCe----EEEEEEECC-----CCceEEEEEeccccccchhHHHHHHHHHHHHhcCC------
Confidence            345677999999999999999    999999987     79999999997532     2246789999999984      


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      ||||+++++++.     ..+..|+||| |+++++|.+++...+         .+++                    ..++
T Consensus        70 h~~i~~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~  114 (276)
T 2h6d_A           70 HPHIIKLYQVIS-----TPTDFFMVME-YVSGGELFDYICKHG---------RVEE--------------------MEAR  114 (276)
T ss_dssp             CTTBCCEEEEEE-----CSSEEEEEEE-CCCSCBHHHHHHHHC---------SCCH--------------------HHHH
T ss_pred             CCCEeEEEEEEe-----cCCeEEEEEe-ccCCCcHHHHHhccC---------CCCH--------------------HHHH
Confidence            999999999998     7789999999 999999999998754         4554                    4577


Q ss_pred             HHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhh
Q 005958          235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksD  306 (667)
                      .++.||+.||.|||++||+||||||+||+++. ++.+||+|||++......        .+.|+|||.+.+...++.++|
T Consensus       115 ~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~D  193 (276)
T 2h6d_A          115 RLFQQILSAVDYCHRHMVVHRDLKPENVLLDA-HMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVD  193 (276)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCCCCCGGGEEECT-TSCEEECCCCGGGCCCC-------------CCTGGGTTSCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCccCCCChhhEEECC-CCCEEEeecccccccCCCcceecccCCccccCHHHHcCCCCCCccch
Confidence            89999999999999999999999999999998 899999999999866543        367999997666555578999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          307 MRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       307 IWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      ||||||++|+|++|..||..            .......+.+.   ...       ......+++++.+||.+||+.||+
T Consensus       194 i~slG~~l~~l~~g~~p~~~------------~~~~~~~~~~~---~~~-------~~~~~~~~~~l~~li~~~l~~~p~  251 (276)
T 2h6d_A          194 IWSCGVILYALLCGTLPFDD------------EHVPTLFKKIR---GGV-------FYIPEYLNRSVATLLMHMLQVDPL  251 (276)
T ss_dssp             HHHHHHHHHHHHHSSCSSCC------------SSHHHHHHHHH---HCC-------CCCCTTSCHHHHHHHHHHTCSSGG
T ss_pred             HHHHHHHHHHHHhCCCCCCC------------CcHHHHHHHhh---cCc-------ccCchhcCHHHHHHHHHHccCChh
Confidence            99999999999999999852            12222222221   111       112345688999999999999999


Q ss_pred             CCCCHHHHHcCCCCCCC
Q 005958          387 KRISCLDALRHPFLCGP  403 (667)
Q Consensus       387 kRpSa~elL~HPwf~~~  403 (667)
                      +|||+.|+++||||++.
T Consensus       252 ~Rps~~~~l~h~~~~~~  268 (276)
T 2h6d_A          252 KRATIKDIREHEWFKQD  268 (276)
T ss_dssp             GSCCHHHHHHSHHHHTT
T ss_pred             hCCCHHHHHhChhhccC
Confidence            99999999999999764

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=1.9e-43  Score=386.52  Aligned_cols=261  Identities=18%  Similarity=0.221  Sum_probs=202.9

Q ss_pred             cccCCeEEE-eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           83 FNMGDFKIL-DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        83 ~~~~~y~i~-~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ...++|.+. +.||+|+||    +||+|.++.     +++.||||++...   ....+|++++.++.     .||||+++
T Consensus        58 ~~~~~y~~~~~~LG~G~~g----~V~~~~~~~-----~~~~vAiK~~~~~---~~~~~E~~~~~~~~-----~hp~iv~l  120 (400)
T 1nxk_A           58 AIIDDYKVTSQVLGLGING----KVLQIFNKR-----TQEKFALKMLQDC---PKARREVELHWRAS-----QCPHIVRI  120 (400)
T ss_dssp             CGGGTEEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEECS---HHHHHHHHHHHHHT-----TSTTBCCE
T ss_pred             cccccceeccceeeeccCe----EEEEEEECC-----CCCEEEEEEeCcc---hhHHHHHHHHHHhc-----CCCCcceE
Confidence            345789887 789999999    999999998     8999999999643   45678999987775     69999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.... .+.+.+||||| |+++|+|.+++.....       ..+++                    ..++.|+.||+
T Consensus       121 ~~~~~~~~-~~~~~~~lv~E-~~~gg~L~~~l~~~~~-------~~l~~--------------------~~~~~i~~qi~  171 (400)
T 1nxk_A          121 VDVYENLY-AGRKCLLIVME-CLDGGELFSRIQDRGD-------QAFTE--------------------REASEIMKSIG  171 (400)
T ss_dssp             EEEEEEEE-TTEEEEEEEEE-CCCSEEHHHHHHCC----------CCBH--------------------HHHHHHHHHHH
T ss_pred             eEEEeecc-cCCcEEEEEEE-eCCCCcHHHHHHHhCC-------CCCCH--------------------HHHHHHHHHHH
Confidence            99987321 13678999999 9999999999986431       13554                    45788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCC--CCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPV--DRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~--~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      .||.|||++||+||||||+|||++..  ++.+||+|||+++.....        .+.|+|||++ ....|+.++||||||
T Consensus       172 ~aL~~LH~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DiwslG  250 (400)
T 1nxk_A          172 EAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVL-GPEKYDKSCDMWSLG  250 (400)
T ss_dssp             HHHHHHHHTTEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC-----------CTTCCGGGS-CCCCSSSHHHHHHHH
T ss_pred             HHHHHHHHCCccccCcCcceEEEecCCCCccEEEEecccccccCCCCccccCCCCCCccCHhhc-CCCCCCCcccHHHHH
Confidence            99999999999999999999999863  578999999999865432        3779999954 556799999999999


Q ss_pred             HHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH
Q 005958          312 FMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC  391 (667)
Q Consensus       312 viLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa  391 (667)
                      |++|||++|++||.......       ... .....+.   .....   ...+.+..+++++++||.+||+.||++|||+
T Consensus       251 ~il~ell~g~~pf~~~~~~~-------~~~-~~~~~i~---~~~~~---~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~  316 (400)
T 1nxk_A          251 VIMYILLCGYPPFYSNHGLA-------ISP-GMKTRIR---MGQYE---FPNPEWSEVSEEVKMLIRNLLKTEPTQRMTI  316 (400)
T ss_dssp             HHHHHHHHSSCSCCCCTTCS-------SCC-SHHHHHH---HTCCC---CCTTTTTTSCHHHHHHHHTTSCSSGGGSCCH
T ss_pred             HHHHHHHhCCCCCCCCcccc-------ccH-HHHHHHH---cCccc---CCCcccccCCHHHHHHHHHHCCCChhHCcCH
Confidence            99999999999996321100       000 1111111   11111   0112345688999999999999999999999


Q ss_pred             HHHHcCCCCCCCC
Q 005958          392 LDALRHPFLCGPR  404 (667)
Q Consensus       392 ~elL~HPwf~~~~  404 (667)
                      .|+|+||||.+..
T Consensus       317 ~eil~hp~~~~~~  329 (400)
T 1nxk_A          317 TEFMNHPWIMQST  329 (400)
T ss_dssp             HHHHHSHHHHTTT
T ss_pred             HHHhcCccccCCC
Confidence            9999999998654

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=4e-43  Score=373.40  Aligned_cols=282  Identities=20%  Similarity=0.237  Sum_probs=208.1

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-------hHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-------AQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-------~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      .++|++.+.||+|+||    +||+|.+..     +++.||+|++....       ..+.+.+|+.+++.++      |||
T Consensus        25 ~~~y~~~~~lG~G~~g----~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~------hpn   89 (345)
T 3hko_A           25 QKKYHLKGAIGQGSYG----VVRVAIENQ-----TRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLH------HPN   89 (345)
T ss_dssp             HHHEEEEEEEEECSSC----EEEEEEETT-----TCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCC------CTT
T ss_pred             hhheeecceeeecCCe----EEEEEEECC-----CCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCC------CCC
Confidence            4789999999999999    999999987     89999999997532       2356789999999995      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcc----ccc--cc--CCC---HHHHhhcCCCCCCCCCc
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPT----LEA--TL--ALD---EESVRKVGDDSIGGPAA  226 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~----l~~--~~--~l~---E~~a~~~~~~~~~~~~~  226 (667)
                      |+++++++.     +.+..++||| |+++|+|.+++........    ...  ..  ...   +................
T Consensus        90 iv~~~~~~~-----~~~~~~lv~e-~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (345)
T 3hko_A           90 IARLYEVYE-----DEQYICLVME-LCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDF  163 (345)
T ss_dssp             BCCEEEEEE-----CSSEEEEEEE-CCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCH
T ss_pred             cceeehhhc-----cCCeEEEEEe-CCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            999999998     7889999999 9999999999863210000    000  00  000   00000000000000112


Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCC--eEEEeeecccccccC-------------CCCCCCC
Q 005958          227 SRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDR--HIKVGILGNAADFYE-------------DGPNNSS  291 (667)
Q Consensus       227 ~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~--~vKL~DFGlA~~~~~-------------~~~~Y~A  291 (667)
                      .++...++.++.||+.||+|||++||+||||||+|||++. ++  .+||+|||++..+..             +.+.|+|
T Consensus       164 ~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIll~~-~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~a  242 (345)
T 3hko_A          164 VQREKLISNIMRQIFSALHYLHNQGICHRDIKPENFLFST-NKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVA  242 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESC-SSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHCCccccCCChhhEEEec-CCCceEEEeeccccccccccCccccccccccCCCccccC
Confidence            3345778899999999999999999999999999999986 44  899999999975432             2367999


Q ss_pred             cccccC-CCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCC
Q 005958          292 PDSNMD-RRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNW  370 (667)
Q Consensus       292 PE~l~~-~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s  370 (667)
                      ||++.+ ...|+.++|||||||++|||++|++||.+.            .....   ..........   ...+....++
T Consensus       243 PE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~------------~~~~~---~~~~~~~~~~---~~~~~~~~~~  304 (345)
T 3hko_A          243 PEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPGV------------NDADT---ISQVLNKKLC---FENPNYNVLS  304 (345)
T ss_dssp             HHHHTCSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCS------------SHHHH---HHHHHHCCCC---TTSGGGGGSC
T ss_pred             chhhccCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCC------------ChHHH---HHHHHhcccc---cCCcccccCC
Confidence            997654 367899999999999999999999999522            22111   1122222111   1122334578


Q ss_pred             HHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCCCC
Q 005958          371 GAGWNLLSLLLATKPSKRISCLDALRHPFLCGPRWR  406 (667)
Q Consensus       371 ~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~~~  406 (667)
                      +++++||.+||+.||++|||+.|+|+||||++..+.
T Consensus       305 ~~~~~li~~~l~~~p~~Rps~~~~l~hp~~~~~~~~  340 (345)
T 3hko_A          305 PLARDLLSNLLNRNVDERFDAMRALQHPWISQFSDK  340 (345)
T ss_dssp             HHHHHHHHHHSCSCTTTSCCHHHHHHSHHHHTTSSC
T ss_pred             HHHHHHHHHHcCCChhHCCCHHHHhcChhhccChHh
Confidence            999999999999999999999999999999987754

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=1.4e-43  Score=368.95  Aligned_cols=267  Identities=18%  Similarity=0.229  Sum_probs=188.2

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      ...+..++|++.+.||+|+||    .||+|.+..     +++.||||++....   ..+.+.+|+.+++.+      .||
T Consensus         9 p~~i~~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l------~h~   73 (303)
T 2vwi_A            9 PWSINRDDYELQEVIGSGATA----VVQAAYCAP-----KKEKVAIKRINLEKCQTSMDELLKEIQAMSQC------HHP   73 (303)
T ss_dssp             ----CCCCCEEEEECC---CC----CEEEEEC---------CEEEEECCC----------------CCCCC------CCT
T ss_pred             ccccchhhhhhhheeccccce----EEEEEEECC-----CCcEEEEEEEEhhhcchhHHHHHHHHHHHhhc------CCC
Confidence            345667899999999999999    999999887     78999999987532   234567888888877      599


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++.     ..+..++||| |+++|+|.+++........ .....++                    ...++.+
T Consensus        74 ~i~~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~~~~~-~~~~~~~--------------------~~~~~~i  126 (303)
T 2vwi_A           74 NIVSYYTSFV-----VKDELWLVMK-LLSGGSVLDIIKHIVAKGE-HKSGVLD--------------------ESTIATI  126 (303)
T ss_dssp             TBCCEEEEEE-----SSSCEEEEEE-CCTTCBHHHHHHHHHHTTT-TTTCSSC--------------------HHHHHHH
T ss_pred             CEeeEEEEEe-----ecCCcEEEeh-hccCCchHHHHHHHhhccc-cccCCCC--------------------HHHHHHH
Confidence            9999999998     7788999999 9999999999975210000 0001233                    4568889


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC--------------CCCCCCCcccccCCCCCC
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE--------------DGPNNSSPDSNMDRRQMM  302 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~--------------~~~~Y~APE~l~~~~~ys  302 (667)
                      +.||+.||.|||++||+||||||+||+++. ++.+||+|||++.....              +.+.|+|||++.+...++
T Consensus       127 ~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  205 (303)
T 2vwi_A          127 LREVLEGLEYLHKNGQIHRDVKAGNILLGE-DGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYD  205 (303)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCCSGGGEEECT-TCCEEECCCHHHHHCC---------------CCCTTCCHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhCCCCCCCCChhhEEEcC-CCCEEEEeccchheeccCCCccchhhhcccCCCccccCHHHhccccCCC
Confidence            999999999999999999999999999998 89999999999875432              236799999766556689


Q ss_pred             chhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCC---CCCCCcccccCCCHHHHHHHHH
Q 005958          303 IAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSS---SGNTGFQILDRNWGAGWNLLSL  379 (667)
Q Consensus       303 ~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~s~e~~dLI~~  379 (667)
                      .++|||||||++|+|++|+.||....            .......   ......+   ...........+++++++||.+
T Consensus       206 ~~~Di~slG~il~~l~~g~~pf~~~~------------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  270 (303)
T 2vwi_A          206 FKADIWSFGITAIELATGAAPYHKYP------------PMKVLML---TLQNDPPSLETGVQDKEMLKKYGKSFRKMISL  270 (303)
T ss_dssp             THHHHHHHHHHHHHHHHSSCTTTTSC------------GGGHHHH---HHTSSCCCTTC-----CCCCCCCHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHhCCCCCccCc------------hhhHHHH---HhccCCCccccccccchhhhhhhHHHHHHHHH
Confidence            99999999999999999999996321            1111111   1111111   1111123445678999999999


Q ss_pred             hhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          380 LLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       380 ~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      ||+.||++|||+.|+++||||+...
T Consensus       271 ~l~~dp~~Rps~~~ll~h~~~~~~~  295 (303)
T 2vwi_A          271 CLQKDPEKRPTAAELLRHKFFQKAK  295 (303)
T ss_dssp             HCCSSGGGSCCHHHHHTSTTC----
T ss_pred             HccCChhhCcCHHHHhhChhhhcCC
Confidence            9999999999999999999998865

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=3.9e-43  Score=372.53  Aligned_cols=260  Identities=17%  Similarity=0.135  Sum_probs=208.2

Q ss_pred             cccCCeEEE-eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           83 FNMGDFKIL-DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        83 ~~~~~y~i~-~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      ...++|.+. +.||+|+||    .||+|++..     +++.||+|++...    .....+.+|+.+++.+.     .|||
T Consensus        25 ~~~~~y~~~~~~lG~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~-----~~~~   90 (327)
T 3lm5_A           25 NFNNFYILTSKELGRGKFA----VVRQCISKS-----TGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAK-----SCPR   90 (327)
T ss_dssp             HHHHHEEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEESEETTEECHHHHHHHHHHHHHTT-----TCTT
T ss_pred             hhhhEEeeccceeCCCCCe----EEEEEEECC-----CCCEEEEEEEehhhcchHHHHHHHHHHHHHHhcc-----CCCC
Confidence            334678887 899999999    999999998     7999999999752    22456789999999997     6899


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     ..+.+++||| |+.+|+|.+++....       ...+++                    ..++.++
T Consensus        91 iv~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~~-------~~~~~~--------------------~~~~~i~  137 (327)
T 3lm5_A           91 VINLHEVYE-----NTSEIILILE-YAAGGEIFSLCLPEL-------AEMVSE--------------------NDVIRLI  137 (327)
T ss_dssp             BCCEEEEEE-----CSSEEEEEEE-CCTTEEGGGGGSSCC--------CCCCH--------------------HHHHHHH
T ss_pred             EEEEEEEEE-----eCCeEEEEEE-ecCCCcHHHHHHHhc-------ccCCCH--------------------HHHHHHH
Confidence            999999998     7889999999 999999999885431       013444                    4578899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcC--CCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhH
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISP--VDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~--~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDI  307 (667)
                      .||+.||.|||++||+||||||+|||++.  .++.+||+|||++......        .+.|+|||++ ....++.++||
T Consensus       138 ~ql~~~L~~LH~~givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~Di  216 (327)
T 3lm5_A          138 KQILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACELREIMGTPEYLAPEIL-NYDPITTATDM  216 (327)
T ss_dssp             HHHHHHHHHHHHTTEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC---------CCCGGGCCHHHH-TTCCCCTHHHH
T ss_pred             HHHHHHHHHHHHCCeecCcCChHHEEEecCCCCCcEEEeeCccccccCCccccccccCCcCccCCeee-cCCCCCchhhH
Confidence            99999999999999999999999999986  2578999999999865432        3689999955 45568999999


Q ss_pred             HHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          308 RCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       308 WSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      |||||++|+|++|++||..            .........+......      ........+++++++||.+||+.||++
T Consensus       217 wslG~il~~ll~g~~pf~~------------~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~li~~~L~~dP~~  278 (327)
T 3lm5_A          217 WNIGIIAYMLLTHTSPFVG------------EDNQETYLNISQVNVD------YSEETFSSVSQLATDFIQSLLVKNPEK  278 (327)
T ss_dssp             HHHHHHHHHHHHSSCSSCC------------SSHHHHHHHHHHTCCC------CCTTTTTTSCHHHHHHHHHHSCSSGGG
T ss_pred             HHHHHHHHHHHhCCCCCCC------------CCchHHHHHHHhcccc------cCchhhcccCHHHHHHHHHHcCCChhh
Confidence            9999999999999999852            2222222222111111      112234567899999999999999999


Q ss_pred             CCCHHHHHcCCCCCCCCCCCC
Q 005958          388 RISCLDALRHPFLCGPRWRVD  408 (667)
Q Consensus       388 RpSa~elL~HPwf~~~~~~~~  408 (667)
                      |||++|+|+||||++..|...
T Consensus       279 Rpt~~~ll~h~~~~~~~~~~~  299 (327)
T 3lm5_A          279 RPTAEICLSHSWLQQWDFENL  299 (327)
T ss_dssp             SCCHHHHTTCGGGCCCCTTCC
T ss_pred             CcCHHHHhCCHhhcccccccc
Confidence            999999999999999887544

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=3.3e-43  Score=362.50  Aligned_cols=248  Identities=21%  Similarity=0.184  Sum_probs=203.1

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      .++|++.+.||+|+||    .||+|.+..     ++..||+|++...  ...+.+.+|++++++++      ||||++++
T Consensus         8 ~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~------h~~i~~~~   72 (277)
T 3f3z_A            8 NQYYTLENTIGRGSWG----EVKIAVQKG-----TRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLD------HPNIIRLY   72 (277)
T ss_dssp             HHHEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCC------CTTBCCEE
T ss_pred             hhhEEeeeEEeecCCE----EEEEEEeCC-----CCcEEEEEeehhhccchHHHHHHHHHHHHhCC------CCCEeeEE
Confidence            3679999999999999    999999998     7899999999763  23466789999999994      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     +.+..++||| |+++++|.+++...+         .+++                    ..++.++.||+.
T Consensus        73 ~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~~---------~~~~--------------------~~~~~i~~~i~~  117 (277)
T 3f3z_A           73 ETFE-----DNTDIYLVME-LCTGGELFERVVHKR---------VFRE--------------------SDAARIMKDVLS  117 (277)
T ss_dssp             EEEE-----CSSEEEEEEE-CCCSCBHHHHHHHHC---------SCCH--------------------HHHHHHHHHHHH
T ss_pred             EEEe-----cCCeEEEEEe-ccCCCcHHHHHHHcC---------CCCH--------------------HHHHHHHHHHHH
Confidence            9999     7889999999 999999999998754         4554                    457889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEE---cCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHI---SPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl---~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      ||.|||++||+||||||+|||+   +. ++.+||+|||++......        .+.|+|||++.+  .++.++||||||
T Consensus       118 ~l~~lH~~~i~H~dlkp~Nil~~~~~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~--~~~~~~Di~slG  194 (277)
T 3f3z_A          118 AVAYCHKLNVAHRDLKPENFLFLTDSP-DSPLKLIDFGLAARFKPGKMMRTKVGTPYYVSPQVLEG--LYGPECDEWSAG  194 (277)
T ss_dssp             HHHHHHHTTEECCCCSGGGEEESSSST-TCCEEECCCTTCEECCTTSCBCCCCSCTTTCCHHHHTT--CBCTTHHHHHHH
T ss_pred             HHHHHHHCCccCCCCCHHHEEEecCCC-CCcEEEEecccceeccCccchhccCCCCCccChHHhcc--cCCchhhehhHH
Confidence            9999999999999999999999   55 789999999999765432        368999996543  389999999999


Q ss_pred             HHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH
Q 005958          312 FMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC  391 (667)
Q Consensus       312 viLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa  391 (667)
                      |++|+|++|++||..            .........+   ......   ........+++++.+||.+||+.||++|||+
T Consensus       195 ~~l~~l~~g~~p~~~------------~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~  256 (277)
T 3f3z_A          195 VMMYVLLCGYPPFSA------------PTDSEVMLKI---REGTFT---FPEKDWLNVSPQAESLIRRLLTKSPKQRITS  256 (277)
T ss_dssp             HHHHHHHHSSCSSCC------------SSHHHHHHHH---HHCCCC---CCHHHHTTSCHHHHHHHHHHTCSSTTTSCCH
T ss_pred             HHHHHHHHCCCCCCC------------CCHHHHHHHH---HhCCCC---CCchhhhcCCHHHHHHHHHHccCChhhCcCH
Confidence            999999999999852            1222222211   111111   0111223678899999999999999999999


Q ss_pred             HHHHcCCCCCCC
Q 005958          392 LDALRHPFLCGP  403 (667)
Q Consensus       392 ~elL~HPwf~~~  403 (667)
                      .|+|+||||++.
T Consensus       257 ~~~l~h~~~~~~  268 (277)
T 3f3z_A          257 LQALEHEWFEKQ  268 (277)
T ss_dssp             HHHTTSHHHHHH
T ss_pred             HHHhcCHHHhcc
Confidence            999999999764

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=8.3e-43  Score=365.08  Aligned_cols=250  Identities=19%  Similarity=0.227  Sum_probs=204.6

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      .++|++.+.||+|+||    .||+|++..     +++.||+|++....  ..+.+.+|+.++++++      ||||++++
T Consensus         8 ~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~~~   72 (304)
T 2jam_A            8 RKTFIFMEVLGSGAFS----EVFLVKQRL-----TGKLFALKCIKKSPAFRDSSLENEIAVLKKIK------HENIVTLE   72 (304)
T ss_dssp             HHHEEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEEECC------HHHHHHHHHHHCC------CTTBCCEE
T ss_pred             hccceeeeeccCCCCc----eEEEEEECC-----CCCEEEEEEEecccccchHHHHHHHHHHHhCC------CCCeeehh
Confidence            4689999999999999    999999987     79999999997632  3345789999999994      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     +.+.+|+||| |+++|+|.+++...+         .+++                    ..++.++.||+.
T Consensus        73 ~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~~~~~qi~~  117 (304)
T 2jam_A           73 DIYE-----STTHYYLVMQ-LVSGGELFDRILERG---------VYTE--------------------KDASLVIQQVLS  117 (304)
T ss_dssp             EEEE-----CSSEEEEEEC-CCCSCBHHHHHHHHS---------CCCH--------------------HHHHHHHHHHHH
T ss_pred             hhcc-----cCCEEEEEEE-cCCCccHHHHHHHcC---------CCCH--------------------HHHHHHHHHHHH
Confidence            9998     7889999999 999999999998654         4554                    457789999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEE---cCCCCeEEEeeecccccccC-------CCCCCCCcccccCCCCCCchhhHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHI---SPVDRHIKVGILGNAADFYE-------DGPNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl---~~~~~~vKL~DFGlA~~~~~-------~~~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      ||.|||++||+||||||+||++   +. ++.+||+|||++.....       +.+.|+|||++ ....++.++|||||||
T Consensus       118 ~l~~lH~~~i~H~dikp~NIl~~~~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~  195 (304)
T 2jam_A          118 AVKYLHENGIVHRDLKPENLLYLTPEE-NSKIMITDFGLSKMEQNGIMSTACGTPGYVAPEVL-AQKPYSKAVDCWSIGV  195 (304)
T ss_dssp             HHHHHHHTTCCCCSCCGGGCEESSSST-TCCEEBCSCSTTCCCCCBTTHHHHSCCCBCCTTTB-SSCSCCHHHHHHHHHH
T ss_pred             HHHHHHHCCccccCCCHHHEEEecCCC-CCCEEEccCCcceecCCCccccccCCCCccChHHh-ccCCCCchhhHHHHHH
Confidence            9999999999999999999999   44 78999999999976544       24789999955 4556899999999999


Q ss_pred             HHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHH
Q 005958          313 MMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCL  392 (667)
Q Consensus       313 iLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~  392 (667)
                      ++|+|++|.+||..            .....+.+.+..   ....   ...+....+++++.+||.+||+.||++|||++
T Consensus       196 il~~l~~g~~pf~~------------~~~~~~~~~i~~---~~~~---~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~  257 (304)
T 2jam_A          196 ITYILLCGYPPFYE------------ETESKLFEKIKE---GYYE---FESPFWDDISESAKDFICHLLEKDPNERYTCE  257 (304)
T ss_dssp             HHHHHHHSSCTTTT------------SCHHHHHHHHHH---CCCC---CCTTTTTTSCHHHHHHHHHHHCSSTTTSCCHH
T ss_pred             HHHHHHHCCCCCCC------------CCHHHHHHHHHc---CCCC---CCccccccCCHHHHHHHHHHcCCChhHCcCHH
Confidence            99999999999852            222222222221   1111   01123456789999999999999999999999


Q ss_pred             HHHcCCCCCCCC
Q 005958          393 DALRHPFLCGPR  404 (667)
Q Consensus       393 elL~HPwf~~~~  404 (667)
                      |+|+||||++..
T Consensus       258 ~~l~h~~~~~~~  269 (304)
T 2jam_A          258 KALSHPWIDGNT  269 (304)
T ss_dssp             HHHTSHHHHSSC
T ss_pred             HHhcCccccCCC
Confidence            999999998754

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=6.5e-43  Score=370.37  Aligned_cols=246  Identities=17%  Similarity=0.228  Sum_probs=202.4

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--hHHHHHHHHHHHHHHhhccCCCCCcceEEEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGY  164 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~  164 (667)
                      .|+..+.||+|+||    .||+|++..     +|+.||||++....  ..+.+.+|+.+++.++      ||||++++++
T Consensus        46 ~~~~~~~lg~G~~g----~V~~a~~~~-----~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~------h~niv~~~~~  110 (321)
T 2c30_A           46 LLDSYVKIGEGSTG----IVCLAREKH-----SGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQ------HFNVVEMYKS  110 (321)
T ss_dssp             HEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEETTTCCSHHHHHHHHHHHTTCC------CTTBCCEEEE
T ss_pred             hhhccEEeccCCCe----EEEEEEECC-----CCcEEEEEEEeccchhHHHHHHHHHHHHHhCC------CCCcceEEEE
Confidence            48888999999999    999999987     79999999997532  3456789999999994      9999999999


Q ss_pred             EEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHH
Q 005958          165 VSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGV  244 (667)
Q Consensus       165 ~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL  244 (667)
                      +.     ..+..++||| |+++|+|.+++...          .+++                    ..++.++.||+.||
T Consensus       111 ~~-----~~~~~~lv~e-~~~~~~L~~~l~~~----------~l~~--------------------~~~~~i~~qi~~~L  154 (321)
T 2c30_A          111 YL-----VGEELWVLME-FLQGGALTDIVSQV----------RLNE--------------------EQIATVCEAVLQAL  154 (321)
T ss_dssp             EE-----ETTEEEEEEC-CCCSCBHHHHHTTC----------CCCH--------------------HHHHHHHHHHHHHH
T ss_pred             EE-----ECCEEEEEEe-cCCCCCHHHHHHhc----------CCCH--------------------HHHHHHHHHHHHHH
Confidence            98     6788999999 99999999998753          3554                    45788999999999


Q ss_pred             HHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHHHH
Q 005958          245 NYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMA  315 (667)
Q Consensus       245 ~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGviLy  315 (667)
                      .|||++||+||||||+|||++. ++.+||+|||++......         .+.|+|||++ ....++.++|||||||++|
T Consensus       155 ~~LH~~~ivH~Dlkp~NIll~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~slG~il~  232 (321)
T 2c30_A          155 AYLHAQGVIHRDIKSDSILLTL-DGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVI-SRSLYATEVDIWSLGIMVI  232 (321)
T ss_dssp             HHHHHTTEECCCCSGGGEEECT-TCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHH-TTCCBCTHHHHHHHHHHHH
T ss_pred             HHHHHCCeecCCCCHHHEEECC-CCcEEEeeeeeeeecccCccccccccCCccccCHhhh-cCCCCCchhhHHHHHHHHH
Confidence            9999999999999999999998 899999999998765432         2679999955 4556899999999999999


Q ss_pred             HHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHH
Q 005958          316 KMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDAL  395 (667)
Q Consensus       316 emltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL  395 (667)
                      ||++|++||..            .........+   .....+    .......+++++++||.+||+.||++|||+.|+|
T Consensus       233 el~~g~~pf~~------------~~~~~~~~~~---~~~~~~----~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell  293 (321)
T 2c30_A          233 EMVDGEPPYFS------------DSPVQAMKRL---RDSPPP----KLKNSHKVSPVLRDFLERMLVRDPQERATAQELL  293 (321)
T ss_dssp             HHHHSSCTTTT------------SCHHHHHHHH---HHSSCC----CCTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHH
T ss_pred             HHHhCCCCCCC------------CCHHHHHHHH---hcCCCC----CcCccccCCHHHHHHHHHHccCChhhCcCHHHHh
Confidence            99999999852            2222222222   111111    1223345788999999999999999999999999


Q ss_pred             cCCCCCCCC
Q 005958          396 RHPFLCGPR  404 (667)
Q Consensus       396 ~HPwf~~~~  404 (667)
                      +||||....
T Consensus       294 ~hp~~~~~~  302 (321)
T 2c30_A          294 DHPFLLQTG  302 (321)
T ss_dssp             TSGGGGGCC
T ss_pred             cChhhccCC
Confidence            999998754

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=2e-43  Score=394.79  Aligned_cols=253  Identities=17%  Similarity=0.190  Sum_probs=209.2

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-----hhHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-----QAQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-----~~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      ...++|++.+.||+|+||    .||+|++..     +++.||||++...     ...+.+.+|+.+++++      +|||
T Consensus        23 ~~~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l------~hpn   87 (484)
T 3nyv_A           23 IFSDRYKGQRVLGKGSFG----EVILCKDKI-----TGQECAVKVISKRQVKQKTDKESLLREVQLLKQL------DHPN   87 (484)
T ss_dssp             CHHHHEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTC------CCTT
T ss_pred             cccCceEEeeEEecCCCE----EEEEEEECC-----CCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhC------CCCC
Confidence            344789999999999999    999999998     8999999998642     2346678999999999      4999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     +.+.+|+||| |+.+|+|.+++...+         .+++                    ..++.++
T Consensus        88 iv~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~~---------~~~~--------------------~~~~~i~  132 (484)
T 3nyv_A           88 IMKLYEFFE-----DKGYFYLVGE-VYTGGELFDEIISRK---------RFSE--------------------VDAARII  132 (484)
T ss_dssp             BCCEEEEEE-----CSSEEEEEEC-CCCSCBHHHHHHTCS---------CCBH--------------------HHHHHHH
T ss_pred             CCcEEEEEE-----eCCEEEEEEe-cCCCCCHHHHHHhcC---------CCCH--------------------HHHHHHH
Confidence            999999999     7889999999 999999999998754         4554                    4577899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcC--CCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhH
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISP--VDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~--~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDI  307 (667)
                      .||+.||.|||++||+||||||+|||++.  .++.+||+|||+|..+...        .+.|+|||++.+  .|+.++||
T Consensus       133 ~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~Di  210 (484)
T 3nyv_A          133 RQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHG--TYDEKCDV  210 (484)
T ss_dssp             HHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCCCCSHHHHTTGGGTCCHHHHHT--CCCTHHHH
T ss_pred             HHHHHHHHHHHHCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcccccccccCCCCccccCceeecC--CCCCccee
Confidence            99999999999999999999999999952  2689999999999876543        378999996644  59999999


Q ss_pred             HHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          308 RCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       308 WSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      |||||++|+|++|.+||.            +.........+   ......   ...+.+..+++++++||.+||++||++
T Consensus       211 wslG~il~~ll~g~~pf~------------~~~~~~~~~~i---~~~~~~---~~~~~~~~~s~~~~~li~~~L~~dp~~  272 (484)
T 3nyv_A          211 WSTGVILYILLSGCPPFN------------GANEYDILKKV---EKGKYT---FELPQWKKVSESAKDLIRKMLTYVPSM  272 (484)
T ss_dssp             HHHHHHHHHHHHSSCSSC------------CSSHHHHHHHH---HHCCCC---CCSGGGGGSCHHHHHHHHHHTCSSGGG
T ss_pred             HHHHHHHHHHHHCCCCCC------------CCCHHHHHHHH---HcCCCC---CCCcccccCCHHHHHHHHHHCCCChhH
Confidence            999999999999999995            22332222222   222111   123445678999999999999999999


Q ss_pred             CCCHHHHHcCCCCCCCCC
Q 005958          388 RISCLDALRHPFLCGPRW  405 (667)
Q Consensus       388 RpSa~elL~HPwf~~~~~  405 (667)
                      |||+.|+|+||||+...+
T Consensus       273 R~s~~e~l~h~~~~~~~~  290 (484)
T 3nyv_A          273 RISARDALDHEWIQTYTK  290 (484)
T ss_dssp             SCCHHHHHTSHHHHHHTC
T ss_pred             CcCHHHHhhChhhccccc
Confidence            999999999999987543

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=5.7e-43  Score=366.70  Aligned_cols=277  Identities=22%  Similarity=0.311  Sum_probs=202.8

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      .++|++.+.||+|+||    .||+|.+..     +++.||||++...  ...+.+.+|++++++++      ||||++++
T Consensus        10 ~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~------h~~iv~~~   74 (320)
T 2i6l_A           10 GSRYMDLKPLGCGGNG----LVFSAVDND-----CDKRVAIKKIVLTDPQSVKHALREIKIIRRLD------HDNIVKVF   74 (320)
T ss_dssp             TTTEEEEEECC---------CEEEEEETT-----TTEEEEEEEEECCSHHHHHHHHHHHHHHHTCC------CTTBCCEE
T ss_pred             CCceeEEEEeccCCCe----EEEEEEECC-----CCeEEEEEEEecCChHHHHHHHHHHHHHHhcC------CCCeeEEE
Confidence            4789999999999999    999999997     7999999998753  23456789999999994      99999999


Q ss_pred             EEEEecc---------cCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHH
Q 005958          163 GYVSSHT---------TSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLI  233 (667)
Q Consensus       163 ~~~~~~~---------~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i  233 (667)
                      +++....         .......|+||| |+++ +|.+++...          .+++                    ..+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e-~~~~-~L~~~~~~~----------~~~~--------------------~~~  122 (320)
T 2i6l_A           75 EILGPSGSQLTDDVGSLTELNSVYIVQE-YMET-DLANVLEQG----------PLLE--------------------EHA  122 (320)
T ss_dssp             EEECTTSCBCCC----CCSCSEEEEEEE-CCSE-EHHHHHTTC----------CCCH--------------------HHH
T ss_pred             EeccccccccccccccccccCceeEEee-ccCC-CHHHHhhcC----------CccH--------------------HHH
Confidence            9985321         124578999999 9985 999998653          3454                    456


Q ss_pred             HHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC------------CCCCCCcccccCCCCC
Q 005958          234 RLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED------------GPNNSSPDSNMDRRQM  301 (667)
Q Consensus       234 ~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------------~~~Y~APE~l~~~~~y  301 (667)
                      +.++.||+.||+|||++||+||||||+|||++..++.+||+|||++......            .+.|+|||.+.....+
T Consensus       123 ~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  202 (320)
T 2i6l_A          123 RLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNY  202 (320)
T ss_dssp             HHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTTEEEECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCC
T ss_pred             HHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCeEEEccCccccccCCCcccccccccccccccccCcHHhcCcccC
Confidence            7899999999999999999999999999999864789999999999865321            3669999987776789


Q ss_pred             CchhhHHHHHHHHHHHHhCCCCChhhhh---hhhhhhccCCChhHHHHHHHHHh----c-cCCCCCCCCcccccCCCHHH
Q 005958          302 MIAFDMRCVGFMMAKMVLRELMDPLIFT---KFKSFLTKGIDPSCLREFLLQVL----N-RNSSSGNTGFQILDRNWGAG  373 (667)
Q Consensus       302 s~ksDIWSLGviLyemltG~~PF~~~~~---~~~~~~~~g~~~~~l~~~~~~~~----~-~~~~~~~~~~~~~~~~s~e~  373 (667)
                      +.++|||||||++|||++|++||.....   ...+..............+....    . .............+.+++++
T Consensus       203 ~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (320)
T 2i6l_A          203 TKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREA  282 (320)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHH
T ss_pred             CchhhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHH
Confidence            9999999999999999999999973221   11111111111111111100000    0 00000001112345688999


Q ss_pred             HHHHHHhhhcCcCCCCCHHHHHcCCCCCCCCCCCC
Q 005958          374 WNLLSLLLATKPSKRISCLDALRHPFLCGPRWRVD  408 (667)
Q Consensus       374 ~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~~~~~  408 (667)
                      ++||.+||+.||++|||++|+|+||||+...++..
T Consensus       283 ~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~~p~~  317 (320)
T 2i6l_A          283 VDFLEQILTFSPMDRLTAEEALSHPYMSIYSFPMD  317 (320)
T ss_dssp             HHHHHTTSCSSGGGSCCHHHHHTSHHHHTTCC---
T ss_pred             HHHHHHHcCCCccccCCHHHHhCCcccccccCccC
Confidence            99999999999999999999999999998876543

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=9.3e-43  Score=372.06  Aligned_cols=253  Identities=20%  Similarity=0.271  Sum_probs=200.2

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCC
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      ..+..++|++++.||+|+||    .||+|.+.      +++.||||++...    ...+.+.+|+.+|+++++    .||
T Consensus         4 i~~~~~~y~i~~~lG~G~~g----~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~----~~~   69 (343)
T 3dbq_A            4 ISVKGRIYSILKQIGSGGSS----KVFQVLNE------KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQ----HSD   69 (343)
T ss_dssp             EESSSCEEEEEEEESCCSSE----EEEEEECT------TSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTT----TCT
T ss_pred             eeeecCEEEEEEEEecCCCe----EEEEEEeC------CCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhh----cCC
Confidence            34556789999999999999    99999885      5889999999753    223567899999999962    139


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++.     ..+.+||||| +.++ +|.+++...+         .+++                    ..++.+
T Consensus        70 ~iv~~~~~~~-----~~~~~~lv~e-~~~~-~L~~~l~~~~---------~~~~--------------------~~~~~i  113 (343)
T 3dbq_A           70 KIIRLYDYEI-----TDQYIYMVME-CGNI-DLNSWLKKKK---------SIDP--------------------WERKSY  113 (343)
T ss_dssp             TBCCEEEEEE-----CSSEEEEEEC-CCSE-EHHHHHHHSC---------CCCH--------------------HHHHHH
T ss_pred             ceEEEeeeEe-----eCCEEEEEEe-CCCC-CHHHHHHhcC---------CCCH--------------------HHHHHH
Confidence            9999999999     7889999999 7665 9999998764         4554                    456789


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-----------CCCCCCCcccccC--------
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-----------DGPNNSSPDSNMD--------  297 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-----------~~~~Y~APE~l~~--------  297 (667)
                      +.||+.||.|||++||+||||||+|||++  ++.+||+|||+|+....           +.+.|+|||++.+        
T Consensus       114 ~~qi~~al~~lH~~~iiHrDikp~NIll~--~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~  191 (343)
T 3dbq_A          114 WKNMLEAVHTIHQHGIVHSDLKPANFLIV--DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENG  191 (343)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCCCGGGEEEE--TTEEEECCCSSSCCC------------CCCCSSCCHHHHHHCC------
T ss_pred             HHHHHHHHHHHHhCCeecCCCCcceEEEE--CCcEEEeecccccccCcccccccCCCCcCCcCcCCHHHHhhcccccccc
Confidence            99999999999999999999999999997  58899999999976532           3478999997643        


Q ss_pred             --CCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHH
Q 005958          298 --RRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWN  375 (667)
Q Consensus       298 --~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~d  375 (667)
                        ...|+.++|||||||++|||++|++||.....             .. ..+.......     .........++++.+
T Consensus       192 ~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-------------~~-~~~~~~~~~~-----~~~~~~~~~~~~l~~  252 (343)
T 3dbq_A          192 KSKSKISPKSDVWSLGCILYYMTYGKTPFQQIIN-------------QI-SKLHAIIDPN-----HEIEFPDIPEKDLQD  252 (343)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHSSCTTTTCCS-------------HH-HHHHHHHCTT-----SCCCCCCCSCHHHHH
T ss_pred             ccccCCCchhhHHHHHHHHHHHHhCCCcchhhhh-------------HH-HHHHHHhcCC-----cccCCcccCCHHHHH
Confidence              36689999999999999999999999963211             01 1111111111     112233456789999


Q ss_pred             HHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          376 LLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       376 LI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      ||.+||+.||++|||+.|+|+||||+...
T Consensus       253 li~~~L~~dp~~Rpt~~e~l~hp~~~~~~  281 (343)
T 3dbq_A          253 VLKCCLKRDPKQRISIPELLAHPYVQIQT  281 (343)
T ss_dssp             HHHHHTCSSTTTSCCHHHHHTSHHHHSCC
T ss_pred             HHHHHcCCChhHCCCHHHHHhCccccccC
Confidence            99999999999999999999999998644

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=7.9e-43  Score=359.88  Aligned_cols=248  Identities=21%  Similarity=0.301  Sum_probs=189.0

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-----HHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-----QRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-----~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      .+++|++.+.||+|+||    .||+|++..     +++.||||++.....     .+.+.+|+.+++.++      ||||
T Consensus         9 ~~~~y~~~~~lg~G~~g----~Vy~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~------h~~i   73 (278)
T 3cok_A            9 KIEDFKVGNLLGKGSFA----GVYRAESIH-----TGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLK------HPSI   73 (278)
T ss_dssp             SGGGEEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBC------CTTB
T ss_pred             ccccceeeeeecCCCce----EEEEEEEcc-----CCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCC------CCCe
Confidence            45789999999999999    999999987     799999999975322     256789999999984      9999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      +++++++.     +.+..++||| |+++++|.+++....        ..+++                    ..++.++.
T Consensus        74 ~~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~--------~~~~~--------------------~~~~~~~~  119 (278)
T 3cok_A           74 LELYNYFE-----DSNYVYLVLE-MCHNGEMNRYLKNRV--------KPFSE--------------------NEARHFMH  119 (278)
T ss_dssp             CCEEEEEE-----CSSEEEEEEE-CCTTEEHHHHHHTCS--------SCCCH--------------------HHHHHHHH
T ss_pred             EeEEEEEc-----cCCeEEEEEe-cCCCCcHHHHHhhcc--------CCCCH--------------------HHHHHHHH
Confidence            99999998     7889999999 999999999998642        13454                    45788999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHH
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRC  309 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWS  309 (667)
                      ||+.||.|||++||+||||||+||+++. ++.+||+|||++.....         +.+.|+|||.+ ....++.++||||
T Consensus       120 qi~~~l~~lH~~~i~H~dl~p~Nili~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~s  197 (278)
T 3cok_A          120 QIITGMLYLHSHGILHRDLTLSNLLLTR-NMNIKIADFGLATQLKMPHEKHYTLCGTPNYISPEIA-TRSAHGLESDVWS  197 (278)
T ss_dssp             HHHHHHHHHHHTTEECSSCCGGGEEECT-TCCEEECCCTTCEECC-----------------------------CTHHHH
T ss_pred             HHHHHHHHHHHCCeecCCCCHHHEEEcC-CCCEEEEeecceeeccCCCCcceeccCCCCcCCcchh-cCCCCCchhhHHH
Confidence            9999999999999999999999999998 89999999999986542         23679999955 4556899999999


Q ss_pred             HHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          310 VGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       310 LGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      |||++|+|++|++||....            ...   ......       .........+++++.+||.+||+.||++||
T Consensus       198 lG~il~~l~~g~~p~~~~~------------~~~---~~~~~~-------~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp  255 (278)
T 3cok_A          198 LGCMFYTLLIGRPPFDTDT------------VKN---TLNKVV-------LADYEMPSFLSIEAKDLIHQLLRRNPADRL  255 (278)
T ss_dssp             HHHHHHHHHHSSCSSCCCS------------CC--------CC-------SSCCCCCTTSCHHHHHHHHHHSCSSGGGSC
T ss_pred             HHHHHHHHHhCCCCCCChh------------HHH---HHHHHh-------hcccCCccccCHHHHHHHHHHcccCHhhCC
Confidence            9999999999999985211            000   000110       011223456789999999999999999999


Q ss_pred             CHHHHHcCCCCCCCC
Q 005958          390 SCLDALRHPFLCGPR  404 (667)
Q Consensus       390 Sa~elL~HPwf~~~~  404 (667)
                      |++++|+||||.+..
T Consensus       256 s~~~~l~h~~~~~~~  270 (278)
T 3cok_A          256 SLSSVLDHPFMSRNS  270 (278)
T ss_dssp             CHHHHTTSTTTC---
T ss_pred             CHHHHhcCccccCCC
Confidence            999999999998754

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=4.6e-43  Score=360.50  Aligned_cols=250  Identities=19%  Similarity=0.226  Sum_probs=204.3

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      .++|++.+.||+|+||    .||+|.+..     +++.||||++....   ..+.+.+|+.+++.+      .||||+++
T Consensus         6 ~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~   70 (276)
T 2yex_A            6 VEDWDLVQTLGEGAYG----EVQLAVNRV-----TEEAVAVKIVDMKRAVDCPENIKKEICINKML------NHENVVKF   70 (276)
T ss_dssp             HHHEEEEEEEEECSSS----EEEEEEETT-----TCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTC------CCTTBCCE
T ss_pred             ecceEEEEEeecCCCc----EEEEEEECC-----CCcEEEEEEeeeccchhhhHHHHHHHHHHHhc------CCCCceee
Confidence            4789999999999999    999999987     78999999997532   345678999999998      49999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     +.+..|+||| |+++|+|.+++....         .+++                    ..++.++.||+
T Consensus        71 ~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~~~~~~i~  115 (276)
T 2yex_A           71 YGHRR-----EGNIQYLFLE-YCSGGELFDRIEPDI---------GMPE--------------------PDAQRFFHQLM  115 (276)
T ss_dssp             EEEEE-----ETTEEEEEEE-CCTTEEGGGGSBTTT---------BCCH--------------------HHHHHHHHHHH
T ss_pred             eeEEE-----cCCEEEEEEE-ecCCCcHHHHHhhcc---------CCCH--------------------HHHHHHHHHHH
Confidence            99998     7789999999 999999999886543         3454                    45788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-----------CCCCCCCcccccCCCCCCchhhHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-----------DGPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-----------~~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      .||.|||++||+||||||+||+++. ++.+||+|||++.....           +.+.|+|||.+.+...++.++|||||
T Consensus       116 ~~l~~lH~~~i~H~dl~p~Nil~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~sl  194 (276)
T 2yex_A          116 AGVVYLHGIGITHRDIKPENLLLDE-RDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSC  194 (276)
T ss_dssp             HHHHHHHHTTEECSCCSGGGEEECT-TCCEEECCCTTCEECEETTEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHH
T ss_pred             HHHHHHHhCCeeccCCChHHEEEcc-CCCEEEeeCCCccccCCCcchhcccCCccccCccChHHHhcCCCCCCcchHHHH
Confidence            9999999999999999999999998 89999999999975432           23679999976665555889999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      ||++|+|++|+.||.....          .......+.    ...     ........+++++++||.+||+.||++|||
T Consensus       195 G~il~~l~~g~~p~~~~~~----------~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~li~~~l~~~p~~Rps  255 (276)
T 2yex_A          195 GIVLTAMLAGELPWDQPSD----------SCQEYSDWK----EKK-----TYLNPWKKIDSAPLALLHKILVENPSARIT  255 (276)
T ss_dssp             HHHHHHHHHSSCCCSCSCT----------TSHHHHHHH----TTC-----TTSTTGGGSCHHHHHHHHHHSCSSTTTSCC
T ss_pred             HHHHHHHHhCCCCCCCCch----------HHHHHHHhh----hcc-----cccCchhhcCHHHHHHHHHHCCCCchhCCC
Confidence            9999999999999953211          111111111    110     112234567899999999999999999999


Q ss_pred             HHHHHcCCCCCCCC
Q 005958          391 CLDALRHPFLCGPR  404 (667)
Q Consensus       391 a~elL~HPwf~~~~  404 (667)
                      ++|+++||||++..
T Consensus       256 ~~~il~~~~~~~~~  269 (276)
T 2yex_A          256 IPDIKKDRWYNKPL  269 (276)
T ss_dssp             HHHHTTCTTTTCCC
T ss_pred             HHHHhcCccccChh
Confidence            99999999998864

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=3.5e-42  Score=357.59  Aligned_cols=253  Identities=19%  Similarity=0.226  Sum_probs=201.9

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      ....|++.+.||+|+||    .||+|.+..     ++..||+|++...    ...+.+.+|+.+++.++      ||||+
T Consensus        24 ~~~~~~~~~~lg~G~~g----~Vy~~~~~~-----~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~------h~~iv   88 (290)
T 1t4h_A           24 DGRFLKFDIEIGRGSFK----TVYKGLDTE-----TTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQ------HPNIV   88 (290)
T ss_dssp             TSCEEEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCC------CTTBC
T ss_pred             CceeEEeeeeccCCCCe----EEEEeEecC-----CceEEEEEEecchhhCHHHHHHHHHHHHHHHhCC------CCCee
Confidence            34569999999999999    999999988     7999999998753    23345688999999994      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++.... .....+++||| |+++|+|.+++...+         .+++                    ..++.++.|
T Consensus        89 ~~~~~~~~~~-~~~~~~~lv~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~~~~~q  137 (290)
T 1t4h_A           89 RFYDSWESTV-KGKKCIVLVTE-LMTSGTLKTYLKRFK---------VMKI--------------------KVLRSWCRQ  137 (290)
T ss_dssp             CEEEEEEEES-SSCEEEEEEEE-CCCSCBHHHHHHHHS---------SCCH--------------------HHHHHHHHH
T ss_pred             eeeeeecccc-CCCceEEEEEE-ecCCCCHHHHHHHcc---------CCCH--------------------HHHHHHHHH
Confidence            9999987432 14577999999 999999999998754         4444                    457889999


Q ss_pred             HHHHHHHHHHCC--CcccCCCCCcEEEcCCCCeEEEeeecccccccCC-------CCCCCCcccccCCCCCCchhhHHHH
Q 005958          240 LLIGVNYLHSHG--LAHTELRLENVHISPVDRHIKVGILGNAADFYED-------GPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       240 Il~aL~yLHs~g--IvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-------~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      |+.||.|||++|  |+||||||+|||++..++.+||+|||++......       .+.|+|||++.  ..++.++|||||
T Consensus       138 i~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~t~~y~aPE~~~--~~~~~~~Di~sl  215 (290)
T 1t4h_A          138 ILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYE--EKYDESVDVYAF  215 (290)
T ss_dssp             HHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGG--TCCCTHHHHHHH
T ss_pred             HHHHHHHHHcCCCCEEECCCCHHHEEEECCCCCEEEeeCCCcccccccccccccCCcCcCCHHHHh--ccCCCcchHHHH
Confidence            999999999999  9999999999999844889999999999754432       37899999654  348999999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      ||++|+|++|+.||....           ........   .....     .........++++.+||.+||+.||++|||
T Consensus       216 G~~l~~l~~g~~pf~~~~-----------~~~~~~~~---~~~~~-----~~~~~~~~~~~~l~~li~~~l~~dp~~Rps  276 (290)
T 1t4h_A          216 GMCMLEMATSEYPYSECQ-----------NAAQIYRR---VTSGV-----KPASFDKVAIPEVKEIIEGCIRQNKDERYS  276 (290)
T ss_dssp             HHHHHHHHHSSCTTTTCS-----------SHHHHHHH---HTTTC-----CCGGGGGCCCHHHHHHHHHHSCSSGGGSCC
T ss_pred             HHHHHHHHhCCCCCCCcC-----------cHHHHHHH---HhccC-----CccccCCCCCHHHHHHHHHHccCChhhCCC
Confidence            999999999999995321           11111111   11111     112234456789999999999999999999


Q ss_pred             HHHHHcCCCCCCC
Q 005958          391 CLDALRHPFLCGP  403 (667)
Q Consensus       391 a~elL~HPwf~~~  403 (667)
                      ++|+|+||||++.
T Consensus       277 ~~ell~h~~f~~~  289 (290)
T 1t4h_A          277 IKDLLNHAFFQEE  289 (290)
T ss_dssp             HHHHHTSGGGC--
T ss_pred             HHHHhhCcccccC
Confidence            9999999999873

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=8e-43  Score=391.41  Aligned_cols=248  Identities=18%  Similarity=0.215  Sum_probs=201.6

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ++|++++.||+|+||    +||+|+++.     ++..||||++....    ....+.+|+.+++.+      .||||+++
T Consensus        37 ~~y~~~~~lG~G~~g----~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l------~hpniv~~  101 (494)
T 3lij_A           37 EMYQRVKKLGSGAYG----EVLLCRDKV-----THVERAIKIIRKTSVSTSSNSKLLEEVAVLKLL------DHPNIMKL  101 (494)
T ss_dssp             HHEEEEEEEECC-------EEEEEEETT-----TCCEEEEEEEEC-----CTTHHHHHHHHHHTTC------CCTTBCCE
T ss_pred             cCeEEeeEEecCCCE----EEEEEEECC-----CCcEEEEEEEeccccCchHHHHHHHHHHHHHhC------CCCCCCeE
Confidence            579999999999999    999999998     89999999997532    345678999999999      49999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     +.+.+|+||| ||.+|+|.+++....         .+++                    ..++.++.||+
T Consensus       102 ~~~~~-----~~~~~~lv~e-~~~~g~L~~~~~~~~---------~~~~--------------------~~~~~i~~qi~  146 (494)
T 3lij_A          102 YDFFE-----DKRNYYLVME-CYKGGELFDEIIHRM---------KFNE--------------------VDAAVIIKQVL  146 (494)
T ss_dssp             EEEEE-----CSSEEEEEEE-CCCSCBHHHHHHHHS---------SCCH--------------------HHHHHHHHHHH
T ss_pred             EEEEE-----eCCEEEEEEe-cCCCCcHHHHHHHcC---------CCCH--------------------HHHHHHHHHHH
Confidence            99999     7889999999 999999999998754         4555                    45678999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCC--CCeEEEeeecccccccC--------CCCCCCCcccccCCCCCCchhhHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPV--DRHIKVGILGNAADFYE--------DGPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~--~~~vKL~DFGlA~~~~~--------~~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      .||.|||++||+||||||+|||++..  ++.+||+|||+|..+..        +.+.|+|||++.  ..|+.++||||+|
T Consensus       147 ~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~--~~~~~~~DiwslG  224 (494)
T 3lij_A          147 SGVTYLHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKMKERLGTAYYIAPEVLR--KKYDEKCDVWSIG  224 (494)
T ss_dssp             HHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTTBCBCCCCSCTTTCCHHHHT--TCBCTHHHHHHHH
T ss_pred             HHHHHHHHCCceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCCccccccCCCcCeeCHHHHc--ccCCCchhHHHHH
Confidence            99999999999999999999999762  35699999999976543        237899999653  4599999999999


Q ss_pred             HHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH
Q 005958          312 FMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC  391 (667)
Q Consensus       312 viLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa  391 (667)
                      |++|+|++|.+||.            +.....+...+.   .....   ...+.+..+++++++||.+||++||++|||+
T Consensus       225 ~il~~ll~g~~pf~------------~~~~~~~~~~i~---~~~~~---~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~  286 (494)
T 3lij_A          225 VILFILLAGYPPFG------------GQTDQEILRKVE---KGKYT---FDSPEWKNVSEGAKDLIKQMLQFDSQRRISA  286 (494)
T ss_dssp             HHHHHHHHSSCSSC------------CSSHHHHHHHHH---HTCCC---CCSGGGTTSCHHHHHHHHHHTCSSTTTSCCH
T ss_pred             HHHHHHHhCCCCCC------------CCCHHHHHHHHH---hCCCC---CCchhcccCCHHHHHHHHHHCCCChhhCccH
Confidence            99999999999995            223333222222   21111   1123456789999999999999999999999


Q ss_pred             HHHHcCCCCCCC
Q 005958          392 LDALRHPFLCGP  403 (667)
Q Consensus       392 ~elL~HPwf~~~  403 (667)
                      .|+|+||||+..
T Consensus       287 ~e~l~hp~~~~~  298 (494)
T 3lij_A          287 QQALEHPWIKEM  298 (494)
T ss_dssp             HHHHTCHHHHHH
T ss_pred             HHHhcCcccccC
Confidence            999999999763

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=3e-43  Score=387.15  Aligned_cols=252  Identities=21%  Similarity=0.260  Sum_probs=199.4

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh----------HHHHHHHHHHHHHHhhccCCC
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA----------QRRGRRAIEVLKKLVRRRLMY  154 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~----------~~~~~rEi~iL~~L~~~~~~~  154 (667)
                      .++|++.+.||+|+||    +||+|.+..     +++.||||++.....          ...+.+|+.+|++++      
T Consensus       134 ~~~y~~~~~LG~G~~g----~V~~a~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~------  198 (419)
T 3i6u_A          134 RDEYIMSKTLGSGACG----EVKLAFERK-----TCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLN------  198 (419)
T ss_dssp             HTTEEEEEEEEECSSS----EEEEEEETT-----TCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCC------
T ss_pred             hccEEEEeEEeeCCCe----EEEEEEECC-----CCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCC------
Confidence            5789999999999999    999999998     899999999975321          113578999999994      


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      ||||+++++++.      .+..|+||| |+++|+|.+++...+         .+++                    ..++
T Consensus       199 hpniv~l~~~~~------~~~~~lv~e-~~~~g~L~~~l~~~~---------~~~~--------------------~~~~  242 (419)
T 3i6u_A          199 HPCIIKIKNFFD------AEDYYIVLE-LMEGGELFDKVVGNK---------RLKE--------------------ATCK  242 (419)
T ss_dssp             CTTBCCCCEEEE------SSEEEEEEE-CCTTCBGGGGTSSSC---------CCCH--------------------HHHH
T ss_pred             CCCEeeEEEEEe------cCceEEEEE-cCCCCcHHHHHhccC---------CCCH--------------------HHHH
Confidence            999999999986      345899999 999999999887644         4554                    4577


Q ss_pred             HHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCC--CCeEEEeeecccccccCC--------CCCCCCcccccC--CCCCC
Q 005958          235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPV--DRHIKVGILGNAADFYED--------GPNNSSPDSNMD--RRQMM  302 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~--~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~--~~~ys  302 (667)
                      .++.||+.||+|||++||+||||||+|||++..  +..+||+|||+|+.....        .+.|+|||++.+  ...|+
T Consensus       243 ~i~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  322 (419)
T 3i6u_A          243 LYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYN  322 (419)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSSSCCEEECCSSTTTSCC-----------CTTCCTTTTC----CTTH
T ss_pred             HHHHHHHHHHHHHHHCCccccCCChHhEEEecCCCcceEEEeecccceecCCCccccccCCCCCccCceeeecCCCCCCC
Confidence            899999999999999999999999999999752  346999999999876543        378999997653  46788


Q ss_pred             chhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhh
Q 005958          303 IAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLA  382 (667)
Q Consensus       303 ~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~  382 (667)
                      .++|||||||++|+|++|.+||....           ....+.+.+...   ...   .....+..+++++++||.+||+
T Consensus       323 ~~~DiwslG~il~~lltg~~pf~~~~-----------~~~~~~~~i~~~---~~~---~~~~~~~~~~~~~~~li~~~L~  385 (419)
T 3i6u_A          323 RAVDCWSLGVILFICLSGYPPFSEHR-----------TQVSLKDQITSG---KYN---FIPEVWAEVSEKALDLVKKLLV  385 (419)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCSSCCCS-----------SSCCHHHHHHTT---CCC---CCHHHHTTSCHHHHHHHHHHSC
T ss_pred             chhhhHhHHHHHHHHHHCCCCCCCCc-----------chHHHHHHHhcC---CCC---CCchhhcccCHHHHHHHHHHcc
Confidence            99999999999999999999996321           111122221111   000   0112335678999999999999


Q ss_pred             cCcCCCCCHHHHHcCCCCCCCC
Q 005958          383 TKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       383 ~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      .||++|||++|+|+||||++..
T Consensus       386 ~dP~~Rps~~e~l~hp~~~~~~  407 (419)
T 3i6u_A          386 VDPKARFTTEEALRHPWLQDED  407 (419)
T ss_dssp             SSTTTSCCHHHHHHSGGGCCHH
T ss_pred             CChhHCcCHHHHhCCcccCChh
Confidence            9999999999999999998744

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=1.5e-42  Score=374.54  Aligned_cols=250  Identities=19%  Similarity=0.267  Sum_probs=204.4

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----------hHHHHHHHHHHHHHHhhccCCC
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----------AQRRGRRAIEVLKKLVRRRLMY  154 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----------~~~~~~rEi~iL~~L~~~~~~~  154 (667)
                      .++|++.+.||+|+||    .||+|.+..     +|+.||||++....          ..+.+.+|+.+++++.     +
T Consensus        93 ~~~y~~~~~lg~G~~g----~Vy~a~~~~-----~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-----~  158 (365)
T 2y7j_A           93 YQKYDPKDVIGRGVSS----VVRRCVHRA-----TGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVA-----G  158 (365)
T ss_dssp             HHHEEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHT-----T
T ss_pred             hhhcccceEEecCCCE----EEEEEEECC-----CCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhc-----C
Confidence            3679999999999999    999999987     79999999987532          1345689999999995     5


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      ||||+++++++.     ..+..|+||| |+++|+|.+++....         .+++                    ..++
T Consensus       159 hp~iv~~~~~~~-----~~~~~~lv~e-~~~g~~L~~~l~~~~---------~l~~--------------------~~~~  203 (365)
T 2y7j_A          159 HPHIITLIDSYE-----SSSFMFLVFD-LMRKGELFDYLTEKV---------ALSE--------------------KETR  203 (365)
T ss_dssp             CTTBCCEEEEEE-----BSSEEEEEEC-CCTTCBHHHHHHHHS---------SCCH--------------------HHHH
T ss_pred             CCCEeEEEEEEe-----eCCEEEEEEE-eCCCCcHHHHHHhcC---------CCCH--------------------HHHH
Confidence            999999999998     7789999999 999999999998653         4554                    4578


Q ss_pred             HHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccC-----CCCC
Q 005958          235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMD-----RRQM  301 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~-----~~~y  301 (667)
                      .++.||+.||.|||++||+||||||+|||++. ++.+||+|||++..+...        .+.|+|||++.+     ...|
T Consensus       204 ~i~~qi~~~L~~LH~~gi~H~Dlkp~NIl~~~-~~~ikl~DfG~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~  282 (365)
T 2y7j_A          204 SIMRSLLEAVSFLHANNIVHRDLKPENILLDD-NMQIRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILKCSMDETHPGY  282 (365)
T ss_dssp             HHHHHHHHHHHHHHHTTEECSCCSGGGEEECT-TCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHTTCTTSCCB
T ss_pred             HHHHHHHHHHHHHHhCCeecCCCCHHHEEECC-CCCEEEEecCcccccCCCcccccCCCCCCccChhhccccccccCcCC
Confidence            89999999999999999999999999999998 899999999999866533        367999997652     3458


Q ss_pred             CchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhh
Q 005958          302 MIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLL  381 (667)
Q Consensus       302 s~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L  381 (667)
                      +.++|||||||++|+|++|.+||...            ........+.   .....   ...+.+...++++.+||.+||
T Consensus       283 ~~~~Di~slG~il~ell~g~~pf~~~------------~~~~~~~~i~---~~~~~---~~~~~~~~~~~~~~~li~~~L  344 (365)
T 2y7j_A          283 GKEVDLWACGVILFTLLAGSPPFWHR------------RQILMLRMIM---EGQYQ---FSSPEWDDRSSTVKDLISRLL  344 (365)
T ss_dssp             CTTHHHHHHHHHHHHHHHSSCSSCCS------------SHHHHHHHHH---HTCCC---CCHHHHSSSCHHHHHHHHHHS
T ss_pred             CchhhHHhHHHHHHHHHHCCCCCCCC------------CHHHHHHHHH---hCCCC---CCCcccccCCHHHHHHHHHHc
Confidence            89999999999999999999998521            2222222211   11111   112234567889999999999


Q ss_pred             hcCcCCCCCHHHHHcCCCCCC
Q 005958          382 ATKPSKRISCLDALRHPFLCG  402 (667)
Q Consensus       382 ~~DP~kRpSa~elL~HPwf~~  402 (667)
                      +.||++|||++|+|+||||+.
T Consensus       345 ~~dP~~Rps~~ell~hp~f~r  365 (365)
T 2y7j_A          345 QVDPEARLTAEQALQHPFFER  365 (365)
T ss_dssp             CSSTTTSCCHHHHHHSGGGCC
T ss_pred             CCChhHCcCHHHHhcCcccCC
Confidence            999999999999999999973

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=3.1e-43  Score=364.38  Aligned_cols=256  Identities=14%  Similarity=0.192  Sum_probs=190.9

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh---HHHHHHHHH-HHHHHhhccCCCCCc
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA---QRRGRRAIE-VLKKLVRRRLMYHSY  157 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~---~~~~~rEi~-iL~~L~~~~~~~Hpn  157 (667)
                      ++..++|++.+.||+|+||    +||+|++..     +++.||+|++.....   ......|.. .++.+      .|||
T Consensus         3 ~i~~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~   67 (290)
T 3fme_A            3 EVKADDLEPIMELGRGAYG----VVEKMRHVP-----SGQIMAVKRIRATVNSQEQKRLLMDLDISMRTV------DCPF   67 (290)
T ss_dssp             CCCGGGEEEEEEEEECSSE----EEEEEEETT-----TTEEEEEEEEC---CHHHHHHHHHHHHHHHTTC------CCTT
T ss_pred             cccHHhhhhHHhcCCCCCe----EEEEEEecC-----CCeEEEEEEeecccCcHHHHHHHHHHHHHHHhC------CCCe
Confidence            4567899999999999999    999999987     799999999975322   222233333 34444      6999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     ..+..++||| |+++ +|.+++....     .....+++                    ..++.++
T Consensus        68 iv~~~~~~~-----~~~~~~lv~e-~~~~-~l~~~l~~~~-----~~~~~~~~--------------------~~~~~i~  115 (290)
T 3fme_A           68 TVTFYGALF-----REGDVWICME-LMDT-SLDKFYKQVI-----DKGQTIPE--------------------DILGKIA  115 (290)
T ss_dssp             BCCEEEEEE-----CSSSEEEEEE-CCSE-EHHHHHHHHH-----HTTCCCCH--------------------HHHHHHH
T ss_pred             EEEEeeeee-----ccCCEEEEEe-hhcc-chHHHHHHHH-----hcCCCCCH--------------------HHHHHHH
Confidence            999999999     7788999999 9986 9988886521     00124444                    5678899


Q ss_pred             HHHHHHHHHHHHC-CCcccCCCCCcEEEcCCCCeEEEeeecccccccC--------CCCCCCCcccc---cCCCCCCchh
Q 005958          238 RDLLIGVNYLHSH-GLAHTELRLENVHISPVDRHIKVGILGNAADFYE--------DGPNNSSPDSN---MDRRQMMIAF  305 (667)
Q Consensus       238 ~QIl~aL~yLHs~-gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~--------~~~~Y~APE~l---~~~~~ys~ks  305 (667)
                      .||+.||.|||++ ||+||||||+|||++. ++.+||+|||++.....        +.+.|+|||++   .....++.++
T Consensus       116 ~qi~~~l~~lH~~~~i~H~dlkp~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~  194 (290)
T 3fme_A          116 VSIVKALEHLHSKLSVIHRDVKPSNVLINA-LGQVKMCDFGISGYLVDDVAKDIDAGCKPYMAPERINPELNQKGYSVKS  194 (290)
T ss_dssp             HHHHHHHHHHHHHSCCCCCCCSGGGCEECT-TCCEEBCCC---------------CCCCCCSCHHHHSCCTTC--CCHHH
T ss_pred             HHHHHHHHHHhhcCCeecCCCCHHHEEECC-CCCEEEeecCCcccccccccccccCCCccccChhhcChhhcCcCCCcHH
Confidence            9999999999998 9999999999999998 89999999999975533        33779999976   4566789999


Q ss_pred             hHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCc
Q 005958          306 DMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       306 DIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      |||||||++|+|++|+.||...          +.+...+.....    ...+     ......+++++.+||.+||+.||
T Consensus       195 Di~slG~il~~l~~g~~p~~~~----------~~~~~~~~~~~~----~~~~-----~~~~~~~~~~~~~li~~~l~~~p  255 (290)
T 3fme_A          195 DIWSLGITMIELAILRFPYDSW----------GTPFQQLKQVVE----EPSP-----QLPADKFSAEFVDFTSQCLKKNS  255 (290)
T ss_dssp             HHHHHHHHHHHHHHTSCSSCCC----------SCHHHHHHHHHH----SCCC-----CCCTTTSCHHHHHHHHHHTCSSG
T ss_pred             HHHHHHHHHHHHHHCCCCcccc----------CchHHHHHHHhc----cCCC-----CcccccCCHHHHHHHHHHhhcCh
Confidence            9999999999999999998521          111122222221    1111     11124578899999999999999


Q ss_pred             CCCCCHHHHHcCCCCCCCC
Q 005958          386 SKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       386 ~kRpSa~elL~HPwf~~~~  404 (667)
                      ++|||+.|+++||||+...
T Consensus       256 ~~Rpt~~e~l~hp~f~~~~  274 (290)
T 3fme_A          256 KERPTYPELMQHPFFTLHE  274 (290)
T ss_dssp             GGSCCHHHHTTSHHHHHHH
T ss_pred             hhCcCHHHHHhCcccccCc
Confidence            9999999999999997643

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=7.5e-43  Score=377.26  Aligned_cols=281  Identities=16%  Similarity=0.195  Sum_probs=206.3

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhcc--CCCCCc
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRR--LMYHSY  157 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~--~~~Hpn  157 (667)
                      .....++|++.+.||+|+||    +||+|++..     +++.||||++.... ..+.+.+|+.+++.+++..  ..+|+|
T Consensus        32 g~~~~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~  102 (397)
T 1wak_A           32 GDLFNGRYHVIRKLGWGHFS----TVWLSWDIQ-----GKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREM  102 (397)
T ss_dssp             TCEETTTEEEEEEEEECSSE----EEEEEEETT-----TTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHSCTTCGGGGG
T ss_pred             hhhcCCeEEEEEEeeecCCe----eEEEEEecC-----CCeEEEEEEEecCCcchHHHHHHHHHHHHHhhcCCCCCCcce
Confidence            34456899999999999999    999999987     79999999997643 3456789999999996421  123889


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.... .....+|+||| |+++ +|.+++.....       ..+++                    ..++.++
T Consensus       103 iv~~~~~~~~~~-~~~~~~~lv~e-~~~~-~l~~~~~~~~~-------~~~~~--------------------~~~~~i~  152 (397)
T 1wak_A          103 VVQLLDDFKISG-VNGTHICMVFE-VLGH-HLLKWIIKSNY-------QGLPL--------------------PCVKKII  152 (397)
T ss_dssp             BCCEEEEEEEEE-TTEEEEEEEEC-CCCC-BHHHHHHHTTT-------SCCCH--------------------HHHHHHH
T ss_pred             eeeeecceeecC-CCCceEEEEEe-ccCc-cHHHHHHhccc-------CCCCH--------------------HHHHHHH
Confidence            999999987331 14568999999 9966 88887765421       13444                    5678899


Q ss_pred             HHHHHHHHHHHHC-CCcccCCCCCcEEEcCCCC-----------------------------------------------
Q 005958          238 RDLLIGVNYLHSH-GLAHTELRLENVHISPVDR-----------------------------------------------  269 (667)
Q Consensus       238 ~QIl~aL~yLHs~-gIvHrDLKPeNILl~~~~~-----------------------------------------------  269 (667)
                      .||+.||.|||++ ||+||||||+|||++. ++                                               
T Consensus       153 ~qi~~aL~~lH~~~givHrDikp~NIll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (397)
T 1wak_A          153 QQVLQGLDYLHTKCRIIHTDIKPENILLSV-NEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAE  231 (397)
T ss_dssp             HHHHHHHHHHHHTTCEECCCCSGGGEEECC-CHHHHHHHHHHHC---------------------CCTTSCCTTSGGGGG
T ss_pred             HHHHHHHHHHHHhCCEecCCCCHHHeeEec-cchhhhhhhhhhHHHhhcCCCCCCCCccccCCccccccccccccccccc
Confidence            9999999999999 9999999999999986 43                                               


Q ss_pred             --eEEEeeecccccccCC------CCCCCCcccccCCCCCCchhhHHHHHHHHHHHHhCCCCChh---------hhhhhh
Q 005958          270 --HIKVGILGNAADFYED------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPL---------IFTKFK  332 (667)
Q Consensus       270 --~vKL~DFGlA~~~~~~------~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG~~PF~~---------~~~~~~  332 (667)
                        .+||+|||+|......      .+.|+|||++.+ ..|+.++|||||||++|||++|++||..         ..+...
T Consensus       232 ~~~~kl~DfG~a~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~  310 (397)
T 1wak_A          232 KLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIG-SGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIAL  310 (397)
T ss_dssp             GCCEEECCGGGCEETTBCSCSCCSCGGGCCHHHHHT-SCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHH
T ss_pred             ccceEeccccccccccccCccCCCCCcccCChhhcC-CCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHH
Confidence              7999999999765433      367999996655 4599999999999999999999999962         222233


Q ss_pred             hhhccCCChhHHHHHHHHHhccCCCCC-CC----------------CcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHH
Q 005958          333 SFLTKGIDPSCLREFLLQVLNRNSSSG-NT----------------GFQILDRNWGAGWNLLSLLLATKPSKRISCLDAL  395 (667)
Q Consensus       333 ~~~~~g~~~~~l~~~~~~~~~~~~~~~-~~----------------~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL  395 (667)
                      +....|..+..+...-........... ..                ........++++++||.+||++||++|||++|+|
T Consensus       311 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l  390 (397)
T 1wak_A          311 IIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECL  390 (397)
T ss_dssp             HHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHH
T ss_pred             HHHhcCCCChHHhhcccccccccCCccccccccccCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHh
Confidence            333344433322111000000000000 00                0011223456889999999999999999999999


Q ss_pred             cCCCCCC
Q 005958          396 RHPFLCG  402 (667)
Q Consensus       396 ~HPwf~~  402 (667)
                      +||||++
T Consensus       391 ~hp~~~~  397 (397)
T 1wak_A          391 RHPWLNS  397 (397)
T ss_dssp             TSGGGGC
T ss_pred             hCccccC
Confidence            9999974

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=3.2e-42  Score=363.51  Aligned_cols=276  Identities=20%  Similarity=0.230  Sum_probs=208.5

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ....++|++.+.||+|+||    .||+|.+...    +++.||||++... ...+...+|+++++.+.+.....|++|++
T Consensus        10 ~~~~~~y~~~~~lg~G~~g----~V~~~~~~~~----~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~   81 (339)
T 1z57_A           10 DVLSARYEIVDTLGEGAFG----KVVECIDHKA----GGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQ   81 (339)
T ss_dssp             CEETTTEEEEEEEEEETTE----EEEEEEETTT----TTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHCTTCTTCBCC
T ss_pred             CCccCceEEEEEEecCCCe----EEEEEEecCC----CCcEEEEEEEecCCchhHHHHHHHHHHHHhhhcCCCCceeeEe
Confidence            3456899999999999999    9999998432    6899999999753 33456789999999998666667778999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     ..+.+++||| |+ +++|.+++...+.       ..+++                    ..++.++.||
T Consensus        82 ~~~~~~-----~~~~~~lv~e-~~-~~~l~~~l~~~~~-------~~~~~--------------------~~~~~~~~qi  127 (339)
T 1z57_A           82 MLEWFE-----HHGHICIVFE-LL-GLSTYDFIKENGF-------LPFRL--------------------DHIRKMAYQI  127 (339)
T ss_dssp             EEEEEE-----ETTEEEEEEE-CC-CCBHHHHHHHTTT-------CCCCH--------------------HHHHHHHHHH
T ss_pred             eecccc-----cCCcEEEEEc-CC-CCCHHHHHHhcCC-------CCCcH--------------------HHHHHHHHHH
Confidence            999998     7789999999 99 5599999987541       13443                    5678899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCC------------------CCeEEEeeecccccccCC------CCCCCCccccc
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPV------------------DRHIKVGILGNAADFYED------GPNNSSPDSNM  296 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~------------------~~~vKL~DFGlA~~~~~~------~~~Y~APE~l~  296 (667)
                      +.||+|||++||+||||||+|||++..                  ++.+||+|||++......      .+.|+|||++.
T Consensus       128 ~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~  207 (339)
T 1z57_A          128 CKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVIL  207 (339)
T ss_dssp             HHHHHHHHHTTEECCCCCGGGEEESCCCEEEEEC----CEEEEESCCCEEECCCSSCEETTSCCCSSCSCGGGCCHHHHT
T ss_pred             HHHHHHHHHCCCcCCCCCHHHEEEeccccccccCCccccccccccCCCceEeeCcccccCccccccccCCccccChHHhh
Confidence            999999999999999999999999862                  357999999999865433      36799999654


Q ss_pred             CCCCCCchhhHHHHHHHHHHHHhCCCCChhhh---hhhhhhhccCCChhHHHHH-----------------------HHH
Q 005958          297 DRRQMMIAFDMRCVGFMMAKMVLRELMDPLIF---TKFKSFLTKGIDPSCLREF-----------------------LLQ  350 (667)
Q Consensus       297 ~~~~ys~ksDIWSLGviLyemltG~~PF~~~~---~~~~~~~~~g~~~~~l~~~-----------------------~~~  350 (667)
                       ...|+.++|||||||++|||++|.+||+...   .........+..+..+...                       ...
T Consensus       208 -~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (339)
T 1z57_A          208 -ALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSR  286 (339)
T ss_dssp             -TSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHHHHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHH
T ss_pred             -CCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhh
Confidence             4568999999999999999999999997321   1111112222222221111                       000


Q ss_pred             HhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          351 VLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      ....    ...........++++.+||.+||+.||++|||++|+|+||||+..+
T Consensus       287 ~~~~----~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~  336 (339)
T 1z57_A          287 ACKP----LKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALKHPFFDLLK  336 (339)
T ss_dssp             HCCC----GGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTSGGGGGGG
T ss_pred             cCcc----hhhhcccchhhHHHHHHHHHHHhCcCcccccCHHHHhcCHHHHHHh
Confidence            0000    0000111223457899999999999999999999999999998754

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=5.3e-43  Score=375.63  Aligned_cols=266  Identities=16%  Similarity=0.197  Sum_probs=208.1

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      .+..++|++.+.||+|+||    .||+|.+..     +++.||+|++...   ...+.+.+|+.+++.+      +||||
T Consensus        29 ~~~~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i   93 (360)
T 3eqc_A           29 ELKDDDFEKISELGAGNGG----VVFKVSHKP-----SGLVMARKLIHLEIKPAIRNQIIRELQVLHEC------NSPYI   93 (360)
T ss_dssp             CCCGGGEEEEEEEEECSSC----EEEEEEETT-----TCCEEEEEEEECCCCHHHHHHHHHHHGGGGGC------CCTTB
T ss_pred             ccccccceeeeeecCCCCe----EEEEEEECC-----CCcEEEEEEeccccCHHHHHHHHHHHHHHHHC------CCCCE
Confidence            4556899999999999999    999999997     7999999999753   2345678999999998      49999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      +++++++.     ..+.+|+||| |+++|+|.+++...+         .+++                    ..++.++.
T Consensus        94 v~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~~i~~  138 (360)
T 3eqc_A           94 VGFYGAFY-----SDGEISICME-HMDGGSLDQVLKKAG---------RIPE--------------------QILGKVSI  138 (360)
T ss_dssp             CCEEEEEE-----ETTEEEEEEC-CCTTCBHHHHHHHHS---------SCCH--------------------HHHHHHHH
T ss_pred             EEEeEEEE-----ECCEEEEEEE-CCCCCCHHHHHHHcC---------CCCH--------------------HHHHHHHH
Confidence            99999998     6789999999 999999999998754         4554                    45778999


Q ss_pred             HHHHHHHHHHHC-CCcccCCCCCcEEEcCCCCeEEEeeeccccccc-------CCCCCCCCcccccCCCCCCchhhHHHH
Q 005958          239 DLLIGVNYLHSH-GLAHTELRLENVHISPVDRHIKVGILGNAADFY-------EDGPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       239 QIl~aL~yLHs~-gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~-------~~~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      ||+.||.|||++ ||+||||||+|||++. ++.+||+|||++....       .+.+.|+|||++. ...|+.++|||||
T Consensus       139 ~i~~~l~~lh~~~~i~H~dlkp~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~Di~sl  216 (360)
T 3eqc_A          139 AVIKGLTYLREKHKIMHRDVKPSNILVNS-RGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQ-GTHYSVQSDIWSM  216 (360)
T ss_dssp             HHHHHHHHHHHHHCCCCSCCSGGGEEECT-TCCEEECCCCCCHHHHHHC----CCCCTTCCHHHHT-TCCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCEEcCCccHHHEEECC-CCCEEEEECCCCcccccccccCCCCCCCeECHHHHc-CCCCCchhhHHHH
Confidence            999999999996 9999999999999998 8999999999986432       2347899999654 4569999999999


Q ss_pred             HHHHHHHHhCCCCChhhh--hhhhhhh-------------------------ccCCChhHHHHHHHHHhccCCCCCCCCc
Q 005958          311 GFMMAKMVLRELMDPLIF--TKFKSFL-------------------------TKGIDPSCLREFLLQVLNRNSSSGNTGF  363 (667)
Q Consensus       311 GviLyemltG~~PF~~~~--~~~~~~~-------------------------~~g~~~~~l~~~~~~~~~~~~~~~~~~~  363 (667)
                      ||++|+|++|+.||....  .....+.                         ....+.....+.+........+.     
T Consensus       217 G~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  291 (360)
T 3eqc_A          217 GLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFELLDYIVNEPPPK-----  291 (360)
T ss_dssp             HHHHHHHHHTSCCSSCCCHHHHHHHHC------------------------------CCCHHHHHHHHHHSCCCC-----
T ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCCcccccccCCCCcccchhhhhHHhccCCCC-----
Confidence            999999999999997321  1110000                         00001111122222222222111     


Q ss_pred             ccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          364 QILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       364 ~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      .....+++++++||.+||++||++|||++|+|+||||++..
T Consensus       292 ~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~  332 (360)
T 3eqc_A          292 LPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSD  332 (360)
T ss_dssp             CCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTSHHHHHHH
T ss_pred             CCcccccHHHHHHHHHHhhcChhhCCCHHHHhhChHhhcch
Confidence            11234688999999999999999999999999999998755

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=1.3e-42  Score=378.59  Aligned_cols=253  Identities=20%  Similarity=0.269  Sum_probs=199.6

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCC
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      ..+...+|++++.||+|+||    +||+|.+.      +++.||||++...    ...+.+.+|+.+|+++++    .||
T Consensus        51 ~~~~~~~y~~~~~LG~G~fg----~Vy~~~~~------~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~----~~~  116 (390)
T 2zmd_A           51 ISVKGRIYSILKQIGSGGSS----KVFQVLNE------KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQ----HSD  116 (390)
T ss_dssp             EEETTEEEEEEEEEECCSSE----EEEEEECT------TCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTT----TCT
T ss_pred             ccccCCceEEEEEEccCCCe----EEEEEEcC------CCCEEEEEEEecccccHHHHHHHHHHHHHHHHccc----CCC
Confidence            34455679999999999999    99999876      4889999999753    233567899999999962    269


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++.     ..+.+||||| +.++ +|.+++....         .+++                    ..++.+
T Consensus       117 ~iv~~~~~~~-----~~~~~~lv~E-~~~~-~L~~~l~~~~---------~~~~--------------------~~~~~i  160 (390)
T 2zmd_A          117 KIIRLYDYEI-----TDQYIYMVME-CGNI-DLNSWLKKKK---------SIDP--------------------WERKSY  160 (390)
T ss_dssp             TBCCEEEEEE-----CSSEEEEEEE-CCSE-EHHHHHHHCS---------SCCH--------------------HHHHHH
T ss_pred             eEEEEEEEEe-----cCCEEEEEEe-cCCC-CHHHHHHhcC---------CCCH--------------------HHHHHH
Confidence            9999999998     7788999999 7655 9999998754         4444                    356789


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-----------CCCCCCCcccccC--------
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-----------DGPNNSSPDSNMD--------  297 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-----------~~~~Y~APE~l~~--------  297 (667)
                      +.||+.||.|||++||+||||||+|||++  ++.+||+|||+|+.+..           +.+.|+|||++.+        
T Consensus       161 ~~qi~~aL~~lH~~~ivHrDlkp~NIll~--~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~  238 (390)
T 2zmd_A          161 WKNMLEAVHTIHQHGIVHSDLKPANFLIV--DGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENG  238 (390)
T ss_dssp             HHHHHHHHHHHHTTTCCCCCCCGGGEEES--SSCEEECCCSSSCCC---------CCSCCCGGGCCHHHHHCC-------
T ss_pred             HHHHHHHHHHHHHCCeeecCCCHHHEEEE--CCeEEEEecCccccccCCCccccCCCCCcCCCccChHHhhhcccccccc
Confidence            99999999999999999999999999996  58999999999986532           2377999997654        


Q ss_pred             --CCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHH
Q 005958          298 --RRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWN  375 (667)
Q Consensus       298 --~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~d  375 (667)
                        ...|+.++|||||||++|||++|++||.....           .   ...+..+.....     ........++++++
T Consensus       239 ~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~-----------~---~~~~~~~~~~~~-----~~~~~~~~~~~~~~  299 (390)
T 2zmd_A          239 KSKSKISPKSDVWSLGCILYYMTYGKTPFQQIIN-----------Q---ISKLHAIIDPNH-----EIEFPDIPEKDLQD  299 (390)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHSSCTTTTCCC-----------H---HHHHHHHHCTTS-----CCCCCCCSCHHHHH
T ss_pred             ccccCCCChhhHHHHHHHHHHHHHCCCcchhhhH-----------H---HHHHHHHhCccc-----cCCCCccchHHHHH
Confidence              24689999999999999999999999953211           1   011112221111     12223445789999


Q ss_pred             HHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          376 LLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       376 LI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      ||.+||+.||++|||+.|+|+||||+...
T Consensus       300 li~~~L~~dP~~Rps~~ell~hp~~~~~~  328 (390)
T 2zmd_A          300 VLKCCLKRDPKQRISIPELLAHPYVQIQT  328 (390)
T ss_dssp             HHHHHTCSSTTTSCCHHHHHTSHHHHSCC
T ss_pred             HHHHHcccChhhCCCHHHHhhCcCccccC
Confidence            99999999999999999999999998654

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=1.4e-42  Score=375.06  Aligned_cols=271  Identities=21%  Similarity=0.261  Sum_probs=206.0

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ++|++.+.||+|+||    .||+|.+..     +++.||||++...    ...+.+.+|+.+++.++      ||||+++
T Consensus        42 ~~y~~~~~lG~G~~g----~Vy~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~------h~niv~~  106 (371)
T 4exu_A           42 KTYVSPTHVGSGAYG----SVCSAIDKR-----SGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQ------HENVIGL  106 (371)
T ss_dssp             TTEEEEEEEEECSSE----EEEEEEETT-----TTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCC------CTTBCCC
T ss_pred             ccEEEEeEEecCCCe----EEEEEEECC-----CCCEEEEEEecccccchhHHHHHHHHHHHHHhcC------CCCchhh
Confidence            789999999999999    999999998     8999999999752    22356689999999995      9999999


Q ss_pred             EEEEEeccc-CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          162 HGYVSSHTT-SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       162 ~~~~~~~~~-~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      ++++..... .....+|+||| |+++ +|.+++..           .+++                    ..++.++.||
T Consensus       107 ~~~~~~~~~~~~~~~~~lv~e-~~~~-~l~~~~~~-----------~~~~--------------------~~~~~i~~qi  153 (371)
T 4exu_A          107 LDVFTPASSLRNFYDFYLVMP-FMQT-DLQKIMGM-----------EFSE--------------------EKIQYLVYQM  153 (371)
T ss_dssp             SEEECSCSSSTTCCCCEEEEE-CCCE-EHHHHTTS-----------CCCH--------------------HHHHHHHHHH
T ss_pred             hhheeccCCcccceeEEEEEc-cccc-cHHHHhhc-----------CCCH--------------------HHHHHHHHHH
Confidence            999983211 01123499999 9996 99888743           3554                    4578899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC------CCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED------GPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      +.||.|||++||+||||||+|||++. ++.+||+|||+++.....      .+.|+|||++.+...++.++|||||||++
T Consensus       154 ~~aL~~LH~~~ivH~Dikp~NIll~~-~~~~kL~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il  232 (371)
T 4exu_A          154 LKGLKYIHSAGVVHRDLKPGNLAVNE-DCELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIM  232 (371)
T ss_dssp             HHHHHHHHHTTCCCSCCCGGGEEECT-TCCEEECSTTCC--------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCcCCCcCHHHeEECC-CCCEEEEecCcccccccCcCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHH
Confidence            99999999999999999999999998 899999999999765432      37899999877767899999999999999


Q ss_pred             HHHHhCCCCChhh---hhhhhhhhccCCChhHHHHH-----HHHHhccCCCCCCCC-cccccCCCHHHHHHHHHhhhcCc
Q 005958          315 AKMVLRELMDPLI---FTKFKSFLTKGIDPSCLREF-----LLQVLNRNSSSGNTG-FQILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       315 yemltG~~PF~~~---~~~~~~~~~~g~~~~~l~~~-----~~~~~~~~~~~~~~~-~~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      |+|++|++||.+.   .....+....|.++......     ............... ....+.+++++++||.+||++||
T Consensus       233 ~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP  312 (371)
T 4exu_A          233 AEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDV  312 (371)
T ss_dssp             HHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCT
T ss_pred             HHHHhCCCCCCCCChHHHHHHHHHHhCCCcHHHHHHhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCCh
Confidence            9999999999742   22333333334433222110     011111111111111 22345778999999999999999


Q ss_pred             CCCCCHHHHHcCCCCCCCCC
Q 005958          386 SKRISCLDALRHPFLCGPRW  405 (667)
Q Consensus       386 ~kRpSa~elL~HPwf~~~~~  405 (667)
                      ++|||++|+|+||||+....
T Consensus       313 ~~Rpt~~ell~hp~f~~~~~  332 (371)
T 4exu_A          313 DKRLTAAQALTHPFFEPFRD  332 (371)
T ss_dssp             TTSCCHHHHHTSGGGTTTCC
T ss_pred             hhcCCHHHHhcCcccccCCC
Confidence            99999999999999998653

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=1.4e-42  Score=375.04  Aligned_cols=270  Identities=20%  Similarity=0.238  Sum_probs=200.9

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      ..++|++++.||+|+||    .||+|.+..     +++.||||++...    ...+.+.+|+.+++.++      ||||+
T Consensus        23 ~~~~y~~~~~lG~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~------hpniv   87 (371)
T 2xrw_A           23 VLKRYQNLKPIGSGAQG----IVCAAYDAI-----LERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVN------HKNII   87 (371)
T ss_dssp             EETTEEEEEEEEECSSE----EEEEEEETT-----TTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCC------CTTBC
T ss_pred             hhhheeEeeeeEecCCE----EEEEEEECC-----CCceEEEEEeccccCChHHHHHHHHHHHHHHhcC------CCCcc
Confidence            35899999999999999    999999987     7999999999752    23355689999999994      99999


Q ss_pred             EEEEEEEecc-cCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          160 QVHGYVSSHT-TSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       160 ~l~~~~~~~~-~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      ++++++.... ......+|+||| |+++ +|.+++..           .+++                    ..++.++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~lv~e-~~~~-~l~~~~~~-----------~~~~--------------------~~~~~i~~  134 (371)
T 2xrw_A           88 GLLNVFTPQKSLEEFQDVYIVME-LMDA-NLCQVIQM-----------ELDH--------------------ERMSYLLY  134 (371)
T ss_dssp             CEEEEECSCCSTTTCCEEEEEEE-CCSE-EHHHHHHS-----------CCCH--------------------HHHHHHHH
T ss_pred             ceEEeeccccccccccceEEEEE-cCCC-CHHHHHhh-----------ccCH--------------------HHHHHHHH
Confidence            9999997331 123348999999 9987 89998863           3454                    45778999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHH
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      ||+.||.|||++||+||||||+|||++. ++.+||+|||+|+.....        .+.|+|||++.+ ..|+.++|||||
T Consensus       135 qi~~al~~lH~~~ivH~Dlkp~NIl~~~-~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Diwsl  212 (371)
T 2xrw_A          135 QMLCGIKHLHSAGIIHRDLKPSNIVVKS-DCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILG-MGYKENVDIWSV  212 (371)
T ss_dssp             HHHHHHHHHHHTTCCCSCCCGGGEEECT-TSCEEECCCCC----------------CTTCCHHHHTT-CCCCTTHHHHHH
T ss_pred             HHHHHHHHHHHCCeecccCCHHHEEEcC-CCCEEEEEeecccccccccccCCceecCCccCHHHhcC-CCCCchHhHHHH
Confidence            9999999999999999999999999998 899999999999865432        367999996654 569999999999


Q ss_pred             HHHHHHHHhCCCCChhh---hhhhhhhhccCCChhHHHH----HHHHHhccCCCCCCCCcc-------------cccCCC
Q 005958          311 GFMMAKMVLRELMDPLI---FTKFKSFLTKGIDPSCLRE----FLLQVLNRNSSSGNTGFQ-------------ILDRNW  370 (667)
Q Consensus       311 GviLyemltG~~PF~~~---~~~~~~~~~~g~~~~~l~~----~~~~~~~~~~~~~~~~~~-------------~~~~~s  370 (667)
                      ||++|+|++|++||.+.   .....+....|.+......    .+.......+......+.             .....+
T Consensus       213 G~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (371)
T 2xrw_A          213 GCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKA  292 (371)
T ss_dssp             HHHHHHHHHSSCSSCCSSHHHHHHHHHC-CCCCCHHHHTTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHhhCccccccchhhhcccccCccccccccccc
Confidence            99999999999999742   2233333344444322211    111111111111111100             001125


Q ss_pred             HHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCC
Q 005958          371 GAGWNLLSLLLATKPSKRISCLDALRHPFLCGP  403 (667)
Q Consensus       371 ~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~  403 (667)
                      +++++||.+||+.||++|||++|+|+||||+..
T Consensus       293 ~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~~  325 (371)
T 2xrw_A          293 SQARDLLSKMLVIDASKRISVDEALQHPYINVW  325 (371)
T ss_dssp             HHHHHHHHHHSCSSGGGSCCHHHHHHSHHHHTT
T ss_pred             HHHHHHHHHHCcCChhhCCCHHHHhCCcchhhh
Confidence            789999999999999999999999999999864

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=8.6e-43  Score=367.78  Aligned_cols=259  Identities=16%  Similarity=0.175  Sum_probs=201.1

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      ...++|++.+.||+|+||    +||+|.+..     +++.||||++....   ..+...+|++++++++      ||||+
T Consensus         6 ~~~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~------h~~iv   70 (319)
T 4euu_A            6 TSNHLWLLSDILGQGATA----NVFRGRHKK-----TGDLFAIKVFNNISFLRPVDVQMREFEVLKKLN------HKNIV   70 (319)
T ss_dssp             CSSEEEEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCC------CTTBC
T ss_pred             CCCCCEEEEEEecCCCCe----EEEEEEECC-----CCcEEEEEEeccccccchHHHHHHHHHHHHhcC------CCCcc
Confidence            345789999999999999    999999998     79999999997532   2355689999999995      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++...   .....|+||| |+++|+|.+++.....      ...+++                    ..++.++.|
T Consensus        71 ~~~~~~~~~---~~~~~~lv~e-~~~~~~L~~~l~~~~~------~~~~~~--------------------~~~~~i~~q  120 (319)
T 4euu_A           71 KLFAIEEET---TTRHKVLIME-FCPCGSLYTVLEEPSN------AYGLPE--------------------SEFLIVLRD  120 (319)
T ss_dssp             CEEEEEECT---TTCCEEEEEE-CCTTCBHHHHHHSGGG------TTCCCH--------------------HHHHHHHHH
T ss_pred             eEEEEeecC---CCceEEEEEe-CCCCCCHHHHHHHhcc------ccCCCH--------------------HHHHHHHHH
Confidence            999999843   4558999999 9999999999986431      012444                    567889999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEE----cCCCCeEEEeeecccccccCC--------CCCCCCcccccC-------CCC
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHI----SPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMD-------RRQ  300 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl----~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~-------~~~  300 (667)
                      |+.||.|||++||+||||||+|||+    +. ++.+||+|||+|+.....        .+.|+|||++..       ...
T Consensus       121 i~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~-~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~  199 (319)
T 4euu_A          121 VVGGMNHLRENGIVHRNIKPGNIMRVIGEDG-QSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKK  199 (319)
T ss_dssp             HHHHHHHHHHTTEECSCCSGGGEEEEECTTS-CEEEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHTSCCCCCCC
T ss_pred             HHHHHHHHHHCCEecCCCCHHHEEEeccCCC-CceEEEccCCCceecCCCCceeecccCCCccCHHHhhhccccccccCC
Confidence            9999999999999999999999998    55 678999999999876443        368999996642       467


Q ss_pred             CCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCC------------------CCC
Q 005958          301 MMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSG------------------NTG  362 (667)
Q Consensus       301 ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~------------------~~~  362 (667)
                      |+.++|||||||++|||++|++||....           ......+.+..+....+...                  ...
T Consensus       200 ~~~~~DiwslG~il~el~~g~~pf~~~~-----------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  268 (319)
T 4euu_A          200 YGATVDLWSIGVTFYHAATGSLPFRPFE-----------GPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVS  268 (319)
T ss_dssp             BCTTHHHHHHHHHHHHHHHSSCSEECTT-----------CGGGCHHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCCTT
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCCCCC-----------ccchhHHHHHHHhcCCCcccchhhhcccCCccccCccCCcc
Confidence            8999999999999999999999995211           11111222222222222110                  001


Q ss_pred             cccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCC
Q 005958          363 FQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHP  398 (667)
Q Consensus       363 ~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HP  398 (667)
                      .......++.+.+||.+||+.||++|||++|+|+||
T Consensus       269 ~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~  304 (319)
T 4euu_A          269 CSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAET  304 (319)
T ss_dssp             CSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHH
T ss_pred             cccchhHHHHhHHHHHHhccCChhhhccHHHhhhcc
Confidence            112234456899999999999999999999999986

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=4.8e-43  Score=362.08  Aligned_cols=251  Identities=16%  Similarity=0.233  Sum_probs=204.4

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--------hHHHHHHHHHHHHHHhhccCCCCC
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--------AQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--------~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      .++|++.+.||+|+||    .||+|++..     +++.||+|++....        ..+.+.+|+.++++++      ||
T Consensus         4 ~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~------h~   68 (283)
T 3bhy_A            4 EDHYEMGEELGSGQFA----IVRKCRQKG-----TGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIR------HP   68 (283)
T ss_dssp             HHHEEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCC------CT
T ss_pred             hhhhhhHHhhcccCce----EEEEEEEcC-----CCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCC------CC
Confidence            3679999999999999    999999997     79999999987532        2466789999999995      99


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++.     ..+..++||| |+++++|.+++....         .+++                    ..++.+
T Consensus        69 ~i~~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~~~  113 (283)
T 3bhy_A           69 NIITLHDIFE-----NKTDVVLILE-LVSGGELFDFLAEKE---------SLTE--------------------DEATQF  113 (283)
T ss_dssp             TBCCEEEEEE-----CSSEEEEEEE-CCCSCBHHHHHHHHS---------SCCH--------------------HHHHHH
T ss_pred             Ceeehhheec-----CCCeEEEEEe-ecCCCcHHHHHHhcC---------CCCH--------------------HHHHHH
Confidence            9999999998     7789999999 999899999998653         4554                    457889


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCC----eEEEeeecccccccCC--------CCCCCCcccccCCCCCCch
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDR----HIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~----~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~k  304 (667)
                      +.||+.||.|||++||+||||||+||+++. ++    .+||+|||++......        .+.|+|||++ ....++.+
T Consensus       114 ~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~-~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~  191 (283)
T 3bhy_A          114 LKQILDGVHYLHSKRIAHFDLKPENIMLLD-KNVPNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIV-NYEPLGLE  191 (283)
T ss_dssp             HHHHHHHHHHHHHTTEECSCCSGGGEEESC-SSSSSCCEEECCCTTCEECC--------CCCGGGCCHHHH-TTCCCCTH
T ss_pred             HHHHHHHHHHHHhCCccCCCCChHHEEEec-CCCCCCceEEEecccceeccCCCcccccCCCcCccCccee-cCCCCCcc
Confidence            999999999999999999999999999987 44    8999999999865432        3679999955 45568999


Q ss_pred             hhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          305 FDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       305 sDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      +|||||||++|+|++|..||..            .........+   ......   .........++++.+||.+||..|
T Consensus       192 ~Di~slG~il~~l~~g~~p~~~------------~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~li~~~l~~d  253 (283)
T 3bhy_A          192 ADMWSIGVITYILLSGASPFLG------------ETKQETLTNI---SAVNYD---FDEEYFSNTSELAKDFIRRLLVKD  253 (283)
T ss_dssp             HHHHHHHHHHHHHHHSSCTTCC------------SSHHHHHHHH---HTTCCC---CCHHHHTTCCHHHHHHHHTTSCSS
T ss_pred             hhhhhHHHHHHHHHHCCCCCCC------------cchHHHHHHh---HhcccC---CcchhcccCCHHHHHHHHHHccCC
Confidence            9999999999999999999852            2222211111   111100   111233567889999999999999


Q ss_pred             cCCCCCHHHHHcCCCCCCCCC
Q 005958          385 PSKRISCLDALRHPFLCGPRW  405 (667)
Q Consensus       385 P~kRpSa~elL~HPwf~~~~~  405 (667)
                      |++|||+.|+|+||||+..++
T Consensus       254 p~~Rps~~~~l~h~~~~~~~~  274 (283)
T 3bhy_A          254 PKRRMTIAQSLEHSWIKAIRR  274 (283)
T ss_dssp             GGGSCCHHHHHHCHHHHHHHH
T ss_pred             HhHCcCHHHHHhCHHHHHHHH
Confidence            999999999999999987653

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=1.2e-42  Score=376.87  Aligned_cols=278  Identities=17%  Similarity=0.206  Sum_probs=207.1

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ...++|++.+.||+|+||    +||+|++..     +++.||||+++... ......+|+.+++.+.+.....|++|+++
T Consensus        51 ~~~~~y~~~~~lG~G~~g----~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~  121 (382)
T 2vx3_A           51 KWMDRYEIDSLIGKGSFG----QVVKAYDRV-----EQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHL  121 (382)
T ss_dssp             EETTTEEEEEEEEEETTE----EEEEEEETT-----TTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHCSSGGGGGBCCE
T ss_pred             EeeeeEEEEEEEeecCCE----EEEEEEEcC-----CCcEEEEEEEeccHHHHHHHHHHHHHHHHHHhcccccceeEEEe
Confidence            346899999999999999    999999987     78999999997543 34567889999999985555556679999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     ..+.+|+||| |+++ +|.+++.....       ..+++                    ..++.++.||+
T Consensus       122 ~~~~~-----~~~~~~lv~e-~~~~-~L~~~l~~~~~-------~~~~~--------------------~~~~~i~~qi~  167 (382)
T 2vx3_A          122 KRHFM-----FRNHLCLVFE-MLSY-NLYDLLRNTNF-------RGVSL--------------------NLTRKFAQQMC  167 (382)
T ss_dssp             EEEEE-----ETTEEEEEEE-CCCC-BHHHHHHHTTT-------SCCCH--------------------HHHHHHHHHHH
T ss_pred             eeeec-----cCCceEEEEe-cCCC-CHHHHHhhcCc-------CCCCH--------------------HHHHHHHHHHH
Confidence            99998     6789999999 9986 99999987531       12443                    56788999999


Q ss_pred             HHHHHHH--HCCCcccCCCCCcEEEcC-CCCeEEEeeecccccccCC------CCCCCCcccccCCCCCCchhhHHHHHH
Q 005958          242 IGVNYLH--SHGLAHTELRLENVHISP-VDRHIKVGILGNAADFYED------GPNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       242 ~aL~yLH--s~gIvHrDLKPeNILl~~-~~~~vKL~DFGlA~~~~~~------~~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      .||.|||  +.||+||||||+|||++. .++.+||+|||+|+.....      .+.|+|||++.+ ..|+.++|||||||
T Consensus       168 ~al~~lH~~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~-~~~~~~~DiwSlG~  246 (382)
T 2vx3_A          168 TALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQRIYQYIQSRFYRSPEVLLG-MPYDLAIDMWSLGC  246 (382)
T ss_dssp             HHHHHHTSTTTCEECCCCSGGGEEESSTTSCCEEECCCTTCEETTCCCCSSCSCGGGCCHHHHTT-CCCCTHHHHHHHHH
T ss_pred             HHHHHhccCCCCEEcCCCCcccEEEecCCCCcEEEEeccCceecccccccccCCccccChHHHcC-CCCCcHHHHHHHHH
Confidence            9999999  479999999999999953 2678999999999876543      367999996654 46999999999999


Q ss_pred             HHHHHHhCCCCChhh---hhhhhhhhccCCChhHHHHHH---HHHhccCCCC---------CCCCccc------------
Q 005958          313 MMAKMVLRELMDPLI---FTKFKSFLTKGIDPSCLREFL---LQVLNRNSSS---------GNTGFQI------------  365 (667)
Q Consensus       313 iLyemltG~~PF~~~---~~~~~~~~~~g~~~~~l~~~~---~~~~~~~~~~---------~~~~~~~------------  365 (667)
                      ++|||++|++||...   .....+....+.++..+....   ...+...+..         ....+..            
T Consensus       247 il~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  326 (382)
T 2vx3_A          247 ILVEMHTGEPLFSGANEVDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPDGTWNLKKTKDGKREYKPPGTRKLHNILGV  326 (382)
T ss_dssp             HHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTTCTTHHHHEEECTTSCEEECCCCTTCCCSCCTTCSCHHHHHTT
T ss_pred             HHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhHHHHHHHHhccccccccccccccccccCCcchhhHHHHhhc
Confidence            999999999999732   223333333444443322110   0011110000         0000000            


Q ss_pred             ---------------ccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          366 ---------------LDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       366 ---------------~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                                     ....++++++||.+||++||++|||++|+|+||||++..
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~Rpta~e~L~hp~f~~~~  380 (382)
T 2vx3_A          327 ETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQHSFFKKTA  380 (382)
T ss_dssp             TTTSGGGTTTTCTTCCHHHHHHHHHHHHHHTCSCTTTSCCHHHHTTSGGGCC--
T ss_pred             cccCCCccccccccccchhhHHHHHHHHHhcCCChhhCCCHHHHhcCcccccCC
Confidence                           000124789999999999999999999999999998754

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=4.7e-42  Score=357.99  Aligned_cols=251  Identities=19%  Similarity=0.270  Sum_probs=203.2

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      .++|++.+.||+|+||    .||+|.+..     +++.||+|++....  ..+.+.+|+++++.++      ||||++++
T Consensus        18 ~~~y~i~~~lg~G~~g----~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~~~   82 (302)
T 2j7t_A           18 NEVWEIVGELGDGAFG----KVYKAKNKE-----TGALAAAKVIETKSEEELEDYIVEIEILATCD------HPYIVKLL   82 (302)
T ss_dssp             GGTEEEEEEEECSTTC----CEEEEEETT-----TCCEEEEEEEC----CCHHHHHHHHHHHHHCC------CTTBCCEE
T ss_pred             ccceeecceeccCCCe----EEEEEEEcC-----CCcEEEEEEecCCCHHHHHHHHHHHHHHhcCC------CCCEeeee
Confidence            4789999999999999    999999997     78999999987532  3356789999999994      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     ..+..++||| |+++|+|.+++....        ..+++                    ..++.++.||+.
T Consensus        83 ~~~~-----~~~~~~lv~e-~~~~~~l~~~~~~~~--------~~~~~--------------------~~~~~~~~~i~~  128 (302)
T 2j7t_A           83 GAYY-----HDGKLWIMIE-FCPGGAVDAIMLELD--------RGLTE--------------------PQIQVVCRQMLE  128 (302)
T ss_dssp             EEEE-----CC-CEEEEEE-CCTTEEHHHHHHHHT--------SCCCH--------------------HHHHHHHHHHHH
T ss_pred             eeee-----eCCeEEEEEE-eCCCCcHHHHHHhhc--------cCCCH--------------------HHHHHHHHHHHH
Confidence            9998     7789999999 999999999987632        13454                    457889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccc---------cCCCCCCCCccccc----CCCCCCchhhHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADF---------YEDGPNNSSPDSNM----DRRQMMIAFDMRC  309 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~---------~~~~~~Y~APE~l~----~~~~ys~ksDIWS  309 (667)
                      ||.|||++||+||||||+|||++. ++.+||+|||++...         ..+.+.|+|||++.    ....++.++||||
T Consensus       129 ~l~~lH~~~i~H~dlkp~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~s  207 (302)
T 2j7t_A          129 ALNFLHSKRIIHRDLKAGNVLMTL-EGDIRLADFGVSAKNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWS  207 (302)
T ss_dssp             HHHHHHHTTCCCCCCSGGGEEECT-TSCEEECCCHHHHHHHHHHHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHH
T ss_pred             HHHHHhcCCcccCCCCHHHEEECC-CCCEEEEECCCCccccccccccccccCChhhcCCeeeccccCCCCCCchhhhHHH
Confidence            999999999999999999999998 899999999987532         12347899999764    4567899999999


Q ss_pred             HHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          310 VGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       310 LGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      |||++|+|++|.+||...            .....   .........+    .......++.++.+||.+||+.||++||
T Consensus       208 lG~il~~l~~g~~p~~~~------------~~~~~---~~~~~~~~~~----~~~~~~~~~~~l~~li~~~l~~dp~~Rp  268 (302)
T 2j7t_A          208 LGITLIEMAQIEPPHHEL------------NPMRV---LLKIAKSDPP----TLLTPSKWSVEFRDFLKIALDKNPETRP  268 (302)
T ss_dssp             HHHHHHHHHHSSCTTTTS------------CHHHH---HHHHHHSCCC----CCSSGGGSCHHHHHHHHHHSCSCTTTSC
T ss_pred             HHHHHHHHhcCCCCCccC------------CHHHH---HHHHhccCCc----ccCCccccCHHHHHHHHHHcccChhhCC
Confidence            999999999999998532            11111   1111111111    1223356788999999999999999999


Q ss_pred             CHHHHHcCCCCCCCC
Q 005958          390 SCLDALRHPFLCGPR  404 (667)
Q Consensus       390 Sa~elL~HPwf~~~~  404 (667)
                      |+.|+++||||++..
T Consensus       269 s~~~ll~h~~~~~~~  283 (302)
T 2j7t_A          269 SAAQLLEHPFVSSIT  283 (302)
T ss_dssp             CHHHHTTSTTTTTCC
T ss_pred             CHHHHhcChHHhhhc
Confidence            999999999999876

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=1.3e-42  Score=366.93  Aligned_cols=252  Identities=21%  Similarity=0.261  Sum_probs=200.0

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh----------HHHHHHHHHHHHHHhhccCCC
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA----------QRRGRRAIEVLKKLVRRRLMY  154 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~----------~~~~~rEi~iL~~L~~~~~~~  154 (667)
                      .++|++.+.||+|+||    .||+|++..     +++.||||++.....          ...+.+|+++|+++.      
T Consensus         9 ~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~------   73 (322)
T 2ycf_A            9 RDEYIMSKTLGSGACG----EVKLAFERK-----TCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLN------   73 (322)
T ss_dssp             HHHEEEEEEEEECSSE----EEEEEEETT-----TTEEEEEEEECC---------------CHHHHHHHHHHCC------
T ss_pred             hhceeEeeEEecCCCE----EEEEEEEcC-----CCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCC------
Confidence            4789999999999999    999999998     799999999875321          123578999999994      


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      ||||+++++++.     ... .|+||| |+++|+|.+++....         .+++                    ..++
T Consensus        74 h~~i~~~~~~~~-----~~~-~~lv~e-~~~~~~L~~~~~~~~---------~~~~--------------------~~~~  117 (322)
T 2ycf_A           74 HPCIIKIKNFFD-----AED-YYIVLE-LMEGGELFDKVVGNK---------RLKE--------------------ATCK  117 (322)
T ss_dssp             CTTBCCEEEEEE-----SSS-EEEEEE-CCTTEETHHHHSTTC---------CCCH--------------------HHHH
T ss_pred             CCCCceEeeEEc-----CCc-eEEEEe-cCCCCcHHHHHhccC---------CCCH--------------------HHHH
Confidence            999999999987     333 899999 999999999997654         4554                    4577


Q ss_pred             HHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCC--CCeEEEeeecccccccCC--------CCCCCCccccc--CCCCCC
Q 005958          235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPV--DRHIKVGILGNAADFYED--------GPNNSSPDSNM--DRRQMM  302 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~--~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~--~~~~ys  302 (667)
                      .++.||+.||.|||++||+||||||+|||++..  +..+||+|||++......        .+.|+|||++.  ....|+
T Consensus       118 ~~~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  197 (322)
T 2ycf_A          118 LYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYN  197 (322)
T ss_dssp             HHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSSSCCEEECCCTTCEECCCCHHHHHHHSCCTTCCHHHHHHTTTTTCT
T ss_pred             HHHHHHHHHHHHHHHCCeeccCCCHHHEEEecCCCCCeEEEccCccceecccccccccccCCcCccCchhhccCCCCCCC
Confidence            899999999999999999999999999999872  235999999999876543        47899999763  456789


Q ss_pred             chhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhh
Q 005958          303 IAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLA  382 (667)
Q Consensus       303 ~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~  382 (667)
                      .++|||||||++|+|++|.+||....           ....+...+....   ..   ........+++++.+||.+||+
T Consensus       198 ~~~Di~slG~il~~l~~g~~pf~~~~-----------~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~li~~~l~  260 (322)
T 2ycf_A          198 RAVDCWSLGVILFICLSGYPPFSEHR-----------TQVSLKDQITSGK---YN---FIPEVWAEVSEKALDLVKKLLV  260 (322)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSSCSTT-----------CSSCHHHHHHHTC---CC---CCHHHHTTSCHHHHHHHHHHSC
T ss_pred             chhhHHHHHHHHHHHHhCCCCCcccc-----------hHHHHHHHHHhCc---cc---cCchhhhhcCHHHHHHHHHHcc
Confidence            99999999999999999999996321           1111222221110   00   0011234678899999999999


Q ss_pred             cCcCCCCCHHHHHcCCCCCCCC
Q 005958          383 TKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       383 ~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      .||++|||++++|+||||++..
T Consensus       261 ~dP~~Rps~~~~l~h~~~~~~~  282 (322)
T 2ycf_A          261 VDPKARFTTEEALRHPWLQDED  282 (322)
T ss_dssp             SSTTTSCCHHHHHTSGGGCCHH
T ss_pred             cCHhhCCCHHHHhhCcCcCCHH
Confidence            9999999999999999998743

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=1.8e-42  Score=371.53  Aligned_cols=274  Identities=18%  Similarity=0.225  Sum_probs=206.4

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-------------hHHHHHHHHHHHHHHhhc
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-------------AQRRGRRAIEVLKKLVRR  150 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-------------~~~~~~rEi~iL~~L~~~  150 (667)
                      ..++|++.+.||+|+||    .||+|.+.      .++.||||++....             ..+.+.+|+.++++++  
T Consensus        20 ~~~~y~~~~~lg~G~~g----~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~--   87 (362)
T 3pg1_A           20 MQSPYTVQRFISSGSYG----AVCAGVDS------EGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFH--   87 (362)
T ss_dssp             TTCSCEEEEEEEEETTE----EEEEEECT------TSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCC--
T ss_pred             hccceEEeEEeccCCCE----EEEEEECC------CCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCC--
Confidence            35899999999999999    99999986      48999999986421             1256789999999995  


Q ss_pred             cCCCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccH
Q 005958          151 RLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQL  230 (667)
Q Consensus       151 ~~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~  230 (667)
                          ||||+++++++..........+|+||| |+++ +|.+++....        ..+++                    
T Consensus        88 ----h~~iv~~~~~~~~~~~~~~~~~~lv~e-~~~~-~l~~~~~~~~--------~~~~~--------------------  133 (362)
T 3pg1_A           88 ----HPNILGLRDIFVHFEEPAMHKLYLVTE-LMRT-DLAQVIHDQR--------IVISP--------------------  133 (362)
T ss_dssp             ----CTTBCCCSEEEEECCTTTCCEEEEEEE-CCSE-EHHHHHHCTT--------SCCCH--------------------
T ss_pred             ----CcCccceeeeEEeccCCCcceEEEEEc-cCCC-CHHHHHHhcc--------cCCCH--------------------
Confidence                999999999997543335668999999 9996 9999988543        13444                    


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCC
Q 005958          231 RLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMM  302 (667)
Q Consensus       231 ~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys  302 (667)
                      ..++.++.||+.||.|||++||+||||||+|||++. ++.+||+|||++......        .+.|+|||++.+...++
T Consensus       134 ~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~  212 (362)
T 3pg1_A          134 QHIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLAD-NNDITICDFNLAREDTADANKTHYVTHRWYRAPELVMQFKGFT  212 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECT-TCCEEECCTTC---------------CGGGCCHHHHTTCTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHCcCEecCCChHHEEEcC-CCCEEEEecCcccccccccccceecccceecCcHHhcCCCCCC
Confidence            457889999999999999999999999999999998 899999999999754332        25699999777767799


Q ss_pred             chhhHHHHHHHHHHHHhCCCCChhh---hhhhhhhhccCCChhHHHHH-----HHHHhccCC-CCC-CCCcccccCCCHH
Q 005958          303 IAFDMRCVGFMMAKMVLRELMDPLI---FTKFKSFLTKGIDPSCLREF-----LLQVLNRNS-SSG-NTGFQILDRNWGA  372 (667)
Q Consensus       303 ~ksDIWSLGviLyemltG~~PF~~~---~~~~~~~~~~g~~~~~l~~~-----~~~~~~~~~-~~~-~~~~~~~~~~s~e  372 (667)
                      .++|||||||++|+|++|++||...   .....+....+.+.......     ......... ... .......+..+++
T Consensus       213 ~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (362)
T 3pg1_A          213 KLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPV  292 (362)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHH
T ss_pred             cHhHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHH
Confidence            9999999999999999999999732   22222223333332211100     001111100 000 0111234567899


Q ss_pred             HHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          373 GWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       373 ~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      +.+||.+||++||++|||+.|+|+||||+...
T Consensus       293 ~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~  324 (362)
T 3pg1_A          293 ALDLIAKMLEFNPQRRISTEQALRHPYFESLF  324 (362)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHTSGGGTTTC
T ss_pred             HHHHHHHHhcCChhhCCCHHHHHcCchhhhcc
Confidence            99999999999999999999999999999875

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=5.6e-42  Score=356.73  Aligned_cols=249  Identities=18%  Similarity=0.241  Sum_probs=206.1

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-----hhHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-----QAQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-----~~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      ...++|++.+.||+|+||    .||+|.+..     +++.||+|++...     ...+.+.+|+.+++.+      .|||
T Consensus        12 ~~~~~y~~~~~lg~G~~g----~Vy~~~~~~-----~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~   76 (294)
T 2rku_A           12 RSRRRYVRGRFLGKGGFA----KCFEISDAD-----TKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSL------AHQH   76 (294)
T ss_dssp             TTTEEEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTC------CCTT
T ss_pred             CcccceEEEEEEeecCCE----EEEEEEECC-----CCceEEEEEechhhccCHHHHHHHHHHHHHHHhC------CCCC
Confidence            345789999999999999    999999998     7899999998753     2345568899999999      4999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     +.+..++||| |+++++|.+++...+         .+++                    ..++.++
T Consensus        77 iv~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~~---------~~~~--------------------~~~~~i~  121 (294)
T 2rku_A           77 VVGFHGFFE-----DNDFVFVVLE-LCRRRSLLELHKRRK---------ALTE--------------------PEARYYL  121 (294)
T ss_dssp             BCCEEEEEE-----CSSEEEEEEE-CCTTCBHHHHHHHHC---------SCCH--------------------HHHHHHH
T ss_pred             Eeeeeeeec-----cCCEEEEEEe-cCCCCCHHHHHHhcC---------CCCH--------------------HHHHHHH
Confidence            999999998     7889999999 999999999998754         4554                    4577899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHH
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      .||+.||.|||++||+||||||+|||++. ++.+||+|||++.....         +.+.|+|||.+ ....++.++|||
T Consensus       122 ~qi~~~l~~lH~~~i~H~dl~p~Nil~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~  199 (294)
T 2rku_A          122 RQIVLGCQYLHRNRVIHRDLKLGNLFLNE-DLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVL-SKKGHSFEVDVW  199 (294)
T ss_dssp             HHHHHHHHHHHHTTEECCCCCGGGEEECT-TCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHH-TTSCBCTHHHHH
T ss_pred             HHHHHHHHHHHHCCccccCCChHhEEEcC-CCCEEEEeccCceecccCccccccccCCCCcCCcchh-ccCCCCchhhHH
Confidence            99999999999999999999999999998 89999999999976542         23679999955 455689999999


Q ss_pred             HHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCC
Q 005958          309 CVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  388 (667)
Q Consensus       309 SLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kR  388 (667)
                      ||||++|+|++|+.||...            .....   .......       .......+++++.+||.+||+.||++|
T Consensus       200 slG~~l~~l~~g~~p~~~~------------~~~~~---~~~~~~~-------~~~~~~~~~~~~~~li~~~l~~~p~~R  257 (294)
T 2rku_A          200 SIGCIMYTLLVGKPPFETS------------CLKET---YLRIKKN-------EYSIPKHINPVAASLIQKMLQTDPTAR  257 (294)
T ss_dssp             HHHHHHHHHHHSSCTTCCS------------SHHHH---HHHHHTT-------CCCCCTTSCHHHHHHHHHHTCSSGGGS
T ss_pred             HHHHHHHHHHhCCCCCCCC------------CHHHH---HHHHhhc-------cCCCccccCHHHHHHHHHHcccChhhC
Confidence            9999999999999998521            11111   1111111       122345678899999999999999999


Q ss_pred             CCHHHHHcCCCCCCCCC
Q 005958          389 ISCLDALRHPFLCGPRW  405 (667)
Q Consensus       389 pSa~elL~HPwf~~~~~  405 (667)
                      ||++|+++||||.....
T Consensus       258 ps~~~ll~~~~~~~~~~  274 (294)
T 2rku_A          258 PTINELLNDEFFTSGYI  274 (294)
T ss_dssp             CCGGGGGGSHHHHTSCC
T ss_pred             cCHHHHhhChheecCCc
Confidence            99999999999987654

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=5.4e-42  Score=364.95  Aligned_cols=248  Identities=18%  Similarity=0.224  Sum_probs=205.8

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-----hhHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-----QAQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-----~~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      ...++|++.+.||+|+||    .||+|.+..     +++.||+|++...     ...+.+.+|+.+++.+      .|||
T Consensus        38 ~~~~~y~~~~~lg~G~~g----~Vy~~~~~~-----~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~  102 (335)
T 2owb_A           38 RSRRRYVRGRFLGKGGFA----KCFEISDAD-----TKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSL------AHQH  102 (335)
T ss_dssp             TTTEEEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTC------CCTT
T ss_pred             ccCCceEEEEEEeeCCCe----EEEEEEECC-----CCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhC------CCCC
Confidence            345789999999999999    999999998     7899999998753     2345678899999999      4999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     +.+.+|+||| |+++++|.+++...+         .+++                    ..++.++
T Consensus       103 iv~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~~---------~l~~--------------------~~~~~i~  147 (335)
T 2owb_A          103 VVGFHGFFE-----DNDFVFVVLE-LCRRRSLLELHKRRK---------ALTE--------------------PEARYYL  147 (335)
T ss_dssp             BCCEEEEEE-----CSSEEEEEEC-CCTTCBHHHHHHHHC---------SCCH--------------------HHHHHHH
T ss_pred             CCeEEEEEe-----cCCeEEEEEe-cCCCCCHHHHHhccC---------CCCH--------------------HHHHHHH
Confidence            999999999     7889999999 999999999998754         4554                    4578899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHH
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      .||+.||.|||++||+||||||+|||++. ++.+||+|||++.....         +.+.|+|||++. ...++.++|||
T Consensus       148 ~qi~~aL~~LH~~~ivH~dlkp~NIl~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~Di~  225 (335)
T 2owb_A          148 RQIVLGCQYLHRNRVIHRDLKLGNLFLNE-DLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLS-KKGHSFEVDVW  225 (335)
T ss_dssp             HHHHHHHHHHHHTTEECSCCCGGGEEECT-TCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHH-TSCBCTHHHHH
T ss_pred             HHHHHHHHHHHHCCCEecCCCchhEEEcC-CCCEEEeeccCceecccCcccccccCCCccccCHHHhc-cCCCCchhhHH
Confidence            99999999999999999999999999998 89999999999986542         236799999654 45689999999


Q ss_pred             HHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCC
Q 005958          309 CVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  388 (667)
Q Consensus       309 SLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kR  388 (667)
                      ||||++|+|++|+.||...            ........   +...       .......+++++.+||.+||+.||++|
T Consensus       226 slG~il~~l~~g~~pf~~~------------~~~~~~~~---~~~~-------~~~~~~~~~~~~~~li~~~l~~dp~~R  283 (335)
T 2owb_A          226 SIGCIMYTLLVGKPPFETS------------CLKETYLR---IKKN-------EYSIPKHINPVAASLIQKMLQTDPTAR  283 (335)
T ss_dssp             HHHHHHHHHHHSSCTTCCS------------SHHHHHHH---HHHT-------CCCCCTTSCHHHHHHHHHHTCSSGGGS
T ss_pred             HHHHHHHHHHHCcCCCCCC------------CHHHHHHH---HhcC-------CCCCCccCCHHHHHHHHHHccCChhHC
Confidence            9999999999999998521            11111111   1111       112334678899999999999999999


Q ss_pred             CCHHHHHcCCCCCCCC
Q 005958          389 ISCLDALRHPFLCGPR  404 (667)
Q Consensus       389 pSa~elL~HPwf~~~~  404 (667)
                      ||++|+|+||||....
T Consensus       284 ps~~ell~~~~~~~~~  299 (335)
T 2owb_A          284 PTINELLNDEFFTSGY  299 (335)
T ss_dssp             CCGGGGGGSHHHHTSC
T ss_pred             cCHHHHhcCccccCCC
Confidence            9999999999998765

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=3e-42  Score=369.98  Aligned_cols=248  Identities=21%  Similarity=0.217  Sum_probs=201.9

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-----hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      +.|++.+.||+|+||    .||+|++..     +++.||||++...     ...+.+.+|++++++++      ||||++
T Consensus        54 ~~y~~~~~lG~G~~g----~Vy~a~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~------hpniv~  118 (348)
T 1u5q_A           54 KLFSDLREIGHGSFG----AVYFARDVR-----NSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLR------HPNTIQ  118 (348)
T ss_dssp             HHEEEEEEEEECSSE----EEEEEEETT-----TTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCC------CTTBCC
T ss_pred             hheeeeeEEccCCCE----EEEEEEEcc-----CCeEEEEEEEccccccchHHHHHHHHHHHHHHhCC------CCCEee
Confidence            459999999999999    999999987     7999999999642     12245789999999995      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     ..+..++||| |+.+ +|.+++....        ..+++                    ..++.++.||
T Consensus       119 ~~~~~~-----~~~~~~lv~e-~~~g-~l~~~l~~~~--------~~l~~--------------------~~~~~i~~qi  163 (348)
T 1u5q_A          119 YRGCYL-----REHTAWLVME-YCLG-SASDLLEVHK--------KPLQE--------------------VEIAAVTHGA  163 (348)
T ss_dssp             EEEEEE-----ETTEEEEEEE-CCSE-EHHHHHHHHT--------SCCCH--------------------HHHHHHHHHH
T ss_pred             EEEEEE-----ECCeEEEEEe-cCCC-CHHHHHHHhc--------CCCCH--------------------HHHHHHHHHH
Confidence            999998     6789999999 9985 9999886532        14554                    4578899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----CCCCCCccccc--CCCCCCchhhHHHHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----GPNNSSPDSNM--DRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----~~~Y~APE~l~--~~~~ys~ksDIWSLGvi  313 (667)
                      +.||.|||++||+||||||+|||++. ++.+||+|||++......     .+.|+|||++.  ....|+.++|||||||+
T Consensus       164 ~~aL~~LH~~~ivH~Dlkp~NIll~~-~~~~kL~DfG~a~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~i  242 (348)
T 1u5q_A          164 LQGLAYLHSHNMIHRDVKAGNILLSE-PGLVKLGDFGSASIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGIT  242 (348)
T ss_dssp             HHHHHHHHHTTCBCCCCSGGGEEEET-TTEEEECCCTTCBSSSSBCCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHH
T ss_pred             HHHHHHHHhCCeeeCCCCHHHEEECC-CCCEEEeeccCceecCCCCcccCCcceeCHhhhccccCCCCCcHHHHHHHHHH
Confidence            99999999999999999999999998 899999999999866532     37899999765  35678999999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      +|||++|++||.....           ...+..    ......+     ......+++++++||.+||+.||++|||+++
T Consensus       243 l~ell~g~~p~~~~~~-----------~~~~~~----~~~~~~~-----~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~  302 (348)
T 1u5q_A          243 CIELAERKPPLFNMNA-----------MSALYH----IAQNESP-----ALQSGHWSEYFRNFVDSCLQKIPQDRPTSEV  302 (348)
T ss_dssp             HHHHHHSSCTTTTSCH-----------HHHHHH----HHHSCCC-----CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHHHHhCCCCCCCCCh-----------HHHHHH----HHhcCCC-----CCCCCCCCHHHHHHHHHHcccChhhCcCHHH
Confidence            9999999999853211           111111    1111111     1122457889999999999999999999999


Q ss_pred             HHcCCCCCCCC
Q 005958          394 ALRHPFLCGPR  404 (667)
Q Consensus       394 lL~HPwf~~~~  404 (667)
                      +|+||||....
T Consensus       303 ll~h~~~~~~~  313 (348)
T 1u5q_A          303 LLKHRFVLRER  313 (348)
T ss_dssp             HTTCHHHHSCC
T ss_pred             HhhChhhhccC
Confidence            99999997754

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.5e-42  Score=361.29  Aligned_cols=252  Identities=18%  Similarity=0.241  Sum_probs=201.6

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ...++|++.+.||+|+||    .||+|.+..     +++.||||++......+.+.+|+.+++.+      .||||++++
T Consensus        26 ~~~~~y~~~~~lg~G~~g----~Vy~~~~~~-----~~~~vaiK~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~   90 (314)
T 3com_A           26 QPEEVFDVLEKLGEGSYG----SVYKAIHKE-----TGQIVAIKQVPVESDLQEIIKEISIMQQC------DSPHVVKYY   90 (314)
T ss_dssp             ----CEEEEEECC----C----EEEEEEETT-----TCCEEEEEEEETTSCCHHHHHHHHHHHTC------CCTTBCCEE
T ss_pred             cchhhhhhheeeccCCCe----EEEEEEECC-----CCCEEEEEecCchHHHHHHHHHHHHHHhC------CCCCCccEE
Confidence            345789999999999999    999999987     79999999998766667789999999999      499999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     ..+.+|+||| |+++|+|.+++....        ..+++                    ..++.++.||+.
T Consensus        91 ~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~~--------~~~~~--------------------~~~~~i~~~i~~  136 (314)
T 3com_A           91 GSYF-----KNTDLWIVME-YCGAGSVSDIIRLRN--------KTLTE--------------------DEIATILQSTLK  136 (314)
T ss_dssp             EEEE-----ETTEEEEEEE-CCTTEEHHHHHHHHT--------CCCCH--------------------HHHHHHHHHHHH
T ss_pred             EEEE-----eCCEEEEEee-cCCCCCHHHHHHhcC--------CCCCH--------------------HHHHHHHHHHHH
Confidence            9998     6788999999 999999999997432        14554                    457889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      ||.|||++||+|+||||+||+++. ++.+||+|||++......         .+.|+|||.+ ....++.++|||||||+
T Consensus       137 ~l~~lH~~~i~H~dl~p~Nil~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~i  214 (314)
T 3com_A          137 GLEYLHFMRKIHRDIKAGNILLNT-EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI-QEIGYNCVADIWSLGIT  214 (314)
T ss_dssp             HHHHHHHTTEECCCCSGGGEEECT-TCCEEECCCTTCEECBTTBSCBCCCCSCGGGCCHHHH-SSSCBCTTHHHHHHHHH
T ss_pred             HHHHHHhCCCcCCCcCHHHEEECC-CCCEEEeecccchhhhhhccccCccCCCCCccChhhc-CCCCCCccccHHHHHHH
Confidence            999999999999999999999998 899999999999765432         3579999955 44568999999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      +|+|++|..||....            .......   ......+    .+.....+++++.+||.+||..||++|||+.+
T Consensus       215 l~~l~~g~~p~~~~~------------~~~~~~~---~~~~~~~----~~~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~  275 (314)
T 3com_A          215 AIEMAEGKPPYADIH------------PMRAIFM---IPTNPPP----TFRKPELWSDNFTDFVKQCLVKSPEQRATATQ  275 (314)
T ss_dssp             HHHHHHSSCTTTTSC------------HHHHHHH---HHHSCCC----CCSSGGGSCHHHHHHHHHHTCSCTTTSCCHHH
T ss_pred             HHHHHhCCCCCCCCC------------hHHHHHH---HhcCCCc----ccCCcccCCHHHHHHHHHHccCChhhCcCHHH
Confidence            999999999986321            1111111   1111111    12234456889999999999999999999999


Q ss_pred             HHcCCCCCCCC
Q 005958          394 ALRHPFLCGPR  404 (667)
Q Consensus       394 lL~HPwf~~~~  404 (667)
                      +|+||||++..
T Consensus       276 ll~~~~~~~~~  286 (314)
T 3com_A          276 LLQHPFVRSAK  286 (314)
T ss_dssp             HTTSHHHHTCC
T ss_pred             HHhCHHHhcCC
Confidence            99999998866

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=1.8e-41  Score=357.44  Aligned_cols=280  Identities=21%  Similarity=0.228  Sum_probs=206.1

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh----HHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA----QRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~----~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      .++|++.+.||+|+||    .||+|++...    +++.||+|++.....    .....+|+.+++.+..   +.||||++
T Consensus        10 ~~~y~~~~~lg~G~~g----~V~~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~---~~h~~i~~   78 (326)
T 1blx_A           10 DQQYECVAEIGEGAYG----KVFKARDLKN----GGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLET---FEHPNVVR   78 (326)
T ss_dssp             GGTEEEEEEEEEETTE----EEEEEEETTT----TTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHH---TCCTTBCC
T ss_pred             hhceeeeeeecccccE----EEEEEEecCC----CCEEEEEEEeccCcccccCCchhhHHHHHHHhhhc---cCCCCeEe
Confidence            4789999999999999    9999999631    689999999875321    2346789988888742   25999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++..........+++||| |+++ +|.+++.....       ..+++                    ..++.++.||
T Consensus        79 ~~~~~~~~~~~~~~~~~lv~e-~~~~-~L~~~l~~~~~-------~~~~~--------------------~~~~~~~~qi  129 (326)
T 1blx_A           79 LFDVCTVSRTDRETKLTLVFE-HVDQ-DLTTYLDKVPE-------PGVPT--------------------ETIKDMMFQL  129 (326)
T ss_dssp             EEEEEEEEECSSEEEEEEEEE-CCSC-BHHHHHHHSCT-------TCSCH--------------------HHHHHHHHHH
T ss_pred             eeeeeeecccCCCceEEEEEe-cCCC-CHHHHHHhccc-------CCCCH--------------------HHHHHHHHHH
Confidence            999987443335678999999 9996 99999987531       12444                    4678899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC--------CCCCCCCcccccCCCCCCchhhHHHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE--------DGPNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~--------~~~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      +.||.|||++||+||||||+|||++. ++.+||+|||++.....        +.+.|+|||++. ...++.++|||||||
T Consensus       130 ~~~l~~lH~~gi~H~dlkp~Nili~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~slG~  207 (326)
T 1blx_A          130 LRGLDFLHSHRVVHRDLKPQNILVTS-SGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLL-QSSYATPVDLWSVGC  207 (326)
T ss_dssp             HHHHHHHHHTTCCCCCCCGGGEEECT-TCCEEECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHT-TCCCCTHHHHHHHHH
T ss_pred             HHHHHHHHHCCceeccCCHHHeEEcC-CCCEEEecCcccccccCCCCccccccccceeCHHHHh-cCCCCcchhHHHHHH
Confidence            99999999999999999999999998 89999999999976542        247899999654 456899999999999


Q ss_pred             HHHHHHhCCCCChhhhh---hhhhhhccCCChhH-HHHHHH-HHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          313 MMAKMVLRELMDPLIFT---KFKSFLTKGIDPSC-LREFLL-QVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       313 iLyemltG~~PF~~~~~---~~~~~~~~g~~~~~-l~~~~~-~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      ++|+|++|++||.....   ...+....+.+... +..... ...................+++++++||.+||+.||++
T Consensus       208 il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~  287 (326)
T 1blx_A          208 IFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAK  287 (326)
T ss_dssp             HHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTT
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCcccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCccc
Confidence            99999999999963211   11111111111000 000000 00000000001111234568899999999999999999


Q ss_pred             CCCHHHHHcCCCCCCCCCC
Q 005958          388 RISCLDALRHPFLCGPRWR  406 (667)
Q Consensus       388 RpSa~elL~HPwf~~~~~~  406 (667)
                      |||+.|+|+||||++..+.
T Consensus       288 Rpt~~e~l~hp~~~~~~~~  306 (326)
T 1blx_A          288 RISAYSALSHPYFQDLERC  306 (326)
T ss_dssp             SCCHHHHHTSGGGTTCCCC
T ss_pred             CCCHHHHhcCccccccchh
Confidence            9999999999999988753

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=1.6e-41  Score=360.96  Aligned_cols=276  Identities=17%  Similarity=0.211  Sum_probs=208.2

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCC-cEEEEEEEcch-hhHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHN-TKVVLRQLISV-QAQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg-~~vAvK~i~~~-~~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      ...+..++|++.+.||+|+||    +||+|.+..     ++ +.||+|+++.. ...+.+.+|+.+++.+++.....|++
T Consensus        13 ~g~~~~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~   83 (355)
T 2eu9_A           13 IGDWLQERYEIVGNLGEGTFG----KVVECLDHA-----RGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFL   83 (355)
T ss_dssp             TTCEETTTEEEEEEEEEETTE----EEEEEEETT-----TTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHCTTSCSC
T ss_pred             cCceecccEEEEEEeeccCCe----EEEEEEecC-----CCceEEEEEEEcccccchhHHHHHHHHHHHHhhcCCCCcee
Confidence            344556899999999999999    999999987     44 78999999763 33456788999999998655556667


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+.+++++.     ..+.+|+||| |+++ +|.+++.....       ..+++                    ..++.++
T Consensus        84 ~~~~~~~~~-----~~~~~~lv~e-~~~~-~l~~~l~~~~~-------~~~~~--------------------~~~~~i~  129 (355)
T 2eu9_A           84 CVLMSDWFN-----FHGHMCIAFE-LLGK-NTFEFLKENNF-------QPYPL--------------------PHVRHMA  129 (355)
T ss_dssp             BCCEEEEEE-----ETTEEEEEEE-CCCC-BHHHHHHHTTT-------CCCCH--------------------HHHHHHH
T ss_pred             EEEeeeeee-----eCCeEEEEEe-ccCC-ChHHHHHhccC-------CCCCH--------------------HHHHHHH
Confidence            999999998     7789999999 9965 88888876431       13443                    5678899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEE-------------------cCCCCeEEEeeecccccccCC------CCCCCCc
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHI-------------------SPVDRHIKVGILGNAADFYED------GPNNSSP  292 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl-------------------~~~~~~vKL~DFGlA~~~~~~------~~~Y~AP  292 (667)
                      .||+.||.|||++||+||||||+|||+                   +. ++.+||+|||++......      .+.|+||
T Consensus       130 ~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~-~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aP  208 (355)
T 2eu9_A          130 YQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVK-NTSIRVADFGSATFDHEHHTTIVATRHYRPP  208 (355)
T ss_dssp             HHHHHHHHHHHTTTEECCCCCGGGEEESCCCEEEEECCC-CCCEEEES-CCCEEECCCTTCEETTSCCCSSCSCGGGCCH
T ss_pred             HHHHHHHHHHHHCCcccCCCCHHHEEEecccccccccccccccccccC-CCcEEEeecCccccccccccCCcCCCcccCC
Confidence            999999999999999999999999999                   34 689999999999865433      3679999


Q ss_pred             ccccCCCCCCchhhHHHHHHHHHHHHhCCCCChhh---hhhhhhhhccCCChhHHHHHH---------------------
Q 005958          293 DSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLI---FTKFKSFLTKGIDPSCLREFL---------------------  348 (667)
Q Consensus       293 E~l~~~~~ys~ksDIWSLGviLyemltG~~PF~~~---~~~~~~~~~~g~~~~~l~~~~---------------------  348 (667)
                      |++. ...|+.++|||||||++|||++|.+||...   .....+....+..+..+....                     
T Consensus       209 E~~~-~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (355)
T 2eu9_A          209 EVIL-ELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGR  287 (355)
T ss_dssp             HHHT-TCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHH
T ss_pred             eeee-cCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhc
Confidence            9655 456899999999999999999999999732   112222222333332221110                     


Q ss_pred             --HHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          349 --LQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       349 --~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                        ......    ...........++++.+||.+||+.||++|||++|+|+||||++..
T Consensus       288 ~~~~~~~~----~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~  341 (355)
T 2eu9_A          288 YVKENCKP----LKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALLHPFFAGLT  341 (355)
T ss_dssp             HHHHHCCC----GGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTSGGGGGCC
T ss_pred             cccccCCc----ccccccccchhHHHHHHHHHHHhcCChhhCcCHHHHhcChhhcCCC
Confidence              000000    0000011122356899999999999999999999999999999876

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=6.5e-42  Score=355.48  Aligned_cols=254  Identities=17%  Similarity=0.215  Sum_probs=199.1

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-hhHHHHHHHHHHHHHHhhccCCCCCcceEEEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGY  164 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~  164 (667)
                      ++|++.+.||+|+||    .||+|++..     +++.||||++... ...+.+.+|+.++++++      ||||++++++
T Consensus         6 ~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~------h~~i~~~~~~   70 (303)
T 1zy4_A            6 SDFEEIAVLGQGAFG----QVVKARNAL-----DSRYYAIKKIRHTEEKLSTILSEVMLLASLN------HQYVVRYYAA   70 (303)
T ss_dssp             HHEEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEEEEEHHHHHHHHHHHHHHTTCC------CTTBCCEEEE
T ss_pred             ccchhhheeccCCcE----EEEEEEEcC-----CCeEEEEEEEeccHHHHHHHHHHHHHHHhcC------chHHHHHHHH
Confidence            679999999999999    999999987     7999999999753 33456789999999994      9999999999


Q ss_pred             EEecc--------cCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          165 VSSHT--------TSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       165 ~~~~~--------~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      +....        ....+.+|+||| |+++|+|.+++....        ..+++                    ..++.+
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~lv~e-~~~~~~L~~~l~~~~--------~~~~~--------------------~~~~~i  121 (303)
T 1zy4_A           71 WLERRNFVKPMTAVKKKSTLFIQME-YCENGTLYDLIHSEN--------LNQQR--------------------DEYWRL  121 (303)
T ss_dssp             EEECCCCCC------CEEEEEEEEE-CCCSCBHHHHHHHSC--------GGGCH--------------------HHHHHH
T ss_pred             HHhhcchhhhhcccccCCceEEEEe-cCCCCCHHHhhhccc--------cccch--------------------HHHHHH
Confidence            86321        113578999999 999999999998643        12333                    457889


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-----------------------CCCCCCCcc
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-----------------------DGPNNSSPD  293 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-----------------------~~~~Y~APE  293 (667)
                      +.||+.||.|||++||+||||||+|||++. ++.+||+|||++.....                       +.+.|+|||
T Consensus       122 ~~qi~~~l~~LH~~~i~H~dlkp~Nil~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE  200 (303)
T 1zy4_A          122 FRQILEALSYIHSQGIIHRDLKPMNIFIDE-SRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATE  200 (303)
T ss_dssp             HHHHHHHHHHHHHTTCCCSCCCGGGEEECT-TSCEEECCCCCCSCTTC-------------------------CTTSCHH
T ss_pred             HHHHHHHHHHHHhCCeecccCCHHhEEEcC-CCCEEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcc
Confidence            999999999999999999999999999998 89999999999976532                       236799999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHH
Q 005958          294 SNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAG  373 (667)
Q Consensus       294 ~l~~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~  373 (667)
                      ++.+...++.++|||||||++|+|++   ||....           ..   .+...........   .........++.+
T Consensus       201 ~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~-----------~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~  260 (303)
T 1zy4_A          201 VLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGM-----------ER---VNILKKLRSVSIE---FPPDFDDNKMKVE  260 (303)
T ss_dssp             HHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHH-----------HH---HHHHHHHHSTTCC---CCTTCCTTTSHHH
T ss_pred             cccCCCCCcchhhHHHHHHHHHHHHh---ccCCch-----------hH---HHHHHhccccccc---cCccccccchHHH
Confidence            77666679999999999999999998   443110           01   1111111111100   0111234567889


Q ss_pred             HHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          374 WNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       374 ~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      ++||.+||+.||++|||+.++++||||....
T Consensus       261 ~~li~~~l~~dp~~Rps~~~ll~h~~~~~~~  291 (303)
T 1zy4_A          261 KKIIRLLIDHDPNKRPGARTLLNSGWLPVKH  291 (303)
T ss_dssp             HHHHHHHTCSSGGGSCCHHHHHHSSCSCCCC
T ss_pred             HHHHHHHHhcCcccCcCHHHHhCCCCcCCCC
Confidence            9999999999999999999999999998754

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=7.7e-42  Score=360.62  Aligned_cols=258  Identities=17%  Similarity=0.197  Sum_probs=203.2

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-hhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ..++|++.+.||+|+||    .||+|++..     +++.||||++... ...+.+.+|+.+++++.     .||||++++
T Consensus        22 ~~~~y~~~~~lg~G~~g----~Vy~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~-----~h~~i~~~~   87 (326)
T 2x7f_A           22 PAGIFELVELVGNGTYG----QVYKGRHVK-----TGQLAAIKVMDVTGDEEEEIKQEINMLKKYS-----HHRNIATYY   87 (326)
T ss_dssp             CTTTEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEECCSSTTHHHHHHHHHHHHHC-----CSTTBCCEE
T ss_pred             CCCcEEEEEEeccCCCE----EEEEEEECC-----CCCeEEEEEEecCcccHHHHHHHHHHHHhcc-----CCCCeeeee
Confidence            45889999999999999    999999987     7899999998753 34467789999999995     599999999


Q ss_pred             EEEEeccc-CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          163 GYVSSHTT-SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       163 ~~~~~~~~-~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      +++..... ...+.+|+||| |+++|+|.+++....       ...+++                    ..++.++.||+
T Consensus        88 ~~~~~~~~~~~~~~~~lv~e-~~~~~~L~~~l~~~~-------~~~~~~--------------------~~~~~i~~qi~  139 (326)
T 2x7f_A           88 GAFIKKNPPGMDDQLWLVME-FCGAGSVTDLIKNTK-------GNTLKE--------------------EWIAYICREIL  139 (326)
T ss_dssp             EEEEECC--CCCCEEEEEEE-CCTTEEHHHHHHHSG-------GGCCCH--------------------HHHHHHHHHHH
T ss_pred             eEEeeccCccccceEEEEEE-cCCCCcHHHHHHhcc-------cCCCCH--------------------HHHHHHHHHHH
Confidence            99984311 12578999999 999999999998642       113444                    45788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccC----CCCCCchhhHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMD----RRQMMIAFDMR  308 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~----~~~ys~ksDIW  308 (667)
                      .||.|||++||+||||||+|||++. ++.+||+|||++.....         +.+.|+|||++..    ...++.++|||
T Consensus       140 ~~l~~lH~~~ivH~dlkp~NIl~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~  218 (326)
T 2x7f_A          140 RGLSHLHQHKVIHRDIKGQNVLLTE-NAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLW  218 (326)
T ss_dssp             HHHHHHHHTTCCCCCCSGGGEEECT-TCCEEECCCTTTC-------------CCGGGCCHHHHC--------CCTTHHHH
T ss_pred             HHHHHHHHCCccccCCcHHHEEEcC-CCCEEEeeCcCceecCcCccccccccCCccccChhhhccccccCcCCCccchHH
Confidence            9999999999999999999999998 89999999999976543         2367999997652    45689999999


Q ss_pred             HHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCC
Q 005958          309 CVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  388 (667)
Q Consensus       309 SLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kR  388 (667)
                      ||||++|+|++|.+||....            ......   .+.....+     ......+++++.+||.+||..||++|
T Consensus       219 slG~il~~l~~g~~p~~~~~------------~~~~~~---~~~~~~~~-----~~~~~~~~~~l~~li~~~l~~dp~~R  278 (326)
T 2x7f_A          219 SLGITAIEMAEGAPPLCDMH------------PMRALF---LIPRNPAP-----RLKSKKWSKKFQSFIESCLVKNHSQR  278 (326)
T ss_dssp             HHHHHHHHHHHSSCTTTTSC------------HHHHHH---HHHHSCCC-----CCSCSCSCHHHHHHHHHHCCSSGGGS
T ss_pred             HHHHHHHHHHhCCCCCCCCc------------HHHHHH---HhhcCccc-----cCCccccCHHHHHHHHHHhccChhhC
Confidence            99999999999999985321            111111   11111111     11234578899999999999999999


Q ss_pred             CCHHHHHcCCCCCCCC
Q 005958          389 ISCLDALRHPFLCGPR  404 (667)
Q Consensus       389 pSa~elL~HPwf~~~~  404 (667)
                      ||+.++++||||++..
T Consensus       279 ps~~~ll~hp~~~~~~  294 (326)
T 2x7f_A          279 PATEQLMKHPFIRDQP  294 (326)
T ss_dssp             CCHHHHHTSHHHHCCT
T ss_pred             CCHHHHhhChHHhhCc
Confidence            9999999999998865

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=4.6e-43  Score=378.42  Aligned_cols=267  Identities=15%  Similarity=0.109  Sum_probs=189.8

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      .+|++.+.||+|+||    +||+|++..     +++.||||++....     ..+.+.+|+.+++.|++    .||||++
T Consensus        62 ~~y~~~~~lG~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~----~hp~iv~  128 (371)
T 3q60_A           62 RKLKLVEPLRVGDRS----VVFLVRDVE-----RLEDFALKVFTMGAENSRSELERLHEATFAAARLLG----ESPEEAR  128 (371)
T ss_dssp             EEEEEEEEEEECSSE----EEEEEEETT-----TTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             eeeeeeeeccCCCCE----EEEEEEECC-----CCceeEEEEEEecccccccHHHHHHHHHHHHHHhcc----cChhhhh
Confidence            459999999999999    999999997     79999999998632     23456788888888851    4999888


Q ss_pred             EE-------EEEEecccC------------CCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCC
Q 005958          161 VH-------GYVSSHTTS------------GRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSI  221 (667)
Q Consensus       161 l~-------~~~~~~~~~------------~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~  221 (667)
                      ++       +++..++..            ....+||||| |++ |+|.+++...+.        .+.+..         
T Consensus       129 ~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e-~~~-~~L~~~l~~~~~--------~~~~~~---------  189 (371)
T 3q60_A          129 DRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMP-AAS-VDLELLFSTLDF--------VYVFRG---------  189 (371)
T ss_dssp             ---CBCCCCEEEEETTSCSSSBCSCC---CCEEEEEEEEC-CCS-EEHHHHHHHHHH--------SCCCCH---------
T ss_pred             hceeEEeeehheecCCCCCeeeccCCcccceeeeEEEEec-CCC-CCHHHHHHHhcc--------ccchhh---------
Confidence            66       555433110            0155899999 999 699999987421        121110         


Q ss_pred             CCCCccccHHHH-HHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC------CCCCCCccc
Q 005958          222 GGPAASRQLRLI-RLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED------GPNNSSPDS  294 (667)
Q Consensus       222 ~~~~~~~~~~~i-~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------~~~Y~APE~  294 (667)
                            .....+ ..++.||+.||+|||++||+||||||+|||++. ++.+||+|||+|+.....      .+.|+|||+
T Consensus       190 ------~~~~~vk~~i~~qi~~aL~~LH~~~ivHrDikp~NIll~~-~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~  262 (371)
T 3q60_A          190 ------DEGILALHILTAQLIRLAANLQSKGLVHGHFTPDNLFIMP-DGRLMLGDVSALWKVGTRGPASSVPVTYAPREF  262 (371)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHHHTTEEETTCSGGGEEECT-TSCEEECCGGGEEETTCEEEGGGSCGGGCCHHH
T ss_pred             ------hhhhhhHHHHHHHHHHHHHHHHHCCCccCcCCHHHEEECC-CCCEEEEecceeeecCCCccCccCCcCCcChhh
Confidence                  001122 355699999999999999999999999999998 899999999999865432      278999996


Q ss_pred             ccC-CCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHH
Q 005958          295 NMD-RRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAG  373 (667)
Q Consensus       295 l~~-~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~  373 (667)
                      +.+ ...|+.++|||||||++|||++|++||..........  ..           .............++....+++++
T Consensus       263 ~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~--~~-----------~~~~~~~~~~~~~~~~~~~~~~~~  329 (371)
T 3q60_A          263 LNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKGS--WK-----------RPSLRVPGTDSLAFGSCTPLPDFV  329 (371)
T ss_dssp             HTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCCTTCTTC--CC-----------BCCTTSCCCCSCCCTTSSCCCHHH
T ss_pred             ccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCcCcccccc--hh-----------hhhhhhccccccchhhccCCCHHH
Confidence            653 2578999999999999999999999997432110000  00           000000001112233345789999


Q ss_pred             HHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          374 WNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       374 ~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      ++||.+||+.||++|||+.|+|+||||++..
T Consensus       330 ~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~  360 (371)
T 3q60_A          330 KTLIGRFLNFDRRRRLLPLEAMETPEFLQLQ  360 (371)
T ss_dssp             HHHHHHHTCSSTTTCCCHHHHTTSHHHHHHH
T ss_pred             HHHHHHHcCCChhhCCCHHHHhcCHHHHHHH
Confidence            9999999999999999999999999998754

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=1.7e-43  Score=382.97  Aligned_cols=256  Identities=14%  Similarity=0.014  Sum_probs=196.1

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcc-----hhhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS-----VQAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~-----~~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      .++|++.+.||+|+||    +||+|++..     +++.||||++..     ....+.+.+|+.+++.++   .+.||||+
T Consensus        72 ~~~y~~~~~lG~G~~g----~V~~a~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~---~l~hpniv  139 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPY----AYLEATDQE-----TGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLR---GIKNQKQA  139 (377)
T ss_dssp             CEEEEEEEEEEEETTE----EEEEEEC-C-----CCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGST---TCCSHHHH
T ss_pred             CceEEEcceeecCCCE----EEEEEEECC-----CCcEEEEEEEeeccccchHHHHHHHHHHHHHHhcc---ccCCHHHH
Confidence            4789999999999999    999999987     799999999864     223466789997666654   33699999


Q ss_pred             EEE-------EEEEeccc-------CCCC-----eEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCC
Q 005958          160 QVH-------GYVSSHTT-------SGRS-----LFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDS  220 (667)
Q Consensus       160 ~l~-------~~~~~~~~-------~~~~-----~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~  220 (667)
                      +++       +++.....       .+++     ..||||| |++ |+|.+++...+         .+++.         
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E-~~~-g~L~~~l~~~~---------~~~~~---------  199 (377)
T 3byv_A          140 KVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYP-RMQ-SNLQTFGEVLL---------SHSST---------  199 (377)
T ss_dssp             HHHHCBCCCSEEEECTTSCSEEEC------CEEESEEEEEE-CCS-EEHHHHHHHHH---------HTTTT---------
T ss_pred             HHHhhhhhhhhhhhccCCccccccccCCCceEEEEEEEEEe-ccC-CCHHHHHHhcc---------ccccc---------
Confidence            998       77763210       0001     3899999 995 59999998753         23321         


Q ss_pred             CCCCCccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC------CCCCCCCccc
Q 005958          221 IGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE------DGPNNSSPDS  294 (667)
Q Consensus       221 ~~~~~~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~------~~~~Y~APE~  294 (667)
                          ...++...+..|+.||+.||+|||++||+||||||+|||++. ++.+||+|||+|+....      + +.|+|||+
T Consensus       200 ----~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIll~~-~~~~kL~DFG~a~~~~~~~~~~~g-~~y~aPE~  273 (377)
T 3byv_A          200 ----HKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQ-RGGVFLTGFEHLVRDGARVVSSVS-RGFEPPEL  273 (377)
T ss_dssp             ----THHHHHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECT-TCCEEECCGGGCEETTCEEECCCC-TTCCCHHH
T ss_pred             ----cccccHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcC-CCCEEEEechhheecCCcccCCCC-cCccChhh
Confidence                012334567789999999999999999999999999999998 89999999999985432      3 88999997


Q ss_pred             ccCC----------CCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcc
Q 005958          295 NMDR----------RQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQ  364 (667)
Q Consensus       295 l~~~----------~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~  364 (667)
                      +.+.          ..|+.++|||||||++|||++|++||........               ...           ...
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~~Pf~~~~~~~~---------------~~~-----------~~~  327 (377)
T 3byv_A          274 EARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDAALGG---------------SEW-----------IFR  327 (377)
T ss_dssp             HHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSSCCC------CC---------------SGG-----------GGS
T ss_pred             hcccccccccccccccCChhhhHHHHHHHHHHHHHCCCCCcccccccc---------------hhh-----------hhh
Confidence            6654          2699999999999999999999999963221000               000           011


Q ss_pred             cccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          365 ILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       365 ~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      ....+++++++||.+||+.||++|||+.|+|+||||++..
T Consensus       328 ~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~hp~f~~~~  367 (377)
T 3byv_A          328 SCKNIPQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQLR  367 (377)
T ss_dssp             SCCCCCHHHHHHHHHHTCSSGGGCCCHHHHHTSHHHHHHH
T ss_pred             hccCCCHHHHHHHHHHcCCCchhCCCHHHHhhChHHHHHH
Confidence            2246788999999999999999999999999999997643

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=8.7e-42  Score=351.90  Aligned_cols=254  Identities=17%  Similarity=0.193  Sum_probs=203.7

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      ..++|++.+.||+|+||    .||+|.+..     +++.||+|++...    ...+.+.+|+.++++++      ||||+
T Consensus         4 ~~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~------h~~i~   68 (279)
T 2w5a_A            4 RAEDYEVLYTIGTGSYG----RCQKIRRKS-----DGKILVWKELDYGSMTEAEKQMLVSEVNLLRELK------HPNIV   68 (279)
T ss_dssp             CGGGEEEEEEEEECSSS----EEEEEEETT-----TCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCC------CTTBC
T ss_pred             chhheeeehhccCCCCc----EEEEEEECC-----CCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcC------CCCCC
Confidence            35789999999999999    999999997     7999999999752    23456789999999994      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++...   ....+|+||| |+++|+|.+++.....     ....+++                    ..++.++.|
T Consensus        69 ~~~~~~~~~---~~~~~~lv~e-~~~~~~L~~~l~~~~~-----~~~~~~~--------------------~~~~~i~~~  119 (279)
T 2w5a_A           69 RYYDRIIDR---TNTTLYIVME-YCEGGDLASVITKGTK-----ERQYLDE--------------------EFVLRVMTQ  119 (279)
T ss_dssp             CEEEEEEEG---GGTEEEEEEE-CCTTEEHHHHHHHHHH-----TTCCCCH--------------------HHHHHHHHH
T ss_pred             eEEEEEecC---CCceEEEEEe-CCCCCCHHHHHHhhcc-----cCCCCCH--------------------HHHHHHHHH
Confidence            999988643   5678999999 9999999999976421     0012444                    567889999


Q ss_pred             HHHHHHHHHHCC-----CcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchh
Q 005958          240 LLIGVNYLHSHG-----LAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAF  305 (667)
Q Consensus       240 Il~aL~yLHs~g-----IvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ks  305 (667)
                      |+.||.|||++|     |+||||||+|||++. ++.+||+|||++......         .+.|+|||++. ...++.++
T Consensus       120 i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~  197 (279)
T 2w5a_A          120 LTLALKECHRRSDGGHTVLHRDLKPANVFLDG-KQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMN-RMSYNEKS  197 (279)
T ss_dssp             HHHHHHHHHHHC------CCCCCSGGGEEECS-SSCEEECCCCHHHHC---CHHHHHHHSCCTTCCHHHHH-CC-CCHHH
T ss_pred             HHHHHHHHhcccCCCCeeEEeccchhhEEEcC-CCCEEEecCchheeeccccccccccCCCccccChHHhc-cCCCCchh
Confidence            999999999999     999999999999998 899999999999765433         37799999654 44689999


Q ss_pred             hHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCc
Q 005958          306 DMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       306 DIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      |||||||++|+|++|.+||..            .....+.+.+..   ...      ......+++++.+||.+||+.||
T Consensus       198 Di~slG~il~~l~~g~~p~~~------------~~~~~~~~~i~~---~~~------~~~~~~~~~~l~~li~~~l~~~p  256 (279)
T 2w5a_A          198 DIWSLGCLLYELCALMPPFTA------------FSQKELAGKIRE---GKF------RRIPYRYSDELNEIITRMLNLKD  256 (279)
T ss_dssp             HHHHHHHHHHHHHHSSCSSCC------------SSHHHHHHHHHH---TCC------CCCCTTSCHHHHHHHHHHTCSSG
T ss_pred             hHHHHHHHHHHHHHCCCCCcc------------cCHHHHHHHHhh---ccc------ccCCcccCHHHHHHHHHHcCCCc
Confidence            999999999999999999852            222222222221   111      12234678999999999999999


Q ss_pred             CCCCCHHHHHcCCCCCCCC
Q 005958          386 SKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       386 ~kRpSa~elL~HPwf~~~~  404 (667)
                      ++|||+.|+|+|+|+.+..
T Consensus       257 ~~Rps~~~ll~~~~~~~~~  275 (279)
T 2w5a_A          257 YHRPSVEEILENPLILEHH  275 (279)
T ss_dssp             GGSCCHHHHHTSTTCCGGG
T ss_pred             ccCCCHHHHHhChhhhhhc
Confidence            9999999999999998865

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=1.2e-41  Score=368.32  Aligned_cols=267  Identities=17%  Similarity=0.154  Sum_probs=205.1

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCC--CCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSN--SPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMY  154 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~--~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~  154 (667)
                      ...+..++|++++.||+|+||    .||+|++....  ...++..||||+++...   ..+.+.+|+.+|+.+.     .
T Consensus        75 ~~~~~~~~~~~~~~LG~G~fg----~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~  145 (370)
T 2psq_A           75 KWEFPRDKLTLGKPLGEGCFG----QVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIG-----K  145 (370)
T ss_dssp             TTBCCGGGEEEEEEESCCSSS----EEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSC-----C
T ss_pred             cccccHHHCEeeeEEeeCCCe----eEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhc-----C
Confidence            345677899999999999999    99999986321  12356789999997532   3356789999999994     4


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      ||||+++++++.     ..+.+|+||| |+++|+|.+++........ ..  .+.          ....+...++...+.
T Consensus       146 hpnIv~~~~~~~-----~~~~~~lv~e-~~~~g~L~~~l~~~~~~~~-~~--~~~----------~~~~~~~~~~~~~~~  206 (370)
T 2psq_A          146 HKNIINLLGACT-----QDGPLYVIVE-YASKGNLREYLRARRPPGM-EY--SYD----------INRVPEEQMTFKDLV  206 (370)
T ss_dssp             CTTBCCEEEEEC-----SSSSCEEEEE-CCTTCBHHHHHHHTCCC------------------------CCCCCCHHHHH
T ss_pred             CCCEeeEEEEEc-----cCCCEEEEEE-cCCCCCHHHHHHhhCCccc-cc--ccc----------ccccccccCCHHHHH
Confidence            999999999998     7788999999 9999999999987642110 00  000          000111234456788


Q ss_pred             HHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-----------CCCCCcccccCCCCCCc
Q 005958          235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-----------PNNSSPDSNMDRRQMMI  303 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-----------~~Y~APE~l~~~~~ys~  303 (667)
                      .++.||+.||.|||++||+||||||+|||++. ++.+||+|||+|+......           +.|+|||++.+ ..|+.
T Consensus       207 ~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~-~~~~~  284 (370)
T 2psq_A          207 SCTYQLARGMEYLASQKCIHRDLAARNVLVTE-NNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFD-RVYTH  284 (370)
T ss_dssp             HHHHHHHHHHHHHHHTTEECSCCCGGGEEECT-TCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHT-CCCCH
T ss_pred             HHHHHHHHHHHHHHhCCeeccccchhhEEECC-CCCEEEccccCCcccCcccceecccCCCcccceECHhHhcC-CCCCc
Confidence            99999999999999999999999999999998 8999999999998654321           46999996654 56999


Q ss_pred             hhhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhh
Q 005958          304 AFDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLA  382 (667)
Q Consensus       304 ksDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~  382 (667)
                      ++|||||||++|||++ |.+||.+            .+...+...+....         .......+++++.+||.+||+
T Consensus       285 ~~DvwslG~il~ellt~g~~p~~~------------~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~li~~~l~  343 (370)
T 2psq_A          285 QSDVWSFGVLMWEIFTLGGSPYPG------------IPVEELFKLLKEGH---------RMDKPANCTNELYMMMRDCWH  343 (370)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCSSTT------------CCGGGHHHHHHTTC---------CCCCCTTSCHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCCC------------CCHHHHHHHHhcCC---------CCCCCCCCCHHHHHHHHHHcC
Confidence            9999999999999999 9999853            23333333322111         112345678899999999999


Q ss_pred             cCcCCCCCHHHHHcC
Q 005958          383 TKPSKRISCLDALRH  397 (667)
Q Consensus       383 ~DP~kRpSa~elL~H  397 (667)
                      .||++|||+.|++++
T Consensus       344 ~dP~~Rpt~~ell~~  358 (370)
T 2psq_A          344 AVPSQRPTFKQLVED  358 (370)
T ss_dssp             SSGGGSCCHHHHHHH
T ss_pred             CChhhCcCHHHHHHH
Confidence            999999999999874

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=6.3e-42  Score=366.56  Aligned_cols=272  Identities=21%  Similarity=0.249  Sum_probs=206.3

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      .++|.+.+.||+|+||    .||+|++..     +++.||||++...    ...+.+.+|+.+++.++      ||||++
T Consensus        23 ~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~------h~~iv~   87 (353)
T 3coi_A           23 PKTYVSPTHVGSGAYG----SVCSAIDKR-----SGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQ------HENVIG   87 (353)
T ss_dssp             ETTEEEEEEEEECSSE----EEEEEEETT-----TTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCC------CTTBCC
T ss_pred             CceEEEeeeEecCCCe----EEEEEEECC-----CCCEEEEEEecccccchHHHHHHHHHHHHHHhcC------CCCccc
Confidence            3789999999999999    999999987     8999999999752    22356689999999994      999999


Q ss_pred             EEEEEEeccc-CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          161 VHGYVSSHTT-SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       161 l~~~~~~~~~-~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      +++++..... .....+|+||| |+++ +|.+++..           .+++                    ..++.++.|
T Consensus        88 ~~~~~~~~~~~~~~~~~~lv~e-~~~~-~l~~~~~~-----------~~~~--------------------~~~~~i~~q  134 (353)
T 3coi_A           88 LLDVFTPASSLRNFYDFYLVMP-FMQT-DLQKIMGL-----------KFSE--------------------EKIQYLVYQ  134 (353)
T ss_dssp             CSEEECSCSSGGGCCCCEEEEE-CCSE-EGGGTTTS-----------CCCH--------------------HHHHHHHHH
T ss_pred             HhheEecccccccceeEEEEec-cccC-CHHHHhcC-----------CCCH--------------------HHHHHHHHH
Confidence            9999973210 01124699999 9986 98877642           3454                    457889999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC------CCCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE------DGPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~------~~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      |+.||.|||++||+||||||+|||++. ++.+||+|||++.....      +.+.|+|||++.+...++.++|||||||+
T Consensus       135 i~~al~~LH~~~ivH~dlkp~NIl~~~-~~~~kl~Dfg~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~i  213 (353)
T 3coi_A          135 MLKGLKYIHSAGVVHRDLKPGNLAVNE-DCELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCI  213 (353)
T ss_dssp             HHHHHHHHHHTTCCCSSCCGGGEEECT-TCCEEECSTTCTTC--------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHCCcccCCCCHHHEeECC-CCcEEEeecccccCCCCCccccccCcCcCCHHHHhCcCCCCchhhHHHHHHH
Confidence            999999999999999999999999998 89999999999976543      23679999977776789999999999999


Q ss_pred             HHHHHhCCCCChhh---hhhhhhhhccCCChhHHHHH-----HHHHhccCCCCCCCC-cccccCCCHHHHHHHHHhhhcC
Q 005958          314 MAKMVLRELMDPLI---FTKFKSFLTKGIDPSCLREF-----LLQVLNRNSSSGNTG-FQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       314 LyemltG~~PF~~~---~~~~~~~~~~g~~~~~l~~~-----~~~~~~~~~~~~~~~-~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      +|+|++|++||...   .....+....|.++..+...     ........+...... ....+..++++++||.+||+.|
T Consensus       214 l~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d  293 (353)
T 3coi_A          214 MAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELD  293 (353)
T ss_dssp             HHHHHHSSCSSBSSCHHHHHHHHHHHHCBCCHHHHTTCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSC
T ss_pred             HHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCC
Confidence            99999999999742   22222333333333222110     001111111111111 1234577899999999999999


Q ss_pred             cCCCCCHHHHHcCCCCCCCCC
Q 005958          385 PSKRISCLDALRHPFLCGPRW  405 (667)
Q Consensus       385 P~kRpSa~elL~HPwf~~~~~  405 (667)
                      |++|||++|+|+||||+....
T Consensus       294 p~~Rpt~~e~l~hp~f~~~~~  314 (353)
T 3coi_A          294 VDKRLTAAQALTHPFFEPFRD  314 (353)
T ss_dssp             TTTSCCHHHHHTSGGGTTTCC
T ss_pred             cccCCCHHHHhcCcchhhccC
Confidence            999999999999999988653

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=8.7e-42  Score=365.05  Aligned_cols=283  Identities=16%  Similarity=0.133  Sum_probs=207.6

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCC
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      ..+.+..++|++.+.||+|+||    .||+|++.......+++.||||+++...   ..+.+.+|+++++++.     +|
T Consensus        15 ~~~~~~~~~y~~~~~lG~G~~g----~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~h   85 (359)
T 3vhe_A           15 SKWEFPRDRLKLGKPLGRGAFG----QVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIG-----HH   85 (359)
T ss_dssp             HHHBCCGGGEEEEEEEEECSSE----EEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHC-----CC
T ss_pred             ccccccccceeeceeecCCCCc----eEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhc-----CC
Confidence            3456677999999999999999    9999997654444578999999997632   3345789999999996     59


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcc----ccccc--------CCCHHHHhhc-------
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPT----LEATL--------ALDEESVRKV-------  216 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~----l~~~~--------~l~E~~a~~~-------  216 (667)
                      |||+++++++..    .+..+++||| |+++|+|.+++........    ....+        .....-.+++       
T Consensus        86 pniv~~~~~~~~----~~~~~~iv~e-~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
T 3vhe_A           86 LNVVNLLGACTK----PGGPLMVIVE-FCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQ  160 (359)
T ss_dssp             TTBCCEEEEECS----TTSCCEEEEE-CCTTEEHHHHHHTTTTSBCSCC-------------------------------
T ss_pred             cceeeeeeeeec----CCCceEEEEE-ecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccc
Confidence            999999999972    3456899999 9999999999987542100    00000        0000000000       


Q ss_pred             ----------------C--CCCCCCCCccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecc
Q 005958          217 ----------------G--DDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGN  278 (667)
Q Consensus       217 ----------------~--~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGl  278 (667)
                                      .  ..........++...++.++.||+.||.|||++||+||||||+|||++. ++.+||+|||+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~ivH~Dikp~NIll~~-~~~~kl~Dfg~  239 (359)
T 3vhe_A          161 SSASSGFVEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSE-KNVVKICDFGL  239 (359)
T ss_dssp             -----------------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECG-GGCEEECCCGG
T ss_pred             cccccccccccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcC-CCcEEEEeccc
Confidence                            0  0000011223667889999999999999999999999999999999998 89999999999


Q ss_pred             cccccCCC-----------CCCCCcccccCCCCCCchhhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHH
Q 005958          279 AADFYEDG-----------PNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLRE  346 (667)
Q Consensus       279 A~~~~~~~-----------~~Y~APE~l~~~~~ys~ksDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~  346 (667)
                      +.......           +.|+|||++. ...|+.++|||||||++|||++ |.+||...           .....+..
T Consensus       240 a~~~~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~~Di~slG~il~ellt~g~~p~~~~-----------~~~~~~~~  307 (359)
T 3vhe_A          240 ARDIYKDPDYVRKGDARLPLKWMAPETIF-DRVYTIQSDVWSFGVLLWEIFSLGASPYPGV-----------KIDEEFCR  307 (359)
T ss_dssp             GSCTTSCTTCEEC--CEECGGGCCHHHHH-HCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC-----------CCSHHHHH
T ss_pred             eeeecccccchhccccCCCceeEChhhhc-CCCCCchhhhhhHHHHHHHHHhcCCCCCCcc-----------chhHHHHH
Confidence            98653322           4599999654 4569999999999999999998 99998632           11122222


Q ss_pred             HHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcC
Q 005958          347 FLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRH  397 (667)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~H  397 (667)
                      .+....         .......+++++.+||.+||+.||++|||+.|+++|
T Consensus       308 ~~~~~~---------~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~  349 (359)
T 3vhe_A          308 RLKEGT---------RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  349 (359)
T ss_dssp             HHHHTC---------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHcCC---------CCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHH
Confidence            222111         122335578999999999999999999999999986

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=100.00  E-value=5.8e-42  Score=362.42  Aligned_cols=248  Identities=18%  Similarity=0.181  Sum_probs=204.8

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh--------HHHHHHHHHHHHHHhhccC
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA--------QRRGRRAIEVLKKLVRRRL  152 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~--------~~~~~rEi~iL~~L~~~~~  152 (667)
                      .....++|++.+.||+|+||    .||+|++..     +++.||||++.....        ...+.+|+.+++++.+   
T Consensus        38 ~~~~~~~y~~~~~lg~G~~g----~Vy~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~---  105 (320)
T 3a99_A           38 KEPLESQYQVGPLLGSGGFG----SVYSGIRVS-----DNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS---  105 (320)
T ss_dssp             --CCTTTEEEEEECSSSSSC----EEEEEEETT-----TTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCS---
T ss_pred             cCCccCceEEEEEEeeCCCe----EEEEEEECC-----CCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhcc---
Confidence            34456889999999999999    999999987     799999999976422        2345789999999962   


Q ss_pred             CCCCcceEEEEEEEecccCCCCeEEEEEccCCCC-CCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHH
Q 005958          153 MYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGS-FSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLR  231 (667)
Q Consensus       153 ~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~-GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~  231 (667)
                       .||||+++++++.     ..+..++||| ++.+ ++|.+++...+         .+++                    .
T Consensus       106 -~~~~i~~~~~~~~-----~~~~~~lv~e-~~~~~~~L~~~l~~~~---------~l~~--------------------~  149 (320)
T 3a99_A          106 -GFSGVIRLLDWFE-----RPDSFVLILE-RPEPVQDLFDFITERG---------ALQE--------------------E  149 (320)
T ss_dssp             -SSCSBCCEEEEEE-----CSSEEEEEEE-CCSSEEEHHHHHHHHC---------SCCH--------------------H
T ss_pred             -CCCCceEEEEEEe-----cCCcEEEEEE-cCCCCccHHHHHhccC---------CCCH--------------------H
Confidence             3799999999999     7789999999 8765 79999998754         4554                    4


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-------CCCCCCcccccCCCCCCch
Q 005958          232 LIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-------GPNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       232 ~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-------~~~Y~APE~l~~~~~ys~k  304 (667)
                      .++.++.||+.||.|||++||+||||||+|||++..++.+||+|||++......       .+.|+|||++.+...++.+
T Consensus       150 ~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  229 (320)
T 3a99_A          150 LARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRS  229 (320)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCSSCBCCCCSCGGGSCHHHHHHSCBCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCcEeCCCCHHHEEEeCCCCCEEEeeCccccccccccccCCCCCccCCChHHhccCCCCCcc
Confidence            577899999999999999999999999999999944899999999999866543       3679999977666656889


Q ss_pred             hhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          305 FDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       305 sDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      +|||||||++|||++|+.||.......                     ..       .......+++++.+||.+||+.|
T Consensus       230 ~Di~slG~il~el~~g~~pf~~~~~~~---------------------~~-------~~~~~~~~~~~~~~li~~~l~~d  281 (320)
T 3a99_A          230 AAVWSLGILLYDMVCGDIPFEHDEEII---------------------RG-------QVFFRQRVSSECQHLIRWCLALR  281 (320)
T ss_dssp             HHHHHHHHHHHHHHHSSCSCCSHHHHH---------------------HC-------CCCCSSCCCHHHHHHHHHHTCSS
T ss_pred             chHHhHHHHHHHHHHCCCCCCChhhhh---------------------cc-------cccccccCCHHHHHHHHHHccCC
Confidence            999999999999999999985322110                     00       01123457889999999999999


Q ss_pred             cCCCCCHHHHHcCCCCCCCC
Q 005958          385 PSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       385 P~kRpSa~elL~HPwf~~~~  404 (667)
                      |++|||++|+++||||++..
T Consensus       282 p~~Rps~~~ll~hp~~~~~~  301 (320)
T 3a99_A          282 PSDRPTFEEIQNHPWMQDVL  301 (320)
T ss_dssp             GGGSCCHHHHHTSGGGSSCC
T ss_pred             hhhCcCHHHHhcCHhhcCcc
Confidence            99999999999999999865

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=7.8e-42  Score=354.72  Aligned_cols=260  Identities=16%  Similarity=0.166  Sum_probs=204.4

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--hHHHHHHHHHHHHHHhhccCCCCC
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--AQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      ....+..++|.....||+|+||    .||+|.+..     +++.||||.+....  ..+.+.+|+.+++.++      ||
T Consensus        15 ~~~~~~~~~~~~~~~lg~G~~g----~Vy~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~------h~   79 (295)
T 2clq_A           15 LEYDYEYDENGDRVVLGKGTYG----IVYAGRDLS-----NQVRIAIKEIPERDSRYSQPLHEEIALHKHLK------HK   79 (295)
T ss_dssp             CCEEECBCTTSSBCEEEECSSS----EEEEEEETT-----TCCEEEEEEEECCCC---HHHHHHHHHHHTCC------CT
T ss_pred             ccccccccCCCCcEEEeecCcE----EEEEEEECC-----CCeEEEEEEccCCchHHHHHHHHHHHHHHhCC------CC
Confidence            3445566777777799999999    999999987     78999999987532  3456789999999994      99


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++.     ..+..++||| |+++|+|.+++.....      ...+++                    ..++.+
T Consensus        80 ~iv~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~~------~~~~~~--------------------~~~~~~  127 (295)
T 2clq_A           80 NIVQYLGSFS-----ENGFIKIFME-QVPGGSLSALLRSKWG------PLKDNE--------------------QTIGFY  127 (295)
T ss_dssp             TBCCEEEEEE-----ETTEEEEEEE-CCSEEEHHHHHHHTTC------CCTTCH--------------------HHHHHH
T ss_pred             CEeeEeeEEE-----eCCcEEEEEE-eCCCCCHHHHHHhhcc------CCCccH--------------------HHHHHH
Confidence            9999999998     6789999999 9999999999986421      012333                    467889


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCC-CCCCchhh
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDR-RQMMIAFD  306 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~-~~ys~ksD  306 (667)
                      +.||+.||.|||++||+||||||+|||++..++.+||+|||++.....         +.+.|+|||++.+. ..++.++|
T Consensus       128 ~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~D  207 (295)
T 2clq_A          128 TKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPRGYGKAAD  207 (295)
T ss_dssp             HHHHHHHHHHHHHTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC-----CCCCCCGGGCCHHHHHHGGGGCSHHHH
T ss_pred             HHHHHHHHHHHHhCCEEccCCChhhEEEECCCCCEEEeecccccccCCCCCcccccCCCccccChhhhcCCCCCCCcHHH
Confidence            999999999999999999999999999987578999999999976543         23679999976543 34889999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          307 MRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       307 IWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      ||||||++|+|++|+.||.....          ........  .....       .......+++++.+||.+||+.||+
T Consensus       208 i~slG~il~~l~~g~~pf~~~~~----------~~~~~~~~--~~~~~-------~~~~~~~~~~~~~~li~~~l~~dp~  268 (295)
T 2clq_A          208 IWSLGCTIIEMATGKPPFYELGE----------PQAAMFKV--GMFKV-------HPEIPESMSAEAKAFILKCFEPDPD  268 (295)
T ss_dssp             HHHHHHHHHHHHHTSCTTGGGSS----------HHHHHHHH--HHHCC-------CCCCCTTSCHHHHHHHHHTTCSSTT
T ss_pred             HHHHHHHHHHHHHCCCCccCCCc----------hhHHHHhh--ccccc-------cccccccCCHHHHHHHHHHccCChh
Confidence            99999999999999999963211          11111111  11111       1123356789999999999999999


Q ss_pred             CCCCHHHHHcCCCCCCCC
Q 005958          387 KRISCLDALRHPFLCGPR  404 (667)
Q Consensus       387 kRpSa~elL~HPwf~~~~  404 (667)
                      +|||++++|+||||+...
T Consensus       269 ~Rps~~~ll~~~~~~~~~  286 (295)
T 2clq_A          269 KRACANDLLVDEFLKVSS  286 (295)
T ss_dssp             TSCCHHHHHTSGGGCC--
T ss_pred             hCCCHHHHhcChhhhhcc
Confidence            999999999999998765

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=1.2e-41  Score=353.43  Aligned_cols=252  Identities=17%  Similarity=0.194  Sum_probs=205.7

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      ...++|++.+.||+|+||    .||+|.+..     +++.||||++....    ..+.+.+|++++++++      ||||
T Consensus        19 ~~~~~y~i~~~lg~G~~g----~V~~~~~~~-----~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~------h~~i   83 (287)
T 2wei_A           19 TFAERYNIVCMLGKGSFG----EVLKCKDRI-----TQQEYAVKVINKASAKNKDTSTILREVELLKKLD------HPNI   83 (287)
T ss_dssp             HHHHHEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCC------CTTB
T ss_pred             HHhhcceeeEEEcCCCCE----EEEEEEEcC-----CCcEEEEEEecccccchHHHHHHHHHHHHHHhcc------CCCc
Confidence            345789999999999999    999999987     78999999997532    3456789999999994      9999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      +++++++.     ..+.+++||| |+.+++|.+++....         .+++                    ..++.++.
T Consensus        84 ~~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~~i~~  128 (287)
T 2wei_A           84 MKLFEILE-----DSSSFYIVGE-LYTGGELFDEIIKRK---------RFSE--------------------HDAARIIK  128 (287)
T ss_dssp             CCEEEEEE-----CSSEEEEEEC-CCCSCBHHHHHHHHS---------SCCH--------------------HHHHHHHH
T ss_pred             cEEEEEEe-----CCCeEEEEEE-ccCCCCHHHHHHhcC---------CCCH--------------------HHHHHHHH
Confidence            99999998     7789999999 999999999987654         4554                    45788999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCC--CCeEEEeeecccccccCCC--------CCCCCcccccCCCCCCchhhHH
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPV--DRHIKVGILGNAADFYEDG--------PNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~--~~~vKL~DFGlA~~~~~~~--------~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      ||+.||.|||++||+||||||+||+++..  ++.+||+|||++.......        +.|+|||.+.+  .++.++|||
T Consensus       129 qi~~~l~~LH~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~~Di~  206 (287)
T 2wei_A          129 QVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRG--TYDEKCDVW  206 (287)
T ss_dssp             HHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCCSSCSCHHHHHTTCCHHHHTT--CCCTHHHHH
T ss_pred             HHHHHHHHHHHCCeeccCCChhhEEEecCCCcccEEEeccCcceeecCCCccccccCcccccChHHhcC--CCCCchhhH
Confidence            99999999999999999999999999762  3479999999998665432        56999996543  489999999


Q ss_pred             HHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCC
Q 005958          309 CVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  388 (667)
Q Consensus       309 SLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kR  388 (667)
                      ||||++|+|++|.+||..            .........+   ......   ...+....+++++.+||.+||..||++|
T Consensus       207 slG~~l~~l~~g~~p~~~------------~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~li~~~l~~dp~~R  268 (287)
T 2wei_A          207 SAGVILYILLSGTPPFYG------------KNEYDILKRV---ETGKYA---FDLPQWRTISDDAKDLIRKMLTFHPSLR  268 (287)
T ss_dssp             HHHHHHHHHHHSSCSSCC------------SSHHHHHHHH---HHCCCC---CCSGGGTTSCHHHHHHHHHHTCSSGGGS
T ss_pred             hHHHHHHHHHhCCCCCCC------------CCHHHHHHHH---HcCCCC---CCchhhhhcCHHHHHHHHHHcccChhhC
Confidence            999999999999999852            2222222222   111111   1223345678999999999999999999


Q ss_pred             CCHHHHHcCCCCCCCC
Q 005958          389 ISCLDALRHPFLCGPR  404 (667)
Q Consensus       389 pSa~elL~HPwf~~~~  404 (667)
                      ||+.|+|+||||++..
T Consensus       269 ps~~ell~hp~~~~~~  284 (287)
T 2wei_A          269 ITATQCLEHPWIQKYS  284 (287)
T ss_dssp             CCHHHHHHSHHHHHHC
T ss_pred             cCHHHHhcCHHHhccc
Confidence            9999999999998754

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=1.3e-41  Score=354.08  Aligned_cols=265  Identities=19%  Similarity=0.220  Sum_probs=199.4

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--hHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--AQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      .+..++|++++.||+|+||    +||+|+... .+..+++.||||++....  ..+.+.+|++++++++      ||||+
T Consensus         6 ~~~~~~~~~~~~lg~G~~g----~V~~~~~~~-~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~------h~~iv   74 (295)
T 3ugc_A            6 QFEERHLKFLQQLGKGNFG----SVEMCRYDP-LQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQ------HDNIV   74 (295)
T ss_dssp             CCCGGGEEEEEEEEECSSE----EEEEEEECT-TCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCC------CTTBC
T ss_pred             cCCHHHhhhhheeeccCCE----EEEEEEEec-ccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCC------CCCEe
Confidence            4667899999999999999    999999532 111278999999997532  3356789999999995      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++...   +...+++||| |+++|+|.+++....        ..+++                    ..+..++.|
T Consensus        75 ~~~~~~~~~---~~~~~~lv~e-~~~~~~L~~~l~~~~--------~~~~~--------------------~~~~~~~~q  122 (295)
T 3ugc_A           75 KYKGVCYSA---GRRNLKLIME-YLPYGSLRDYLQKHK--------ERIDH--------------------IKLLQYTSQ  122 (295)
T ss_dssp             CEEEEECHH---HHTSCEEEEE-CCTTCBHHHHHHHCG--------GGCCH--------------------HHHHHHHHH
T ss_pred             eEEEEEecC---CCCceEEEEE-eCCCCCHHHHHHhcc--------cccCH--------------------HHHHHHHHH
Confidence            999998633   4467899999 999999999998743        13444                    457789999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC------------CCCCCcccccCCCCCCchhhH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG------------PNNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~------------~~Y~APE~l~~~~~ys~ksDI  307 (667)
                      |+.||.|||++||+||||||+|||++. ++.+||+|||++.......            ..|+|||.+. ...++.++||
T Consensus       123 i~~~l~~lH~~~ivH~Dikp~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di  200 (295)
T 3ugc_A          123 ICKGMEYLGTKRYIHRDLATRNILVEN-ENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLT-ESKFSVASDV  200 (295)
T ss_dssp             HHHHHHHHHHTTCCCSCCSGGGEEEEE-TTEEEECCCCSCC-------------CTTCGGGGCCHHHHH-HCCCCHHHHH
T ss_pred             HHHHHHHHhcCCcccCCCCHhhEEEcC-CCeEEEccCcccccccCCcceeeeccCCCCccceeCcHHhc-CCCCChHHHH
Confidence            999999999999999999999999998 8999999999998654321            3499999654 4568999999


Q ss_pred             HHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          308 RCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       308 WSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      |||||++|||++|..||......+.........................     ..+....+++++.+||.+||+.||++
T Consensus       201 ~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~li~~~l~~dp~~  275 (295)
T 3ugc_A          201 WSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNG-----RLPRPDGCPDEIYMIMTECWNNNVNQ  275 (295)
T ss_dssp             HHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTC-----CCCCCTTCCHHHHHHHHHHSCSSGGG
T ss_pred             HHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHHHHHhccC-----cCCCCcCcCHHHHHHHHHHcCCChhh
Confidence            9999999999999999864322221111111111111111111111111     22345578899999999999999999


Q ss_pred             CCCHHHHHc
Q 005958          388 RISCLDALR  396 (667)
Q Consensus       388 RpSa~elL~  396 (667)
                      |||+.|+++
T Consensus       276 Rps~~el~~  284 (295)
T 3ugc_A          276 RPSFRDLAL  284 (295)
T ss_dssp             SCCHHHHHH
T ss_pred             CCCHHHHHH
Confidence            999999986

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=2.3e-41  Score=353.59  Aligned_cols=246  Identities=20%  Similarity=0.261  Sum_probs=203.4

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      .+.|++++.||+|+||    .||+|++..     +++.||||++...   ...+.+.+|+.+++.+.      ||||+++
T Consensus        21 ~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~~   85 (303)
T 3a7i_A           21 EELFTKLEKIGKGSFG----EVFKGIDNR-----TQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCD------SPYVTKY   85 (303)
T ss_dssp             GGTEEEEEEEEECSSS----EEEEEEETT-----TCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCC------CTTBCCE
T ss_pred             HHHHHHhhhhcccCCe----EEEEEEECC-----CCcEEEEEEecccccHHHHHHHHHHHHHHHhCC------CCCEeEE
Confidence            4679999999999999    999999987     7999999999753   23466789999999994      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     ..+.+|+||| |+++++|.+++...          .+++                    ..++.++.||+
T Consensus        86 ~~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~----------~~~~--------------------~~~~~~~~qi~  129 (303)
T 3a7i_A           86 YGSYL-----KDTKLWIIME-YLGGGSALDLLEPG----------PLDE--------------------TQIATILREIL  129 (303)
T ss_dssp             EEEEE-----ETTEEEEEEE-CCTTEEHHHHHTTS----------CCCH--------------------HHHHHHHHHHH
T ss_pred             EEEEe-----cCCeEEEEEE-eCCCCcHHHHHhcC----------CCCH--------------------HHHHHHHHHHH
Confidence            99998     6789999999 99999999998752          3454                    45788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      .||.|||++||+||||||+||+++. ++.+||+|||++......         .+.|+|||++ ....++.++|||||||
T Consensus       130 ~~l~~lH~~~i~H~dl~p~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~  207 (303)
T 3a7i_A          130 KGLDYLHSEKKIHRDIKAANVLLSE-HGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVI-KQSAYDSKADIWSLGI  207 (303)
T ss_dssp             HHHHHHHHTTEECCCCSGGGEEECT-TSCEEECCCTTCEECBTTBCCBCCCCSCGGGCCHHHH-TTCCBCTHHHHHHHHH
T ss_pred             HHHHHHHHCCCccCCCChheEEECC-CCCEEEeecccceecCccccccCccCCCcCccCHHHH-hcCCCCchhhhHHHHH
Confidence            9999999999999999999999998 899999999999765432         3569999955 4556899999999999


Q ss_pred             HHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHH
Q 005958          313 MMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCL  392 (667)
Q Consensus       313 iLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~  392 (667)
                      ++|+|++|++||...            ........+.   ....      ......+++++.+||.+||+.||++|||+.
T Consensus       208 il~~l~~g~~p~~~~------------~~~~~~~~~~---~~~~------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~  266 (303)
T 3a7i_A          208 TAIELARGEPPHSEL------------HPMKVLFLIP---KNNP------PTLEGNYSKPLKEFVEACLNKEPSFRPTAK  266 (303)
T ss_dssp             HHHHHHHSSCTTTTS------------CHHHHHHHHH---HSCC------CCCCSSCCHHHHHHHHHHCCSSGGGSCCHH
T ss_pred             HHHHHccCCCCCCCc------------CHHHHHHHhh---cCCC------CCCccccCHHHHHHHHHHcCCChhhCcCHH
Confidence            999999999998532            1222222211   1111      123346788999999999999999999999


Q ss_pred             HHHcCCCCCCCC
Q 005958          393 DALRHPFLCGPR  404 (667)
Q Consensus       393 elL~HPwf~~~~  404 (667)
                      |+++||||....
T Consensus       267 ~ll~~~~~~~~~  278 (303)
T 3a7i_A          267 ELLKHKFILRNA  278 (303)
T ss_dssp             HHTTCHHHHHHC
T ss_pred             HHhhChhhhcCC
Confidence            999999997644

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=1.7e-41  Score=348.62  Aligned_cols=244  Identities=16%  Similarity=0.161  Sum_probs=199.2

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      +.+..++|++.+.||+|+||    .||+|.+..      ++.||+|++.... ..+.+.+|++++++++      ||||+
T Consensus         5 ~~i~~~~y~~~~~lg~G~~g----~V~~~~~~~------~~~vavK~~~~~~~~~~~~~~E~~~l~~l~------h~~i~   68 (269)
T 4hcu_A            5 WVIDPSELTFVQEIGSGQFG----LVHLGYWLN------KDKVAIKTIREGAMSEEDFIEEAEVMMKLS------HPKLV   68 (269)
T ss_dssp             CBCCGGGEEEEEEEEECSSC----EEEEEEETT------TEEEEEEEECTTSBCHHHHHHHHHHHHTCC------CTTBC
T ss_pred             EEeChhhceeeheecCCCcc----EEEEEEecC------CCeEEEEEecccccCHHHHHHHHHHHHhCC------CCCEe
Confidence            45667899999999999999    999999874      6789999998643 3456889999999995      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++.     +.+..++||| |+++|+|.+++....        ..+++                    ..++.++.|
T Consensus        69 ~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~--------~~~~~--------------------~~~~~i~~~  114 (269)
T 4hcu_A           69 QLYGVCL-----EQAPICLVFE-FMEHGCLSDYLRTQR--------GLFAA--------------------ETLLGMCLD  114 (269)
T ss_dssp             CEEEEEC-----SSSSEEEEEE-CCTTCBHHHHHHTTT--------TCCCH--------------------HHHHHHHHH
T ss_pred             eEEEEEe-----cCCceEEEEE-eCCCCcHHHHHHhcC--------cccCH--------------------HHHHHHHHH
Confidence            9999998     7788999999 999999999997643        13444                    457889999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC----------CCCCCCcccccCCCCCCchhhHHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED----------GPNNSSPDSNMDRRQMMIAFDMRC  309 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~----------~~~Y~APE~l~~~~~ys~ksDIWS  309 (667)
                      |+.||.|||++||+||||||+||+++. ++.+||+|||++......          .+.|+|||.+ ....++.++||||
T Consensus       115 i~~~l~~lH~~~i~H~dikp~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~s  192 (269)
T 4hcu_A          115 VCEGMAYLEEACVIHRDLAARNCLVGE-NQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVF-SFSRYSSKSDVWS  192 (269)
T ss_dssp             HHHHHHHHHHTTCCCSCCCGGGEEECG-GGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHH-HHCCCCHHHHHHH
T ss_pred             HHHHHHHHHhCCeecCCcchheEEEcC-CCCEEeccccccccccccccccccCcccccccCCHHHh-cCCCCCchhhhHH
Confidence            999999999999999999999999998 889999999999755322          1359999955 4456899999999


Q ss_pred             HHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCC
Q 005958          310 VGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  388 (667)
Q Consensus       310 LGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kR  388 (667)
                      |||++|+|++ |.+||..            .........+..   ..      ........++++.+||.+||+.||++|
T Consensus       193 lG~~l~~ll~~g~~p~~~------------~~~~~~~~~~~~---~~------~~~~~~~~~~~~~~li~~~l~~~p~~R  251 (269)
T 4hcu_A          193 FGVLMWEVFSEGKIPYEN------------RSNSEVVEDIST---GF------RLYKPRLASTHVYQIMNHCWRERPEDR  251 (269)
T ss_dssp             HHHHHHHHHTTSCCTTTT------------CCHHHHHHHHHT---TC------CCCCCTTSCHHHHHHHHHHTCSSGGGS
T ss_pred             HHHHHHHHhcCCCCCCCC------------CCHHHHHHHHhc---Cc------cCCCCCcCCHHHHHHHHHHccCCcccC
Confidence            9999999999 9999852            222222222221   11      112234568899999999999999999


Q ss_pred             CCHHHHHcC
Q 005958          389 ISCLDALRH  397 (667)
Q Consensus       389 pSa~elL~H  397 (667)
                      ||+.|+++|
T Consensus       252 ps~~~ll~~  260 (269)
T 4hcu_A          252 PAFSRLLRQ  260 (269)
T ss_dssp             CCHHHHHHH
T ss_pred             cCHHHHHHH
Confidence            999999976

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=2.1e-42  Score=363.82  Aligned_cols=256  Identities=16%  Similarity=0.133  Sum_probs=200.1

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCC
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      ....++|++.+.||+|+||    .||+|++..     +++.||||++....     ....+.+|+.+++++      +||
T Consensus         8 ~~~~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l------~hp   72 (311)
T 3ork_A            8 SHLSDRYELGEILGFGGMS----EVHLARDLR-----DHRDVAVKVLRADLARDPSFYLRFRREAQNAAAL------NHP   72 (311)
T ss_dssp             SEETTTEEEEEEEEECSSE----EEEEEEETT-----TTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCC------CCT
T ss_pred             ceecCcEEEEEEEccCCCE----EEEEEEECC-----CCceEEEEEeCccccCCHHHHHHHHHHHHHHHcC------CCC
Confidence            3456899999999999999    999999987     79999999997532     223567888888887      599


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++..... .....|+||| |+++|+|.+++...+         .+++                    ..++.+
T Consensus        73 ~iv~~~~~~~~~~~-~~~~~~lv~e-~~~g~~L~~~l~~~~---------~~~~--------------------~~~~~~  121 (311)
T 3ork_A           73 AIVAVYDTGEAETP-AGPLPYIVME-YVDGVTLRDIVHTEG---------PMTP--------------------KRAIEV  121 (311)
T ss_dssp             TBCCEEEEEEEEET-TEEEEEEEEE-CCCEEEHHHHHHHHC---------SCCH--------------------HHHHHH
T ss_pred             CcceEEEeeeccCC-CCcccEEEEe-cCCCCCHHHHHHhcC---------CCCH--------------------HHHHHH
Confidence            99999999874311 2335699999 999999999998754         4554                    456789


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC------------CCCCCCCcccccCCCCCCch
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE------------DGPNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~------------~~~~Y~APE~l~~~~~ys~k  304 (667)
                      +.||+.||.|||++||+||||||+|||++. ++.+||+|||++.....            +.+.|+|||++. ...++.+
T Consensus       122 ~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~  199 (311)
T 3ork_A          122 IADACQALNFSHQNGIIHRDVKPANIMISA-TNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQAR-GDSVDAR  199 (311)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCCCGGGEEEET-TSCEEECCCSCC------------------CCTTCCHHHHH-TCCCCHH
T ss_pred             HHHHHHHHHHHHHCCCCcCCCCHHHEEEcC-CCCEEEeeccCcccccccccccccccccCcCcccCCHHHhc-CCCCCch
Confidence            999999999999999999999999999998 89999999999976533            247899999655 4568999


Q ss_pred             hhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          305 FDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       305 sDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      +|||||||++|||++|++||...            .......   ........   ........+++++.+||.+||+.|
T Consensus       200 ~Di~slG~~l~~ll~g~~pf~~~------------~~~~~~~---~~~~~~~~---~~~~~~~~~~~~l~~li~~~l~~d  261 (311)
T 3ork_A          200 SDVYSLGCVLYEVLTGEPPFTGD------------SPVSVAY---QHVREDPI---PPSARHEGLSADLDAVVLKALAKN  261 (311)
T ss_dssp             HHHHHHHHHHHHHHHSSCSCCCS------------SHHHHHH---HHHHCCCC---CHHHHSTTCCHHHHHHHHHHTCSS
T ss_pred             HhHHHHHHHHHHHHhCCCCCCCC------------ChHHHHH---HHhcCCCC---CcccccCCCCHHHHHHHHHHHhcC
Confidence            99999999999999999999522            2211111   11111100   011223457899999999999999


Q ss_pred             cCCCCCHHHHHcCCCCCCC
Q 005958          385 PSKRISCLDALRHPFLCGP  403 (667)
Q Consensus       385 P~kRpSa~elL~HPwf~~~  403 (667)
                      |++||++.++|.|+|++..
T Consensus       262 P~~R~~~~~~l~~~l~~~~  280 (311)
T 3ork_A          262 PENRYQTAAEMRADLVRVH  280 (311)
T ss_dssp             GGGSCSSHHHHHHHHHHHH
T ss_pred             HhhChhhHHHHHHHHHHHh
Confidence            9999999999999998653

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=1.4e-41  Score=354.88  Aligned_cols=251  Identities=17%  Similarity=0.213  Sum_probs=200.9

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh------hHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ------AQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~------~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      .++|++.+.||+|+||    .||+|.+..     +++.||+|++....      ....+.+|+++++.++      ||||
T Consensus         4 ~~~y~i~~~lg~G~~g----~V~~~~~~~-----~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~------h~~i   68 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSYG----KVKEVLDSE-----TLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLR------HKNV   68 (305)
T ss_dssp             -CCBCCCCEEEECSSC----EEEEEEBTT-----TCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCC------CTTB
T ss_pred             ccceeEeeEEecCCCe----EEEEEEECC-----CCcEEEEEEeccccccccchhHHHHHHHHHHHHhcC------CCCe
Confidence            4789999999999999    999999987     79999999997632      2356789999999994      9999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      +++++++...   +.+..|+||| |+++ +|.+++....       ...+++                    ..++.++.
T Consensus        69 ~~~~~~~~~~---~~~~~~lv~e-~~~~-~l~~~~~~~~-------~~~~~~--------------------~~~~~~~~  116 (305)
T 2wtk_C           69 IQLVDVLYNE---EKQKMYMVME-YCVC-GMQEMLDSVP-------EKRFPV--------------------CQAHGYFC  116 (305)
T ss_dssp             CCEEEEEECC------CEEEEEE-CCSE-EHHHHHHHST-------TCSCCH--------------------HHHHHHHH
T ss_pred             eEEEEEEEcC---CCCeEEEEeh-hccC-CHHHHHHhCc-------ccccCH--------------------HHHHHHHH
Confidence            9999998633   5678999999 9998 5888887642       113444                    45788999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-----------CCCCCCCcccccCCC-CCCchhh
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-----------DGPNNSSPDSNMDRR-QMMIAFD  306 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-----------~~~~Y~APE~l~~~~-~ys~ksD  306 (667)
                      ||+.||.|||++||+||||||+|||++. ++.+||+|||++.....           +.+.|+|||++.+.. .++.++|
T Consensus       117 qi~~al~~LH~~~i~H~dlkp~NIl~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~D  195 (305)
T 2wtk_C          117 QLIDGLEYLHSQGIVHKDIKPGNLLLTT-GGTLKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVD  195 (305)
T ss_dssp             HHHHHHHHHHHTTEECSCCSGGGEEECT-TCCEEECCCTTCEECCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHH
T ss_pred             HHHHHHHHHHHCCeeecCCCcccEEEcC-CCcEEeeccccccccCccccccccccCCCCCCCcChhhccCcccCCcchhh
Confidence            9999999999999999999999999998 89999999999976542           236799999665433 3478999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          307 MRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       307 IWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      ||||||++|+|++|+.||..            .......+.+.   ...       ......+++++.+||.+||+.||+
T Consensus       196 i~slG~il~~l~~g~~p~~~------------~~~~~~~~~i~---~~~-------~~~~~~~~~~l~~li~~~l~~dp~  253 (305)
T 2wtk_C          196 IWSAGVTLYNITTGLYPFEG------------DNIYKLFENIG---KGS-------YAIPGDCGPPLSDLLKGMLEYEPA  253 (305)
T ss_dssp             HHHHHHHHHHHHHSSCSCCC------------SSHHHHHHHHH---HCC-------CCCCSSSCHHHHHHHHHHTCSSTT
T ss_pred             HHHHHHHHHHHHhCCCCCCC------------chHHHHHHHHh---cCC-------CCCCCccCHHHHHHHHHHccCChh
Confidence            99999999999999999852            22222222221   111       223456789999999999999999


Q ss_pred             CCCCHHHHHcCCCCCCCCC
Q 005958          387 KRISCLDALRHPFLCGPRW  405 (667)
Q Consensus       387 kRpSa~elL~HPwf~~~~~  405 (667)
                      +|||+.|+++||||+....
T Consensus       254 ~Rps~~~ll~~~~~~~~~~  272 (305)
T 2wtk_C          254 KRFSIRQIRQHSWFRKKHP  272 (305)
T ss_dssp             TSCCHHHHHHSHHHHSCCC
T ss_pred             hCCCHHHHhcCcccccCCC
Confidence            9999999999999988654

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=9.9e-42  Score=366.16  Aligned_cols=283  Identities=17%  Similarity=0.199  Sum_probs=207.3

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhcc-----CCCC
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRR-----LMYH  155 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~-----~~~H  155 (667)
                      .+..++|++.+.||+|+||    +||+|++..     +++.||||++.... ..+.+.+|+.+++++.+..     .+.|
T Consensus        15 ~~~~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~   85 (373)
T 1q8y_A           15 PYKDARYILVRKLGWGHFS----TVWLAKDMV-----NNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGA   85 (373)
T ss_dssp             EETTTTEEEEEEEEECSSE----EEEEEEETT-----TTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred             cccCCeEEEEEeeeecCCe----EEEEEEecC-----CCcEEEEEEecCCccchhhhhHHHHHHHHhhcccccchhcccc
Confidence            4566899999999999999    999999987     79999999998543 3456789999999986321     1238


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      |||+++++++.... .....+++||| ++ +++|.+++.....       ..+++                    ..++.
T Consensus        86 ~~i~~~~~~~~~~~-~~~~~~~lv~e-~~-~~~L~~~~~~~~~-------~~~~~--------------------~~~~~  135 (373)
T 1q8y_A           86 NHILKLLDHFNHKG-PNGVHVVMVFE-VL-GENLLALIKKYEH-------RGIPL--------------------IYVKQ  135 (373)
T ss_dssp             TTBCCCCEEEEEEE-TTEEEEEEEEC-CC-CEEHHHHHHHTTT-------SCCCH--------------------HHHHH
T ss_pred             chHHHHHHHhhccC-CCCceEEEEEe-cC-CCCHHHHHHHhhc-------cCCcH--------------------HHHHH
Confidence            99999999997331 13348999999 98 5699999987431       12443                    56788


Q ss_pred             HHHHHHHHHHHHHHC-CCcccCCCCCcEEEcC-----CCCeEEEeeecccccccCC------CCCCCCcccccCCCCCCc
Q 005958          236 LMRDLLIGVNYLHSH-GLAHTELRLENVHISP-----VDRHIKVGILGNAADFYED------GPNNSSPDSNMDRRQMMI  303 (667)
Q Consensus       236 i~~QIl~aL~yLHs~-gIvHrDLKPeNILl~~-----~~~~vKL~DFGlA~~~~~~------~~~Y~APE~l~~~~~ys~  303 (667)
                      ++.||+.||.|||++ ||+||||||+|||++.     ..+.+||+|||+|......      .+.|+|||++.+ ..|+.
T Consensus       136 i~~qi~~aL~~lH~~~~ivH~Dikp~NIll~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~-~~~~~  214 (373)
T 1q8y_A          136 ISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLG-APWGC  214 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHT-CCCCT
T ss_pred             HHHHHHHHHHHHHhcCCEEecCCChHHeEEeccCCCcCcceEEEcccccccccCCCCCCCCCCccccCcHHHhC-CCCCc
Confidence            999999999999998 9999999999999963     1348999999999765433      367999996654 45899


Q ss_pred             hhhHHHHHHHHHHHHhCCCCChhh---------hhhhhhhhccCCChhHHHHHH---HHHhccCCCCCC-----------
Q 005958          304 AFDMRCVGFMMAKMVLRELMDPLI---------FTKFKSFLTKGIDPSCLREFL---LQVLNRNSSSGN-----------  360 (667)
Q Consensus       304 ksDIWSLGviLyemltG~~PF~~~---------~~~~~~~~~~g~~~~~l~~~~---~~~~~~~~~~~~-----------  360 (667)
                      ++|||||||++|||++|++||...         .....+....|..+..+....   ...+........           
T Consensus       215 ~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (373)
T 1q8y_A          215 GADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLED  294 (373)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHH
T ss_pred             hHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhh
Confidence            999999999999999999999732         223333333444433221110   000000000000           


Q ss_pred             ---CCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          361 ---TGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       361 ---~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                         .........++++++||.+||+.||++|||++|+|+||||++..
T Consensus       295 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~  341 (373)
T 1q8y_A          295 VLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTL  341 (373)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTCGGGTTCT
T ss_pred             hhhhcccCCcchHHHHHHHHHHHhccCccccCCHHHHhhChhhhccc
Confidence               00112234567899999999999999999999999999999854

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=7e-42  Score=364.23  Aligned_cols=264  Identities=14%  Similarity=0.226  Sum_probs=203.4

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhH-------------------HHHHHHHH
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQ-------------------RRGRRAIE  142 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~-------------------~~~~rEi~  142 (667)
                      ....++|++.+.||+|+||    .||+|.+ .      ++.||||++......                   +.+.+|+.
T Consensus        27 ~~~~~~y~~~~~lg~G~~g----~V~~~~~-~------~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~   95 (348)
T 2pml_X           27 DKYINDYRIIRTLNQGKFN----KIILCEK-D------NKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQ   95 (348)
T ss_dssp             CEEETTEEEEEEEECCSSC----CEEEEEE-T------TEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHH
T ss_pred             ccccCceEEEEEEcCCCCe----EEEEEEc-C------CceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHH
Confidence            3556899999999999999    9999998 3      799999999764322                   67899999


Q ss_pred             HHHHHhhccCCCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCC
Q 005958          143 VLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIG  222 (667)
Q Consensus       143 iL~~L~~~~~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~  222 (667)
                      ++++++      ||||+++++++.     +.+.+|+||| |+++|+|.+++.....+.. .....++             
T Consensus        96 ~l~~l~------h~~i~~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~~~l~~-~~~~~~~-------------  149 (348)
T 2pml_X           96 IITDIK------NEYCLTCEGIIT-----NYDEVYIIYE-YMENDSILKFDEYFFVLDK-NYTCFIP-------------  149 (348)
T ss_dssp             HHTTCC------CTTBCCCSEEEE-----SSSEEEEEEE-CCTTCBSSEESSSEESSCS-SSCCCCC-------------
T ss_pred             HHHhCC------CCCcceEEEEEe-----eCCeEEEEEe-ccCCCcHHHHHHHhhhhhh-ccccCCC-------------
Confidence            999994      999999999999     7789999999 9999999988432110000 0011334             


Q ss_pred             CCCccccHHHHHHHHHHHHHHHHHHHH-CCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-------CCCCCCCccc
Q 005958          223 GPAASRQLRLIRLLMRDLLIGVNYLHS-HGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-------DGPNNSSPDS  294 (667)
Q Consensus       223 ~~~~~~~~~~i~~i~~QIl~aL~yLHs-~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-------~~~~Y~APE~  294 (667)
                             ...++.++.||+.||.|||+ +||+||||||+|||++. ++.+||+|||++.....       +.+.|+|||+
T Consensus       150 -------~~~~~~i~~qi~~~l~~lH~~~~i~H~dl~p~Nil~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~  221 (348)
T 2pml_X          150 -------IQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMDK-NGRVKLSDFGESEYMVDKKIKGSRGTYEFMPPEF  221 (348)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHHTSCEECCCCCGGGEEECT-TSCEEECCCTTCEECBTTEECSSCSCGGGCCGGG
T ss_pred             -------HHHHHHHHHHHHHHHHHHhccCCEeecCCChHhEEEcC-CCcEEEeccccccccccccccCCCCCcCccCchh
Confidence                   45678899999999999999 99999999999999998 89999999999986533       2367999997


Q ss_pred             ccCCCCCCc-hhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCC------------C
Q 005958          295 NMDRRQMMI-AFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGN------------T  361 (667)
Q Consensus       295 l~~~~~ys~-ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~------------~  361 (667)
                      +.+...++. ++|||||||++|||++|.+||....           ....+...   +.........            .
T Consensus       222 ~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-----------~~~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~  287 (348)
T 2pml_X          222 FSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKI-----------SLVELFNN---IRTKNIEYPLDRNHFLYPLTNKK  287 (348)
T ss_dssp             GSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSS-----------CSHHHHHH---HTSCCCCCCCSSSSSTTTTCC--
T ss_pred             hcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCC-----------cHHHHHHH---HhccCcCCccchhhhhccccccc
Confidence            766646766 9999999999999999999996221           11111111   1111111000            0


Q ss_pred             CcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          362 GFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       362 ~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      .......+++++.+||.+||+.||++|||+.|+|+||||++..
T Consensus       288 ~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~hp~f~~~~  330 (348)
T 2pml_X          288 STCSNNFLSNEDIDFLKLFLRKNPAERITSEDALKHEWLADTN  330 (348)
T ss_dssp             ------CCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGTTCC
T ss_pred             cccchhhcCHHHHHHHHHHccCChhhCCCHHHHhcCccccCCC
Confidence            0011256789999999999999999999999999999999876

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.8e-42  Score=360.27  Aligned_cols=250  Identities=17%  Similarity=0.165  Sum_probs=195.1

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh--------HHHHHHHHHHHHHHhhccC
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA--------QRRGRRAIEVLKKLVRRRL  152 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~--------~~~~~rEi~iL~~L~~~~~  152 (667)
                      .....++|++.+.||+|+||    .||+|++..     +++.||||++.....        .....+|+.+++++.  ..
T Consensus        26 ~~~~~~~y~~~~~lg~G~~g----~Vy~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~--~~   94 (312)
T 2iwi_A           26 REAFEAEYRLGPLLGKGGFG----TVFAGHRLT-----DRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVG--AG   94 (312)
T ss_dssp             -------CEEEEEEEEETTE----EEEEEECTT-----TCCEEEEEECCSTTTC--------CCCCHHHHHHHHHH--SS
T ss_pred             hhhhhhceEEeeEEEcCCCE----EEEEEEEcc-----CCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhc--cc
Confidence            34456889999999999999    999999987     789999999975422        122367999999983  11


Q ss_pred             CCCCcceEEEEEEEecccCCCCeEEEEEccC-CCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHH
Q 005958          153 MYHSYSMQVHGYVSSHTTSGRSLFTLVHGQY-HGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLR  231 (667)
Q Consensus       153 ~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~-~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~  231 (667)
                      ..||||+++++++.     ..+..++||| + +.+++|.+++...+         .+++                    .
T Consensus        95 ~~h~~i~~~~~~~~-----~~~~~~~v~e-~~~~~~~L~~~l~~~~---------~~~~--------------------~  139 (312)
T 2iwi_A           95 GGHPGVIRLLDWFE-----TQEGFMLVLE-RPLPAQDLFDYITEKG---------PLGE--------------------G  139 (312)
T ss_dssp             CCCSSBCCEEEEC----------CEEEEE-CCSSEEEHHHHHHHHC---------SCCH--------------------H
T ss_pred             CCCCCeeeEEEEEe-----cCCeEEEEEE-ecCCCCCHHHHHHhcC---------CCCH--------------------H
Confidence            23999999999998     6788999999 6 78889999998754         4554                    4


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-------CCCCCCcccccCCCCCCch
Q 005958          232 LIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-------GPNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       232 ~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-------~~~Y~APE~l~~~~~ys~k  304 (667)
                      .++.++.||+.||.|||++||+||||||+||+++..++.+||+|||++......       .+.|+|||++.+...++.+
T Consensus       140 ~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  219 (312)
T 2iwi_A          140 PSRCFFGQVVAAIQHCHSRGVVHRDIKDENILIDLRRGCAKLIDFGSGALLHDEPYTDFDGTRVYSPPEWISRHQYHALP  219 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTEECCCCSGGGEEEETTTTEEEECCCSSCEECCSSCBCCCCSCTTTSCHHHHHHSCBCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCeeecCCChhhEEEeCCCCeEEEEEcchhhhcccCcccccCCcccccCceeeecCCCCCcc
Confidence            578899999999999999999999999999999943899999999999866443       3679999976665555679


Q ss_pred             hhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          305 FDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       305 sDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      +|||||||++|+|++|+.||.....                 ...    .       .......+++++++||.+||+.|
T Consensus       220 ~Di~slG~il~~l~~g~~pf~~~~~-----------------~~~----~-------~~~~~~~~~~~~~~li~~~l~~~  271 (312)
T 2iwi_A          220 ATVWSLGILLYDMVCGDIPFERDQE-----------------ILE----A-------ELHFPAHVSPDCCALIRRCLAPK  271 (312)
T ss_dssp             HHHHHHHHHHHHHHHSSCSCCSHHH-----------------HHH----T-------CCCCCTTSCHHHHHHHHHHTCSS
T ss_pred             chHHHHHHHHHHHHHCCCCCCChHH-----------------Hhh----h-------ccCCcccCCHHHHHHHHHHccCC
Confidence            9999999999999999999853211                 110    0       11223467889999999999999


Q ss_pred             cCCCCCHHHHHcCCCCCCCC
Q 005958          385 PSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       385 P~kRpSa~elL~HPwf~~~~  404 (667)
                      |++|||++|+++||||+...
T Consensus       272 p~~Rps~~e~l~~~~~~~~~  291 (312)
T 2iwi_A          272 PSSRPSLEEILLDPWMQTPA  291 (312)
T ss_dssp             TTTSCCHHHHHHSTTTCC--
T ss_pred             hhhCcCHHHHhcChhhcCch
Confidence            99999999999999999865

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=7.3e-42  Score=369.35  Aligned_cols=261  Identities=16%  Similarity=0.179  Sum_probs=202.7

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcc---hhhHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS---VQAQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~---~~~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      ..+..++|++++.||+|+||    +||+|++....+..+++.||||++..   ......+.+|+.++++++      |||
T Consensus        66 ~~~~~~~~~~~~~LG~G~fg----~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~------hpn  135 (367)
T 3l9p_A           66 KEVPRKNITLIRGLGHGAFG----EVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFN------HQN  135 (367)
T ss_dssp             CBCCGGGEEEEEECCCCSSS----CEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCC------CTT
T ss_pred             hhcCHhHeEEeeEeeeCCCE----EEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCC------CCC
Confidence            34566899999999999999    99999966433334788999999864   233456789999999994      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     ..+..|+||| |+++|+|.+++...+....                      ....++...++.++
T Consensus       136 Iv~~~~~~~-----~~~~~~lv~e-~~~~g~L~~~l~~~~~~~~----------------------~~~~~~~~~~~~i~  187 (367)
T 3l9p_A          136 IVRCIGVSL-----QSLPRFILLE-LMAGGDLKSFLRETRPRPS----------------------QPSSLAMLDLLHVA  187 (367)
T ss_dssp             BCCEEEEEC-----SSSSCEEEEE-CCTTEEHHHHHHHHSCCSS----------------------SCCCCCHHHHHHHH
T ss_pred             CCeEEEEEe-----cCCCCEEEEE-eCCCCCHHHHHHhhccccC----------------------ccccccHHHHHHHH
Confidence            999999998     7778899999 9999999999987542111                      11123346688899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCC--CCeEEEeeecccccccC-----------CCCCCCCcccccCCCCCCch
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPV--DRHIKVGILGNAADFYE-----------DGPNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~--~~~vKL~DFGlA~~~~~-----------~~~~Y~APE~l~~~~~ys~k  304 (667)
                      .||+.||.|||++||+||||||+|||++.+  +..+||+|||+|+....           ..+.|+|||++. ...|+.+
T Consensus       188 ~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~  266 (367)
T 3l9p_A          188 RDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFM-EGIFTSK  266 (367)
T ss_dssp             HHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHH-HCCCCHH
T ss_pred             HHHHHHHHHHHhCCeeCCCCChhhEEEecCCCCceEEECCCccccccccccccccCCCcCCcccEECHHHhc-CCCCCcH
Confidence            999999999999999999999999999851  34699999999974321           125799999654 4569999


Q ss_pred             hhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhc
Q 005958          305 FDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLAT  383 (667)
Q Consensus       305 sDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~  383 (667)
                      +|||||||++|||++ |.+||..            .....+...+..   ..      .......+++++.+||.+||+.
T Consensus       267 ~DvwslG~il~ellt~g~~pf~~------------~~~~~~~~~i~~---~~------~~~~~~~~~~~l~~li~~~l~~  325 (367)
T 3l9p_A          267 TDTWSFGVLLWEIFSLGYMPYPS------------KSNQEVLEFVTS---GG------RMDPPKNCPGPVYRIMTQCWQH  325 (367)
T ss_dssp             HHHHHHHHHHHHHHTTSCCSSTT------------CCHHHHHHHHHT---TC------CCCCCTTCCHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCC------------CCHHHHHHHHHc---CC------CCCCCccCCHHHHHHHHHHcCC
Confidence            999999999999998 9999852            223333332221   11      1223456788999999999999


Q ss_pred             CcCCCCCHHHHHcCCCCC
Q 005958          384 KPSKRISCLDALRHPFLC  401 (667)
Q Consensus       384 DP~kRpSa~elL~HPwf~  401 (667)
                      ||++|||+.++++|.++.
T Consensus       326 dP~~Rps~~eil~~l~~~  343 (367)
T 3l9p_A          326 QPEDRPNFAIILERIEYC  343 (367)
T ss_dssp             SGGGSCCHHHHHHHHHHH
T ss_pred             CHhHCcCHHHHHHHHHHH
Confidence            999999999999987653

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=2.4e-41  Score=353.38  Aligned_cols=251  Identities=15%  Similarity=0.185  Sum_probs=199.4

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcc-----hhhHHHHHHHHHHHHHHhhccCCCCC
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS-----VQAQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~-----~~~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      .+..++|++.+.||+|+||    .||+|++..     +++.||+|++..     ....+.+.+|+.+++.++      ||
T Consensus         7 ~~~~~~y~i~~~lg~G~~g----~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~------hp   71 (294)
T 4eqm_A            7 KIINERYKIVDKLGGGGMS----TVYLAEDTI-----LNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLS------HQ   71 (294)
T ss_dssp             SCEETTEEEEEEEEEETTE----EEEEEEETT-----TCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCC------BT
T ss_pred             hHhhccEEEEEEEccCCCE----EEEEEEECC-----CCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCC------CC
Confidence            3445889999999999999    999999987     799999999854     223356789999999994      99


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++.     ..+.+|+||| |+++|+|.+++...+         .+++                    ..++.+
T Consensus        72 ~iv~~~~~~~-----~~~~~~lv~e-~~~g~~L~~~l~~~~---------~~~~--------------------~~~~~~  116 (294)
T 4eqm_A           72 NIVSMIDVDE-----EDDCYYLVME-YIEGPTLSEYIESHG---------PLSV--------------------DTAINF  116 (294)
T ss_dssp             TBCCEEEEEE-----CSSEEEEEEE-CCCSCBHHHHHHHHC---------SCCH--------------------HHHHHH
T ss_pred             CCceEEEeee-----eCCeEEEEEe-CCCCCCHHHHHHhcC---------CCCH--------------------HHHHHH
Confidence            9999999998     8889999999 999999999998754         4554                    457789


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC----------CCCCCCCcccccCCCCCCchhh
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE----------DGPNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~----------~~~~Y~APE~l~~~~~ys~ksD  306 (667)
                      +.||+.||.|||++||+||||||+|||++. ++.+||+|||++.....          +.+.|+|||.+.+ ..++.++|
T Consensus       117 ~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~D  194 (294)
T 4eqm_A          117 TNQILDGIKHAHDMRIVHRDIKPQNILIDS-NKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKG-EATDECTD  194 (294)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCCCGGGEEECT-TSCEEECCCSSSTTC-------------CCSSCCHHHHHT-CCCCTTHH
T ss_pred             HHHHHHHHHHHHHCCcccCCCCHHHEEECC-CCCEEEEeCCCccccccccccccCccccCccccCHhHhcC-CCCCchHh
Confidence            999999999999999999999999999998 89999999999976543          2478999996554 56899999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          307 MRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       307 IWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      ||||||++|+|++|++||...            .....   .........+  .........+++.+.++|.+||+.||+
T Consensus       195 i~slG~~l~~ll~g~~pf~~~------------~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~l~~li~~~l~~dp~  257 (294)
T 4eqm_A          195 IYSIGIVLYEMLVGEPPFNGE------------TAVSI---AIKHIQDSVP--NVTTDVRKDIPQSLSNVILRATEKDKA  257 (294)
T ss_dssp             HHHHHHHHHHHHHSSCSSCSS------------CHHHH---HHHHHSSCCC--CHHHHSCTTSCHHHHHHHHHHSCSSGG
T ss_pred             HHHHHHHHHHHHhCCCCCCCC------------ChHHH---HHHHhhccCC--CcchhcccCCCHHHHHHHHHHhcCCHh
Confidence            999999999999999999632            11111   1111111111  001123356788999999999999999


Q ss_pred             CCCCHHHHHcCCCCC
Q 005958          387 KRISCLDALRHPFLC  401 (667)
Q Consensus       387 kRpSa~elL~HPwf~  401 (667)
                      +||+..+.+.+.|..
T Consensus       258 ~R~~~~~~l~~~l~~  272 (294)
T 4eqm_A          258 NRYKTIQEMKDDLSS  272 (294)
T ss_dssp             GSCSSHHHHHHHHHT
T ss_pred             HccccHHHHHHHHHH
Confidence            999666666665543

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=1.7e-41  Score=357.91  Aligned_cols=263  Identities=17%  Similarity=0.189  Sum_probs=185.7

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCC---cEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCC
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHN---TKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLM  153 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg---~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~  153 (667)
                      ..+..++|++.+.||+|+||    .||+|++..     ++   ..||||++...    ...+.+.+|++++++++     
T Consensus        18 ~~i~~~~y~~~~~lg~G~~g----~Vy~~~~~~-----~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-----   83 (323)
T 3qup_A           18 VLIPEQQFTLGRMLGKGEFG----SVREAQLKQ-----EDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFD-----   83 (323)
T ss_dssp             TBCC---CEEEEEEEEETTE----EEEEEEC------------CEEEEEEC------CHHHHHHHHHHHHHTTCC-----
T ss_pred             cccChhHeEEeceecccCCe----EEEEEEEcc-----cCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCC-----
Confidence            34566899999999999999    999999886     34   38999998753    23456789999999994     


Q ss_pred             CCCcceEEEEEEEecccC-CCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHH
Q 005958          154 YHSYSMQVHGYVSSHTTS-GRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRL  232 (667)
Q Consensus       154 ~HpnIv~l~~~~~~~~~~-~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~  232 (667)
                       ||||+++++++...... .....++||| |+.+|+|.+++.......   ....++                    ...
T Consensus        84 -h~~iv~~~~~~~~~~~~~~~~~~~~v~e-~~~~~~L~~~l~~~~~~~---~~~~~~--------------------~~~  138 (323)
T 3qup_A           84 -HPHVAKLVGVSLRSRAKGRLPIPMVILP-FMKHGDLHAFLLASRIGE---NPFNLP--------------------LQT  138 (323)
T ss_dssp             -CTTBCCCCEEEECC-------CEEEEEE-CCTTCBHHHHHHHHHC------CCCCC--------------------HHH
T ss_pred             -CCceehhhceeeccccccCCCccEEEEE-eccCCcHHHHHHhhhccc---cccccC--------------------HHH
Confidence             99999999999832100 1112499999 999999999997642100   001233                    456


Q ss_pred             HHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-----------CCCCCcccccCCCCC
Q 005958          233 IRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-----------PNNSSPDSNMDRRQM  301 (667)
Q Consensus       233 i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-----------~~Y~APE~l~~~~~y  301 (667)
                      ++.++.||+.||.|||++||+||||||+|||++. ++.+||+|||+|+......           +.|+|||.+. ...|
T Consensus       139 ~~~i~~qi~~al~~LH~~~ivH~Dikp~NIli~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~  216 (323)
T 3qup_A          139 LVRFMVDIACGMEYLSSRNFIHRDLAARNCMLAE-DMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLA-DNLY  216 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECT-TSCEEECCCCC-----------------CCGGGCCHHHHH-HCCC
T ss_pred             HHHHHHHHHHHHHHHHcCCcccCCCCcceEEEcC-CCCEEEeeccccccccccccccccccccCcccccCchhhc-CCCC
Confidence            7889999999999999999999999999999998 8999999999997654322           4699999554 4569


Q ss_pred             CchhhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHh
Q 005958          302 MIAFDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLL  380 (667)
Q Consensus       302 s~ksDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~  380 (667)
                      +.++|||||||++|||++ |.+||..            .........+.   ...      .......+++++.+||.+|
T Consensus       217 ~~~~Di~slG~il~ell~~g~~p~~~------------~~~~~~~~~~~---~~~------~~~~~~~~~~~l~~li~~~  275 (323)
T 3qup_A          217 TVHSDVWAFGVTMWEIMTRGQTPYAG------------IENAEIYNYLI---GGN------RLKQPPECMEEVYDLMYQC  275 (323)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCCTTTT------------CCGGGHHHHHH---TTC------CCCCCTTCCHHHHHHHHHT
T ss_pred             CCccchhhHHHHHHHHHhCCCCCccc------------cChHHHHHHHh---cCC------CCCCCCccCHHHHHHHHHH
Confidence            999999999999999999 9999853            22222222221   111      1223456789999999999


Q ss_pred             hhcCcCCCCC-------HHHHHcCCCCCCCCC
Q 005958          381 LATKPSKRIS-------CLDALRHPFLCGPRW  405 (667)
Q Consensus       381 L~~DP~kRpS-------a~elL~HPwf~~~~~  405 (667)
                      |+.||++|||       .+++++|||+.....
T Consensus       276 l~~dp~~Rps~~~l~~~l~~~l~~~~~~~~~~  307 (323)
T 3qup_A          276 WSADPKQRPSFTCLRMELENILGHLSVLSTSQ  307 (323)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHHHHC--------
T ss_pred             ccCChhhCcCHHHHHHHHHHHHHHhhhcCCCC
Confidence            9999999999       678889999988653

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=2.4e-41  Score=354.21  Aligned_cols=274  Identities=19%  Similarity=0.187  Sum_probs=206.5

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      ...+..++|++.+.||+|+||    .||+|.+.......+++.||||++....   ..+.+.+|+++++.++      ||
T Consensus        17 ~~~~~~~~y~~~~~lg~G~~g----~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~------hp   86 (314)
T 2ivs_A           17 KWEFPRKNLVLGKTLGEGEFG----KVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVN------HP   86 (314)
T ss_dssp             TTBCCGGGEEEEEEEEECSSS----EEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCC------CT
T ss_pred             ccccchhheeeeeeecccCCe----eEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCC------CC
Confidence            445667899999999999999    9999998643333367899999997532   3356788999999994      99


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++.     ..+..++||| |+++|+|.+++........-.    +..... +............++...++.+
T Consensus        87 ~iv~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~i  155 (314)
T 2ivs_A           87 HVIKLYGACS-----QDGPLLLIVE-YAKYGSLRGFLRESRKVGPGY----LGSGGS-RNSSSLDHPDERALTMGDLISF  155 (314)
T ss_dssp             TBCCEEEEEC-----SSSSCEEEEE-CCTTCBHHHHHHHTTTSTTEE----C-----------------CEECHHHHHHH
T ss_pred             ceeeEEEEEe-----cCCceEEEEe-ecCCCCHHHHHHHHhhccCCc----cccccc-ccccccccccccCcCHHHHHHH
Confidence            9999999998     7788999999 999999999998764211100    000000 0000000011223556788999


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-----------CCCCCcccccCCCCCCchh
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-----------PNNSSPDSNMDRRQMMIAF  305 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-----------~~Y~APE~l~~~~~ys~ks  305 (667)
                      +.||+.||.|||++||+||||||+|||++. ++.+||+|||++.......           +.|+|||.+. ...++.++
T Consensus       156 ~~qi~~~l~~lH~~~ivH~dikp~NIli~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~  233 (314)
T 2ivs_A          156 AWQISQGMQYLAEMKLVHRDLAARNILVAE-GRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLF-DHIYTTQS  233 (314)
T ss_dssp             HHHHHHHHHHHHHTTEECCCCSGGGEEEET-TTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHH-HCEECHHH
T ss_pred             HHHHHHHHHHHHHCCCcccccchheEEEcC-CCCEEEccccccccccccccceeccCCCCcccccChhhhc-CCCcCchh
Confidence            999999999999999999999999999998 8999999999997654321           4599999654 45589999


Q ss_pred             hHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          306 DMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       306 DIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      |||||||++|||++ |.+||.            +.....+...+....         .......+++++.+||.+||+.|
T Consensus       234 Di~slG~il~el~t~g~~p~~------------~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~li~~~l~~d  292 (314)
T 2ivs_A          234 DVWSFGVLLWEIVTLGGNPYP------------GIPPERLFNLLKTGH---------RMERPDNCSEEMYRLMLQCWKQE  292 (314)
T ss_dssp             HHHHHHHHHHHHHTTSCCSST------------TCCGGGHHHHHHTTC---------CCCCCTTCCHHHHHHHHHHTCSS
T ss_pred             hHHHHHHHHHHHHhCCCCCCC------------CCCHHHHHHHhhcCC---------cCCCCccCCHHHHHHHHHHccCC
Confidence            99999999999999 999985            333333333332211         12234567899999999999999


Q ss_pred             cCCCCCHHHHHcC
Q 005958          385 PSKRISCLDALRH  397 (667)
Q Consensus       385 P~kRpSa~elL~H  397 (667)
                      |++|||+.++++|
T Consensus       293 p~~Rps~~~l~~~  305 (314)
T 2ivs_A          293 PDKRPVFADISKD  305 (314)
T ss_dssp             GGGSCCHHHHHHH
T ss_pred             hhhCcCHHHHHHH
Confidence            9999999999875

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=6.7e-41  Score=353.21  Aligned_cols=253  Identities=18%  Similarity=0.202  Sum_probs=196.7

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCC
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMY  154 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~  154 (667)
                      ....+..++|++.+.||+|+||    +||+|++.       ++.||||++...    ...+.+.+|++++++++      
T Consensus        30 ~~~~i~~~~y~i~~~lG~G~~g----~V~~~~~~-------~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~------   92 (309)
T 3p86_A           30 DDMDIPWCDLNIKEKIGAGSFG----TVHRAEWH-------GSDVAVKILMEQDFHAERVNEFLREVAIMKRLR------   92 (309)
T ss_dssp             --CBCCGGGEEEEEEEEECSSE----EEEEEEET-------TEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCC------
T ss_pred             ccccCChhHceeeeEeecCCCe----EEEEEEEC-------CCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCC------
Confidence            4556777899999999999999    99999764       688999998753    22345789999999995      


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      ||||+++++++.     ..+.+++||| |+++|+|.+++......      ..+++                    ..+.
T Consensus        93 hp~iv~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~~~------~~~~~--------------------~~~~  140 (309)
T 3p86_A           93 HPNIVLFMGAVT-----QPPNLSIVTE-YLSRGSLYRLLHKSGAR------EQLDE--------------------RRRL  140 (309)
T ss_dssp             CTTBCCEEEEEC-----STTCCEEEEE-CCTTCBHHHHHHSTTHH------HHSCH--------------------HHHH
T ss_pred             CCCEeeEEEEEE-----ECCceEEEEe-cCCCCcHHHHHhhcCCC------CCCCH--------------------HHHH
Confidence            999999999998     7778999999 99999999999864310      02443                    4578


Q ss_pred             HHHHHHHHHHHHHHHCC--CcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCc
Q 005958          235 LLMRDLLIGVNYLHSHG--LAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMI  303 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~g--IvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~  303 (667)
                      .++.||+.||+|||++|  |+||||||+|||++. ++.+||+|||+++....         +.+.|+|||++. ...++.
T Consensus       141 ~i~~qi~~aL~~LH~~~~~ivH~Dikp~NIll~~-~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~  218 (309)
T 3p86_A          141 SMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDK-KYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLR-DEPSNE  218 (309)
T ss_dssp             HHHHHHHHHHHHHHTSSSCCCCTTCCGGGEEECT-TCCEEECCCC-----------------CCTTSCHHHHT-TCCCCT
T ss_pred             HHHHHHHHHHHHHHcCCCCEECCCCChhhEEEeC-CCcEEECCCCCCccccccccccccCCCCccccChhhhc-CCCCCc
Confidence            89999999999999999  999999999999998 89999999999975432         237899999654 556899


Q ss_pred             hhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhc
Q 005958          304 AFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLAT  383 (667)
Q Consensus       304 ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~  383 (667)
                      ++|||||||++|||++|+.||..            .........+..   .     .........+++++.+||.+||+.
T Consensus       219 ~~DiwslG~il~elltg~~Pf~~------------~~~~~~~~~~~~---~-----~~~~~~~~~~~~~l~~li~~~l~~  278 (309)
T 3p86_A          219 KSDVYSFGVILWELATLQQPWGN------------LNPAQVVAAVGF---K-----CKRLEIPRNLNPQVAAIIEGCWTN  278 (309)
T ss_dssp             THHHHHHHHHHHHHHHCCCTTTT------------SCHHHHHHHHHH---S-----CCCCCCCTTSCHHHHHHHHHHTCS
T ss_pred             hhhHHHHHHHHHHHHhCCCCCCC------------CCHHHHHHHHHh---c-----CCCCCCCccCCHHHHHHHHHHccC
Confidence            99999999999999999999852            222222222111   1     011234457889999999999999


Q ss_pred             CcCCCCCHHHHHc--CCCCCC
Q 005958          384 KPSKRISCLDALR--HPFLCG  402 (667)
Q Consensus       384 DP~kRpSa~elL~--HPwf~~  402 (667)
                      ||++|||++++++  +++++.
T Consensus       279 dP~~Rps~~~ll~~L~~~~~~  299 (309)
T 3p86_A          279 EPWKRPSFATIMDLLRPLIKS  299 (309)
T ss_dssp             SGGGSCCHHHHHHHHHHHHC-
T ss_pred             ChhhCcCHHHHHHHHHHHHHh
Confidence            9999999999987  444443

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=6.8e-41  Score=352.00  Aligned_cols=255  Identities=20%  Similarity=0.266  Sum_probs=201.5

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCC
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMY  154 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~  154 (667)
                      +...+..++|++.+.||+|+||    .||+|.+.      +++.||||++...    ...+.+.+|+.+++++++    .
T Consensus        21 ~~~~~~~~~y~~~~~lg~G~~g----~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~----~   86 (313)
T 3cek_A           21 QSMSVKGRIYSILKQIGSGGSS----KVFQVLNE------KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQ----H   86 (313)
T ss_dssp             CEEEETTEEEEEEEEEECCSSE----EEEEEECT------TCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGG----G
T ss_pred             eeeeeccceEEEEEEecCCCCE----EEEEEEcC------CCcEEEEEEeccccccccchHHHHHHHHHHHhccc----c
Confidence            4556667889999999999999    99999986      4889999999642    233567899999999972    2


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      ||||+++++++.     ..+.+|+||| +.++ +|.+++...+         .+++                    ..++
T Consensus        87 ~~~iv~~~~~~~-----~~~~~~lv~e-~~~~-~L~~~l~~~~---------~~~~--------------------~~~~  130 (313)
T 3cek_A           87 SDKIIRLYDYEI-----TDQYIYMVME-CGNI-DLNSWLKKKK---------SIDP--------------------WERK  130 (313)
T ss_dssp             CTTBCCEEEEEE-----CSSEEEEEEC-CCSE-EHHHHHHHCS---------SCCH--------------------HHHH
T ss_pred             CCceEEEEEEee-----cCCEEEEEEe-cCCC-cHHHHHHhcC---------CCCH--------------------HHHH
Confidence            699999999998     7789999999 7665 9999998754         4454                    4567


Q ss_pred             HHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-----------CCCCCCCcccccC------
Q 005958          235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-----------DGPNNSSPDSNMD------  297 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-----------~~~~Y~APE~l~~------  297 (667)
                      .++.||+.||.|||++||+||||||+|||++  ++.+||+|||++.....           +.+.|+|||++.+      
T Consensus       131 ~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~--~~~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  208 (313)
T 3cek_A          131 SYWKNMLEAVHTIHQHGIVHSDLKPANFLIV--DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRE  208 (313)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE--TTEEEECCCSSSCC--------------CCGGGCCHHHHTTCC----
T ss_pred             HHHHHHHHHHHHHHHCCceecCCCcccEEEE--CCeEEEeeccccccccCccccccccCCCCCCCcCCHHHHhhcccccc
Confidence            8999999999999999999999999999997  58999999999976533           2367999997654      


Q ss_pred             ----CCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHH
Q 005958          298 ----RRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAG  373 (667)
Q Consensus       298 ----~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~  373 (667)
                          ...++.++|||||||++|+|++|+.||....           ...   ..+.......     .........++++
T Consensus       209 ~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~-----------~~~---~~~~~~~~~~-----~~~~~~~~~~~~l  269 (313)
T 3cek_A          209 NGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQII-----------NQI---SKLHAIIDPN-----HEIEFPDIPEKDL  269 (313)
T ss_dssp             ------CCCHHHHHHHHHHHHHHHHHSSCTTTTCC-----------SHH---HHHHHHHCTT-----SCCCCCCCSCHHH
T ss_pred             cccccccCCchHHHHHHHHHHHHHHhCCCchhhHH-----------HHH---HHHHHHHhcc-----cccCCcccchHHH
Confidence                2468999999999999999999999985321           110   1111111111     1122334557899


Q ss_pred             HHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          374 WNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       374 ~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      .+||.+||+.||++|||+.|+|+||||+...
T Consensus       270 ~~li~~~l~~dp~~Rps~~ell~h~~~~~~~  300 (313)
T 3cek_A          270 QDVLKCCLKRDPKQRISIPELLAHPYVQIQT  300 (313)
T ss_dssp             HHHHHHHTCSSTTTSCCHHHHHTSHHHHCC-
T ss_pred             HHHHHHHccCCcccCcCHHHHhcCccccCCC
Confidence            9999999999999999999999999998755

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=3.7e-41  Score=353.55  Aligned_cols=246  Identities=18%  Similarity=0.218  Sum_probs=199.5

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcc--hhhHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS--VQAQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~--~~~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      ..+..++|++.+.||+|+||    +||+|.+..     +++.||+|++..  ....+.+.+|++++++++      ||||
T Consensus         5 ~~~~~~~~~~~~~lG~G~~g----~V~~~~~~~-----~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~------hp~i   69 (310)
T 3s95_A            5 RIFRPSDLIHGEVLGKGCFG----QAIKVTHRE-----TGEVMVMKELIRFDEETQRTFLKEVKVMRCLE------HPNV   69 (310)
T ss_dssp             EEECGGGEEEEEEEECCSSE----EEEEEEETT-----TCCEEEEEEESCCCHHHHHHHHHHHHHHTTCC------CTTB
T ss_pred             eeeChhHeeccceecCCCCE----EEEEEEECC-----CCcEEEEEEeccCCHHHHHHHHHHHHHHHhCC------CcCc
Confidence            34667899999999999999    999999998     799999999865  234456789999999994      9999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      +++++++.     +.+..++||| |+++|+|.+++....        ..+++                    ..+..++.
T Consensus        70 v~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~--------~~~~~--------------------~~~~~i~~  115 (310)
T 3s95_A           70 LKFIGVLY-----KDKRLNFITE-YIKGGTLRGIIKSMD--------SQYPW--------------------SQRVSFAK  115 (310)
T ss_dssp             CCEEEEEE-----ETTEEEEEEE-CCTTCBHHHHHHHCC--------TTSCH--------------------HHHHHHHH
T ss_pred             ccEEEEEe-----cCCeeEEEEE-ecCCCcHHHHHHhcc--------CCCCH--------------------HHHHHHHH
Confidence            99999998     7789999999 999999999998743        13444                    45778999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-----------------------CCCCCCCcccc
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-----------------------DGPNNSSPDSN  295 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-----------------------~~~~Y~APE~l  295 (667)
                      ||+.||+|||++||+||||||+|||++. ++.+||+|||++.....                       +.+.|+|||++
T Consensus       116 qi~~al~~lH~~~ivH~dlkp~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  194 (310)
T 3s95_A          116 DIASGMAYLHSMNIIHRDLNSHNCLVRE-NKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMI  194 (310)
T ss_dssp             HHHHHHHHHHHTTEECSCCSTTSEEECT-TSCEEECCCTTCEECC--------------------CCCCSCGGGCCHHHH
T ss_pred             HHHHHHHHHHhCCccCCCCCcCeEEECC-CCCEEEeecccceecccccccccccccccccccccccccCCCcceeCHHHh
Confidence            9999999999999999999999999998 89999999999976432                       23569999955


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHH
Q 005958          296 MDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWN  375 (667)
Q Consensus       296 ~~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~d  375 (667)
                       ....++.++|||||||++|||++|..||+........      ............             ..+.+++++.+
T Consensus       195 -~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~------~~~~~~~~~~~~-------------~~~~~~~~l~~  254 (310)
T 3s95_A          195 -NGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMD------FGLNVRGFLDRY-------------CPPNCPPSFFP  254 (310)
T ss_dssp             -TTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTT------SSBCHHHHHHHT-------------CCTTCCTTHHH
T ss_pred             -cCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHH------Hhhhhhcccccc-------------CCCCCCHHHHH
Confidence             4566899999999999999999999998643211110      011111221111             12456778999


Q ss_pred             HHHHhhhcCcCCCCCHHHHHc
Q 005958          376 LLSLLLATKPSKRISCLDALR  396 (667)
Q Consensus       376 LI~~~L~~DP~kRpSa~elL~  396 (667)
                      ||.+||+.||++|||+.++++
T Consensus       255 li~~~l~~dP~~Rps~~~l~~  275 (310)
T 3s95_A          255 ITVRCCDLDPEKRPSFVKLEH  275 (310)
T ss_dssp             HHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHccCChhhCcCHHHHHH
Confidence            999999999999999999986

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=3.5e-41  Score=348.44  Aligned_cols=246  Identities=16%  Similarity=0.170  Sum_probs=197.5

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      ..+.+..++|++.+.||+|+||    +||+|.+.      ++..||+|++.... ..+.+.+|++++++++      |||
T Consensus        17 ~~~~~~~~~y~~~~~lg~G~~g----~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~------h~~   80 (283)
T 3gen_A           17 GSWEIDPKDLTFLKELGTGQFG----VVKYGKWR------GQYDVAIKMIKEGSMSEDEFIEEAKVMMNLS------HEK   80 (283)
T ss_dssp             CTTBCCGGGEEEEEECC---CE----EEEEEEET------TTEEEEEEEECTTSBCHHHHHHHHHHHHTCC------CTT
T ss_pred             CCccCCHHHHHhHhhcCCCCCc----eEEEEEEc------CCCeEEEEEecCCCCCHHHHHHHHHHHhcCC------CCC
Confidence            3456777899999999999999    99999887      47889999998643 3466789999999994      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     +.+.+++||| |+++|+|.+++....        ..+++                    ..++.++
T Consensus        81 i~~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~--------~~~~~--------------------~~~~~i~  126 (283)
T 3gen_A           81 LVQLYGVCT-----KQRPIFIITE-YMANGCLLNYLREMR--------HRFQT--------------------QQLLEMC  126 (283)
T ss_dssp             BCCEEEEEC-----SSSSEEEEEC-CCTTCBHHHHHHCGG--------GCCCH--------------------HHHHHHH
T ss_pred             EeeEEEEEe-----cCCCeEEEEe-ccCCCcHHHHHHHhc--------cCCCH--------------------HHHHHHH
Confidence            999999998     7788999999 999999999997632        13554                    4578899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC----------CCCCCCcccccCCCCCCchhhH
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED----------GPNNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~----------~~~Y~APE~l~~~~~ys~ksDI  307 (667)
                      .||+.||.|||++||+||||||+|||++. ++.+||+|||++......          .+.|+|||.+. ...++.++||
T Consensus       127 ~qi~~~l~~lH~~~i~H~dikp~Nili~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Dv  204 (283)
T 3gen_A          127 KDVCEAMEYLESKQFLHRDLAARNCLVND-QGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLM-YSKFSSKSDI  204 (283)
T ss_dssp             HHHHHHHHHHHHTTCCCSSCSGGGEEECT-TSCEEECSTTGGGGBCCHHHHSTTSTTSCGGGCCHHHHH-HCCCSHHHHH
T ss_pred             HHHHHHHHHHHHCCccCCCCccceEEEcC-CCCEEEccccccccccccccccccCCccCcccCCHHHhc-cCCCCchhhH
Confidence            99999999999999999999999999998 899999999999755322          14599999655 4468999999


Q ss_pred             HHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          308 RCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       308 WSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      |||||++|+|++ |++||..            .........+....         ........++++.+||.+||+.||+
T Consensus       205 ~slG~~l~~l~t~g~~p~~~------------~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~li~~~l~~~p~  263 (283)
T 3gen_A          205 WAFGVLMWEIYSLGKMPYER------------FTNSETAEHIAQGL---------RLYRPHLASEKVYTIMYSCWHEKAD  263 (283)
T ss_dssp             HHHHHHHHHHHTTTCCTTTT------------SCHHHHHHHHHTTC---------CCCCCTTCCHHHHHHHHHTTCSSGG
T ss_pred             HHHHHHHHHHHhCCCCCccc------------cChhHHHHHHhccc---------CCCCCCcCCHHHHHHHHHHccCChh
Confidence            999999999998 9999852            22222222222111         1122345678999999999999999


Q ss_pred             CCCCHHHHHcC
Q 005958          387 KRISCLDALRH  397 (667)
Q Consensus       387 kRpSa~elL~H  397 (667)
                      +|||+.++++|
T Consensus       264 ~Rps~~~ll~~  274 (283)
T 3gen_A          264 ERPTFKILLSN  274 (283)
T ss_dssp             GSCCHHHHHHH
T ss_pred             HCcCHHHHHHH
Confidence            99999999976

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=2.1e-41  Score=360.97  Aligned_cols=261  Identities=17%  Similarity=0.204  Sum_probs=184.4

Q ss_pred             cccCCeEEEe-EeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           83 FNMGDFKILD-RVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        83 ~~~~~y~i~~-~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ...++|++.+ .||+|+||    +||+|.+..     +++.||||++....   ...+|+..+.++.     .||||+++
T Consensus        25 ~~~~~y~i~~~~lG~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~---~~~~e~~~~~~~~-----~h~~i~~~   87 (336)
T 3fhr_A           25 AVTDDYQLSKQVLGLGVNG----KVLECFHRR-----TGQKCALKLLYDSP---KARQEVDHHWQAS-----GGPHIVCI   87 (336)
T ss_dssp             CGGGTEEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEESSH---HHHHHHHHHHHHT-----TSTTBCCE
T ss_pred             cccceeEecceeeeeCCCe----EEEEEEECC-----CCCEEEEEEecCcH---HHHHHHHHHHHhc-----CCCChHHH
Confidence            3458899965 69999999    999999998     79999999996532   2344555444443     69999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.... .....+++||| |+++|+|.+++.....       ..+++                    ..++.++.||+
T Consensus        88 ~~~~~~~~-~~~~~~~lv~e-~~~gg~L~~~l~~~~~-------~~l~~--------------------~~~~~i~~ql~  138 (336)
T 3fhr_A           88 LDVYENMH-HGKRCLLIIME-CMEGGELFSRIQERGD-------QAFTE--------------------REAAEIMRDIG  138 (336)
T ss_dssp             EEEEEEEE-TTEEEEEEEEE-CCTTEEHHHHHHTC-C-------CCCBH--------------------HHHHHHHHHHH
T ss_pred             HHHHhhcc-CCCceEEEEEe-ccCCCCHHHHHHhcCC-------CCCCH--------------------HHHHHHHHHHH
Confidence            99997321 13567999999 9999999999987531       13444                    56788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCC--CCeEEEeeecccccccCC-------CCCCCCcccccCCCCCCchhhHHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPV--DRHIKVGILGNAADFYED-------GPNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~--~~~vKL~DFGlA~~~~~~-------~~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      .||.|||++||+||||||+|||++..  ++.+||+|||++......       .+.|+|||++ ....|+.++|||||||
T Consensus       139 ~~l~~LH~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~t~~y~aPE~~-~~~~~~~~~Di~slG~  217 (336)
T 3fhr_A          139 TAIQFLHSHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNALQTPCYTPYYVAPEVL-GPEKYDKSCDMWSLGV  217 (336)
T ss_dssp             HHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC-----------------------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCeecCCCCHHHEEEEecCCCceEEEeccccceeccccccccCCCCcCccChhhh-CCCCCCchhhHHHHHH
Confidence            99999999999999999999999862  456999999999765433       3679999954 5556899999999999


Q ss_pred             HHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHH
Q 005958          313 MMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCL  392 (667)
Q Consensus       313 iLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~  392 (667)
                      ++|+|++|.+||.......           .............   .....+....+++++++||.+||+.||++|||++
T Consensus       218 il~~l~~g~~pf~~~~~~~-----------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~  283 (336)
T 3fhr_A          218 IMYILLCGFPPFYSNTGQA-----------ISPGMKRRIRLGQ---YGFPNPEWSEVSEDAKQLIRLLLKTDPTERLTIT  283 (336)
T ss_dssp             HHHHHHHSSCCC-----------------------------------CCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHH
T ss_pred             HHHHHHHCCCCCCCccchh-----------hhhhHHHhhhccc---cccCchhhccCCHHHHHHHHHHCCCChhHCcCHH
Confidence            9999999999996321100           0000000000000   0011223456889999999999999999999999


Q ss_pred             HHHcCCCCCCCC
Q 005958          393 DALRHPFLCGPR  404 (667)
Q Consensus       393 elL~HPwf~~~~  404 (667)
                      |+|+||||++..
T Consensus       284 ell~hp~~~~~~  295 (336)
T 3fhr_A          284 QFMNHPWINQSM  295 (336)
T ss_dssp             HHHHSHHHHTGG
T ss_pred             HHhcCccccccc
Confidence            999999998743

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=4.6e-41  Score=344.82  Aligned_cols=243  Identities=17%  Similarity=0.167  Sum_probs=198.4

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ++..++|++.+.||+|+||    .||+|.+.      ++..||+|++.... ..+.+.+|++++++++      ||||++
T Consensus         4 ~l~~~~y~~~~~lg~G~~g----~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~------h~~i~~   67 (268)
T 3sxs_A            4 ELKREEITLLKELGSGQFG----VVKLGKWK------GQYDVAVKMIKEGSMSEDEFFQEAQTMMKLS------HPKLVK   67 (268)
T ss_dssp             BCCGGGEEEEEEEEEETTE----EEEEEEET------TTEEEEEEEECBTTBCHHHHHHHHHHHHHCC------CTTBCC
T ss_pred             EechhheeeeeeeccCCCc----eEEEEEec------CceeEEEEEeccCCCcHHHHHHHHHHHHhCC------CCCEee
Confidence            4567899999999999999    99999887      47789999998643 3456789999999995      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     +.+..++||| |+++|+|.+++...+        ..+++                    ..++.++.||
T Consensus        68 ~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~--------~~~~~--------------------~~~~~i~~qi  113 (268)
T 3sxs_A           68 FYGVCS-----KEYPIYIVTE-YISNGCLLNYLRSHG--------KGLEP--------------------SQLLEMCYDV  113 (268)
T ss_dssp             EEEEEC-----SSSSEEEEEE-CCTTCBHHHHHHHHG--------GGCCH--------------------HHHHHHHHHH
T ss_pred             EEEEEc-----cCCceEEEEE-ccCCCcHHHHHHHcC--------CCCCH--------------------HHHHHHHHHH
Confidence            999998     7788999999 999999999998643        13444                    4578899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC----------CCCCCcccccCCCCCCchhhHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG----------PNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~----------~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      +.||.|||++||+||||||+|||++. ++.+||+|||++.......          +.|+|||.+. ...++.++|||||
T Consensus       114 ~~~l~~lH~~~i~H~dikp~Nil~~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~sl  191 (268)
T 3sxs_A          114 CEGMAFLESHQFIHRDLAARNCLVDR-DLCVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAPEVFH-YFKYSSKSDVWAF  191 (268)
T ss_dssp             HHHHHHHHHTTEEESSCSGGGEEECT-TCCEEECCTTCEEECCTTCEEECCSCCCCGGGCCHHHHH-HSEEETTHHHHHH
T ss_pred             HHHHHHHHHCCeecCCcCcceEEECC-CCCEEEccCccceecchhhhhcccCCCcCcccCCHHHHh-ccCCchhhhhHHH
Confidence            99999999999999999999999998 8999999999998654432          3599999654 4458999999999


Q ss_pred             HHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          311 GFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       311 GviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      ||++|+|++ |.+||..            .........+   ....      ........++++.+||.+||+.||++||
T Consensus       192 G~il~~l~~~g~~p~~~------------~~~~~~~~~~---~~~~------~~~~~~~~~~~l~~li~~~l~~~p~~Rp  250 (268)
T 3sxs_A          192 GILMWEVFSLGKMPYDL------------YTNSEVVLKV---SQGH------RLYRPHLASDTIYQIMYSCWHELPEKRP  250 (268)
T ss_dssp             HHHHHHHHTTTCCTTTT------------SCHHHHHHHH---HTTC------CCCCCTTSCHHHHHHHHHTTCSSGGGSC
T ss_pred             HHHHHHHHcCCCCCccc------------cChHHHHHHH---HcCC------CCCCCCcChHHHHHHHHHHcCCChhhCc
Confidence            999999999 9999852            1222221111   1111      1122344678999999999999999999


Q ss_pred             CHHHHHcC
Q 005958          390 SCLDALRH  397 (667)
Q Consensus       390 Sa~elL~H  397 (667)
                      |+.|+++|
T Consensus       251 s~~~ll~~  258 (268)
T 3sxs_A          251 TFQQLLSS  258 (268)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            99999986

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=1.6e-40  Score=347.88  Aligned_cols=271  Identities=14%  Similarity=0.119  Sum_probs=206.5

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCC
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      ..+++..++|++.+.||+|+||    .||+|.+.......+++.||||++....   ..+.+.+|+.+++++.     +|
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g----~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~h   86 (313)
T 1t46_A           16 HKWEFPRNRLSFGKTLGAGAFG----KVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLG-----NH   86 (313)
T ss_dssp             GGGBCCGGGEEEEEEEEECSSE----EEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHC-----CC
T ss_pred             cccccChhhhhHHHhhCccCCc----ceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcc-----cC
Confidence            4456677899999999999999    9999997543333478999999997532   3456789999999995     59


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      |||+++++++.     ..+..++||| |+++|+|.+++........       ....    ...........++...++.
T Consensus        87 ~~i~~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~~~~~-------~~~~----~~~~~~~~~~~~~~~~~~~  149 (313)
T 1t46_A           87 MNIVNLLGACT-----IGGPTLVITE-YCCYGDLLNFLRRKRDSFI-------CSKT----SPAIMEDDELALDLEDLLS  149 (313)
T ss_dssp             TTBCCEEEEEC-----SSSSCEEEEE-CCTTEEHHHHHHHTTTTC-------------------------CCCCHHHHHH
T ss_pred             CCeeeEEEEEe-----cCCCcEEEEe-cCCCCCHHHHHHhcccccc-------cccc----cccccccccccCCHHHHHH
Confidence            99999999998     7788999999 9999999999987541100       0000    0000001122345677899


Q ss_pred             HHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-----------CCCCCcccccCCCCCCch
Q 005958          236 LMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-----------PNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       236 i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-----------~~Y~APE~l~~~~~ys~k  304 (667)
                      ++.||+.||.|||++||+||||||+|||++. ++.+||+|||++.......           +.|+|||.+. ...++.+
T Consensus       150 ~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~  227 (313)
T 1t46_A          150 FSYQVAKGMAFLASKNCIHRDLAARNILLTH-GRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIF-NCVYTFE  227 (313)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEEET-TTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHH-HCCCCHH
T ss_pred             HHHHHHHHHHHHHHCCeecCCCccceEEEcC-CCCEEEccccccccccccccceeccCCCCcceeeChHHhc-CCCCChH
Confidence            9999999999999999999999999999998 8999999999998765442           3599999654 4568999


Q ss_pred             hhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhc
Q 005958          305 FDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLAT  383 (667)
Q Consensus       305 sDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~  383 (667)
                      +|||||||++|+|++ |.+||....           ........+.....         ......+++++.+||.+||+.
T Consensus       228 ~Di~slG~il~ellt~g~~p~~~~~-----------~~~~~~~~~~~~~~---------~~~~~~~~~~l~~li~~~l~~  287 (313)
T 1t46_A          228 SDVWSYGIFLWELFSLGSSPYPGMP-----------VDSKFYKMIKEGFR---------MLSPEHAPAEMYDIMKTCWDA  287 (313)
T ss_dssp             HHHHHHHHHHHHHHTTTCCSSTTCC-----------SSHHHHHHHHHTCC---------CCCCTTSCHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCccc-----------chhHHHHHhccCCC---------CCCcccCCHHHHHHHHHHcCC
Confidence            999999999999998 999985321           11222222222111         112345788999999999999


Q ss_pred             CcCCCCCHHHHHcC
Q 005958          384 KPSKRISCLDALRH  397 (667)
Q Consensus       384 DP~kRpSa~elL~H  397 (667)
                      ||++|||+.|++++
T Consensus       288 dp~~Rps~~ell~~  301 (313)
T 1t46_A          288 DPLKRPTFKQIVQL  301 (313)
T ss_dssp             SGGGSCCHHHHHHH
T ss_pred             CchhCcCHHHHHHH
Confidence            99999999999874

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=1.4e-40  Score=345.75  Aligned_cols=249  Identities=13%  Similarity=0.033  Sum_probs=198.9

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      .+..++|++.+.||+|+||    .||+|.+..     +++.||||++......+.+.+|+.+++.+.     .|+||+++
T Consensus         6 ~~~~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~e~~~~~~l~-----~~~~i~~~   71 (298)
T 1csn_A            6 NVVGVHYKVGRRIGEGSFG----VIFEGTNLL-----NNQQVAIKFEPRRSDAPQLRDEYRTYKLLA-----GCTGIPNV   71 (298)
T ss_dssp             CEETTTEEEEEEEEECSSC----EEEEEEETT-----TTEEEEEEEEECCTTSCCHHHHHHHHHHTT-----TCTTCCCE
T ss_pred             cccccceEEEEEEeecCCE----EEEEEEECC-----CCcEEEEEEeccCCccHHHHHHHHHHHHHh-----cCCCCCeE
Confidence            3456889999999999999    999999987     799999999987655667889999999996     69999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     .....++||| |+ +|+|.+++...+        ..+++                    ..++.++.||+
T Consensus        72 ~~~~~-----~~~~~~lv~e-~~-~~~L~~~l~~~~--------~~~~~--------------------~~~~~i~~qi~  116 (298)
T 1csn_A           72 YYFGQ-----EGLHNVLVID-LL-GPSLEDLLDLCG--------RKFSV--------------------KTVAMAAKQML  116 (298)
T ss_dssp             EEEEE-----ETTEEEEEEE-CC-CCBHHHHHHHTT--------TCCCH--------------------HHHHHHHHHHH
T ss_pred             EeecC-----CCceeEEEEE-ec-CCCHHHHHHHhc--------cCCCH--------------------HHHHHHHHHHH
Confidence            99998     7789999999 88 679999998643        13444                    45788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCe-----EEEeeecccccccC----------------CCCCCCCcccccCCCC
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRH-----IKVGILGNAADFYE----------------DGPNNSSPDSNMDRRQ  300 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~-----vKL~DFGlA~~~~~----------------~~~~Y~APE~l~~~~~  300 (667)
                      .||.|||++||+||||||+|||++. ++.     +||+|||+|.....                +.+.|+|||++ ....
T Consensus       117 ~~l~~lH~~~ivH~Dlkp~NIl~~~-~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~-~~~~  194 (298)
T 1csn_A          117 ARVQSIHEKSLVYRDIKPDNFLIGR-PNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTH-LGRE  194 (298)
T ss_dssp             HHHHHHHTTTEECCCCCGGGEEECC-SSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHH-TTCC
T ss_pred             HHHHHHHhCCEecCCCCHHHEEecc-CCCCCCCeEEEEECccccccccccccccccccCccCCCCCcccCCchhh-cCCC
Confidence            9999999999999999999999986 444     99999999976543                23679999965 4556


Q ss_pred             CCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHH-HHHhccCCCCCCCCcccccCCCHHHHHHHHH
Q 005958          301 MMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFL-LQVLNRNSSSGNTGFQILDRNWGAGWNLLSL  379 (667)
Q Consensus       301 ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~  379 (667)
                      ++.++|||||||++|||++|+.||....         ..........+ .......      .......+++++.+||.+
T Consensus       195 ~~~~~Di~slG~il~el~~g~~pf~~~~---------~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~li~~  259 (298)
T 1csn_A          195 QSRRDDLEALGHVFMYFLRGSLPWQGLK---------AATNKQKYERIGEKKQSTP------LRELCAGFPEEFYKYMHY  259 (298)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSSCTTSSCC---------SCCHHHHHHHHHHHHHHSC------HHHHTTTSCHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCCCCcchhh---------ccccHHHHHHHHhhccCcc------HHHHHhhCcHHHHHHHHH
Confidence            8999999999999999999999996321         01111111111 1111110      011234578899999999


Q ss_pred             hhhcCcCCCCCHHHHHc
Q 005958          380 LLATKPSKRISCLDALR  396 (667)
Q Consensus       380 ~L~~DP~kRpSa~elL~  396 (667)
                      ||+.||++|||++++++
T Consensus       260 ~l~~dp~~RP~~~~l~~  276 (298)
T 1csn_A          260 ARNLAFDATPDYDYLQG  276 (298)
T ss_dssp             HHHCCTTCCCCHHHHHH
T ss_pred             HhcCCcccCCCHHHHHH
Confidence            99999999999999875

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=1.1e-40  Score=347.64  Aligned_cols=266  Identities=17%  Similarity=0.206  Sum_probs=200.9

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      ...+....|++++.||+|+||    .||+|++.. .+..+++.||+|++....   ..+.+.+|+++++.++      ||
T Consensus        15 ~~~~~~~~~~~~~~lg~G~~g----~V~~~~~~~-~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~------h~   83 (302)
T 4e5w_A           15 PTHFEKRFLKRIRDLGEGHFG----KVELCRYDP-EGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLY------HE   83 (302)
T ss_dssp             TTBCCGGGEEEEEEEEECSSE----EEEEEEECT-TSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCC------CT
T ss_pred             hhhhhhhhhhhhhccCCCCce----EEEEEEEcc-ccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCC------CC
Confidence            334566789999999999999    999999532 112279999999997532   2356789999999995      99


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++...   ....+++||| |+++|+|.+++....        ..+++                    ..++.+
T Consensus        84 ~i~~~~~~~~~~---~~~~~~lv~e-~~~~~~L~~~l~~~~--------~~~~~--------------------~~~~~~  131 (302)
T 4e5w_A           84 NIVKYKGICTED---GGNGIKLIME-FLPSGSLKEYLPKNK--------NKINL--------------------KQQLKY  131 (302)
T ss_dssp             TBCCEEEEEEC------CCEEEEEE-CCTTCBHHHHHHHHT--------TTCCH--------------------HHHHHH
T ss_pred             CeeeeeeEEecC---CCceEEEEEE-eCCCCcHHHHHHhcc--------ccCCH--------------------HHHHHH
Confidence            999999999833   3477999999 999999999996543        13444                    457889


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC------------CCCCCcccccCCCCCCch
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG------------PNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~------------~~Y~APE~l~~~~~ys~k  304 (667)
                      +.||+.||+|||++||+||||||+|||++. ++.+||+|||++.......            ..|+|||++. ...++.+
T Consensus       132 ~~~i~~~l~~lH~~~i~H~dikp~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~  209 (302)
T 4e5w_A          132 AVQICKGMDYLGSRQYVHRDLAARNVLVES-EHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLM-QSKFYIA  209 (302)
T ss_dssp             HHHHHHHHHHHHHTTEECSCCSGGGEEEEE-TTEEEECCCTTCEECCTTCCEEECCCCTTCCGGGCCHHHHH-HCEEEHH
T ss_pred             HHHHHHHHHHhhcCCcccCCCchheEEEcC-CCCEEECcccccccccCCCcceeccCCCCCCccccCCeeec-CCCCCcc
Confidence            999999999999999999999999999998 8999999999998664332            3499999654 4458899


Q ss_pred             hhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          305 FDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       305 sDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      +|||||||++|+|++|..||......+........................      ..+....+++++.+||.+||+.|
T Consensus       210 ~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~li~~~l~~d  283 (302)
T 4e5w_A          210 SDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGK------RLPCPPNCPDEVYQLMRKCWEFQ  283 (302)
T ss_dssp             HHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHHHHTTC------CCCCCTTCCHHHHHHHHHTTCSS
T ss_pred             hhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHHHhccC------CCCCCCCCCHHHHHHHHHHcCCC
Confidence            999999999999999999876433222221111111122222222222211      12344578899999999999999


Q ss_pred             cCCCCCHHHHHc
Q 005958          385 PSKRISCLDALR  396 (667)
Q Consensus       385 P~kRpSa~elL~  396 (667)
                      |++|||+.++++
T Consensus       284 p~~Rps~~~ll~  295 (302)
T 4e5w_A          284 PSNRTSFQNLIE  295 (302)
T ss_dssp             GGGSCCHHHHHH
T ss_pred             CCCCCCHHHHHH
Confidence            999999999986

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=8.5e-41  Score=355.62  Aligned_cols=274  Identities=14%  Similarity=0.101  Sum_probs=204.9

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      .+.+..++|++.+.||+|+||    .||+|++.......++..||||++....   ..+.+.+|+.+++++.     .||
T Consensus        39 ~~~~~~~~y~~~~~lG~G~~g----~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~hp  109 (344)
T 1rjb_A           39 KWEFPRENLEFGKVLGSGAFG----KVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLG-----SHE  109 (344)
T ss_dssp             GGBCCGGGEEEEEEEEECSSE----EEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHC-----CCT
T ss_pred             CcccCHHHceeeeeecCCCCc----eeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhc-----CCC
Confidence            355667899999999999999    9999998543333367899999997532   3356789999999995     499


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhc--CCCCCCCCCccccHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKV--GDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~--~~~~~~~~~~~~~~~~i~  234 (667)
                      ||+++++++.     ..+.+++||| |+++|+|.+++.....        .+++......  ..-........++...++
T Consensus       110 ~iv~~~~~~~-----~~~~~~lv~e-~~~~g~L~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (344)
T 1rjb_A          110 NIVNLLGACT-----LSGPIYLIFE-YCCYGDLLNYLRSKRE--------KFSEDEIEYENQKRLEEEEDLNVLTFEDLL  175 (344)
T ss_dssp             TBCCEEEEEC-----SSSSCEEEEE-CCTTCBHHHHHHTTTT--------CC---------------------CCHHHHH
T ss_pred             CeeeEEEEEe-----eCCccEEEEe-cCCCCcHHHHHhhccc--------cccccccchhhhcccccccccccCCHHHHH
Confidence            9999999998     7788999999 9999999999987541        1111110000  000000112235567889


Q ss_pred             HHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-----------CCCCCcccccCCCCCCc
Q 005958          235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-----------PNNSSPDSNMDRRQMMI  303 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-----------~~Y~APE~l~~~~~ys~  303 (667)
                      .++.||+.||.|||++||+||||||+|||++. ++.+||+|||++.......           +.|+|||++. ...++.
T Consensus       176 ~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~-~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~  253 (344)
T 1rjb_A          176 CFAYQVAKGMEFLEFKSCVHRDLAARNVLVTH-GKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLF-EGIYTI  253 (344)
T ss_dssp             HHHHHHHHHHHHHHHTTEEETTCSGGGEEEET-TTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHH-HCCCCH
T ss_pred             HHHHHHHHHHHHHHhCCcccCCCChhhEEEcC-CCcEEeCCCccCcccccCccceeccCccCccCccCHHHhc-cCCCCh
Confidence            99999999999999999999999999999998 8999999999998664332           3599999654 456999


Q ss_pred             hhhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhh
Q 005958          304 AFDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLA  382 (667)
Q Consensus       304 ksDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~  382 (667)
                      ++|||||||++|+|++ |.+||....           ........+....         .......+++++.+||.+||.
T Consensus       254 ~~Di~slG~il~el~t~g~~p~~~~~-----------~~~~~~~~~~~~~---------~~~~~~~~~~~l~~li~~~l~  313 (344)
T 1rjb_A          254 KSDVWSYGILLWEIFSLGVNPYPGIP-----------VDANFYKLIQNGF---------KMDQPFYATEEIYIIMQSCWA  313 (344)
T ss_dssp             HHHHHHHHHHHHHHTTTSCCSSTTCC-----------CSHHHHHHHHTTC---------CCCCCTTCCHHHHHHHHHHTC
T ss_pred             hHhHHHHHHHHHHHHcCCCCCcccCC-----------cHHHHHHHHhcCC---------CCCCCCCCCHHHHHHHHHHcC
Confidence            9999999999999998 999985321           1122222222111         122334578999999999999


Q ss_pred             cCcCCCCCHHHHHcCC
Q 005958          383 TKPSKRISCLDALRHP  398 (667)
Q Consensus       383 ~DP~kRpSa~elL~HP  398 (667)
                      .||++|||+.++++|.
T Consensus       314 ~dp~~Rps~~~l~~~l  329 (344)
T 1rjb_A          314 FDSRKRPSFPNLTSFL  329 (344)
T ss_dssp             SSGGGSCCHHHHHHHH
T ss_pred             CCchhCcCHHHHHHHH
Confidence            9999999999999863

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=5.1e-41  Score=356.42  Aligned_cols=248  Identities=17%  Similarity=0.141  Sum_probs=199.2

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      ...+..++|++.+.||+|+||    .||+|.+...+.  .+..||||+++..   ...+.+.+|+.+++.++      ||
T Consensus        43 ~~~~~~~~y~i~~~lG~G~~g----~V~~~~~~~~~~--~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~------h~  110 (325)
T 3kul_A           43 TREIEASRIHIEKIIGSGDSG----EVCYGRLRVPGQ--RDVPVAIKALKAGYTERQRRDFLSEASIMGQFD------HP  110 (325)
T ss_dssp             CCBCCGGGEEEEEEEEETTTE----EEEEEEECCTTS--CCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCC------CT
T ss_pred             ccccChhHeEEeeEEEeCCCc----EEEEEEEecCCC--CCceEEEEecCCCCCHHHHHHHHHHHHHHHhCC------CC
Confidence            345667899999999999999    999999986221  3456999999753   23456789999999994      99


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++.     +.+..|+||| |+++|+|.+++....        ..+++                    ..+..+
T Consensus       111 ~iv~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~--------~~~~~--------------------~~~~~i  156 (325)
T 3kul_A          111 NIIRLEGVVT-----RGRLAMIVTE-YMENGSLDTFLRTHD--------GQFTI--------------------MQLVGM  156 (325)
T ss_dssp             TBCCEEEEEC-----GGGCCEEEEE-CCTTCBHHHHHHTTT--------TCSCH--------------------HHHHHH
T ss_pred             CCCcEEEEEE-----eCCccEEEee-CCCCCcHHHHHHhcc--------cCCCH--------------------HHHHHH
Confidence            9999999998     7788999999 999999999997642        13444                    457889


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC------------CCCCCcccccCCCCCCch
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG------------PNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~------------~~Y~APE~l~~~~~ys~k  304 (667)
                      +.||+.||.|||++||+||||||+|||++. ++.+||+|||+++......            +.|+|||++. ...|+.+
T Consensus       157 ~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~  234 (325)
T 3kul_A          157 LRGVGAGMRYLSDLGYVHRDLAARNVLVDS-NLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIA-FRTFSSA  234 (325)
T ss_dssp             HHHHHHHHHHHHHTTEECSCCSGGGEEECT-TCCEEECCCSSCEECC----CCEECC---CCGGGSCHHHHH-HCEECHH
T ss_pred             HHHHHHHHHHHHHCCeeCCCCCcceEEECC-CCCEEECCCCcccccccCccceeeccCCCCcccccCHhHhc-CCCCCcH
Confidence            999999999999999999999999999998 8999999999998764432            2599999654 4568999


Q ss_pred             hhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhc
Q 005958          305 FDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLAT  383 (667)
Q Consensus       305 sDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~  383 (667)
                      +|||||||++|||++ |..||..            .....+...+...         ...+....+++++.+||.+||..
T Consensus       235 ~Di~slG~il~ell~~g~~p~~~------------~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~li~~~l~~  293 (325)
T 3kul_A          235 SDVWSFGVVMWEVLAYGERPYWN------------MTNRDVISSVEEG---------YRLPAPMGCPHALHQLMLDCWHK  293 (325)
T ss_dssp             HHHHHHHHHHHHHHTTSCCTTTT------------SCHHHHHHHHHTT---------CCCCCCTTCCHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHcCCCCCccc------------CCHHHHHHHHHcC---------CCCCCCCCcCHHHHHHHHHHccC
Confidence            999999999999999 9999852            2222222222211         11223456789999999999999


Q ss_pred             CcCCCCCHHHHHc
Q 005958          384 KPSKRISCLDALR  396 (667)
Q Consensus       384 DP~kRpSa~elL~  396 (667)
                      ||++|||+.++++
T Consensus       294 dp~~Rps~~eil~  306 (325)
T 3kul_A          294 DRAQRPRFSQIVS  306 (325)
T ss_dssp             SGGGSCCHHHHHH
T ss_pred             ChhhCcCHHHHHH
Confidence            9999999999986

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=4.7e-41  Score=348.19  Aligned_cols=248  Identities=16%  Similarity=0.175  Sum_probs=195.8

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCC--CCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNS--PLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~--~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      ++..++|++.+.||+|+||    .||+|++...+.  ...+..||+|++...  ...+.+.+|+.++++++      |||
T Consensus         4 ~i~~~~y~~~~~lg~G~~g----~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~------h~~   73 (289)
T 4fvq_A            4 KIRNEDLIFNESLGQGTFT----KIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLS------HKH   73 (289)
T ss_dssp             BCCGGGEEEEEEEEEETTE----EEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSC------CTT
T ss_pred             EechhHeeeeeeeccCCCc----eEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCC------CCC
Confidence            4566899999999999999    999999987210  001257999999753  33466789999999995      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     ..+..++||| |+++|+|.+++....        ..+++                    ..++.++
T Consensus        74 iv~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~--------~~~~~--------------------~~~~~i~  119 (289)
T 4fvq_A           74 LVLNYGVCV-----CGDENILVQE-FVKFGSLDTYLKKNK--------NCINI--------------------LWKLEVA  119 (289)
T ss_dssp             BCCEEEEEC-----CTTCCEEEEE-CCTTCBHHHHHHHTG--------GGCCH--------------------HHHHHHH
T ss_pred             EeEEEEEEE-----eCCCCEEEEE-CCCCCCHHHHHHhCC--------CCCCH--------------------HHHHHHH
Confidence            999999998     6778899999 999999999998743        12444                    4577899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCe--------EEEeeecccccccCC-----CCCCCCcccccCCCCCCch
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRH--------IKVGILGNAADFYED-----GPNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~--------vKL~DFGlA~~~~~~-----~~~Y~APE~l~~~~~ys~k  304 (667)
                      .||+.||.|||++||+||||||+|||++. ++.        +||+|||++......     .+.|+|||++.+...++.+
T Consensus       120 ~qi~~~L~~LH~~~ivH~Dlkp~NIll~~-~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  198 (289)
T 4fvq_A          120 KQLAAAMHFLEENTLIHGNVCAKNILLIR-EEDRKTGNPPFIKLSDPGISITVLPKDILQERIPWVPPECIENPKNLNLA  198 (289)
T ss_dssp             HHHHHHHHHHHHTTCCCCCCCGGGEEEEE-CCBGGGTBCCEEEECCCCSCTTTSCHHHHHHTTTTSCHHHHHCGGGCCHH
T ss_pred             HHHHHHHHHHhhCCeECCCcCcceEEEec-CCcccccccceeeeccCcccccccCccccCCcCcccCHHHhCCCCCCCch
Confidence            99999999999999999999999999998 555        999999999765432     3779999977765779999


Q ss_pred             hhHHHHHHHHHHHHhC-CCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhc
Q 005958          305 FDMRCVGFMMAKMVLR-ELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLAT  383 (667)
Q Consensus       305 sDIWSLGviLyemltG-~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~  383 (667)
                      +|||||||++|||++| .+||..            ............    .       .......++++.+||.+||+.
T Consensus       199 ~DiwslG~il~el~~g~~~~~~~------------~~~~~~~~~~~~----~-------~~~~~~~~~~l~~li~~~l~~  255 (289)
T 4fvq_A          199 TDKWSFGTTLWEICSGGDKPLSA------------LDSQRKLQFYED----R-------HQLPAPKAAELANLINNCMDY  255 (289)
T ss_dssp             HHHHHHHHHHHHHHTTTCCTTTT------------SCHHHHHHHHHT----T-------CCCCCCSSCTTHHHHHHHSCS
T ss_pred             hHHHHHHHHHHHHHcCCCCCccc------------cchHHHHHHhhc----c-------CCCCCCCCHHHHHHHHHHcCC
Confidence            9999999999999995 455431            122222221111    0       112234467899999999999


Q ss_pred             CcCCCCCHHHHHcC
Q 005958          384 KPSKRISCLDALRH  397 (667)
Q Consensus       384 DP~kRpSa~elL~H  397 (667)
                      ||++|||+.|+++|
T Consensus       256 dp~~Rps~~~ll~~  269 (289)
T 4fvq_A          256 EPDHRPSFRAIIRD  269 (289)
T ss_dssp             SGGGSCCHHHHHHH
T ss_pred             ChhHCcCHHHHHHH
Confidence            99999999999986

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=1.5e-40  Score=344.22  Aligned_cols=247  Identities=17%  Similarity=0.211  Sum_probs=204.0

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      ..+.+..++|++.+.||+|+||    .||+|.+..     +++.||+|++.... ..+.+.+|+++++.++      |||
T Consensus         6 ~~~~~~~~~~~~~~~lg~G~~g----~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~------h~~   70 (288)
T 3kfa_A            6 DKWEMERTDITMKHKLGGGQYG----EVYEGVWKK-----YSLTVAVKTLKEDTMEVEEFLKEAAVMKEIK------HPN   70 (288)
T ss_dssp             CTTBCCGGGEEEEEESGGGTTC----SEEEEEEGG-----GTEEEEEEEECSCSTHHHHHHHHHHHHHHCC------CTT
T ss_pred             hcccccccceeEEeecCCCCce----eEEEeEecC-----CCEEEEEEecCcCHHHHHHHHHHHHHHHhCC------CCC
Confidence            3455677899999999999999    999999998     79999999997643 3456789999999995      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     +.+.+|+||| |+++|+|.+++.....       ..+++                    ..++.++
T Consensus        71 i~~~~~~~~-----~~~~~~~v~e-~~~~~~L~~~~~~~~~-------~~~~~--------------------~~~~~i~  117 (288)
T 3kfa_A           71 LVQLLGVCT-----REPPFYIITE-FMTYGNLLDYLRECNR-------QEVSA--------------------VVLLYMA  117 (288)
T ss_dssp             BCCEEEEEC-----SSSSEEEEEE-CCTTEEHHHHHHHCCT-------TTSCH--------------------HHHHHHH
T ss_pred             EeeEEEEEc-----cCCCEEEEEE-cCCCCcHHHHHHhccc-------CCccH--------------------hHHHHHH
Confidence            999999998     7788999999 9999999999987431       13443                    4578899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC----------CCCCCcccccCCCCCCchhhH
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG----------PNNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~----------~~Y~APE~l~~~~~ys~ksDI  307 (667)
                      .||+.||.|||++||+||||||+||+++. ++.+||+|||++.......          +.|+|||.+. ...++.++||
T Consensus       118 ~~i~~~l~~lH~~~i~H~dikp~Nil~~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di  195 (288)
T 3kfa_A          118 TQISSAMEYLEKKNFIHRDLAARNCLVGE-NHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLA-YNKFSIKSDV  195 (288)
T ss_dssp             HHHHHHHHHHHHHTCCCSCCSGGGEEECG-GGCEEECCCCGGGTSCSSSSEEETTEEECGGGCCHHHHH-HCCCCHHHHH
T ss_pred             HHHHHHHHHHHHCCccCCCCCcceEEEcC-CCCEEEccCccceeccCCccccccCCccccCcCChhhhc-cCCCCchhhH
Confidence            99999999999999999999999999998 8899999999998665433          4699999654 4568999999


Q ss_pred             HHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          308 RCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       308 WSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      |||||++|+|++ |.+||..            .......+.+....         .......+++++.+||.+||..||+
T Consensus       196 ~slG~il~~ll~~g~~p~~~------------~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~li~~~l~~dp~  254 (288)
T 3kfa_A          196 WAFGVLLWEIATYGMSPYPG------------IDLSQVYELLEKDY---------RMERPEGCPEKVYELMRACWQWNPS  254 (288)
T ss_dssp             HHHHHHHHHHHTTSCCSSTT------------CCGGGHHHHHHTTC---------CCCCCTTCCHHHHHHHHHHTCSSGG
T ss_pred             HHHHHHHHHHHhCCCCCCCC------------CCHHHHHHHHhccC---------CCCCCCCCCHHHHHHHHHHhCCChh
Confidence            999999999999 9999853            22333333332211         1223456789999999999999999


Q ss_pred             CCCCHHHHHc
Q 005958          387 KRISCLDALR  396 (667)
Q Consensus       387 kRpSa~elL~  396 (667)
                      +|||++++++
T Consensus       255 ~Rps~~~~~~  264 (288)
T 3kfa_A          255 DRPSFAEIHQ  264 (288)
T ss_dssp             GSCCHHHHHH
T ss_pred             hCcCHHHHHH
Confidence            9999999976

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.8e-40  Score=358.45  Aligned_cols=267  Identities=16%  Similarity=0.145  Sum_probs=206.6

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCC--CCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSN--SPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMY  154 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~--~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~  154 (667)
                      .+.+..++|++.+.||+|+||    .||+|++....  ....+..||||++....   ....+.+|+++++.+.     .
T Consensus        63 ~~~i~~~~y~i~~~LG~G~~g----~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~  133 (382)
T 3tt0_A           63 RWELPRDRLVLGKPLGEGAFG----QVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIG-----K  133 (382)
T ss_dssp             TTBCCGGGEEEEEEEEECSSE----EEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHC-----C
T ss_pred             ccccchhheEeeeEEecCCCe----EEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhc-----C
Confidence            445667899999999999999    99999986521  11245789999997632   3356789999999995     5


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      ||||+++++++.     ..+.+++||| |+++|+|.+++........     .+.        -.....+...++...++
T Consensus       134 hpnIv~~~~~~~-----~~~~~~lv~e-~~~~g~L~~~l~~~~~~~~-----~~~--------~~~~~~~~~~l~~~~~~  194 (382)
T 3tt0_A          134 HKNIINLLGACT-----QDGPLYVIVE-YASKGNLREYLQARRPPGL-----EYS--------YNPSHNPEEQLSSKDLV  194 (382)
T ss_dssp             CTTBCCEEEEEC-----SSSSCEEEEE-CCTTCBHHHHHHHTCCSSS-----SSC--------CCCCSSCCCCCCHHHHH
T ss_pred             Cchhhhheeeec-----cCCceEEEEE-ecCCCcHHHHHHHhccccc-----ccc--------cccccccccccCHHHHH
Confidence            999999999998     7788999999 9999999999987642110     000        00011122234557788


Q ss_pred             HHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-----------CCCCCcccccCCCCCCc
Q 005958          235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-----------PNNSSPDSNMDRRQMMI  303 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-----------~~Y~APE~l~~~~~ys~  303 (667)
                      .++.||+.||.|||++||+||||||+|||++. ++.+||+|||+|+......           +.|+|||++. ...++.
T Consensus       195 ~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~-~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~  272 (382)
T 3tt0_A          195 SCAYQVARGMEYLASKKCIHRDLAARNVLVTE-DNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALF-DRIYTH  272 (382)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSCCCGGGEEECT-TCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHH-SCCCCH
T ss_pred             HHHHHHHHHHHHHHhCCEecCCCCcceEEEcC-CCcEEEcccCcccccccccccccccCCCCCcceeCHHHhc-CCCCCc
Confidence            99999999999999999999999999999998 8999999999998654321           4599999665 456899


Q ss_pred             hhhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhh
Q 005958          304 AFDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLA  382 (667)
Q Consensus       304 ksDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~  382 (667)
                      ++|||||||++|+|++ |..||.            +.+...+.+.+....         .......+++++.+||.+||+
T Consensus       273 ~~DiwslG~il~ellt~g~~p~~------------~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~li~~~l~  331 (382)
T 3tt0_A          273 QSDVWSFGVLLWEIFTLGGSPYP------------GVPVEELFKLLKEGH---------RMDKPSNCTNELYMMMRDCWH  331 (382)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCSST------------TCCHHHHHHHHHTTC---------CCCCCSSCCHHHHHHHHHHTC
T ss_pred             hhHHHHHHHHHHHHHhCCCCCCC------------CCCHHHHHHHHHcCC---------CCCCCccCCHHHHHHHHHHcC
Confidence            9999999999999999 999985            223333333322111         122345678999999999999


Q ss_pred             cCcCCCCCHHHHHcC
Q 005958          383 TKPSKRISCLDALRH  397 (667)
Q Consensus       383 ~DP~kRpSa~elL~H  397 (667)
                      .||++|||+.|++++
T Consensus       332 ~dP~~Rps~~ell~~  346 (382)
T 3tt0_A          332 AVPSQRPTFKQLVED  346 (382)
T ss_dssp             SSGGGSCCHHHHHHH
T ss_pred             CChhhCcCHHHHHHH
Confidence            999999999999975

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=9.2e-41  Score=354.20  Aligned_cols=247  Identities=13%  Similarity=0.096  Sum_probs=194.0

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      ..++|++.+.||+|+||    .||+|++..     +++.||||++......+.+.+|+.+++.+.     .||||+++++
T Consensus         7 ~~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~E~~~l~~l~-----~h~~i~~~~~   72 (330)
T 2izr_A            7 VGPNFRVGKKIGCGNFG----ELRLGKNLY-----TNEYVAIKLEPMKSRAPQLHLEYRFYKQLG-----SGDGIPQVYY   72 (330)
T ss_dssp             ETTTEEEEEECCC-CTT----SEEEEEETT-----TTEEEEEEEEETTCSSCCHHHHHHHHHHHC-----SCTTSCCEEE
T ss_pred             EcCCeEEEEEeeccCCc----eEEEEEECC-----CCcEEEEEEeccccchHHHHHHHHHHHHhh-----CCCCCCEEEE
Confidence            34789999999999999    999999987     899999999976555556889999999995     5999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++.     ..+..++||| |+ +|+|.+++...+        ..+++                    ..++.++.||+.|
T Consensus        73 ~~~-----~~~~~~lv~e-~~-~~~L~~~~~~~~--------~~~~~--------------------~~~~~i~~qi~~~  117 (330)
T 2izr_A           73 FGP-----CGKYNAMVLE-LL-GPSLEDLFDLCD--------RTFSL--------------------KTVLMIAIQLISR  117 (330)
T ss_dssp             EEE-----ETTEEEEEEE-CC-CCBHHHHHHHTT--------TCCCH--------------------HHHHHHHHHHHHH
T ss_pred             EEe-----cCCccEEEEE-eC-CCCHHHHHHHcC--------CCCCH--------------------HHHHHHHHHHHHH
Confidence            998     6789999999 99 679999998642        14554                    4578899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCe-----EEEeeecccccccC----------------CCCCCCCcccccCCCCCC
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRH-----IKVGILGNAADFYE----------------DGPNNSSPDSNMDRRQMM  302 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~-----vKL~DFGlA~~~~~----------------~~~~Y~APE~l~~~~~ys  302 (667)
                      |+|||++||+||||||+|||++. ++.     +||+|||+|+.+..                +.+.|+|||++. ...++
T Consensus       118 l~~LH~~~iiHrDlkp~Nill~~-~~~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~  195 (330)
T 2izr_A          118 MEYVHSKNLIYRDVKPENFLIGR-PGNKTQQVIHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTHL-GKEQS  195 (330)
T ss_dssp             HHHHHHTTEECCCCCGGGEEECC-GGGTCTTSEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHT-TCCCC
T ss_pred             HHHHHhCCeeccCCCHHHeeecc-CCCCCCceEEEEEcccceeeecCCCCccccccccCCcCCCccccChHHHc-CCCCC
Confidence            99999999999999999999997 665     99999999986432                237899999654 45689


Q ss_pred             chhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhh
Q 005958          303 IAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLA  382 (667)
Q Consensus       303 ~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~  382 (667)
                      .++|||||||++|||++|++||...            ......+.+..+.......   .........+++.+||.+||+
T Consensus       196 ~~~Di~slG~il~ell~g~~Pf~~~------------~~~~~~~~~~~i~~~~~~~---~~~~~~~~~p~~~~li~~~l~  260 (330)
T 2izr_A          196 RRDDLEALGHMFMYFLRGSLPWQGL------------KADTLKERYQKIGDTKRAT---PIEVLCENFPEMATYLRYVRR  260 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCTTTTC------------CCSSHHHHHHHHHHHHHHS---CHHHHTTTCHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhcCCCCcccc------------ccccHHHHHHHHHhhhccC---CHHHHhccChHHHHHHHHHHh
Confidence            9999999999999999999999632            1111111111111000000   001111223499999999999


Q ss_pred             cCcCCCCCHHHHHc
Q 005958          383 TKPSKRISCLDALR  396 (667)
Q Consensus       383 ~DP~kRpSa~elL~  396 (667)
                      .||.+||+++++++
T Consensus       261 ~~p~~RP~~~~l~~  274 (330)
T 2izr_A          261 LDFFEKPDYDYLRK  274 (330)
T ss_dssp             CCTTCCCCHHHHHH
T ss_pred             CCCCCCCCHHHHHH
Confidence            99999999998875

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=1.4e-40  Score=344.36  Aligned_cols=248  Identities=15%  Similarity=0.149  Sum_probs=190.4

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      ...+..++|++.+.||+|+||    .||+|.+....  ..+..||+|++...   ...+.+.+|+.+++++      .||
T Consensus         9 ~~~~~~~~y~~~~~lg~G~~g----~Vy~~~~~~~~--~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l------~h~   76 (281)
T 1mp8_A            9 DYEIQRERIELGRCIGEGQFG----DVHQGIYMSPE--NPALAVAIKTCKNCTSDSVREKFLQEALTMRQF------DHP   76 (281)
T ss_dssp             CCBCCGGGEEEEEEEEECSSS----EEEEEEECCC----CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTC------CCT
T ss_pred             ceEEehHHeEEEeEeeecCCe----eEEEEEEecCC--CCceEEEEEeccccCCHHHHHHHHHHHHHHHhC------CCC
Confidence            345667899999999999999    99999987521  14568999998753   2345678999999999      499


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++.      .+..|+||| |+++|+|.+++...+        ..+++                    ..+..+
T Consensus        77 ~iv~~~~~~~------~~~~~lv~e-~~~~~~L~~~l~~~~--------~~~~~--------------------~~~~~~  121 (281)
T 1mp8_A           77 HIVKLIGVIT------ENPVWIIME-LCTLGELRSFLQVRK--------YSLDL--------------------ASLILY  121 (281)
T ss_dssp             TBCCEEEEEC------SSSCEEEEE-CCTTEEHHHHHHHTT--------TTSCH--------------------HHHHHH
T ss_pred             ccceEEEEEc------cCccEEEEe-cCCCCCHHHHHHhcC--------CCCCH--------------------HHHHHH
Confidence            9999999975      356899999 999999999998643        13444                    457889


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC----------CCCCCcccccCCCCCCchhh
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG----------PNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~----------~~Y~APE~l~~~~~ys~ksD  306 (667)
                      +.||+.||.|||++||+||||||+|||++. ++.+||+|||++.......          +.|+|||++. ...++.++|
T Consensus       122 ~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~D  199 (281)
T 1mp8_A          122 AYQLSTALAYLESKRFVHRDIAARNVLVSS-NDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESIN-FRRFTSASD  199 (281)
T ss_dssp             HHHHHHHHHHHHHTTCCCSCCSGGGEEEEE-TTEEEECC-------------------CCGGGCCHHHHH-HCCCSHHHH
T ss_pred             HHHHHHHHHHHHhCCeecccccHHHEEECC-CCCEEECccccccccCcccccccccCCCcccccChhhcc-cCCCCCccC
Confidence            999999999999999999999999999998 8999999999998654322          4699999654 456899999


Q ss_pred             HHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCc
Q 005958          307 MRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       307 IWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      ||||||++|||++ |.+||..            .........+..   ..      ..+....+++++.+||.+||+.||
T Consensus       200 i~slG~~l~ell~~g~~pf~~------------~~~~~~~~~i~~---~~------~~~~~~~~~~~l~~li~~~l~~~p  258 (281)
T 1mp8_A          200 VWMFGVCMWEILMHGVKPFQG------------VKNNDVIGRIEN---GE------RLPMPPNCPPTLYSLMTKCWAYDP  258 (281)
T ss_dssp             HHHHHHHHHHHHTTSCCTTTT------------CCGGGHHHHHHT---TC------CCCCCTTCCHHHHHHHHHHTCSSG
T ss_pred             chHHHHHHHHHHhcCCCCCCc------------CCHHHHHHHHHc---CC------CCCCCCCCCHHHHHHHHHHccCCh
Confidence            9999999999997 9999853            222222222211   11      123345788999999999999999


Q ss_pred             CCCCCHHHHHcC
Q 005958          386 SKRISCLDALRH  397 (667)
Q Consensus       386 ~kRpSa~elL~H  397 (667)
                      ++|||+.|++++
T Consensus       259 ~~Rps~~~l~~~  270 (281)
T 1mp8_A          259 SRRPRFTELKAQ  270 (281)
T ss_dssp             GGSCCHHHHHHH
T ss_pred             hhCcCHHHHHHH
Confidence            999999999864

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=100.00  E-value=1.6e-40  Score=348.56  Aligned_cols=257  Identities=15%  Similarity=0.192  Sum_probs=188.0

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhH---HHHHHHH-HHHHHHhhccCCC
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQ---RRGRRAI-EVLKKLVRRRLMY  154 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~---~~~~rEi-~iL~~L~~~~~~~  154 (667)
                      ......+++|++++.||+|+||    .||+|.+..     +++.||||++......   .....|+ .+++.+      .
T Consensus        18 ~~~~~~~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~------~   82 (318)
T 2dyl_A           18 QRYQAEINDLENLGEMGSGTCG----QVWKMRFRK-----TGHVIAVKQMRRSGNKEENKRILMDLDVVLKSH------D   82 (318)
T ss_dssp             SEEECCGGGEEEEEEC----------CEEEEEETT-----TCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTT------T
T ss_pred             hhhhhhhccccccceeeecCCe----eEEEEEEec-----CCeEEEEEEecccccchHHHHHHHHHHHHHHhc------C
Confidence            4456678999999999999999    999999987     7999999999753222   2233343 445555      5


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      ||||+++++++.     ..+.+++||| |+++ .+..+.....        ..+++                    ..++
T Consensus        83 h~~i~~~~~~~~-----~~~~~~lv~e-~~~~-~~~~l~~~~~--------~~~~~--------------------~~~~  127 (318)
T 2dyl_A           83 CPYIVQCFGTFI-----TNTDVFIAME-LMGT-CAEKLKKRMQ--------GPIPE--------------------RILG  127 (318)
T ss_dssp             CTTBCCEEEEEE-----CSSEEEEEEC-CCSE-EHHHHHHHHT--------SCCCH--------------------HHHH
T ss_pred             CCceeeEEEEEe-----cCCcEEEEEe-ccCC-cHHHHHHHhc--------cCCCH--------------------HHHH
Confidence            999999999999     7789999999 8843 6666655422        14454                    4578


Q ss_pred             HHHHHHHHHHHHHHHC-CCcccCCCCCcEEEcCCCCeEEEeeecccccccC--------CCCCCCCccccc----CCCCC
Q 005958          235 LLMRDLLIGVNYLHSH-GLAHTELRLENVHISPVDRHIKVGILGNAADFYE--------DGPNNSSPDSNM----DRRQM  301 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~-gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~--------~~~~Y~APE~l~----~~~~y  301 (667)
                      .++.||+.||.|||++ ||+||||||+|||++. ++.+||+|||++.....        +.+.|+|||++.    ....+
T Consensus       128 ~~~~~i~~~l~~lH~~~~i~H~dlkp~Nil~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~  206 (318)
T 2dyl_A          128 KMTVAIVKALYYLKEKHGVIHRDVKPSNILLDE-RGQIKLCDFGISGRLVDDKAKDRSAGCAAYMAPERIDPPDPTKPDY  206 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCCCCCGGGEEECT-TSCEEECCCTTC--------------CCTTCCHHHHC--------C
T ss_pred             HHHHHHHHHHHHHHhhCCEEeCCCCHHHEEECC-CCCEEEEECCCchhccCCccccccCCCccccChhhcccccccccCC
Confidence            8999999999999995 9999999999999998 89999999999976543        237899999764    35568


Q ss_pred             CchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhh
Q 005958          302 MIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLL  381 (667)
Q Consensus       302 s~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L  381 (667)
                      +.++|||||||++|+|++|+.||...           ....   +.+........+    ..+....+++++.+||.+||
T Consensus       207 ~~~~Di~slG~il~~l~~g~~pf~~~-----------~~~~---~~~~~~~~~~~~----~~~~~~~~~~~l~~li~~~l  268 (318)
T 2dyl_A          207 DIRADVWSLGISLVELATGQFPYKNC-----------KTDF---EVLTKVLQEEPP----LLPGHMGFSGDFQSFVKDCL  268 (318)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCTTTTC-----------CSHH---HHHHHHHHSCCC----CCCSSSCCCHHHHHHHHHHT
T ss_pred             ccccchhhHHHHHHHHHhCCCCCCCC-----------CccH---HHHHHHhccCCC----CCCccCCCCHHHHHHHHHHc
Confidence            99999999999999999999998521           1111   112222222111    12223457899999999999


Q ss_pred             hcCcCCCCCHHHHHcCCCCCCCC
Q 005958          382 ATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       382 ~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      +.||.+|||++++++||||++..
T Consensus       269 ~~dp~~Rps~~~ll~h~~~~~~~  291 (318)
T 2dyl_A          269 TKDHRKRPKYNKLLEHSFIKRYE  291 (318)
T ss_dssp             CSCTTTSCCHHHHTTSHHHHHHH
T ss_pred             cCChhHCcCHHHHhhCHHHHhcc
Confidence            99999999999999999997643

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=1e-40  Score=354.16  Aligned_cols=273  Identities=14%  Similarity=0.148  Sum_probs=203.6

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      ..+..++|++.+.||+|+||    .||+|++.......+++.||||+++...   ..+.+.+|+.++++++      |||
T Consensus        42 ~~~~~~~~~~~~~lg~G~~g----~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~------hp~  111 (343)
T 1luf_A           42 LEYPRNNIEYVRDIGEGAFG----RVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFD------NPN  111 (343)
T ss_dssp             TBCCGGGCEEEEEEEECSSC----EEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCC------CTT
T ss_pred             eEecHHHCeeeeeeeecCCe----eEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCC------CCC
Confidence            35667899999999999999    9999999853333367999999997532   3456789999999994      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     ..+.+|+||| |+++|+|.+++.........    .+....... ...........++...++.++
T Consensus       112 iv~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~l~~~~~~~i~  180 (343)
T 1luf_A          112 IVKLLGVCA-----VGKPMCLLFE-YMAYGDLNEFLRSMSPHTVC----SLSHSDLST-RARVSSPGPPPLSCAEQLCIA  180 (343)
T ss_dssp             BCCEEEEEC-----SSSSCEEEEE-CCTTCBHHHHHHHTCC---------------------------CCCCHHHHHHHH
T ss_pred             EEEEEEEEc-----cCCceEEEEe-cCCCCcHHHHHHHhCccccc----ccccccccc-cccccccCCCCCCHHHHHHHH
Confidence            999999998     7788999999 99999999999875311100    000000000 000001111345567889999


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhh
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksD  306 (667)
                      .||+.||.|||++||+||||||+|||++. ++.+||+|||++......           .+.|+|||++. ...++.++|
T Consensus       181 ~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~~D  258 (343)
T 1luf_A          181 RQVAAGMAYLSERKFVHRDLATRNCLVGE-NMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIF-YNRYTTESD  258 (343)
T ss_dssp             HHHHHHHHHHHHTTCCCSCCSGGGEEECG-GGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHH-HCCCCHHHH
T ss_pred             HHHHHHHHHHHhCCeecCCCCcceEEECC-CCeEEEeecCCCcccccCccccccCCCcccceecChhhhc-cCCcCcccc
Confidence            99999999999999999999999999998 899999999999754321           24699999655 445999999


Q ss_pred             HHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCc
Q 005958          307 MRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       307 IWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      ||||||++|||++ |..||.            +.....+...+.   ....      ......+++++.+||.+||+.||
T Consensus       259 i~slG~il~el~t~g~~p~~------------~~~~~~~~~~~~---~~~~------~~~~~~~~~~l~~li~~~l~~~p  317 (343)
T 1luf_A          259 VWAYGVVLWEIFSYGLQPYY------------GMAHEEVIYYVR---DGNI------LACPENCPLELYNLMRLCWSKLP  317 (343)
T ss_dssp             HHHHHHHHHHHHTTTCCTTT------------TSCHHHHHHHHH---TTCC------CCCCTTCCHHHHHHHHHHTCSSG
T ss_pred             cHHHHHHHHHHHhcCCCcCC------------CCChHHHHHHHh---CCCc------CCCCCCCCHHHHHHHHHHcccCc
Confidence            9999999999999 999985            222322222221   1111      12335678899999999999999


Q ss_pred             CCCCCHHHHHcC
Q 005958          386 SKRISCLDALRH  397 (667)
Q Consensus       386 ~kRpSa~elL~H  397 (667)
                      ++|||+.+++++
T Consensus       318 ~~Rps~~~~~~~  329 (343)
T 1luf_A          318 ADRPSFCSIHRI  329 (343)
T ss_dssp             GGSCCHHHHHHH
T ss_pred             ccCCCHHHHHHH
Confidence            999999999864

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=3.6e-41  Score=365.08  Aligned_cols=246  Identities=16%  Similarity=0.181  Sum_probs=200.4

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCC
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      ..+.+..++|++.+.||+|+||    .||+|.+..     +++.||||+++...   ..+.+.+|+++|++++      |
T Consensus       107 ~~~~~~~~~~~~~~~lG~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~------h  171 (377)
T 3cbl_A          107 DKWVLNHEDLVLGEQIGRGNFG----EVFSGRLRA-----DNTLVAVKSCRETLPPDLKAKFLQEARILKQYS------H  171 (377)
T ss_dssp             CTTBCCGGGEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCC------C
T ss_pred             cccEEchHHeEEeeEeccCCCC----eEEEEEEec-----CCeEEEEEEccccCCHHHHHHHHHHHHHHHhCC------C
Confidence            3456667899999999999999    999999987     78999999987532   2234678999999994      9


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      |||+++++++.     ..+.+|+||| |+++|+|.+++...+        ..+++                    ..+..
T Consensus       172 pniv~~~~~~~-----~~~~~~lv~e-~~~~g~L~~~l~~~~--------~~~~~--------------------~~~~~  217 (377)
T 3cbl_A          172 PNIVRLIGVCT-----QKQPIYIVME-LVQGGDFLTFLRTEG--------ARLRV--------------------KTLLQ  217 (377)
T ss_dssp             TTBCCEEEEEC-----SSSSCEEEEE-CCTTCBHHHHHHHHG--------GGCCH--------------------HHHHH
T ss_pred             CCEEEEEEEEe-----cCCCcEEEEE-cCCCCCHHHHHHhcC--------CCCCH--------------------HHHHH
Confidence            99999999998     7788999999 999999999998643        13443                    45788


Q ss_pred             HHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCch
Q 005958          236 LMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       236 i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~k  304 (667)
                      ++.||+.||+|||++||+||||||+|||++. ++.+||+|||+|+.....           ...|+|||++. ...|+.+
T Consensus       218 ~~~qi~~~l~~LH~~~ivHrDlkp~Nil~~~-~~~~kl~DfG~s~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~  295 (377)
T 3cbl_A          218 MVGDAAAGMEYLESKCCIHRDLAARNCLVTE-KNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALN-YGRYSSE  295 (377)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGEEECT-TCCEEECCGGGCEECTTSEEECCSSCCEEEGGGSCHHHHH-HCEEEHH
T ss_pred             HHHHHHHHHHHHHHCCcCCcccCHHHEEEcC-CCcEEECcCCCceecCCCceeecCCCCCCCcCcCCHhHhc-cCCCCch
Confidence            9999999999999999999999999999998 899999999999764332           13599999654 4558999


Q ss_pred             hhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhc
Q 005958          305 FDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLAT  383 (667)
Q Consensus       305 sDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~  383 (667)
                      +|||||||++|||++ |.+||+.            .......+.+....         ..+.+..+++++.+||.+||+.
T Consensus       296 ~DvwslG~il~el~t~g~~p~~~------------~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~li~~cl~~  354 (377)
T 3cbl_A          296 SDVWSFGILLWETFSLGASPYPN------------LSNQQTREFVEKGG---------RLPCPELCPDAVFRLMEQCWAY  354 (377)
T ss_dssp             HHHHHHHHHHHHHHTTSCCSSTT------------SCHHHHHHHHHTTC---------CCCCCTTCCHHHHHHHHHHTCS
T ss_pred             hhHHHHHHHHHHHHhCCCCCCCC------------CCHHHHHHHHHcCC---------CCCCCCCCCHHHHHHHHHHcCC
Confidence            999999999999998 9999863            22223333322111         1233456788999999999999


Q ss_pred             CcCCCCCHHHHHc
Q 005958          384 KPSKRISCLDALR  396 (667)
Q Consensus       384 DP~kRpSa~elL~  396 (667)
                      ||++|||++++++
T Consensus       355 dP~~Rps~~~i~~  367 (377)
T 3cbl_A          355 EPGQRPSFSTIYQ  367 (377)
T ss_dssp             SGGGSCCHHHHHH
T ss_pred             CchhCcCHHHHHH
Confidence            9999999999975

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=3.6e-41  Score=356.65  Aligned_cols=265  Identities=15%  Similarity=0.174  Sum_probs=195.4

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-HHHHHHHHHHHHHHhhccCCCCCc
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-QRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      ....+..++|++.+.||+|+||    +||+|++.       ++.||||++..... .....+|+.+++++      .|||
T Consensus        17 ~n~~~~~~~y~~~~~lg~G~~g----~Vy~~~~~-------~~~vavK~~~~~~~~~~~~~~E~~~l~~l------~hpn   79 (322)
T 3soc_A           17 ENLYFQSMPLQLLEVKARGRFG----CVWKAQLL-------NEYVAVKIFPIQDKQSWQNEYEVYSLPGM------KHEN   79 (322)
T ss_dssp             CCEEETTEEEEEEEEEECSTTC----EEEEEEET-------TEEEEEEEECGGGHHHHHHHHHHHTSTTC------CCTT
T ss_pred             cccccchhhchhhheecccCce----EEEEEEEC-------CCEEEEEEeecCchHHHHHHHHHHHHhcC------CCCC
Confidence            4455777899999999999999    99999865       58999999976432 23446688888888      4999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++..... ....+++||| |+++|+|.+++...          .+++                    ..++.++
T Consensus        80 iv~~~~~~~~~~~-~~~~~~lv~e-~~~~g~L~~~l~~~----------~~~~--------------------~~~~~i~  127 (322)
T 3soc_A           80 ILQFIGAEKRGTS-VDVDLWLITA-FHEKGSLSDFLKAN----------VVSW--------------------NELCHIA  127 (322)
T ss_dssp             BCCEEEEEEEECS-SSEEEEEEEE-CCTTCBHHHHHHHC----------CBCH--------------------HHHHHHH
T ss_pred             chhhcceeccCCC-CCceEEEEEe-cCCCCCHHHHHHhc----------CCCH--------------------HHHHHHH
Confidence            9999999984311 2456899999 99999999999864          3444                    4578899


Q ss_pred             HHHHHHHHHHHHC----------CCcccCCCCCcEEEcCCCCeEEEeeecccccccC-----------CCCCCCCccccc
Q 005958          238 RDLLIGVNYLHSH----------GLAHTELRLENVHISPVDRHIKVGILGNAADFYE-----------DGPNNSSPDSNM  296 (667)
Q Consensus       238 ~QIl~aL~yLHs~----------gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-----------~~~~Y~APE~l~  296 (667)
                      .||+.||.|||++          ||+||||||+|||++. ++.+||+|||+|+....           +.+.|+|||++.
T Consensus       128 ~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~-~~~~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~  206 (322)
T 3soc_A          128 ETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKN-NLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLE  206 (322)
T ss_dssp             HHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECT-TCCEEECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHT
T ss_pred             HHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECC-CCeEEEccCCcccccccccCccccccCccCccccCHhhcc
Confidence            9999999999999          9999999999999998 89999999999975432           236799999766


Q ss_pred             CC----CCCCchhhHHHHHHHHHHHHhCCCCChhhhh----hhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccC
Q 005958          297 DR----RQMMIAFDMRCVGFMMAKMVLRELMDPLIFT----KFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDR  368 (667)
Q Consensus       297 ~~----~~ys~ksDIWSLGviLyemltG~~PF~~~~~----~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  368 (667)
                      +.    ..++.++|||||||++|||++|++||.....    .+............+...   ..................
T Consensus       207 ~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  283 (322)
T 3soc_A          207 GAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEV---VVHKKKRPVLRDYWQKHA  283 (322)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSCCHHHHHHH---HTTSCCCCCCCGGGGSSH
T ss_pred             cccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCCchhhhhhh---hhcccCCCCccccccccc
Confidence            53    3456789999999999999999999974211    111101111112222222   111111100000001112


Q ss_pred             CCHHHHHHHHHhhhcCcCCCCCHHHHHc
Q 005958          369 NWGAGWNLLSLLLATKPSKRISCLDALR  396 (667)
Q Consensus       369 ~s~e~~dLI~~~L~~DP~kRpSa~elL~  396 (667)
                      .++++.+||.+||+.||++|||+.|+++
T Consensus       284 ~~~~l~~li~~cl~~dP~~Rps~~ell~  311 (322)
T 3soc_A          284 GMAMLCETIEECWDHDAEARLSAGCVGE  311 (322)
T ss_dssp             HHHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             hHHHHHHHHHHHccCChhhCcCHHHHHH
Confidence            3457999999999999999999999986

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=100.00  E-value=2.7e-40  Score=365.22  Aligned_cols=255  Identities=14%  Similarity=0.133  Sum_probs=191.1

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYV  165 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~  165 (667)
                      +.|.+.+.||+|+||    +||.+...      +|+.||||++.... .+...+|+.+|+++.     +||||+++++++
T Consensus        15 ~~~~~~~~LG~G~~g----~V~~~~~~------~g~~vAvK~~~~~~-~~~~~~E~~~l~~l~-----~HpnIv~~~~~~   78 (434)
T 2rio_A           15 NLVVSEKILGYGSSG----TVVFQGSF------QGRPVAVKRMLIDF-CDIALMEIKLLTESD-----DHPNVIRYYCSE   78 (434)
T ss_dssp             SCEEEEEEEEECSTT----CEEEEEES------SSSEEEEEEEEGGG-HHHHHHHHHHHHHHT-----TSTTBCCEEEEE
T ss_pred             heeeccCeEeeCCCe----EEEEEEEE------CCeEEEEEEEcHHH-HHHHHHHHHHHHhcc-----CCCCcCeEEEEE
Confidence            556778999999999    99876443      68999999987643 345789999999885     599999999999


Q ss_pred             EecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHH
Q 005958          166 SSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVN  245 (667)
Q Consensus       166 ~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~  245 (667)
                      .     +.+.+||||| ||++ +|.+++...........  ..+                    ...+..++.||+.||+
T Consensus        79 ~-----~~~~~~lv~E-~~~g-sL~~~l~~~~~~~~~~~--~~~--------------------~~~~~~i~~qi~~aL~  129 (434)
T 2rio_A           79 T-----TDRFLYIALE-LCNL-NLQDLVESKNVSDENLK--LQK--------------------EYNPISLLRQIASGVA  129 (434)
T ss_dssp             E-----CSSEEEEEEC-CCSE-EHHHHHHTC----------------------------------CCHHHHHHHHHHHHH
T ss_pred             e-----cCCeEEEEEe-cCCC-CHHHHHhccCCCchhhh--hcc--------------------chhHHHHHHHHHHHHH
Confidence            8     7889999999 9975 99999987542111000  001                    1235679999999999


Q ss_pred             HHHHCCCcccCCCCCcEEEcCC------------CCeEEEeeecccccccC-------------CCCCCCCcccccC---
Q 005958          246 YLHSHGLAHTELRLENVHISPV------------DRHIKVGILGNAADFYE-------------DGPNNSSPDSNMD---  297 (667)
Q Consensus       246 yLHs~gIvHrDLKPeNILl~~~------------~~~vKL~DFGlA~~~~~-------------~~~~Y~APE~l~~---  297 (667)
                      |||++||+||||||+|||++..            ++.+||+|||+|+....             +.+.|+|||++.+   
T Consensus       130 ~LH~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  209 (434)
T 2rio_A          130 HLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNN  209 (434)
T ss_dssp             HHHHTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC--------------CCTTSCHHHHSCCCT
T ss_pred             HHHHCCccccCCChHhEEEecCcccccccccCCCceEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccc
Confidence            9999999999999999999751            35899999999986543             2368999997654   


Q ss_pred             ---CCCCCchhhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHH
Q 005958          298 ---RRQMMIAFDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAG  373 (667)
Q Consensus       298 ---~~~ys~ksDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~  373 (667)
                         ...++.++|||||||++|||++ |.+||.+...            . ....+....    ............+++++
T Consensus       210 ~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~------------~-~~~i~~~~~----~~~~~~~~~~~~~~~~~  272 (434)
T 2rio_A          210 LQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYS------------R-ESNIIRGIF----SLDEMKCLHDRSLIAEA  272 (434)
T ss_dssp             TSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTT------------H-HHHHHHTCC----CCCCCTTCCCHHHHHHH
T ss_pred             cccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchh------------h-HHHHhcCCC----CcccccccccccchHHH
Confidence               3568999999999999999999 9999852211            0 111111111    10000011122346789


Q ss_pred             HHHHHHhhhcCcCCCCCHHHHHcCCCCCC
Q 005958          374 WNLLSLLLATKPSKRISCLDALRHPFLCG  402 (667)
Q Consensus       374 ~dLI~~~L~~DP~kRpSa~elL~HPwf~~  402 (667)
                      ++||.+||+.||++|||+.|+++||||+.
T Consensus       273 ~~li~~~L~~dP~~Rps~~eil~hp~f~~  301 (434)
T 2rio_A          273 TDLISQMIDHDPLKRPTAMKVLRHPLFWP  301 (434)
T ss_dssp             HHHHHHHTCSSGGGSCCHHHHHTSGGGSC
T ss_pred             HHHHHHHhhCChhhCCCHHHHHhCCccCC
Confidence            99999999999999999999999999975

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=2.1e-40  Score=347.40  Aligned_cols=269  Identities=16%  Similarity=0.128  Sum_probs=204.6

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      .+.+..++|++.+.||+|+||    .||+|.+.......+++.||||++....   ..+.+.+|+.+++++.     +||
T Consensus        21 ~~~~~~~~y~~~~~lg~G~~g----~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~hp   91 (316)
T 2xir_A           21 KWEFPRDRLKLGKPLGRGAFG----QVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIG-----HHL   91 (316)
T ss_dssp             HHBCCGGGEEEEEEEEECSSE----EEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHC-----CCT
T ss_pred             ceecchhheeeeeEEcCCCce----eEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcc-----cCC
Confidence            345667899999999999999    9999997654334478999999997632   3346789999999996     599


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++..    .+..+++||| |+++|+|.+++.........   ......          ......++...++.+
T Consensus        92 ~iv~~~~~~~~----~~~~~~lv~e-~~~~~~L~~~l~~~~~~~~~---~~~~~~----------~~~~~~~~~~~~~~~  153 (316)
T 2xir_A           92 NVVNLLGACTK----PGGPLMVIVE-FCKFGNLSTYLRSKRNEFVP---YKVAPE----------DLYKDFLTLEHLICY  153 (316)
T ss_dssp             TBCCEEEEECC----TTSCCEEEEE-CCTTEEHHHHHHTCTTSEEC---C-----------------CTTCEEHHHHHHH
T ss_pred             CeeeEEEEEec----CCCceEEEEE-cCCCCcHHHHHHhccccccc---ccccch----------hhhccccCHHHHHHH
Confidence            99999999872    3456999999 99999999999875421000   000000          000112455778999


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-----------CCCCCcccccCCCCCCchh
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-----------PNNSSPDSNMDRRQMMIAF  305 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-----------~~Y~APE~l~~~~~ys~ks  305 (667)
                      +.||+.||.|||++||+||||||+|||++. ++.+||+|||++.......           +.|+|||++. ...++.++
T Consensus       154 ~~qi~~al~~lH~~~i~H~dikp~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~~  231 (316)
T 2xir_A          154 SFQVAKGMEFLASRKCIHRDLAARNILLSE-KNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIF-DRVYTIQS  231 (316)
T ss_dssp             HHHHHHHHHHHHHTTCCCSCCSGGGEEECG-GGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHH-HCCCCHHH
T ss_pred             HHHHHHHHHHHHhCCcccccCccceEEECC-CCCEEECCCccccccccCccceeccCCCcceeecCchhhc-cccccchh
Confidence            999999999999999999999999999998 8999999999998654332           4699999654 45689999


Q ss_pred             hHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          306 DMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       306 DIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      |||||||++|+|++ |.+||...           .....+...+....         ........++++.+||.+||+.|
T Consensus       232 Di~slG~il~~l~t~g~~p~~~~-----------~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~li~~~l~~d  291 (316)
T 2xir_A          232 DVWSFGVLLWEIFSLGASPYPGV-----------KIDEEFCRRLKEGT---------RMRAPDYTTPEMYQTMLDCWHGE  291 (316)
T ss_dssp             HHHHHHHHHHHHHTTSCCSSTTC-----------CCSHHHHHHHHHTC---------CCCCCTTCCHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHHHhCCCCCCccc-----------chhHHHHHHhccCc---------cCCCCCCCCHHHHHHHHHHcCCC
Confidence            99999999999998 99998531           11122222222111         11233457889999999999999


Q ss_pred             cCCCCCHHHHHcC
Q 005958          385 PSKRISCLDALRH  397 (667)
Q Consensus       385 P~kRpSa~elL~H  397 (667)
                      |++|||+.|+++|
T Consensus       292 p~~Rps~~ell~~  304 (316)
T 2xir_A          292 PSQRPTFSELVEH  304 (316)
T ss_dssp             GGGSCCHHHHHHH
T ss_pred             hhhCcCHHHHHHH
Confidence            9999999999986

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=2.2e-40  Score=350.30  Aligned_cols=263  Identities=16%  Similarity=0.199  Sum_probs=188.3

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHH-HHHHHhhccCCC
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIE-VLKKLVRRRLMY  154 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~-iL~~L~~~~~~~  154 (667)
                      ..+.+..++|++.+.||+|+||    .||+|.+..     +++.||||++....   ......+|+. +++.+      .
T Consensus        15 ~~~~~~~~~y~~~~~lg~G~~g----~Vy~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~------~   79 (327)
T 3aln_A           15 QHWDFTAEDLKDLGEIGRGAYG----SVNKMVHKP-----SGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSS------D   79 (327)
T ss_dssp             EEECCCSCSEEC-CEEEECSSE----EEEEEEETT-----TTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSC------C
T ss_pred             HhcccCHHHhhehheeccCCCE----EEEEEEEcC-----CCCEEEEEEeecccCchHHHHHHHHHHHHHHcC------C
Confidence            4566778999999999999999    999999987     79999999997532   2334456665 34444      6


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      ||||+++++++.     ..+..++||| |+++ +|.+++......    ....+++                    ..++
T Consensus        80 h~niv~~~~~~~-----~~~~~~lv~e-~~~~-~l~~~~~~~~~~----~~~~~~~--------------------~~~~  128 (327)
T 3aln_A           80 CPYIVQFYGALF-----REGDCWICME-LMST-SFDKFYKYVYSV----LDDVIPE--------------------EILG  128 (327)
T ss_dssp             CTTBCCEEEEEE-----CSSEEEEEEC-CCSE-EHHHHHHHHHHT----TCCCCCH--------------------HHHH
T ss_pred             CCcEeeeeeEEE-----eCCceEEEEe-ecCC-ChHHHHHHHHhh----hcccCcH--------------------HHHH
Confidence            999999999999     7789999999 9997 999888742100    0013443                    5678


Q ss_pred             HHHHHHHHHHHHHHHC-CCcccCCCCCcEEEcCCCCeEEEeeecccccccC--------CCCCCCCccccc---CCCCCC
Q 005958          235 LLMRDLLIGVNYLHSH-GLAHTELRLENVHISPVDRHIKVGILGNAADFYE--------DGPNNSSPDSNM---DRRQMM  302 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~-gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~--------~~~~Y~APE~l~---~~~~ys  302 (667)
                      .++.|++.||.|||++ ||+||||||+|||++. ++.+||+|||++.....        +.+.|+|||++.   ....++
T Consensus       129 ~i~~~i~~~l~~lH~~~~ivH~dlkp~NIll~~-~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~  207 (327)
T 3aln_A          129 KITLATVKALNHLKENLKIIHRDIKPSNILLDR-SGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSASRQGYD  207 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCSCCCGGGEEEET-TTEEEECCCSSSCC------------------------------CC
T ss_pred             HHHHHHHHHHHHHhccCCEeECCCCHHHEEEcC-CCCEEEccCCCceecccccccccCCCCccccCceeeccccCcCCCC
Confidence            8999999999999999 9999999999999998 89999999999976543        236799999663   455689


Q ss_pred             chhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhh
Q 005958          303 IAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLA  382 (667)
Q Consensus       303 ~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~  382 (667)
                      .++|||||||++|+|++|+.||.......              +.+........+  .........+++++.+||.+||+
T Consensus       208 ~~~Di~slG~il~~l~~g~~pf~~~~~~~--------------~~~~~~~~~~~~--~~~~~~~~~~~~~l~~li~~~l~  271 (327)
T 3aln_A          208 VRSDVWSLGITLYELATGRFPYPKWNSVF--------------DQLTQVVKGDPP--QLSNSEEREFSPSFINFVNLCLT  271 (327)
T ss_dssp             SHHHHHHHHHHHHHHHHSCCCSSCC---------------------CCCCCSCCC--CCCCCSSCCCCHHHHHHHHHHTC
T ss_pred             chhhHHHHHHHHHHHHHCCCCCCCcchHH--------------HHHHHHhcCCCC--CCCCcccccCCHHHHHHHHHHhh
Confidence            99999999999999999999996321110              000011111000  00111234578999999999999


Q ss_pred             cCcCCCCCHHHHHcCCCCCCCC
Q 005958          383 TKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       383 ~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      .||++|||+.++++||||....
T Consensus       272 ~dp~~Rps~~ell~hp~~~~~~  293 (327)
T 3aln_A          272 KDESKRPKYKELLKHPFILMYE  293 (327)
T ss_dssp             SSGGGSCCHHHHTTSHHHHHHH
T ss_pred             CChhhCcCHHHHHhChHHHHhH
Confidence            9999999999999999997644

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=1.4e-40  Score=352.10  Aligned_cols=264  Identities=21%  Similarity=0.201  Sum_probs=202.2

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      +..++|++.+.||+|+||    .||+|++.. .+..+++.||||++...  ...+.+.+|++++++++      ||||++
T Consensus        20 ~~~~~y~~~~~lg~G~~g----~V~~~~~~~-~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~------h~~i~~   88 (327)
T 3lxl_A           20 FEERHLKYISQLGKGNFG----SVELCRYDP-LGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALH------SDFIVK   88 (327)
T ss_dssp             CCGGGEEEEEEEEEETTE----EEEEEEECT-TSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCC------CTTBCC
T ss_pred             hchhhhhhhhhccCCCCe----EEEEEEecc-CCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcC------CCceeE
Confidence            556899999999999999    999999532 11127899999999763  23355789999999994      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++...   +...+|+||| |+++|+|.+++....        ..+++                    ..++.++.||
T Consensus        89 ~~~~~~~~---~~~~~~lv~e-~~~~~~L~~~l~~~~--------~~~~~--------------------~~~~~i~~qi  136 (327)
T 3lxl_A           89 YRGVSYGP---GRQSLRLVME-YLPSGCLRDFLQRHR--------ARLDA--------------------SRLLLYSSQI  136 (327)
T ss_dssp             EEEEEECS---SSCEEEEEEE-CCTTCBHHHHHHHHG--------GGCCH--------------------HHHHHHHHHH
T ss_pred             EEEEEecC---CCceEEEEEe-ecCCCCHHHHHHhcc--------cCCCH--------------------HHHHHHHHHH
Confidence            99998744   6678999999 999999999998642        13444                    4578899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC------------CCCCCcccccCCCCCCchhhHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG------------PNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~------------~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      +.||.|||++||+||||||+|||++. ++.+||+|||++.......            +.|+|||++. ...++.++|||
T Consensus       137 ~~al~~lH~~~ivH~Dikp~NIl~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~  214 (327)
T 3lxl_A          137 CKGMEYLGSRRCVHRDLAARNILVES-EAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLS-DNIFSRQSDVW  214 (327)
T ss_dssp             HHHHHHHHHTTEECSCCSGGGEEEEE-TTEEEECCGGGCEECCTTCSEEECSSCCCSCGGGSCHHHHH-HCEEEHHHHHH
T ss_pred             HHHHHHHHhCCccCCCCChhhEEECC-CCCEEEcccccceecccCCccceeeccCCccccccCHHHhc-cCCCChHHhHH
Confidence            99999999999999999999999998 8999999999998654322            3499999654 45589999999


Q ss_pred             HHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCC
Q 005958          309 CVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  388 (667)
Q Consensus       309 SLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kR  388 (667)
                      ||||++|+|++|..||...............................      ..+....+++++.+||.+||+.||++|
T Consensus       215 slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~li~~~l~~dP~~R  288 (327)
T 3lxl_A          215 SFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELLEEGQ------RLPAPPACPAEVHELMKLCWAPSPQDR  288 (327)
T ss_dssp             HHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHHHHTTC------CCCCCTTCCHHHHHHHHHHTCSSGGGS
T ss_pred             HHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHHhhccc------CCCCCCcccHHHHHHHHHHcCCChhhC
Confidence            99999999999999987433222111111111112222222222111      123345788999999999999999999


Q ss_pred             CCHHHHHcC
Q 005958          389 ISCLDALRH  397 (667)
Q Consensus       389 pSa~elL~H  397 (667)
                      ||+.|+++|
T Consensus       289 ps~~ell~~  297 (327)
T 3lxl_A          289 PSFSALGPQ  297 (327)
T ss_dssp             CCHHHHHHH
T ss_pred             cCHHHHHHH
Confidence            999999654

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=6.6e-40  Score=339.58  Aligned_cols=247  Identities=14%  Similarity=0.171  Sum_probs=194.9

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhH---------HHHHHHHHHHHHHhhc
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQ---------RRGRRAIEVLKKLVRR  150 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~---------~~~~rEi~iL~~L~~~  150 (667)
                      ...+..++|++.+.||+|+||    .||+|++..     +++.||+|++......         +.+.+|+.++++++  
T Consensus        13 ~~~~~~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~--   81 (287)
T 4f0f_A           13 LPTLADNEIEYEKQIGKGGFG----LVHKGRLVK-----DKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLN--   81 (287)
T ss_dssp             CCBCCSTTEEEEEECCCCSSS----CEEEEEETT-----TCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCC--
T ss_pred             hhhhhhccceehhccccCCce----eEEEEEEcC-----CceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCC--
Confidence            344667899999999999999    999999987     7999999998642211         56789999999994  


Q ss_pred             cCCCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccH
Q 005958          151 RLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQL  230 (667)
Q Consensus       151 ~~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~  230 (667)
                          ||||+++++++.     +..  ++||| |+++|+|.+++....        ..+++                    
T Consensus        82 ----h~~i~~~~~~~~-----~~~--~lv~e-~~~~~~L~~~l~~~~--------~~~~~--------------------  121 (287)
T 4f0f_A           82 ----HPNIVKLYGLMH-----NPP--RMVME-FVPCGDLYHRLLDKA--------HPIKW--------------------  121 (287)
T ss_dssp             ----CTTBCCEEEEET-----TTT--EEEEE-CCTTCBHHHHHHCTT--------SCCCH--------------------
T ss_pred             ----CCCchhhheeec-----CCC--eEEEE-ecCCCCHHHHHhccc--------CCccH--------------------
Confidence                999999999987     333  69999 999999999987643        13444                    


Q ss_pred             HHHHHHHHHHHHHHHHHHHCC--CcccCCCCCcEEEcCCCCe-----EEEeeecccccccCC------CCCCCCccccc-
Q 005958          231 RLIRLLMRDLLIGVNYLHSHG--LAHTELRLENVHISPVDRH-----IKVGILGNAADFYED------GPNNSSPDSNM-  296 (667)
Q Consensus       231 ~~i~~i~~QIl~aL~yLHs~g--IvHrDLKPeNILl~~~~~~-----vKL~DFGlA~~~~~~------~~~Y~APE~l~-  296 (667)
                      ..++.++.||+.||.|||++|  |+||||||+|||++. ++.     +||+|||++......      .+.|+|||++. 
T Consensus       122 ~~~~~~~~~l~~~l~~lH~~~~~ivH~dikp~Nil~~~-~~~~~~~~~kl~Dfg~~~~~~~~~~~~~g~~~y~aPE~~~~  200 (287)
T 4f0f_A          122 SVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQS-LDENAPVCAKVADFGLSQQSVHSVSGLLGNFQWMAPETIGA  200 (287)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSSCCBCSCCSGGGEEESC-CCTTCSCCEEECCCTTCBCCSSCEECCCCCCTTSCGGGSSC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCeecCCCCcceEEEec-cCCCCceeEEeCCCCccccccccccccCCCccccCchhhcc
Confidence            457889999999999999999  999999999999987 554     999999999755432      37899999663 


Q ss_pred             CCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHH
Q 005958          297 DRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNL  376 (667)
Q Consensus       297 ~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dL  376 (667)
                      ....++.++|||||||++|+|++|+.||...          ...........   .....     .......+++++.+|
T Consensus       201 ~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~----------~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~l~~l  262 (287)
T 4f0f_A          201 EEESYTEKADTYSFAMILYTILTGEGPFDEY----------SYGKIKFINMI---REEGL-----RPTIPEDCPPRLRNV  262 (287)
T ss_dssp             SSCEECHHHHHHHHHHHHHHHHHSSCTTTTC----------CCCHHHHHHHH---HHSCC-----CCCCCTTSCHHHHHH
T ss_pred             CCCCcCchhhHHHHHHHHHHHHcCCCCCccc----------cccHHHHHHHH---hccCC-----CCCCCcccCHHHHHH
Confidence            3455789999999999999999999998521          11111111111   11111     122345678999999


Q ss_pred             HHHhhhcCcCCCCCHHHHHc
Q 005958          377 LSLLLATKPSKRISCLDALR  396 (667)
Q Consensus       377 I~~~L~~DP~kRpSa~elL~  396 (667)
                      |.+||+.||++|||++|+++
T Consensus       263 i~~~l~~dp~~Rps~~~ll~  282 (287)
T 4f0f_A          263 IELCWSGDPKKRPHFSYIVK  282 (287)
T ss_dssp             HHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHhcCChhhCcCHHHHHH
Confidence            99999999999999999986

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=1.5e-40  Score=350.12  Aligned_cols=268  Identities=16%  Similarity=0.187  Sum_probs=205.7

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      .+++..++|++.+.||+|+||    .||+|.+.......+++.||||++....   ....+.+|+.+++.+      .||
T Consensus        19 ~~~~~~~~y~~~~~lg~G~~g----~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l------~h~   88 (322)
T 1p4o_A           19 EWEVAREKITMSRELGQGSFG----MVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEF------NCH   88 (322)
T ss_dssp             TTBCCGGGEEEEEEEEECSSS----EEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGC------CCT
T ss_pred             hhcchhhheeeeeEeccCCce----EEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhc------CCC
Confidence            445667899999999999999    9999998732222267899999997532   234568899999998      499


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++.     ..+..++||| |+++|+|.+++...+....  .                 ......++...+..+
T Consensus        89 ~i~~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~~~~~--~-----------------~~~~~~~~~~~~~~i  143 (322)
T 1p4o_A           89 HVVRLLGVVS-----QGQPTLVIME-LMTRGDLKSYLRSLRPAMA--N-----------------NPVLAPPSLSKMIQM  143 (322)
T ss_dssp             TBCCEEEEEC-----SSSSCEEEEE-CCTTCBHHHHHHHHHHHHH--H-----------------CTTCCCCCHHHHHHH
T ss_pred             CEeeeEEEEc-----cCCccEEEEE-eCCCCcHHHHHHHhchhhc--c-----------------CCCCCCcCHHHHHHH
Confidence            9999999998     7788999999 9999999999986421000  0                 000012234678889


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchh
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAF  305 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ks  305 (667)
                      +.||+.||.|||++||+||||||+|||++. ++.+||+|||++......           .+.|+|||++. ...++.++
T Consensus       144 ~~qi~~~l~~lH~~~i~H~dikp~NIli~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~  221 (322)
T 1p4o_A          144 AGEIADGMAYLNANKFVHRDLAARNCMVAE-DFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLK-DGVFTTYS  221 (322)
T ss_dssp             HHHHHHHHHHHHHTTCBCSCCSGGGEEECT-TCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHH-HCCCCHHH
T ss_pred             HHHHHHHHHHHHHCCCccCCCccceEEEcC-CCeEEECcCccccccccccccccccCCCCCCCccChhhhc-cCCCCchh
Confidence            999999999999999999999999999998 899999999999755332           24699999654 45689999


Q ss_pred             hHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          306 DMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       306 DIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      |||||||++|+|++ |.+||..            .........+.   ...      .......+++++.+||.+||+.|
T Consensus       222 Di~slG~il~el~~~g~~p~~~------------~~~~~~~~~~~---~~~------~~~~~~~~~~~l~~li~~~l~~d  280 (322)
T 1p4o_A          222 DVWSFGVVLWEIATLAEQPYQG------------LSNEQVLRFVM---EGG------LLDKPDNCPDMLFELMRMCWQYN  280 (322)
T ss_dssp             HHHHHHHHHHHHHHTSCCTTTT------------SCHHHHHHHHH---TTC------CCCCCTTCCHHHHHHHHHHTCSS
T ss_pred             hHHHHHHHHHHHHhcCCCcccc------------CCHHHHHHHHH---cCC------cCCCCCCCCHHHHHHHHHHcCCC
Confidence            99999999999999 8898852            22222222221   111      11233567889999999999999


Q ss_pred             cCCCCCHHHHHcC------CCCCCCCC
Q 005958          385 PSKRISCLDALRH------PFLCGPRW  405 (667)
Q Consensus       385 P~kRpSa~elL~H------Pwf~~~~~  405 (667)
                      |++|||+.|+++|      ++|++..+
T Consensus       281 p~~Rps~~e~l~~L~~~~~~~~~~~~~  307 (322)
T 1p4o_A          281 PKMRPSFLEIISSIKEEMEPGFREVSF  307 (322)
T ss_dssp             GGGSCCHHHHHHHHGGGSCTTHHHHCS
T ss_pred             cccCcCHHHHHHHHHHhhccCCccccc
Confidence            9999999999986      66655543

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=2e-40  Score=356.83  Aligned_cols=263  Identities=12%  Similarity=0.062  Sum_probs=194.2

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhh---------ccCC
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVR---------RRLM  153 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~---------~~~~  153 (667)
                      ...++|++.+.||+|+||    +||+|.+........++.||||++....  ....+|+++++++.+         ...+
T Consensus        32 ~~~~~y~~~~~lG~G~~g----~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~e~~~~~~~~~~~~~~e~~~~~~l  105 (364)
T 3op5_A           32 MAAAAWKVGLPIGQGGFG----CIYLADMNSSESVGSDAPCVVKVEPSDN--GPLFTELKFYQRAAKPEQIQKWIRTRKL  105 (364)
T ss_dssp             TTCCEEEEEEECCCC-CC----EEEEEEECCSSCCCTTCSEEEEEEETTC--HHHHHHHHHHHHHCCHHHHHHHHHHTTC
T ss_pred             cCCCeEEEEEEEecCCCe----EEEEeeecCccccccccceEEEEeeccc--hhHHHHHHHHHhhhhhHHHHHHHHHhhc
Confidence            445799999999999999    9999999874444457899999987543  234566666665542         2345


Q ss_pred             CCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHH
Q 005958          154 YHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLI  233 (667)
Q Consensus       154 ~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i  233 (667)
                      .||||+++++++.... ......||||| |+ +|+|.+++....        ..+++                    ..+
T Consensus       106 ~h~~iv~~~~~~~~~~-~~~~~~~lv~e-~~-g~~L~~~~~~~~--------~~l~~--------------------~~~  154 (364)
T 3op5_A          106 KYLGVPKYWGSGLHDK-NGKSYRFMIMD-RF-GSDLQKIYEANA--------KRFSR--------------------KTV  154 (364)
T ss_dssp             SCCCSCCEEEEEEEEE-TTEEEEEEEEE-CE-EEEHHHHHHHTT--------SCCCH--------------------HHH
T ss_pred             cCCCCCeEEeeeeecc-CCcceEEEEEe-CC-CCCHHHHHHhcc--------CCCCH--------------------HHH
Confidence            6999999999987331 12367899999 99 779999998742        14554                    457


Q ss_pred             HHHHHHHHHHHHHHHHCCCcccCCCCCcEEEc--CCCCeEEEeeecccccccC----------------CCCCCCCcccc
Q 005958          234 RLLMRDLLIGVNYLHSHGLAHTELRLENVHIS--PVDRHIKVGILGNAADFYE----------------DGPNNSSPDSN  295 (667)
Q Consensus       234 ~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~--~~~~~vKL~DFGlA~~~~~----------------~~~~Y~APE~l  295 (667)
                      +.|+.||+.||.|||++||+||||||+|||++  . ++.+||+|||+|+.+..                +.+.|+|||++
T Consensus       155 ~~i~~qi~~~l~~lH~~~iiHrDlkp~Nill~~~~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  233 (364)
T 3op5_A          155 LQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKN-PDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAH  233 (364)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECCCCCGGGEEEESSC-TTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCeEEecCCHHHEEEecCC-CCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHh
Confidence            88999999999999999999999999999998  5 78999999999975432                44789999955


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhh-ccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHH
Q 005958          296 MDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFL-TKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGW  374 (667)
Q Consensus       296 ~~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~-~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~  374 (667)
                      . ...|+.++|||||||++|||++|+.||.+......... ........+.+.+...+.            ...+++++.
T Consensus       234 ~-~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~  300 (364)
T 3op5_A          234 N-GVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFP------------AANAPGEIA  300 (364)
T ss_dssp             T-TCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHCHHHHHHHHSC------------TTCCCHHHH
T ss_pred             C-CCCCCchhhHHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHhhhhHHHHHHHhcc------------cccCHHHHH
Confidence            4 45599999999999999999999999974211000000 000000011111111110            135678999


Q ss_pred             HHHHHhhhcCcCCCCCHHHHHc
Q 005958          375 NLLSLLLATKPSKRISCLDALR  396 (667)
Q Consensus       375 dLI~~~L~~DP~kRpSa~elL~  396 (667)
                      +||..||..||++||++.++++
T Consensus       301 ~li~~cl~~~p~~RP~~~~l~~  322 (364)
T 3op5_A          301 KYMETVKLLDYTEKPLYENLRD  322 (364)
T ss_dssp             HHHHHHHTCCTTCCCCHHHHHH
T ss_pred             HHHHHHhcCCCCCCCCHHHHHH
Confidence            9999999999999999999875

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=6.9e-40  Score=347.03  Aligned_cols=267  Identities=15%  Similarity=0.155  Sum_probs=204.9

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCC
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      ....+..++|++.+.||+|+||    .||+|.+...+.....+.||+|++...   ...+.+.+|+.+++.+.     .|
T Consensus        39 ~~~~~~~~~~~~~~~lG~G~~g----~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~h  109 (333)
T 2i1m_A           39 EKWEFPRNNLQFGKTLGAGAFG----KVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLG-----QH  109 (333)
T ss_dssp             GGGBCCTTSEEEEEEEEECSSE----EEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHC-----CC
T ss_pred             ccccCCHHHceeeeEeccCCCc----ceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhc-----CC
Confidence            3456778999999999999999    999999987544445568999999763   23456789999999994     49


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      |||+++++++.     ..+.+++||| |+++|+|.+++...........  .+             .-....++...+..
T Consensus       110 ~~iv~~~~~~~-----~~~~~~lv~e-~~~~g~L~~~l~~~~~~~~~~~--~~-------------~~~~~~~~~~~~~~  168 (333)
T 2i1m_A          110 ENIVNLLGACT-----HGGPVLVITE-YCCYGDLLNFLRRKSRVLETDP--AF-------------AIANSTASTRDLLH  168 (333)
T ss_dssp             TTBCCEEEEEC-----SSSSCEEEEE-CCTTEEHHHHHHHHHHHHSCC----------------------CCCCHHHHHH
T ss_pred             CCeeeEEEEEe-----cCCceEEEEe-cCCCCcHHHHHHHhcccccccc--cc-------------cccccccCHHHHHH
Confidence            99999999998     7788999999 9999999999986431100000  00             00011234467888


Q ss_pred             HHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-----------CCCCCcccccCCCCCCch
Q 005958          236 LMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-----------PNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       236 i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-----------~~Y~APE~l~~~~~ys~k  304 (667)
                      ++.||+.||.|||++||+||||||+|||++. ++.+||+|||++.......           +.|+|||++. ...++.+
T Consensus       169 ~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~  246 (333)
T 2i1m_A          169 FSSQVAQGMAFLASKNCIHRDVAARNVLLTN-GHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIF-DCVYTVQ  246 (333)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGCEEEG-GGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHH-HCCCCHH
T ss_pred             HHHHHHHHHHHHhcCCcccCCcccceEEECC-CCeEEECccccccccccccceeecCCCCCCccccCHHHhc-cCCCChH
Confidence            9999999999999999999999999999998 8999999999998654322           3699999655 4568999


Q ss_pred             hhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhc
Q 005958          305 FDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLAT  383 (667)
Q Consensus       305 sDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~  383 (667)
                      +|||||||++|||++ |.+||.+..           ........+.....         .......++++.+||.+||+.
T Consensus       247 ~Di~slG~il~el~t~g~~p~~~~~-----------~~~~~~~~~~~~~~---------~~~~~~~~~~l~~li~~~l~~  306 (333)
T 2i1m_A          247 SDVWSYGILLWEIFSLGLNPYPGIL-----------VNSKFYKLVKDGYQ---------MAQPAFAPKNIYSIMQACWAL  306 (333)
T ss_dssp             HHHHHHHHHHHHHTTTSCCSSTTCC-----------SSHHHHHHHHHTCC---------CCCCTTCCHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHcCCCCCCcccc-----------hhHHHHHHHhcCCC---------CCCCCCCCHHHHHHHHHHhcc
Confidence            999999999999998 999986321           11222222222111         112345678999999999999


Q ss_pred             CcCCCCCHHHHHcC
Q 005958          384 KPSKRISCLDALRH  397 (667)
Q Consensus       384 DP~kRpSa~elL~H  397 (667)
                      ||++|||+.|++++
T Consensus       307 ~p~~Rps~~~l~~~  320 (333)
T 2i1m_A          307 EPTHRPTFQQICSF  320 (333)
T ss_dssp             SGGGSCCHHHHHHH
T ss_pred             ChhhCcCHHHHHHH
Confidence            99999999999873

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=2.5e-40  Score=351.00  Aligned_cols=248  Identities=14%  Similarity=0.123  Sum_probs=194.8

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      ..+..++|++.+.||+|+||    +||+|++...+. ....+||+|.+...   ...+.+.+|+.++++++      |||
T Consensus        10 ~~l~~~~y~~~~~lG~G~~g----~Vy~~~~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~------h~~   78 (327)
T 3poz_A           10 RILKETEFKKIKVLGSGAFG----TVYKGLWIPEGE-KVKIPVAIKELREATSPKANKEILDEAYVMASVD------NPH   78 (327)
T ss_dssp             EECCGGGEEEEEEEEEETTE----EEEEEEECC-----CCEEEEEEEC-------CHHHHHHHHHHHHHCC------BTT
T ss_pred             hhcCHHHcccceEEeeCCCe----EEEEEEEcCCCc-eEEEEEEEeecccccCHHHHHHHHHHHHHHHhCC------CCC
Confidence            34566899999999999999    999999886211 01234688887542   23456789999999995      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     .. ..++||| |+.+|+|.+++....        ..+++                    ..++.++
T Consensus        79 iv~~~~~~~-----~~-~~~~v~e-~~~~g~L~~~l~~~~--------~~~~~--------------------~~~~~~~  123 (327)
T 3poz_A           79 VCRLLGICL-----TS-TVQLITQ-LMPFGCLLDYVREHK--------DNIGS--------------------QYLLNWC  123 (327)
T ss_dssp             BCCEEEEEE-----SS-SEEEEEE-CCTTCBHHHHHHHST--------TSCCH--------------------HHHHHHH
T ss_pred             EeEEEEEEe-----cC-CeEEEEE-ecCCCcHHHHHHhcC--------CCCCH--------------------HHHHHHH
Confidence            999999998     43 4789999 999999999998743        13444                    4578899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-----------CCCCCcccccCCCCCCchhh
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-----------PNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-----------~~Y~APE~l~~~~~ys~ksD  306 (667)
                      .||+.||.|||++||+||||||+|||++. ++.+||+|||+|+......           +.|+|||.+. ...|+.++|
T Consensus       124 ~qi~~~l~~LH~~~ivH~Dikp~NIll~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~~D  201 (327)
T 3poz_A          124 VQIAKGMNYLEDRRLVHRDLAARNVLVKT-PQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESIL-HRIYTHQSD  201 (327)
T ss_dssp             HHHHHHHHHHHHTTCCCSCCCGGGEEEEE-TTEEEECCTTHHHHHTTTCC-------CCCGGGSCHHHHH-HCCCCHHHH
T ss_pred             HHHHHHHHHHhhCCeeCCCCChheEEECC-CCCEEEccCcceeEccCCcccccccCCCccccccChHHhc-cCCCCchhh
Confidence            99999999999999999999999999998 8999999999998654332           3699999655 456899999


Q ss_pred             HHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCc
Q 005958          307 MRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       307 IWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      ||||||++|||++ |++||.            +.....+...+....         ..+....++.++.+||.+||+.||
T Consensus       202 i~slG~il~ellt~g~~p~~------------~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~li~~~l~~~p  260 (327)
T 3poz_A          202 VWSYGVTVWELMTFGSKPYD------------GIPASEISSILEKGE---------RLPQPPICTIDVYMIMVKCWMIDA  260 (327)
T ss_dssp             HHHHHHHHHHHHTTSCCTTT------------TCCGGGHHHHHHTTC---------CCCCCTTBCHHHHHHHHHHTCSCG
T ss_pred             hhhhHHHHHHHHhcCCCCcc------------CCCHHHHHHHHHcCC---------CCCCCccCCHHHHHHHHHHcCCCh
Confidence            9999999999999 999985            233333333332211         122345678899999999999999


Q ss_pred             CCCCCHHHHHcC
Q 005958          386 SKRISCLDALRH  397 (667)
Q Consensus       386 ~kRpSa~elL~H  397 (667)
                      ++|||+.|+++|
T Consensus       261 ~~Rps~~ell~~  272 (327)
T 3poz_A          261 DSRPKFRELIIE  272 (327)
T ss_dssp             GGSCCHHHHHHH
T ss_pred             hhCCCHHHHHHH
Confidence            999999999875

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=6.7e-40  Score=338.83  Aligned_cols=248  Identities=15%  Similarity=0.137  Sum_probs=196.7

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      ...+..++|++.+.||+|+||    .||+|.+....  .++..||+|++...   ...+.+.+|+.+++.++      ||
T Consensus         6 ~~~~~~~~y~~~~~lg~G~~g----~Vy~~~~~~~~--~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~------h~   73 (281)
T 3cc6_A            6 QYGIAREDVVLNRILGEGFFG----EVYEGVYTNHK--GEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLD------HP   73 (281)
T ss_dssp             CCSCCGGGEEEEEEEEECSSS----EEEEEEEECTT--CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHC------CT
T ss_pred             cceecccceEEEEEEEecCCe----eEEEeEEcCCC--CCcceEEEEecccccCchHHHHHHHHHHHHHhCC------CC
Confidence            345667899999999999999    99999987521  14567999998763   23456789999999995      99


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++.     + +..|+||| |+++|+|.+++...+        ..+++                    ..+..+
T Consensus        74 ~i~~~~~~~~-----~-~~~~~v~e-~~~~~~L~~~l~~~~--------~~~~~--------------------~~~~~~  118 (281)
T 3cc6_A           74 HIVKLIGIIE-----E-EPTWIIME-LYPYGELGHYLERNK--------NSLKV--------------------LTLVLY  118 (281)
T ss_dssp             TBCCEEEEEC-----S-SSCEEEEE-CCTTCBHHHHHHHHT--------TTCCH--------------------HHHHHH
T ss_pred             CcceEEEEEc-----C-CCCEEEEe-cCCCCCHHHHHHhcc--------ccCCH--------------------HHHHHH
Confidence            9999999986     3 45689999 999999999997643        13444                    457789


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC----------CCCCCCcccccCCCCCCchhh
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED----------GPNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~----------~~~Y~APE~l~~~~~ys~ksD  306 (667)
                      +.||+.||.|||++||+||||||+|||++. ++.+||+|||++......          .+.|+|||++ ....++.++|
T Consensus       119 ~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~D  196 (281)
T 3cc6_A          119 SLQICKAMAYLESINCVHRDIAVRNILVAS-PECVKLGDFGLSRYIEDEDYYKASVTRLPIKWMSPESI-NFRRFTTASD  196 (281)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCCSGGGEEEEE-TTEEEECCCCGGGCC---------CCCCCGGGCCHHHH-HHCCCCHHHH
T ss_pred             HHHHHHHHHHHHHCCcccCCCccceEEECC-CCcEEeCccCCCcccccccccccccCCCCcceeCchhh-ccCCCCchhc
Confidence            999999999999999999999999999998 899999999999865432          1469999955 4556899999


Q ss_pred             HHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCc
Q 005958          307 MRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       307 IWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      ||||||++|+|++ |++||..            .........+....         ..+....+++++.+||.+||..||
T Consensus       197 i~slG~il~~llt~g~~p~~~------------~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~li~~~l~~~p  255 (281)
T 3cc6_A          197 VWMFAVCMWEILSFGKQPFFW------------LENKDVIGVLEKGD---------RLPKPDLCPPVLYTLMTRCWDYDP  255 (281)
T ss_dssp             HHHHHHHHHHHHTTTCCTTTT------------SCGGGHHHHHHHTC---------CCCCCTTCCHHHHHHHHHHTCSSG
T ss_pred             cHHHHHHHHHHHhCCCCCccc------------CChHHHHHHHhcCC---------CCCCCCCCCHHHHHHHHHHccCCc
Confidence            9999999999998 9999852            12222222222111         112334578899999999999999


Q ss_pred             CCCCCHHHHHcC
Q 005958          386 SKRISCLDALRH  397 (667)
Q Consensus       386 ~kRpSa~elL~H  397 (667)
                      ++|||+.|++++
T Consensus       256 ~~Rps~~ell~~  267 (281)
T 3cc6_A          256 SDRPRFTELVCS  267 (281)
T ss_dssp             GGSCCHHHHHHH
T ss_pred             hhCcCHHHHHHH
Confidence            999999999875

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=1.3e-40  Score=352.38  Aligned_cols=261  Identities=16%  Similarity=0.185  Sum_probs=198.0

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcc---hhhHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS---VQAQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~---~~~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      ..+..++|++++.||+|+||    .||+|++....+..+++.||||++..   ......+.+|+.++++++      |||
T Consensus        25 ~~~~~~~y~~~~~lg~G~~g----~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~------h~~   94 (327)
T 2yfx_A           25 KEVPRKNITLIRGLGHGAFG----EVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFN------HQN   94 (327)
T ss_dssp             CBCCGGGCEEEEECC--CSS----CEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCC------CTT
T ss_pred             ccCChhheEEEEEEcCCCCe----eEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCC------CCC
Confidence            34566899999999999999    99999954322233789999999864   233456789999999994      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     ..+..|+||| |+++|+|.+++......+..  ...++                    ...++.++
T Consensus        95 iv~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~~~~~~--~~~~~--------------------~~~~~~i~  146 (327)
T 2yfx_A           95 IVRCIGVSL-----QSLPRFILME-LMAGGDLKSFLRETRPRPSQ--PSSLA--------------------MLDLLHVA  146 (327)
T ss_dssp             BCCEEEEEC-----SSSSCEEEEE-CCTTEEHHHHHHHTSCCSSS--TTSCC--------------------HHHHHHHH
T ss_pred             CCeEEEEEc-----CCCCcEEEEe-cCCCCcHHHHHHhhcccccc--ccccc--------------------HHHHHHHH
Confidence            999999998     6778899999 99999999999875421110  01233                    45678899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcC--CCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCch
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISP--VDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~--~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~k  304 (667)
                      .||+.||.|||++||+||||||+|||++.  .+..+||+|||++......           .+.|+|||++. ...++.+
T Consensus       147 ~qi~~al~~LH~~~i~H~dlkp~NIli~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~  225 (327)
T 2yfx_A          147 RDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFM-EGIFTSK  225 (327)
T ss_dssp             HHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHC------CCGGGSCGGGCCHHHHH-HCCCCHH
T ss_pred             HHHHHHHHHHhhCCeecCcCCHhHEEEecCCCcceEEECccccccccccccccccCCCcCCCcceeCHhHhc-CCCCCch
Confidence            99999999999999999999999999984  1457999999998754322           24699999654 4568999


Q ss_pred             hhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhc
Q 005958          305 FDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLAT  383 (667)
Q Consensus       305 sDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~  383 (667)
                      +|||||||++|+|++ |.+||..            .......+.+..   ..      .......+++++.+||.+||+.
T Consensus       226 ~Di~slG~il~ellt~g~~p~~~------------~~~~~~~~~~~~---~~------~~~~~~~~~~~l~~li~~~l~~  284 (327)
T 2yfx_A          226 TDTWSFGVLLWEIFSLGYMPYPS------------KSNQEVLEFVTS---GG------RMDPPKNCPGPVYRIMTQCWQH  284 (327)
T ss_dssp             HHHHHHHHHHHHHHTTSCCSSTT------------CCHHHHHHHHHT---TC------CCCCCTTCCHHHHHHHHHHTCS
T ss_pred             hhHHHHHHHHHHHHcCCCCCCCC------------cCHHHHHHHHhc---CC------CCCCCCCCCHHHHHHHHHHhcC
Confidence            999999999999998 9999852            222222222211   11      1123356788999999999999


Q ss_pred             CcCCCCCHHHHHcCCCCC
Q 005958          384 KPSKRISCLDALRHPFLC  401 (667)
Q Consensus       384 DP~kRpSa~elL~HPwf~  401 (667)
                      ||++|||+.++++|.|+.
T Consensus       285 dp~~Rps~~~ll~~l~~~  302 (327)
T 2yfx_A          285 QPEDRPNFAIILERIEYC  302 (327)
T ss_dssp             SGGGSCCHHHHHHHHHHH
T ss_pred             ChhhCcCHHHHHHHHHHH
Confidence            999999999999997763

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=3e-40  Score=337.80  Aligned_cols=243  Identities=16%  Similarity=0.162  Sum_probs=197.5

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      .+..++|++.+.||+|+||    .||+|.+.      +++.||+|++.... ..+.+.+|+++++.++      ||||++
T Consensus         4 ~i~~~~y~~~~~lg~G~~g----~V~~~~~~------~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~   67 (267)
T 3t9t_A            4 VIDPSELTFVQEIGSGQFG----LVHLGYWL------NKDKVAIKTIREGAMSEEDFIEEAEVMMKLS------HPKLVQ   67 (267)
T ss_dssp             BCCGGGEEEEEEEEEETTE----EEEEEEET------TTEEEEEEEECTTTBCHHHHHHHHHHHHTCC------CTTBCC
T ss_pred             EEchhheeeeeEecCCCce----eEEEEEec------CCCeEEEEEccccCCCHHHHHHHHHHHHhCC------CCCEee
Confidence            4556899999999999999    99999987      36889999998643 3456789999999994      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     ..+..++||| |+++|+|.+++....        ..+++                    ..+..++.||
T Consensus        68 ~~~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~~--------~~~~~--------------------~~~~~~~~~i  113 (267)
T 3t9t_A           68 LYGVCL-----EQAPICLVTE-FMEHGCLSDYLRTQR--------GLFAA--------------------ETLLGMCLDV  113 (267)
T ss_dssp             EEEEEC-----SSSSCEEEEC-CCTTCBHHHHHHHTT--------TCCCH--------------------HHHHHHHHHH
T ss_pred             EEEEEc-----cCCCeEEEEe-CCCCCcHHHHHhhCc--------ccCCH--------------------HHHHHHHHHH
Confidence            999998     6788999999 999999999998643        13444                    4578899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC----------CCCCCCcccccCCCCCCchhhHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED----------GPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~----------~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      +.||.|||++||+||||||+||+++. ++.+||+|||++......          .+.|+|||++. ...++.++|||||
T Consensus       114 ~~~l~~lH~~~i~H~dl~p~Nili~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~sl  191 (267)
T 3t9t_A          114 CEGMAYLEEACVIHRDLAARNCLVGE-NQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFS-FSRYSSKSDVWSF  191 (267)
T ss_dssp             HHHHHHHHHTTCCCSSCCGGGEEECG-GGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHH-HCCCCHHHHHHHH
T ss_pred             HHHHHHHHhCCcccCCCchheEEECC-CCCEEEcccccccccccccccccccccccccccChhhhc-CCCccchhchhhh
Confidence            99999999999999999999999998 899999999999765321          14699999654 4568999999999


Q ss_pred             HHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          311 GFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       311 GviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      ||++|+|++ |.+||..            .........+.   ....      .......++++.+||.+||+.||++||
T Consensus       192 G~il~~l~~~g~~p~~~------------~~~~~~~~~i~---~~~~------~~~~~~~~~~l~~li~~~l~~~p~~Rp  250 (267)
T 3t9t_A          192 GVLMWEVFSEGKIPYEN------------RSNSEVVEDIS---TGFR------LYKPRLASTHVYQIMNHCWRERPEDRP  250 (267)
T ss_dssp             HHHHHHHHTTSCCTTTT------------CCHHHHHHHHH---TTCC------CCCCTTSCHHHHHHHHHHTCSSGGGSC
T ss_pred             HHHHHHHhccCCCCCCC------------CCHHHHHHHHh---cCCc------CCCCccCcHHHHHHHHHHccCChhhCc
Confidence            999999999 8999852            22222222221   1111      112345688999999999999999999


Q ss_pred             CHHHHHcC
Q 005958          390 SCLDALRH  397 (667)
Q Consensus       390 Sa~elL~H  397 (667)
                      |+.+++++
T Consensus       251 s~~~ll~~  258 (267)
T 3t9t_A          251 AFSRLLRQ  258 (267)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            99999874

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=9.2e-40  Score=344.99  Aligned_cols=262  Identities=19%  Similarity=0.225  Sum_probs=199.4

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      .+....|++++.||+|+||    +||+|.... .+..+++.||||++...   ...+.+.+|++++++++      ||||
T Consensus        27 ~~~~r~~~~~~~lG~G~~g----~V~~~~~~~-~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~------h~~i   95 (318)
T 3lxp_A           27 VFHKRYLKKIRDLGEGHFG----KVSLYCYDP-TNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLY------HEHI   95 (318)
T ss_dssp             BCCGGGEEEEEEEEECSSE----EEEEEEECS-CC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCC------CTTB
T ss_pred             eecHHHHhhhheecCCCCe----EEEEEEEcc-CCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCC------Ccch
Confidence            3444445999999999999    999987643 12237899999999864   23456789999999995      9999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      +++++++...   ....+++||| |+++|+|.+++...          .+++                    ..++.++.
T Consensus        96 v~~~~~~~~~---~~~~~~lv~e-~~~~~~L~~~l~~~----------~~~~--------------------~~~~~i~~  141 (318)
T 3lxp_A           96 IKYKGCCEDA---GAASLQLVME-YVPLGSLRDYLPRH----------SIGL--------------------AQLLLFAQ  141 (318)
T ss_dssp             CCEEEEEEET---TTTEEEEEEC-CCTTCBHHHHGGGS----------CCCH--------------------HHHHHHHH
T ss_pred             hhEEEEEecC---CCceEEEEEe-cccCCcHHHHHhhC----------CCCH--------------------HHHHHHHH
Confidence            9999999844   4678999999 99999999999764          2444                    45788999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC------------CCCCCcccccCCCCCCchhh
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG------------PNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~------------~~Y~APE~l~~~~~ys~ksD  306 (667)
                      ||+.||.|||++||+||||||+|||++. ++.+||+|||++.......            +.|+|||++. ...++.++|
T Consensus       142 ~l~~~l~~LH~~~ivH~Dikp~Nil~~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~D  219 (318)
T 3lxp_A          142 QICEGMAYLHAQHYIHRDLAARNVLLDN-DRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLK-EYKFYYASD  219 (318)
T ss_dssp             HHHHHHHHHHHTTEECSCCSGGGEEECT-TCCEEECCGGGCEECCTTCSEEEC---CCCCGGGCCHHHHH-HCEEEHHHH
T ss_pred             HHHHHHHHHHhCCccCCCCchheEEEcC-CCCEEECCccccccccccccccccccCCCCCceeeChHHhc-CCCCCcHHH
Confidence            9999999999999999999999999998 8999999999998765432            3499999654 445889999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          307 MRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       307 IWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      ||||||++|+|++|..||........................ ......     ...+....+++++.+||.+||+.||+
T Consensus       220 i~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~l~~li~~~l~~dP~  293 (318)
T 3lxp_A          220 VWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLT-ELLERG-----ERLPRPDKCPAEVYHLMKNCWETEAS  293 (318)
T ss_dssp             HHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHH-HHHHTT-----CCCCCCTTCCHHHHHHHHHHTCSSGG
T ss_pred             HHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHH-HHHhcc-----cCCCCCccccHHHHHHHHHHcCCCcc
Confidence            999999999999999998743222211111111111111111 111111     11233456789999999999999999


Q ss_pred             CCCCHHHHHc
Q 005958          387 KRISCLDALR  396 (667)
Q Consensus       387 kRpSa~elL~  396 (667)
                      +|||+.|+++
T Consensus       294 ~Rps~~ell~  303 (318)
T 3lxp_A          294 FRPTFENLIP  303 (318)
T ss_dssp             GSCCHHHHHH
T ss_pred             cCcCHHHHHH
Confidence            9999999985

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=8e-40  Score=347.56  Aligned_cols=268  Identities=17%  Similarity=0.163  Sum_probs=203.3

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCC--CCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCC
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSN--SPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLM  153 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~--~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~  153 (667)
                      ..+.+..++|++.+.||+|+||    .||+|.+....  ...++..||||++....   ..+.+.+|+.+++.+.     
T Consensus        28 ~~~~~~~~~y~~~~~lG~G~~g----~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----   98 (334)
T 2pvf_A           28 PKWEFPRDKLTLGKPLGEGAFG----QVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIG-----   98 (334)
T ss_dssp             TTTBCCGGGEEEEEEEEECSSC----EEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHC-----
T ss_pred             ccccCCHhHeEEeeEEeecCce----eEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhh-----
Confidence            3455667999999999999999    99999986321  12367899999997532   3356789999999995     


Q ss_pred             CCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHH
Q 005958          154 YHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLI  233 (667)
Q Consensus       154 ~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i  233 (667)
                      .||||+++++++.     ..+.+|+||| |+++|+|.+++........ .  ..+.          ....+...++...+
T Consensus        99 ~hp~iv~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~~~~~-~--~~~~----------~~~~~~~~~~~~~~  159 (334)
T 2pvf_A           99 KHKNIINLLGACT-----QDGPLYVIVE-YASKGNLREYLRARRPPGM-E--YSYD----------INRVPEEQMTFKDL  159 (334)
T ss_dssp             CCTTBCCEEEEEC-----SSSCCEEEEE-CCTTCBHHHHHHTTSCTTC-C--SCC------------------CCCHHHH
T ss_pred             cCCCEeeEEEEEc-----cCCceEEEEE-CCCCCcHHHHHHHhccccc-c--cccc----------ccccccccCCHHHH
Confidence            5999999999998     7788999999 9999999999987542110 0  0000          00001122445678


Q ss_pred             HHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-----------CCCCCcccccCCCCCC
Q 005958          234 RLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-----------PNNSSPDSNMDRRQMM  302 (667)
Q Consensus       234 ~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-----------~~Y~APE~l~~~~~ys  302 (667)
                      +.++.||+.||.|||++||+||||||+|||++. ++.+||+|||++.......           +.|+|||++. ...++
T Consensus       160 ~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~-~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~  237 (334)
T 2pvf_A          160 VSCTYQLARGMEYLASQKCIHRDLAARNVLVTE-NNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALF-DRVYT  237 (334)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECSCCSGGGEEECT-TCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHH-HCEEC
T ss_pred             HHHHHHHHHHHHHHHhCCeeCCCCccceEEEcC-CCCEEEccccccccccccccccccCCCCcccceeChHHhc-CCCcC
Confidence            899999999999999999999999999999998 8999999999997654321           4599999654 44589


Q ss_pred             chhhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhh
Q 005958          303 IAFDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLL  381 (667)
Q Consensus       303 ~ksDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L  381 (667)
                      .++|||||||++|||++ |..||.            +.+...+...+....         .......+++++.+||.+||
T Consensus       238 ~~~Di~slG~il~ellt~g~~p~~------------~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~li~~~l  296 (334)
T 2pvf_A          238 HQSDVWSFGVLMWEIFTLGGSPYP------------GIPVEELFKLLKEGH---------RMDKPANCTNELYMMMRDCW  296 (334)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCSST------------TCCHHHHHHHHHHTC---------CCCCCTTCCHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHhCCCCCcC------------cCCHHHHHHHHhcCC---------CCCCCccCCHHHHHHHHHHc
Confidence            99999999999999999 999985            223333333322211         11233567899999999999


Q ss_pred             hcCcCCCCCHHHHHcC
Q 005958          382 ATKPSKRISCLDALRH  397 (667)
Q Consensus       382 ~~DP~kRpSa~elL~H  397 (667)
                      ..||++|||+.|++++
T Consensus       297 ~~dp~~Rps~~ell~~  312 (334)
T 2pvf_A          297 HAVPSQRPTFKQLVED  312 (334)
T ss_dssp             CSSGGGSCCHHHHHHH
T ss_pred             cCChhhCcCHHHHHHH
Confidence            9999999999999874

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=100.00  E-value=8e-40  Score=342.23  Aligned_cols=246  Identities=19%  Similarity=0.209  Sum_probs=191.2

Q ss_pred             cccCCeEEE-eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           83 FNMGDFKIL-DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        83 ~~~~~y~i~-~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ...++|.+. +.||+|+||    .||+|.+..     +++.||||++...   ....+|+.++.++.     .||||+++
T Consensus        14 ~~~~~y~~~~~~lg~G~~g----~V~~~~~~~-----~~~~vaiK~~~~~---~~~~~e~~~~~~~~-----~h~~i~~~   76 (299)
T 3m2w_A           14 AIIDDYKVTSQVLGLGING----KVLQIFNKR-----TQEKFALKMLQDC---PKARREVELHWRAS-----QCPHIVRI   76 (299)
T ss_dssp             CGGGTEEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEECS---HHHHHHHHHHHHHT-----TSTTBCCE
T ss_pred             ccccchhhcCcccccCCCe----EEEEEEEcC-----CCcEEEEEEeccc---HHHHHHHHHHHHhc-----cCCCchhH
Confidence            345789888 789999999    999999987     7999999999653   45678999996665     69999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.... .....+++||| |+++|+|.+++.....       ..+++                    ..++.++.||+
T Consensus        77 ~~~~~~~~-~~~~~~~lv~e-~~~~~~L~~~l~~~~~-------~~~~~--------------------~~~~~i~~qi~  127 (299)
T 3m2w_A           77 VDVYENLY-AGRKCLLIVME-CLDGGELFSRIQDRGD-------QAFTE--------------------REASEIMKSIG  127 (299)
T ss_dssp             EEEEEEEE-TTEEEEEEEEC-CCCSCBHHHHHHHCTT-------CCCBH--------------------HHHHHHHHHHH
T ss_pred             Hhhhhhhc-CCCceEEEEEe-ecCCCcHHHHHHhccC-------CCCCH--------------------HHHHHHHHHHH
Confidence            99997311 13678999999 9999999999987531       13443                    56788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCC--CCeEEEeeecccccccCCCCCCCCcccccCCCCCCchhhHHHHHHHHHHHHh
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPV--DRHIKVGILGNAADFYEDGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVL  319 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~--~~~vKL~DFGlA~~~~~~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemlt  319 (667)
                      .||.|||++||+||||||+|||++..  ++.+||+|||+|....              ...|+.++|||||||++|||++
T Consensus       128 ~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~--------------~~~~~~~~DiwslG~il~el~t  193 (299)
T 3m2w_A          128 EAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT--------------GEKYDKSCDMWSLGVIMYILLC  193 (299)
T ss_dssp             HHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECT--------------TCGGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCcccCCCCHHHEEEecCCCCCcEEEeccccccccc--------------cccCCchhhHHHHHHHHHHHHH
Confidence            99999999999999999999999973  5789999999986433              3458899999999999999999


Q ss_pred             CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCC--CcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcC
Q 005958          320 RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNT--GFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRH  397 (667)
Q Consensus       320 G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~H  397 (667)
                      |++||..........                ...........  ..+....+++++++||.+||+.||++|||+.|+|+|
T Consensus       194 g~~pf~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~h  257 (299)
T 3m2w_A          194 GYPPFYSNHGLAISP----------------GMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH  257 (299)
T ss_dssp             SSCSCCC-------C----------------CSCCSSCTTCCSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             CCCCCCCCcchhhhH----------------HHHHHHhhccccCCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence            999996322110000                00000000000  111224678999999999999999999999999999


Q ss_pred             CCCCCCC
Q 005958          398 PFLCGPR  404 (667)
Q Consensus       398 Pwf~~~~  404 (667)
                      |||.+..
T Consensus       258 p~~~~~~  264 (299)
T 3m2w_A          258 PWIMQST  264 (299)
T ss_dssp             HHHHTGG
T ss_pred             hhhcccc
Confidence            9998765

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=100.00  E-value=2e-40  Score=366.39  Aligned_cols=253  Identities=16%  Similarity=0.167  Sum_probs=190.5

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      .+...+|++.+.||+|+||    +||.... .     +++.||||++..... ....+|+++|+++.     .||||+++
T Consensus        20 ~i~~~~y~~~~~LG~G~~G----~V~~~~~-~-----~~~~vAvK~~~~~~~-~~~~~E~~~l~~l~-----~HpnIv~l   83 (432)
T 3p23_A           20 IVGKISFCPKDVLGHGAEG----TIVYRGM-F-----DNRDVAVKRILPECF-SFADREVQLLRESD-----EHPNVIRY   83 (432)
T ss_dssp             EETTEEEEEEEEEEECGGG----CEEEEEE-S-----SSSEEEEEEECTTTE-EECHHHHHHHHHSC-----CCTTBCCE
T ss_pred             EEccEEEecCCeeecCcCE----EEEEEEE-e-----CCeEEEEEEECHHHH-HHHHHHHHHHHhcc-----CCCCcCeE
Confidence            3444569999999999999    8764333 3     689999999975322 23578999999985     59999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     +...+||||| ||++ +|.+++.....        .+.+                    ..+..++.||+
T Consensus        84 ~~~~~-----~~~~~~lv~E-~~~g-~L~~~l~~~~~--------~~~~--------------------~~~~~i~~qi~  128 (432)
T 3p23_A           84 FCTEK-----DRQFQYIAIE-LCAA-TLQEYVEQKDF--------AHLG--------------------LEPITLLQQTT  128 (432)
T ss_dssp             EEEEE-----ETTEEEEEEE-CCSE-EHHHHHHSSSC--------CCCS--------------------SCHHHHHHHHH
T ss_pred             EEEEe-----cCCEEEEEEE-CCCC-CHHHHHHhcCC--------Cccc--------------------hhHHHHHHHHH
Confidence            99998     7789999999 9986 99999987531        2222                    12467999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCC----CCeEEEeeecccccccC------------CCCCCCCcccccC--CCCCCc
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPV----DRHIKVGILGNAADFYE------------DGPNNSSPDSNMD--RRQMMI  303 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~----~~~vKL~DFGlA~~~~~------------~~~~Y~APE~l~~--~~~ys~  303 (667)
                      .||.|||++||+||||||+|||++..    ...+||+|||+|+....            +.+.|+|||++.+  ...++.
T Consensus       129 ~aL~~LH~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~  208 (432)
T 3p23_A          129 SGLAHLHSLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTY  208 (432)
T ss_dssp             HHHHHHHHTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC------------CCSCTTSCCGGGTSCC---CCCT
T ss_pred             HHHHHHHHCcCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCcceeeccccCCCcCccChhhhhcccccCCCc
Confidence            99999999999999999999999631    23688999999976542            3478999997654  456788


Q ss_pred             hhhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhh
Q 005958          304 AFDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLA  382 (667)
Q Consensus       304 ksDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~  382 (667)
                      ++|||||||++|||++ |.+||.....            ... ..   .......   .........+..+++||.+||+
T Consensus       209 ~~DiwSlG~il~ellt~g~~pf~~~~~------------~~~-~~---~~~~~~~---~~~~~~~~~~~~~~~li~~~L~  269 (432)
T 3p23_A          209 TVDIFSAGCVFYYVISEGSHPFGKSLQ------------RQA-NI---LLGACSL---DCLHPEKHEDVIARELIEKMIA  269 (432)
T ss_dssp             HHHHHHHHHHHHHHHTTSCBTTBSTTT------------HHH-HH---HTTCCCC---TTSCTTCHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHcCCCCCcchhhH------------HHH-HH---HhccCCc---cccCccccccHHHHHHHHHHHh
Confidence            9999999999999999 9999852211            111 11   1111000   0111122345678999999999


Q ss_pred             cCcCCCCCHHHHHcCCCCCCCC
Q 005958          383 TKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       383 ~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      .||++|||++|+|+||||+...
T Consensus       270 ~dP~~Rps~~evl~hp~f~~~~  291 (432)
T 3p23_A          270 MDPQKRPSAKHVLKHPFFWSLE  291 (432)
T ss_dssp             SSGGGSCCHHHHHTSTTTCCHH
T ss_pred             CCHhhCCCHHHHHhCccccChH
Confidence            9999999999999999998755

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.6e-40  Score=347.16  Aligned_cols=252  Identities=17%  Similarity=0.202  Sum_probs=189.0

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCCC
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      ....+...+|++.+.||+|+||    .||+|++..     +++.||||++...  ...+.+.+|+.+++++.     +||
T Consensus        21 ~~~~~~~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-----~h~   86 (337)
T 3ll6_A           21 QTVELGELRLRVRRVLAEGGFA----FVYEAQDVG-----SGREYALKRLLSNEEEKNRAIIQEVCFMKKLS-----GHP   86 (337)
T ss_dssp             CEEEETTEEEEEEEEEECCSSE----EEEEEEETT-----TCCEEEEEEEEESSHHHHHHHHHHHHHHHHHT-----TST
T ss_pred             ceeeccCceEEEEEEEccCCce----EEEEEEECC-----CCcEEEEEEecCCchHHHHHHHHHHHHHHHhc-----cCC
Confidence            4455666789999999999999    999999987     7999999998653  23456789999999996     699


Q ss_pred             cceEEEEEEEecc---cCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHH
Q 005958          157 YSMQVHGYVSSHT---TSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLI  233 (667)
Q Consensus       157 nIv~l~~~~~~~~---~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i  233 (667)
                      ||+++++++....   ......+++||| |+++ +|.+++.....      ...+++                    ..+
T Consensus        87 ~iv~~~~~~~~~~~~~~~~~~~~~lv~e-~~~g-~L~~~l~~~~~------~~~~~~--------------------~~~  138 (337)
T 3ll6_A           87 NIVQFCSAASIGKEESDTGQAEFLLLTE-LCKG-QLVEFLKKMES------RGPLSC--------------------DTV  138 (337)
T ss_dssp             TBCCEEEEEEECTTTSTTSSEEEEEEEE-CCSE-EHHHHHHHHHT------TCSCCH--------------------HHH
T ss_pred             ChhhccccccccccccccCCceEEEEEE-ecCC-CHHHHHHHhhc------cCCCCH--------------------HHH
Confidence            9999999995321   125667999999 9985 99999875210      113444                    567


Q ss_pred             HHHHHHHHHHHHHHHHCC--CcccCCCCCcEEEcCCCCeEEEeeecccccccC---------------------CCCCCC
Q 005958          234 RLLMRDLLIGVNYLHSHG--LAHTELRLENVHISPVDRHIKVGILGNAADFYE---------------------DGPNNS  290 (667)
Q Consensus       234 ~~i~~QIl~aL~yLHs~g--IvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------------------~~~~Y~  290 (667)
                      +.++.||+.||.|||++|  |+||||||+|||++. ++.+||+|||++.....                     +.+.|+
T Consensus       139 ~~i~~qi~~~l~~LH~~~~~ivH~Dikp~NIl~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~  217 (337)
T 3ll6_A          139 LKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSN-QGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYR  217 (337)
T ss_dssp             HHHHHHHHHHHHHHHTSSSCCBCCCCCGGGCEECT-TSCEEBCCCTTCBCCSSCC-------------------------
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEccCCcccEEECC-CCCEEEecCccceeccccCcccccccccccchhhccccCCCCcC
Confidence            889999999999999999  999999999999998 89999999999986543                     336799


Q ss_pred             Cccccc--CCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccC
Q 005958          291 SPDSNM--DRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDR  368 (667)
Q Consensus       291 APE~l~--~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  368 (667)
                      |||++.  ....++.++|||||||++|+|++|+.||......               .......         ..+....
T Consensus       218 aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~---------------~~~~~~~---------~~~~~~~  273 (337)
T 3ll6_A          218 TPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKL---------------RIVNGKY---------SIPPHDT  273 (337)
T ss_dssp             ------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC---------------------------C---------CCCTTCC
T ss_pred             ChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHH---------------HhhcCcc---------cCCcccc
Confidence            999653  4556899999999999999999999998532110               1111111         1122344


Q ss_pred             CCHHHHHHHHHhhhcCcCCCCCHHHHHcC
Q 005958          369 NWGAGWNLLSLLLATKPSKRISCLDALRH  397 (667)
Q Consensus       369 ~s~e~~dLI~~~L~~DP~kRpSa~elL~H  397 (667)
                      .++++.+||.+||+.||++|||+.|+++|
T Consensus       274 ~~~~~~~li~~~l~~~p~~Rps~~e~l~~  302 (337)
T 3ll6_A          274 QYTVFHSLIRAMLQVNPEERLSIAEVVHQ  302 (337)
T ss_dssp             SSGGGHHHHHHHSCSSGGGSCCHHHHHHH
T ss_pred             cchHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            56789999999999999999999999987

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=2.8e-40  Score=349.82  Aligned_cols=263  Identities=17%  Similarity=0.153  Sum_probs=200.4

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEE--EEEEEcchh---hHHHHHHHHHHHHHHhhccCC
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKV--VLRQLISVQ---AQRRGRRAIEVLKKLVRRRLM  153 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~v--AvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~  153 (667)
                      ..+.+..++|++.+.||+|+||    .||+|++..     ++..+  |+|.+....   ..+.+.+|+++++++.     
T Consensus        18 ~~p~~~~~~y~~~~~lg~G~~g----~Vy~~~~~~-----~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~-----   83 (327)
T 1fvr_A           18 IYPVLDWNDIKFQDVIGEGNFG----QVLKARIKK-----DGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLG-----   83 (327)
T ss_dssp             CSSBCCGGGCEEEEEEECGGGC----EEEEEEEEE-----TTEEEEEEEEEEECC------CHHHHHHHHHTTCC-----
T ss_pred             ccccccHHHccceeeeecCCCc----eEEEEEEcc-----CCcccceeeeeeccccchHHHHHHHHHHHHHHhcc-----
Confidence            4455677999999999999999    999999987     67655  999987522   3345788999999995     


Q ss_pred             CCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHH
Q 005958          154 YHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLI  233 (667)
Q Consensus       154 ~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i  233 (667)
                      .||||+++++++.     ..+.+|+||| |+++|+|.+++........         ..+...    .......++...+
T Consensus        84 ~hp~iv~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~~~~~---------~~~~~~----~~~~~~~~~~~~~  144 (327)
T 1fvr_A           84 HHPNIINLLGACE-----HRGYLYLAIE-YAPHGNLLDFLRKSRVLET---------DPAFAI----ANSTASTLSSQQL  144 (327)
T ss_dssp             CCTTBCCEEEEEE-----ETTEEEEEEC-CCTTCBHHHHHHTTCHHHH---------CHHHHH----HTTBSCSSCHHHH
T ss_pred             CCCchhhhceeee-----eCCceEEEEe-cCCCCCHHHHHHhcccccc---------cccccc----cccccccCCHHHH
Confidence            5999999999998     7789999999 9999999999987531000         000000    0001112334678


Q ss_pred             HHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC--------CCCCCCCcccccCCCCCCchh
Q 005958          234 RLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE--------DGPNNSSPDSNMDRRQMMIAF  305 (667)
Q Consensus       234 ~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~--------~~~~Y~APE~l~~~~~ys~ks  305 (667)
                      +.++.||+.||.|||++||+||||||+|||++. ++.+||+|||++.....        ..+.|+|||++ ....++.++
T Consensus       145 ~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~-~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~  222 (327)
T 1fvr_A          145 LHFAADVARGMDYLSQKQFIHRDLAARNILVGE-NYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESL-NYSVYTTNS  222 (327)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECSCCSGGGEEECG-GGCEEECCTTCEESSCEECCC----CCTTTCCHHHH-HHCEECHHH
T ss_pred             HHHHHHHHHHHHHHHhCCccCCCCccceEEEcC-CCeEEEcccCcCccccccccccCCCCCccccChhhh-ccccCCchh
Confidence            899999999999999999999999999999998 88999999999874321        22579999965 445689999


Q ss_pred             hHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          306 DMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       306 DIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      |||||||++|||++ |.+||..            .....+.+.   .....      .......+++++.+||.+||+.|
T Consensus       223 Di~slG~il~ellt~g~~pf~~------------~~~~~~~~~---~~~~~------~~~~~~~~~~~l~~li~~~l~~d  281 (327)
T 1fvr_A          223 DVWSYGVLLWEIVSLGGTPYCG------------MTCAELYEK---LPQGY------RLEKPLNCDDEVYDLMRQCWREK  281 (327)
T ss_dssp             HHHHHHHHHHHHHTTSCCTTTT------------CCHHHHHHH---GGGTC------CCCCCTTBCHHHHHHHHHHTCSS
T ss_pred             cchHHHHHHHHHHcCCCCCCCC------------CcHHHHHHH---hhcCC------CCCCCCCCCHHHHHHHHHHccCC
Confidence            99999999999998 9999852            222222222   11111      11233467889999999999999


Q ss_pred             cCCCCCHHHHHcC
Q 005958          385 PSKRISCLDALRH  397 (667)
Q Consensus       385 P~kRpSa~elL~H  397 (667)
                      |++|||++|+++|
T Consensus       282 p~~Rps~~ell~~  294 (327)
T 1fvr_A          282 PYERPSFAQILVS  294 (327)
T ss_dssp             GGGSCCHHHHHHH
T ss_pred             hhhCcCHHHHHHH
Confidence            9999999999875

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=6.6e-40  Score=368.23  Aligned_cols=246  Identities=17%  Similarity=0.209  Sum_probs=203.2

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      .+.+..++|++.+.||+|+||    .||+|.+..     ++..||||+++... ..+.+.+|+.+|++++      ||||
T Consensus       214 ~~~~~~~~~~~~~~lG~G~fg----~Vy~~~~~~-----~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~------hpni  278 (495)
T 1opk_A          214 KWEMERTDITMKHKLGGGQYG----EVYEGVWKK-----YSLTVAVKTLKEDTMEVEEFLKEAAVMKEIK------HPNL  278 (495)
T ss_dssp             CCBCCGGGEEEEEESGGGTTS----SEEEEEEGG-----GTEEEEEEECCSSSSCHHHHHHHHHHHHHCC------CTTB
T ss_pred             ccccCHHHceeeeEecCCCCe----EEEEEEEcC-----CCeEEEEEEecCcccchHHHHHHHHHHHhcC------CCCE
Confidence            455667899999999999999    999999997     78999999997642 3466889999999995      9999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      +++++++.     ..+.+||||| |+++|+|.+++.....       ..+++                    ..+..++.
T Consensus       279 v~l~~~~~-----~~~~~~lv~E-~~~~g~L~~~l~~~~~-------~~~~~--------------------~~~~~i~~  325 (495)
T 1opk_A          279 VQLLGVCT-----REPPFYIITE-FMTYGNLLDYLRECNR-------QEVSA--------------------VVLLYMAT  325 (495)
T ss_dssp             CCEEEEEC-----SSSSCEEEEE-CCTTCBHHHHHHHSCT-------TTSCH--------------------HHHHHHHH
T ss_pred             eeEEEEEe-----cCCcEEEEEE-ccCCCCHHHHHHhcCc-------CCCCH--------------------HHHHHHHH
Confidence            99999998     7788999999 9999999999986431       12443                    45788999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC----------CCCCCcccccCCCCCCchhhHH
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG----------PNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~----------~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      ||+.||+|||++||+||||||+|||++. ++.+||+|||+++......          ..|+|||++. ...|+.++|||
T Consensus       326 qi~~~L~~LH~~~ivHrDlkp~NIll~~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~sDvw  403 (495)
T 1opk_A          326 QISSAMEYLEKKNFIHRNLAARNCLVGE-NHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLA-YNKFSIKSDVW  403 (495)
T ss_dssp             HHHHHHHHHHHTTEECSCCSGGGEEECG-GGCEEECCTTCEECCTTCCEECCTTCCCCGGGCCHHHHH-HCEECHHHHHH
T ss_pred             HHHHHHHHHHhCCcccCCCChhhEEECC-CCcEEEeecccceeccCCceeecCCCcCCcceeCHhHHh-cCCCCcHHhHH
Confidence            9999999999999999999999999998 8999999999998654322          3699999654 45689999999


Q ss_pred             HHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          309 CVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       309 SLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      ||||++|||++ |.+||+.            .+...+.+.+....         .......+++++.+||.+||+.||++
T Consensus       404 SlG~~l~el~t~g~~p~~~------------~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~li~~cl~~dP~~  462 (495)
T 1opk_A          404 AFGVLLWEIATYGMSPYPG------------IDLSQVYELLEKDY---------RMERPEGCPEKVYELMRACWQWNPSD  462 (495)
T ss_dssp             HHHHHHHHHHTTSCCSSTT------------CCGGGHHHHHHTTC---------CCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             hHHHHHHHHHhCCCCCCCC------------CCHHHHHHHHHcCC---------CCCCCCCCCHHHHHHHHHHcCcChhH
Confidence            99999999999 9999863            23333333332211         12334567899999999999999999


Q ss_pred             CCCHHHHHc
Q 005958          388 RISCLDALR  396 (667)
Q Consensus       388 RpSa~elL~  396 (667)
                      |||+.++++
T Consensus       463 RPs~~el~~  471 (495)
T 1opk_A          463 RPSFAEIHQ  471 (495)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999986

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=9.6e-40  Score=362.45  Aligned_cols=244  Identities=17%  Similarity=0.187  Sum_probs=199.3

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      +.+..++|++.+.||+|+||    .||+|.+.       ++.||||+++.....+.+.+|+.+|++++      ||||++
T Consensus       188 ~~i~~~~~~~~~~lG~G~fg----~V~~~~~~-------~~~vavK~~~~~~~~~~~~~E~~~l~~l~------h~niv~  250 (450)
T 1k9a_A          188 WALNMKELKLLQTIGKGEFG----DVMLGDYR-------GNKVAVKCIKNDATAQAFLAEASVMTQLR------HSNLVQ  250 (450)
T ss_dssp             CBCCGGGEEEEEEEEECSSE----EEEEEEET-------TEEEEEEEESSCTTSHHHHHHHHHHHTCC------CTTBCC
T ss_pred             cccChHHeEEEeeecCcCCe----eEEEEEec-------CCeEEEEEeCCchHHHHHHHHHHHHHhcc------CCCEEE
Confidence            45667899999999999999    99999875       57899999987666678899999999995      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++..    ..+.+||||| |+++|+|.+++...+.       ..+++                    ..+..++.||
T Consensus       251 ~~~~~~~----~~~~~~iv~e-~~~~g~L~~~l~~~~~-------~~~~~--------------------~~~~~~~~qi  298 (450)
T 1k9a_A          251 LLGVIVE----EKGGLYIVTE-YMAKGSLVDYLRSRGR-------SVLGG--------------------DCLLKFSLDV  298 (450)
T ss_dssp             EEEEEEC----TTSCEEEEEE-CCTTCBHHHHHHHHCT-------TTCCH--------------------HHHHHHHHHH
T ss_pred             EEEEEEc----CCCceEEEEE-ecCCCcHHHHHHhcCC-------CCCCH--------------------HHHHHHHHHH
Confidence            9999871    3347999999 9999999999987531       12343                    4578899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC------CCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED------GPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      +.||+|||++||+||||||+|||++. ++.+||+|||+++.....      ...|+|||++. ...|+.++|||||||++
T Consensus       299 ~~~l~~LH~~~ivHrDlkp~Nill~~-~~~~kl~DfG~a~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~sDvwslG~~l  376 (450)
T 1k9a_A          299 CEAMEYLEGNNFVHRDLAARNVLVSE-DNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALR-EKKFSTKSDVWSFGILL  376 (450)
T ss_dssp             HHHHHHHHHTTEECSCCCGGGEEECT-TSCEEECCCTTCEECC------CCCTTTSCHHHHH-SSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCeeCCCCCHhhEEECC-CCCEEEeeCCCcccccccccCCCCCcceeCHHHhc-CCCCCcHHHHHHHHHHH
Confidence            99999999999999999999999998 899999999999754432      26799999654 45699999999999999


Q ss_pred             HHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          315 AKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       315 yemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      |||++ |+.||+..            +.......+...         ...+.+..+++++.+||.+||+.||++|||+.+
T Consensus       377 ~el~t~g~~P~~~~------------~~~~~~~~i~~~---------~~~~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~  435 (450)
T 1k9a_A          377 WEIYSFGRVPYPRI------------PLKDVVPRVEKG---------YKMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQ  435 (450)
T ss_dssp             HHHHTTTCCSSTTS------------CTTTHHHHHHTT---------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHHHhCCCCCCCCC------------CHHHHHHHHHcC---------CCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHH
Confidence            99998 99998632            222222222211         112344578899999999999999999999999


Q ss_pred             HHc
Q 005958          394 ALR  396 (667)
Q Consensus       394 lL~  396 (667)
                      +++
T Consensus       436 l~~  438 (450)
T 1k9a_A          436 LRE  438 (450)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=5.4e-40  Score=337.08  Aligned_cols=242  Identities=16%  Similarity=0.191  Sum_probs=188.1

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh------hHHHHHHHHHHHHHHhhccCCCC
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ------AQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~------~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      ++..++|++.+.||+|+||    .||+|.+.       ++.||||++....      ..+.+.+|+++++.++      |
T Consensus         3 ~~~~~~~~~~~~lg~G~~g----~V~~~~~~-------~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~------h   65 (271)
T 3dtc_A            3 EIDFAELTLEEIIGIGGFG----KVYRAFWI-------GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLK------H   65 (271)
T ss_dssp             BCCTTSEEEEEEEEEETTE----EEEEEEET-------TEEEEEEEC----------CHHHHHHHHHHHHHCC------C
T ss_pred             ccchhheeeeeeeccCCCe----EEEEEEEc-------CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcC------C
Confidence            4567899999999999999    99999975       5889999987532      2245789999999995      9


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      |||+++++++.     ..+..++||| |+++|+|.+++...          .+++                    ..++.
T Consensus        66 ~~i~~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~~~~~----------~~~~--------------------~~~~~  109 (271)
T 3dtc_A           66 PNIIALRGVCL-----KEPNLCLVME-FARGGPLNRVLSGK----------RIPP--------------------DILVN  109 (271)
T ss_dssp             TTBCCEEEEEC-----CC--CEEEEE-CCTTEEHHHHHTSS----------CCCH--------------------HHHHH
T ss_pred             CCEeeEEEEEe-----cCCceEEEEE-cCCCCCHHHHhhcC----------CCCH--------------------HHHHH
Confidence            99999999998     7788999999 99999999998643          3454                    45788


Q ss_pred             HHHHHHHHHHHHHHCC---CcccCCCCCcEEEcC-------CCCeEEEeeecccccccCC-------CCCCCCcccccCC
Q 005958          236 LMRDLLIGVNYLHSHG---LAHTELRLENVHISP-------VDRHIKVGILGNAADFYED-------GPNNSSPDSNMDR  298 (667)
Q Consensus       236 i~~QIl~aL~yLHs~g---IvHrDLKPeNILl~~-------~~~~vKL~DFGlA~~~~~~-------~~~Y~APE~l~~~  298 (667)
                      ++.||+.||.|||++|   |+||||||+|||++.       .++.+||+|||++......       .+.|+|||.+. .
T Consensus       110 i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~-~  188 (271)
T 3dtc_A          110 WAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAGAYAWMAPEVIR-A  188 (271)
T ss_dssp             HHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC-------------CCGGGSCHHHHH-H
T ss_pred             HHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCcccccccccccCCCCccceeCHHHhc-c
Confidence            9999999999999999   899999999999985       2578999999999765432       36799999654 4


Q ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHH
Q 005958          299 RQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLS  378 (667)
Q Consensus       299 ~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~  378 (667)
                      ..++.++|||||||++|+|++|+.||...            .......   ......     ...+....+++++.+||.
T Consensus       189 ~~~~~~~Di~slG~~l~~l~~g~~p~~~~------------~~~~~~~---~~~~~~-----~~~~~~~~~~~~~~~li~  248 (271)
T 3dtc_A          189 SMFSKGSDVWSYGVLLWELLTGEVPFRGI------------DGLAVAY---GVAMNK-----LALPIPSTCPEPFAKLME  248 (271)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHCCCTTTTS------------CHHHHHH---HHHTSC-----CCCCCCTTCCHHHHHHHH
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCCCC------------CHHHHHH---hhhcCC-----CCCCCCcccCHHHHHHHH
Confidence            56899999999999999999999999532            1111111   111111     112334567899999999


Q ss_pred             HhhhcCcCCCCCHHHHHcC
Q 005958          379 LLLATKPSKRISCLDALRH  397 (667)
Q Consensus       379 ~~L~~DP~kRpSa~elL~H  397 (667)
                      +||+.||++|||+.|+++|
T Consensus       249 ~~l~~~p~~Rps~~e~l~~  267 (271)
T 3dtc_A          249 DCWNPDPHSRPSFTNILDQ  267 (271)
T ss_dssp             HHTCSSGGGSCCHHHHHHH
T ss_pred             HHhcCCcccCcCHHHHHHH
Confidence            9999999999999999875

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=2.9e-40  Score=349.94  Aligned_cols=243  Identities=15%  Similarity=0.118  Sum_probs=193.5

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCc----EEEEEEEcchhh---HHHHHHHHHHHHHHhhccCCC
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNT----KVVLRQLISVQA---QRRGRRAIEVLKKLVRRRLMY  154 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~----~vAvK~i~~~~~---~~~~~rEi~iL~~L~~~~~~~  154 (667)
                      .+..++|++.+.||+|+||    +||+|.+..     +++    +||+|.+.....   ...+.+|+.+++.+      .
T Consensus         9 ~~~~~~y~~~~~lG~G~~g----~Vy~~~~~~-----~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l------~   73 (325)
T 3kex_A            9 IFKETELRKLKVLGSGVFG----TVHKGVWIP-----EGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSL------D   73 (325)
T ss_dssp             BCCTTTEEEEEEEECCSSC----EEEEEEECC-----TTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTC------C
T ss_pred             hcCHhHceeeeeeeecCCc----eEEEEEEcC-----CCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcC------C
Confidence            4567899999999999999    999999987     444    478887754321   23457899999998      4


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      ||||+++++++.      .+..++||| |+.+|+|.+++...+        ..+++                    ..+.
T Consensus        74 h~~iv~~~~~~~------~~~~~~v~e-~~~~~~L~~~l~~~~--------~~~~~--------------------~~~~  118 (325)
T 3kex_A           74 HAHIVRLLGLCP------GSSLQLVTQ-YLPLGSLLDHVRQHR--------GALGP--------------------QLLL  118 (325)
T ss_dssp             CTTBCCEEEEEC------BSSEEEEEE-CCTTCBSHHHHHSSG--------GGSCT--------------------THHH
T ss_pred             CCCcCeEEEEEc------CCccEEEEE-eCCCCCHHHHHHHcc--------ccCCH--------------------HHHH
Confidence            999999999885      456899999 999999999998642        13444                    3577


Q ss_pred             HHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-----------CCCCCcccccCCCCCCc
Q 005958          235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-----------PNNSSPDSNMDRRQMMI  303 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-----------~~Y~APE~l~~~~~ys~  303 (667)
                      .++.||+.||.|||++||+||||||+|||++. ++.+||+|||+|+......           ..|+|||++. ...|+.
T Consensus       119 ~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~  196 (325)
T 3kex_A          119 NWGVQIAKGMYYLEEHGMVHRNLAARNVLLKS-PSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIH-FGKYTH  196 (325)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSCCSSTTEEESS-SSCEEECSCSGGGGSCCCTTCCC-----CCTTTSCHHHHH-HCCCCH
T ss_pred             HHHHHHHHHHHHHHhCCCCCCccchheEEECC-CCeEEECCCCcccccCcccccccccCCCCcccccChHHhc-cCCCCh
Confidence            89999999999999999999999999999998 8999999999998764332           4799999654 455999


Q ss_pred             hhhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhh
Q 005958          304 AFDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLA  382 (667)
Q Consensus       304 ksDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~  382 (667)
                      ++|||||||++|+|++ |..||..            .........+....         .......+++++.+||.+||.
T Consensus       197 ~~Di~slG~~l~el~~~g~~p~~~------------~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~li~~~l~  255 (325)
T 3kex_A          197 QSDVWSYGVTVWELMTFGAEPYAG------------LRLAEVPDLLEKGE---------RLAQPQICTIDVYMVMVKCWM  255 (325)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCTTTT------------SCTTHHHHHHHTTC---------BCCCCTTBCTTTTHHHHHHTC
T ss_pred             hhHhHHhHHHHHHHHhCCCCCccc------------cCHHHHHHHHHcCC---------CCCCCCcCcHHHHHHHHHHcC
Confidence            9999999999999999 9999852            22233333332211         112233466788999999999


Q ss_pred             cCcCCCCCHHHHHcC
Q 005958          383 TKPSKRISCLDALRH  397 (667)
Q Consensus       383 ~DP~kRpSa~elL~H  397 (667)
                      .||++|||+.++++|
T Consensus       256 ~dp~~Rps~~el~~~  270 (325)
T 3kex_A          256 IDENIRPTFKELANE  270 (325)
T ss_dssp             SCTTTSCCHHHHHHH
T ss_pred             CChhhCcCHHHHHHH
Confidence            999999999999986

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=5.7e-40  Score=338.45  Aligned_cols=245  Identities=20%  Similarity=0.269  Sum_probs=197.8

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGY  164 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~  164 (667)
                      ..+|++.+.||+|+||    .||+|.+..     +++.||+|++....  +.+.+|++++++++      ||||++++++
T Consensus        10 ~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~--~~~~~e~~~l~~l~------h~~i~~~~~~   72 (284)
T 2a19_B           10 GMDFKEIELIGSGGFG----QVFKAKHRI-----DGKTYVIKRVKYNN--EKAEREVKALAKLD------HVNIVHYNGC   72 (284)
T ss_dssp             HHHEEEEEEEECSSSC----CEEEEEETT-----TCCEEEEEEEECCS--GGGHHHHHHHHHCC------CTTBCCEEEE
T ss_pred             ccccceeeeeccCCce----EEEEEEEcC-----CCeEEEEEEecccc--HHHHHHHHHHHhCC------CCCEEEEeee
Confidence            4679999999999999    999999987     78999999997643  34678999999995      9999999999


Q ss_pred             EEeccc-----------CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHH
Q 005958          165 VSSHTT-----------SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLI  233 (667)
Q Consensus       165 ~~~~~~-----------~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i  233 (667)
                      +.....           .....+++||| |+++|+|.+++....       ...+++                    ..+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e-~~~~~~L~~~l~~~~-------~~~~~~--------------------~~~  124 (284)
T 2a19_B           73 WDGFDYDPETSSKNSSRSKTKCLFIQME-FCDKGTLEQWIEKRR-------GEKLDK--------------------VLA  124 (284)
T ss_dssp             EEEEEEC---------CCEEEEEEEEEC-CCCSCBHHHHHHHGG-------GSCCCH--------------------HHH
T ss_pred             EeccccCcccccccccccCcceEEEEEe-ccCCCCHHHHHhhcc-------CCCCCH--------------------HHH
Confidence            863110           12556899999 999999999997642       113444                    457


Q ss_pred             HHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchh
Q 005958          234 RLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAF  305 (667)
Q Consensus       234 ~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ks  305 (667)
                      +.++.||+.||.|||++||+||||||+|||++. ++.+||+|||++......        .+.|+|||++. ...++.++
T Consensus       125 ~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~  202 (284)
T 2a19_B          125 LELFEQITKGVDYIHSKKLINRDLKPSNIFLVD-TKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQIS-SQDYGKEV  202 (284)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEE-TTEEEECCCTTCEESSCCSCCCCCCSCCTTSCHHHHH-CSCCCTHH
T ss_pred             HHHHHHHHHHHHHHHhCCeeeccCCHHHEEEcC-CCCEEECcchhheeccccccccccCCcccccChhhhc-cCCCcchh
Confidence            889999999999999999999999999999998 899999999999765432        36899999654 45689999


Q ss_pred             hHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCc
Q 005958          306 DMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       306 DIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      |||||||++|+|++|..||......                 .......         .....+++++++||.+||..||
T Consensus       203 Di~slG~il~~l~~~~~~~~~~~~~-----------------~~~~~~~---------~~~~~~~~~~~~li~~~l~~dp  256 (284)
T 2a19_B          203 DLYALGLILAELLHVCDTAFETSKF-----------------FTDLRDG---------IISDIFDKKEKTLLQKLLSKKP  256 (284)
T ss_dssp             HHHHHHHHHHHHHSCCSSHHHHHHH-----------------HHHHHTT---------CCCTTSCHHHHHHHHHHTCSSG
T ss_pred             hhHHHHHHHHHHHhcCCcchhHHHH-----------------HHHhhcc---------cccccCCHHHHHHHHHHccCCh
Confidence            9999999999999999887432111                 1111111         1123467899999999999999


Q ss_pred             CCCCCHHHHHcCCCCCC
Q 005958          386 SKRISCLDALRHPFLCG  402 (667)
Q Consensus       386 ~kRpSa~elL~HPwf~~  402 (667)
                      ++|||+.|+++|.+.-.
T Consensus       257 ~~Rps~~e~l~~l~~~~  273 (284)
T 2a19_B          257 EDRPNTSEILRTLTVWK  273 (284)
T ss_dssp             GGSCCHHHHHHHHHHHT
T ss_pred             hhCcCHHHHHHHHHHHh
Confidence            99999999999977543

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=1.4e-39  Score=337.49  Aligned_cols=246  Identities=9%  Similarity=0.089  Sum_probs=188.0

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGY  164 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~  164 (667)
                      .++|++.+.||+|+||    .||+|++..     +++.||||++........+.+|+.+++.++      |++++..+..
T Consensus         8 ~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~e~~~l~~l~------~~~~i~~~~~   72 (296)
T 4hgt_A            8 GNRYRLGRKIGSGSFG----DIYLGTDIA-----AGEEVAIKLECVKTKHPQLHIESKIYKMMQ------GGVGIPTIRW   72 (296)
T ss_dssp             ---CEEEEEEEECSSS----EEEEEEETT-----TTEEEEEEEEEC---CCCHHHHHHHHHHHT------TSTTCCCEEE
T ss_pred             CCceEEeeeecCCCCe----EEEEEEEcC-----CCceEEEEeecccccchHHHHHHHHHHHhc------CCCCCCeeee
Confidence            3789999999999999    999999987     799999999876655566789999999996      6665555554


Q ss_pred             E-EecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          165 V-SSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       165 ~-~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      + .     ..+..++||| |+ +|+|.+++....        ..+++                    ..++.++.||+.|
T Consensus        73 ~~~-----~~~~~~lv~e-~~-~~~L~~~~~~~~--------~~~~~--------------------~~~~~i~~qi~~~  117 (296)
T 4hgt_A           73 CGA-----EGDYNVMVME-LL-GPSLEDLFNFCS--------RKFSL--------------------KTVLLLADQMISR  117 (296)
T ss_dssp             EEE-----ETTEEEEEEE-CC-CCBHHHHHHHTT--------SCCCH--------------------HHHHHHHHHHHHH
T ss_pred             ecC-----CCCceEEEEE-cc-CCCHHHHHHHhc--------CCCCH--------------------HHHHHHHHHHHHH
Confidence            4 4     6788999999 99 669999998532        13444                    4578899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEE---cCCCCeEEEeeecccccccC----------------CCCCCCCcccccCCCCCCch
Q 005958          244 VNYLHSHGLAHTELRLENVHI---SPVDRHIKVGILGNAADFYE----------------DGPNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl---~~~~~~vKL~DFGlA~~~~~----------------~~~~Y~APE~l~~~~~ys~k  304 (667)
                      |.|||++||+||||||+|||+   +. ++.+||+|||++.....                +.+.|+|||++. ...++.+
T Consensus       118 l~~LH~~~ivH~Dlkp~NIl~~~~~~-~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~  195 (296)
T 4hgt_A          118 IEYIHSKNFIHRDVKPDNFLMGLGKK-GNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHL-GIEQSRR  195 (296)
T ss_dssp             HHHHHHTTEECSCCSGGGEEECCGGG-TTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHT-TCCCCHH
T ss_pred             HHHHHHCCeecCCCCHHHeeeeccCC-CCeEEEecCccceeccCcccCccCCCCcccccCCCccccchHHhc-CCCCCch
Confidence            999999999999999999999   55 78999999999986543                236799999554 4568999


Q ss_pred             hhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          305 FDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       305 sDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      +|||||||++|+|++|++||.....        ...................      ......+++++.+||.+||+.|
T Consensus       196 ~Di~slG~il~~l~~g~~pf~~~~~--------~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~li~~~l~~~  261 (296)
T 4hgt_A          196 DDLESLGYVLMYFNLGSLPWQGLKA--------ATKRQKYERISEKKMSTPI------EVLCKGYPSEFATYLNFCRSLR  261 (296)
T ss_dssp             HHHHHHHHHHHHHHHSSCTTSSCCC--------SSSSSHHHHHHHHHHHSCH------HHHTTTSCHHHHHHHHHHHTSC
T ss_pred             hHHHHHHHHHHHHhcCCCCCcccch--------hhhhhhhhhhhcccccchh------hhhhccCCHHHHHHHHHHHhcC
Confidence            9999999999999999999963211        0011112222221111110      0122456789999999999999


Q ss_pred             cCCCCCHHHHHc
Q 005958          385 PSKRISCLDALR  396 (667)
Q Consensus       385 P~kRpSa~elL~  396 (667)
                      |++|||+.++++
T Consensus       262 p~~Rpt~~~l~~  273 (296)
T 4hgt_A          262 FDDKPDYSYLRQ  273 (296)
T ss_dssp             TTCCCCHHHHHH
T ss_pred             CCCCCCHHHHHH
Confidence            999999999886

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=1.3e-39  Score=341.99  Aligned_cols=260  Identities=14%  Similarity=0.156  Sum_probs=193.1

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCC
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMY  154 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~  154 (667)
                      ....+..++|++.+.||+|+||    .||+|.+....  .+++.||+|++...    ...+.+.+|+.++++++      
T Consensus        27 ~~~~~~~~~y~~~~~lg~G~~g----~V~~~~~~~~~--~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~------   94 (313)
T 3brb_A           27 EDVVIDRNLLILGKILGEGEFG----SVMEGNLKQED--GTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFS------   94 (313)
T ss_dssp             TTTBCCGGGEEEEEEEEC-CCC----CEEEEEEECTT--SCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCC------
T ss_pred             HhcccCHHHeeeccceeecCCe----EEEEEEEeccC--CceeEEEEEEEeccccchhHHHHHHHHHHHHhcCC------
Confidence            3445666899999999999999    99999887521  25678999998743    23355789999999994      


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      ||||+++++++...........++||| |+++|+|.+++.......   ....++                    ...++
T Consensus        95 h~~iv~~~~~~~~~~~~~~~~~~~v~e-~~~~~~L~~~l~~~~~~~---~~~~~~--------------------~~~~~  150 (313)
T 3brb_A           95 HPNVIRLLGVCIEMSSQGIPKPMVILP-FMKYGDLHTYLLYSRLET---GPKHIP--------------------LQTLL  150 (313)
T ss_dssp             CTTBCCCCEEEEC-------CEEEEEE-CCTTCBHHHHHHHTTBTT---SCCCCC--------------------HHHHH
T ss_pred             CCCeeeeeEEEeeccccCCcccEEEEe-cccCCCHHHHHHHhhhhc---CCccCC--------------------HHHHH
Confidence            999999999998432222235799999 999999999996532100   001233                    45688


Q ss_pred             HHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCc
Q 005958          235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMI  303 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~  303 (667)
                      .++.||+.||.|||++||+||||||+|||++. ++.+||+|||++......           .+.|+|||.+. ...++.
T Consensus       151 ~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~  228 (313)
T 3brb_A          151 KFMVDIALGMEYLSNRNFLHRDLAARNCMLRD-DMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLA-DRVYTS  228 (313)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCCCCSGGGEEECT-TSCEEECSCSCC----------------CCGGGSCHHHHH-SSCCCH
T ss_pred             HHHHHHHHHHHHHHhCCcccCCCCcceEEEcC-CCcEEEeecCcceecccccccCcccccCCCccccCchhhc-CCCccc
Confidence            89999999999999999999999999999998 899999999999765432           24699999654 556899


Q ss_pred             hhhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhh
Q 005958          304 AFDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLA  382 (667)
Q Consensus       304 ksDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~  382 (667)
                      ++|||||||++|+|++ |.+||..            .........+..   ..      .......+++++.+||.+||.
T Consensus       229 ~~Di~slG~il~el~~~g~~p~~~------------~~~~~~~~~~~~---~~------~~~~~~~~~~~l~~li~~~l~  287 (313)
T 3brb_A          229 KSDVWAFGVTMWEIATRGMTPYPG------------VQNHEMYDYLLH---GH------RLKQPEDCLDELYEIMYSCWR  287 (313)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCSSTT------------CCGGGHHHHHHT---TC------CCCCBTTCCHHHHHHHHHTTC
T ss_pred             hhhhHHHHHHHHHHHhcCCCCCcc------------CCHHHHHHHHHc---CC------CCCCCccccHHHHHHHHHHcC
Confidence            9999999999999999 8899852            222222222211   11      122345678999999999999


Q ss_pred             cCcCCCCCHHHHHcC
Q 005958          383 TKPSKRISCLDALRH  397 (667)
Q Consensus       383 ~DP~kRpSa~elL~H  397 (667)
                      .||++|||+.++++|
T Consensus       288 ~dp~~Rps~~~l~~~  302 (313)
T 3brb_A          288 TDPLDRPTFSVLRLQ  302 (313)
T ss_dssp             SSGGGSCCHHHHHHH
T ss_pred             CChhhCcCHHHHHHH
Confidence            999999999999874

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.9e-40  Score=361.76  Aligned_cols=257  Identities=16%  Similarity=0.170  Sum_probs=196.9

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ..++|++.+.||+|+||    +||+|++..     +++.||||++....   ..+...+|++++++++      ||||++
T Consensus         7 ~~~~y~i~~~LG~G~~g----~Vy~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~------hpnIv~   71 (396)
T 4eut_A            7 SNHLWLLSDILGQGATA----NVFRGRHKK-----TGDLFAIKVFNNISFLRPVDVQMREFEVLKKLN------HKNIVK   71 (396)
T ss_dssp             SSEEEEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCC------CTTBCC
T ss_pred             CCCceEEEEEEEcCCCe----EEEEEEECC-----CCcEEEEEEeccccccchHHHHHHHHHHHHhcC------CCCCCe
Confidence            45789999999999999    999999998     79999999997532   2355689999999995      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++...   .....|+||| |+++|+|.+++.....      ...+++                    ..++.++.||
T Consensus        72 ~~~~~~~~---~~~~~~lv~e-~~~~g~L~~~l~~~~~------~~~l~~--------------------~~~~~i~~qi  121 (396)
T 4eut_A           72 LFAIEEET---TTRHKVLIME-FCPCGSLYTVLEEPSN------AYGLPE--------------------SEFLIVLRDV  121 (396)
T ss_dssp             EEEEEECT---TTCCEEEEEC-CCTTEEHHHHTTSGGG------TTCCCH--------------------HHHHHHHHHH
T ss_pred             EEEeeccC---CCCeeEEEEe-cCCCCCHHHHHHhhhc------ccCCCH--------------------HHHHHHHHHH
Confidence            99999843   4458899999 9999999999976421      112444                    5678899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEE----cCCCCeEEEeeecccccccC--------CCCCCCCcccccC-------CCCC
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHI----SPVDRHIKVGILGNAADFYE--------DGPNNSSPDSNMD-------RRQM  301 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl----~~~~~~vKL~DFGlA~~~~~--------~~~~Y~APE~l~~-------~~~y  301 (667)
                      +.||+|||++||+||||||+|||+    +. ++.+||+|||+|+....        +.+.|+|||++.+       ...|
T Consensus       122 ~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~-~~~~kL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~  200 (396)
T 4eut_A          122 VGGMNHLRENGIVHRNIKPGNIMRVIGEDG-QSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKY  200 (396)
T ss_dssp             HHHHHHHHHTTEECCCCCGGGEEEEECTTS-CEEEEECCGGGCEECCCGGGSSCSSSCCTTCCHHHHHHHCC--CHHHHH
T ss_pred             HHHHHHHHHCCEEECCcCHHHEEEeecCCC-ceeEEEecCCCceEccCCCccccccCCccccCHHHhhccccccccccCC
Confidence            999999999999999999999999    54 67899999999976543        2478999996643       1457


Q ss_pred             CchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCC------------------CCc
Q 005958          302 MIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGN------------------TGF  363 (667)
Q Consensus       302 s~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~------------------~~~  363 (667)
                      +.++|||||||++|||++|+.||....           .+....+.+..+....++...                  ...
T Consensus       201 ~~~~DiwSlG~il~el~tg~~Pf~~~~-----------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  269 (396)
T 4eut_A          201 GATVDLWSIGVTFYHAATGSLPFRPFE-----------GPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSC  269 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCSEECTT-----------CTTTCHHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCCTTC
T ss_pred             CcHHHHHHHHHHHHHHHHCCCCCCCCC-----------cccchHHHHHHHhcCCCcccchhheeccCCCcccCccCCccc
Confidence            889999999999999999999985211           111112222222222221100                  011


Q ss_pred             ccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcC
Q 005958          364 QILDRNWGAGWNLLSLLLATKPSKRISCLDALRH  397 (667)
Q Consensus       364 ~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~H  397 (667)
                      ......++.+.+||.+||+.||++|||++|++++
T Consensus       270 ~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~  303 (396)
T 4eut_A          270 SLSRGLQVLLTPVLANILEADQEKCWGFDQFFAE  303 (396)
T ss_dssp             SSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHH
T ss_pred             ccchHHHhhchHHHHHhhccChhhhccHHHHHHH
Confidence            1223345688999999999999999999998653

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=1.6e-39  Score=338.38  Aligned_cols=255  Identities=16%  Similarity=0.173  Sum_probs=189.3

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ...++|++.+.||+|+||    +||+|++.       ++.||||++... ......+|.+++....    +.||||++++
T Consensus         5 ~~~~~y~~~~~lg~G~~g----~V~~~~~~-------~~~vavK~~~~~-~~~~~~~e~~~~~~~~----l~h~niv~~~   68 (301)
T 3q4u_A            5 TVARDITLLECVGKGRYG----EVWRGSWQ-------GENVAVKIFSSR-DEKSWFRETELYNTVM----LRHENILGFI   68 (301)
T ss_dssp             CCGGGCEEEEEEEECSSE----EEEEEEET-------TEEEEEEEECGG-GHHHHHHHHHHHHHTC----CCCTTBCCEE
T ss_pred             cccCcEEEEEeeccCCCc----EEEEEEEC-------CEEEEEEEeccc-cchhhHHHHHHHHHhh----ccCcCeeeEE
Confidence            345789999999999999    99999873       688999999764 3345677888887731    2599999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.... .....+|+||| |+++|+|.++++..          .+++                    ..+..++.||+.
T Consensus        69 ~~~~~~~-~~~~~~~lv~e-~~~~g~L~~~l~~~----------~~~~--------------------~~~~~i~~~i~~  116 (301)
T 3q4u_A           69 ASDMTSR-HSSTQLWLITH-YHEMGSLYDYLQLT----------TLDT--------------------VSCLRIVLSIAS  116 (301)
T ss_dssp             EEEEEEE-TTEEEEEEEEC-CCTTCBHHHHHTTC----------CBCH--------------------HHHHHHHHHHHH
T ss_pred             Eeecccc-CCCceeEEehh-hccCCCHHHHHhhc----------ccCH--------------------HHHHHHHHHHHH
Confidence            9976321 14567999999 99999999999643          3454                    457789999999


Q ss_pred             HHHHHH--------HCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-------------CCCCCCCcccccCCC--
Q 005958          243 GVNYLH--------SHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-------------DGPNNSSPDSNMDRR--  299 (667)
Q Consensus       243 aL~yLH--------s~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-------------~~~~Y~APE~l~~~~--  299 (667)
                      ||+|||        ++||+||||||+|||++. ++.+||+|||+|+....             +.+.|+|||++.+..  
T Consensus       117 ~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  195 (301)
T 3q4u_A          117 GLAHLHIEIFGTQGKPAIAHRDLKSKNILVKK-NGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQV  195 (301)
T ss_dssp             HHHHHHSCBCSTTCBCEEECSCCCGGGEEECT-TSCEEECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCT
T ss_pred             HHHHHHHhhhhccCCCCeecCCCChHhEEEcC-CCCEEEeeCCCeeecccccccccccccccccccceeChhhhcCcCCC
Confidence            999999        999999999999999998 89999999999965432             336799999765543  


Q ss_pred             ---CCCchhhHHHHHHHHHHHHhC----------CCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccc
Q 005958          300 ---QMMIAFDMRCVGFMMAKMVLR----------ELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQIL  366 (667)
Q Consensus       300 ---~ys~ksDIWSLGviLyemltG----------~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~  366 (667)
                         .++.++|||||||++|||++|          .+||.+...       ...........   ................
T Consensus       196 ~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~-------~~~~~~~~~~~---~~~~~~~~~~~~~~~~  265 (301)
T 3q4u_A          196 DCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVP-------NDPSFEDMRKV---VCVDQQRPNIPNRWFS  265 (301)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSC-------SSCCHHHHHHH---HTTSCCCCCCCGGGGG
T ss_pred             CcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCC-------CCcchhhhhHH---HhccCCCCCCChhhcc
Confidence               345799999999999999999          777642210       01111111111   1111111000001112


Q ss_pred             cCCCHHHHHHHHHhhhcCcCCCCCHHHHHc
Q 005958          367 DRNWGAGWNLLSLLLATKPSKRISCLDALR  396 (667)
Q Consensus       367 ~~~s~e~~dLI~~~L~~DP~kRpSa~elL~  396 (667)
                      ...++++.+||.+||+.||++|||+.|+++
T Consensus       266 ~~~~~~l~~li~~cl~~dP~~Rps~~~i~~  295 (301)
T 3q4u_A          266 DPTLTSLAKLMKECWYQNPSARLTALRIKK  295 (301)
T ss_dssp             SHHHHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred             CccHHHHHHHHHHHhhcChhhCCCHHHHHH
Confidence            235578999999999999999999999986

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=2.7e-39  Score=339.05  Aligned_cols=249  Identities=16%  Similarity=0.168  Sum_probs=189.8

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcc-----hhhHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS-----VQAQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~-----~~~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      ...++|++.+.||+|+||    .||+|.+..     +++.||||++..     ......+.+|+.+++.++      |||
T Consensus        29 ~~~~~y~~~~~lg~G~~g----~Vy~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~------h~~   93 (310)
T 2wqm_A           29 NTLANFRIEKKIGRGQFS----EVYRAACLL-----DGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLN------HPN   93 (310)
T ss_dssp             SSGGGEEEEEEEECC--C----EEEEEEETT-----TCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCC------CTT
T ss_pred             ccccceEEEEeecCCCCc----eEEEEEEcC-----CCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCC------CCC
Confidence            346789999999999999    999999987     789999999974     223456789999999994      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     ..+..++||| |+++|+|.+++.....     ....+++                    ..++.++
T Consensus        94 i~~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~~-----~~~~~~~--------------------~~~~~i~  142 (310)
T 2wqm_A           94 VIKYYASFI-----EDNELNIVLE-LADAGDLSRMIKHFKK-----QKRLIPE--------------------RTVWKYF  142 (310)
T ss_dssp             BCCEEEEEE-----ETTEEEEEEE-CCCSCBHHHHHHHHHH-----TTCCCCH--------------------HHHHHHH
T ss_pred             EeeEEEEEE-----cCCcEEEEEe-cCCCCCHHHHHHHhcc-----cccCCCH--------------------HHHHHHH
Confidence            999999998     6789999999 9999999999975210     0113444                    4578899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHH
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      .||+.||.|||++||+||||||+||+++. ++.+||+|||++.....         +.+.|+|||++. ...++.++|||
T Consensus       143 ~qi~~~l~~LH~~~i~H~dl~p~NIl~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Dv~  220 (310)
T 2wqm_A          143 VQLCSALEHMHSRRVMHRDIKPANVFITA-TGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIH-ENGYNFKSDIW  220 (310)
T ss_dssp             HHHHHHHHHHHHTTCCCCCCCGGGEEECT-TSCEEECCC------------------CCSSCCHHHHT-TCCCCHHHHHH
T ss_pred             HHHHHHHHHHhhCCeeCCCCcHHHEEEcC-CCCEEEEeccceeeecCCCccccccCCCeeEeChHHhC-CCCCCchhhHH
Confidence            99999999999999999999999999998 89999999999876543         236799999554 45689999999


Q ss_pred             HHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCC
Q 005958          309 CVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  388 (667)
Q Consensus       309 SLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kR  388 (667)
                      ||||++|+|++|..||.+..          .....+...   ......+     ......+++++.+||.+||..||++|
T Consensus       221 slG~il~~l~~g~~p~~~~~----------~~~~~~~~~---~~~~~~~-----~~~~~~~~~~l~~li~~~l~~dp~~R  282 (310)
T 2wqm_A          221 SLGCLLYEMAALQSPFYGDK----------MNLYSLCKK---IEQCDYP-----PLPSDHYSEELRQLVNMCINPDPEKR  282 (310)
T ss_dssp             HHHHHHHHHHHSSCTTC-------------CCHHHHHHH---HHTTCSC-----CCCTTTSCHHHHHHHHHHTCSSGGGS
T ss_pred             HHHHHHHHHHhCCCCCcccc----------hhHHHHHHH---hhcccCC-----CCcccccCHHHHHHHHHHcCCChhhC
Confidence            99999999999999985211          111111111   1111111     01124578899999999999999999


Q ss_pred             CCHHHHHcC
Q 005958          389 ISCLDALRH  397 (667)
Q Consensus       389 pSa~elL~H  397 (667)
                      ||+.+++++
T Consensus       283 ps~~~il~~  291 (310)
T 2wqm_A          283 PDVTYVYDV  291 (310)
T ss_dssp             CCHHHHHHH
T ss_pred             CCHHHHHHH
Confidence            999999863

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=4.5e-40  Score=356.39  Aligned_cols=246  Identities=17%  Similarity=0.164  Sum_probs=190.6

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      .+..++|++.+.||+|+||    .||+|++....  .++..||||+++..   ...+.+.+|+.++++++      ||||
T Consensus        41 ~~~~~~~~~~~~lG~G~fg----~Vy~~~~~~~~--~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~------h~ni  108 (373)
T 2qol_A           41 ELDATNISIDKVVGAGEFG----EVCSGRLKLPS--KKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFD------HPNI  108 (373)
T ss_dssp             BCCGGGCCCCEEEEECSSS----EEEEC-CBCTT--SCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCC------CTTB
T ss_pred             hcCHhhceeeeEEeeCCCe----EEEEEEEecCC--CCceeEEEEEecCccCHHHHHHHHHHHHHHHhCC------CCCC
Confidence            4566899999999999999    99999987321  15788999999753   23456789999999994      9999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      +++++++.     ..+.+++||| |+++|+|.+++...+        ..+++                    ..+..++.
T Consensus       109 v~~~~~~~-----~~~~~~lv~e-~~~~~sL~~~l~~~~--------~~~~~--------------------~~~~~i~~  154 (373)
T 2qol_A          109 IRLEGVVT-----KSKPVMIVTE-YMENGSLDSFLRKHD--------AQFTV--------------------IQLVGMLR  154 (373)
T ss_dssp             CCEEEEEC-----SSSSCEEEEE-CCTTCBHHHHHHTTT--------TCSCH--------------------HHHHHHHH
T ss_pred             CeEEEEEe-----eCCceEEEEe-CCCCCcHHHHHHhCC--------CCCCH--------------------HHHHHHHH
Confidence            99999998     7788999999 999999999998643        13443                    45788999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC------------CCCCCcccccCCCCCCchhh
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG------------PNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~------------~~Y~APE~l~~~~~ys~ksD  306 (667)
                      ||+.||.|||++||+||||||+|||++. ++.+||+|||+++......            ..|+|||++. ...|+.++|
T Consensus       155 qi~~aL~~LH~~~ivH~Dlkp~NIll~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~D  232 (373)
T 2qol_A          155 GIASGMKYLSDMGYVHRDLAARNILINS-NLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIA-YRKFTSASD  232 (373)
T ss_dssp             HHHHHHHHHHHTTCCCSCCCGGGEEECT-TCCEEECCC----------------------CTTSCHHHHH-HCCCCHHHH
T ss_pred             HHHHHHHHHHHCCeeCCCCCcceEEEcC-CCCEEECcCccccccccCCccceeccCCCcCCCccChhhhc-cCCcCchhc
Confidence            9999999999999999999999999998 8999999999998654321            4699999654 456999999


Q ss_pred             HHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCc
Q 005958          307 MRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       307 IWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      ||||||++|||++ |+.||..            .....+...+.....         .+....+++++.+||.+||+.||
T Consensus       233 v~SlG~il~ellt~g~~P~~~------------~~~~~~~~~i~~~~~---------~~~~~~~~~~l~~li~~cl~~dp  291 (373)
T 2qol_A          233 VWSYGIVLWEVMSYGERPYWE------------MSNQDVIKAVDEGYR---------LPPPMDCPAALYQLMLDCWQKDR  291 (373)
T ss_dssp             HHHHHHHHHHHHTTC-CTTTT------------CCHHHHHHHHHTTEE---------CCCCTTCBHHHHHHHHHHTCSSG
T ss_pred             HHHHHHHHHHHHhCCCCCCCC------------CCHHHHHHHHHcCCC---------CCCCccccHHHHHHHHHHhCcCh
Confidence            9999999999998 9999852            222223232222111         12234678899999999999999


Q ss_pred             CCCCCHHHHHc
Q 005958          386 SKRISCLDALR  396 (667)
Q Consensus       386 ~kRpSa~elL~  396 (667)
                      ++||++.++++
T Consensus       292 ~~RPs~~~i~~  302 (373)
T 2qol_A          292 NNRPKFEQIVS  302 (373)
T ss_dssp             GGSCCHHHHHH
T ss_pred             hhCcCHHHHHH
Confidence            99999999886

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=4e-40  Score=346.08  Aligned_cols=257  Identities=15%  Similarity=0.178  Sum_probs=199.3

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcc--hhhHHHHHHHHHHHHHHhhccCCCCC
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS--VQAQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~--~~~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      ....+..++|++.+.||+|+||    .||+|.+..     +++.||||++..  ....+.+.+|+++++.++      ||
T Consensus        22 ~~~~i~~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~------h~   86 (317)
T 2buj_A           22 HMVIIDNKHYLFIQKLGEGGFS----YVDLVEGLH-----DGHFYALKRILCHEQQDREEAQREADMHRLFN------HP   86 (317)
T ss_dssp             EEEEETTEEEEEEEEEEC--CE----EEEEEEETT-----TCCEEEEEEEEESSHHHHHHHHHHHHHHHTCC------CT
T ss_pred             cEEEECCeEEEEEEEecCCCCe----EEEEEEecC-----CCcEEEEEEEecCCHHHHHHHHHHHHHHhhcC------CC
Confidence            4455667889999999999999    999999987     799999999864  234456789999999994      99


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++.... ......|+||| |+.+|+|.+++.....     ....+++                    ..++.+
T Consensus        87 ~iv~~~~~~~~~~-~~~~~~~lv~e-~~~~~~L~~~l~~~~~-----~~~~~~~--------------------~~~~~i  139 (317)
T 2buj_A           87 NILRLVAYCLRER-GAKHEAWLLLP-FFKRGTLWNEIERLKD-----KGNFLTE--------------------DQILWL  139 (317)
T ss_dssp             TBCCCCEEEEEEE-TTEEEEEEEEE-CCTTCBHHHHHHHHHT-----TTCCCCH--------------------HHHHHH
T ss_pred             CeeeEEEEEEecc-CCCceeEEEEE-eCCCCcHHHHHHHHHh-----cCCCCCH--------------------HHHHHH
Confidence            9999999986321 14568999999 9999999999986310     0113444                    567889


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC------------------CCCCCCCcccccCC
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE------------------DGPNNSSPDSNMDR  298 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~------------------~~~~Y~APE~l~~~  298 (667)
                      +.||+.||.|||++||+||||||+|||++. ++.+||+|||++.....                  +.+.|+|||++...
T Consensus       140 ~~qi~~~L~~LH~~~ivH~dlkp~NIl~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  218 (317)
T 2buj_A          140 LLGICRGLEAIHAKGYAHRDLKPTNILLGD-EGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQ  218 (317)
T ss_dssp             HHHHHHHHHHHHHTTEECCCCCGGGEEECT-TSCEEECCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCC
T ss_pred             HHHHHHHHHHHHhCCcccCCCCHHHEEEcC-CCCEEEEecCcchhcccccccccccccccccccccCCcccCCHhHhccC
Confidence            999999999999999999999999999998 89999999999875432                  24679999966543


Q ss_pred             C--CCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHH
Q 005958          299 R--QMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNL  376 (667)
Q Consensus       299 ~--~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dL  376 (667)
                      .  .++.++|||||||++|+|++|+.||......       +.   .........         ...+....+++++.+|
T Consensus       219 ~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~-------~~---~~~~~~~~~---------~~~~~~~~~~~~l~~l  279 (317)
T 2buj_A          219 SHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQK-------GD---SVALAVQNQ---------LSIPQSPRHSSALWQL  279 (317)
T ss_dssp             SEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHT-------TS---CHHHHHHCC-----------CCCCTTSCHHHHHH
T ss_pred             CCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcc-------cc---hhhHHhhcc---------CCCCccccCCHHHHHH
Confidence            3  3789999999999999999999999643211       00   011111110         0122335678899999


Q ss_pred             HHHhhhcCcCCCCCHHHHHcC
Q 005958          377 LSLLLATKPSKRISCLDALRH  397 (667)
Q Consensus       377 I~~~L~~DP~kRpSa~elL~H  397 (667)
                      |.+||+.||++|||+.++++|
T Consensus       280 i~~~l~~dp~~Rps~~~ll~~  300 (317)
T 2buj_A          280 LNSMMTVDPHQRPHIPLLLSQ  300 (317)
T ss_dssp             HHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHhhcChhhCCCHHHHHHH
Confidence            999999999999999999986

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.7e-39  Score=341.56  Aligned_cols=243  Identities=15%  Similarity=0.128  Sum_probs=189.3

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      ..+++|++.+.||+|+||    .||+|++..     +++.||||++....     ..+.+.+|+.++++++      |||
T Consensus        31 ~~~~~y~~~~~lg~G~~g----~Vy~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~------hp~   95 (309)
T 2h34_A           31 TQFGPYRLRRLVGRGGMG----DVYEAEDTV-----RERIVALKLMSETLSSDPVFRTRMQREARTAGRLQ------EPH   95 (309)
T ss_dssp             ---CCEEEEEEEEECSSS----EEEEEEETT-----TTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCC------CTT
T ss_pred             cEeccEEEEEEEcCCCCe----eEEEEEEcC-----CCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcC------CCC
Confidence            456899999999999999    999999987     78999999997532     1255788999999984      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     ..+.+|+||| |+++++|.+++...+         .+++                    ..++.++
T Consensus        96 iv~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~~i~  140 (309)
T 2h34_A           96 VVPIHDFGE-----IDGQLYVDMR-LINGVDLAAMLRRQG---------PLAP--------------------PRAVAIV  140 (309)
T ss_dssp             BCCEEEEEE-----ETTEEEEEEE-CCCCEEHHHHHHHHC---------SCCH--------------------HHHHHHH
T ss_pred             eeEEEEEEe-----eCCeEEEEEE-ecCCCCHHHHHHhcC---------CCCH--------------------HHHHHHH
Confidence            999999998     6789999999 999999999998754         4554                    4577899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC----------CCCCCCcccccCCCCCCchhhH
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED----------GPNNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~----------~~~Y~APE~l~~~~~ys~ksDI  307 (667)
                      .||+.||.|||++||+||||||+|||++. ++.+||+|||++......          .+.|+|||.+. ...++.++||
T Consensus       141 ~qi~~~l~~lH~~~i~H~dlkp~NIl~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di  218 (309)
T 2h34_A          141 RQIGSALDAAHAAGATHRDVKPENILVSA-DDFAYLVDFGIASATTDEKLTQLGNTVGTLYYMAPERFS-ESHATYRADI  218 (309)
T ss_dssp             HHHHHHHHHHHHTTCCCSCCCGGGEEECT-TSCEEECSCCC----------------CCGGGCCGGGTC-C----CCCHH
T ss_pred             HHHHHHHHHHHHCcCCcCCCChHHEEEcC-CCCEEEecCccCccccccccccccccCCCcCccCHHHHc-CCCCCchHhH
Confidence            99999999999999999999999999998 899999999998765432          25699999554 5568999999


Q ss_pred             HHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          308 RCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       308 WSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      |||||++|+|++|+.||....            ...+...+    ....+   ......+.+++++.+||.+||+.||++
T Consensus       219 ~slG~il~~l~~g~~pf~~~~------------~~~~~~~~----~~~~~---~~~~~~~~~~~~l~~li~~~l~~dP~~  279 (309)
T 2h34_A          219 YALTCVLYECLTGSPPYQGDQ------------LSVMGAHI----NQAIP---RPSTVRPGIPVAFDAVIARGMAKNPED  279 (309)
T ss_dssp             HHHHHHHHHHHHSSCSSCSCH------------HHHHHHHH----HSCCC---CGGGTSTTCCTHHHHHHHHHTCSSGGG
T ss_pred             HHHHHHHHHHHHCCCCCCCch------------HHHHHHHh----ccCCC---CccccCCCCCHHHHHHHHHhccCCHHH
Confidence            999999999999999985321            11111111    11111   112234567889999999999999999


Q ss_pred             CC-CHHHHHc
Q 005958          388 RI-SCLDALR  396 (667)
Q Consensus       388 Rp-Sa~elL~  396 (667)
                      || +++++++
T Consensus       280 Rp~s~~~l~~  289 (309)
T 2h34_A          280 RYVTCGDLSA  289 (309)
T ss_dssp             SCSSHHHHHH
T ss_pred             HHHhHHHHHH
Confidence            99 7888775

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=4.8e-40  Score=348.35  Aligned_cols=274  Identities=15%  Similarity=0.150  Sum_probs=192.0

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      ...+.+++|++++.||+|+||    .||+|++       +++.||||++..... .....|.+++..    ..+.||||+
T Consensus         7 ~~~~~~~~y~~~~~lg~G~~g----~Vy~~~~-------~~~~vavK~~~~~~~-~~~~~e~~~~~~----~~~~h~~i~   70 (336)
T 3g2f_A            7 EPSLDLDNLKLLELIGRGRYG----AVYKGSL-------DERPVAVKVFSFANR-QNFINEKNIYRV----PLMEHDNIA   70 (336)
T ss_dssp             --CCCTTSEEEEEEEEECSSE----EEEEEEE-------TTEEEEEEEEEGGGH-HHHHHHHHHHTS----TTCCCTTBC
T ss_pred             CCCcChHHhheeeecccCCCe----EEEEEEE-------CCeEEEEEEeeccch-hhHHHHHHHHHH----HhccCcchh
Confidence            345778999999999999999    9999965       368999999976433 333444444332    123699999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++.+..........+++||| |+++|+|.+++....          +++                    ..+..++.|
T Consensus        71 ~~~~~~~~~~~~~~~~~~lv~e-~~~~g~L~~~l~~~~----------~~~--------------------~~~~~i~~q  119 (336)
T 3g2f_A           71 RFIVGDERVTADGRMEYLLVME-YYPNGSLXKYLSLHT----------SDW--------------------VSSCRLAHS  119 (336)
T ss_dssp             CEEEEEEEECTTSCEEEEEEEC-CCTTCBHHHHHHHCC----------BCH--------------------HHHHHHHHH
T ss_pred             hheecccccccCCCceEEEEEe-cCCCCcHHHHHhhcc----------cch--------------------hHHHHHHHH
Confidence            9998776444445668899999 999999999998653          233                    456789999


Q ss_pred             HHHHHHHHHHC---------CCcccCCCCCcEEEcCCCCeEEEeeecccccccC-----------------CCCCCCCcc
Q 005958          240 LLIGVNYLHSH---------GLAHTELRLENVHISPVDRHIKVGILGNAADFYE-----------------DGPNNSSPD  293 (667)
Q Consensus       240 Il~aL~yLHs~---------gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-----------------~~~~Y~APE  293 (667)
                      |+.||.|||++         ||+||||||+|||++. ++.+||+|||+|+.+..                 +.+.|+|||
T Consensus       120 i~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~-~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE  198 (336)
T 3g2f_A          120 VTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKN-DGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPE  198 (336)
T ss_dssp             HHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECT-TSCEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHH
T ss_pred             HHHHHHHHHhhhccccccccceeecccccceEEEcC-CCcEEEeeccceeecccccccCccccccccccCCCccceeCch
Confidence            99999999999         9999999999999998 89999999999976542                 336899999


Q ss_pred             cccCC------CCCCchhhHHHHHHHHHHHHhCCCCC-hhhh-----hhhhhhhccCCCh-hHHHHHHHHHhccCCCCCC
Q 005958          294 SNMDR------RQMMIAFDMRCVGFMMAKMVLRELMD-PLIF-----TKFKSFLTKGIDP-SCLREFLLQVLNRNSSSGN  360 (667)
Q Consensus       294 ~l~~~------~~ys~ksDIWSLGviLyemltG~~PF-~~~~-----~~~~~~~~~g~~~-~~l~~~~~~~~~~~~~~~~  360 (667)
                      ++.+.      ..++.++|||||||++|||++|..|| +...     ..+.. .....+. .........  ....+...
T Consensus       199 ~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~  275 (336)
T 3g2f_A          199 VLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQT-EVGNHPTFEDMQVLVSR--EKQRPKFP  275 (336)
T ss_dssp             HHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHH-HHCSSCCHHHHHHHHTT--SCCCCCCC
T ss_pred             hhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhhc-ccCCCchHHHHHhhhcc--cccCCCCC
Confidence            76542      35677999999999999999996654 3211     00000 0111111 111111110  01111111


Q ss_pred             CCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHH------HcCCCCCCCC
Q 005958          361 TGFQILDRNWGAGWNLLSLLLATKPSKRISCLDA------LRHPFLCGPR  404 (667)
Q Consensus       361 ~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~el------L~HPwf~~~~  404 (667)
                      .........++++.+||.+||+.||++|||+.|+      +.++|-++..
T Consensus       276 ~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~~~~~~  325 (336)
T 3g2f_A          276 EAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIWERNKS  325 (336)
T ss_dssp             TTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCCCC---
T ss_pred             cccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHHHhccc
Confidence            1111222345689999999999999999999999      4578877654

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=2.9e-39  Score=335.54  Aligned_cols=248  Identities=9%  Similarity=0.087  Sum_probs=192.0

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGY  164 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~  164 (667)
                      .++|++.+.||+|+||    .||+|++..     +++.||||++......+.+.+|+.+++.++      |++++..+..
T Consensus         8 ~~~y~~~~~lg~G~~g----~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~e~~~l~~l~------~~~~i~~~~~   72 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFG----DIYLGTDIA-----AGEEVAIKLECVKTKHPQLHIESKIYKMMQ------GGVGIPTIRW   72 (296)
T ss_dssp             TTTEEEEEEEEEETTE----EEEEEEETT-----TTEEEEEEEEESCSSCCHHHHHHHHHHHHT------TSTTCCCEEE
T ss_pred             ccEEEEEEEEccCCCe----EEEEEEEcC-----CCcEEEEEEecCCcchhHHHHHHHHHHHhh------cCCCCCcccc
Confidence            4789999999999999    999999987     799999999887655567899999999996      6665555554


Q ss_pred             EEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHH
Q 005958          165 VSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGV  244 (667)
Q Consensus       165 ~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL  244 (667)
                      +..    ..+..++||| |+ +|+|.+++....        ..+++                    ..++.++.||+.||
T Consensus        73 ~~~----~~~~~~lv~e-~~-~~~L~~~~~~~~--------~~~~~--------------------~~~~~i~~qi~~~l  118 (296)
T 3uzp_A           73 CGA----EGDYNVMVME-LL-GPSLEDLFNFCS--------RKFSL--------------------KTVLLLADQMISRI  118 (296)
T ss_dssp             EEE----ETTEEEEEEE-CC-CCBHHHHHHHTT--------TCCCH--------------------HHHHHHHHHHHHHH
T ss_pred             ccC----CCCceEEEEE-ec-CCCHHHHHHhhc--------cCCCH--------------------HHHHHHHHHHHHHH
Confidence            431    5678999999 99 669999998532        13554                    45788999999999


Q ss_pred             HHHHHCCCcccCCCCCcEEEc--CCCCeEEEeeecccccccC----------------CCCCCCCcccccCCCCCCchhh
Q 005958          245 NYLHSHGLAHTELRLENVHIS--PVDRHIKVGILGNAADFYE----------------DGPNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       245 ~yLHs~gIvHrDLKPeNILl~--~~~~~vKL~DFGlA~~~~~----------------~~~~Y~APE~l~~~~~ys~ksD  306 (667)
                      .|||++||+||||||+|||++  ..++.+||+|||++.....                +.+.|+|||++. ...++.++|
T Consensus       119 ~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~D  197 (296)
T 3uzp_A          119 EYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHL-GIEQSRRDD  197 (296)
T ss_dssp             HHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHT-TCCCCHHHH
T ss_pred             HHHHhCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccccccccccccccccccccccccCChhhhc-CCCCCcchh
Confidence            999999999999999999995  2278999999999976443                236799999654 455899999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          307 MRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       307 IWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      ||||||++|||++|+.||.....        ......+............      ......+++++.+||.+||+.||+
T Consensus       198 i~slG~il~~l~~g~~pf~~~~~--------~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~li~~~l~~dp~  263 (296)
T 3uzp_A          198 LESLGYVLMYFNLGSLPWQGLKA--------ATKRQKYERISEKKMSTPI------EVLCKGYPSEFATYLNFCRSLRFD  263 (296)
T ss_dssp             HHHHHHHHHHHHHSSCTTSSCCC--------SSSSSHHHHHHHHHHHSCH------HHHTTTSCHHHHHHHHHHHTSCTT
T ss_pred             hHHHHHHHHHHHhCCCCCCCcCc--------hhhhhhhhhhcccccCCch------HHHHhhCCHHHHHHHHHHHhcCcC
Confidence            99999999999999999963211        0111112222221111110      012245788999999999999999


Q ss_pred             CCCCHHHHHc
Q 005958          387 KRISCLDALR  396 (667)
Q Consensus       387 kRpSa~elL~  396 (667)
                      +|||+.++++
T Consensus       264 ~Rps~~~l~~  273 (296)
T 3uzp_A          264 DKPDYSYLRQ  273 (296)
T ss_dssp             CCCCHHHHHH
T ss_pred             cCCCHHHHHH
Confidence            9999999876

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-39  Score=341.47  Aligned_cols=243  Identities=20%  Similarity=0.192  Sum_probs=190.8

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      +..++|++.+.||+|+||    +||+|.+.       ++.||||++......+.+.+|++++++++      ||||++++
T Consensus         5 i~~~~~~~~~~lg~G~~g----~V~~~~~~-------~~~vavK~~~~~~~~~~~~~E~~~l~~l~------hp~iv~~~   67 (307)
T 2eva_A            5 IDYKEIEVEEVVGRGAFG----VVCKAKWR-------AKDVAIKQIESESERKAFIVELRQLSRVN------HPNIVKLY   67 (307)
T ss_dssp             CCGGGEEEEEEEECCSSS----EEEEEEET-------TEEEEEEECSSTTHHHHHHHHHHHHHHCC------CTTBCCEE
T ss_pred             CCHhHeeeeeEeecCCCc----eEEEEEEC-------CeeEEEEEecChhHHHHHHHHHHHHhcCC------CCCcCeEE
Confidence            456899999999999999    99999875       57899999987766677899999999994      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.       +..++||| |+++|+|.+++......+      .+++                    ..+..++.||+.
T Consensus        68 ~~~~-------~~~~lv~e-~~~~~~L~~~l~~~~~~~------~~~~--------------------~~~~~~~~qi~~  113 (307)
T 2eva_A           68 GACL-------NPVCLVME-YAEGGSLYNVLHGAEPLP------YYTA--------------------AHAMSWCLQCSQ  113 (307)
T ss_dssp             EBCT-------TTTEEEEE-CCTTCBHHHHHHCSSSEE------CCCH--------------------HHHHHHHHHHHH
T ss_pred             EEEc-------CCcEEEEE-cCCCCCHHHHHhccCCCC------ccCH--------------------HHHHHHHHHHHH
Confidence            9875       23799999 999999999998654211      2332                    457789999999


Q ss_pred             HHHHHHH---CCCcccCCCCCcEEEcCCCCeEEEeeecccccccC------CCCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          243 GVNYLHS---HGLAHTELRLENVHISPVDRHIKVGILGNAADFYE------DGPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       243 aL~yLHs---~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~------~~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      ||.|||+   +||+||||||+|||++.++..+||+|||++.....      +.+.|+|||++ ....++.++|||||||+
T Consensus       114 ~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~Di~slG~i  192 (307)
T 2eva_A          114 GVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWMAPEVF-EGSNYSEKCDVFSWGII  192 (307)
T ss_dssp             HHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC------------CCTTSSCHHHH-TCCCCCTHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccccccCCCCCceEChhhh-CCCCCCcHHHHHHHHHH
Confidence            9999999   89999999999999998333589999999975543      34789999955 45568999999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      +|||++|+.||...          +........   ......      ..+....+++++.+||.+||+.||++|||+++
T Consensus       193 l~el~~g~~p~~~~----------~~~~~~~~~---~~~~~~------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e  253 (307)
T 2eva_A          193 LWEVITRRKPFDEI----------GGPAFRIMW---AVHNGT------RPPLIKNLPKPIESLMTRCWSKDPSQRPSMEE  253 (307)
T ss_dssp             HHHHHHTCCTTTTT----------CSSHHHHHH---HHHTTC------CCCCBTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHHHHHCCCCchhh----------CccHHHHHH---HHhcCC------CCCcccccCHHHHHHHHHHhcCChhhCcCHHH
Confidence            99999999998532          111111111   111111      12234567899999999999999999999999


Q ss_pred             HHc
Q 005958          394 ALR  396 (667)
Q Consensus       394 lL~  396 (667)
                      +++
T Consensus       254 ll~  256 (307)
T 2eva_A          254 IVK  256 (307)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            987

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=8.2e-40  Score=337.65  Aligned_cols=244  Identities=18%  Similarity=0.186  Sum_probs=191.9

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      +.+..++|++.+.||+|+||    .||+|.+.       ++.||||++......+.+.+|++++++++      ||||++
T Consensus        16 ~~~~~~~y~~~~~lg~G~~g----~V~~~~~~-------~~~vavK~~~~~~~~~~~~~E~~~l~~l~------h~~iv~   78 (278)
T 1byg_A           16 WALNMKELKLLQTIGKGEFG----DVMLGDYR-------GNKVAVKCIKNDATAQAFLAEASVMTQLR------HSNLVQ   78 (278)
T ss_dssp             CBCCGGGEEEEEEEEECSSC----EEEEEEET-------TEEEEEEECCCCC--HHHHHTHHHHTTCC------CTTBCC
T ss_pred             ccCChhhceEEeEEecCCCc----eEEEEEEc-------CCEEEEEEecchhHHHHHHHHHHHHHhCC------CCCEee
Confidence            45667899999999999999    99999864       68999999987666677899999999994      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++..    ..+.+++||| |+++|+|.+++...+.       ..+++                    ..+..++.||
T Consensus        79 ~~~~~~~----~~~~~~lv~e-~~~~~~L~~~l~~~~~-------~~~~~--------------------~~~~~~~~~i  126 (278)
T 1byg_A           79 LLGVIVE----EKGGLYIVTE-YMAKGSLVDYLRSRGR-------SVLGG--------------------DCLLKFSLDV  126 (278)
T ss_dssp             EEEEECC----C--CCEEEEC-CCTTEEHHHHHHHHHH-------HHCCH--------------------HHHHHHHHHH
T ss_pred             EEEEEEc----CCCceEEEEe-cCCCCCHHHHHHhccc-------ccCCH--------------------HHHHHHHHHH
Confidence            9999761    3457899999 9999999999986420       01343                    4578899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC------CCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED------GPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      +.||.|||++||+||||||+||+++. ++.+||+|||++......      .+.|+|||.+. ...++.++|||||||++
T Consensus       127 ~~~l~~lH~~~i~H~dlkp~Nil~~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~slG~il  204 (278)
T 1byg_A          127 CEAMEYLEGNNFVHRDLAARNVLVSE-DNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALR-EKKFSTKSDVWSFGILL  204 (278)
T ss_dssp             HHHHHHHHHTTCCCSCCSGGGEEECT-TSCEEECCCCC------------CCTTTSCHHHHH-HCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCccccCCCcceEEEeC-CCcEEEeeccccccccccccCCCccccccCHHHhC-CCCCCchhcHHHHHHHH
Confidence            99999999999999999999999998 899999999999765432      36799999654 45689999999999999


Q ss_pred             HHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          315 AKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       315 yemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      |+|++ |++||...            +.......+.   ..      ........+++++.+||.+||+.||++|||+.|
T Consensus       205 ~~l~t~g~~p~~~~------------~~~~~~~~~~---~~------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~  263 (278)
T 1byg_A          205 WEIYSFGRVPYPRI------------PLKDVVPRVE---KG------YKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQ  263 (278)
T ss_dssp             HHHHTTSCCSCTTS------------CGGGHHHHHT---TT------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHHHhCCCCCCCCC------------CHHHHHHHHh---cC------CCCCCcccCCHHHHHHHHHHhcCChhhCCCHHH
Confidence            99998 99998522            2222222211   11      112334567899999999999999999999999


Q ss_pred             HHc
Q 005958          394 ALR  396 (667)
Q Consensus       394 lL~  396 (667)
                      +++
T Consensus       264 l~~  266 (278)
T 1byg_A          264 LRE  266 (278)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=1.5e-39  Score=332.70  Aligned_cols=247  Identities=16%  Similarity=0.161  Sum_probs=195.0

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCC
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      ..+..++|++.+.||+|+||    .||+|++.       ++.||||++...    ...+.+.+|+.+++++      .||
T Consensus         5 ~~i~~~~y~~~~~lg~G~~g----~V~~~~~~-------~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~   67 (271)
T 3kmu_A            5 SGIDFKQLNFLTKLNENHSG----ELWKGRWQ-------GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIF------SHP   67 (271)
T ss_dssp             CCCCGGGCEEEEEEEEETTE----EEEEEEET-------TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCC------SCT
T ss_pred             CCCCHHHhHHHHHhcCCCcc----eEEEEEEC-------CeeEEEEEecccccCHHHHHHHHHHHHHHHhc------CCC
Confidence            45677899999999999999    99999985       588999999753    2334578898888888      499


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++...   ..+..++||| |+++|+|.+++.....       ..+++                    ..++.+
T Consensus        68 ~iv~~~~~~~~~---~~~~~~lv~e-~~~~~~L~~~l~~~~~-------~~~~~--------------------~~~~~i  116 (271)
T 3kmu_A           68 NVLPVLGACQSP---PAPHPTLITH-WMPYGSLYNVLHEGTN-------FVVDQ--------------------SQAVKF  116 (271)
T ss_dssp             TEECEEEEECTT---TSSSCEEEEE-CCTTCBHHHHHHSCSS-------CCCCH--------------------HHHHHH
T ss_pred             chhheEEEEccC---CCCCeEeeec-ccCCCcHHHHHhhccc-------CCCCH--------------------HHHHHH
Confidence            999999999833   3478999999 9999999999986431       12444                    567889


Q ss_pred             HHHHHHHHHHHHHCC--CcccCCCCCcEEEcCCCCeEEEeeecccccccCC----CCCCCCcccccCCC--CCCchhhHH
Q 005958          237 MRDLLIGVNYLHSHG--LAHTELRLENVHISPVDRHIKVGILGNAADFYED----GPNNSSPDSNMDRR--QMMIAFDMR  308 (667)
Q Consensus       237 ~~QIl~aL~yLHs~g--IvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~----~~~Y~APE~l~~~~--~ys~ksDIW  308 (667)
                      +.||+.||.|||++|  |+||||||+|||++. ++.++|+|||++......    .+.|+|||.+.+..  .++.++|||
T Consensus       117 ~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~-~~~~~l~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~  195 (271)
T 3kmu_A          117 ALDMARGMAFLHTLEPLIPRHALNSRSVMIDE-DMTARISMADVKFSFQSPGRMYAPAWVAPEALQKKPEDTNRRSADMW  195 (271)
T ss_dssp             HHHHHHHHHHHTTSSSCCTTCCCSGGGEEECT-TSCEEEEGGGSCCTTSCTTCBSCGGGSCHHHHHSCGGGSCHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCceecCCCccceEEEcC-CcceeEEeccceeeecccCccCCccccChhhhccCCCCCCCchhhHH
Confidence            999999999999999  999999999999998 889999988887654433    37899999766543  234489999


Q ss_pred             HHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCC
Q 005958          309 CVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  388 (667)
Q Consensus       309 SLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kR  388 (667)
                      ||||++|||++|+.||...            .......   .......     .......+++++.+||.+||+.||++|
T Consensus       196 slG~il~el~~g~~p~~~~------------~~~~~~~---~~~~~~~-----~~~~~~~~~~~~~~li~~~l~~~p~~R  255 (271)
T 3kmu_A          196 SFAVLLWELVTREVPFADL------------SNMEIGM---KVALEGL-----RPTIPPGISPHVSKLMKICMNEDPAKR  255 (271)
T ss_dssp             HHHHHHHHHHHCSCTTTTS------------CHHHHHH---HHHHSCC-----CCCCCTTCCHHHHHHHHHHTCSSGGGS
T ss_pred             HHHHHHHHHHhCCCCcccc------------ChHHHHH---HHHhcCC-----CCCCCCCCCHHHHHHHHHHcCCChhhC
Confidence            9999999999999998522            1211111   1111111     112345678999999999999999999


Q ss_pred             CCHHHHHc
Q 005958          389 ISCLDALR  396 (667)
Q Consensus       389 pSa~elL~  396 (667)
                      ||++|+++
T Consensus       256 ps~~~il~  263 (271)
T 3kmu_A          256 PKFDMIVP  263 (271)
T ss_dssp             CCHHHHHH
T ss_pred             cCHHHHHH
Confidence            99999986

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.5e-39  Score=335.94  Aligned_cols=245  Identities=16%  Similarity=0.172  Sum_probs=195.8

Q ss_pred             ccccCCeEEEe-EeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           82 RFNMGDFKILD-RVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        82 ~~~~~~y~i~~-~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      .+..++|.+.+ .||+|+||    .||+|.+....   ++..||||+++..   ...+.+.+|+++++.++      |||
T Consensus         5 ~~~~~~~~i~~~~lg~G~~g----~Vy~~~~~~~~---~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~------h~~   71 (287)
T 1u59_A            5 FLKRDNLLIADIELGCGNFG----SVRQGVYRMRK---KQIDVAIKVLKQGTEKADTEEMMREAQIMHQLD------NPY   71 (287)
T ss_dssp             BCCGGGEEEEEEEEECCTTE----EEEEEEEC------CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCC------CTT
T ss_pred             cccHHHhhhhhccccccCce----eEEEeEeccCC---CcceEEEEecCCccchhHHHHHHHHHHHHHhCC------CCC
Confidence            45567888887 99999999    99999875321   5788999999863   23456789999999994      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     . +..++||| |+++|+|.+++....        ..+++                    ..++.++
T Consensus        72 i~~~~~~~~-----~-~~~~lv~e-~~~~~~L~~~l~~~~--------~~~~~--------------------~~~~~~~  116 (287)
T 1u59_A           72 IVRLIGVCQ-----A-EALMLVME-MAGGGPLHKFLVGKR--------EEIPV--------------------SNVAELL  116 (287)
T ss_dssp             BCCEEEEEE-----S-SSEEEEEE-CCTTEEHHHHHTTCT--------TTSCH--------------------HHHHHHH
T ss_pred             EeEEEEEec-----C-CCcEEEEE-eCCCCCHHHHHHhCC--------ccCCH--------------------HHHHHHH
Confidence            999999986     3 45899999 999999999997532        13454                    4578899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC------------CCCCCCcccccCCCCCCchh
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED------------GPNNSSPDSNMDRRQMMIAF  305 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------------~~~Y~APE~l~~~~~ys~ks  305 (667)
                      .||+.||.|||++||+||||||+|||++. ++.+||+|||++......            .+.|+|||++. ...++.++
T Consensus       117 ~qi~~~l~~lH~~~i~H~dlkp~Nili~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~  194 (287)
T 1u59_A          117 HQVSMGMKYLEEKNFVHRDLAARNVLLVN-RHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECIN-FRKFSSRS  194 (287)
T ss_dssp             HHHHHHHHHHHHTTEECCCCSGGGEEEEE-TTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHH-HCEECHHH
T ss_pred             HHHHHHHHHHHHCCEeeCCCchheEEEcC-CCCEEECcccceeeeccCcceeeccccccccccccCHHHhc-cCCCCchh
Confidence            99999999999999999999999999998 899999999999866432            14599999654 45589999


Q ss_pred             hHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          306 DMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       306 DIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      |||||||++|||++ |++||..            .........+..   ..      .......+++++.+||.+||+.|
T Consensus       195 Di~slG~il~ellt~g~~p~~~------------~~~~~~~~~i~~---~~------~~~~~~~~~~~l~~li~~~l~~~  253 (287)
T 1u59_A          195 DVWSYGVTMWEALSYGQKPYKK------------MKGPEVMAFIEQ---GK------RMECPPECPPELYALMSDCWIYK  253 (287)
T ss_dssp             HHHHHHHHHHHHHTTSCCTTTT------------CCTHHHHHHHHT---TC------CCCCCTTCCHHHHHHHHHTTCSS
T ss_pred             hHHHHHHHHHHHHcCCCCCccc------------CCHHHHHHHHhc---CC------cCCCCCCcCHHHHHHHHHHcCCC
Confidence            99999999999998 9999852            222222222221   11      12234567899999999999999


Q ss_pred             cCCCCCHHHHHcC
Q 005958          385 PSKRISCLDALRH  397 (667)
Q Consensus       385 P~kRpSa~elL~H  397 (667)
                      |++||++.++++|
T Consensus       254 p~~Rps~~~l~~~  266 (287)
T 1u59_A          254 WEDRPDFLTVEQR  266 (287)
T ss_dssp             GGGSCCHHHHHHH
T ss_pred             hhhCcCHHHHHHH
Confidence            9999999999986

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.6e-39  Score=345.22  Aligned_cols=242  Identities=14%  Similarity=0.135  Sum_probs=191.2

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCc----EEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCC
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNT----KVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMY  154 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~----~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~  154 (667)
                      .+..++|++++.||+|+||    .||+|++..     +++    +||+|.+...   ...+.+.+|+.+++.++      
T Consensus        11 ~l~~~~y~~~~~lG~G~~g----~Vy~~~~~~-----~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~------   75 (327)
T 3lzb_A           11 ILKETEFKKIKVLGSGAFG----TVYKGLWIP-----EGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD------   75 (327)
T ss_dssp             ECCTTTEEEEEEEEECSSE----EEEEEEECC-----TTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCC------
T ss_pred             ccCHhHceEEEEeeeCCCe----EEEEEEEcC-----CCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCC------
Confidence            4556899999999999999    999999987     444    4577777532   24466789999999994      


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      ||||+++++++.     .. ..++||| ++.+|+|.+++....        ..+++                    ..++
T Consensus        76 hp~iv~~~~~~~-----~~-~~~~v~~-~~~~g~L~~~l~~~~--------~~~~~--------------------~~~~  120 (327)
T 3lzb_A           76 NPHVCRLLGICL-----TS-TVQLITQ-LMPFGCLLDYVREHK--------DNIGS--------------------QYLL  120 (327)
T ss_dssp             BTTBCCCCEEEE-----SS-SEEEEEC-CCSSCBHHHHHHHTT--------TCCCH--------------------HHHH
T ss_pred             CCCeeEEEEEEe-----cC-CceEEEE-ecCCCcHHHHHHhcC--------CCCCH--------------------HHHH
Confidence            999999999998     43 4889999 999999999998743        13444                    4578


Q ss_pred             HHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-----------CCCCCcccccCCCCCCc
Q 005958          235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-----------PNNSSPDSNMDRRQMMI  303 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-----------~~Y~APE~l~~~~~ys~  303 (667)
                      .++.||+.||.|||++||+||||||+|||++. ++.+||+|||+|+......           +.|+|||.+. ...|+.
T Consensus       121 ~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~-~~~~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~  198 (327)
T 3lzb_A          121 NWCVQIAKGMNYLEDRRLVHRDLAARNVLVKT-PQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESIL-HRIYTH  198 (327)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEE-TTEEEECCTTC----------------CCCGGGSCHHHHH-HCCCCH
T ss_pred             HHHHHHHHHHHHHhhCCCcCCCCCHHHEEEcC-CCCEEEccCcceeEccCccccccccCCCccccccCHHHHc-CCCCCh
Confidence            89999999999999999999999999999998 8999999999998654322           3699999655 456999


Q ss_pred             hhhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhh
Q 005958          304 AFDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLA  382 (667)
Q Consensus       304 ksDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~  382 (667)
                      ++|||||||++|||++ |.+||.            +.+...+...+....         ..+....+++++.+||.+||+
T Consensus       199 ~~Di~slG~il~ell~~g~~p~~------------~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~li~~~l~  257 (327)
T 3lzb_A          199 QSDVWSYGVTVWELMTFGSKPYD------------GIPASEISSILEKGE---------RLPQPPICTIDVYMIMRKCWM  257 (327)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCTTT------------TCCGGGHHHHHHTTC---------CCCCCTTBCHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCC------------CCCHHHHHHHHHcCC---------CCCCCccCCHHHHHHHHHHcC
Confidence            9999999999999999 999985            233333333332211         122345678899999999999


Q ss_pred             cCcCCCCCHHHHHc
Q 005958          383 TKPSKRISCLDALR  396 (667)
Q Consensus       383 ~DP~kRpSa~elL~  396 (667)
                      .||++|||+.|+++
T Consensus       258 ~dp~~Rps~~ell~  271 (327)
T 3lzb_A          258 IDADSRPKFRELII  271 (327)
T ss_dssp             SSGGGSCCHHHHHH
T ss_pred             CChhHCcCHHHHHH
Confidence            99999999999987

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=3.1e-39  Score=335.78  Aligned_cols=248  Identities=18%  Similarity=0.220  Sum_probs=189.2

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCC
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMY  154 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~  154 (667)
                      ...++..++|++.+.||+|+||    +||+|.+.        ..||+|+++..    ...+.+.+|+.++++++      
T Consensus        17 ~~~ei~~~~y~~~~~lG~G~~g----~Vy~~~~~--------~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~------   78 (289)
T 3og7_A           17 DDWEIPDGQITVGQRIGSGSFG----TVYKGKWH--------GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTR------   78 (289)
T ss_dssp             -CCBCCTTSCEEEEEEEECSSE----EEEEEESS--------SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCC------
T ss_pred             CCCccCccceeeeeEecCCCCe----EEEEEEEc--------CceEEEEEeccCCCHHHHHHHHHHHHHHHhCC------
Confidence            3456777899999999999999    99999754        34999999742    23356789999999994      


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      ||||++++++.      .....++||| |+++++|.+++....        ..+++                    ..+.
T Consensus        79 h~~iv~~~~~~------~~~~~~lv~e-~~~~~~L~~~l~~~~--------~~~~~--------------------~~~~  123 (289)
T 3og7_A           79 HVNILLFMGYS------TAPQLAIVTQ-WCEGSSLYHHLHASE--------TKFEM--------------------KKLI  123 (289)
T ss_dssp             CTTBCCEEEEE------CSSSCEEEEE-CCCEEEHHHHHTTC-----------CCH--------------------HHHH
T ss_pred             CCcEEEEEeec------cCCccEEEEE-ecCCCcHHHHHhhcc--------CCCCH--------------------HHHH
Confidence            99999999965      4556899999 999999999996542        13443                    4578


Q ss_pred             HHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-----------CCCCCCCccccc--CCCCC
Q 005958          235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-----------DGPNNSSPDSNM--DRRQM  301 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-----------~~~~Y~APE~l~--~~~~y  301 (667)
                      .++.||+.||.|||++||+||||||+|||++. ++.+||+|||++.....           +.+.|+|||++.  ....+
T Consensus       124 ~i~~qi~~~L~~lH~~~i~H~Dlkp~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  202 (289)
T 3og7_A          124 DIARQTARGMDYLHAKSIIHRDLKSNNIFLHE-DNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPY  202 (289)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSCCCGGGEEEET-TTEEEECCCC------------------CCCTTCCHHHHC----CCS
T ss_pred             HHHHHHHHHHHHHHhCCcccccCccceEEECC-CCCEEEccceeccccccccccccccccCCCccccCchhhcccCCCCC
Confidence            89999999999999999999999999999998 89999999999975432           247899999664  35568


Q ss_pred             CchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhh
Q 005958          302 MIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLL  381 (667)
Q Consensus       302 s~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L  381 (667)
                      +.++|||||||++|+|++|+.||...           .....+.+.+........     .......+++++.+||.+||
T Consensus       203 ~~~~Di~slG~il~el~~g~~p~~~~-----------~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~li~~~l  266 (289)
T 3og7_A          203 SFQSDVYAFGIVLYELMTGQLPYSNI-----------NNRDQIIEMVGRGSLSPD-----LSKVRSNCPKRMKRLMAECL  266 (289)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCTTSSC-----------CCHHHHHHHHHHTSCCCC-----TTSSCTTSCHHHHHHHHHHT
T ss_pred             CcccchHHHHHHHHHHHHCCCCcccc-----------chHHHHHHHhcccccCcc-----hhhccccCCHHHHHHHHHHc
Confidence            99999999999999999999998521           222223333222111100     11223467899999999999


Q ss_pred             hcCcCCCCCHHHHHc
Q 005958          382 ATKPSKRISCLDALR  396 (667)
Q Consensus       382 ~~DP~kRpSa~elL~  396 (667)
                      +.||++|||+.++++
T Consensus       267 ~~~p~~Rps~~ell~  281 (289)
T 3og7_A          267 KKKRDERPSFPRILA  281 (289)
T ss_dssp             CSSGGGSCCHHHHHH
T ss_pred             cCChhhCCCHHHHHH
Confidence            999999999999986

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=1.1e-39  Score=362.15  Aligned_cols=245  Identities=15%  Similarity=0.186  Sum_probs=198.1

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      ..+.+..++|++.+.||+|+||    .||+|.+..      +..||||+++... ..+.+.+|+.+|++++      |||
T Consensus       181 ~~~~i~~~~~~~~~~lG~G~fg----~V~~~~~~~------~~~vavK~~~~~~~~~~~~~~E~~~l~~l~------h~~  244 (454)
T 1qcf_A          181 DAWEIPRESLKLEKKLGAGQFG----EVWMATYNK------HTKVAVKTMKPGSMSVEAFLAEANVMKTLQ------HDK  244 (454)
T ss_dssp             TCSBCCGGGEEEEEEEECCSSE----EEEEEEETT------TEEEEEEEECTTSBCHHHHHHHHHHHTTCC------CTT
T ss_pred             cceeechHHeEEEEEcccCCce----EEEEEEECC------ccEEEEEEecCCCccHHHHHHHHHHHhhCC------CCC
Confidence            3456677899999999999999    999999874      6889999998632 3467889999999994      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.      .+.+||||| |+.+|+|.+++....       ...++                    ...+..++
T Consensus       245 iv~l~~~~~------~~~~~lv~e-~~~~g~L~~~l~~~~-------~~~~~--------------------~~~~~~~~  290 (454)
T 1qcf_A          245 LVKLHAVVT------KEPIYIITE-FMAKGSLLDFLKSDE-------GSKQP--------------------LPKLIDFS  290 (454)
T ss_dssp             BCCEEEEEC------SSSCEEEEC-CCTTCBHHHHHHSHH-------HHTCC--------------------HHHHHHHH
T ss_pred             EeeEEEEEe------CCccEEEEe-ecCCCcHHHHHHhcc-------CCCCC--------------------HHHHHHHH
Confidence            999999975      356899999 999999999997532       01233                    34577899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC----------CCCCCCcccccCCCCCCchhhH
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED----------GPNNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~----------~~~Y~APE~l~~~~~ys~ksDI  307 (667)
                      .||+.||+|||++||+||||||+|||++. ++.+||+|||+|+.....          ...|+|||++. ...|+.++||
T Consensus       291 ~qi~~~l~~LH~~~ivHrDlkp~Nill~~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Dv  368 (454)
T 1qcf_A          291 AQIAEGMAFIEQRNYIHRDLRAANILVSA-SLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAIN-FGSFTIKSDV  368 (454)
T ss_dssp             HHHHHHHHHHHHTTCCCSSCSGGGEEECT-TCCEEECSTTGGGGBCCHHHHTTCSSSSCGGGSCHHHHH-HCCCCHHHHH
T ss_pred             HHHHHHHHHHHhCCccCCCCCHHHEEECC-CCcEEEeeCCCceEcCCCceeccCCCcccccccCHHHhc-cCCCCcHHHH
Confidence            99999999999999999999999999998 899999999999865421          14699999654 4569999999


Q ss_pred             HHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          308 RCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       308 WSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      |||||++|||++ |++||.+            ....++...+....         ..+....+++++.+||.+||+.||+
T Consensus       369 wslG~~l~el~t~g~~P~~~------------~~~~~~~~~i~~~~---------~~~~~~~~~~~l~~li~~cl~~dp~  427 (454)
T 1qcf_A          369 WSFGILLMEIVTYGRIPYPG------------MSNPEVIRALERGY---------RMPRPENCPEELYNIMMRCWKNRPE  427 (454)
T ss_dssp             HHHHHHHHHHHTTSCCSSTT------------CCHHHHHHHHHHTC---------CCCCCTTSCHHHHHHHHHHTCSSGG
T ss_pred             HhHHHHHHHHHhCCCCCCCC------------CCHHHHHHHHHcCC---------CCCCCCCCCHHHHHHHHHHccCChh
Confidence            999999999999 9999853            23333333322211         1223456789999999999999999


Q ss_pred             CCCCHHHHHc
Q 005958          387 KRISCLDALR  396 (667)
Q Consensus       387 kRpSa~elL~  396 (667)
                      +|||++++++
T Consensus       428 ~RPt~~~i~~  437 (454)
T 1qcf_A          428 ERPTFEYIQS  437 (454)
T ss_dssp             GSCCHHHHHH
T ss_pred             HCcCHHHHHH
Confidence            9999999875

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4.7e-39  Score=342.20  Aligned_cols=249  Identities=14%  Similarity=0.168  Sum_probs=194.3

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      .++..++|++.+.||+|+||    .||+|.+...+ ...+..||||++...   .....+.+|+.+++.++      |||
T Consensus        39 ~~i~~~~~~~~~~lG~G~~g----~Vy~~~~~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~------h~~  107 (333)
T 1mqb_A           39 TEIHPSCVTRQKVIGAGEFG----EVYKGMLKTSS-GKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFS------HHN  107 (333)
T ss_dssp             CBCCTTTEEEEEEEEECSSS----EEEEEEEEC----CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCC------CTT
T ss_pred             ccCChHHhhcccEEecCCCe----EEEEEEEecCC-CCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCC------CCC
Confidence            35567899999999999999    99999987521 112457999999753   23345789999999994      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     ..+..++||| |+++|+|.+++....        ..+++                    ..+..++
T Consensus       108 iv~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~--------~~~~~--------------------~~~~~i~  153 (333)
T 1mqb_A          108 IIRLEGVIS-----KYKPMMIITE-YMENGALDKFLREKD--------GEFSV--------------------LQLVGML  153 (333)
T ss_dssp             BCCEEEEEC-----SSSSEEEEEE-CCTTEEHHHHHHHTT--------TCSCH--------------------HHHHHHH
T ss_pred             CCcEEEEEe-----cCCCcEEEEe-CCCCCcHHHHHHhCC--------CCCCH--------------------HHHHHHH
Confidence            999999998     7789999999 999999999998642        13444                    4578899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC------------CCCCCcccccCCCCCCchh
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG------------PNNSSPDSNMDRRQMMIAF  305 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~------------~~Y~APE~l~~~~~ys~ks  305 (667)
                      .||+.||.|||++||+||||||+|||++. ++.+||+|||++.......            +.|+|||++. ...++.++
T Consensus       154 ~qi~~aL~~LH~~~ivH~Dikp~NIl~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~  231 (333)
T 1mqb_A          154 RGIAAGMKYLANMNYVHRDLAARNILVNS-NLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAIS-YRKFTSAS  231 (333)
T ss_dssp             HHHHHHHHHHHHTTCCCSCCCGGGEEECT-TCCEEECCCCC-----------------CCCGGGSCHHHHH-SCCCCHHH
T ss_pred             HHHHHHHHHHHhCCeeCCCCChheEEECC-CCcEEECCCCcchhhccccccccccCCCCccccccCchhcc-cCCCCchh
Confidence            99999999999999999999999999998 8999999999998654321            3599999654 45689999


Q ss_pred             hHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          306 DMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       306 DIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      |||||||++|||++ |+.||..            .....+...+.   ...      ..+....+++++.+||.+||+.|
T Consensus       232 Di~slG~il~ellt~g~~pf~~------------~~~~~~~~~~~---~~~------~~~~~~~~~~~l~~li~~~l~~~  290 (333)
T 1mqb_A          232 DVWSFGIVMWEVMTYGERPYWE------------LSNHEVMKAIN---DGF------RLPTPMDCPSAIYQLMMQCWQQE  290 (333)
T ss_dssp             HHHHHHHHHHHHHTTSCCTTTT------------CCHHHHHHHHH---TTC------CCCCCTTCBHHHHHHHHHHTCSS
T ss_pred             hhHHHHHHHHHHHcCCCCCccc------------CCHHHHHHHHH---CCC------cCCCcccCCHHHHHHHHHHcCCC
Confidence            99999999999998 9999852            22222222221   111      12233467899999999999999


Q ss_pred             cCCCCCHHHHHcC
Q 005958          385 PSKRISCLDALRH  397 (667)
Q Consensus       385 P~kRpSa~elL~H  397 (667)
                      |++||++.+++++
T Consensus       291 p~~Rps~~~l~~~  303 (333)
T 1mqb_A          291 RARRPKFADIVSI  303 (333)
T ss_dssp             TTTSCCHHHHHHH
T ss_pred             hhhCcCHHHHHHH
Confidence            9999999999864

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=3e-40  Score=348.76  Aligned_cols=267  Identities=16%  Similarity=0.145  Sum_probs=200.2

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh---HHHHHHHHHHHHHHhhccCCCCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA---QRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~---~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      ......++|++.+.||+|+||    .||+|.+.      +++.||||++.....   ...+.+|+.+++.+      .||
T Consensus        24 ~~~~~~~~y~~~~~lg~G~~g----~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l------~h~   87 (326)
T 3uim_A           24 ELQVASDNFSNKNILGRGGFG----KVYKGRLA------DGTLVAVKRLKEERTQGGELQFQTEVEMISMA------VHR   87 (326)
T ss_dssp             HHHTTTTSSCSTTEEECCSSS----EEEEECCS------SSCCEEEEECCC-----CCCHHHHHHHGGGTC------CCT
T ss_pred             HHHHHhhccccceeEecCCCc----EEEEEEec------CCCEEEEEEeccccCchHHHHHHHHHHHHHhc------cCC
Confidence            344556899999999999999    99999854      589999999976432   22578899999888      499


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++.     ..+..++||| |+++|+|.+++.......     ..++                    ...++.+
T Consensus        88 ~iv~~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~~~~-----~~~~--------------------~~~~~~i  136 (326)
T 3uim_A           88 NLLRLRGFCM-----TPTERLLVYP-YMANGSVASCLRERPESQ-----PPLD--------------------WPKRQRI  136 (326)
T ss_dssp             TBCCCCEEEC-----CSSCCEEEEE-CCTTCBHHHHHHCCSTTC-----CCCC--------------------HHHHHHH
T ss_pred             CccceEEEEe-----cCCceEEEEE-eccCCCHHHHHHhccccC-----CCCC--------------------HHHHHHH
Confidence            9999999998     7788899999 999999999998753111     1234                    3567889


Q ss_pred             HHHHHHHHHHHHHC---CCcccCCCCCcEEEcCCCCeEEEeeecccccccC----------CCCCCCCcccccCCCCCCc
Q 005958          237 MRDLLIGVNYLHSH---GLAHTELRLENVHISPVDRHIKVGILGNAADFYE----------DGPNNSSPDSNMDRRQMMI  303 (667)
Q Consensus       237 ~~QIl~aL~yLHs~---gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~----------~~~~Y~APE~l~~~~~ys~  303 (667)
                      +.||+.||.|||++   ||+||||||+|||++. ++.+||+|||++.....          +.+.|+|||++. ...++.
T Consensus       137 ~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~  214 (326)
T 3uim_A          137 ALGSARGLAYLHDHCDPKIIHRDVKAANILLDE-EFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLS-TGKSSE  214 (326)
T ss_dssp             HHHHHHHHHHHHHSSSSCEECCCCSGGGEEECT-TCCEEECCCSSCEECCSSSSCEECCCCSCGGGCCHHHHH-HSEECH
T ss_pred             HHHHHHHHHHHHhCCCCCeEeCCCchhhEEECC-CCCEEeccCccccccCcccccccccccCCcCccCHHHhc-cCCCCc
Confidence            99999999999999   9999999999999998 89999999999976542          236799999654 445899


Q ss_pred             hhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCC----CcccccCCCHHHHHHHHH
Q 005958          304 AFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNT----GFQILDRNWGAGWNLLSL  379 (667)
Q Consensus       304 ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~s~e~~dLI~~  379 (667)
                      ++|||||||++|+|++|++||......       ........+++.............    ........++++.+||.+
T Consensus       215 ~~Di~slG~il~~l~~g~~pf~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  287 (326)
T 3uim_A          215 KTDVFGYGVMLLELITGQRAFDLARLA-------NDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALL  287 (326)
T ss_dssp             HHHHHHHHHHHHHHHHCCCSBCHHHHT-------TTSCSBHHHHHTTTTSSCCSTTSSCTTCTTSCCHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHhCCCcccccccc-------cccchhHHHHHHHHhhchhhhhhcChhhccccCHHHHHHHHHHHHH
Confidence            999999999999999999999632110       011111222222111111110000    011122344689999999


Q ss_pred             hhhcCcCCCCCHHHHHcCCCCCC
Q 005958          380 LLATKPSKRISCLDALRHPFLCG  402 (667)
Q Consensus       380 ~L~~DP~kRpSa~elL~HPwf~~  402 (667)
                      ||+.||++|||+.|+++|-.-..
T Consensus       288 cl~~dP~~Rps~~ell~~L~~~~  310 (326)
T 3uim_A          288 CTQSSPMERPKMSEVVRMLEGDG  310 (326)
T ss_dssp             HTCSCGGGSCCHHHHHHHHHTSS
T ss_pred             HhCcCCccCCCHHHHHHHhcCcc
Confidence            99999999999999999865433

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=2.1e-39  Score=334.38  Aligned_cols=244  Identities=16%  Similarity=0.197  Sum_probs=195.7

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      .+.+..++|++.+.||+|+||    .||+|.+.      .+..||+|++.... ..+.+.+|+++++.++      ||||
T Consensus         7 ~~~v~~~~y~~~~~lg~G~~g----~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~------h~~i   70 (279)
T 1qpc_A            7 EWEVPRETLKLVERLGAGQFG----EVWMGYYN------GHTKVAVKSLKQGSMSPDAFLAEANLMKQLQ------HQRL   70 (279)
T ss_dssp             TTBCCGGGEEEEEEEEEETTE----EEEEEEET------TTEEEEEEEECTTSSCHHHHHHHHHHHHHCC------CTTB
T ss_pred             hcccCHHhhhheeeecCCCCe----EEEEEEEc------CCcEEEEEEecCCcccHHHHHHHHHHHHhCC------CcCc
Confidence            345566899999999999999    99999976      46789999997643 3466789999999994      9999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      +++++++.      .+..++||| |+++|+|.+++....       ...+++                    ..+..++.
T Consensus        71 ~~~~~~~~------~~~~~~v~e-~~~~~~L~~~l~~~~-------~~~~~~--------------------~~~~~i~~  116 (279)
T 1qpc_A           71 VRLYAVVT------QEPIYIITE-YMENGSLVDFLKTPS-------GIKLTI--------------------NKLLDMAA  116 (279)
T ss_dssp             CCEEEEEC------SSSCEEEEE-CCTTCBHHHHTTSHH-------HHTCCH--------------------HHHHHHHH
T ss_pred             ceEEEEEc------CCCcEEEEe-cCCCCCHHHHHhcCC-------CCCCCH--------------------HHHHHHHH
Confidence            99999985      345899999 999999999987531       013443                    45788999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC----------CCCCCcccccCCCCCCchhhHH
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG----------PNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~----------~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      ||+.||.|||++||+||||||+|||++. ++.+||+|||++.......          ..|+|||.+. ...++.++|||
T Consensus       117 qi~~~l~~lH~~~i~H~dikp~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~  194 (279)
T 1qpc_A          117 QIAEGMAFIEERNYIHRDLRAANILVSD-TLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAIN-YGTFTIKSDVW  194 (279)
T ss_dssp             HHHHHHHHHHHTTEECSCCSGGGEEECT-TSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHH-HCEECHHHHHH
T ss_pred             HHHHHHHHHHHCCeeccCCCHhhEEEcC-CCCEEECCCcccccccCcccccccCCCCccCccChhhhc-cCCCCchhhhH
Confidence            9999999999999999999999999998 8999999999998654322          4699999654 45689999999


Q ss_pred             HHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          309 CVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       309 SLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      ||||++|||++ |++||.+            .........+..   ..      .......+++++.+||.+||..||++
T Consensus       195 slG~il~el~~~g~~p~~~------------~~~~~~~~~~~~---~~------~~~~~~~~~~~l~~li~~~l~~~p~~  253 (279)
T 1qpc_A          195 SFGILLTEIVTHGRIPYPG------------MTNPEVIQNLER---GY------RMVRPDNCPEELYQLMRLCWKERPED  253 (279)
T ss_dssp             HHHHHHHHHHTTTCCSSTT------------CCHHHHHHHHHT---TC------CCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             HHHHHHHHHHhCCCCCCcc------------cCHHHHHHHHhc---cc------CCCCcccccHHHHHHHHHHhccChhh
Confidence            99999999999 9999852            222222222211   11      11223467899999999999999999


Q ss_pred             CCCHHHHHc
Q 005958          388 RISCLDALR  396 (667)
Q Consensus       388 RpSa~elL~  396 (667)
                      |||+.++++
T Consensus       254 Rps~~~l~~  262 (279)
T 1qpc_A          254 RPTFDYLRS  262 (279)
T ss_dssp             SCCHHHHHH
T ss_pred             CCCHHHHHH
Confidence            999999876

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=8.2e-40  Score=345.31  Aligned_cols=257  Identities=17%  Similarity=0.174  Sum_probs=195.3

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ...++|++.+.||+|+||    .||+|.+.      +++.||||++...  ...+.+.+|+.+++.+      .||||++
T Consensus        36 ~~~~~y~~~~~lg~G~~g----~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~   99 (321)
T 2qkw_B           36 EATNNFDHKFLIGHGVFG----KVYKGVLR------DGAKVALKRRTPESSQGIEEFETEIETLSFC------RHPHLVS   99 (321)
T ss_dssp             CCCCCCSCCCCSCBCSSS----EEEEEECT------TCCEEEEEECCSCCSSHHHHHHHHHHGGGSC------CCTTBCC
T ss_pred             HHHhccCccceeecCCCe----eEEEEEEC------CCCEEEEEEecccChHHHHHHHHHHHHHHhC------CCCCEee
Confidence            345899999999999999    99999965      5899999998753  2345678999999988      4999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     ..+..++||| |+++|+|.+++......     ...++                    ...+..++.||
T Consensus       100 ~~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~~~-----~~~~~--------------------~~~~~~i~~~i  148 (321)
T 2qkw_B          100 LIGFCD-----ERNEMILIYK-YMENGNLKRHLYGSDLP-----TMSMS--------------------WEQRLEICIGA  148 (321)
T ss_dssp             EEEECC-----CTTCCEEEEE-CCTTCBTGGGSSSSCCC-----SCCCC--------------------HHHHHHHHHHH
T ss_pred             EEEEEc-----CCCeEEEEEE-cCCCCcHHHHHhccCCC-----ccccC--------------------HHHHHHHHHHH
Confidence            999998     7788999999 99999999988654311     01233                    45678899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-----------CCCCCCCcccccCCCCCCchhhHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-----------DGPNNSSPDSNMDRRQMMIAFDMRC  309 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-----------~~~~Y~APE~l~~~~~ys~ksDIWS  309 (667)
                      +.||.|||++||+||||||+|||++. ++.+||+|||++.....           +.+.|+|||++.+ ..++.++||||
T Consensus       149 ~~~l~~lH~~~ivH~dlkp~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Di~s  226 (321)
T 2qkw_B          149 ARGLHYLHTRAIIHRDVKSINILLDE-NFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIK-GRLTEKSDVYS  226 (321)
T ss_dssp             HHHHHHHHHTTEECSCCCSTTEEECT-TCCEEECCCTTCEECSSSSCCCCBCCCEEETTTCCHHHHHH-CBCCTHHHHHH
T ss_pred             HHHHHHhcCCCeecCCCCHHHEEECC-CCCEEEeecccccccccccccccccccCCCccccCHHHhcC-CCCCcccchHh
Confidence            99999999999999999999999998 89999999999975432           1367999996544 45899999999


Q ss_pred             HHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccC-CCC---CCCCcccccCCCHHHHHHHHHhhhcCc
Q 005958          310 VGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRN-SSS---GNTGFQILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       310 LGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~-~~~---~~~~~~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      |||++|||++|+.||......         ......++........ ...   ........+..+.++.+||.+||+.||
T Consensus       227 lG~il~ell~g~~p~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP  297 (321)
T 2qkw_B          227 FGVVLFEVLCARSAIVQSLPR---------EMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSS  297 (321)
T ss_dssp             HHHHHHHHHHCCTTCSCSSSS---------SCCCHHHHTHHHHTTTCCCSSSSSSCTTCSCHHHHHHHHHHHHHHTCSSG
T ss_pred             HHHHHHHHHhCCCcccccCcH---------HHHHHHHHhhhccccccHHHhcChhhccccCHHHHHHHHHHHHHHcCCCc
Confidence            999999999999998632110         0001111111111000 000   000011223455789999999999999


Q ss_pred             CCCCCHHHHHcC
Q 005958          386 SKRISCLDALRH  397 (667)
Q Consensus       386 ~kRpSa~elL~H  397 (667)
                      ++|||+.|+++|
T Consensus       298 ~~Rps~~ell~~  309 (321)
T 2qkw_B          298 EDRPSMGDVLWK  309 (321)
T ss_dssp             GGSCCHHHHHHH
T ss_pred             ccCcCHHHHHHH
Confidence            999999999976

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2e-39  Score=343.00  Aligned_cols=263  Identities=17%  Similarity=0.208  Sum_probs=186.8

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ....++|++.+.||+|+||    .||+|++.       ++.||||++.... .....+|.+++..+.    +.||||+++
T Consensus        33 ~~~~~~y~~~~~lg~G~~g----~V~~~~~~-------~~~vavK~~~~~~-~~~~~~e~~~~~~~~----~~h~~i~~~   96 (337)
T 3mdy_A           33 RTIAKQIQMVKQIGKGRYG----EVWMGKWR-------GEKVAVKVFFTTE-EASWFRETEIYQTVL----MRHENILGF   96 (337)
T ss_dssp             TTHHHHCEEEEEEEEETTE----EEEEEEET-------TEEEEEEEEEGGG-HHHHHHHHHHHTSTT----CCCTTBCCE
T ss_pred             cccccceEEEeEeecCCCe----EEEEEEEC-------CceEEEEEEeccc-cchhhhHHHHHHHHh----hcCCCeeeE
Confidence            3445789999999999999    99999875       6899999987543 334456666665542    259999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++..... ....+|+||| |+++|+|.++++..          .+++                    ..++.++.|++
T Consensus        97 ~~~~~~~~~-~~~~~~lv~e-~~~~g~L~~~l~~~----------~~~~--------------------~~~~~i~~~i~  144 (337)
T 3mdy_A           97 IAADIKGTG-SWTQLYLITD-YHENGSLYDYLKST----------TLDA--------------------KSMLKLAYSSV  144 (337)
T ss_dssp             EEEEEESCG-GGCEEEEEEC-CCTTCBHHHHHHHC----------CBCH--------------------HHHHHHHHHHH
T ss_pred             EEEEccCCC-CCCceEEEEe-ccCCCcHHHHhhcc----------CCCH--------------------HHHHHHHHHHH
Confidence            999983310 1278999999 99999999999764          3444                    45788999999


Q ss_pred             HHHHHHHHC--------CCcccCCCCCcEEEcCCCCeEEEeeecccccccC-------------CCCCCCCcccccCCCC
Q 005958          242 IGVNYLHSH--------GLAHTELRLENVHISPVDRHIKVGILGNAADFYE-------------DGPNNSSPDSNMDRRQ  300 (667)
Q Consensus       242 ~aL~yLHs~--------gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-------------~~~~Y~APE~l~~~~~  300 (667)
                      .||.|||++        ||+||||||+|||++. ++.+||+|||+|..+..             +.+.|+|||++.+.. 
T Consensus       145 ~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-  222 (337)
T 3mdy_A          145 SGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKK-NGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESL-  222 (337)
T ss_dssp             HHHHHHHSCBCSTTCBCCEECSCCCGGGEEECT-TSCEEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCC-
T ss_pred             HHHHHHHHhhhhhccCCCEEecccchHHEEECC-CCCEEEEeCCCceeeccccccccCCCCCCccCcceeChhhccccc-
Confidence            999999999        9999999999999998 89999999999975432             236799999665443 


Q ss_pred             CCc------hhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhc---cCCChhHHHHHHHHHhccCCCCCCCCcccccCCCH
Q 005958          301 MMI------AFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLT---KGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWG  371 (667)
Q Consensus       301 ys~------ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~---~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~  371 (667)
                      +..      ++|||||||++|||++|..||.........+..   ............   .................+++
T Consensus       223 ~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  299 (337)
T 3mdy_A          223 NRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIV---CIKKLRPSFPNRWSSDECLR  299 (337)
T ss_dssp             CTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHH---TTSCCCCCCCGGGGGSHHHH
T ss_pred             CCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhcCCCCchhhhHHHH---hhhccCccccccchhhHHHH
Confidence            333      499999999999999994443211110000100   111111121211   11111100000111234567


Q ss_pred             HHHHHHHHhhhcCcCCCCCHHHHHcC
Q 005958          372 AGWNLLSLLLATKPSKRISCLDALRH  397 (667)
Q Consensus       372 e~~dLI~~~L~~DP~kRpSa~elL~H  397 (667)
                      ++.+||.+||+.||++|||+.|+++|
T Consensus       300 ~l~~li~~~l~~dP~~Rps~~ell~~  325 (337)
T 3mdy_A          300 QMGKLMTECWAHNPASRLTALRVKKT  325 (337)
T ss_dssp             HHHHHHHHHSCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHHhhhhChhhCCCHHHHHHH
Confidence            89999999999999999999999975

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.2e-39  Score=346.88  Aligned_cols=254  Identities=15%  Similarity=0.100  Sum_probs=192.2

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCC---CCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPL---HNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~---tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ..++|++.+.||+|+||    .||+|++..+....   .++.||||++...   +.+.+|++++++++      ||||++
T Consensus        40 ~~~~y~~~~~lg~G~~g----~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~---~~~~~E~~~l~~l~------h~niv~  106 (352)
T 2jii_A           40 SGRQWKLKSFQTRDNQG----ILYEAAPTSTLTCDSGPQKQKFSLKLDAKD---GRLFNEQNFFQRAA------KPLQVN  106 (352)
T ss_dssp             TSCEEEEEEEEEEETTE----EEEEEEECC-----------CEEEEEEETT---STHHHHHHHHHHHC------CHHHHH
T ss_pred             cCCeEEEEEEecCCCCe----EEEEEeecCCccccccccCceEEEEEeccc---chHHHHHHHHHHhc------ccchhh
Confidence            35899999999999999    99999998621100   2789999998754   45778999999995      998887


Q ss_pred             ---------------EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCC
Q 005958          161 ---------------VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPA  225 (667)
Q Consensus       161 ---------------l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~  225 (667)
                                     +++++..    ..+..|+||| |+ +|+|.+++....       ...+++               
T Consensus       107 ~~~~~~~~~~~~i~~~~~~~~~----~~~~~~lv~e-~~-~~~L~~~l~~~~-------~~~l~~---------------  158 (352)
T 2jii_A          107 KWKKLYSTPLLAIPTCMGFGVH----QDKYRFLVLP-SL-GRSLQSALDVSP-------KHVLSE---------------  158 (352)
T ss_dssp             HHHHHTTCTTCSCCCCCEEEEE----TTTEEEEEEE-CC-CEEHHHHHHHSG-------GGCCCH---------------
T ss_pred             hhhhhccCCccCccchhhcccc----CCcEEEEEec-CC-CcCHHHHHHhCC-------cCCCCH---------------
Confidence                           5666651    3689999999 99 779999998741       114554               


Q ss_pred             ccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCC--eEEEeeeccccccc----------------CCCC
Q 005958          226 ASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDR--HIKVGILGNAADFY----------------EDGP  287 (667)
Q Consensus       226 ~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~--~vKL~DFGlA~~~~----------------~~~~  287 (667)
                           ..++.++.||+.||.|||++||+||||||+|||++. ++  .+||+|||+++.+.                .+.+
T Consensus       159 -----~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIl~~~-~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~  232 (352)
T 2jii_A          159 -----RSVLQVACRLLDALEFLHENEYVHGNVTAENIFVDP-EDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDL  232 (352)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHTTCBCSCCCGGGEEEET-TEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCT
T ss_pred             -----HHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEEcC-CCCceEEEecCcceeeccCCCccccccccccccccCCc
Confidence                 457889999999999999999999999999999998 66  89999999997543                2336


Q ss_pred             CCCCcccccCCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCccccc
Q 005958          288 NNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILD  367 (667)
Q Consensus       288 ~Y~APE~l~~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  367 (667)
                      .|+|||++. ...++.++|||||||++|||++|+.||....          .....+............. .........
T Consensus       233 ~y~aPE~~~-~~~~~~~~Di~slG~il~el~~g~~pf~~~~----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  300 (352)
T 2jii_A          233 EFISMDLHK-GCGPSRRSDLQSLGYCMLKWLYGFLPWTNCL----------PNTEDIMKQKQKFVDKPGP-FVGPCGHWI  300 (352)
T ss_dssp             TTCCHHHHT-TCCCCHHHHHHHHHHHHHHHHHSCCTTGGGT----------TCHHHHHHHHHHHHHSCCC-EECTTSCEE
T ss_pred             cccCHHHHc-cCCCCchhhHHHHHHHHHHHHhCCCCcccCC----------cCHHHHHHHHHhccCChhh-hhhhccccC
Confidence            899999554 4569999999999999999999999996321          1122222222222222111 111112234


Q ss_pred             CCCHHHHHHHHHhhhcCcCCCCCHHHHHc
Q 005958          368 RNWGAGWNLLSLLLATKPSKRISCLDALR  396 (667)
Q Consensus       368 ~~s~e~~dLI~~~L~~DP~kRpSa~elL~  396 (667)
                      .+++++.+||.+||+.||++|||++++++
T Consensus       301 ~~~~~l~~li~~~l~~dp~~Rps~~~l~~  329 (352)
T 2jii_A          301 RPSETLQKYLKVVMALTYEEKPPYAMLRN  329 (352)
T ss_dssp             CCCHHHHHHHHHHHTCCTTCCCCHHHHHH
T ss_pred             CCcHHHHHHHHHHHhCChhhCCCHHHHHH
Confidence            56899999999999999999999999875

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=3.5e-39  Score=335.50  Aligned_cols=245  Identities=15%  Similarity=0.146  Sum_probs=195.5

Q ss_pred             ccccccCCeEEEe-EeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCC
Q 005958           80 VIRFNMGDFKILD-RVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMY  154 (667)
Q Consensus        80 ~~~~~~~~y~i~~-~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~  154 (667)
                      ...+..++|++.+ .||+|+||    .||+|.+...   .+++.||||++....    ..+.+.+|+.+++.++      
T Consensus        10 ~~~~~~~~y~~~~~~lg~G~~g----~Vy~~~~~~~---~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~------   76 (291)
T 1xbb_A           10 EVYLDRKLLTLEDKELGSGNFG----TVKKGYYQMK---KVVKTVAVKILKNEANDPALKDELLAEANVMQQLD------   76 (291)
T ss_dssp             -CBCCGGGEEEEEEEEEECSSE----EEEEEEEECS---SSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCC------
T ss_pred             eeeecchhhhhccCccccccCe----eeEeeeecCC---CceeeEEEEeecccccCHHHHHHHHHHHHHHHhCC------
Confidence            3445668899998 99999999    9999976432   168999999997532    2456789999999994      


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      ||||+++++++.      .+..++||| |+++|+|.+++...+         .+++                    ..+.
T Consensus        77 h~~i~~~~~~~~------~~~~~lv~e-~~~~~~L~~~l~~~~---------~~~~--------------------~~~~  120 (291)
T 1xbb_A           77 NPYIVRMIGICE------AESWMLVME-MAELGPLNKYLQQNR---------HVKD--------------------KNII  120 (291)
T ss_dssp             CTTBCCEEEEEE------SSSEEEEEE-CCTTEEHHHHHHHCT---------TCCH--------------------HHHH
T ss_pred             CCCEEEEEEEEC------CCCcEEEEE-eCCCCCHHHHHHhCc---------CCCH--------------------HHHH
Confidence            999999999985      356899999 999999999998754         3554                    4578


Q ss_pred             HHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC------------CCCCCcccccCCCCCC
Q 005958          235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG------------PNNSSPDSNMDRRQMM  302 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~------------~~Y~APE~l~~~~~ys  302 (667)
                      .++.||+.||.|||++||+||||||+|||++. ++.+||+|||++.......            +.|+|||.+. ...++
T Consensus       121 ~i~~qi~~~l~~LH~~~i~H~dikp~Nil~~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~  198 (291)
T 1xbb_A          121 ELVHQVSMGMKYLEESNFVHRDLAARNVLLVT-QHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECIN-YYKFS  198 (291)
T ss_dssp             HHHHHHHHHHHHHHHTTEECSCCSGGGEEEEE-TTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHH-HCEEE
T ss_pred             HHHHHHHHHHHHHHhCCeEcCCCCcceEEEeC-CCcEEEccCCcceeeccCCCcccccccCCCCceeeChHHhc-cCCCC
Confidence            89999999999999999999999999999998 8999999999998664332            4599999654 44588


Q ss_pred             chhhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhh
Q 005958          303 IAFDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLL  381 (667)
Q Consensus       303 ~ksDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L  381 (667)
                      .++|||||||++|+|++ |+.||..            .........+..   ..      .......+++++.+||.+||
T Consensus       199 ~~~Di~slG~il~~l~~~g~~p~~~------------~~~~~~~~~~~~---~~------~~~~~~~~~~~l~~li~~~l  257 (291)
T 1xbb_A          199 SKSDVWSFGVLMWEAFSYGQKPYRG------------MKGSEVTAMLEK---GE------RMGCPAGCPREMYDLMNLCW  257 (291)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCSSTT------------CCHHHHHHHHHT---TC------CCCCCTTCCHHHHHHHHHHT
T ss_pred             hhhhHHHHHHHHHHHHhcCCCCCCC------------CCHHHHHHHHHc---CC------CCCCCCCCCHHHHHHHHHHc
Confidence            99999999999999999 9999852            222233232221   11      11234567899999999999


Q ss_pred             hcCcCCCCCHHHHHc
Q 005958          382 ATKPSKRISCLDALR  396 (667)
Q Consensus       382 ~~DP~kRpSa~elL~  396 (667)
                      +.||++|||+.++++
T Consensus       258 ~~dp~~Rps~~~l~~  272 (291)
T 1xbb_A          258 TYDVENRPGFAAVEL  272 (291)
T ss_dssp             CSSTTTSCCHHHHHH
T ss_pred             CCChhhCcCHHHHHH
Confidence            999999999999875

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=3.5e-39  Score=341.50  Aligned_cols=265  Identities=19%  Similarity=0.223  Sum_probs=198.9

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      .+..++|++++.||+|+||    .||+|+.... +..+++.||||++...  ...+.+.+|++++++++      ||||+
T Consensus        37 ~~~~~~y~~~~~lg~G~~g----~V~~~~~~~~-~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~------h~~iv  105 (326)
T 2w1i_A           37 QFEERHLKFLQQLGKGNFG----SVEMCRYDPL-QDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQ------HDNIV  105 (326)
T ss_dssp             CCCGGGEEEEEEEECCSSE----EEEEEEECTT-SSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCC------CTTBC
T ss_pred             ccCHHHceeeeeeccCCCe----EEEEEEeccc-cCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCC------CCCee
Confidence            4566889999999999999    9999995320 1127899999999763  23456789999999994      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++...   ....+++||| |+++|+|.+++....        ..+++                    ..+..++.|
T Consensus       106 ~~~~~~~~~---~~~~~~lv~e-~~~~~~L~~~l~~~~--------~~~~~--------------------~~~~~i~~q  153 (326)
T 2w1i_A          106 KYKGVCYSA---GRRNLKLIME-YLPYGSLRDYLQKHK--------ERIDH--------------------IKLLQYTSQ  153 (326)
T ss_dssp             CEEEEECC-------CCEEEEC-CCTTCBHHHHHHHST--------TSSCH--------------------HHHHHHHHH
T ss_pred             eEEEEEEec---CCCceEEEEE-CCCCCCHHHHHHhcc--------cCCCH--------------------HHHHHHHHH
Confidence            999998733   3457899999 999999999998753        13444                    457789999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC------------CCCCCcccccCCCCCCchhhH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG------------PNNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~------------~~Y~APE~l~~~~~ys~ksDI  307 (667)
                      |+.||.|||++||+||||||+|||++. ++.+||+|||++.......            ..|+|||.+. ...++.++||
T Consensus       154 i~~aL~~LH~~~ivH~dikp~NIli~~-~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di  231 (326)
T 2w1i_A          154 ICKGMEYLGTKRYIHRDLATRNILVEN-ENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLT-ESKFSVASDV  231 (326)
T ss_dssp             HHHHHHHHHHTTEECSCCCGGGEEEEE-TTEEEECCCTTCEECCSSCSEEECSSCCSCCGGGCCHHHHH-HCEEEHHHHH
T ss_pred             HHHHHHHHHhCCEeccCCCcceEEEcC-CCcEEEecCcchhhccccccccccccCCCCceeEECchhhc-CCCCCchhhH
Confidence            999999999999999999999999998 8999999999998664332            3499999654 4458999999


Q ss_pred             HHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          308 RCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       308 WSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      |||||++|||++|..||......+................+...+....     ..+....+++++.+||.+||+.||++
T Consensus       232 ~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~li~~cl~~dP~~  306 (326)
T 2w1i_A          232 WSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNG-----RLPRPDGCPDEIYMIMTECWNNNVNQ  306 (326)
T ss_dssp             HHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTC-----CCCCCTTCCHHHHHHHHHHSCSSGGG
T ss_pred             HHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHHHHhhcCC-----CCCCCCcccHHHHHHHHHHcCCChhh
Confidence            9999999999999998863322111111111111111111222221111     12334567899999999999999999


Q ss_pred             CCCHHHHHc
Q 005958          388 RISCLDALR  396 (667)
Q Consensus       388 RpSa~elL~  396 (667)
                      |||+.|+++
T Consensus       307 Rps~~el~~  315 (326)
T 2w1i_A          307 RPSFRDLAL  315 (326)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999985

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=3.8e-39  Score=357.80  Aligned_cols=253  Identities=15%  Similarity=0.170  Sum_probs=200.4

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      ..+.+..++|++.+.||+|+||    .||+|.+..      +..||||+++... ..+.+.+|+++|++++      |||
T Consensus       177 ~~~~i~~~~~~~~~~lG~G~fg----~Vy~~~~~~------~~~vavK~~~~~~~~~~~~~~E~~~l~~l~------hp~  240 (452)
T 1fmk_A          177 DAWEIPRESLRLEVKLGQGCFG----EVWMGTWNG------TTRVAIKTLKPGTMSPEAFLQEAQVMKKLR------HEK  240 (452)
T ss_dssp             TCSBCCGGGEEEEEEEEECSSC----EEEEEEETT------TEEEEEEECCTTSSCHHHHHHHHHHHHHCC------CTT
T ss_pred             cccccChhHceeeeeecCCCCe----EEEEEEECC------CceEEEEEeccCCCCHHHHHHHHHHHHhCC------CCC
Confidence            3456677899999999999999    999999874      5779999998633 3456899999999995      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     + +.+||||| |+++|+|.+++....       ...+++                    ..+..++
T Consensus       241 iv~~~~~~~-----~-~~~~iv~e-~~~~gsL~~~l~~~~-------~~~~~~--------------------~~~~~i~  286 (452)
T 1fmk_A          241 LVQLYAVVS-----E-EPIYIVTE-YMSKGSLLDFLKGET-------GKYLRL--------------------PQLVDMA  286 (452)
T ss_dssp             BCCEEEEEC-----S-SSCEEEEC-CCTTCBHHHHHSHHH-------HTTCCH--------------------HHHHHHH
T ss_pred             EeeEEEEEc-----C-CceEEEeh-hhcCCCHHHHHHhcC-------CCCCCH--------------------HHHHHHH
Confidence            999999986     3 56899999 999999999997531       012443                    4578899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC----------CCCCCcccccCCCCCCchhhH
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG----------PNNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~----------~~Y~APE~l~~~~~ys~ksDI  307 (667)
                      .||+.||+|||++||+||||||+|||++. ++.+||+|||+++......          ..|+|||++. ...|+.++||
T Consensus       287 ~qi~~~l~~LH~~~ivHrDlkp~Nill~~-~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~sDv  364 (452)
T 1fmk_A          287 AQIASGMAYVERMNYVHRDLRAANILVGE-NLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAAL-YGRFTIKSDV  364 (452)
T ss_dssp             HHHHHHHHHHHHTTCCCSCCSGGGEEECG-GGCEEECCCCTTC--------------CCGGGSCHHHHH-HCCCCHHHHH
T ss_pred             HHHHHHHHHHHhCCeeCCCCChhhEEECC-CCCEEECCCccceecCCCceecccCCcccccccCHhHHh-cCCCCccccH
Confidence            99999999999999999999999999998 8999999999998654321          4699999655 4569999999


Q ss_pred             HHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          308 RCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       308 WSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      |||||++|||++ |++||.+            ....+....+..   .      ...+....+++++.+||.+||+.||+
T Consensus       365 wslG~~l~el~t~g~~P~~~------------~~~~~~~~~i~~---~------~~~~~~~~~~~~l~~li~~cl~~dP~  423 (452)
T 1fmk_A          365 WSFGILLTELTTKGRVPYPG------------MVNREVLDQVER---G------YRMPCPPECPESLHDLMCQCWRKEPE  423 (452)
T ss_dssp             HHHHHHHHHHHTTTCCSSTT------------CCHHHHHHHHHT---T------CCCCCCTTSCHHHHHHHHHHTCSSGG
T ss_pred             HhHHHHHHHHHhCCCCCCCC------------CCHHHHHHHHHc---C------CCCCCCCCCCHHHHHHHHHHccCChh
Confidence            999999999999 9999852            222222222221   1      11233456789999999999999999


Q ss_pred             CCCCHHHHHc--CCCCCCCC
Q 005958          387 KRISCLDALR--HPFLCGPR  404 (667)
Q Consensus       387 kRpSa~elL~--HPwf~~~~  404 (667)
                      +|||++++++  +.++....
T Consensus       424 ~Rpt~~~l~~~L~~~~~~~~  443 (452)
T 1fmk_A          424 ERPTFEYLQAFLEDYFTSTE  443 (452)
T ss_dssp             GSCCHHHHHHHHHTTTSCSC
T ss_pred             hCcCHHHHHHHHHHHhccCC
Confidence            9999999987  36666544

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=7.2e-39  Score=332.90  Aligned_cols=243  Identities=15%  Similarity=0.147  Sum_probs=189.6

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      -.|++.+.||+|+||    +||+|.+....  .++..||+|++....   ..+.+.+|+.++++++      ||||++++
T Consensus        21 ~~~~~~~~lg~G~~g----~Vy~~~~~~~~--~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~------h~~iv~~~   88 (298)
T 3pls_A           21 VVTHSDRVIGKGHFG----VVYHGEYIDQA--QNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLN------HPNVLALI   88 (298)
T ss_dssp             EEEEEEEEEEEETTE----EEEEEEEECSS--SCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCC------CTTBCCCC
T ss_pred             eEEccCceeccCCCc----eEEEEEEecCC--CceeeeeeeeccccccHHHHHHHHHHHHHHHhCC------CCCeeeEE
Confidence            457788999999999    99999987521  134489999987532   3355689999999994      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++..    .++..++||| |+.+|+|.+++....        ..+++                    ..+..++.||+.
T Consensus        89 ~~~~~----~~~~~~~v~e-~~~~~~L~~~~~~~~--------~~~~~--------------------~~~~~i~~qi~~  135 (298)
T 3pls_A           89 GIMLP----PEGLPHVLLP-YMCHGDLLQFIRSPQ--------RNPTV--------------------KDLISFGLQVAR  135 (298)
T ss_dssp             EEECC----SSSCCEEEEC-CCTTCBHHHHHHCTT--------CCCBH--------------------HHHHHHHHHHHH
T ss_pred             EEEec----CCCCcEEEEe-cccCCCHHHHHhccc--------cCCCH--------------------HHHHHHHHHHHH
Confidence            99972    2344599999 998889999998633        13333                    457889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-------------CCCCCCcccccCCCCCCchhhHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-------------GPNNSSPDSNMDRRQMMIAFDMRC  309 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-------------~~~Y~APE~l~~~~~ys~ksDIWS  309 (667)
                      ||.|||++||+||||||+|||++. ++.+||+|||++......             .+.|+|||.+ ....++.++||||
T Consensus       136 ~l~~LH~~~i~H~dikp~Nili~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~s  213 (298)
T 3pls_A          136 GMEYLAEQKFVHRDLAARNCMLDE-SFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESL-QTYRFTTKSDVWS  213 (298)
T ss_dssp             HHHHHHHTTCCCSCCSGGGEEECT-TCCEEECCTTSSCTTTTGGGGCSCCSSCTTCGGGGSCHHHH-TTCCCCHHHHHHH
T ss_pred             HHHHHHhCCcccCCCCcceEEEcC-CCcEEeCcCCCcccccCCcccccccCcCCCCCccccChhhh-ccCCCChhhchhh
Confidence            999999999999999999999998 889999999999754321             1569999955 4556899999999


Q ss_pred             HHHHHHHHHhCC-CCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCC
Q 005958          310 VGFMMAKMVLRE-LMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  388 (667)
Q Consensus       310 LGviLyemltG~-~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kR  388 (667)
                      |||++|+|++|. +||.            +.....+...+....         ..+....+++++.+||.+||+.||.+|
T Consensus       214 lG~il~~l~~g~~~~~~------------~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~li~~~l~~~p~~R  272 (298)
T 3pls_A          214 FGVLLWELLTRGAPPYR------------HIDPFDLTHFLAQGR---------RLPQPEYCPDSLYQVMQQCWEADPAVR  272 (298)
T ss_dssp             HHHHHHHHHHTSCCTTT------------TSCGGGHHHHHHTTC---------CCCCCTTCCHHHHHHHHHHTCSSGGGS
T ss_pred             HHHHHHHHhhCCCCCCc------------cCCHHHHHHHhhcCC---------CCCCCccchHHHHHHHHHHccCChhhC
Confidence            999999999954 4443            223333333332211         122344678899999999999999999


Q ss_pred             CCHHHHHc
Q 005958          389 ISCLDALR  396 (667)
Q Consensus       389 pSa~elL~  396 (667)
                      ||+.++++
T Consensus       273 ps~~~ll~  280 (298)
T 3pls_A          273 PTFRVLVG  280 (298)
T ss_dssp             CCHHHHHH
T ss_pred             cCHHHHHH
Confidence            99999886

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=2e-39  Score=346.50  Aligned_cols=258  Identities=12%  Similarity=0.093  Sum_probs=185.2

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhH-------------HHHHHHHHHHHHHh
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQ-------------RRGRRAIEVLKKLV  148 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~-------------~~~~rEi~iL~~L~  148 (667)
                      .+..++|++.+.||+|+||    .||+|.+...+  .++..||||++......             ..+.+|+.+++.+ 
T Consensus        33 ~~~~~~y~~~~~lg~G~~g----~Vy~~~~~~~~--~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l-  105 (345)
T 2v62_A           33 DMEGNQWVLGKKIGSGGFG----LIYLAFPTNKP--EKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQL-  105 (345)
T ss_dssp             CTTSCEEEEEEEC----------CEEEEEESSSC--GGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTC-
T ss_pred             cccCceEEEEeeEeecCCe----EEEEEEecCCC--CccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccc-
Confidence            3455789999999999999    99999997521  25788999998753211             1234566666666 


Q ss_pred             hccCCCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccc
Q 005958          149 RRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASR  228 (667)
Q Consensus       149 ~~~~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~  228 (667)
                           .||||+++++++.... .+...+|+||| |+ +++|.+++...+         .+++                  
T Consensus       106 -----~h~ni~~~~~~~~~~~-~~~~~~~lv~e-~~-~~~L~~~l~~~~---------~~~~------------------  150 (345)
T 2v62_A          106 -----DYLGIPLFYGSGLTEF-KGRSYRFMVME-RL-GIDLQKISGQNG---------TFKK------------------  150 (345)
T ss_dssp             -----SCCCCCCEEEEEEEES-SSCEEEEEEEE-CE-EEEHHHHCBGGG---------BCCH------------------
T ss_pred             -----cccCcceeeccccccc-CCCcEEEEEEe-cc-CCCHHHHHHhcC---------CCCH------------------
Confidence                 5999999999998321 13678999999 89 779999987643         4554                  


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCC--eEEEeeeccccccc----------------CCCCCCC
Q 005958          229 QLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDR--HIKVGILGNAADFY----------------EDGPNNS  290 (667)
Q Consensus       229 ~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~--~vKL~DFGlA~~~~----------------~~~~~Y~  290 (667)
                        ..++.++.||+.||+|||++||+||||||+|||++. ++  .+||+|||+|+.+.                .+.+.|+
T Consensus       151 --~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~-~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~  227 (345)
T 2v62_A          151 --STVLQLGIRMLDVLEYIHENEYVHGDIKAANLLLGY-KNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFT  227 (345)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEES-SSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTC
T ss_pred             --HHHHHHHHHHHHHHHHHHhCCeeCCCcCHHHEEEcc-CCCCcEEEEeCCCceecccccccccchhccccccCCCcccc
Confidence              457889999999999999999999999999999997 55  99999999997542                2347899


Q ss_pred             CcccccCCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCC
Q 005958          291 SPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNW  370 (667)
Q Consensus       291 APE~l~~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s  370 (667)
                      |||++. ...++.++|||||||++|||++|+.||....          .................+. ..........++
T Consensus       228 aPE~~~-~~~~~~~~Di~slG~il~ell~g~~pf~~~~----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  295 (345)
T 2v62_A          228 SLDAHK-GVALSRRSDVEILGYCMLRWLCGKLPWEQNL----------KDPVAVQTAKTNLLDELPQ-SVLKWAPSGSSC  295 (345)
T ss_dssp             CHHHHH-TCCCCHHHHHHHHHHHHHHHHHSSCTTGGGT----------TCHHHHHHHHHHHHHTTTH-HHHHHSCTTSCC
T ss_pred             CHHHhc-CCCCCchhhHHHHHHHHHHHHhCCCCccccc----------cccHHHHHHHHhhcccccH-HHHhhccccccH
Confidence            999655 4568999999999999999999999995311          1111111111111111000 000000112678


Q ss_pred             HHHHHHHHHhhhcCcCCCCCHHHHHc
Q 005958          371 GAGWNLLSLLLATKPSKRISCLDALR  396 (667)
Q Consensus       371 ~e~~dLI~~~L~~DP~kRpSa~elL~  396 (667)
                      +++++||.+||..||++|||++++++
T Consensus       296 ~~l~~li~~~l~~dp~~Rps~~~l~~  321 (345)
T 2v62_A          296 CEIAQFLVCAHSLAYDEKPNYQALKK  321 (345)
T ss_dssp             HHHHHHHHHHHTCCTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHhhcCcccCCCHHHHHH
Confidence            89999999999999999999999886

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=7.5e-39  Score=333.46  Aligned_cols=244  Identities=14%  Similarity=0.155  Sum_probs=189.4

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ..+|++.+.||+|+||    +||+|.+....  .....||+|.+....   ..+.+.+|+.++++++      ||||+++
T Consensus        24 ~~~y~~~~~lg~G~~g----~Vy~~~~~~~~--~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~------h~~iv~~   91 (298)
T 3f66_A           24 SLIVHFNEVIGRGHFG----CVYHGTLLDND--GKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFS------HPNVLSL   91 (298)
T ss_dssp             GEEEEEEEEEEEETTE----EEEEEEEC-------CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCC------CTTBCCC
T ss_pred             ceehhhcceeeecCCc----eEEEEEEecCC--CceeEEEEEecccCCCHHHHHHHHHHHHHHHhCC------CCCEeee
Confidence            4579999999999999    99999976521  134569999987532   3355789999999994      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.    ...+..++||| |+++|+|.+++....        ..+++                    ..+..++.||+
T Consensus        92 ~~~~~----~~~~~~~~v~e-~~~~~~L~~~l~~~~--------~~~~~--------------------~~~~~i~~ql~  138 (298)
T 3f66_A           92 LGICL----RSEGSPLVVLP-YMKHGDLRNFIRNET--------HNPTV--------------------KDLIGFGLQVA  138 (298)
T ss_dssp             CEEEC----CSSSCCEEEEE-CCTTCBHHHHHHCTT--------CCCCH--------------------HHHHHHHHHHH
T ss_pred             eeEEE----cCCCceEEEEe-CCCCCCHHHHHHhcc--------cCCCH--------------------HHHHHHHHHHH
Confidence            99865    15568899999 999999999997643        13443                    45788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-------------CCCCCcccccCCCCCCchhhHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-------------PNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-------------~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      .||.|||++||+||||||+|||++. ++.+||+|||++.......             +.|+|||.+ ....++.++|||
T Consensus       139 ~~l~~lH~~~i~H~dikp~Nil~~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~  216 (298)
T 3f66_A          139 KGMKYLASKKFVHRDLAARNCMLDE-KFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESL-QTQKFTTKSDVW  216 (298)
T ss_dssp             HHHHHHHHTTCCCSCCSGGGEEECT-TCCEEECSCGGGCCCSCGGGCBC-----CCBCGGGSCHHHH-HHCCCCHHHHHH
T ss_pred             HHHHHHHhCCccCCCCchheEEECC-CCCEEECcccccccccccchhccccccCCCCCccccChHHh-cCCCCChHHHHH
Confidence            9999999999999999999999998 8999999999997553321             359999955 445689999999


Q ss_pred             HHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          309 CVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       309 SLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      ||||++|+|++ |.+||..            .........+..   ..      .......+++++.+||.+||+.||++
T Consensus       217 slG~il~~l~~~~~~~~~~------------~~~~~~~~~~~~---~~------~~~~~~~~~~~l~~li~~~l~~~p~~  275 (298)
T 3f66_A          217 SFGVLLWELMTRGAPPYPD------------VNTFDITVYLLQ---GR------RLLQPEYCPDPLYEVMLKCWHPKAEM  275 (298)
T ss_dssp             HHHHHHHHHHTTSCCSSTT------------SCTTTHHHHHHT---TC------CCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             HHHHHHHHHHhCCCCCCcc------------CCHHHHHHHHhc---CC------CCCCCccCCHHHHHHHHHHcCCChhh
Confidence            99999999999 6667642            122222222211   11      11223456789999999999999999


Q ss_pred             CCCHHHHHc
Q 005958          388 RISCLDALR  396 (667)
Q Consensus       388 RpSa~elL~  396 (667)
                      |||+.|+++
T Consensus       276 Rps~~ell~  284 (298)
T 3f66_A          276 RPSFSELVS  284 (298)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999986

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=6.9e-39  Score=331.88  Aligned_cols=248  Identities=17%  Similarity=0.137  Sum_probs=188.8

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-----hhHHHHHHHHHHHHHHhhccCCCC
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-----QAQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-----~~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      ..+..++|++.+.||+|+||    +||+|++....  ..+..||||+++..     ...+.+.+|+.+++.++      |
T Consensus        13 ~~~~~~~y~~~~~lg~G~~g----~Vy~~~~~~~~--~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~------h   80 (291)
T 1u46_A           13 CLIGEKDLRLLEKLGDGSFG----VVRRGEWDAPS--GKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLD------H   80 (291)
T ss_dssp             EECCGGGEEEEEECC----C----CCEEEEEECTT--SCEEEEEEEC--------CHHHHHHHHHHHHHHHCC------C
T ss_pred             cccchhHeeeeeeecCCCce----eEEEEEeccCC--CceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCC------C
Confidence            34556899999999999999    99999976421  02347999998753     23456789999999994      9


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      |||+++++++.     .. ..++||| |+.+|+|.+++....        ..+++                    ..+..
T Consensus        81 ~~i~~~~~~~~-----~~-~~~~v~e-~~~~~~L~~~l~~~~--------~~~~~--------------------~~~~~  125 (291)
T 1u46_A           81 RNLIRLYGVVL-----TP-PMKMVTE-LAPLGSLLDRLRKHQ--------GHFLL--------------------GTLSR  125 (291)
T ss_dssp             TTBCCEEEEEC-----SS-SCEEEEE-CCTTCBHHHHHHHHG--------GGSCH--------------------HHHHH
T ss_pred             CCcccEEEEEc-----cC-CceeeEe-cccCCCHHHHHHhcc--------CCcCH--------------------HHHHH
Confidence            99999999997     33 3899999 999999999998642        13444                    45788


Q ss_pred             HHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC------------CCCCCcccccCCCCCCc
Q 005958          236 LMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG------------PNNSSPDSNMDRRQMMI  303 (667)
Q Consensus       236 i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~------------~~Y~APE~l~~~~~ys~  303 (667)
                      ++.||+.||.|||++||+||||||+|||++. ++.+||+|||++.......            ..|+|||++. ...++.
T Consensus       126 ~~~~i~~~l~~lH~~~i~H~dikp~Nili~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~  203 (291)
T 1u46_A          126 YAVQVAEGMGYLESKRFIHRDLAARNLLLAT-RDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLK-TRTFSH  203 (291)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCCGGGEEEEE-TTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHH-HCEEEH
T ss_pred             HHHHHHHHHHHHHhCCcccCCCchheEEEcC-CCCEEEccccccccccccccchhhhccCCCCceeeCchhhc-CCCCCc
Confidence            9999999999999999999999999999998 8999999999998764332            3599999654 445899


Q ss_pred             hhhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhh
Q 005958          304 AFDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLA  382 (667)
Q Consensus       304 ksDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~  382 (667)
                      ++|||||||++|+|++ |++||..            .........   +.....     ..+....+++++.+||.+||.
T Consensus       204 ~~Di~slG~il~~l~~~g~~p~~~------------~~~~~~~~~---~~~~~~-----~~~~~~~~~~~l~~li~~~l~  263 (291)
T 1u46_A          204 ASDTWMFGVTLWEMFTYGQEPWIG------------LNGSQILHK---IDKEGE-----RLPRPEDCPQDIYNVMVQCWA  263 (291)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCTTTT------------CCHHHHHHH---HHTSCC-----CCCCCTTCCHHHHHHHHHHTC
T ss_pred             hhhHHHHHHHHHHHHhCCCCCccc------------CCHHHHHHH---HHccCC-----CCCCCcCcCHHHHHHHHHHcc
Confidence            9999999999999999 9999852            222222222   211111     123345678999999999999


Q ss_pred             cCcCCCCCHHHHHcC
Q 005958          383 TKPSKRISCLDALRH  397 (667)
Q Consensus       383 ~DP~kRpSa~elL~H  397 (667)
                      .||++|||+.+++++
T Consensus       264 ~~p~~Rps~~~l~~~  278 (291)
T 1u46_A          264 HKPEDRPTFVALRDF  278 (291)
T ss_dssp             SSGGGSCCHHHHHHH
T ss_pred             CCcccCcCHHHHHHH
Confidence            999999999999873

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=4.1e-38  Score=362.62  Aligned_cols=245  Identities=16%  Similarity=0.175  Sum_probs=196.0

Q ss_pred             cccccCCeEEEe-EeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCC
Q 005958           81 IRFNMGDFKILD-RVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        81 ~~~~~~~y~i~~-~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      ..+..+++.+.+ .||+|+||    .||+|.++...   ++..||||+++..   ...+.+.+|+++|++++      ||
T Consensus       330 ~~~~~~~~~~~~~~LG~G~fG----~Vy~~~~~~~~---~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~------hp  396 (613)
T 2ozo_A          330 LFLKRDNLLIADIELGCGNFG----SVRQGVYRMRK---KQIDVAIKVLKQGTEKADTEEMMREAQIMHQLD------NP  396 (613)
T ss_dssp             SBCCTTSEEEEEEEEEECSSS----EEEEEEEECSS---CEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCC------CT
T ss_pred             eeccccceeEcCcEEecCCCc----EEEEEEEecCC---CcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCC------CC
Confidence            345557788777 89999999    99999887421   4678999999763   24467899999999994      99


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      |||++++++.     . +.++|||| |+++|+|.+++....        ..+++                    ..+..+
T Consensus       397 niv~l~~~~~-----~-~~~~lv~E-~~~~g~L~~~l~~~~--------~~l~~--------------------~~~~~i  441 (613)
T 2ozo_A          397 YIVRLIGVCQ-----A-EALMLVME-MAGGGPLHKFLVGKR--------EEIPV--------------------SNVAEL  441 (613)
T ss_dssp             TBCCEEEEEE-----S-SSEEEEEE-CCTTCBHHHHHTTCT--------TTSCH--------------------HHHHHH
T ss_pred             CEeeEEEEec-----c-CCeEEEEE-eCCCCcHHHHHhhcc--------CCCCH--------------------HHHHHH
Confidence            9999999997     4 45999999 999999999997542        13444                    457889


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC------------CCCCCcccccCCCCCCch
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG------------PNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~------------~~Y~APE~l~~~~~ys~k  304 (667)
                      +.||+.||+|||++||+||||||+|||++. ++.+||+|||+|+......            +.|+|||++. ...|+.+
T Consensus       442 ~~qi~~~L~~LH~~~iiHrDlkp~NILl~~-~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~y~APE~~~-~~~~~~~  519 (613)
T 2ozo_A          442 LHQVSMGMKYLEEKNFVHRNLAARNVLLVN-RHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECIN-FRKFSSR  519 (613)
T ss_dssp             HHHHHHHHHHHHHTTCCCSCCSGGGEEEEE-TTEEEECCCSTTTTCC--------------CCTTSCHHHHH-HCCCCHH
T ss_pred             HHHHHHHHHHHHHCCEEcCcCCHHHEEEcC-CCcEEEeeccCcccccCCCceeeeccCCCCccceeCHhhhc-CCCCCcH
Confidence            999999999999999999999999999998 8999999999998654321            4699999654 4569999


Q ss_pred             hhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhc
Q 005958          305 FDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLAT  383 (667)
Q Consensus       305 sDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~  383 (667)
                      +|||||||++|||++ |+.||..            ....++...+..   ..      ..+....+++++.+||.+||+.
T Consensus       520 sDvwSlGv~l~ellt~G~~Pf~~------------~~~~~~~~~i~~---~~------~~~~p~~~~~~l~~li~~cl~~  578 (613)
T 2ozo_A          520 SDVWSYGVTMWEALSYGQKPYKK------------MKGPEVMAFIEQ---GK------RMECPPECPPELYALMSDCWIY  578 (613)
T ss_dssp             HHHHHHHHHHHHHHTTSCCTTTT------------CCSHHHHHHHHT---TC------CCCCCTTCCHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCC------------CCHHHHHHHHHc---CC------CCCCCCcCCHHHHHHHHHHcCC
Confidence            999999999999998 9999852            222223333221   11      1233456889999999999999


Q ss_pred             CcCCCCCHHHHHc
Q 005958          384 KPSKRISCLDALR  396 (667)
Q Consensus       384 DP~kRpSa~elL~  396 (667)
                      ||++||++.++++
T Consensus       579 dP~~RPs~~~l~~  591 (613)
T 2ozo_A          579 KWEDRPDFLTVEQ  591 (613)
T ss_dssp             STTTSCCHHHHHH
T ss_pred             ChhHCcCHHHHHH
Confidence            9999999999864

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=8e-39  Score=344.28  Aligned_cols=254  Identities=13%  Similarity=0.064  Sum_probs=191.7

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      ....+..++|++.+.||+|+||    +||+|.+....+..+++.||||++... ....+.+|+++++.++.   ..|+||
T Consensus        58 ~~~~~~~~~y~~~~~lG~G~~g----~Vy~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~e~~~~~~l~~---~~~~~i  129 (365)
T 3e7e_A           58 TEFQLGSKLVYVHHLLGEGAFA----QVYEATQGDLNDAKNKQKFVLKVQKPA-NPWEFYIGTQLMERLKP---SMQHMF  129 (365)
T ss_dssp             CEEECSSSEEEEEEEEEECSSE----EEEEEEC-------CCCCEEEEEESSC-CHHHHHHHHHHHHHSCG---GGGGGB
T ss_pred             eeEEECCEEEEEEEEeeccCCE----EEEEEEecCCcccccCcEEEEEEeCCC-ChhHHHHHHHHHHHhhh---hhhhhh
Confidence            4455667889999999999999    999996433222337999999999765 34567889999998852   249999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      +++++++.     ..+..||||| |+++|+|.+++...+...    ...+++                    ..++.|+.
T Consensus       130 v~~~~~~~-----~~~~~~lv~e-~~~~g~L~~~l~~~~~~~----~~~l~~--------------------~~~~~i~~  179 (365)
T 3e7e_A          130 MKFYSAHL-----FQNGSVLVGE-LYSYGTLLNAINLYKNTP----EKVMPQ--------------------GLVISFAM  179 (365)
T ss_dssp             CCEEEEEE-----CSSCEEEEEC-CCCSCBHHHHHHHHHTST----TCSCCH--------------------HHHHHHHH
T ss_pred             hhhheeee-----cCCCcEEEEe-ccCCCcHHHHHHHhhccc----ccCCCH--------------------HHHHHHHH
Confidence            99999999     7889999999 999999999998632110    013444                    56788999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCC----------CCeEEEeeeccccccc-----------CCCCCCCCcccccC
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPV----------DRHIKVGILGNAADFY-----------EDGPNNSSPDSNMD  297 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~----------~~~vKL~DFGlA~~~~-----------~~~~~Y~APE~l~~  297 (667)
                      ||+.||+|||++||+||||||+|||++..          ++.+||+|||+|+.+.           .+.+.|+|||++.+
T Consensus       180 qi~~~L~~lH~~~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  259 (365)
T 3e7e_A          180 RMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSN  259 (365)
T ss_dssp             HHHHHHHHHHTTTEECCCCSGGGEEECGGGTCC------CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTT
T ss_pred             HHHHHHHHHhhCCeecCCCCHHHEEecccccCccccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcC
Confidence            99999999999999999999999999752          5789999999996543           12478999996554


Q ss_pred             CCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHH
Q 005958          298 RRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLL  377 (667)
Q Consensus       298 ~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI  377 (667)
                       ..|+.++|||||||++|||++|++||........  .                ...       .+.. ...++...+++
T Consensus       260 -~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~--~----------------~~~-------~~~~-~~~~~~~~~~~  312 (365)
T 3e7e_A          260 -KPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGEC--K----------------PEG-------LFRR-LPHLDMWNEFF  312 (365)
T ss_dssp             -CCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTEE--E----------------ECS-------CCTT-CSSHHHHHHHH
T ss_pred             -CCCCccccHHHHHHHHHHHHhCCCccccCCCCce--e----------------ech-------hccc-cCcHHHHHHHH
Confidence             4599999999999999999999999853211000  0                000       0000 02356788999


Q ss_pred             HHhhhcCcCCCCCHHHHHcC
Q 005958          378 SLLLATKPSKRISCLDALRH  397 (667)
Q Consensus       378 ~~~L~~DP~kRpSa~elL~H  397 (667)
                      ..||+.+|.+|++..+.+.+
T Consensus       313 ~~~l~~~p~~r~~~~~~l~~  332 (365)
T 3e7e_A          313 HVMLNIPDCHHLPSLDLLRQ  332 (365)
T ss_dssp             HHHHCCCCTTCCCCHHHHHH
T ss_pred             HHHcCCCCCCcchHHHHHHH
Confidence            99999999999765554443

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=7.5e-39  Score=347.01  Aligned_cols=244  Identities=14%  Similarity=0.157  Sum_probs=185.0

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ..|++.+.||+|+||    +||+|++....  ..+..||+|.++..   ...+.+.+|+.++++++      ||||++++
T Consensus        89 ~~~~~~~~LG~G~fg----~Vy~~~~~~~~--~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~------hpnIv~~~  156 (373)
T 3c1x_A           89 LIVHFNEVIGRGHFG----CVYHGTLLDND--GKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFS------HPNVLSLL  156 (373)
T ss_dssp             EEEEEEEEEECCSSS----EEEEEEEEETT--TEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCC------CTTBCCCC
T ss_pred             ceeecCcEeeeCCCe----EEEEEEEECCC--CcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCC------CCCcceEE
Confidence            458899999999999    99999986521  12457899998752   23456789999999984      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++..    ..+..++||| |+++|+|.+++.....        .++                    ...+..++.||+.
T Consensus       157 ~~~~~----~~~~~~lv~e-~~~~g~L~~~l~~~~~--------~~~--------------------~~~~~~i~~qi~~  203 (373)
T 3c1x_A          157 GICLR----SEGSPLVVLP-YMKHGDLRNFIRNETH--------NPT--------------------VKDLIGFGLQVAK  203 (373)
T ss_dssp             EEECC----CSSCCEEEEE-CCTTCBHHHHHHCTTC--------CCB--------------------HHHHHHHHHHHHH
T ss_pred             EEEEc----CCCCeEEEEE-CCCCCCHHHHHhhccc--------CCC--------------------HHHHHHHHHHHHH
Confidence            98751    4567899999 9999999999986431        233                    3457889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-------------CCCCCcccccCCCCCCchhhHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-------------PNNSSPDSNMDRRQMMIAFDMRC  309 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-------------~~Y~APE~l~~~~~ys~ksDIWS  309 (667)
                      ||.|||++||+||||||+|||++. ++.+||+|||+++......             +.|+|||++. ...|+.++||||
T Consensus       204 aL~~LH~~~ivHrDlkp~NIll~~-~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~DvwS  281 (373)
T 3c1x_A          204 GMKFLASKKFVHRDLAARNCMLDE-KFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQ-TQKFTTKSDVWS  281 (373)
T ss_dssp             HHHHHHHTTCCCSCCCGGGEEECT-TCCEEECCC---------------------CCGGGSCHHHHH-HCCCCHHHHHHH
T ss_pred             HHHHHHHCCEecCccchheEEECC-CCCEEEeeccccccccccccccccccCCCCCcccccChHHhc-CCCCCcHHHHHH
Confidence            999999999999999999999998 8999999999997553221             3599999654 556899999999


Q ss_pred             HHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCC
Q 005958          310 VGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  388 (667)
Q Consensus       310 LGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kR  388 (667)
                      |||++|||++ |.+||...            ........+..   ..      .......+++++.+||.+||+.||++|
T Consensus       282 lG~il~ellt~~~~p~~~~------------~~~~~~~~~~~---~~------~~~~p~~~~~~l~~li~~cl~~dp~~R  340 (373)
T 3c1x_A          282 FGVLLWELMTRGAPPYPDV------------NTFDITVYLLQ---GR------RLLQPEYCPDPLYEVMLKCWHPKAEMR  340 (373)
T ss_dssp             HHHHHHHHHTTSCCSCTTS------------CSSCHHHHHHT---TC------CCCCCTTCCHHHHHHHHHHTCSSGGGS
T ss_pred             HHHHHHHHHhCcCCCCCCC------------CHHHHHHHHHc---CC------CCCCCCCCCHHHHHHHHHHcCCChhhC
Confidence            9999999999 78887532            11122222211   11      112234578899999999999999999


Q ss_pred             CCHHHHHcC
Q 005958          389 ISCLDALRH  397 (667)
Q Consensus       389 pSa~elL~H  397 (667)
                      ||+.|++++
T Consensus       341 Ps~~ell~~  349 (373)
T 3c1x_A          341 PSFSELVSR  349 (373)
T ss_dssp             CCHHHHHHH
T ss_pred             cCHHHHHHH
Confidence            999999864

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=1e-38  Score=361.96  Aligned_cols=253  Identities=15%  Similarity=0.168  Sum_probs=202.7

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      ..+.+..++|++.+.||+|+||    .||+|.+..      +..||||+++... ..+.+.+|+++|++++      |||
T Consensus       260 ~~~~i~~~~~~~~~~lG~G~fg----~Vy~~~~~~------~~~vavK~~~~~~~~~~~~~~E~~~l~~l~------hpn  323 (535)
T 2h8h_A          260 DAWEIPRESLRLEVKLGQGCFG----EVWMGTWNG------TTRVAIKTLKPGTMSPEAFLQEAQVMKKLR------HEK  323 (535)
T ss_dssp             TCSBCCGGGEEEEEEEEECSSE----EEEEEEETT------TEEEEEEEECTTSSCHHHHHHHHHHHHHCC------CTT
T ss_pred             cceecchhhhhhheecccCCCe----EEEEEEECC------CceEEEEEeCCCCCCHHHHHHHHHHHHhCC------CCC
Confidence            4456677899999999999999    999999974      5779999998633 3456899999999995      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     + +.+||||| |+.+|+|.+++....       ...+++                    ..+..++
T Consensus       324 iv~~~~~~~-----~-~~~~lv~e-~~~~gsL~~~l~~~~-------~~~l~~--------------------~~~~~i~  369 (535)
T 2h8h_A          324 LVQLYAVVS-----E-EPIYIVTE-YMSKGSLLDFLKGET-------GKYLRL--------------------PQLVDMA  369 (535)
T ss_dssp             BCCEEEEEC-----S-SSCEEEEC-CCTTEEHHHHHSHHH-------HTTCCH--------------------HHHHHHH
T ss_pred             EeeEEEEEe-----e-ccceEeee-hhcCCcHHHHHhhcC-------CCCCCH--------------------HHHHHHH
Confidence            999999986     3 56899999 999999999997531       012443                    4578899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC----------CCCCCCcccccCCCCCCchhhH
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED----------GPNNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~----------~~~Y~APE~l~~~~~ys~ksDI  307 (667)
                      .||+.||+|||++||+||||||+|||++. ++.+||+|||+++.....          ...|+|||++. ...|+.++||
T Consensus       370 ~qi~~~L~~LH~~~ivHrDlkp~NIll~~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~sDv  447 (535)
T 2h8h_A          370 AQIASGMAYVERMNYVHRDLRAANILVGE-NLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAAL-YGRFTIKSDV  447 (535)
T ss_dssp             HHHHHHHHHHHHTTCCCSCCSGGGEEECG-GGCEEECCTTSTTTCCCHHHHTTCSTTSCGGGSCHHHHH-HCCCCHHHHH
T ss_pred             HHHHHHHHHHHhCCeeCCCCCHhhEEEcC-CCcEEEcccccceecCCCceecccCCcCcccccCHHHhc-cCCCCchhhH
Confidence            99999999999999999999999999998 889999999999865421          14699999655 4569999999


Q ss_pred             HHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          308 RCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       308 WSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      |||||++|||++ |+.||.+            ....++...+....         ..+....+++++.+||.+||+.||+
T Consensus       448 wSlGv~l~el~t~g~~P~~~------------~~~~~~~~~i~~~~---------~~~~~~~~~~~l~~li~~cl~~dP~  506 (535)
T 2h8h_A          448 WSFGILLTELTTKGRVPYPG------------MVNREVLDQVERGY---------RMPCPPECPESLHDLMCQCWRKEPE  506 (535)
T ss_dssp             HHHHHHHHHHTTTTCCSSTT------------CCHHHHHHHHHTTC---------CCCCCTTCCHHHHHHHHHHTCSSGG
T ss_pred             HHHHHHHHHHHhCCCCCCCC------------CCHHHHHHHHHcCC---------CCCCCCCCCHHHHHHHHHHcCCChh
Confidence            999999999999 9999852            22222222222111         1233456789999999999999999


Q ss_pred             CCCCHHHHHcC--CCCCCCC
Q 005958          387 KRISCLDALRH--PFLCGPR  404 (667)
Q Consensus       387 kRpSa~elL~H--Pwf~~~~  404 (667)
                      +|||++++++.  .+|....
T Consensus       507 ~RPt~~~l~~~L~~~~~~~~  526 (535)
T 2h8h_A          507 ERPTFEYLQAFLEDYFTSTE  526 (535)
T ss_dssp             GSCCHHHHHHHHHTSSCCCS
T ss_pred             HCcCHHHHHHHHHHHhhccC
Confidence            99999999874  6665543

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=6.3e-38  Score=362.31  Aligned_cols=241  Identities=15%  Similarity=0.159  Sum_probs=192.8

Q ss_pred             ccCCeEEE-eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           84 NMGDFKIL-DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        84 ~~~~y~i~-~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      ....+.+. +.||+|+||    +||+|.+....   +++.||||+++...    ..+.+.+|+++|++++      ||||
T Consensus       366 ~~~~~~l~~~~LG~G~fG----~Vy~~~~~~~~---~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~------hpnI  432 (635)
T 4fl3_A          366 DRKLLTLEDKELGSGNFG----TVKKGYYQMKK---VVKTVAVKILKNEANDPALKDELLAEANVMQQLD------NPYI  432 (635)
T ss_dssp             CGGGEEEEEEEEEECSSE----EEEEEEEECSS---CEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCC------CTTB
T ss_pred             cchhccccCCEeccCCCE----EEEEEEEcCCC---cceEEEEEEeccccCCHHHHHHHHHHHHHHHhCC------CCCE
Confidence            33445554 489999999    99999765321   67899999997632    2467899999999995      9999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      |++++++.     . +.++|||| |+++|+|.+++...+         .+++                    ..++.|+.
T Consensus       433 v~l~~~~~-----~-~~~~lv~E-~~~~g~L~~~l~~~~---------~l~~--------------------~~~~~i~~  476 (635)
T 4fl3_A          433 VRMIGICE-----A-ESWMLVME-MAELGPLNKYLQQNR---------HVKD--------------------KNIIELVH  476 (635)
T ss_dssp             CCEEEEEE-----S-SSEEEEEE-CCTTEEHHHHHHHCT---------TCCH--------------------HHHHHHHH
T ss_pred             eeEEEEEe-----c-CCEEEEEE-ccCCCCHHHHHhhCC---------CCCH--------------------HHHHHHHH
Confidence            99999987     3 34889999 999999999998754         4554                    45778999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC------------CCCCCcccccCCCCCCchhh
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG------------PNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~------------~~Y~APE~l~~~~~ys~ksD  306 (667)
                      ||+.||+|||++||+||||||+|||++. ++.+||+|||+|+.+....            +.|+|||++ ....|+.++|
T Consensus       477 qi~~~L~yLH~~~iiHrDLkp~NILl~~-~~~~kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~APE~~-~~~~~~~~sD  554 (635)
T 4fl3_A          477 QVSMGMKYLEESNFVHRDLAARNVLLVT-QHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECI-NYYKFSSKSD  554 (635)
T ss_dssp             HHHHHHHHHHHTTCCCSCCSGGGEEEEE-TTEEEECCTTHHHHTTC-------------CGGGSCHHHH-HHCCCCHHHH
T ss_pred             HHHHHHHHHHHCCEeCCCCChHhEEEeC-CCCEEEEEcCCccccccCccccccccCCCCceeeeChhhh-cCCCCCcHHH
Confidence            9999999999999999999999999998 8999999999998664322            359999965 4556999999


Q ss_pred             HHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCc
Q 005958          307 MRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       307 IWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      ||||||++|||++ |++||.            +.....+...+....         .......+++++.+||.+||+.||
T Consensus       555 vwSlGv~l~ellt~G~~Pf~------------~~~~~~~~~~i~~~~---------~~~~p~~~~~~l~~li~~cl~~dP  613 (635)
T 4fl3_A          555 VWSFGVLMWEAFSYGQKPYR------------GMKGSEVTAMLEKGE---------RMGCPAGCPREMYDLMNLCWTYDV  613 (635)
T ss_dssp             HHHHHHHHHHHHTTTCCSST------------TCCHHHHHHHHHTTC---------CCCCCTTCCHHHHHHHHHHTCSST
T ss_pred             HHHHHHHHHHHHhCCCCCCC------------CCCHHHHHHHHHcCC---------CCCCCCCCCHHHHHHHHHHcCCCH
Confidence            9999999999998 999985            333333333332211         122345678999999999999999


Q ss_pred             CCCCCHHHHHc
Q 005958          386 SKRISCLDALR  396 (667)
Q Consensus       386 ~kRpSa~elL~  396 (667)
                      ++|||++++++
T Consensus       614 ~~RPs~~~l~~  624 (635)
T 4fl3_A          614 ENRPGFAAVEL  624 (635)
T ss_dssp             TTSCCHHHHHH
T ss_pred             hHCcCHHHHHH
Confidence            99999999875

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=100.00  E-value=2.8e-38  Score=353.89  Aligned_cols=258  Identities=10%  Similarity=0.079  Sum_probs=200.7

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      ..++|++++.||+|+||    .||+|++..     +++.||||++........+.+|+++++.|.     .|++|..+..
T Consensus         5 i~~~y~i~~~LG~G~fG----~Vy~a~~~~-----~~~~vAvK~~~~~~~~~~~~~E~~il~~L~-----~~~~i~~i~~   70 (483)
T 3sv0_A            5 VGNKFRLGRKIGSGSFG----EIYLGTNIQ-----TNEEVAIKLENVKTKHPQLLYESKIYRILQ-----GGTGIPNVRW   70 (483)
T ss_dssp             ETTTEECCCCCEECSSC----EEEEEEETT-----TCCEEEEEEEETTCSSCCHHHHHHHHHHTT-----TSTTCCCEEE
T ss_pred             cCCcEEEEEEEeeCCCE----EEEEEEECC-----CCcEEEEEEeccccccHHHHHHHHHHHHhc-----CCCCCCeEEE
Confidence            34789999999999999    999999987     799999999886655566889999999997     4577777766


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++.     ..+..+|||| |+ +++|.+++....        ..+++                    ..++.|+.||+.|
T Consensus        71 ~~~-----~~~~~~lvme-~~-g~sL~~ll~~~~--------~~l~~--------------------~~~~~i~~qi~~a  115 (483)
T 3sv0_A           71 FGV-----EGDYNVLVMD-LL-GPSLEDLFNFCS--------RKLSL--------------------KTVLMLADQMINR  115 (483)
T ss_dssp             EEE-----ETTEEEEEEE-CC-CCBHHHHHHHTT--------TCCCH--------------------HHHHHHHHHHHHH
T ss_pred             EEe-----eCCEEEEEEE-CC-CCCHHHHHHhhc--------CCCCH--------------------HHHHHHHHHHHHH
Confidence            666     6788999999 99 669999998632        14554                    4578899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEc---CCCCeEEEeeecccccccCC----------------CCCCCCcccccCCCCCCch
Q 005958          244 VNYLHSHGLAHTELRLENVHIS---PVDRHIKVGILGNAADFYED----------------GPNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~---~~~~~vKL~DFGlA~~~~~~----------------~~~Y~APE~l~~~~~ys~k  304 (667)
                      |.|||++||+||||||+||||+   . ++.+||+|||+|+.+...                .+.|+|||++. ...|+.+
T Consensus       116 L~yLH~~gIvHrDIKP~NILl~~~~~-~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~-~~~~s~~  193 (483)
T 3sv0_A          116 VEFVHSKSFLHRDIKPDNFLMGLGRR-ANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHL-GIEQSRR  193 (483)
T ss_dssp             HHHHHHTTEECCCCCGGGEEECCGGG-TTCEEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHT-TCCCCHH
T ss_pred             HHHHHHCCEeecccCcceEEEecCCC-CCeEEEEeCCcceeccCCccccccccccccccCCCccccCHHHhc-CCCCChH
Confidence            9999999999999999999994   4 789999999999865432                25799999654 4568999


Q ss_pred             hhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          305 FDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       305 sDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      +|||||||++|||++|+.||.....        ......+...........      .......+++++.+||.+||+.|
T Consensus       194 sDvwSlGvil~elltG~~Pf~~~~~--------~~~~~~~~~i~~~~~~~~------~~~l~~~~p~~l~~li~~cl~~d  259 (483)
T 3sv0_A          194 DDLESLGYVLMYFLRGSLPWQGLKA--------GTKKQKYEKISEKKVATS------IEALCRGYPTEFASYFHYCRSLR  259 (483)
T ss_dssp             HHHHHHHHHHHHHHHSSCTTSSCCC--------SSHHHHHHHHHHHHHHSC------HHHHHTTSCHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHhCCCCCccccc--------hhHHHHHHHHhhcccccc------HHHHhcCCcHHHHHHHHHHhcCC
Confidence            9999999999999999999963211        000111111111111110      01122456789999999999999


Q ss_pred             cCCCCCHHHHH----------cCCCCCCCCCC
Q 005958          385 PSKRISCLDAL----------RHPFLCGPRWR  406 (667)
Q Consensus       385 P~kRpSa~elL----------~HPwf~~~~~~  406 (667)
                      |++||++.+++          .|+|+...+|.
T Consensus       260 P~~RPs~~el~~~L~~l~~~~~~~~~~~~dW~  291 (483)
T 3sv0_A          260 FDDKPDYSYLKRLFRDLFIREGFQFDYVFDWT  291 (483)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHTTCCCSSCCHHH
T ss_pred             hhhCcCHHHHHHHHHHHHHHcCCCccCCcCch
Confidence            99999998865          47888777764

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=100.00  E-value=1.9e-40  Score=352.72  Aligned_cols=255  Identities=10%  Similarity=-0.008  Sum_probs=190.2

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh----------HHHHHHHHHHHHHHhhccC
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA----------QRRGRRAIEVLKKLVRRRL  152 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~----------~~~~~rEi~iL~~L~~~~~  152 (667)
                      +..++|++++.||+|+||    +||+|++.       ++.||||++.....          .+.+.+|+.+|++++....
T Consensus        17 ~~~~~y~~~~~lG~G~~g----~V~~~~~~-------~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~   85 (336)
T 2vuw_A           17 LPTEKLQRCEKIGEGVFG----EVFQTIAD-------HTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSG   85 (336)
T ss_dssp             SCHHHHHTCEEEEEETTE----EEEEEEET-------TEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGG
T ss_pred             cccccchheeeecccCce----EEEEEEeC-------CceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhc
Confidence            456889999999999999    99999873       69999999986432          2678899999999963222


Q ss_pred             C---CCCcceEEEEEEEecc-------------------------cCCCCeEEEEEccCCCCCCHHHHHHhcCCCccccc
Q 005958          153 M---YHSYSMQVHGYVSSHT-------------------------TSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEA  204 (667)
Q Consensus       153 ~---~HpnIv~l~~~~~~~~-------------------------~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~  204 (667)
                      +   .||||+++++++...+                         ..+.+.+||||| |+.+|++.+.+.+.        
T Consensus        86 ~~~~~h~niv~l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E-~~~~g~ll~~~~~~--------  156 (336)
T 2vuw_A           86 EVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLE-FEFGGIDLEQMRTK--------  156 (336)
T ss_dssp             CSSSBCCCBCCEEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEE-EECCCEETGGGTTT--------
T ss_pred             cccccCCchhhhcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEE-ecCCCccHHHHHhc--------
Confidence            2   3888888887764211                         012678999999 99998777666431        


Q ss_pred             ccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH-HCCCcccCCCCCcEEEcCCCC--------------
Q 005958          205 TLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLH-SHGLAHTELRLENVHISPVDR--------------  269 (667)
Q Consensus       205 ~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLH-s~gIvHrDLKPeNILl~~~~~--------------  269 (667)
                        .+++                    ..++.|+.||+.||+||| ++||+||||||+|||++. ++              
T Consensus       157 --~~~~--------------------~~~~~i~~qi~~aL~~lH~~~~ivHrDlKp~NILl~~-~~~~~~~~~~~~~~~~  213 (336)
T 2vuw_A          157 --LSSL--------------------ATAKSILHQLTASLAVAEASLRFEHRDLHWGNVLLKK-TSLKKLHYTLNGKSST  213 (336)
T ss_dssp             --CCCH--------------------HHHHHHHHHHHHHHHHHHHHHCCBCSCCCGGGEEEEE-CSCSEEEEEETTEEEE
T ss_pred             --CCCH--------------------HHHHHHHHHHHHHHHHHHHhCCEeECCCCHHHEEEec-cCCcceeeeccCcccc
Confidence              3444                    467889999999999999 999999999999999998 55              


Q ss_pred             ------eEEEeeecccccccC----CCCCCCCcccccCCCCCCchhhHHHHHHH-HHHHHhCCCCChhhhhhhhhhhccC
Q 005958          270 ------HIKVGILGNAADFYE----DGPNNSSPDSNMDRRQMMIAFDMRCVGFM-MAKMVLRELMDPLIFTKFKSFLTKG  338 (667)
Q Consensus       270 ------~vKL~DFGlA~~~~~----~~~~Y~APE~l~~~~~ys~ksDIWSLGvi-LyemltG~~PF~~~~~~~~~~~~~g  338 (667)
                            .+||+|||+|+....    +.+.|+|||++.+..  +.++||||+|++ .++++.|..||......        
T Consensus       214 ~~~~~~~vkL~DFG~a~~~~~~~~~gt~~y~aPE~~~g~~--~~~~Diwsl~~~~~~~~~~g~~p~~~~~~~--------  283 (336)
T 2vuw_A          214 IPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFTGDG--DYQFDIYRLMKKENNNRWGEYHPYSNVLWL--------  283 (336)
T ss_dssp             EECTTEEEEECCCTTCBEEETTEEECCCCTTCSGGGCCCS--SHHHHHHHHHHHHHTTCTTSCCTHHHHHHH--------
T ss_pred             ccCCCceEEEeeccccEecCCCcEEEeecccChhhhcCCC--ccceehhhhhCCCCcccccccCCCcchhhh--------
Confidence                  899999999987654    348899999765443  889999998777 78899999998632100        


Q ss_pred             CChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHH-cCCCCC
Q 005958          339 IDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDAL-RHPFLC  401 (667)
Q Consensus       339 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL-~HPwf~  401 (667)
                            ......................+.+++++++||.+||++|     ||+|+| +||||+
T Consensus       284 ------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~d-----sa~e~l~~Hp~f~  336 (336)
T 2vuw_A          284 ------HYLTDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRTMLNFS-----SATDLLCQHSLFK  336 (336)
T ss_dssp             ------HHHHHHHHHTCCCSSCCCSHHHHHHHHHHHHHHHHGGGSS-----SHHHHHHHCGGGC
T ss_pred             ------hHHHHhhhhhhccCcccchhhhhhcCHHHHHHHHHHhccC-----CHHHHHhcCCCcC
Confidence                  0011111111111111112233456789999999999987     999999 999995

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=5.3e-38  Score=333.13  Aligned_cols=257  Identities=15%  Similarity=0.142  Sum_probs=189.8

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ....++|++.+.||+|+||    .||+|.+.       ++.||||++... ......+|++++..+.    +.||||+++
T Consensus        38 ~~~~~~y~~~~~lg~G~~g----~Vy~~~~~-------~~~vavK~~~~~-~~~~~~~e~~~~~~~~----l~h~ni~~~  101 (342)
T 1b6c_B           38 RTIARTIVLQESIGKGRFG----EVWRGKWR-------GEEVAVKIFSSR-EERSWFREAEIYQTVM----LRHENILGF  101 (342)
T ss_dssp             HHHHHHCEEEEEEEEETTE----EEEEEEET-------TEEEEEEEECGG-GHHHHHHHHHHHHHSC----CCCTTBCCE
T ss_pred             ccccccEEEEeeecCCCCc----EEEEEEEc-------CccEEEEEeCch-hHHHHHHHHHHHHHhh----cCCCcEEEE
Confidence            3345789999999999999    99999874       689999999764 3456788999998841    159999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.... .....+|+||| |+++|+|.+++.+.          .+++                    ..++.++.||+
T Consensus       102 ~~~~~~~~-~~~~~~~lv~e-~~~~g~L~~~l~~~----------~~~~--------------------~~~~~i~~~i~  149 (342)
T 1b6c_B          102 IAADNKDN-GTWTQLWLVSD-YHEHGSLFDYLNRY----------TVTV--------------------EGMIKLALSTA  149 (342)
T ss_dssp             EEEEECCC-SSCCCEEEEEC-CCTTCBHHHHHHHC----------CBCH--------------------HHHHHHHHHHH
T ss_pred             EeeecccC-CccceeEEEEe-ecCCCcHHHHHhcc----------CccH--------------------HHHHHHHHHHH
Confidence            99998321 01138999999 99999999999764          3444                    45788999999


Q ss_pred             HHHHHHH--------HCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-------------CCCCCCCcccccCCCC
Q 005958          242 IGVNYLH--------SHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-------------DGPNNSSPDSNMDRRQ  300 (667)
Q Consensus       242 ~aL~yLH--------s~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-------------~~~~Y~APE~l~~~~~  300 (667)
                      .||.|||        ++||+||||||+|||++. ++.+||+|||++.....             +.+.|+|||++.+...
T Consensus       150 ~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~-~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  228 (342)
T 1b6c_B          150 SGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKK-NGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSIN  228 (342)
T ss_dssp             HHHHHHHCCBCSTTCBCEEECSCCSGGGEEECT-TSCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCC
T ss_pred             HHHHHHHHHHhhhcccCCeeeCCCCHHHEEECC-CCCEEEEECCCceeccccccccccccccCCcCcccCCHhhhccccc
Confidence            9999999        899999999999999998 89999999999975543             2367999997655432


Q ss_pred             -----CCchhhHHHHHHHHHHHHhC----------CCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCccc
Q 005958          301 -----MMIAFDMRCVGFMMAKMVLR----------ELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQI  365 (667)
Q Consensus       301 -----ys~ksDIWSLGviLyemltG----------~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~  365 (667)
                           ++.++|||||||++|||++|          ..||.....       .......+..   ..............-.
T Consensus       229 ~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~-------~~~~~~~~~~---~~~~~~~~~~~~~~~~  298 (342)
T 1b6c_B          229 MKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVP-------SDPSVEEMRK---VVCEQKLRPNIPNRWQ  298 (342)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSC-------SSCCHHHHHH---HHTTSCCCCCCCGGGG
T ss_pred             ccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccCc-------CcccHHHHHH---HHHHHHhCCCCccccc
Confidence                 33789999999999999999          566642110       0011111222   1211111100000001


Q ss_pred             ccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcC
Q 005958          366 LDRNWGAGWNLLSLLLATKPSKRISCLDALRH  397 (667)
Q Consensus       366 ~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~H  397 (667)
                      ....++.+.+||.+||+.||++|||+.|+++|
T Consensus       299 ~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~  330 (342)
T 1b6c_B          299 SCEALRVMAKIMRECWYANGAARLTALRIKKT  330 (342)
T ss_dssp             TSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhccChhhCCCHHHHHHH
Confidence            12334689999999999999999999999875

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=100.00  E-value=2.3e-39  Score=372.96  Aligned_cols=275  Identities=18%  Similarity=0.169  Sum_probs=196.6

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      ...++|++.+.||+|+||    .||+|.+..     +++.||||++...   ...+.+.+|++++++++      ||||+
T Consensus        11 ~~~grY~i~~~LG~G~fG----~Vyla~~~~-----tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~------HpnIV   75 (676)
T 3qa8_A           11 QTCGPWEMKERLGTGGFG----YVLRWIHQD-----TGEQVAIKQCRQELSPKNRERWCLEIQIMKKLN------HPNVV   75 (676)
T ss_dssp             ------CCCCCCCBCSSS----BCCCCCCTT-----TTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCC------BTTBC
T ss_pred             CCCCCeEEEEEEeeCCCe----EEEEEEECC-----CCcEEEEEEecccCCHHHHHHHHHHHHHHHhCC------CCCCC
Confidence            345899999999999999    999999987     7999999998752   23456789999999994      99999


Q ss_pred             EEEEEEEecc-cCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          160 QVHGYVSSHT-TSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       160 ~l~~~~~~~~-~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      ++++++.... ....+..|+||| |+++|+|.+++......      ..+++                    ..++.++.
T Consensus        76 ~l~~v~~~~~~~~~~~~~~LVmE-y~~ggsL~~~L~~~~~~------~~lse--------------------~~i~~I~~  128 (676)
T 3qa8_A           76 SAREVPDGLQKLAPNDLPLLAME-YCEGGDLRKYLNQFENC------CGLKE--------------------GPIRTLLS  128 (676)
T ss_dssp             CEEECCTTTCCCCTTSSCCCEEE-CCSSCBHHHHHHSSSCT------TCCCS--------------------SHHHHHHH
T ss_pred             ceeeeecccccccCCCeEEEEEE-eCCCCCHHHHHHhcccC------CCCCH--------------------HHHHHHHH
Confidence            9999976311 113678899999 99999999999874311      12333                    45788999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCC---eEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhH
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDR---HIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~---~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDI  307 (667)
                      ||+.||.|||++||+||||||+|||++. ++   .+||+|||++......        .+.|+|||++ ....|+.++||
T Consensus       129 QLl~aL~yLHs~gIVHrDLKP~NILl~~-~g~~~~vKL~DFG~a~~~~~~~~~~~~~gt~~Y~APE~l-~~~~~s~ksDI  206 (676)
T 3qa8_A          129 DISSALRYLHENRIIHRDLKPENIVLQP-GPQRLIHKIIDLGYAKELDQGELCTEFVGTLQYLAPELL-EQKKYTVTVDY  206 (676)
T ss_dssp             HHHHHHHHHHHTTBCCCCCCSTTEEEEC-CSSSCEEEECSCCCCCBTTSCCCCCCCCSCCTTCSSCSS-CCSCCSTTHHH
T ss_pred             HHHHHHHHHHHCCCccCCCCHHHeEeec-CCCceeEEEcccccccccccccccccccCCcccCChHHh-ccCCCCchhHH
Confidence            9999999999999999999999999997 44   4999999999876543        3679999955 45679999999


Q ss_pred             HHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHH--HHHhccCCCCC---CCCcccccCCCHHHHHHHHHhhh
Q 005958          308 RCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFL--LQVLNRNSSSG---NTGFQILDRNWGAGWNLLSLLLA  382 (667)
Q Consensus       308 WSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~--~~~~~~~~~~~---~~~~~~~~~~s~e~~dLI~~~L~  382 (667)
                      |||||++|+|++|..||..............   .......  ...........   .........+++++.+||.+||.
T Consensus       207 wSLGviLyeLltG~~Pf~~~~~~~~~~~~i~---~~~~~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~  283 (676)
T 3qa8_A          207 WSFGTLAFECITGFRPFLPNWQPVQWHGKVR---EKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLM  283 (676)
T ss_dssp             HHHHHHHHHHHSSCSSCCSSCHHHHSSTTCC---------CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHCCCCCCcccchhhhhhhhh---cccchhhhhhhhhccccccccccCCchhhchhhhHHHHHHHHHHcc
Confidence            9999999999999999963221111100000   0000000  00000000000   00111233467899999999999


Q ss_pred             cCcCCCCCHHHHHcCCCCCCCC
Q 005958          383 TKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       383 ~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      +||++|||+.|+|+||||+...
T Consensus       284 ~DP~kRPTa~elL~hp~F~~l~  305 (676)
T 3qa8_A          284 WHQRQRGTDPQNPNVGCFQALD  305 (676)
T ss_dssp             SSCC---CCTTCCCCTTHHHHH
T ss_pred             CCHhhCcCHHHHhcCHHHHHHH
Confidence            9999999999999999998743

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=1.4e-38  Score=332.72  Aligned_cols=244  Identities=18%  Similarity=0.164  Sum_probs=187.1

Q ss_pred             eEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch------hhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           88 FKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV------QAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        88 y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~------~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      |..++.||+|+||    .||+|.+       +++.||||++...      ...+.+.+|+.+++.++      ||||+++
T Consensus        33 ~~~~~~lg~G~~g----~Vy~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~------h~~i~~~   95 (307)
T 2nru_A           33 SVGGNKMGEGGFG----VVYKGYV-------NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQ------HENLVEL   95 (307)
T ss_dssp             TTTCCEEEECSSE----EEEEEES-------SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCC------CTTBCCE
T ss_pred             cccCCccccCCCe----EEEEEEE-------CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcC------CCCeEEE
Confidence            4445899999999    9999985       3689999998642      23456789999999995      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     ..+..++||| |+++|+|.+++.....      ...+++                    ..++.++.||+
T Consensus        96 ~~~~~-----~~~~~~lv~e-~~~~~~L~~~l~~~~~------~~~~~~--------------------~~~~~i~~~i~  143 (307)
T 2nru_A           96 LGFSS-----DGDDLCLVYV-YMPNGSLLDRLSCLDG------TPPLSW--------------------HMRCKIAQGAA  143 (307)
T ss_dssp             EEEEC-----SSSSCEEEEE-CCTTCBHHHHHHTGGG------CCCCCH--------------------HHHHHHHHHHH
T ss_pred             EEEEe-----cCCceEEEEE-ecCCCcHHHHHHhccC------CCCCCH--------------------HHHHHHHHHHH
Confidence            99998     7788999999 9999999999975321      113443                    56788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-----------CCCCCCCcccccCCCCCCchhhHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-----------DGPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-----------~~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      .||.|||++||+||||||+|||++. ++.+||+|||++.....           +.+.|+|||.+.+  .++.++|||||
T Consensus       144 ~~l~~lH~~~i~H~dlkp~Nili~~-~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~--~~~~~~Dv~sl  220 (307)
T 2nru_A          144 NGINFLHENHHIHRDIKSANILLDE-AFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG--EITPKSDIYSF  220 (307)
T ss_dssp             HHHHHHHHTTEECSCCCGGGEEECT-TCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT--EECTHHHHHHH
T ss_pred             HHHHHHhcCCeecCCCCHHHEEEcC-CCcEEEeecccccccccccccccccccCCCcCcCChHHhcC--CCCccchhHHH
Confidence            9999999999999999999999998 89999999999875543           2367999996543  48899999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHH-------HHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhc
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFL-------LQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLAT  383 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~  383 (667)
                      ||++|+|++|.+||........        ...+.+.+       ...+....      .......++++.+||.+||+.
T Consensus       221 G~il~~l~~g~~p~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~li~~cl~~  286 (307)
T 2nru_A          221 GVVLLEIITGLPAVDEHREPQL--------LLDIKEEIEDEEKTIEDYIDKKM------NDADSTSVEAMYSVASQCLHE  286 (307)
T ss_dssp             HHHHHHHHHCCCSBCTTBSSSB--------TTHHHHHHHTTSCCHHHHSCSSC------SCCCHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHCCCCcccCcchHH--------HHHHHHHhhhhhhhhhhhccccc------cccchHHHHHHHHHHHHHcCC
Confidence            9999999999999963211100        00111110       00000000      011223456899999999999


Q ss_pred             CcCCCCCHHHHHcC
Q 005958          384 KPSKRISCLDALRH  397 (667)
Q Consensus       384 DP~kRpSa~elL~H  397 (667)
                      ||++|||+.+++++
T Consensus       287 ~p~~Rps~~~l~~~  300 (307)
T 2nru_A          287 KKNKRPDIKKVQQL  300 (307)
T ss_dssp             STTTSCCHHHHHHH
T ss_pred             CcccCcCHHHHHHH
Confidence            99999999999864

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=3.5e-37  Score=357.40  Aligned_cols=247  Identities=15%  Similarity=0.152  Sum_probs=197.4

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      ...+..++|++.+.||+|+||    .||+|.+....  ..+..||||.+...   ...+.+.+|+.++++++      ||
T Consensus       384 ~~~i~~~~y~i~~~LG~G~fG----~Vy~a~~~~~~--~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~------Hp  451 (656)
T 2j0j_A          384 DYEIQRERIELGRCIGEGQFG----DVHQGIYMSPE--NPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFD------HP  451 (656)
T ss_dssp             GTBCCGGGEEEEEEEECCSSC----CEEEEEECCSS--SCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCC------CT
T ss_pred             ccccccccEEEeeEEeeCCCE----EEEEEEEecCC--CccEEEEEEEecccCCHHHHHHHHHHHHHHHhCC------CC
Confidence            345566889999999999999    99999987522  14578999998753   23356789999999994      99


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||+++++++.      .+..|+||| |+++|+|.+++...+        ..+++                    ..+..+
T Consensus       452 nIv~l~~~~~------~~~~~lv~E-~~~~g~L~~~l~~~~--------~~l~~--------------------~~~~~i  496 (656)
T 2j0j_A          452 HIVKLIGVIT------ENPVWIIME-LCTLGELRSFLQVRK--------FSLDL--------------------ASLILY  496 (656)
T ss_dssp             TBCCEEEEEC------SSSCEEEEE-CCTTCBHHHHHHHTT--------TTCCH--------------------HHHHHH
T ss_pred             CCCeEEEEEe------cCceEEEEE-cCCCCcHHHHHHhcc--------CCCCH--------------------HHHHHH
Confidence            9999999985      345899999 999999999998643        13443                    457789


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC----------CCCCCcccccCCCCCCchhh
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG----------PNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~----------~~Y~APE~l~~~~~ys~ksD  306 (667)
                      +.||+.||.|||++||+||||||+|||++. ++.+||+|||+|+......          +.|+|||++. ...|+.++|
T Consensus       497 ~~qi~~aL~~LH~~givHrDikp~NILl~~-~~~vkL~DFG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~~D  574 (656)
T 2j0j_A          497 AYQLSTALAYLESKRFVHRDIAARNVLVSS-NDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESIN-FRRFTSASD  574 (656)
T ss_dssp             HHHHHHHHHHHHHTTCCCSCCSGGGEEEEE-TTEEEECCCCCCCSCCC----------CCGGGCCHHHHH-HCCCCHHHH
T ss_pred             HHHHHHHHHHHHhCCccccccchHhEEEeC-CCCEEEEecCCCeecCCCcceeccCCCCCcceeCHHHhc-CCCCCchhh
Confidence            999999999999999999999999999998 8999999999998664332          4699999654 456999999


Q ss_pred             HHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCc
Q 005958          307 MRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       307 IWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      ||||||++|||++ |.+||.+            .........+..   ..      ..+..+.+++++.+||.+||..||
T Consensus       575 iwSlG~il~ellt~g~~Pf~~------------~~~~~~~~~i~~---~~------~~~~~~~~~~~l~~li~~~l~~dP  633 (656)
T 2j0j_A          575 VWMFGVCMWEILMHGVKPFQG------------VKNNDVIGRIEN---GE------RLPMPPNCPPTLYSLMTKCWAYDP  633 (656)
T ss_dssp             HHHHHHHHHHHHTTSCCTTTT------------CCHHHHHHHHHH---TC------CCCCCTTCCHHHHHHHHHHTCSSG
T ss_pred             HHHHHHHHHHHHHcCCCCCCC------------CCHHHHHHHHHc---CC------CCCCCccccHHHHHHHHHHcCCCh
Confidence            9999999999997 9999852            222222222221   11      122345678999999999999999


Q ss_pred             CCCCCHHHHHc
Q 005958          386 SKRISCLDALR  396 (667)
Q Consensus       386 ~kRpSa~elL~  396 (667)
                      ++|||+.++++
T Consensus       634 ~~RPs~~el~~  644 (656)
T 2j0j_A          634 SRRPRFTELKA  644 (656)
T ss_dssp             GGSCCHHHHHH
T ss_pred             hHCcCHHHHHH
Confidence            99999999986

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=100.00  E-value=2.1e-38  Score=333.01  Aligned_cols=244  Identities=13%  Similarity=0.120  Sum_probs=190.3

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCC
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMY  154 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~  154 (667)
                      ..+.+..++|++.+.||+|+||    .||+|.+..        .||+|++....    ..+.+.+|+.+++.++      
T Consensus        26 ~~~~i~~~~~~~~~~lg~G~~g----~V~~~~~~~--------~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~------   87 (319)
T 2y4i_B           26 QEWDIPFEQLEIGELIGKGRFG----QVYHGRWHG--------EVAIRLIDIERDNEDQLKAFKREVMAYRQTR------   87 (319)
T ss_dssp             GGSSSCCSCEECCCBCCCSSSS----EEEEEEESS--------SEEEEECCCCSCCCCCCCCCCTTGGGGTTCC------
T ss_pred             ccccCCHHHeEEeeEeccCCce----EEEEEEEcC--------eEEEEEeecCCCCHHHHHHHHHHHHHHhcCC------
Confidence            4556778999999999999999    999998764        39999987532    1234578999999884      


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      ||||+++++++.     ..+.+++||| |+++++|.+++...+        ..+++                    ..++
T Consensus        88 h~~iv~~~~~~~-----~~~~~~iv~e-~~~~~~L~~~l~~~~--------~~~~~--------------------~~~~  133 (319)
T 2y4i_B           88 HENVVLFMGACM-----SPPHLAIITS-LCKGRTLYSVVRDAK--------IVLDV--------------------NKTR  133 (319)
T ss_dssp             CTTBCCCCEEEE-----CSSCEEEECB-CCCSEEHHHHTTSSC--------CCCCS--------------------HHHH
T ss_pred             CCCEeEEEEEEe-----cCCceEEEee-cccCCcHHHHHHhcC--------CCCCH--------------------HHHH
Confidence            999999999999     7788999999 999999999997643        13443                    4578


Q ss_pred             HHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC--------------CCCCCCCcccccC---
Q 005958          235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE--------------DGPNNSSPDSNMD---  297 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~--------------~~~~Y~APE~l~~---  297 (667)
                      .++.||+.||.|||++||+||||||+|||++  ++.+||+|||++.....              +.+.|+|||++..   
T Consensus       134 ~i~~qi~~al~~lH~~~i~H~dlkp~NIl~~--~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~  211 (319)
T 2y4i_B          134 QIAQEIVKGMGYLHAKGILHKDLKSKNVFYD--NGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSP  211 (319)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCCCSTTEEEC----CCEECCCSCCC----------CCSCBCCSGGGGTSCHHHHSCBSC
T ss_pred             HHHHHHHHHHHHHHhCCccccCCChhhEEEe--CCCEEEeecCCccccccccccccccccccCCCcccccChHHhhhccc
Confidence            8999999999999999999999999999998  57999999999765421              2256999997654   


Q ss_pred             -----CCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHH
Q 005958          298 -----RRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGA  372 (667)
Q Consensus       298 -----~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e  372 (667)
                           ...|+.++|||||||++|||++|+.||..            .........+.   ....+     ......++++
T Consensus       212 ~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~------------~~~~~~~~~~~---~~~~~-----~~~~~~~~~~  271 (319)
T 2y4i_B          212 DTEEDKLPFSKHSDVFALGTIWYELHAREWPFKT------------QPAEAIIWQMG---TGMKP-----NLSQIGMGKE  271 (319)
T ss_dssp             C--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSS------------CCHHHHHHHHH---TTCCC-----CCCCSSCCTT
T ss_pred             cccccccCCCchhhHHHHHHHHHHHHhCCCCCCC------------CCHHHHHHHhc---cCCCC-----CCCcCCCCHH
Confidence                 34689999999999999999999999852            22222222211   11111     0112346779


Q ss_pred             HHHHHHHhhhcCcCCCCCHHHHHc
Q 005958          373 GWNLLSLLLATKPSKRISCLDALR  396 (667)
Q Consensus       373 ~~dLI~~~L~~DP~kRpSa~elL~  396 (667)
                      +.+||.+||..||++|||+.++++
T Consensus       272 l~~li~~~l~~~p~~Rpt~~~l~~  295 (319)
T 2y4i_B          272 ISDILLFCWAFEQEERPTFTKLMD  295 (319)
T ss_dssp             HHHHHHHHHCSSTTTSCCHHHHHH
T ss_pred             HHHHHHHHhcCChhhCcCHHHHHH
Confidence            999999999999999999999987

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=100.00  E-value=5e-37  Score=320.40  Aligned_cols=223  Identities=13%  Similarity=-0.010  Sum_probs=178.4

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      +..++|++.+.||+|+||    .||+|++..     +++.||||++....     ..+.+.+|+.++.++      .|||
T Consensus        28 ~~~~~y~i~~~lg~G~~g----~Vy~a~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l------~hp~   92 (286)
T 3uqc_A           28 IANGRYRLLIFHGGVPPL----QFWQALDTA-----LDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRI------DKPG   92 (286)
T ss_dssp             ETTTTEEEEEEEEBSTTC----EEEEEEETT-----TTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTC------CCTT
T ss_pred             EecCcEEEEEEEcccCCe----EEEEEEecC-----CCceEEEEEECcccccCHHHHHHHHHHHHHHhcC------CCCC
Confidence            445789999999999999    999999987     79999999997532     225678999999888      5999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     ..+..|+||| |+++++|.++++..           ..+                    ..+..++
T Consensus        93 iv~~~~~~~-----~~~~~~lv~e-~~~g~~L~~~l~~~-----------~~~--------------------~~~~~i~  135 (286)
T 3uqc_A           93 VARVLDVVH-----TRAGGLVVAE-WIRGGSLQEVADTS-----------PSP--------------------VGAIRAM  135 (286)
T ss_dssp             BCCEEEEEE-----ETTEEEEEEE-CCCEEEHHHHHTTC-----------CCH--------------------HHHHHHH
T ss_pred             cceeeEEEE-----ECCcEEEEEE-ecCCCCHHHHHhcC-----------CCh--------------------HHHHHHH
Confidence            999999998     6788999999 99999999998542           122                    2456799


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCCCCCCCcccccCCCCCCchhhHHHHHHHHHHH
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKM  317 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyem  317 (667)
                      .||+.||+|||++||+||||||+|||++. ++.+||+++|.           ++        .++.++|||||||++|||
T Consensus       136 ~ql~~aL~~lH~~givH~Dikp~NIll~~-~g~~kl~~~~~-----------~~--------~~~~~~Di~slG~il~el  195 (286)
T 3uqc_A          136 QSLAAAADAAHRAGVALSIDHPSRVRVSI-DGDVVLAYPAT-----------MP--------DANPQDDIRGIGASLYAL  195 (286)
T ss_dssp             HHHHHHHHHHHHTTCCCCCCSGGGEEEET-TSCEEECSCCC-----------CT--------TCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCccCCCCcccEEEcC-CCCEEEEeccc-----------cC--------CCCchhHHHHHHHHHHHH
Confidence            99999999999999999999999999998 89999986543           33        378999999999999999


Q ss_pred             HhCCCCChhhhhhhhh---hhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHH
Q 005958          318 VLRELMDPLIFTKFKS---FLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDA  394 (667)
Q Consensus       318 ltG~~PF~~~~~~~~~---~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~el  394 (667)
                      ++|+.||.+.......   .........                  ........+++++.+||.+||+.||++| |+.|+
T Consensus       196 ltg~~Pf~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el  256 (286)
T 3uqc_A          196 LVNRWPLPEAGVRSGLAPAERDTAGQPI------------------EPADIDRDIPFQISAVAARSVQGDGGIR-SASTL  256 (286)
T ss_dssp             HHSEECSCCCSBCCCSEECCBCTTSCBC------------------CHHHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHH
T ss_pred             HHCCCCCCcCCcchhhHHHHHHhccCCC------------------ChhhcccCCCHHHHHHHHHHcccCCccC-CHHHH
Confidence            9999999743221100   000000000                  0011234678899999999999999999 99999


Q ss_pred             Hc
Q 005958          395 LR  396 (667)
Q Consensus       395 L~  396 (667)
                      ++
T Consensus       257 ~~  258 (286)
T 3uqc_A          257 LN  258 (286)
T ss_dssp             HH
T ss_pred             HH
Confidence            86

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=4.5e-38  Score=345.24  Aligned_cols=258  Identities=13%  Similarity=-0.004  Sum_probs=184.3

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhcc---------
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRR---------  151 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~---------  151 (667)
                      ..|.+.+.||+|+||    +||+|++..     +++.||||++....     ..+.+.+|+.+++.+.+..         
T Consensus        78 ~~~~~~~~LG~G~fG----~Vy~a~~~~-----~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~  148 (413)
T 3dzo_A           78 RTLVRGTVLGQEDPY----AYLEATDQE-----TGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHL  148 (413)
T ss_dssp             EEEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHT
T ss_pred             eeEEEecccccCCCE----EEEEEEecC-----CCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhc
Confidence            458899999999999    999999998     89999999988321     2356789999998885210         


Q ss_pred             -CC------CCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCC
Q 005958          152 -LM------YHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGP  224 (667)
Q Consensus       152 -~~------~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~  224 (667)
                       .+      .+++...+..++..........++++|+ ++.+ +|.++++......                      ..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~L~~ll~~l~~~~----------------------~~  204 (413)
T 3dzo_A          149 RFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYP-RMQS-NLQTFGEVLLSHS----------------------ST  204 (413)
T ss_dssp             CBCCCCEEEECCC---------------CCSEEEEEE-CCSE-EHHHHHHHHHHHT----------------------TT
T ss_pred             ccccchhhcccCCCCccccccCCCccccccceEEEee-hhcC-CHHHHHHHhhccc----------------------cc
Confidence             00      0011111112222110001345788999 7776 9999996321000                      00


Q ss_pred             CccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeeccccccc------CCCCCCCCccccc--
Q 005958          225 AASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFY------EDGPNNSSPDSNM--  296 (667)
Q Consensus       225 ~~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~------~~~~~Y~APE~l~--  296 (667)
                      ...++...+..++.||+.||+|||++||+||||||+|||++. ++.+||+|||+|+...      .+ +.|+|||++.  
T Consensus       205 ~~~l~~~~~~~i~~qi~~aL~~LH~~~iiHrDiKp~NILl~~-~~~~kL~DFG~a~~~~~~~~~~~g-~~y~aPE~~~~~  282 (413)
T 3dzo_A          205 HKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQ-RGGVFLTGFEHLVRDGASAVSPIG-RGFAPPETTAER  282 (413)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECT-TCCEEECCGGGCEETTEEECCCCC-TTTCCHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcccceEEEec-CCeEEEEeccceeecCCccccCCC-CceeCchhhhcc
Confidence            112334567888999999999999999999999999999998 8899999999987543      23 8999999763  


Q ss_pred             -------CCCCCCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCC
Q 005958          297 -------DRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRN  369 (667)
Q Consensus       297 -------~~~~ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  369 (667)
                             ....|+.++|||||||++|||++|+.||.......            .   ....           +.....+
T Consensus       283 ~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~~~~------------~---~~~~-----------~~~~~~~  336 (413)
T 3dzo_A          283 MLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAALG------------G---SEWI-----------FRSCKNI  336 (413)
T ss_dssp             TSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCCCTTGGGS------------C---SGGG-----------GSSCCCC
T ss_pred             ccccccccCcCCCchhhHHHHHHHHHHHHHCCCCCCCcchhh------------h---HHHH-----------HhhcccC
Confidence                   45568899999999999999999999996322110            0   0001           1122356


Q ss_pred             CHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          370 WGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       370 s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      ++++++||.+||+.||++|||+.|+++||||++..
T Consensus       337 ~~~~~~li~~~l~~dP~~Rpt~~~~l~~~~~~~~~  371 (413)
T 3dzo_A          337 PQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQLR  371 (413)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHHHH
T ss_pred             CHHHHHHHHHHccCChhhCcCHHHHHhCHHHHHHH
Confidence            78999999999999999999999999999997643

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.7e-36  Score=353.13  Aligned_cols=241  Identities=20%  Similarity=0.301  Sum_probs=188.7

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      ...++|++.+.||+|+||    +||+|.+...    +++.||||++...   .....+.+|++++++++      ||||+
T Consensus        77 ~~~~~y~i~~~lg~G~~g----~Vy~a~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~------hp~iv  142 (681)
T 2pzi_A           77 IVAGQYEVKGCIAHGGLG----WIYLALDRNV----NGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVV------HPSIV  142 (681)
T ss_dssp             EETTTEEEEEEEEEETTE----EEEEEEEGGG----TTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCC------CTTBC
T ss_pred             EeCCceEEEEEEeeCCCe----EEEEEEEcCC----CCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcC------CCCcC
Confidence            445899999999999999    9999999752    5799999998653   23345688999999984      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++...........||||| |+++++|.+++..           .+++                    ..++.|+.|
T Consensus       143 ~~~~~~~~~~~~~~~~~~lv~E-~~~g~~L~~~~~~-----------~l~~--------------------~~~~~~~~q  190 (681)
T 2pzi_A          143 QIFNFVEHTDRHGDPVGYIVME-YVGGQSLKRSKGQ-----------KLPV--------------------AEAIAYLLE  190 (681)
T ss_dssp             CEEEEEEEECTTSCEEEEEEEE-CCCCEECC----C-----------CCCH--------------------HHHHHHHHH
T ss_pred             eEeeeEeecCCCCCceeEEEEE-eCCCCcHHHHHhC-----------CCCH--------------------HHHHHHHHH
Confidence            9999998543222233799999 9999999887653           3444                    457889999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-----CCCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-----DGPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-----~~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      |+.||.|||++||+||||||+|||++.  +.+||+|||+++....     +.+.|+|||++.+.  ++.++|||||||++
T Consensus       191 i~~aL~~lH~~giiHrDlkp~NIll~~--~~~kl~DFG~a~~~~~~~~~~gt~~y~aPE~~~~~--~~~~sDi~slG~~l  266 (681)
T 2pzi_A          191 ILPALSYLHSIGLVYNDLKPENIMLTE--EQLKLIDLGAVSRINSFGYLYGTPGFQAPEIVRTG--PTVATDIYTVGRTL  266 (681)
T ss_dssp             HHHHHHHHHHTTEECCCCSGGGEEECS--SCEEECCCTTCEETTCCSCCCCCTTTSCTTHHHHC--SCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCeecccChHHeEEeC--CcEEEEecccchhcccCCccCCCccccCHHHHcCC--CCCceehhhhHHHH
Confidence            999999999999999999999999996  4899999999987654     34789999966443  58999999999999


Q ss_pred             HHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHH
Q 005958          315 AKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDA  394 (667)
Q Consensus       315 yemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~el  394 (667)
                      |+|++|.+||.....       .+.+..                     ......++.+.+||.+||++||++||++.++
T Consensus       267 ~~l~~g~~~~~~~~~-------~~~~~~---------------------~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~  318 (681)
T 2pzi_A          267 AALTLDLPTRNGRYV-------DGLPED---------------------DPVLKTYDSYGRLLRRAIDPDPRQRFTTAEE  318 (681)
T ss_dssp             HHHHSCCCEETTEEC-------SSCCTT---------------------CHHHHHCHHHHHHHHHHTCSSGGGSCSSHHH
T ss_pred             HHHHhCCCCCccccc-------cccccc---------------------ccccccCHHHHHHHhhhccCChhhCCCHHHH
Confidence            999999988753210       000000                     0011234688999999999999999999999


Q ss_pred             HcCCCCC
Q 005958          395 LRHPFLC  401 (667)
Q Consensus       395 L~HPwf~  401 (667)
                      +.|+|+.
T Consensus       319 l~~~l~~  325 (681)
T 2pzi_A          319 MSAQLTG  325 (681)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988864

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.97  E-value=1.6e-31  Score=304.81  Aligned_cols=179  Identities=12%  Similarity=-0.034  Sum_probs=128.0

Q ss_pred             EEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch------------hhHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           90 ILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV------------QAQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        90 i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~------------~~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      -...++.|++|    .+..++...     +|+.||||++.+.            ...+++.+|+++|+++.     .|+|
T Consensus       238 w~~~~~~~~~~----~h~~~rr~~-----fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~-----~~~~  303 (569)
T 4azs_A          238 WQNQPYAGAGL----AHKRSRRYF-----FGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPP-----AGFD  303 (569)
T ss_dssp             EECC-C------------CCEEEE-----ECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCC-----TTCC
T ss_pred             hhhccccCCcc----ccccccccc-----ccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcC-----CCCC
Confidence            34456778888    777777776     7999999999742            22345789999999997     6999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |++++++++     +++.+||||| |++||+|.++|.+.+         .+++                       ..|+
T Consensus       304 i~~~~~~~e-----d~~~~yLVME-yv~G~~L~d~i~~~~---------~l~~-----------------------~~I~  345 (569)
T 4azs_A          304 APAVLAHGE-----NAQSGWLVME-KLPGRLLSDMLAAGE---------EIDR-----------------------EKIL  345 (569)
T ss_dssp             CCCEEEEEE-----CSSEEEEEEE-CCCSEEHHHHHHTTC---------CCCH-----------------------HHHH
T ss_pred             eeEEEEEEE-----ECCEEEEEEe-cCCCCcHHHHHHhCC---------CCCH-----------------------HHHH
Confidence            999999999     8899999999 999999999998765         4443                       2489


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC---------CCCCCcccccCCCCCCchhhHH
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG---------PNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~---------~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      .||+.||+|||++|||||||||+|||++. +|.+||+|||+|+......         +.|||||++.+  .+..++|+|
T Consensus       346 ~QIl~AL~ylH~~GIIHRDIKPeNILL~~-dg~vKL~DFGlAr~~~~~~~~~~t~vGTp~YmAPE~l~g--~~~~~~d~~  422 (569)
T 4azs_A          346 GSLLRSLAALEKQGFWHDDVRPWNVMVDA-RQHARLIDFGSIVTTPQDCSWPTNLVQSFFVFVNELFAE--NKSWNGFWR  422 (569)
T ss_dssp             HHHHHHHHHHHHTTCEESCCCGGGEEECT-TSCEEECCCTTEESCC---CCSHHHHHHHHHHHHHHC-------------
T ss_pred             HHHHHHHHHHHHCCceeccCchHhEEECC-CCCEEEeecccCeeCCCCCccccCceechhhccHHHhCC--CCCCccccc
Confidence            99999999999999999999999999998 8999999999998775542         67999996644  367789999


Q ss_pred             HHHHHHHHHHhCCCC
Q 005958          309 CVGFMMAKMVLRELM  323 (667)
Q Consensus       309 SLGviLyemltG~~P  323 (667)
                      |+|+++|+|.++..+
T Consensus       423 s~g~~~~~l~~~~~~  437 (569)
T 4azs_A          423 SAPVHPFNLPQPWSN  437 (569)
T ss_dssp             ------CCCCTTHHH
T ss_pred             ccccchhhhccccch
Confidence            999999988776543

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.90  E-value=1.4e-24  Score=246.15  Aligned_cols=173  Identities=10%  Similarity=-0.014  Sum_probs=132.2

Q ss_pred             EEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----------hHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           89 KILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----------AQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        89 ~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----------~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      ...+.||+|+||    +||+|..       .++.+|+|+.....          ..+.+.+|+++|++++      ||||
T Consensus       339 ~~~~~LG~G~fg----~Vy~~~~-------~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~------h~nI  401 (540)
T 3en9_A          339 IPEHLIGKGAEA----DIKRDSY-------LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVK------DFGI  401 (540)
T ss_dssp             ---------CCE----EEEEEEC-------SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGG------GGTC
T ss_pred             CCCCEEeeCCCE----EEEEEEE-------CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcC------CCCc
Confidence            446799999999    9999933       46889999864311          1234689999999995      9999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      +++..++.     ..+..||||| |+++|+|.+++..                                     +..++.
T Consensus       402 v~~~~~~~-----~~~~~~lVmE-~~~ggsL~~~l~~-------------------------------------~~~i~~  438 (540)
T 3en9_A          402 PAPYIFDV-----DLDNKRIMMS-YINGKLAKDVIED-------------------------------------NLDIAY  438 (540)
T ss_dssp             CCCCEEEE-----ETTTTEEEEE-CCCSEEHHHHSTT-------------------------------------CTHHHH
T ss_pred             CceEEEEE-----eCCccEEEEE-CCCCCCHHHHHHH-------------------------------------HHHHHH
Confidence            94444444     3345699999 9999999999874                                     134999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC----------------CCCCCCcccccC-CCCC
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED----------------GPNNSSPDSNMD-RRQM  301 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~----------------~~~Y~APE~l~~-~~~y  301 (667)
                      ||+.||.|||++||+||||||+|||++.   .+||+|||+|+.....                .+.|||||++.. ...|
T Consensus       439 qi~~aL~~LH~~gIiHrDiKp~NILl~~---~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y  515 (540)
T 3en9_A          439 KIGEIVGKLHKNDVIHNDLTTSNFIFDK---DLYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGY  515 (540)
T ss_dssp             HHHHHHHHHHHTTEECTTCCTTSEEESS---SEEECCCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCcCccCCCCHHHEEECC---eEEEEECccCEECCCccccccchhhhhhhhcCCCCcCCHHHHHHHHHHH
Confidence            9999999999999999999999999995   9999999999877652                278999996543 1457


Q ss_pred             CchhhHHHHHHHHHHHHhCCCCC
Q 005958          302 MIAFDMRCVGFMMAKMVLRELMD  324 (667)
Q Consensus       302 s~ksDIWSLGviLyemltG~~PF  324 (667)
                      +..+|+||..+-..+.+.++.+|
T Consensus       516 ~~~~d~ws~vl~~l~~v~~r~rY  538 (540)
T 3en9_A          516 KSVYDRWEIILELMKDVERRARY  538 (540)
T ss_dssp             HHHCTTHHHHHHHHHHHHTCSCC
T ss_pred             HHHHhHHHHHHHHHHHHHhcccc
Confidence            88899999999999888877654

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.88  E-value=1.4e-23  Score=218.73  Aligned_cols=141  Identities=15%  Similarity=0.085  Sum_probs=113.1

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--------------------hHHHHHHHHHHHHH
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--------------------AQRRGRRAIEVLKK  146 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--------------------~~~~~~rEi~iL~~  146 (667)
                      .|.+++.||+|+||    .||+|.+ .     +++.||||+++...                    ....+.+|+++|++
T Consensus        91 ~~~~~~~iG~G~~g----~Vy~~~~-~-----~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~  160 (282)
T 1zar_A           91 VDAIGKLMGEGKES----AVFNCYS-E-----KFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQK  160 (282)
T ss_dssp             CSEEEEEEEECSSE----EEEEEEE-T-----TTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCEeccCCCc----eEEEEEe-C-----CCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHh
Confidence            45566999999999    9999999 5     79999999996421                    23457899999999


Q ss_pred             HhhccCCCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCc
Q 005958          147 LVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAA  226 (667)
Q Consensus       147 L~~~~~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~  226 (667)
                      +.      |+++..   ++.      .+..|+||| |+++|+|.+ +..             .                 
T Consensus       161 l~------~~~v~~---~~~------~~~~~lvmE-~~~g~~L~~-l~~-------------~-----------------  193 (282)
T 1zar_A          161 LQ------GLAVPK---VYA------WEGNAVLME-LIDAKELYR-VRV-------------E-----------------  193 (282)
T ss_dssp             TT------TSSSCC---EEE------EETTEEEEE-CCCCEEGGG-CCC-------------S-----------------
T ss_pred             cc------CCCcCe---EEe------ccceEEEEE-ecCCCcHHH-cch-------------h-----------------
Confidence            93      344444   443      234699999 999999988 421             1                 


Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCCCCCCCcccc
Q 005958          227 SRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNSSPDSN  295 (667)
Q Consensus       227 ~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~~~Y~APE~l  295 (667)
                           ....++.||+.||.|||++||+||||||+|||++  ++.+||+|||+|+..    ..++|||.+
T Consensus       194 -----~~~~i~~qi~~~l~~lH~~giiHrDlkp~NILl~--~~~vkl~DFG~a~~~----~~~~a~e~l  251 (282)
T 1zar_A          194 -----NPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVS--EEGIWIIDFPQSVEV----GEEGWREIL  251 (282)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEE--TTEEEECCCTTCEET----TSTTHHHHH
T ss_pred             -----hHHHHHHHHHHHHHHHHHCCCEeCCCCHHHEEEE--CCcEEEEECCCCeEC----CCCCHHHHH
Confidence                 1356999999999999999999999999999999  799999999999755    457899954

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.79  E-value=1.7e-19  Score=184.97  Aligned_cols=136  Identities=15%  Similarity=0.079  Sum_probs=104.4

Q ss_pred             eEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcE--EEEEEEcchhh--------------------------HHHHHH
Q 005958           88 FKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTK--VVLRQLISVQA--------------------------QRRGRR  139 (667)
Q Consensus        88 y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~--vAvK~i~~~~~--------------------------~~~~~r  139 (667)
                      |++.+.||+|+||    .||+|.+..     +|+.  ||||+++....                          ...+.+
T Consensus        49 ~~i~~~ig~G~~g----~Vy~a~~~~-----~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (258)
T 1zth_A           49 TAMGGVISTGKEA----NVFYADGVF-----DGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEK  119 (258)
T ss_dssp             EEEEEEEEECSSE----EEEEEEEEE-----TTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHH
T ss_pred             hhhCCEEeecceE----EEEEEEEcC-----CCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHH
Confidence            7899999999999    999999965     6888  99999754210                          125689


Q ss_pred             HHHHHHHHhhccCCCCCcc--eEEEEEEEecccCCCCeEEEEEccCCCC-C----CHHHHHHhcCCCcccccccCCCHHH
Q 005958          140 AIEVLKKLVRRRLMYHSYS--MQVHGYVSSHTTSGRSLFTLVHGQYHGS-F----SLRHWLQQADWLPTLEATLALDEES  212 (667)
Q Consensus       140 Ei~iL~~L~~~~~~~HpnI--v~l~~~~~~~~~~~~~~~~lVmE~~~~~-G----sL~~~i~~~~~~~~l~~~~~l~E~~  212 (667)
                      |+.+|+.+.      |++|  ..+++.         +..+|||| |+++ |    +|.+++...            ++  
T Consensus       120 E~~~l~~l~------~~~i~~p~~~~~---------~~~~lVmE-~~g~~g~~~~~L~~~~~~~------------~~--  169 (258)
T 1zth_A          120 EFRNLERAK------EAGVSVPQPYTY---------MKNVLLME-FIGEDELPAPTLVELGREL------------KE--  169 (258)
T ss_dssp             HHHHHHHHH------HTTCCCCCEEEE---------ETTEEEEE-CCEETTEECCBHHHHGGGG------------GG--
T ss_pred             HHHHHHHHH------hCCCCCCeEEEc---------CCCEEEEE-ecCCCCCccccHHHHhhcc------------Ch--
Confidence            999999996      5543  333332         23589999 9853 4    666654321            11  


Q ss_pred             HhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH-HCCCcccCCCCCcEEEcCCCCeEEEeeeccccccc
Q 005958          213 VRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLH-SHGLAHTELRLENVHISPVDRHIKVGILGNAADFY  283 (667)
Q Consensus       213 a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLH-s~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~  283 (667)
                                        ..+..++.||+.||.||| ++||+||||||+|||++.   .++|+|||+|....
T Consensus       170 ------------------~~~~~i~~qi~~~l~~lH~~~givHrDlkp~NILl~~---~~~liDFG~a~~~~  220 (258)
T 1zth_A          170 ------------------LDVEGIFNDVVENVKRLYQEAELVHADLSEYNIMYID---KVYFIDMGQAVTLR  220 (258)
T ss_dssp             ------------------SCHHHHHHHHHHHHHHHHHTSCEECSSCSTTSEEESS---SEEECCCTTCEETT
T ss_pred             ------------------HHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEEEcC---cEEEEECcccccCC
Confidence                              235679999999999999 999999999999999985   89999999997653

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.67  E-value=5.2e-17  Score=175.56  Aligned_cols=135  Identities=14%  Similarity=0.121  Sum_probs=99.4

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh----------------H--------HHHHHHHH
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA----------------Q--------RRGRRAIE  142 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~----------------~--------~~~~rEi~  142 (667)
                      -|++++.||.|+||    .||+|.+.      +|+.||||+++....                .        -...+|..
T Consensus        96 iY~I~~~IG~Gk~a----~VY~a~d~------~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~  165 (397)
T 4gyi_A           96 VYSVGSRIGVGKES----DIMIVADE------KGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFA  165 (397)
T ss_dssp             CSEEEEEEEECSSE----EEEEEECT------TCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCEeeeCCce----EEEEEECC------CCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence            39999999999999    99999986      589999999763100                0        01246788


Q ss_pred             HHHHHhhccCCCCCcc--eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCC
Q 005958          143 VLKKLVRRRLMYHSYS--MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDS  220 (667)
Q Consensus       143 iL~~L~~~~~~~HpnI--v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~  220 (667)
                      .|.++.      +.++  ...++..         ..+|||| |++|++|.++..             ..           
T Consensus       166 nL~rL~------~~gv~vp~p~~~~---------~~~LVME-~i~G~~L~~l~~-------------~~-----------  205 (397)
T 4gyi_A          166 FMKALY------EEGFPVPEPIAQS---------RHTIVMS-LVDALPMRQVSS-------------VP-----------  205 (397)
T ss_dssp             HHHHHH------HTTCSCCCEEEEE---------TTEEEEE-CCSCEEGGGCCC-------------CS-----------
T ss_pred             HHHHHH------hcCCCCCeeeecc---------CceEEEE-ecCCccHhhhcc-------------cH-----------
Confidence            888884      3332  2223221         1379999 999988754321             11           


Q ss_pred             CCCCCccccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCC----------eEEEeeeccccccc
Q 005958          221 IGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDR----------HIKVGILGNAADFY  283 (667)
Q Consensus       221 ~~~~~~~~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~----------~vKL~DFGlA~~~~  283 (667)
                                 ..+.++.||+.+|.|||++|||||||||.|||++. ++          .+.|+||+-+....
T Consensus       206 -----------~~~~l~~qll~~l~~lH~~gIVHrDLKp~NILl~~-dgd~~d~~~~~~~~~iID~~Q~V~~~  266 (397)
T 4gyi_A          206 -----------DPASLYADLIALILRLAKHGLIHGDFNEFNILIRE-EKDAEDPSSITLTPIIIXFPQMVSMD  266 (397)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEEE-EECSSCTTSEEEEEEECCCTTCEETT
T ss_pred             -----------HHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeC-CCCcccccccccceEEEEeCCcccCC
Confidence                       23568899999999999999999999999999987 44          48999999886543

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.28  E-value=1.3e-11  Score=125.60  Aligned_cols=139  Identities=11%  Similarity=0.038  Sum_probs=109.5

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      .++.|++...++.|+++    .||++..       .++.+++|+....  .....+.+|+.+++.+.     .+..+.++
T Consensus        12 ~l~~~~~~~~~~g~s~~----~v~~~~~-------~~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~-----~~~~vP~v   75 (263)
T 3tm0_A           12 LIEKYRCVKDTEGMSPA----KVYKLVG-------ENENLYLKMTDSRYKGTTYDVEREKDMMLWLE-----GKLPVPKV   75 (263)
T ss_dssp             HHTTSEEEECCSCCSSS----EEEEEEC-------SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHT-----TTSCCCCE
T ss_pred             HhccceeEeeccCCCCC----eEEEEEC-------CCCcEEEEeCCcccCCCHHHHHHHHHHHHHHh-----cCCCCCeE
Confidence            35789999999988888    9999863       3578999998752  22345789999999996     46778889


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      +++..     ..+..|+||| +++|.+|.+.+..            ..                      ....++.++.
T Consensus        76 ~~~~~-----~~~~~~lv~e-~i~G~~l~~~~~~------------~~----------------------~~~~~~~~l~  115 (263)
T 3tm0_A           76 LHFER-----HDGWSNLLMS-EADGVLCSEEYED------------EQ----------------------SPEKIIELYA  115 (263)
T ss_dssp             EEEEE-----ETTEEEEEEE-CCSSEEHHHHCCT------------TT----------------------CHHHHHHHHH
T ss_pred             EEEEe-----cCCceEEEEE-ecCCeehhhccCC------------cc----------------------cHHHHHHHHH
Confidence            98887     6678999999 9999888775211            00                      1235788999


Q ss_pred             HHHHHHHH-----------------------------------------------------------CCCcccCCCCCcE
Q 005958          242 IGVNYLHS-----------------------------------------------------------HGLAHTELRLENV  262 (667)
Q Consensus       242 ~aL~yLHs-----------------------------------------------------------~gIvHrDLKPeNI  262 (667)
                      .+|..||+                                                           .+++|+|++|.||
T Consensus       116 ~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Ni  195 (263)
T 3tm0_A          116 ECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNI  195 (263)
T ss_dssp             HHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSE
T ss_pred             HHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcE
Confidence            99999998                                                           4589999999999


Q ss_pred             EEcCCCCeEEEeeeccc
Q 005958          263 HISPVDRHIKVGILGNA  279 (667)
Q Consensus       263 Ll~~~~~~vKL~DFGlA  279 (667)
                      |++. ++.+.|+||+.+
T Consensus       196 l~~~-~~~~~lIDwe~a  211 (263)
T 3tm0_A          196 FVKD-GKVSGFIDLGRS  211 (263)
T ss_dssp             EEET-TEEEEECCCTTC
T ss_pred             EEEC-CcEEEEEEchhc
Confidence            9986 555679999987

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.16  E-value=9.1e-11  Score=118.15  Aligned_cols=84  Identities=13%  Similarity=-0.008  Sum_probs=61.4

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCC-cceEEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHS-YSMQVHG  163 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~Hp-nIv~l~~  163 (667)
                      ...|.+....+.|..+    .||++...      +|..+++|+.... ....+.+|+.+++.+.     .|. .+.++++
T Consensus        19 ~~~~~~~~~~~gg~~~----~v~~~~~~------~g~~~vlK~~~~~-~~~~~~~E~~~l~~l~-----~~~~~vP~~~~   82 (264)
T 1nd4_A           19 LFGYDWAQQTIGCSDA----AVFRLSAQ------GRPVLFVKTDLSG-ALNELQDEAARLSWLA-----TTGVPCAAVLD   82 (264)
T ss_dssp             TTTCEEEECSCTTSSC----EEEEEECT------TSCCEEEEEECSC-TTSCHHHHHHHHHHHH-----TTTCCBCCEEE
T ss_pred             cCCCceEecccCCCCc----eEEEEecC------CCCeEEEEeCCcc-cchhhhHHHHHHHHHH-----hCCCCCCeEEE
Confidence            4567765554456667    99999653      4778999997654 2345688999999997     342 2566888


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLR  190 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~  190 (667)
                      +..     ..+..++||| |++|.+|.
T Consensus        83 ~~~-----~~~~~~~v~e-~i~G~~l~  103 (264)
T 1nd4_A           83 VVT-----EAGRDWLLLG-EVPGQDLL  103 (264)
T ss_dssp             EEE-----CSSCEEEEEE-CCSSEETT
T ss_pred             ecc-----CCCCCEEEEE-ecCCcccC
Confidence            877     5677999999 99997773

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.87  E-value=4.3e-09  Score=112.24  Aligned_cols=144  Identities=13%  Similarity=0.111  Sum_probs=100.2

Q ss_pred             EEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEc--chh---hHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           89 KILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLI--SVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        89 ~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~--~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      ..++.|+.|.++    .||++...       +..+++|+..  ...   ....+.+|+.+++.|..    .+..+.+++.
T Consensus        41 ~~~~~l~~G~sn----~~y~v~~~-------~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~----~~vpvP~~~~  105 (359)
T 3dxp_A           41 LSVEQFKGGQSN----PTFKLVTP-------GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAG----TDVPVAKMYA  105 (359)
T ss_dssp             CEEEECCC-CCS----CEEEEECS-------SCEEEEECCCC----------CHHHHHHHHHHHTT----SSSCCCCEEE
T ss_pred             ceEEEcCCcccc----eEEEEEEC-------CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhc----CCCCCCcEEE
Confidence            346789999999    99998754       4678999876  322   23457899999999962    2455788888


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++.+.  ...+..|+||| |++|..+.+...           ..+++                    .....++.+++.+
T Consensus       106 ~~~~~--~~~g~~~~vme-~v~G~~l~~~~~-----------~~l~~--------------------~~~~~~~~~l~~~  151 (359)
T 3dxp_A          106 LCEDE--SVIGRAFYIME-FVSGRVLWDQSL-----------PGMSP--------------------AERTAIYDEMNRV  151 (359)
T ss_dssp             EECCT--TTTSSCEEEEE-CCCCBCCCCTTC-----------TTCCH--------------------HHHHHHHHHHHHH
T ss_pred             ECCCC--CccCCeEEEEE-ecCCeecCCCcc-----------ccCCH--------------------HHHHHHHHHHHHH
Confidence            87622  12256899999 999866532100           02232                    3456688899999


Q ss_pred             HHHHHH----------------------------------------------------------CCCcccCCCCCcEEEc
Q 005958          244 VNYLHS----------------------------------------------------------HGLAHTELRLENVHIS  265 (667)
Q Consensus       244 L~yLHs----------------------------------------------------------~gIvHrDLKPeNILl~  265 (667)
                      |..||+                                                          .+++|+|++|.|||++
T Consensus       152 La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~  231 (359)
T 3dxp_A          152 IAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFH  231 (359)
T ss_dssp             HHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEEC
T ss_pred             HHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEe
Confidence            999997                                                          3689999999999999


Q ss_pred             CCC-CeEEEeeeccccc
Q 005958          266 PVD-RHIKVGILGNAAD  281 (667)
Q Consensus       266 ~~~-~~vKL~DFGlA~~  281 (667)
                      .++ ..+.|+||+.|..
T Consensus       232 ~~~~~v~~viDwe~a~~  248 (359)
T 3dxp_A          232 PTEPRVLAVLDWELSTL  248 (359)
T ss_dssp             SSSSCEEEECCCTTCEE
T ss_pred             CCCCcEEEEECcccccc
Confidence            733 2469999998853

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.78  E-value=4.4e-09  Score=109.59  Aligned_cols=183  Identities=10%  Similarity=0.007  Sum_probs=111.1

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEecccC
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTS  171 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~~~  171 (667)
                      +.++.|.+.    .||++.          ..+++|+.........+.+|..+|+.+.....+.   +.+++......  .
T Consensus        26 ~~~~~G~~n----~v~~v~----------~~~vlR~~~~~~~~~~~~~E~~~l~~l~~~~~v~---vP~~~~~~~~~--~   86 (304)
T 3sg8_A           26 EISGEGNDC----IAYEIN----------RDFIFKFPKHSRGSTNLFNEVNILKRIHNKLPLP---IPEVVFTGMPS--E   86 (304)
T ss_dssp             CEEEECSSE----EEEEST----------TSEEEEEESSHHHHHHHHHHHHHHHHHTTSSSSC---CCCEEEECCCC--S
T ss_pred             EecCCCCcc----eEEEEC----------CEEEEEecCCcchHHHHHHHHHHHHHHHhcCCCC---CCceEeecCCC--C
Confidence            458899998    888753          3589999766545567899999999995221222   33444433211  1


Q ss_pred             CCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHH--
Q 005958          172 GRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHS--  249 (667)
Q Consensus       172 ~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs--  249 (667)
                      .....|+||| +++|.+|.+....           .++++                    ....++.|++..|..||+  
T Consensus        87 ~~~~~~~vm~-~i~G~~l~~~~~~-----------~l~~~--------------------~~~~~~~~l~~~la~LH~~~  134 (304)
T 3sg8_A           87 TYQMSFAGFT-KIKGVPLTPLLLN-----------NLPKQ--------------------SQNQAAKDLARFLSELHSIN  134 (304)
T ss_dssp             SCSCSCEEEE-CCCCEECCHHHHH-----------TSCHH--------------------HHHHHHHHHHHHHHHHHHSC
T ss_pred             CCCcceEEEc-ccCCeECCccccc-----------cCCHH--------------------HHHHHHHHHHHHHHHHHcCC
Confidence            1234589999 9999777653221           12221                    123344444444444443  


Q ss_pred             --------------------------------------------------------CCCcccCCCCCcEEEcCC-CCeEE
Q 005958          250 --------------------------------------------------------HGLAHTELRLENVHISPV-DRHIK  272 (667)
Q Consensus       250 --------------------------------------------------------~gIvHrDLKPeNILl~~~-~~~vK  272 (667)
                                                                              ..++|+|++|.||+++.+ ++.+.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~  214 (304)
T 3sg8_A          135 ISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICG  214 (304)
T ss_dssp             CTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEE
T ss_pred             CCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEE
Confidence                                                                    247999999999999973 34578


Q ss_pred             EeeecccccccCCC-----CCC---CCcccc---c-CCCCC---------CchhhHHHHHHHHHHHHhCCCCCh
Q 005958          273 VGILGNAADFYEDG-----PNN---SSPDSN---M-DRRQM---------MIAFDMRCVGFMMAKMVLRELMDP  325 (667)
Q Consensus       273 L~DFGlA~~~~~~~-----~~Y---~APE~l---~-~~~~y---------s~ksDIWSLGviLyemltG~~PF~  325 (667)
                      |+||+.+.......     ..+   ..|+..   + ..+..         ..-.+.|++|.++|.+.+|.++|-
T Consensus       215 ~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~g~~~~~  288 (304)
T 3sg8_A          215 IIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHYKHKDIPTVLEKYRMKEKYWSFEKIIYGKEYGYMDWY  288 (304)
T ss_dssp             ECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             EEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            99999986543211     111   223311   0 00111         123689999999999999987653

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.35  E-value=7e-06  Score=83.23  Aligned_cols=88  Identities=11%  Similarity=0.066  Sum_probs=62.3

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYV  165 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~  165 (667)
                      ..|+. +.+..|..|   ..||+.....     .+..+++|+-... ....+.+|..+|+.|.     .+--+.+++++.
T Consensus        25 ~g~~~-~~~~~G~S~---~~v~rl~~~~-----~~~~~~lk~~~~~-~~~~~~~E~~~l~~l~-----~~vPVP~v~~~~   89 (272)
T 4gkh_A           25 YGYRW-ARDNVGQSG---ATIYRLYGKP-----NAPELFLKHGKGS-VANDVTDEMVRLNWLT-----AFMPLPTIKHFI   89 (272)
T ss_dssp             TTCEE-EEEECSSSS---CEEEEEECCT-----TCCCEEEEEEETH-HHHHHHHHHHHHHHHT-----TTSCCCCEEEEE
T ss_pred             cCCeE-EEccCCCcC---CeEEEEEecC-----CCeEEEEEECCCC-CHhHHHHHHHHHHHhc-----cCCCcCeEEEEE
Confidence            44544 344445555   1699887765     5678999986554 3456789999999996     343466778887


Q ss_pred             EecccCCCCeEEEEEccCCCCCCHHHHHH
Q 005958          166 SSHTTSGRSLFTLVHGQYHGSFSLRHWLQ  194 (667)
Q Consensus       166 ~~~~~~~~~~~~lVmE~~~~~GsL~~~i~  194 (667)
                      .     +.+..|+||| +++|.++.+...
T Consensus        90 ~-----~~~~~~lvme-~l~G~~~~~~~~  112 (272)
T 4gkh_A           90 R-----TPDDAWLLTT-AIPGKTAFQVLE  112 (272)
T ss_dssp             E-----ETTEEEEEEE-CCCSEEHHHHHH
T ss_pred             E-----ECCeEEEEEE-eeCCcccccccc
Confidence            7     5678999999 999988776554

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.32  E-value=7e-06  Score=85.59  Aligned_cols=79  Identities=15%  Similarity=-0.032  Sum_probs=54.7

Q ss_pred             EeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEeccc
Q 005958           91 LDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTT  170 (667)
Q Consensus        91 ~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~~  170 (667)
                      ++.++.|...    .||+.          +..+++|+-........+.+|..+|+.|.+...   -.|.+++.+.. .  
T Consensus        24 v~~l~~G~~n----~v~~v----------g~~~VlR~~~~~~~~~~~~~E~~~L~~L~~~~~---v~VP~~~~~~~-~--   83 (306)
T 3tdw_A           24 VESLGEGFRN----YAILV----------NGDWVFRFPKSQQGADELNKEIQLLPLLVGCVK---VNIPQYVYIGK-R--   83 (306)
T ss_dssp             EEEEEECSSE----EEEEE----------TTTEEEEEESSHHHHHHHHHHHHHHHHHTTTCS---SBCCCEEEEEE-C--
T ss_pred             eeecCCCcce----eEEEE----------CCEEEEEecCCchHHHHHHHHHHHHHHHHhcCC---CCCCCeEeecc-c--
Confidence            3457888888    88887          245889986554445678899999999962111   12455565554 1  


Q ss_pred             CCCCeEEEEEccCCCCCCHHH
Q 005958          171 SGRSLFTLVHGQYHGSFSLRH  191 (667)
Q Consensus       171 ~~~~~~~lVmE~~~~~GsL~~  191 (667)
                       ..+..|+||| +++|..|.+
T Consensus        84 -~~g~~~~v~e-~i~G~~l~~  102 (306)
T 3tdw_A           84 -SDGNPFVGYR-KVQGQILGE  102 (306)
T ss_dssp             -TTSCEEEEEE-CCCSEECHH
T ss_pred             -CCCceEEEEe-ccCCeECch
Confidence             4566789999 999977765

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=98.05  E-value=1.8e-05  Score=85.22  Aligned_cols=77  Identities=13%  Similarity=0.115  Sum_probs=49.8

Q ss_pred             EEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---------hHHHHHHHHHHHHHHhhccCCCCC-cce
Q 005958           90 ILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---------AQRRGRRAIEVLKKLVRRRLMYHS-YSM  159 (667)
Q Consensus        90 i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---------~~~~~~rEi~iL~~L~~~~~~~Hp-nIv  159 (667)
                      -.+.||.|.++    .||++....     .++.|+||......         ......+|.++|+.+...    .| .+.
T Consensus        34 ~~~~lg~G~~n----~vyrv~~~~-----~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~----~~~~vP  100 (397)
T 2olc_A           34 TCQEIGDGNLN----YVFHIYDQE-----HDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEH----VPHLVP  100 (397)
T ss_dssp             EEEECCSSSSE----EEEEEEC---------CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTT----CGGGSC
T ss_pred             EEEECCCCceE----EEEEEEECC-----CCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhh----CCCCcC
Confidence            35689999999    999997664     46889999865321         123457899999998621    13 344


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCC
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSF  187 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~G  187 (667)
                      +++.+.       ....++||| ++++.
T Consensus       101 ~~~~~d-------~~~~~lvmE-~l~g~  120 (397)
T 2olc_A          101 RVFYSD-------TEMAVTVME-DLSHL  120 (397)
T ss_dssp             CEEEEE-------TTTTEEEEC-CCTTS
T ss_pred             eEEEEc-------CCccEEEEE-eCCCc
Confidence            565432       223579999 88764

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=97.80  E-value=2e-05  Score=83.32  Aligned_cols=92  Identities=13%  Similarity=0.014  Sum_probs=57.1

Q ss_pred             EEEeEe-ccCCCCCCCceEEEEEEcCCCC-CCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           89 KILDRV-SIGLSGRADEVVFEAIVKDSNS-PLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        89 ~i~~~L-G~G~fG~~~~~Vy~a~~~~~~~-~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      ...+.| +.|...    .+|+.......+ ...+..+++|+.....     ....+.+|+.+|+.|.....   -.+.++
T Consensus        23 ~~~~~l~~~G~~n----~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~---vpvP~v   95 (357)
T 3ats_A           23 TVESGVDSTGMSS----ETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTD---VPVPRV   95 (357)
T ss_dssp             EEEEEECTTSSEE----EEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCC---SCCCCE
T ss_pred             EEEEECCCCCccc----eEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCC---CCCCcE
Confidence            345778 888888    999887541000 0015689999875533     12456899999999973211   245667


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLR  190 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~  190 (667)
                      +.+..+.  ...+..|+||| +++|..|.
T Consensus        96 ~~~~~~~--~~~g~~~~v~e-~l~G~~l~  121 (357)
T 3ats_A           96 RWIETTG--DVLGTPFFLMD-YVEGVVPP  121 (357)
T ss_dssp             EEEECSS--TTTSSCEEEEE-CCCCBCCC
T ss_pred             EEEccCC--CccCCceEEEE-ecCCCChh
Confidence            7766521  01145789999 99885553

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=97.69  E-value=0.00037  Score=72.54  Aligned_cols=79  Identities=14%  Similarity=0.173  Sum_probs=47.1

Q ss_pred             EeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEE-E--EEEe
Q 005958           91 LDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH-G--YVSS  167 (667)
Q Consensus        91 ~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~-~--~~~~  167 (667)
                      ++.|+.|..+    .||++....       ..+++|+....  ...+..|..+++.|... .+..|.++... +  +.. 
T Consensus        37 ~~~l~gG~~n----~~~~v~~~~-------~~~vlk~~~~~--~~~~~~e~~~l~~L~~~-g~~vp~~~~~~~g~~~~~-  101 (346)
T 2q83_A           37 IDVIQGNQMA----LVWKVHTDS-------GAVCLKRIHRP--EKKALFSIFAQDYLAKK-GMNVPGILPNKKGSLYSK-  101 (346)
T ss_dssp             EEECC----C----EEEEEEETT-------EEEEEEEECSC--HHHHHHHHHHHHHHHHH-TCSSCCBCCCTTSCSCEE-
T ss_pred             eeeccccccC----cEEEEEeCC-------CCEEEEecCCC--HHHHHHHHHHHHHHHHc-CCCCCceeecCCCCEEEE-
Confidence            4566667777    999987642       35999998763  24456788888888643 22345544310 0  111 


Q ss_pred             cccCCCCeEEEEEccCCCCCCH
Q 005958          168 HTTSGRSLFTLVHGQYHGSFSL  189 (667)
Q Consensus       168 ~~~~~~~~~~lVmE~~~~~GsL  189 (667)
                          ..+..++||| |++|..+
T Consensus       102 ----~~~~~~~l~~-~i~G~~~  118 (346)
T 2q83_A          102 ----HGSFLFVVYD-WIEGRPF  118 (346)
T ss_dssp             ----ETTEEEEEEE-CCCCBCC
T ss_pred             ----ECCEEEEEEE-eecCccC
Confidence                3467899999 9998543

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=97.43  E-value=0.00056  Score=74.22  Aligned_cols=32  Identities=19%  Similarity=0.152  Sum_probs=27.4

Q ss_pred             HHCCCcccCCCCCcEEEcCCCCeEEEeeeccccc
Q 005958          248 HSHGLAHTELRLENVHISPVDRHIKVGILGNAAD  281 (667)
Q Consensus       248 Hs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~  281 (667)
                      +...++|+|++|.|||++. ++ ++|+||+.+..
T Consensus       230 ~~~~liHGDl~~~Nil~~~-~~-~~lID~e~a~~  261 (420)
T 2pyw_A          230 RAQALIHGDLHTGSVMVTQ-DS-TQVIDPEFSFY  261 (420)
T ss_dssp             BCCEEECSCCSGGGEEECS-SC-EEECCCTTCEE
T ss_pred             CCCeEEecCCCCCcEEEeC-CC-CEEEeCccccc
Confidence            4568999999999999997 44 99999998853

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=97.27  E-value=0.0027  Score=66.37  Aligned_cols=79  Identities=10%  Similarity=-0.065  Sum_probs=59.4

Q ss_pred             EEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEecc
Q 005958           90 ILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHT  169 (667)
Q Consensus        90 i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~  169 (667)
                      -.+.|+.|...    .+|+...       .+..+++|+.... ....+.+|...|+.|...   ....+.+++.+..   
T Consensus        40 ~~~~l~gG~~n----~~y~v~~-------~~~~~vlK~~~~~-~~~~~~~E~~~L~~L~~~---~~v~VP~vl~~~~---  101 (312)
T 3jr1_A           40 HKEKLYSGEMN----EIWLIND-------EVQTVFVKINERS-YRSMFRAEADQLALLAKT---NSINVPLVYGIGN---  101 (312)
T ss_dssp             EEEEECCSSSS----EEEEEES-------SSCEEEEEEEEGG-GHHHHHHHHHHHHHHHHT---TSSBCCCEEEEEE---
T ss_pred             eeEEeCCccce----eeeEEEE-------CCCeEEEEeCCcc-cHHHHHHHHHHHHHHHhh---CCCCcceEEEEee---
Confidence            45788999989    9999863       3578899987643 345678999999999631   1255777887776   


Q ss_pred             cCCCCeEEEEEccCCCCCCH
Q 005958          170 TSGRSLFTLVHGQYHGSFSL  189 (667)
Q Consensus       170 ~~~~~~~~lVmE~~~~~GsL  189 (667)
                        ..+..++||| ++++..+
T Consensus       102 --~~g~~~lvme-~l~G~~~  118 (312)
T 3jr1_A          102 --SQGHSFLLLE-ALNKSKN  118 (312)
T ss_dssp             --CSSEEEEEEE-CCCCCCC
T ss_pred             --cCCceEEEEE-eccCCCC
Confidence              5678999999 9998654

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=97.23  E-value=0.00054  Score=71.08  Aligned_cols=84  Identities=6%  Similarity=0.026  Sum_probs=49.8

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEE-E--
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH-G--  163 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~-~--  163 (667)
                      ...-.+.|+.|...    .+|++....       ..+++|+.........+..|+.+++.|... .+.-|.++... +  
T Consensus        23 ~~~~~~~i~~G~~n----~~~~v~~~~-------g~~vlk~~~~~~~~~~l~~e~~~l~~L~~~-g~~vP~~~~~~~g~~   90 (322)
T 2ppq_A           23 SLTSYKGIAEGVEN----SNFLLHTTK-------DPLILTLYEKRVEKNDLPFFLGLMQHLAAK-GLSCPLPLPRKDGEL   90 (322)
T ss_dssp             CEEEEEEECC---E----EEEEEEESS-------CCEEEEEECC---CCHHHHHHHHHHHHHHT-TCCCCCBCCBTTCCS
T ss_pred             cceEeeccCCCccc----ceEEEEeCC-------ccEEEEEeCCCCCHHHHHHHHHHHHHHHHC-CCCCCcccCCCCCCE
Confidence            34456778888888    899987542       368899987633344567899999999742 22234433210 0  


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCC
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFS  188 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~Gs  188 (667)
                      +..     ..+..+++|+ +++|..
T Consensus        91 ~~~-----~~g~~~~l~~-~l~G~~  109 (322)
T 2ppq_A           91 LGE-----LSGRPAALIS-FLEGMW  109 (322)
T ss_dssp             CEE-----ETTEEEEEEE-CCCCBC
T ss_pred             EEE-----ECCEEEEEEE-eCCCcC
Confidence            001     2356799999 998844

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=97.04  E-value=0.0015  Score=68.21  Aligned_cols=82  Identities=11%  Similarity=0.005  Sum_probs=44.7

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEecccC
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTS  171 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~~~  171 (667)
                      +.|+.|....   .+|+....      +++.+++|...... ...+..|+.+++.|... .   -.+.+++.+..     
T Consensus        24 ~~l~gg~s~~---~~~r~~~~------~~~~~vlk~~~~~~-~~~~~~e~~~l~~L~~~-g---~~vP~v~~~d~-----   84 (333)
T 3csv_A           24 TPLAGDASSR---RYQRLRSP------TGAKAVLMDWSPEE-GGDTQPFVDLAQYLRNL-D---ISAPEIYAEEH-----   84 (333)
T ss_dssp             CC-----------CCEEEECT------TCCEEEEEECCTTT-TCCSHHHHHHHHHHHHT-T---CBCCCEEEEET-----
T ss_pred             eECCCCCCCc---eEEEEEcC------CCCeEEEEECCCCC-CccccHHHHHHHHHHhC-C---CCCCceeeecC-----
Confidence            4555554441   36666432      25677887654431 13456789999999732 1   12445555532     


Q ss_pred             CCCeEEEEEccCCCCCCHHHHHHh
Q 005958          172 GRSLFTLVHGQYHGSFSLRHWLQQ  195 (667)
Q Consensus       172 ~~~~~~lVmE~~~~~GsL~~~i~~  195 (667)
                      ..+  +++|| ++++..+.+++..
T Consensus        85 ~~g--~ll~e-~l~~~~l~~~l~~  105 (333)
T 3csv_A           85 ARG--LLLIE-DLGDALFTEVINN  105 (333)
T ss_dssp             TTT--EEEEC-CCCSCBHHHHHHH
T ss_pred             CCC--EEEEe-eCCCcchHHHhcC
Confidence            333  68999 9988788777654

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=96.89  E-value=0.014  Score=57.50  Aligned_cols=98  Identities=12%  Similarity=0.097  Sum_probs=63.5

Q ss_pred             CCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHH-CCCcccCCCCCcEEEc
Q 005958          187 FSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHS-HGLAHTELRLENVHIS  265 (667)
Q Consensus       187 GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLHs-~gIvHrDLKPeNILl~  265 (667)
                      -+|.++|+..+        .+|+|++                    +|.++.|.+.+|.-+-. ..-..+=+-|..|++.
T Consensus        33 vSL~eIL~~~~--------~PlsEEq--------------------aWALc~Qc~~~L~~~~~~~~~~~~i~~~~~i~l~   84 (229)
T 2yle_A           33 LSLEEILRLYN--------QPINEEQ--------------------AWAVCYQCCGSLRAAARRRQPRHRVRSAAQIRVW   84 (229)
T ss_dssp             EEHHHHHHHHT--------SCCCHHH--------------------HHHHHHHHHHHHHHHHHTTCCCCCCCSGGGEEEE
T ss_pred             ccHHHHHHHcC--------CCcCHHH--------------------HHHHHHHHHHHHHhhhhcccCCceecCCcceEEe
Confidence            48999998765        4788865                    68899999999877621 2212333457899999


Q ss_pred             CCCCeEEEeeecccccccCCCCCCCCcccccCCCCCCchhhHHHHHHHHHHHHh
Q 005958          266 PVDRHIKVGILGNAADFYEDGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVL  319 (667)
Q Consensus       266 ~~~~~vKL~DFGlA~~~~~~~~~Y~APE~l~~~~~ys~ksDIWSLGviLyemlt  319 (667)
                      . +|.|-+.+ +.+.   .....+.|||..  ....+.+.=|||||+++|.-+-
T Consensus        85 ~-dG~V~f~~-~~s~---~~~~~~~~pe~~--~~~~te~~~IysLG~tLY~ALD  131 (229)
T 2yle_A           85 R-DGAVTLAP-AADD---AGEPPPVAGKLG--YSQCMETEVIESLGIIIYKALD  131 (229)
T ss_dssp             T-TSCEEECC-C---------------CCS--SSSSCHHHHHHHHHHHHHHHHT
T ss_pred             c-CCceeccc-cccc---ccccCCCChhhc--cccchHHHHHHHHHHHHHHHhh
Confidence            8 89888774 2211   223567789944  2345789999999999999885

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=96.87  E-value=0.0022  Score=66.13  Aligned_cols=71  Identities=17%  Similarity=0.099  Sum_probs=44.1

Q ss_pred             EeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhH-HHHHHHHHHHHHHhhccCCCCCcceEEEEEEEecc
Q 005958           91 LDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQ-RRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHT  169 (667)
Q Consensus        91 ~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~-~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~  169 (667)
                      ++.|+.|...    .+|++  .         .+++|+....... -...+|+.+++.+..     +.-..+++...    
T Consensus        23 i~~l~gG~tN----~~~~~--~---------~~vlR~~~~~~~~~~~r~~E~~~l~~l~~-----~g~~P~~~~~~----   78 (301)
T 3dxq_A           23 PLERLGGLTN----LVFRA--G---------DLCLRIPGKGTEEYINRANEAVAAREAAK-----AGVSPEVLHVD----   78 (301)
T ss_dssp             CEEEESCSSE----EEEEE--T---------TEEEEEECC----CCCHHHHHHHHHHHHH-----TTSSCCEEEEC----
T ss_pred             eeEcCCcccc----cccee--e---------eEEEECCCCCccceeCHHHHHHHHHHHHH-----cCCCCceEEEE----
Confidence            6788889888    99998  2         3888987643111 123679999999873     22123555432    


Q ss_pred             cCCCCeEEEEEccCC-CCCCH
Q 005958          170 TSGRSLFTLVHGQYH-GSFSL  189 (667)
Q Consensus       170 ~~~~~~~~lVmE~~~-~~GsL  189 (667)
                         ...-++|+| |+ +|.+|
T Consensus        79 ---~~~~~~v~e-~i~~g~~l   95 (301)
T 3dxq_A           79 ---PATGVMVTR-YIAGAQTM   95 (301)
T ss_dssp             ---TTTCCEEEE-CCTTCEEC
T ss_pred             ---CCCCEEEEe-ecCCCccC
Confidence               223468999 88 66444

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=96.85  E-value=0.0024  Score=69.72  Aligned_cols=80  Identities=18%  Similarity=0.220  Sum_probs=51.5

Q ss_pred             EEeEeccCCCCCCCceEEEEEEcCCCC--CCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEe
Q 005958           90 ILDRVSIGLSGRADEVVFEAIVKDSNS--PLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSS  167 (667)
Q Consensus        90 i~~~LG~G~fG~~~~~Vy~a~~~~~~~--~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~  167 (667)
                      -++.|+.|...    .||++.......  ...+..|++|+.........+.+|..+++.|..     +.-..++++.+. 
T Consensus        77 ~v~~l~gG~tN----~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~~~~~li~E~~~l~~L~~-----~g~~P~l~~~~~-  146 (429)
T 1nw1_A           77 RISRIKGGMSN----MLFLCRLSEVYPPIRNEPNKVLLRVYFNPETESHLVAESVIFTLLSE-----RHLGPKLYGIFS-  146 (429)
T ss_dssp             EEEEECCCTTE----EEEEEEECTTSCCSSSCCSEEEEEEECSCCCHHHHHHHHHHHHHHHH-----TTSSSCEEEEET-
T ss_pred             EEEEeCCCccc----ceEEEEeCCCccccCCCCceEEEEEeCCCCcHHHHHHHHHHHHHHHh-----CCCCCcEEEEeC-
Confidence            35678888888    999998653100  012578999998432221456689999999973     333356676553 


Q ss_pred             cccCCCCeEEEEEccCCCCCC
Q 005958          168 HTTSGRSLFTLVHGQYHGSFS  188 (667)
Q Consensus       168 ~~~~~~~~~~lVmE~~~~~Gs  188 (667)
                          +    .+||| |++|.+
T Consensus       147 ----~----g~v~e-~l~G~~  158 (429)
T 1nw1_A          147 ----G----GRLEE-YIPSRP  158 (429)
T ss_dssp             ----T----EEEEC-CCCEEE
T ss_pred             ----C----CEEEE-EeCCcc
Confidence                2    28999 888633

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=96.68  E-value=0.0053  Score=62.75  Aligned_cols=80  Identities=14%  Similarity=-0.022  Sum_probs=55.4

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--hHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      ....-++.+|.|..+    .||+.+..      +|+.|++|+-....  ....+.+|...|+.|.....+.   +.++++
T Consensus        15 ~~v~~v~~~g~G~~~----~vyrv~l~------DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vp---vP~v~~   81 (288)
T 3f7w_A           15 REVAAVAERGHSHRW----HLYRVELA------DGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSP---VPQVAG   81 (288)
T ss_dssp             CCEEEEEEEEEETTE----EEEEEEET------TSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCC---SCCEEE
T ss_pred             CCeEEEEecCCCCCe----EEEEEEEC------CCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCC---cceEEe
Confidence            456678899999999    99999876      58999999865422  2234678999999996322233   334444


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCC
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFS  188 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~Gs  188 (667)
                      +.         .-++||| ++.++.
T Consensus        82 ~~---------~~~lv~e-~l~~~~   96 (288)
T 3f7w_A           82 WD---------DRTLAME-WVDERP   96 (288)
T ss_dssp             EE---------TTEEEEE-CCCCCC
T ss_pred             cc---------CceEEEE-eecccC
Confidence            32         1278999 887654

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=96.62  E-value=0.0069  Score=62.77  Aligned_cols=80  Identities=9%  Similarity=0.060  Sum_probs=48.7

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-hhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEecc-
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHT-  169 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~-  169 (667)
                      ..|+ |...    .||++...      .|+.+++|+.... .....+..|..+++.|... .+.   +.+++.. .... 
T Consensus        32 ~~l~-g~~n----~~y~v~~~------~g~~~vlK~~~~~~~~~~~~~~E~~~~~~L~~~-g~~---vp~~~~~-~g~~~   95 (328)
T 1zyl_A           32 TPLN-SYEN----RVYQFQDE------DRRRFVVKFYRPERWTADQILEEHQFALQLVND-EVP---VAAPVAF-NGQTL   95 (328)
T ss_dssp             EEEC-CSSS----EEEEECCT------TCCCEEEEEECTTTSCHHHHHHHHHHHHHHHHT-TCS---BCCCCCB-TTBSC
T ss_pred             Eeec-Cccc----ceEEEEcC------CCCEEEEEEcCCCCCCHHHHHHHHHHHHHHHHc-CCe---ecceeec-CCcEE
Confidence            3455 6667    89987654      3667999998743 2345677899999999632 122   2333322 1000 


Q ss_pred             cCCCCeEEEEEccCCCCCC
Q 005958          170 TSGRSLFTLVHGQYHGSFS  188 (667)
Q Consensus       170 ~~~~~~~~lVmE~~~~~Gs  188 (667)
                      ....+..+++|| +++|..
T Consensus        96 ~~~~g~~~~l~~-~i~G~~  113 (328)
T 1zyl_A           96 LNHQGFYFAVFP-SVGGRQ  113 (328)
T ss_dssp             EEETTEEEEEEE-CCCCEE
T ss_pred             EEECCEEEEEEE-ecCCCC
Confidence            002457789999 998743

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=96.59  E-value=0.0075  Score=64.73  Aligned_cols=162  Identities=17%  Similarity=0.151  Sum_probs=82.3

Q ss_pred             eEeccCCCCCCCceEEEEEEcCCC--CCCCCcEEEEEEEcch-hhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEec
Q 005958           92 DRVSIGLSGRADEVVFEAIVKDSN--SPLHNTKVVLRQLISV-QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSH  168 (667)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~--~~~tg~~vAvK~i~~~-~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~  168 (667)
                      +.|..|...    .+|++......  ....++.|++|+.-.. .......+|..+++.|..     +.-..++++.+.  
T Consensus        56 ~~lsGG~TN----~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~~~~~~~~rE~~vl~~L~~-----~gv~P~ll~~~~--  124 (379)
T 3feg_A           56 YPVSGGLSN----LLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAILAE-----RSLGPQLYGVFP--  124 (379)
T ss_dssp             EEC-----C----CEEEEECCTTSCCCSSCCSEEEEEECC---CCHHHHHHHHHHHHHHHH-----TTSSCCEEEEET--
T ss_pred             EEcCCcccc----cEEEEEeCCCccccCCCCCeEEEEECCCccchHHHHHHHHHHHHHHHh-----cCCCCeEEEEcC--
Confidence            466667777    89998864210  0013578999986331 123455799999999973     333456676654  


Q ss_pred             ccCCCCeEEEEEccCCCCCCHHHH-HHhcCCCcccccccCCCHHHHhhcCC-CCCCCCCccccHHHHHHHHHHHHH----
Q 005958          169 TTSGRSLFTLVHGQYHGSFSLRHW-LQQADWLPTLEATLALDEESVRKVGD-DSIGGPAASRQLRLIRLLMRDLLI----  242 (667)
Q Consensus       169 ~~~~~~~~~lVmE~~~~~GsL~~~-i~~~~~~~~l~~~~~l~E~~a~~~~~-~~~~~~~~~~~~~~i~~i~~QIl~----  242 (667)
                         +    .+||| |++|..|..- +..    +.+..  .+- +..+++.. +...+.....-...+..+..++-.    
T Consensus       125 ---~----g~v~e-~i~G~~l~~~~l~~----p~~~~--~ia-~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~  189 (379)
T 3feg_A          125 ---E----GRLEQ-YIPSRPLKTQELRE----PVLSA--AIA-TKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPT  189 (379)
T ss_dssp             ---T----EEEEE-CCSEEECCGGGGGC----HHHHH--HHH-HHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCC
T ss_pred             ---C----ccEEE-EecCccCChhHhCC----HHHHH--HHH-HHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCc
Confidence               3    28999 9988444210 000    00000  000 00011111 011111111012445555544422    


Q ss_pred             ---------------HHHHHH----H----CCCcccCCCCCcEEEcCC---CCeEEEeeeccc
Q 005958          243 ---------------GVNYLH----S----HGLAHTELRLENVHISPV---DRHIKVGILGNA  279 (667)
Q Consensus       243 ---------------aL~yLH----s----~gIvHrDLKPeNILl~~~---~~~vKL~DFGlA  279 (667)
                                     .+..|.    .    ..++|+|+.+.|||++.+   .+.+.|+||..|
T Consensus       190 ~~~~~~~~~~~~l~~~~~~L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a  252 (379)
T 3feg_A          190 GLPEMNLLEMYSLKDEMGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYS  252 (379)
T ss_dssp             SCCSCCHHHHTTHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTC
T ss_pred             ccchhhhhhhHHHHHHHHHHHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccC
Confidence                           233332    2    258999999999999873   268999999877

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=96.34  E-value=0.0066  Score=64.37  Aligned_cols=79  Identities=16%  Similarity=0.164  Sum_probs=45.3

Q ss_pred             EeEeccCCCCCCCceEEEEEEcCC---CCCCCCcEEEEEEEcchhhH-HHHHHHHHHHHHHhhccCCCCCcceEEEEEEE
Q 005958           91 LDRVSIGLSGRADEVVFEAIVKDS---NSPLHNTKVVLRQLISVQAQ-RRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVS  166 (667)
Q Consensus        91 ~~~LG~G~fG~~~~~Vy~a~~~~~---~~~~tg~~vAvK~i~~~~~~-~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~  166 (667)
                      .+.|+.|...    .+|++.....   ..+..+..|++|+....... ....+|..+++.|..     +.-+.++++...
T Consensus        38 ~~~l~~G~~N----~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~~~~~~~E~~~l~~L~~-----~g~~P~~~~~~~  108 (369)
T 3c5i_A           38 VKQILSGLTN----QLFEVGLKEETANNYNSIRTRVLFRIYGKHVDELYNTISEFEVYKTMSK-----YKIAPQLLNTFN  108 (369)
T ss_dssp             EEEC----CC----EEEEEEECHHHHTTCTTSCCEEEEEECCTTGGGTSCHHHHHHHHHHHHH-----TTSSCCEEEEET
T ss_pred             EEEeCCcccc----eEEEEEeCCCCcccccCCCceEEEEecCCCccceecHHHHHHHHHHHHh-----cCCCCceEEecC
Confidence            4677778878    9999986530   00001368899987542211 123689999999973     322446665432


Q ss_pred             ecccCCCCeEEEEEccCCCCCC
Q 005958          167 SHTTSGRSLFTLVHGQYHGSFS  188 (667)
Q Consensus       167 ~~~~~~~~~~~lVmE~~~~~Gs  188 (667)
                             +  ++||| |++|..
T Consensus       109 -------~--~~v~e-~i~G~~  120 (369)
T 3c5i_A          109 -------G--GRIEE-WLYGDP  120 (369)
T ss_dssp             -------T--EEEEE-CCCSEE
T ss_pred             -------C--cEEEE-EecCCc
Confidence                   1  68999 988743

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=96.13  E-value=0.0062  Score=64.10  Aligned_cols=30  Identities=17%  Similarity=0.202  Sum_probs=26.4

Q ss_pred             CCCcccCCCCCcEEEcCCCCeEEEeeecccc
Q 005958          250 HGLAHTELRLENVHISPVDRHIKVGILGNAA  280 (667)
Q Consensus       250 ~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~  280 (667)
                      .+++|+|+.|.||+++. ++.+.|+||+.+.
T Consensus       206 ~~~~HgD~~~~N~l~~~-~~~~~~iD~e~~~  235 (339)
T 3i1a_A          206 YVLCHSDIHAGNVLVGN-EESIYIIDWDEPM  235 (339)
T ss_dssp             CEEECSCCCGGGEEECG-GGCEEECCCSSCE
T ss_pred             ceeEeCCCCcCCEEEeC-CCeEEEEECCCCe
Confidence            46999999999999987 6789999998774

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=95.90  E-value=0.04  Score=60.54  Aligned_cols=76  Identities=8%  Similarity=0.146  Sum_probs=48.4

Q ss_pred             EEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-HHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEec
Q 005958           90 ILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-QRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSH  168 (667)
Q Consensus        90 i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~  168 (667)
                      -++.|+.|...    .+|++....     .+..|++|+...... .-...+|..+++.|.     .+.-..++++.+.  
T Consensus       112 ~i~~lsgG~tN----~~y~v~~~~-----~~~~~vLRi~g~~~~~~idR~~E~~vl~~L~-----~~gl~P~ll~~~~--  175 (458)
T 2qg7_A          112 EFQIINGGITN----ILIKVKDMS-----KQAKYLIRLYGPKTDEIINREREKKISCILY-----NKNIAKKIYVFFT--  175 (458)
T ss_dssp             EEEEECC--CE----EEEEEEETT-----TTEEEEEEEECC-CCSCSCHHHHHHHHHHHT-----TSSSBCCEEEEET--
T ss_pred             EEEEcCCCeEe----EEEEEEECC-----CCceEEEEECCCChhhhcCHHHHHHHHHHHH-----hcCCCCCEEEEeC--
Confidence            35678878888    999998753     357899998753211 011258999999997     2333456777653  


Q ss_pred             ccCCCCeEEEEEccCCCCCCH
Q 005958          169 TTSGRSLFTLVHGQYHGSFSL  189 (667)
Q Consensus       169 ~~~~~~~~~lVmE~~~~~GsL  189 (667)
                         +    .+||| |++|.+|
T Consensus       176 ---~----G~v~e-~I~G~~l  188 (458)
T 2qg7_A          176 ---N----GRIEE-FMDGYAL  188 (458)
T ss_dssp             ---T----EEEEE-CCCSEEC
T ss_pred             ---C----eEEEE-eeCCccC
Confidence               2    24999 9887444

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=94.58  E-value=0.12  Score=56.29  Aligned_cols=80  Identities=9%  Similarity=0.155  Sum_probs=49.6

Q ss_pred             EEeEeccCCCCCCCceEEEEEEcCCCC--CCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEE
Q 005958           90 ILDRVSIGLSGRADEVVFEAIVKDSNS--PLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVS  166 (667)
Q Consensus        90 i~~~LG~G~fG~~~~~Vy~a~~~~~~~--~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~  166 (667)
                      -++.|..|...    .+|++.......  ...++.|++|+..... ..-...+|..+++.|..     +.-..++++.+.
T Consensus        74 ~v~~lsGG~TN----~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t~~~idR~~E~~~l~~L~~-----~gi~P~l~~~~~  144 (424)
T 3mes_A           74 EVKQIFSGLTN----QLFVVSIVNESMSLSLKHPRILFRIYGKHVGKFYDSKVELDVFRYLSN-----INIAPNIIADFP  144 (424)
T ss_dssp             EEEEECCCSSS----EEEEEEECCC-----CCCSEEEEEECCCCC-CCCCHHHHHHHHHHHHH-----TTSSCCEEEEET
T ss_pred             EEEEcCCCccc----ceEEEEeCCCcccccCCCCeEEEEECCCCcchhcCHHHHHHHHHHHHh-----cCCCCCEEEEcC
Confidence            34667667777    999998763110  0125889999864321 11123689999999973     333456665432


Q ss_pred             ecccCCCCeEEEEEccCCCCCC
Q 005958          167 SHTTSGRSLFTLVHGQYHGSFS  188 (667)
Q Consensus       167 ~~~~~~~~~~~lVmE~~~~~Gs  188 (667)
                             +  ++||| |++|..
T Consensus       145 -------~--~~I~e-fI~G~~  156 (424)
T 3mes_A          145 -------E--GRIEE-FIDGEP  156 (424)
T ss_dssp             -------T--EEEEE-CCCSEE
T ss_pred             -------C--CEEEE-EeCCcc
Confidence                   2  68999 999854

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=91.51  E-value=1.1  Score=47.78  Aligned_cols=29  Identities=7%  Similarity=0.127  Sum_probs=24.0

Q ss_pred             CcccCCCCCcEEEcC-----CCCeEEEeeecccc
Q 005958          252 LAHTELRLENVHISP-----VDRHIKVGILGNAA  280 (667)
Q Consensus       252 IvHrDLKPeNILl~~-----~~~~vKL~DFGlA~  280 (667)
                      ++|+|+.+.|||+..     .++.+.++||-.|.
T Consensus       246 fcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~  279 (401)
T 3g15_A          246 FCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS  279 (401)
T ss_dssp             EECSCCCGGGEEEETTGGGCSSCCEEECCCTTCE
T ss_pred             eEEecCCCCeEEEecCcccCcCCeEEEechHhcc
Confidence            689999999999942     25789999998773

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	667
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	7e-16
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	4e-14
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	2e-13
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	1e-12
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	2e-12
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	8e-12
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	1e-11
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	2e-11
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	4e-11
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	5e-11
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	2e-10
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	2e-10
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	2e-10
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	2e-10
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	3e-10
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	4e-10
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	4e-10
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	5e-10
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	6e-10
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	6e-10
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	6e-10
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	7e-10
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	1e-09
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	1e-09
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	5e-09
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	6e-09
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	6e-09
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	8e-09
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	1e-08
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	3e-08
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	5e-08
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	1e-07
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	1e-07
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	2e-07
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	7e-07
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	8e-07
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	1e-06
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	2e-06
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	6e-06
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	1e-05
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	6e-05
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	1e-04
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	2e-04
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	2e-04
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	0.001
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	0.003

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (188), Expect = 7e-16
 Identities = 60/326 (18%), Positives = 105/326 (32%), Gaps = 49/326 (15%)

Query: 87  DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKK 146
            ++ +  +  G  G     VF+A    +       K V  Q           R + VL+ 
Sbjct: 8   QYECVAEIGEGAYG----KVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRH 63

Query: 147 LVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATL 206
           L       H   +++    +   T   +  TLV        +          +P      
Sbjct: 64  LETFE---HPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVP------ 114

Query: 207 ALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISP 266
                                     I+ +M  LL G+++LHSH + H +L+ +N+ ++ 
Sbjct: 115 -----------------------TETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTS 151

Query: 267 VDRHIKVGILGNAADFYEDGPNNS-------SPDSNMDRRQMMIAFDMRCVGFMMAKMVL 319
               IK+   G A  +       S            + +       D+  VG + A+M  
Sbjct: 152 -SGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFR 210

Query: 320 RELM-----DPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGW 374
           R+ +     D     K    +    +    R+  L     +S S     + +      G 
Sbjct: 211 RKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGK 270

Query: 375 NLLSLLLATKPSKRISCLDALRHPFL 400
           +LL   L   P+KRIS   AL HP+ 
Sbjct: 271 DLLLKCLTFNPAKRISAYSALSHPYF 296

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (175), Expect = 4e-14
 Identities = 44/329 (13%), Positives = 105/329 (31%), Gaps = 76/329 (23%)

Query: 85  MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVL 144
           + D+K+  +V +GL       V +   K +       K  L+ L   Q   + RR +E+ 
Sbjct: 10  IDDYKVTSQV-LGLGING--KVLQIFNKRTQ-----EKFALKML---QDCPKARREVELH 58

Query: 145 KKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEA 204
            +  +       + +++     +     + L  +V  +      L   +Q          
Sbjct: 59  WRASQ-----CPHIVRIVDVYENLYAGRKCLL-IVM-ECLDGGELFSRIQDRGDQA---- 107

Query: 205 TLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHI 264
                E    ++                    M+ +   + YLHS  +AH +++ EN+  
Sbjct: 108 ---FTEREASEI--------------------MKSIGEAIQYLHSINIAHRDVKPENLLY 144

Query: 265 SPVDR--HIKVGILGNAADFYEDGPNNSSPDSNMDRRQMMI-------AFDMRCVGFMMA 315
           +       +K+   G A +        +   +       ++       + DM  +G +M 
Sbjct: 145 TSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMY 204

Query: 316 KMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWG---- 371
            ++                         +   +   +          ++  +  W     
Sbjct: 205 ILLCGYPPFY------------SNHGLAISPGMKTRIRMGQ------YEFPNPEWSEVSE 246

Query: 372 AGWNLLSLLLATKPSKRISCLDALRHPFL 400
               L+  LL T+P++R++  + + HP++
Sbjct: 247 EVKMLIRNLLKTEPTQRMTITEFMNHPWI 275

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (170), Expect = 2e-13
 Identities = 56/346 (16%), Positives = 119/346 (34%), Gaps = 57/346 (16%)

Query: 105 VVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGY 164
           VV++A + DS        V +++++  Q +R   R +++++KL       H   +++  +
Sbjct: 35  VVYQAKLCDSG-----ELVAIKKVL--QDKRFKNRELQIMRKL------DHCNIVRLRYF 81

Query: 165 VSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGP 224
             S       ++  +   Y      R     +    TL                      
Sbjct: 82  FYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLP--------------------- 120

Query: 225 AASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE 284
                +  ++L M  L   + Y+HS G+ H +++ +N+ + P    +K+   G+A     
Sbjct: 121 -----VIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR 175

Query: 285 DGPNNS--------SPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDP------LIFTK 330
             PN S        +P+          + D+   G ++A+++L + + P       +   
Sbjct: 176 GEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEI 235

Query: 331 FKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGA-GWNLLSLLLATKPSKRI 389
            K   T   +                   +   ++           L S LL   P+ R+
Sbjct: 236 IKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARL 295

Query: 390 SCLDALRHPFLCGPRWRVDPSIDMIRWGLGSSAVRITEEYIYRQPQ 435
           + L+A  H F    R   DP++ +       +    T + +   P 
Sbjct: 296 TPLEACAHSFFDELR---DPNVKLPNGRDTPALFNFTTQELSSNPP 338

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (164), Expect = 1e-12
 Identities = 55/339 (16%), Positives = 112/339 (33%), Gaps = 58/339 (17%)

Query: 88  FKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKL 147
           ++ L  V  G  G     V  A+   + + +   K + R   S    +R  R + +LK +
Sbjct: 20  YRDLQPVGSGAYG----AVCSAVDGRTGAKVA-IKKLYRPFQSELFAKRAYRELRLLKHM 74

Query: 148 VRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLA 207
                  H   + +    +   T        +   + G+   +    +            
Sbjct: 75  ------RHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEK----------- 117

Query: 208 LDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPV 267
           L E+ ++                     L+  +L G+ Y+H+ G+ H +L+  N+ ++  
Sbjct: 118 LGEDRIQF--------------------LVYQMLKGLRYIHAAGIIHRDLKPGNLAVNE- 156

Query: 268 DRHIKVGILGNAADFYED------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRE 321
           D  +K+   G A     +           +P+  ++  +     D+  VG +MA+M+  +
Sbjct: 157 DCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGK 216

Query: 322 L---MDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGF------QILDRNWGA 372
                   +    +     G  P+   + L     +N   G           IL      
Sbjct: 217 TLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPL 276

Query: 373 GWNLLSLLLATKPSKRISCLDALRHPFLCGPRWRVDPSI 411
             NLL  +L     +R++  +AL HP+        D   
Sbjct: 277 AVNLLEKMLVLDAEQRVTAGEALAHPYFESLHDTEDEPQ 315

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 66.8 bits (162), Expect = 2e-12
 Identities = 61/354 (17%), Positives = 123/354 (34%), Gaps = 80/354 (22%)

Query: 79  HVIRF-NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRG 137
           HV+ + N  D++++ ++  G        VFEAI   +N      KVV++  +    +++ 
Sbjct: 27  HVVEWGNQDDYQLVRKLGRGKYS----EVFEAINITNN-----EKVVVKI-LKPVKKKKI 76

Query: 138 RRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQAD 197
           +R I++L+      L      + +   V    +   +L      ++  +   +   Q   
Sbjct: 77  KREIKILE-----NLRGGPNIITLADIVKDPVSRTPALVF----EHVNNTDFKQLYQT-- 125

Query: 198 WLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTEL 257
                     L +  +R                      M ++L  ++Y HS G+ H ++
Sbjct: 126 ----------LTDYDIRFY--------------------MYEILKALDYCHSMGIMHRDV 155

Query: 258 RLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRC 309
           +  NV I    R +++   G A  ++                P+  +D +    + DM  
Sbjct: 156 KPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWS 215

Query: 310 VGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGF-QILDR 368
           +G M+A M+ R+   P             I      E L   +++ +   +  F  IL R
Sbjct: 216 LGCMLASMIFRKE--PFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGR 273

Query: 369 NWGAGW-----------------NLLSLLLATKPSKRISCLDALRHPFLCGPRW 405
           +    W                 + L  LL      R++  +A+ HP+      
Sbjct: 274 HSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVK 327

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (155), Expect = 8e-12
 Identities = 50/327 (15%), Positives = 104/327 (31%), Gaps = 74/327 (22%)

Query: 82  RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAI 141
           ++ + DF+I   +  G  G     V+ A  K S   L    +   QL     + + RR +
Sbjct: 2   QWALEDFEIGRPLGKGKFG----NVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV 57

Query: 142 EVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPT 201
           E+   L       H   ++++GY    T        L+        ++   LQ+      
Sbjct: 58  EIQSHL------RHPNILRLYGYFHDATR-----VYLILEYAPLG-TVYRELQKLSKFD- 104

Query: 202 LEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLEN 261
                                        +     + +L   ++Y HS  + H +++ EN
Sbjct: 105 ----------------------------EQRTATYITELANALSYCHSKRVIHRDIKPEN 136

Query: 262 VHISPVDRHIKVGILGNAADFYED------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMA 315
           + +      +K+   G +            G  +  P   ++ R      D+  +G +  
Sbjct: 137 LLLGS-AGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCY 195

Query: 316 KMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWN 375
           + ++ +                  + +  +E   ++           F   D       +
Sbjct: 196 EFLVGKPP---------------FEANTYQETYKRISRVE-------FTFPDFVTEGARD 233

Query: 376 LLSLLLATKPSKRISCLDALRHPFLCG 402
           L+S LL   PS+R    + L HP++  
Sbjct: 234 LISRLLKHNPSQRPMLREVLEHPWITA 260

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (155), Expect = 1e-11
 Identities = 44/328 (13%), Positives = 94/328 (28%), Gaps = 56/328 (17%)

Query: 87  DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKK 146
            ++ L  V  G  G     V  A    +   +   K + R   S+   +R  R + +LK 
Sbjct: 19  RYQNLSPVGSGAYG----SVCAAFDTKTGLRV-AVKKLSRPFQSIIHAKRTYRELRLLKH 73

Query: 147 LVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATL 206
           +       H   + +    +   +        +     G+        Q           
Sbjct: 74  M------KHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDH----- 122

Query: 207 ALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISP 266
                                     ++ L+  +L G+ Y+HS  + H +L+  N+ ++ 
Sbjct: 123 --------------------------VQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNE 156

Query: 267 VDRHIKVG-----ILGNAADFYEDGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRE 321
                 +         +    Y       +P+  ++        D+  VG +MA+++   
Sbjct: 157 DCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 216

Query: 322 LMDP---------LIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGA 372
            + P         LI     +   + +           + +           +       
Sbjct: 217 TLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPL 276

Query: 373 GWNLLSLLLATKPSKRISCLDALRHPFL 400
             +LL  +L     KRI+   AL H + 
Sbjct: 277 AVDLLEKMLVLDSDKRITAAQALAHAYF 304

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (152), Expect = 2e-11
 Identities = 69/332 (20%), Positives = 118/332 (35%), Gaps = 62/332 (18%)

Query: 85  MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVL 144
           M +F+ ++++  G  G    VV++A  K +   +   K +     +        R I +L
Sbjct: 1   MENFQKVEKIGEGTYG----VVYKARNKLTGEVV-ALKKIRLDTETEGVPSTAIREISLL 55

Query: 145 KKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEA 204
           K+L       H   +++   +  HT +   L      Q    F     L           
Sbjct: 56  KEL------NHPNIVKLLDVI--HTENKLYLVFEFLHQDLKKFMDASALTGIPL------ 101

Query: 205 TLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHI 264
                                      LI+  +  LL G+ + HSH + H +L+ +N+ I
Sbjct: 102 --------------------------PLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLI 135

Query: 265 SPVDRHIKVGILGNAADFYEDG---------PNNSSPDSNMDRRQMMIAFDMRCVGFMMA 315
           +  +  IK+   G A  F                 +P+  +  +    A D+  +G + A
Sbjct: 136 NT-EGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFA 194

Query: 316 KMVLRELM---DPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWG- 371
           +MV R  +   D  I   F+ F T G     +   +  + +   S      Q   +    
Sbjct: 195 EMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPP 254

Query: 372 ---AGWNLLSLLLATKPSKRISCLDALRHPFL 400
               G +LLS +L   P+KRIS   AL HPF 
Sbjct: 255 LDEDGRSLLSQMLHYDPNKRISAKAALAHPFF 286

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (150), Expect = 4e-11
 Identities = 52/341 (15%), Positives = 100/341 (29%), Gaps = 66/341 (19%)

Query: 85  MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVL 144
           +  ++ L ++  G  G     VF+A  + +   +   K VL +           R I++L
Sbjct: 9   VSKYEKLAKIGQGTFG----EVFKARHRKTGQKVA-LKKVLMENEKEGFPITALREIKIL 63

Query: 145 KKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHG--QYHGSFSLRHWLQQADWLPTL 202
           + L       H   + +     +  +        ++    +                   
Sbjct: 64  QLL------KHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLS 117

Query: 203 EATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENV 262
           E                             I+ +M+ LL G+ Y+H + + H +++  NV
Sbjct: 118 E-----------------------------IKRVMQMLLNGLYYIHRNKILHRDMKAANV 148

Query: 263 HISPVDRHIKVGILGNAADFYEDG-------------PNNSSPDSNMDRRQMMIAFDMRC 309
            I+  D  +K+   G A  F                      P+  +  R      D+  
Sbjct: 149 LITR-DGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWG 207

Query: 310 VGFMMAKMVLRELMDP-----LIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQ 364
            G +MA+M  R  +                               ++  +         +
Sbjct: 208 AGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRK 267

Query: 365 ILDRNWGAGW-----NLLSLLLATKPSKRISCLDALRHPFL 400
           + DR           +L+  LL   P++RI   DAL H F 
Sbjct: 268 VKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFF 308

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (151), Expect = 5e-11
 Identities = 54/343 (15%), Positives = 103/343 (30%), Gaps = 73/343 (21%)

Query: 83  FNMGD-FKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQ---RRGR 138
           F++G  +  L  +  G  G    +V  A    +       +V ++++   + Q   +R  
Sbjct: 4   FDVGPRYTNLSYIGEGAYG----MVCSAYDNVNK-----VRVAIKKISPFEHQTYCQRTL 54

Query: 139 RAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADW 198
           R I++L +        H   + ++  + + T        LV              Q    
Sbjct: 55  REIKILLRF------RHENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQHLSN 108

Query: 199 LPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELR 258
                                             I   +  +L G+ Y+HS  + H +L+
Sbjct: 109 --------------------------------DHICYFLYQILRGLKYIHSANVLHRDLK 136

Query: 259 LENVHISPVDRHIKVGILGNAADFYEDGPNNSSPDSNMDRRQMM------------IAFD 306
             N+ ++     +K+   G A     D  +       +  R                + D
Sbjct: 137 PSNLLLNT-TCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 195

Query: 307 MRCVGFMMAKMVLRELM-----DPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNT 361
           +  VG ++A+M+    +                L             L+  N   S  + 
Sbjct: 196 IWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHK 255

Query: 362 GFQILDRNWG----AGWNLLSLLLATKPSKRISCLDALRHPFL 400
                +R +        +LL  +L   P KRI    AL HP+L
Sbjct: 256 NKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYL 298

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (144), Expect = 2e-10
 Identities = 37/197 (18%), Positives = 63/197 (31%), Gaps = 16/197 (8%)

Query: 229 QLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--- 285
               I+  M   L G+ YLH H + H +L+  N+ +   +  +K+   G A  F      
Sbjct: 98  TPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDE-NGVLKLADFGLAKSFGSPNRA 156

Query: 286 ------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELM-----DPLIFTKFKSF 334
                      +P+     R   +  DM  VG ++A+++LR        D    T+    
Sbjct: 157 YTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFET 216

Query: 335 LTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWG-AGWNLLSLLLATKPSKRISCLD 393
           L    +        L       S        +    G    +L+  L    P  RI+   
Sbjct: 217 LGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQ 276

Query: 394 ALRHPFLCGPRWRVDPS 410
           AL+  +           
Sbjct: 277 ALKMKYFSNRPGPTPGC 293

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (144), Expect = 2e-10
 Identities = 61/333 (18%), Positives = 108/333 (32%), Gaps = 64/333 (19%)

Query: 85  MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVL 144
           M  ++ L+++  G  G     VF+A  ++++  +   K V              R I +L
Sbjct: 1   MQKYEKLEKIGEGTYG----TVFKAKNRETHEIV-ALKRVRLDDDDEGVPSSALREICLL 55

Query: 145 KKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEA 204
           K+L       H   +++H  + S         TLV                 D  P    
Sbjct: 56  KEL------KHKNIVRLHDVLHSDKK-----LTLVFEFCDQDLKKYFDSCNGDLDP---- 100

Query: 205 TLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHI 264
                                      +++  +  LL G+ + HS  + H +L+ +N+ I
Sbjct: 101 --------------------------EIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLI 134

Query: 265 SPVDRHIKVGILGNAADFYEDGPNNS---------SPDSNMDRRQMMIAFDMRCVGFMMA 315
           +  +  +K+   G A  F       S          PD     +    + DM   G + A
Sbjct: 135 NR-NGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFA 193

Query: 316 KMVLREL-------MDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDR 368
           ++            +D  +   F+   T   +       L            T    +  
Sbjct: 194 ELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVP 253

Query: 369 NWGA-GWNLLSLLLATKPSKRISCLDALRHPFL 400
              A G +LL  LL   P +RIS  +AL+HP+ 
Sbjct: 254 KLNATGRDLLQNLLKCNPVQRISAEEALQHPYF 286

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.0 bits (145), Expect = 2e-10
 Identities = 41/209 (19%), Positives = 73/209 (34%), Gaps = 33/209 (15%)

Query: 233 IRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-----P 287
           I  +    L G+ YLHSH + H +++  N+ +S     +K+G  G+A+           P
Sbjct: 117 IAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSE-PGLVKLGDFGSASIMAPANSFVGTP 175

Query: 288 NNSSPDS--NMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLR 345
              +P+    MD  Q     D+  +G    ++  R+                        
Sbjct: 176 YWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLF---------------NMNAM 220

Query: 346 EFLLQVLNRNSSSGNTGFQILDRNWGAGW-NLLSLLLATKPSKRISCLDALRHPFLCGPR 404
             L  +    S +      +   +W   + N +   L   P  R +    L+H F+   R
Sbjct: 221 SALYHIAQNESPA------LQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLRER 274

Query: 405 WRVDPSIDMIRWGLGSSAVRITEEYIYRQ 433
               P++ M        AVR  +   YR+
Sbjct: 275 ---PPTVIMDLIQRTKDAVRELDNLQYRK 300

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (143), Expect = 2e-10
 Identities = 45/324 (13%), Positives = 99/324 (30%), Gaps = 78/324 (24%)

Query: 86  GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLK 145
             +++   +  G  G     V+  I    N P+   K V +  IS   +      + +  
Sbjct: 4   SQYQVGPLLGSGGFG----SVYSGIRVSDNLPVA-IKHVEKDRISDWGELPNGTRVPMEV 58

Query: 146 KLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEAT 205
            L+++     S  +++  +           F L+  +      L  ++ +   L      
Sbjct: 59  VLLKKVSSGFSGVIRLLDWFER-----PDSFVLILERPEPVQDLFDFITERGALQ----- 108

Query: 206 LALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHIS 265
                                     L R     +L  V + H+ G+ H +++ EN+ I 
Sbjct: 109 ------------------------EELARSFFWQVLEAVRHCHNCGVLHRDIKDENILID 144

Query: 266 PVDRHIKVGILGNAADFYEDGPNN-------SSPDSNMDRRQMMIAFDMRCVGFMMAKMV 318
                +K+   G+ A   +    +       S P+     R    +  +  +G ++  MV
Sbjct: 145 LNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMV 204

Query: 319 LREL--MDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNL 376
             ++         + + F  + +   C                               +L
Sbjct: 205 CGDIPFEHDEEIIRGQVFFRQRVSSECQ------------------------------HL 234

Query: 377 LSLLLATKPSKRISCLDALRHPFL 400
           +   LA +PS R +  +   HP++
Sbjct: 235 IRWCLALRPSDRPTFEEIQNHPWM 258

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 60.1 bits (145), Expect = 3e-10
 Identities = 38/194 (19%), Positives = 67/194 (34%), Gaps = 28/194 (14%)

Query: 231 RLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDR-HIKVGILGNAADFYEDG--- 286
             +   MR    G+ ++H H + H +++ EN+         +K+   G A     D    
Sbjct: 127 AEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVK 186

Query: 287 -----PNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDP 341
                   ++P+  +DR  +    DM  +G +   ++                   G D 
Sbjct: 187 VTTATAEFAAPEI-VDREPVGFYTDMWAIGVLGYVLLSGLSPFA------------GEDD 233

Query: 342 SCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLC 401
               E L  V   +       F  +        + +  LL  +P KR++  DAL HP+L 
Sbjct: 234 ---LETLQNVKRCDWEFDEDAFSSVSPE---AKDFIKNLLQKEPRKRLTVHDALEHPWLK 287

Query: 402 GPRWRVDPSIDMIR 415
           G    +   I   R
Sbjct: 288 GDHSNLTSRIPSSR 301

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (142), Expect = 4e-10
 Identities = 32/179 (17%), Positives = 58/179 (32%), Gaps = 31/179 (17%)

Query: 233 IRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNS-- 290
            +     L+ GV YLH  G+ H +++ EN+ +     ++K+   G A  F  +       
Sbjct: 105 AQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDE-RDNLKISDFGLATVFRYNNRERLLN 163

Query: 291 ---------SPDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDP 341
                    +P+    R       D+   G ++  M+  EL                  P
Sbjct: 164 KMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWD--------------QP 209

Query: 342 SCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFL 400
           S   +       + +           +   A   LL  +L   PS RI+  D  +  + 
Sbjct: 210 SDSCQEYSDWKEKKTY-----LNPWKKIDSAPLALLHKILVENPSARITIPDIKKDRWY 263

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 58.9 bits (142), Expect = 4e-10
 Identities = 58/329 (17%), Positives = 100/329 (30%), Gaps = 74/329 (22%)

Query: 87  DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKK 146
           +++  + +  G+S     VV   I K +       K++        +    +   E   K
Sbjct: 4   NYEPKEILGRGVSS----VVRRCIHKPTCKEYA-VKIIDVTGGGSFSAEEVQELREATLK 58

Query: 147 LVR--RRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEA 204
            V   R++  H   +Q+     ++T      F LV         L  +L +   L   E 
Sbjct: 59  EVDILRKVSGHPNIIQLKDTYETNTF-----FFLVF-DLMKKGELFDYLTEKVTLSEKET 112

Query: 205 TLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHI 264
                                        R +MR LL  +  LH   + H +L+ EN+ +
Sbjct: 113 -----------------------------RKIMRALLEVICALHKLNIVHRDLKPENILL 143

Query: 265 SPVDRHIKVGILGNAADFYEDGPNNS-------------SPDSNMDRRQMMIAFDMRCVG 311
              D +IK+   G +                            N +        DM   G
Sbjct: 144 DD-DMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTG 202

Query: 312 FMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWG 371
            +M  ++                      P   R+ +L +    S +   G    D    
Sbjct: 203 VIMYTLLAGSP------------------PFWHRKQMLMLRMIMSGNYQFGSPEWDDYSD 244

Query: 372 AGWNLLSLLLATKPSKRISCLDALRHPFL 400
              +L+S  L  +P KR +  +AL HPF 
Sbjct: 245 TVKDLVSRFLVVQPQKRYTAEEALAHPFF 273

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 59.3 bits (143), Expect = 5e-10
 Identities = 46/338 (13%), Positives = 95/338 (28%), Gaps = 81/338 (23%)

Query: 85  MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLI--SVQAQRRGRRAIE 142
           +  + I + +  G  G    VV     + +           + ++      +   R+ I+
Sbjct: 25  LDHYDIHEELGTGAFG----VVHRVTERATG-----NNFAAKFVMTPHESDKETVRKEIQ 75

Query: 143 VLKKLVRRRL--MYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLP 200
            +  L    L  ++ ++       +     SG  LF  V  + H   S            
Sbjct: 76  TMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADE-HNKMSEDE--------- 125

Query: 201 TLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLE 260
                                               MR +  G+ ++H +   H +L+ E
Sbjct: 126 --------------------------------AVEYMRQVCKGLCHMHENNYVHLDLKPE 153

Query: 261 NVHISP-VDRHIKVGILGNAADFYEDGPNNSSPDSNMDRRQMMI-------AFDMRCVGF 312
           N+  +      +K+   G  A          +  +       +          DM  VG 
Sbjct: 154 NIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGV 213

Query: 313 MMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGA 372
           +   ++                           E L  V + + +  ++ F  +  +   
Sbjct: 214 LSYILLSGLSP---------------FGGENDDETLRNVKSCDWNMDDSAFSGISED--- 255

Query: 373 GWNLLSLLLATKPSKRISCLDALRHPFLCGPRWRVDPS 410
           G + +  LL   P+ R++   AL HP+L         S
Sbjct: 256 GKDFIRKLLLADPNTRMTIHQALEHPWLTPGNAPGRDS 293

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (141), Expect = 6e-10
 Identities = 32/179 (17%), Positives = 62/179 (34%), Gaps = 25/179 (13%)

Query: 231 RLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNS 290
             I+++ +  L  +NYLH + + H +L+  N+  +  D  IK+   G +A          
Sbjct: 110 SQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTL-DGDIKLADFGVSAKNTRTIQRRD 168

Query: 291 S---------PDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDP 341
           S         P+  M        +D +   + +  + L E+                ++P
Sbjct: 169 SFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLG-ITLIEMA-----EIEPPH--HELNP 220

Query: 342 SCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFL 400
                  ++VL + + S         R      + L   L      R +    L+HPF+
Sbjct: 221 -------MRVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQHPFV 272

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (141), Expect = 6e-10
 Identities = 33/178 (18%), Positives = 66/178 (37%), Gaps = 28/178 (15%)

Query: 231 RLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNS 290
             I  + R+ L  + +LHS+ + H +++ +N+ +   D  +K+   G  A    +    S
Sbjct: 116 GQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGM-DGSVKLTDFGFCAQITPEQSKRS 174

Query: 291 S--------PDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPS 342
           +            + R+      D+  +G M  +M+  E                  +P 
Sbjct: 175 TMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEP------------PYLNENP- 221

Query: 343 CLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFL 400
                 L+ L   +++G    Q  ++      + L+  L     KR S  + L+H FL
Sbjct: 222 ------LRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQFL 273

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.0 bits (142), Expect = 6e-10
 Identities = 45/370 (12%), Positives = 104/370 (28%), Gaps = 81/370 (21%)

Query: 50  QCSSSRKVVSEESVQNEASVSVDDESDSGHVIRFN---MGDFKILDRVSIGLSGRADEVV 106
             ++++K   +ESV+   + + +D          N   +  F  +  +  G  G     V
Sbjct: 2   NAAAAKKGSEQESVKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFG----RV 57

Query: 107 FEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVS 166
                K+S +      +  ++++ ++          +L+ +         + +++     
Sbjct: 58  MLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAV------NFPFLVKLEFSFK 111

Query: 167 SHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAA 226
            ++     +  +  G+      +   L++                               
Sbjct: 112 DNSNLYMVMEYVAGGE------MFSHLRRIGRFS-------------------------- 139

Query: 227 SRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG 286
                  R     +++   YLHS  L + +L+ EN+ I     +I+V   G A       
Sbjct: 140 ---EPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQ-QGYIQVTDFGFAKRVKGRT 195

Query: 287 PNNSSPDSNMDRRQMM-----IAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDP 341
                    +    ++      A D   +G ++ +M                       P
Sbjct: 196 WTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYP------------PFFADQP 243

Query: 342 SCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCL-----DALR 396
             + E +           +   +          +LL  LL    +KR   L     D   
Sbjct: 244 IQIYEKI----------VSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN 293

Query: 397 HPFLCGPRWR 406
           H +     W 
Sbjct: 294 HKWFATTDWI 303

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.0 bits (142), Expect = 7e-10
 Identities = 45/333 (13%), Positives = 95/333 (28%), Gaps = 74/333 (22%)

Query: 85  MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVL 144
           M DF +   +  G  G     V+     D+        +  +++   Q +        +L
Sbjct: 3   MNDFSVHRIIGRGGFG----EVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIML 58

Query: 145 KKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEA 204
             +         + + +      HT    S              L + L Q         
Sbjct: 59  SLV---STGDCPFIVCMSYAF--HTPDKLSFIL----DLMNGGDLHYHLSQHGV------ 103

Query: 205 TLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHI 264
                                       +R    ++++G+ ++H+  + + +L+  N+ +
Sbjct: 104 -----------------------FSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILL 140

Query: 265 SPVDRHIKVGILGNAADFYEDGPNNSSPDSNMDRRQMMI-------AFDMRCVGFMMAKM 317
                H+++  LG A DF +  P+ S         +++        + D   +G M+ K+
Sbjct: 141 DEHG-HVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKL 199

Query: 318 VLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLL 377
           +                           E     L           ++ D       +LL
Sbjct: 200 LRGHSPFR------------QHKTKDKHEIDRMTLTMA-------VELPDSFSPELRSLL 240

Query: 378 SLLLATKPSKRISCL-----DALRHPFLCGPRW 405
             LL    ++R+ CL     +    PF     W
Sbjct: 241 EGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDW 273

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (139), Expect = 1e-09
 Identities = 51/343 (14%), Positives = 102/343 (29%), Gaps = 71/343 (20%)

Query: 85  MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVL 144
           +  ++ L  +  G  G    +V  A     +  +   K + R   +    +R  R + ++
Sbjct: 16  LKRYQNLKPIGSGAQG----IVCAAYDAVLDRNVA-IKKLSRPFQNQTHAKRAYRELVLM 70

Query: 145 KKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEA 204
           K +       H   + +    +   T        +  +   +   +    + D       
Sbjct: 71  KCV------NHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDH------ 118

Query: 205 TLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHI 264
                                       +  L+  +L G+ +LHS G+ H +L+  N+ +
Sbjct: 119 --------------------------ERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVV 152

Query: 265 SPVDRHIKVGILGNAADFYED-------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKM 317
              D  +K+   G A                       +         D+  VG +M +M
Sbjct: 153 KS-DCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEM 211

Query: 318 VLREL----------------MDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNT 361
           V  ++                       +F   L   +            L       ++
Sbjct: 212 VRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDS 271

Query: 362 GFQILDRNWG----AGWNLLSLLLATKPSKRISCLDALRHPFL 400
            F     +         +LLS +L   P+KRIS  DAL+HP++
Sbjct: 272 LFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYI 314

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (139), Expect = 1e-09
 Identities = 31/189 (16%), Positives = 64/189 (33%), Gaps = 26/189 (13%)

Query: 231 RLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDR-HIKVGILGNAADFYEDGPNN 289
           R I   +  +   + +LHSH + H ++R EN+         IK+   G A          
Sbjct: 102 REIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFR 161

Query: 290 SSPDSNMDRRQMMI-------AFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPS 342
               +       +        A DM  +G ++  ++      P                 
Sbjct: 162 LLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGIN--PF-------------LAE 206

Query: 343 CLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCG 402
             ++ +  ++N   +     F+ +        + +  LL  +   R++  +AL+HP+L  
Sbjct: 207 TNQQIIENIMNAEYTFDEEAFKEISI---EAMDFVDRLLVKERKSRMTASEALQHPWLKQ 263

Query: 403 PRWRVDPSI 411
              RV   +
Sbjct: 264 KIERVSTKV 272

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (134), Expect = 5e-09
 Identities = 50/338 (14%), Positives = 89/338 (26%), Gaps = 81/338 (23%)

Query: 82  RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAI 141
           +  M DF  L  +  G  G     V     K +        +    +I+           
Sbjct: 1   KVTMNDFDYLKLLGKGTFG----KVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTES 56

Query: 142 EVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPT 201
            VL+      L    Y+ Q H  +                +Y     L   L +      
Sbjct: 57  RVLQNTRHPFLTALKYAFQTHDRL------------CFVMEYANGGELFFHLSRERVFT- 103

Query: 202 LEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLEN 261
                                           R    +++  + YLHS  + + +++LEN
Sbjct: 104 ----------------------------EERARFYGAEIVSALEYLHSRDVVYRDIKLEN 135

Query: 262 VHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVGFM 313
           + +   D HIK+   G   +   D        G         ++      A D   +G +
Sbjct: 136 LMLDK-DGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVV 194

Query: 314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAG 373
           M +M+   L                 D          +L           +         
Sbjct: 195 MYEMMCGRLPFY------------NQDH---ERLFELILMEE-------IRFPRTLSPEA 232

Query: 374 WNLLSLLLATKPSKRISCL-----DALRHPFLCGPRWR 406
            +LL+ LL   P +R+        + + H F     W+
Sbjct: 233 KSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQ 270

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 55.7 bits (133), Expect = 6e-09
 Identities = 57/335 (17%), Positives = 117/335 (34%), Gaps = 70/335 (20%)

Query: 85  MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVL 144
           M  +  L+++  G  G    VV++A  +++       K +  +           R I +L
Sbjct: 1   MEKYHGLEKIGEGTYG----VVYKA--QNNYGETFALKKIRLEKEDEGIPSTTIREISIL 54

Query: 145 KKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEA 204
           K+L       HS  ++++  + +          ++  ++      +        L ++ A
Sbjct: 55  KEL------KHSNIVKLYDVIHTKK------RLVLVFEHLDQDLKKLLDVCEGGLESVTA 102

Query: 205 TLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHI 264
                                        +  +  LL G+ Y H   + H +L+ +N+ I
Sbjct: 103 -----------------------------KSFLLQLLNGIAYCHDRRVLHRDLKPQNLLI 133

Query: 265 SPVDRHIKVGILGNAADFYEDG---------PNNSSPDSNMDRRQMMIAFDMRCVGFMMA 315
           +  +  +K+   G A  F                 +PD  M  ++     D+  VG + A
Sbjct: 134 NR-EGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFA 192

Query: 316 KMVLRELMDP---------LIFTKFKSFLTKGI-DPSCLREFLLQVLNRNSSSGNTGFQI 365
           +MV    + P          IF    +  +K   + + L ++             +  + 
Sbjct: 193 EMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKG 252

Query: 366 LDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFL 400
           LD    +G +LLS +L   P++RI+   AL H + 
Sbjct: 253 LDE---SGIDLLSKMLKLDPNQRITAKQALEHAYF 284

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (134), Expect = 6e-09
 Identities = 48/360 (13%), Positives = 113/360 (31%), Gaps = 82/360 (22%)

Query: 87  DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKK 146
           DF+ +  +  G  G    VVF+   K S   +   + ++   I    + +  R ++VL +
Sbjct: 7   DFEKISELGAGNGG----VVFKVSHKPSGLVM--ARKLIHLEIKPAIRNQIIRELQVLHE 60

Query: 147 LVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATL 206
                     Y +  +G   S         ++   ++    SL   L++A  +P      
Sbjct: 61  C------NSPYIVGFYGAFYSDGE-----ISICM-EHMDGGSLDQVLKKAGRIP------ 102

Query: 207 ALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHS-HGLAHTELRLENVHIS 265
                                   +++  +   ++ G+ YL   H + H +++  N+ ++
Sbjct: 103 -----------------------EQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVN 139

Query: 266 PVDRHIKVGILGNAADFYEDGPNNS-------SPDSNMDRRQMMIAFDMRCVGFMMAKMV 318
                IK+   G +    +   N+        SP+  +      +  D+  +G  + +M 
Sbjct: 140 S-RGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPER-LQGTHYSVQSDIWSMGLSLVEMA 197

Query: 319 LREL---------MDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRN 369
           +            ++ +   + +    +           L     +S      F++LD  
Sbjct: 198 VGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYI 257

Query: 370 WGAGW-------------NLLSLLLATKPSKRISCLDALRHPFLCGPRWRVDPSIDMIRW 416
                             + ++  L   P++R      + H F+          +D   W
Sbjct: 258 VNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSDAE---EVDFAGW 314

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.4 bits (132), Expect = 8e-09
 Identities = 47/362 (12%), Positives = 108/362 (29%), Gaps = 82/362 (22%)

Query: 82  RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQL-ISVQAQRRGRRA 140
            +    + ++ ++  G        V+ A    +N     T V ++ +             
Sbjct: 9   PYKDARYILVRKLGWGHFS----TVWLAKDMVNN-----THVAMKIVRGDKVYTEAAEDE 59

Query: 141 IEVLKKL-----VRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQ 195
           I++L+++      +   M  ++ +++  + +    +G  +  ++  +  G   L    + 
Sbjct: 60  IKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNG--VHVVMVFEVLGENLLALIKKY 117

Query: 196 ADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLH-SHGLAH 254
                 L                              ++ + + LL+G++Y+H   G+ H
Sbjct: 118 EHRGIPLI----------------------------YVKQISKQLLLGLDYMHRRCGIIH 149

Query: 255 TELRLENVHISPVDR-----HIKVGILGNAADFYED-----GPNNSSPDSNMDRRQMMIA 304
           T+++ ENV +  VD       IK+  LGNA  + E                +        
Sbjct: 150 TDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCG 209

Query: 305 FDMRCVGFMMAKMVLREL--------------------------MDPLIFTKFKSFLTKG 338
            D+     ++ +++  +                           +   +    K   T  
Sbjct: 210 ADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFF 269

Query: 339 IDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHP 398
                LR                 ++          + LS +L   P KR      + HP
Sbjct: 270 NSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHP 329

Query: 399 FL 400
           +L
Sbjct: 330 WL 331

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (130), Expect = 1e-08
 Identities = 44/308 (14%), Positives = 105/308 (34%), Gaps = 74/308 (24%)

Query: 105 VVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGY 164
            V++ +  ++   +     +  + ++   ++R +   E+LK L       H   ++ +  
Sbjct: 24  TVYKGLDTETTVEVA-WCELQDRKLTKSERQRFKEEAEMLKGLQ------HPNIVRFYDS 76

Query: 165 VSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGP 224
             S     + +  LV  +   S +L+ +L++   +                         
Sbjct: 77  WESTVKGKKCIV-LVT-ELMTSGTLKTYLKRFKVMK------------------------ 110

Query: 225 AASRQLRLIRLLMRDLLIGVNYLHSHG--LAHTELRLENVHISPVDRHIKVGILGNAADF 282
                ++++R   R +L G+ +LH+    + H +L+ +N+ I+     +K+G LG  A  
Sbjct: 111 -----IKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLG-LATL 164

Query: 283 YEDGPNNS--------SPDSNMDRRQMMIAFDMRCVGFMMAKMVLREL--MDPLIFTKFK 332
                  +        +P+  M   +   + D+   G  M +M   E    +     +  
Sbjct: 165 KRASFAKAVIGTPEFMAPE--MYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIY 222

Query: 333 SFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCL 392
             +T G+ P+   +  +  +                       ++   +     +R S  
Sbjct: 223 RRVTSGVKPASFDKVAIPEV---------------------KEIIEGCIRQNKDERYSIK 261

Query: 393 DALRHPFL 400
           D L H F 
Sbjct: 262 DLLNHAFF 269

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 3e-08
 Identities = 47/354 (13%), Positives = 104/354 (29%), Gaps = 87/354 (24%)

Query: 74  ESDSGHVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLI---- 129
            + +GH  +  + +F++L  +  G  G     VF    +  +         ++ L     
Sbjct: 12  ANLTGHAEKVGIENFELLKVLGTGAYG----KVFLV--RKISGHDTGKLYAMKVLKKATI 65

Query: 130 --SVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSF 187
               +     R   +VL+      +    + + +H    + T         +   Y    
Sbjct: 66  VQKAKTTEHTRTERQVLE-----HIRQSPFLVTLHYAFQTET------KLHLILDYINGG 114

Query: 188 SLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYL 247
            L   L Q +                                   +++ + ++++ + +L
Sbjct: 115 ELFTHLSQRERFT-----------------------------EHEVQIYVGEIVLALEHL 145

Query: 248 HSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNSSPDSNMDRRQMMI---- 303
           H  G+ + +++LEN+ +   + H+ +   G + +F  D    +                 
Sbjct: 146 HKLGIIYRDIKLENILLDS-NGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRG 204

Query: 304 -------AFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNS 356
                  A D   +G +M ++           T    F   G + +   E   ++L    
Sbjct: 205 GDSGHDKAVDWWSLGVLMYEL----------LTGASPFTVDG-EKNSQAEISRRILKSE- 252

Query: 357 SSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCL-----DALRHPFLCGPRW 405
                             +L+  LL   P KR+ C      +   H F     W
Sbjct: 253 ------PPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKINW 300

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (126), Expect = 5e-08
 Identities = 36/343 (10%), Positives = 81/343 (23%), Gaps = 84/343 (24%)

Query: 83  FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKV---VLRQLISVQAQRRGRR 139
           F   + +    +  G  G     V  A     +    + +V   +L++      +     
Sbjct: 34  FPRENLEFGKVLGSGAFG----KVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMS 89

Query: 140 AIEVLKKLVRRRLMYHSYSMQVHGYVSSHTT--------SGRSLFTLVHGQYHGSFSLRH 191
            ++++ +L       H   + + G  +                L   +  +         
Sbjct: 90  ELKMMTQLGS-----HENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEI 144

Query: 192 WLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHG 251
             +    L   E    L  E +                          +  G+ +L    
Sbjct: 145 EYENQKRLEEEEDLNVLTFEDLLC--------------------FAYQVAKGMEFLEFKS 184

Query: 252 LAHTELRLENVHISPVDRHIKVGILGNAADFYED----------GPNNSSPDSNMDRRQM 301
             H +L   NV ++   + +K+   G A D   D           P       ++     
Sbjct: 185 CVHRDLAARNVLVTH-GKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIY 243

Query: 302 MIAFDMRCVGFMMAKMVLR-------ELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNR 354
            I  D+   G ++ ++            +D   +   ++            E        
Sbjct: 244 TIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFKMDQPFYATEEIY------ 297

Query: 355 NSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRH 397
                                ++    A    KR S  +    
Sbjct: 298 --------------------IIMQSCWAFDSRKRPSFPNLTSF 320

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (123), Expect = 1e-07
 Identities = 28/191 (14%), Positives = 64/191 (33%), Gaps = 39/191 (20%)

Query: 231 RLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNNS 290
              R    +++  + YLH  G+ H +L+ EN+ ++  D HI++   G A     +     
Sbjct: 108 TCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNE-DMHIQITDFGTAKVLSPESKQAR 166

Query: 291 SPDSNMDRRQM----------MIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGID 340
           +       + +            + D+  +G ++ ++V         F     +      
Sbjct: 167 ANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPP----FRAGNEY------ 216

Query: 341 PSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDA------ 394
                    +++          +   ++ +    +L+  LL    +KR+ C +       
Sbjct: 217 -----LIFQKIIKLE-------YDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPL 264

Query: 395 LRHPFLCGPRW 405
             HPF     W
Sbjct: 265 KAHPFFESVTW 275

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (122), Expect = 1e-07
 Identities = 43/327 (13%), Positives = 85/327 (25%), Gaps = 58/327 (17%)

Query: 83  FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKV---VLRQLISVQAQRRGRR 139
           F     K+   +  G  G     V EA     +       V   +L++  +    R    
Sbjct: 10  FPRDRLKLGKPLGRGAFG----QVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMS 65

Query: 140 AIEVLKKLVRR----RLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQ 195
            +++L  +        L+           V        +L T +  +       R+    
Sbjct: 66  ELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSK-------RNEFVP 118

Query: 196 ADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHT 255
               P       L  E +                          +  G+ +L S    H 
Sbjct: 119 YKVAPEDLYKDFLTLEHLIC--------------------YSFQVAKGMEFLASRKCIHR 158

Query: 256 ELRLENVHISPVDRHIKVGILGNAADFYEDGPNNSSPDSNMDRRQMMIAFDMR-----CV 310
           +L   N+ +S     +K+   G A D Y+D       D+ +  + M              
Sbjct: 159 DLAARNILLSE-KNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQS 217

Query: 311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNW 370
                 ++L E+                         + +   R    G    +  D   
Sbjct: 218 DVWSFGVLLWEIFS-------------LGASPYPGVKIDEEFCRRLKEGTR-MRAPDYTT 263

Query: 371 GAGWNLLSLLLATKPSKRISCLDALRH 397
              +  +      +PS+R +  + + H
Sbjct: 264 PEMYQTMLDCWHGEPSQRPTFSELVEH 290

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.2 bits (122), Expect = 2e-07
 Identities = 41/333 (12%), Positives = 98/333 (29%), Gaps = 78/333 (23%)

Query: 83  FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIE 142
           +++ DF+IL  +  G  G     V     + +        +    ++ ++          
Sbjct: 1   YSLQDFQILRTLGTGSFG----RVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERL 56

Query: 143 VLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTL 202
           +L  +       H + +++ G              ++     G        +   +    
Sbjct: 57  MLSIV------THPFIIRMWGTFQDAQQ-----IFMIMDYIEGGELFSLLRKSQRFPN-- 103

Query: 203 EATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENV 262
                                        + +    ++ + + YLHS  + + +L+ EN+
Sbjct: 104 ----------------------------PVAKFYAAEVCLALEYLHSKDIIYRDLKPENI 135

Query: 263 HISPVDRHIKVGILGNAADFYED-----GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKM 317
            +   + HIK+   G A    +      G  +      +  +    + D    G     +
Sbjct: 136 LLDK-NGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFG-----I 189

Query: 318 VLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLL 377
           ++ E++       +  F     +     +   ++LN          +          +LL
Sbjct: 190 LIYEML-----AGYTPF--YDSNT---MKTYEKILNAE-------LRFPPFFNEDVKDLL 232

Query: 378 SLLLATKPSKRISCL-----DALRHPFLCGPRW 405
           S L+    S+R+  L     D   HP+     W
Sbjct: 233 SRLITRDLSQRLGNLQNGTEDVKNHPWFKEVVW 265

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (117), Expect = 7e-07
 Identities = 47/330 (14%), Positives = 93/330 (28%), Gaps = 76/330 (23%)

Query: 85  MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVL 144
           + DF +   +  G  G     VF A  K +N         ++ L              ++
Sbjct: 1   IEDFILHKMLGKGSFG----KVFLAEFKKTN-----QFFAIKALKKDVVLMDDDVECTMV 51

Query: 145 KKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEA 204
           +K V      H +   +     +              +Y     L + +Q          
Sbjct: 52  EKRVLSLAWEHPFLTHMFCTFQTKE------NLFFVMEYLNGGDLMYHIQSCHKFD---- 101

Query: 205 TLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHI 264
                                    L        ++++G+ +LHS G+ + +L+L+N+ +
Sbjct: 102 -------------------------LSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILL 136

Query: 265 SPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAK 316
              D HIK+   G   +            G  +      +  ++   + D    G ++ +
Sbjct: 137 DK-DGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYE 195

Query: 317 MVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNL 376
           M++ +                G D   L   +                          +L
Sbjct: 196 MLIGQSPFH------------GQDEEELFHSIR----------MDNPFYPRWLEKEAKDL 233

Query: 377 LSLLLATKPSKRISCLDALR-HPFLCGPRW 405
           L  L   +P KR+     +R HP      W
Sbjct: 234 LVKLFVREPEKRLGVRGDIRQHPLFREINW 263

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (116), Expect = 8e-07
 Identities = 47/329 (14%), Positives = 103/329 (31%), Gaps = 79/329 (24%)

Query: 87  DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKK 146
           D+++L  +  G  G       +   K     L   K +    ++   ++     + +L++
Sbjct: 5   DYEVLYTIGTGSYG----RCQKIRRKSDGKIL-VWKELDYGSMTEAEKQMLVSEVNLLRE 59

Query: 147 LVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATL 206
           L       H   ++ +  +   T +   +      +Y     L   + +       +   
Sbjct: 60  L------KHPNIVRYYDRIIDRTNTTLYIVM----EYCEGGDLASVITKG-----TKERQ 104

Query: 207 ALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLH-----SHGLAHTELRLEN 261
            LDEE V +V                    M  L + +   H      H + H +L+  N
Sbjct: 105 YLDEEFVLRV--------------------MTQLTLALKECHRRSDGGHTVLHRDLKPAN 144

Query: 262 VHISPVDRHIKVGILGNAADFYEDG---------PNNSSPDSNMDRRQMMIAFDMRCVGF 312
           V +    +++K+G  G A     D          P   SP+  M+R       D+  +G 
Sbjct: 145 VFLDG-KQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQ-MNRMSYNEKSDIWSLGC 202

Query: 313 MMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNW-G 371
           ++ ++                           +E   ++           F+ +   +  
Sbjct: 203 LLYELCALMPP---------------FTAFSQKELAGKIREGK-------FRRIPYRYSD 240

Query: 372 AGWNLLSLLLATKPSKRISCLDALRHPFL 400
               +++ +L  K   R S  + L +P +
Sbjct: 241 ELNEIITRMLNLKDYHRPSVEEILENPLI 269

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.3 bits (114), Expect = 1e-06
 Identities = 29/212 (13%), Positives = 59/212 (27%), Gaps = 25/212 (11%)

Query: 83  FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKV---VLRQLISVQAQRRGRR 139
           +   + + +  +  G  GR    VF+A           T V   +L++  S   Q   +R
Sbjct: 10  YPRNNIEYVRDIGEGAFGR----VFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQR 65

Query: 140 AIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWL 199
              ++ +              V             L      +Y     L  +L+     
Sbjct: 66  EAALMAEF--------DNPNIVKLLGVCAVGKPMCLLF----EYMAYGDLNEFLRSMSPH 113

Query: 200 PTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRL 259
                + +      R           A +       + R +  G+ YL      H +L  
Sbjct: 114 TVCSLSHSDLSTRARVSSPGPPPLSCAEQ-----LCIARQVAAGMAYLSERKFVHRDLAT 168

Query: 260 ENVHISPVDRHIKVGILGNAADFYEDGPNNSS 291
            N  +   +  +K+   G + + Y      + 
Sbjct: 169 RNCLVGE-NMVVKIADFGLSRNIYSADYYKAD 199

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.7 bits (113), Expect = 2e-06
 Identities = 30/184 (16%), Positives = 64/184 (34%), Gaps = 27/184 (14%)

Query: 231 RLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDR--HIKVGILGNAADFYEDGPN 288
           R    L+  +L  V YLH  G+ H +L+ EN+    +D    I +   G +         
Sbjct: 107 RDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVL 166

Query: 289 NSS-------PDSNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDP 341
           +++           + ++    A D   +G +   ++                     + 
Sbjct: 167 STACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYP------------PFYDEND 214

Query: 342 SCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLC 401
           +   +   Q+L       +  +  +     +  + +  L+   P KR +C  AL+HP++ 
Sbjct: 215 A---KLFEQILKAEYEFDSPYWDDISD---SAKDFIRHLMEKDPEKRFTCEQALQHPWIA 268

Query: 402 GPRW 405
           G   
Sbjct: 269 GDTA 272

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 6e-06
 Identities = 41/326 (12%), Positives = 81/326 (24%), Gaps = 87/326 (26%)

Query: 83  FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIE 142
            NM + K+L  +  G  G     V               KV ++ + +    +       
Sbjct: 4   LNMKELKLLQTIGKGEFG----DVMLGD-------YRGNKVAVKCIKNDATAQAFLAEAS 52

Query: 143 VLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTL 202
           V+ +L       HS  +Q+ G +       +    +V  +Y    SL  +L+        
Sbjct: 53  VMTQL------RHSNLVQLLGVI----VEEKGGLYIVT-EYMAKGSLVDYLRSRGRSV-- 99

Query: 203 EATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENV 262
                L  + + K                       D+   + YL  +   H +L   NV
Sbjct: 100 -----LGGDCLLKF--------------------SLDVCEAMEYLEGNNFVHRDLAARNV 134

Query: 263 HISPVDRHIKVGILGNAADFYEDGPNNSSPDSNMDRRQMM-----IAFDMRCVGFMMAKM 317
            +S  D   KV   G   +          P        +         D+   G ++ ++
Sbjct: 135 LVSE-DNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEI 193

Query: 318 VLR------ELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWG 371
                     +    +  + +          C                            
Sbjct: 194 YSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAV------------------------ 229

Query: 372 AGWNLLSLLLATKPSKRISCLDALRH 397
             + ++        + R S L     
Sbjct: 230 --YEVMKNCWHLDAAMRPSFLQLREQ 253

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 47/319 (14%), Positives = 91/319 (28%), Gaps = 43/319 (13%)

Query: 83  FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKV---VLRQLISVQAQRRGRR 139
           F          +  G  G     V EA             V   +L+    +  +     
Sbjct: 20  FPRNRLSFGKTLGAGAFG----KVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMS 75

Query: 140 AIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWL 199
            ++VL  L       H   + + G     T  G +L      +Y     L ++L++    
Sbjct: 76  ELKVLSYLGN-----HMNIVNLLGAC---TIGGPTLVIT---EYCCYGDLLNFLRRKRDS 124

Query: 200 PTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRL 259
                T     E      D           L  +      +  G+ +L S    H +L  
Sbjct: 125 FICSKTSPAIMEDDELALD-----------LEDLLSFSYQVAKGMAFLASKNCIHRDLAA 173

Query: 260 ENVHISPVDRHIKVGILGNAADFYEDGPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMVL 319
            N+ ++   R  K+   G A D   D       ++ +  + M       CV    + +  
Sbjct: 174 RNILLTH-GRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWS 232

Query: 320 RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNW--GAGWNLL 377
             +    +F+   S        S   + +             GF++L         ++++
Sbjct: 233 YGIFLWELFSLGSSPYPGMPVDSKFYKMI-----------KEGFRMLSPEHAPAEMYDIM 281

Query: 378 SLLLATKPSKRISCLDALR 396
                  P KR +    ++
Sbjct: 282 KTCWDADPLKRPTFKQIVQ 300

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 6e-05
 Identities = 33/184 (17%), Positives = 63/184 (34%), Gaps = 28/184 (15%)

Query: 233 IRLLMRDLLIGVNYLHSHGLAHTELRLENVHIS---PVDRHIKVGILGNAADFYEDGPNN 289
               ++ +L GV YLHS  +AH +L+ EN+ +         IK+   G A          
Sbjct: 115 ATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFK 174

Query: 290 SSPDSN-------MDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPS 342
           +   +        ++   + +  DM  +G +   ++                        
Sbjct: 175 NIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFL---------------GD 219

Query: 343 CLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCG 402
             +E L  V   N    +  F           + +  LL   P KR++  D+L+HP++  
Sbjct: 220 TKQETLANVSAVNYEFEDEYFSNTSA---LAKDFIRRLLVKDPKKRMTIQDSLQHPWIKP 276

Query: 403 PRWR 406
              +
Sbjct: 277 KDTQ 280

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 29/335 (8%), Positives = 89/335 (26%), Gaps = 85/335 (25%)

Query: 86  GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLK 145
             +++  ++  G  G     ++      +       +V ++         +     ++ K
Sbjct: 7   NRYRLGRKIGSGSFG----DIYLGTDIAAG-----EEVAIKLECVKTKHPQLHIESKIYK 57

Query: 146 KLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEAT 205
            +           +    +  +        + ++  +  G      +   +         
Sbjct: 58  MMQ------GGVGIPTIRWCGAEGD-----YNVMVMELLGPSLEDLFNFCSRKFS----- 101

Query: 206 LALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENV--H 263
                                   L+ + LL   ++  + Y+HS    H +++ +N    
Sbjct: 102 ------------------------LKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMG 137

Query: 264 ISPVDRHIKVGILGNAADFYEDG----------------PNNSSPDSNMDRRQMMIAFDM 307
           +      + +   G A  + +                     +S ++++   Q     D+
Sbjct: 138 LGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRD-DL 196

Query: 308 RCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILD 367
             +G+++    L  L    +    K    + I    +    ++VL +   S         
Sbjct: 197 ESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMS-TPIEVLCKGYPS--------- 246

Query: 368 RNWGAGWNLLSLLLATKPSKRIS---CLDALRHPF 399
                    L+   + +   +          R+ F
Sbjct: 247 ----EFATYLNFCRSLRFDDKPDYSYLRQLFRNLF 277

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 44/329 (13%), Positives = 96/329 (29%), Gaps = 77/329 (23%)

Query: 86  GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLK 145
             +++ + +  G        V  A     +  +    +            R RR  +   
Sbjct: 7   DRYELGEILGFGGMS----EVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAA 62

Query: 146 KLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEAT 205
            L       H   + V+    + T +G   + +V  +Y    +LR  +     +      
Sbjct: 63  AL------NHPAIVAVYDTGEAETPAGPLPY-IVM-EYVDGVTLRDIVHTEGPMT----- 109

Query: 206 LALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHIS 265
                                    +    ++ D    +N+ H +G+ H +++  N+ IS
Sbjct: 110 ------------------------PKRAIEVIADACQALNFSHQNGIIHRDVKPANIMIS 145

Query: 266 PVDRHIKVGILGNAADFYEDGPNNSSPDSNMDRRQMM-----------IAFDMRCVGFMM 314
                +KV   G A    + G + +   + +   Q +              D+  +G ++
Sbjct: 146 A-TNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVL 204

Query: 315 AKMVLRELM---DPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWG 371
            +++  E     D  +   ++      I PS   E L   L+                  
Sbjct: 205 YEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLD------------------ 246

Query: 372 AGWNLLSLLLATKPSKRISCLDALRHPFL 400
               ++   LA  P  R      +R   +
Sbjct: 247 ---AVVLKALAKNPENRYQTAAEMRADLV 272

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 42/339 (12%), Positives = 87/339 (25%), Gaps = 91/339 (26%)

Query: 81  IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRA 140
           +     +  I D   +G        V + + +     +     VL+Q           R 
Sbjct: 3   LFLKRDNLLIADIE-LGCGNFG--SVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMRE 59

Query: 141 IEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLP 200
            +++ +L       + Y +++ G   +          LV  +  G   L  +L       
Sbjct: 60  AQIMHQL------DNPYIVRLIGVCQAEA------LMLVM-EMAGGGPLHKFLVGKRE-- 104

Query: 201 TLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLE 260
                  +   +V +                    L+  + +G+ YL      H +L   
Sbjct: 105 ------EIPVSNVAE--------------------LLHQVSMGMKYLEEKNFVHRDLAAR 138

Query: 261 NVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDMRC 309
           NV +     + K+   G +     D            P        ++ R+     D+  
Sbjct: 139 NVLLVN-RHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWS 197

Query: 310 VGFMMAKMVLR------ELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGF 363
            G  M + +        ++  P +    +        P C  E                 
Sbjct: 198 YGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPPEL---------------- 241

Query: 364 QILDRNWGAGWNLLSLLLATKPSKRIS---CLDALRHPF 399
                     + L+S     K   R         +R  +
Sbjct: 242 ----------YALMSDCWIYKWEDRPDFLTVEQRMRACY 270

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 0.001
 Identities = 41/327 (12%), Positives = 101/327 (30%), Gaps = 88/327 (26%)

Query: 87  DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKV-VLRQLISVQAQRRGRRAIEVLK 145
             ++   +  G  G     V + I     +P     +   +   S   + +  +    ++
Sbjct: 8   RIELGRCIGEGQFG----DVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMR 63

Query: 146 KLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEAT 205
           +        H + +++ G ++ +      ++ ++     G   LR +LQ   +       
Sbjct: 64  QF------DHPHIVKLIGVITENP-----VWIIMELCTLGE--LRSFLQVRKY------- 103

Query: 206 LALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHIS 265
            +LD  S+                          L   + YL S    H ++   NV +S
Sbjct: 104 -SLDLASLILY--------------------AYQLSTALAYLESKRFVHRDIAARNVLVS 142

Query: 266 PVDRHIKVGILGNAADFYEDGPNNSS---------PDSNMDRRQMMIAFDMRCVGFMMAK 316
             D  +K+G  G +    +     +S            +++ R+   A D+   G  M +
Sbjct: 143 SND-CVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWE 201

Query: 317 MVLR------ELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNW 370
           +++        + +  +  + ++     + P+C                           
Sbjct: 202 ILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTL----------------------- 238

Query: 371 GAGWNLLSLLLATKPSKRISCLDALRH 397
              ++L++   A  PS+R    +    
Sbjct: 239 ---YSLMTKCWAYDPSRRPRFTELKAQ 262

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 0.003
 Identities = 37/307 (12%), Positives = 80/307 (26%), Gaps = 72/307 (23%)

Query: 87  DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKV-VLRQ--LISVQAQRRGRRAIEV 143
           D ++L+++  G  G    VV        +    +  V  L+   L   +A     R +  
Sbjct: 9   DLRLLEKLGDGSFG----VVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA 64

Query: 144 LKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLE 203
           +  L       H   ++++G V +          +V         L    +         
Sbjct: 65  MHSL------DHRNLIRLYGVVLTPP------MKMVTELAPLGSLLDRLRKHQGHFL--- 109

Query: 204 ATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVH 263
                                     L  +      +  G+ YL S    H +L   N+ 
Sbjct: 110 --------------------------LGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLL 143

Query: 264 ISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDMRCVGF 312
           ++     +K+G  G      ++            P       ++  R    A D    G 
Sbjct: 144 LAT-RDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGV 202

Query: 313 MMAKMVLR-----------ELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNT 361
            + +M              +++  +     +    +      +   ++Q          T
Sbjct: 203 TLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQD-IYNVMVQCWAHKPEDRPT 261

Query: 362 GFQILDR 368
              + D 
Sbjct: 262 FVALRDF 268

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	667
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.88
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	98.19
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	97.59
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.58
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	96.61
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	96.35
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	95.72

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-55  Score=447.90  Aligned_cols=247  Identities=20%  Similarity=0.265  Sum_probs=210.2

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCC
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      +|.+++|++++.||+|+||    +||+|+++.     +++.||+|++.+..     ..+.+.+|+++|++++      ||
T Consensus         2 ~~~l~dy~i~~~iG~G~fg----~Vy~~~~~~-----~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~------hp   66 (263)
T d2j4za1           2 QWALEDFEIGRPLGKGKFG----NVYLAREKQ-----SKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLR------HP   66 (263)
T ss_dssp             CCCGGGEEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCC------CT
T ss_pred             CcchhHeEEEEEEecCCCc----EEEEEEECC-----CCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcC------CC
Confidence            4678999999999999999    999999998     89999999997532     2356789999999994      99


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      |||++++++.     +.+.+||||| ||++|+|.+++.+.+         .++|.                    .++.|
T Consensus        67 nIv~~~~~~~-----~~~~~~ivmE-y~~~g~L~~~l~~~~---------~l~e~--------------------~~~~i  111 (263)
T d2j4za1          67 NILRLYGYFH-----DATRVYLILE-YAPLGTVYRELQKLS---------KFDEQ--------------------RTATY  111 (263)
T ss_dssp             TBCCEEEEEE-----CSSEEEEEEE-CCTTCBHHHHHHHHS---------SCCHH--------------------HHHHH
T ss_pred             CCCeEEEEEE-----ECCEEEEEEe-ecCCCcHHHHHhhcC---------CCCHH--------------------HHHHH
Confidence            9999999999     8889999999 999999999998764         56654                    56789


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-------CCCCCcccccCCCCCCchhhHHH
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-------PNNSSPDSNMDRRQMMIAFDMRC  309 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-------~~Y~APE~l~~~~~ys~ksDIWS  309 (667)
                      +.||+.||+|||++||+||||||+|||++. ++.+||+|||+|+......       +.|+|||++. +..|+.++||||
T Consensus       112 ~~qi~~al~~lH~~~ivHrDiKp~Nill~~-~~~~kl~DFG~a~~~~~~~~~~~~Gt~~Y~APE~~~-~~~~~~~~DiwS  189 (263)
T d2j4za1         112 ITELANALSYCHSKRVIHRDIKPENLLLGS-AGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIE-GRMHDEKVDLWS  189 (263)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCCCGGGEEECT-TSCEEECCCCSCSCCCCCCCEETTEEGGGCCHHHHT-TCCCCTTHHHHH
T ss_pred             HHHHHHHHHHHHHCCeeeeeeccccceecC-CCCEeecccceeeecCCCcccccCCCCcccCHHHHc-CCCCCchhhhhh
Confidence            999999999999999999999999999998 8999999999998765443       7899999655 456899999999


Q ss_pred             HHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          310 VGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       310 LGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      |||++|||++|++||.            +.....+...   +....       ...+..+++++++||.+||++||++||
T Consensus       190 lGvilyell~G~~Pf~------------~~~~~~~~~~---i~~~~-------~~~p~~~s~~~~~li~~~L~~dp~~R~  247 (263)
T d2j4za1         190 LGVLCYEFLVGKPPFE------------ANTYQETYKR---ISRVE-------FTFPDFVTEGARDLISRLLKHNPSQRP  247 (263)
T ss_dssp             HHHHHHHHHHSSCTTC------------CSSHHHHHHH---HHTTC-------CCCCTTSCHHHHHHHHHHTCSSGGGSC
T ss_pred             HhHHHHHHhcCCCCCC------------CCCHHHHHHH---HHcCC-------CCCCccCCHHHHHHHHHHccCCHhHCc
Confidence            9999999999999995            3333332222   22221       223456889999999999999999999


Q ss_pred             CHHHHHcCCCCCC
Q 005958          390 SCLDALRHPFLCG  402 (667)
Q Consensus       390 Sa~elL~HPwf~~  402 (667)
                      |++|+|+||||+.
T Consensus       248 t~~eil~hp~~~~  260 (263)
T d2j4za1         248 MLREVLEHPWITA  260 (263)
T ss_dssp             CHHHHHTCHHHHH
T ss_pred             CHHHHHcCcCcCC
Confidence            9999999999964

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-55  Score=451.03  Aligned_cols=249  Identities=19%  Similarity=0.219  Sum_probs=204.8

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      .++|++++.||+|+||    +||+|+++.     +++.||||++....   ..+.+.+|+++|++++      |||||++
T Consensus         4 ~~dy~~~~~lG~G~fg----~V~~~~~~~-----~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~------HpnIv~~   68 (271)
T d1nvra_           4 VEDWDLVQTLGEGAYG----EVQLAVNRV-----TEEAVAVKIVDMKRAVDCPENIKKEICINKMLN------HENVVKF   68 (271)
T ss_dssp             TTEEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEECC-------CHHHHHHHHHTCC------CTTBCCE
T ss_pred             CcceEEEEEEecCcCe----EEEEEEECC-----CCCEEEEEEEehhhcchHHHHHHHHHHHHHhCC------CCCEeeE
Confidence            5789999999999999    999999998     89999999997532   2345789999999994      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     +.+.+||||| ||++|+|.+++...+         .++|.                    .++.++.||+
T Consensus        69 ~~~~~-----~~~~~~ivmE-y~~gg~L~~~l~~~~---------~l~e~--------------------~~~~i~~qi~  113 (271)
T d1nvra_          69 YGHRR-----EGNIQYLFLE-YCSGGELFDRIEPDI---------GMPEP--------------------DAQRFFHQLM  113 (271)
T ss_dssp             EEEEE-----ETTEEEEEEE-CCTTEEGGGGSBTTT---------BCCHH--------------------HHHHHHHHHH
T ss_pred             eeeec-----cCceeEEEEe-ccCCCcHHHHHhcCC---------CCCHH--------------------HHHHHHHHHH
Confidence            99999     7789999999 999999999987644         56654                    5678999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-----------CCCCCCCcccccCCCCCCchhhHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-----------DGPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-----------~~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      .||+|||++||+||||||+|||++. ++.+||+|||+|+....           +++.|||||++.+...++.++||||+
T Consensus       114 ~al~ylH~~~IiHrDiKp~NILl~~-~~~~KL~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSl  192 (271)
T d1nvra_         114 AGVVYLHGIGITHRDIKPENLLLDE-RDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSC  192 (271)
T ss_dssp             HHHHHHHHTTEECSCCCGGGEEECT-TCCEEECCCTTCEECEETTEECCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHH
T ss_pred             HHHHHHHHcCCccCcccHHHEEECC-CCCEEEccchhheeeccCCccccccceeeCcCccCHhHhcCCCCCCCceeeeHh
Confidence            9999999999999999999999998 89999999999986532           23789999977766666789999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      ||++|||++|++||....           .........   ....     ........+++++++||.+||+.||++|||
T Consensus       193 Gvilyeml~G~~pf~~~~-----------~~~~~~~~~---~~~~-----~~~~~~~~~s~~~~~li~~~L~~dP~~R~t  253 (271)
T d1nvra_         193 GIVLTAMLAGELPWDQPS-----------DSCQEYSDW---KEKK-----TYLNPWKKIDSAPLALLHKILVENPSARIT  253 (271)
T ss_dssp             HHHHHHHHHSSCSCSSSS-----------TTSHHHHHH---HTTC-----TTSTTGGGSCHHHHHHHHHHSCSSTTTSCC
T ss_pred             HHHHHHHHhCCCCCCCCC-----------hHHHHHHHH---hcCC-----CCCCccccCCHHHHHHHHHHcCCChhHCcC
Confidence            999999999999995211           111111111   1110     112234567899999999999999999999


Q ss_pred             HHHHHcCCCCCCC
Q 005958          391 CLDALRHPFLCGP  403 (667)
Q Consensus       391 a~elL~HPwf~~~  403 (667)
                      ++|+|+||||+..
T Consensus       254 ~~eil~hpwf~~~  266 (271)
T d1nvra_         254 IPDIKKDRWYNKP  266 (271)
T ss_dssp             HHHHTTCTTTTCC
T ss_pred             HHHHhcCHhhCcC
Confidence            9999999999863

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-54  Score=446.75  Aligned_cols=252  Identities=17%  Similarity=0.270  Sum_probs=212.0

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      ..++|++++.||+|+||    +||+|+++.     +++.||||++.+..     ..+.+.+|+++|++++      ||||
T Consensus         6 ~p~dy~i~~~lG~G~fg----~Vy~a~~~~-----~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~------HpnI   70 (288)
T d1uu3a_           6 RPEDFKFGKILGEGSFS----TVVLARELA-----TSREYAIKILEKRHIIKENKVPYVTRERDVMSRLD------HPFF   70 (288)
T ss_dssp             CGGGEEEEEEEEECSSC----EEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCC------STTB
T ss_pred             CCCCCEEEEEEeeCCCe----EEEEEEECC-----CCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcC------CCCe
Confidence            34789999999999999    999999998     89999999997532     2356789999999994      9999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      |++++++.     +.+.+||||| ||++|+|.+++...+         .++|.                    .++.++.
T Consensus        71 v~l~~~~~-----~~~~~~ivmE-y~~gg~L~~~~~~~~---------~l~e~--------------------~~~~~~~  115 (288)
T d1uu3a_          71 VKLYFTFQ-----DDEKLYFGLS-YAKNGELLKYIRKIG---------SFDET--------------------CTRFYTA  115 (288)
T ss_dssp             CCEEEEEE-----CSSEEEEEEC-CCTTEEHHHHHHHHS---------SCCHH--------------------HHHHHHH
T ss_pred             eEEEEEEE-----ECCEEEEEEE-ccCCCCHHHhhhccC---------CCCHH--------------------HHHHHHH
Confidence            99999999     7899999999 999999999998765         56664                    5788999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-----------CCCCCCCcccccCCCCCCchhhH
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-----------DGPNNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-----------~~~~Y~APE~l~~~~~ys~ksDI  307 (667)
                      ||+.||+|||++||+||||||+|||++. ++.+||+|||+|+.+..           +++.|+|||++. +..|+.++||
T Consensus       116 qi~~al~ylH~~~iiHrDiKp~NIll~~-~~~vkl~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~-~~~~~~~~Di  193 (288)
T d1uu3a_         116 EIVSALEYLHGKGIIHRDLKPENILLNE-DMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLT-EKSACKSSDL  193 (288)
T ss_dssp             HHHHHHHHHHHTTEECSCCSGGGEEECT-TSCEEECCCTTCEECC----------CCCCGGGCCHHHHH-TCCCCHHHHH
T ss_pred             HHHHHHHhhccccEEcCcCCccccccCC-CceEEecccccceecccCCcccccccccCCccccCceeec-cCCCCcccce
Confidence            9999999999999999999999999998 89999999999986532           347899999654 4569999999


Q ss_pred             HHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          308 RCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       308 WSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      |||||++|||++|++||.            +.+...+.   ..+....       +..+..+++++++||.+||++||++
T Consensus       194 wSlGvilyell~g~~Pf~------------~~~~~~~~---~~i~~~~-------~~~p~~~s~~~~~li~~~L~~dP~~  251 (288)
T d1uu3a_         194 WALGCIIYQLVAGLPPFR------------AGNEYLIF---QKIIKLE-------YDFPEKFFPKARDLVEKLLVLDATK  251 (288)
T ss_dssp             HHHHHHHHHHHHSSCSSC------------CSSHHHHH---HHHHTTC-------CCCCTTCCHHHHHHHHTTSCSSGGG
T ss_pred             ehhhHHHHHHhhCCCCCC------------CcCHHHHH---HHHHcCC-------CCCCccCCHHHHHHHHHHccCCHhH
Confidence            999999999999999995            22332222   2222221       2234578999999999999999999


Q ss_pred             CCCHHH------HHcCCCCCCCCCCCCC
Q 005958          388 RISCLD------ALRHPFLCGPRWRVDP  409 (667)
Q Consensus       388 RpSa~e------lL~HPwf~~~~~~~~~  409 (667)
                      |||++|      +++||||++++|....
T Consensus       252 R~t~~e~~~~~~i~~Hpff~~i~w~~l~  279 (288)
T d1uu3a_         252 RLGCEEMEGYGPLKAHPFFESVTWENLH  279 (288)
T ss_dssp             STTSGGGTCHHHHHTSGGGTTCCCTTGG
T ss_pred             CcCHHHHcCCHHHHcCCccCCCCHHHhh
Confidence            999987      6899999999986543

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-53  Score=444.63  Aligned_cols=246  Identities=20%  Similarity=0.225  Sum_probs=205.6

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--hHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      ++|++++.||+|+||    +||+|+++.     +|+.||||++....  ..+.+.+|+++|++++      |||||++++
T Consensus        20 ~~Y~~~~~iG~G~fg----~Vy~a~~~~-----~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~------HpnIv~~~~   84 (293)
T d1yhwa1          20 KKYTRFEKIGQGASG----TVYTAMDVA-----TGQEVAIRQMNLQQQPKKELIINEILVMRENK------NPNIVNYLD   84 (293)
T ss_dssp             TTBCSCEECCCSSSC----EEEEEEBTT-----TCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCC------CTTBCCEEE
T ss_pred             cccEEEEEEecCcCc----EEEEEEECC-----CCCEEEEEEEecccChHHHHHHHHHHHHHhCC------CCCEeeEeE
Confidence            579999999999999    999999988     89999999997532  3456799999999994      999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++.     +.+.+||||| ||++|+|.+++.+.          .++|                    ..++.|++||+.|
T Consensus        85 ~~~-----~~~~~~ivmE-y~~gg~L~~~~~~~----------~l~~--------------------~~~~~i~~qi~~a  128 (293)
T d1yhwa1          85 SYL-----VGDELWVVME-YLAGGSLTDVVTET----------CMDE--------------------GQIAAVCRECLQA  128 (293)
T ss_dssp             EEE-----ETTEEEEEEE-CCTTCBHHHHHHHS----------CCCH--------------------HHHHHHHHHHHHH
T ss_pred             EEE-----ECCEEEEEEE-ecCCCcHHHHhhcc----------CCCH--------------------HHHHHHHHHHHHH
Confidence            999     7789999999 99999999988763          4565                    4578899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      |+|||++||+||||||+|||++. ++++||+|||+|+.+...         ++.|+|||++. +..|+.++|||||||++
T Consensus       129 L~yLH~~~iiHrDiKp~NILl~~-~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~aPE~~~-~~~~~~~~DiwSlGvil  206 (293)
T d1yhwa1         129 LEFLHSNQVIHRDIKSDNILLGM-DGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVT-RKAYGPKVDIWSLGIMA  206 (293)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECT-TCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHS-SSCBCTHHHHHHHHHHH
T ss_pred             HHHHHHCCCcccCCcHHHeEECC-CCcEeeccchhheeeccccccccccccCCCccChhhhc-CCCCCchhceehHhHHH
Confidence            99999999999999999999998 899999999999876432         37799999654 46699999999999999


Q ss_pred             HHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHH
Q 005958          315 AKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDA  394 (667)
Q Consensus       315 yemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~el  394 (667)
                      |||++|++||.+            ........   .+.....+    .++.+..+++++++||.+||++||++|||++|+
T Consensus       207 yemltG~~Pf~~------------~~~~~~~~---~~~~~~~~----~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~ei  267 (293)
T d1yhwa1         207 IEMIEGEPPYLN------------ENPLRALY---LIATNGTP----ELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKEL  267 (293)
T ss_dssp             HHHHHSSCTTTT------------SCHHHHHH---HHHHHCSC----CCSSGGGSCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred             HHHhhCCCCCCC------------CCHHHHHH---HHHhCCCC----CCCCcccCCHHHHHHHHHHccCChhHCcCHHHH
Confidence            999999999952            22211111   11111111    233456789999999999999999999999999


Q ss_pred             HcCCCCCCC
Q 005958          395 LRHPFLCGP  403 (667)
Q Consensus       395 L~HPwf~~~  403 (667)
                      |+||||+..
T Consensus       268 l~Hp~~~~~  276 (293)
T d1yhwa1         268 LQHQFLKIA  276 (293)
T ss_dssp             TTCGGGGGC
T ss_pred             hcCHhhCCC
Confidence            999999753

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-53  Score=449.95  Aligned_cols=249  Identities=21%  Similarity=0.277  Sum_probs=212.7

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      +.+++|++++.||+|+||    +||+|+++.     +++.||||++++..     ..+.+.+|+.+|+++      +|||
T Consensus         2 i~l~dy~~~~~lG~G~fg----~V~~~~~~~-----~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l------~hp~   66 (337)
T d1o6la_           2 VTMNDFDYLKLLGKGTFG----KVILVREKA-----TGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNT------RHPF   66 (337)
T ss_dssp             CCGGGEEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSC------CCTT
T ss_pred             CchHhcEEEEEEecCcCe----EEEEEEECC-----CCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhC------CCCC
Confidence            567899999999999999    999999998     89999999998632     235678999999999      4999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |++++++++     +.+.+|+||| ||++|+|.+++.+.+         .++|+                    .++.|+
T Consensus        67 Iv~l~~~~~-----~~~~~~iv~e-y~~gg~L~~~~~~~~---------~~~e~--------------------~~~~~~  111 (337)
T d1o6la_          67 LTALKYAFQ-----THDRLCFVME-YANGGELFFHLSRER---------VFTEE--------------------RARFYG  111 (337)
T ss_dssp             BCCEEEEEE-----CSSEEEEEEE-CCTTCBHHHHHHHHS---------CCCHH--------------------HHHHHH
T ss_pred             EEEEEeeec-----ccccccccee-ccCCCchhhhhhccc---------CCcHH--------------------HHHHHH
Confidence            999999999     8899999999 999999999998865         56664                    468899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHH
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      .||+.||+|||++||+||||||+|||++. +|.+||+|||+|+.....         ++.|+|||++. +..|+.++|||
T Consensus       112 ~qil~al~ylH~~~iiHRDlKP~NILl~~-~g~vkl~DFG~a~~~~~~~~~~~~~~GT~~Y~aPE~~~-~~~y~~~~Diw  189 (337)
T d1o6la_         112 AEIVSALEYLHSRDVVYRDIKLENLMLDK-DGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLE-DNDYGRAVDWW  189 (337)
T ss_dssp             HHHHHHHHHHHHTTCBCCCCCGGGEEECT-TSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGS-SSCBCTTHHHH
T ss_pred             HHHhhhhhhhhhcCccccccCHHHeEecC-CCCEEEeecccccccccCCcccccceeCHHHhhhhhcc-CCCCChhhccc
Confidence            99999999999999999999999999998 899999999999865432         27899999554 55689999999


Q ss_pred             HHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCC
Q 005958          309 CVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  388 (667)
Q Consensus       309 SLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kR  388 (667)
                      ||||++|||++|++||.            +.+...+.+.   +....       ...+..+|+++++||.+||++||++|
T Consensus       190 SlGvilyeml~G~~pf~------------~~~~~~~~~~---i~~~~-------~~~p~~~s~~~~dli~~~L~~dP~~R  247 (337)
T d1o6la_         190 GLGVVMYEMMCGRLPFY------------NQDHERLFEL---ILMEE-------IRFPRTLSPEAKSLLAGLLKKDPKQR  247 (337)
T ss_dssp             HHHHHHHHHHHSSCSSC------------CSSHHHHHHH---HHHCC-------CCCCTTSCHHHHHHHHHHTCSSTTTS
T ss_pred             chhhHHHHHHHCCCCCC------------CcCHHHHHHH---HhcCC-------CCCCccCCHHHHHHHHhhccCCchhh
Confidence            99999999999999985            3333333332   22221       23446789999999999999999999


Q ss_pred             CC-----HHHHHcCCCCCCCCC
Q 005958          389 IS-----CLDALRHPFLCGPRW  405 (667)
Q Consensus       389 pS-----a~elL~HPwf~~~~~  405 (667)
                      ++     ++|+++||||++..|
T Consensus       248 ~~~~~~~~~eil~Hp~f~~i~~  269 (337)
T d1o6la_         248 LGGGPSDAKEVMEHRFFLSINW  269 (337)
T ss_dssp             TTCSTTTHHHHHTSGGGTTCCH
T ss_pred             cccccccHHHHHcCcccccCCH
Confidence            94     999999999999875

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.4e-52  Score=451.09  Aligned_cols=256  Identities=16%  Similarity=0.184  Sum_probs=211.2

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      .+++|++++.||+|+||    +||+|+++.     +|+.||||++.+..     ......+|..+++.++   .++||||
T Consensus         2 slddy~i~~~lG~G~fg----~Vy~~~~~~-----t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~---~~~hpnI   69 (364)
T d1omwa3           2 TMNDFSVHRIIGRGGFG----EVYGCRKAD-----TGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVS---TGDCPFI   69 (364)
T ss_dssp             CSTTEEEEEEEEECSSC----EEEEEEETT-----TCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHS---SSCCTTB
T ss_pred             CHHhCeeeeEEecCCCe----EEEEEEECC-----CCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHh---cCCCCcE
Confidence            57899999999999999    999999998     89999999997532     2233456665555553   2369999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      |++++++.     +.+.+||||| ||++|+|.++|.+..         .++|                    ..++.|+.
T Consensus        70 v~l~~~~~-----~~~~~~ivmE-~~~gg~L~~~l~~~~---------~~~e--------------------~~~~~~~~  114 (364)
T d1omwa3          70 VCMSYAFH-----TPDKLSFILD-LMNGGDLHYHLSQHG---------VFSE--------------------ADMRFYAA  114 (364)
T ss_dssp             CCEEEEEE-----CSSEEEEEEC-CCCSCBHHHHHHHHC---------SCCH--------------------HHHHHHHH
T ss_pred             EEEEEEEE-----ECCEEEEEEE-ecCCCcHHHHHHhcc---------cccH--------------------HHHHHHHH
Confidence            99999999     7889999999 999999999998764         4555                    45788999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-------CCCCCCcccccCCCCCCchhhHHHHH
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-------GPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-------~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      ||+.||.|||++||+||||||+|||++. ++.+||+|||+|+.+...       ++.|+|||++.....|+.++||||||
T Consensus       115 qi~~aL~ylH~~~iiHrDlKP~NILl~~-~g~iKl~DFGla~~~~~~~~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlG  193 (364)
T d1omwa3         115 EIILGLEHMHNRFVVYRDLKPANILLDE-HGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLG  193 (364)
T ss_dssp             HHHHHHHHHHHTTEECCCCSGGGEEECS-SSCEEECCCTTCEECSSSCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHCCccceeeccceeEEcC-CCcEEEeeeceeeecCCCcccccccccccchhHHhhcCCCCCcccchhHHH
Confidence            9999999999999999999999999998 899999999999876543       37899999877777899999999999


Q ss_pred             HHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC-
Q 005958          312 FMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS-  390 (667)
Q Consensus       312 viLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS-  390 (667)
                      |++|||++|++||..            ................       ....+..+++++++||.+||++||++||| 
T Consensus       194 vilyemltG~~Pf~~------------~~~~~~~~~~~~~~~~-------~~~~~~~~s~~~~~li~~~L~~dP~~R~t~  254 (364)
T d1omwa3         194 CMLFKLLRGHSPFRQ------------HKTKDKHEIDRMTLTM-------AVELPDSFSPELRSLLEGLLQRDVNRRLGC  254 (364)
T ss_dssp             HHHHHHHHSSCSSCS------------SCSSCHHHHHHHSSSC-------CCCCCSSSCHHHHHHHHHHTCSSTTTSTTT
T ss_pred             HHHHHHHhCCCCCCC------------CCHHHHHHHHHhcccC-------CCCCCCCCCHHHHHHHHHHcccCHHHhCCC
Confidence            999999999999952            1222222222222221       12344578999999999999999999999 


Q ss_pred             ----HHHHHcCCCCCCCCCC
Q 005958          391 ----CLDALRHPFLCGPRWR  406 (667)
Q Consensus       391 ----a~elL~HPwf~~~~~~  406 (667)
                          |+|+++||||++++|.
T Consensus       255 ~~~~a~eil~Hp~f~~i~~~  274 (364)
T d1omwa3         255 LGRGAQEVKESPFFRSLDWQ  274 (364)
T ss_dssp             SSSTHHHHHTSGGGTTCCHH
T ss_pred             cccCHHHHHcCccccCCCHH
Confidence                7999999999998763

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.4e-52  Score=441.03  Aligned_cols=250  Identities=19%  Similarity=0.224  Sum_probs=198.5

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      +.|++.+.||+|+||    +||+|+++.     +++.||||++.+..   ....+.+|+.+|+++      +|||||+++
T Consensus         9 d~Y~~~~~lG~G~fg----~Vy~~~~~~-----~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l------~HpnIv~l~   73 (307)
T d1a06a_           9 DIYDFRDVLGTGAFS----EVILAEDKR-----TQKLVAIKCIAKKALEGKEGSMENEIAVLHKI------KHPNIVALD   73 (307)
T ss_dssp             GTEEEEEESBSGGGG----GEEEEEETT-----TCCEEEEEEEEC----------CHHHHHHHTC------CCTTBCCEE
T ss_pred             cceEEEEEEeeccCe----EEEEEEECC-----CCCEEEEEEEchHHhhhHHHHHHHHHHHHHhC------CCCCCCcEE
Confidence            679999999999999    999999998     89999999997632   234567899999999      499999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     +.+.+||||| ||+||+|.++|.+.+         .++|.                    .++.|+.||+.
T Consensus        74 ~~~~-----~~~~~~lvmE-~~~gg~L~~~l~~~~---------~l~e~--------------------~~~~~~~qi~~  118 (307)
T d1a06a_          74 DIYE-----SGGHLYLIMQ-LVSGGELFDRIVEKG---------FYTER--------------------DASRLIFQVLD  118 (307)
T ss_dssp             EEEE-----CSSEEEEEEC-CCCSCBHHHHHHTCS---------CCCHH--------------------HHHHHHHHHHH
T ss_pred             EEEE-----ECCEEEEEEe-ccCCCcHHHhhhccc---------CCCHH--------------------HHHHHHHHHHH
Confidence            9999     8899999999 999999999998754         56654                    56889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcC--CCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISP--VDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~--~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      ||+|||++||+||||||+|||+..  .++.+||+|||+|+.....        ++.|+|||++. +..|+.++|||||||
T Consensus       119 al~ylH~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~GT~~y~APE~~~-~~~~~~~~DiwSlGv  197 (307)
T d1a06a_         119 AVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLA-QKPYSKAVDCWSIGV  197 (307)
T ss_dssp             HHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCC------------------CTTSCHHHHT-TCCCCTHHHHHHHHH
T ss_pred             HHHhhhhceeeeEEecccceeecccCCCceEEEeccceeEEccCCCeeeeeeeCccccCcHHHc-CCCCCcHHHhhhhhH
Confidence            999999999999999999999963  3689999999999865433        37899999654 556999999999999


Q ss_pred             HHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHH
Q 005958          313 MMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCL  392 (667)
Q Consensus       313 iLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~  392 (667)
                      ++|||++|++||.            +.....+..   .+......   ...+..+.+++++++||.+||++||++|||++
T Consensus       198 ilyell~g~~Pf~------------~~~~~~~~~---~i~~~~~~---~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~  259 (307)
T d1a06a_         198 IAYILLCGYPPFY------------DENDAKLFE---QILKAEYE---FDSPYWDDISDSAKDFIRHLMEKDPEKRFTCE  259 (307)
T ss_dssp             HHHHHHHSSCSCC------------CSSHHHHHH---HHHTTCCC---CCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHH
T ss_pred             HHHHHHhCCCCCC------------CCCHHHHHH---HHhccCCC---CCCccccCCCHHHHHHHHHHccCCHhHCcCHH
Confidence            9999999999995            222222222   22222111   11234567899999999999999999999999


Q ss_pred             HHHcCCCCCCCC
Q 005958          393 DALRHPFLCGPR  404 (667)
Q Consensus       393 elL~HPwf~~~~  404 (667)
                      |+|+||||++..
T Consensus       260 eil~hp~~~~~~  271 (307)
T d1a06a_         260 QALQHPWIAGDT  271 (307)
T ss_dssp             HHHHSTTTTSSC
T ss_pred             HHhcCHhhCCCC
Confidence            999999998754

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-53  Score=440.64  Aligned_cols=249  Identities=17%  Similarity=0.204  Sum_probs=207.1

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      +.|++++.||+|+||    +||+|+++.     +++.||||++...  ...+.+.+|+++|++++      |||||++++
T Consensus        12 d~Y~i~~~iG~G~fg----~Vy~~~~~~-----~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~------HpnIv~l~~   76 (288)
T d2jfla1          12 DFWEIIGELGDGAFG----KVYKAQNKE-----TSVLAAAKVIDTKSEEELEDYMVEIDILASCD------HPNIVKLLD   76 (288)
T ss_dssp             GTEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEECSSSGGGGGTHHHHHHHHHCC------CTTBCCEEE
T ss_pred             cCeEEeEEEeeCCCc----EEEEEEECC-----CCeEEEEEEECcCCHHHHHHHHHHHHHHHhCC------CCCCCeEEE
Confidence            579999999999999    999999998     8999999999753  33356789999999994      999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++.     +.+.+||||| ||++|+|.+++.+.+        ..++|                    ..++.++.||+.|
T Consensus        77 ~~~-----~~~~~~lvmE-y~~~g~L~~~~~~~~--------~~l~e--------------------~~~~~i~~qi~~g  122 (288)
T d2jfla1          77 AFY-----YENNLWILIE-FCAGGAVDAVMLELE--------RPLTE--------------------SQIQVVCKQTLDA  122 (288)
T ss_dssp             EEE-----ETTEEEEEEE-CCTTEEHHHHHHHHT--------SCCCH--------------------HHHHHHHHHHHHH
T ss_pred             EEe-----eCCeEEEEEe-cCCCCcHHHHHHhcC--------CCCCH--------------------HHHHHHHHHHHHH
Confidence            999     7789999999 999999999987643        14665                    4568899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeeccccccc---------CCCCCCCCccccc----CCCCCCchhhHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFY---------EDGPNNSSPDSNM----DRRQMMIAFDMRCV  310 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~---------~~~~~Y~APE~l~----~~~~ys~ksDIWSL  310 (667)
                      |.|||++||+||||||+|||++. ++.+||+|||+|+...         .+++.|+|||++.    ....|+.++|||||
T Consensus       123 L~ylH~~~ivHrDiKp~NIll~~-~~~~Kl~DFG~a~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSl  201 (288)
T d2jfla1         123 LNYLHDNKIIHRDLKAGNILFTL-DGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSL  201 (288)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECT-TSCEEECCCTTCEECHHHHHHHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHH
T ss_pred             HHHHHHCCEEEeecChhheeECC-CCCEEEEechhhhccCCCcccccccccccccCCHHHHhhcccCCCCCChhhhHHHH
Confidence            99999999999999999999998 8999999999997542         2458899999764    34568999999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      ||++|||++|++||.+.            .+.+...   .+.....+    .+.....+++++++||.+||++||++|||
T Consensus       202 Gvilyemltg~~Pf~~~------------~~~~~~~---~i~~~~~~----~~~~~~~~s~~~~~li~~~L~~dp~~R~t  262 (288)
T d2jfla1         202 GITLIEMAEIEPPHHEL------------NPMRVLL---KIAKSEPP----TLAQPSRWSSNFKDFLKKCLEKNVDARWT  262 (288)
T ss_dssp             HHHHHHHHHSSCTTTTS------------CGGGHHH---HHHHSCCC----CCSSGGGSCHHHHHHHHHHSCSSTTTSCC
T ss_pred             HHHHHHHhhCCCCCCCC------------CHHHHHH---HHHcCCCC----CCCccccCCHHHHHHHHHHccCChhHCcC
Confidence            99999999999999632            2222211   22222111    23344578999999999999999999999


Q ss_pred             HHHHHcCCCCCCC
Q 005958          391 CLDALRHPFLCGP  403 (667)
Q Consensus       391 a~elL~HPwf~~~  403 (667)
                      ++|+|+||||+..
T Consensus       263 ~~ell~hp~~~~~  275 (288)
T d2jfla1         263 TSQLLQHPFVTVD  275 (288)
T ss_dssp             HHHHTTSGGGCCC
T ss_pred             HHHHhcCcccCCC
Confidence            9999999999753

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-53  Score=451.18  Aligned_cols=265  Identities=16%  Similarity=0.208  Sum_probs=207.9

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      +..++|++++.||+|+||    +||+|+++.     +|+.||+|+++..   ...+.+.+|+.+|+++      +|||||
T Consensus         3 l~~d~y~~~~~iG~G~fg----~V~~~~~~~-----~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l------~HpnIv   67 (322)
T d1s9ja_           3 LKDDDFEKISELGAGNGG----VVFKVSHKP-----SGLVMARKLIHLEIKPAIRNQIIRELQVLHEC------NSPYIV   67 (322)
T ss_dssp             CCGGGEEEEEEEECCSSC----CEEEEEETT-----TTEEEEEEEEECCCCTTHHHHHHHHGGGGGGC------CCTTBC
T ss_pred             CCccCCEEEEEEecCCCe----EEEEEEECC-----CCcEEEEEEEChhhCHHHHHHHHHHHHHHHhC------CCCCCC
Confidence            445889999999999999    999999998     8999999999753   3345678999999999      499999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      +++++|.     +.+.+||||| ||++|+|.+++.+.+         .++|                    ..++.++.|
T Consensus        68 ~l~~~~~-----~~~~~~iVmE-y~~gg~L~~~l~~~~---------~l~~--------------------~~~~~~~~q  112 (322)
T d1s9ja_          68 GFYGAFY-----SDGEISICME-HMDGGSLDQVLKKAG---------RIPE--------------------QILGKVSIA  112 (322)
T ss_dssp             CEEEEEE-----CSSEEEEEEE-CCTTEEHHHHHHHHS---------SCCH--------------------HHHHHHHHH
T ss_pred             cEEEEEE-----ECCEEEEEEE-cCCCCcHHHHHhhcC---------CCCH--------------------HHHHHHHHH
Confidence            9999999     7889999999 999999999998764         5565                    457889999


Q ss_pred             HHHHHHHHHH-CCCcccCCCCCcEEEcCCCCeEEEeeeccccccc-------CCCCCCCCcccccCCCCCCchhhHHHHH
Q 005958          240 LLIGVNYLHS-HGLAHTELRLENVHISPVDRHIKVGILGNAADFY-------EDGPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       240 Il~aL~yLHs-~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~-------~~~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      |+.||.|||+ +||+||||||+|||++. ++.+||+|||+|+.+.       .+++.|+|||++.+ ..|+.++||||+|
T Consensus       113 il~aL~yLH~~~~IiHRDiKP~NILl~~-~~~vkl~DFGla~~~~~~~~~~~~GT~~Y~APEvl~~-~~y~~~~DiWSlG  190 (322)
T d1s9ja_         113 VIKGLTYLREKHKIMHRDVKPSNILVNS-RGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQG-THYSVQSDIWSMG  190 (322)
T ss_dssp             HHHHHHHHHHHHCCCCSCCSGGGEEECT-TCCEEECCCCCCHHHHHHTC---CCSSCCCCHHHHHC-SCCCTTHHHHHHH
T ss_pred             HHHHHHHHHHhCCEEccccCHHHeeECC-CCCEEEeeCCCccccCCCccccccCCccccCchHHcC-CCCCcHHHHHHHH
Confidence            9999999997 59999999999999998 8999999999998653       23488999997665 5699999999999


Q ss_pred             HHHHHHHhCCCCChhhh----hhhhhhhccCCChh-----------------------HHHHHHHHHhccCCCCCCCCcc
Q 005958          312 FMMAKMVLRELMDPLIF----TKFKSFLTKGIDPS-----------------------CLREFLLQVLNRNSSSGNTGFQ  364 (667)
Q Consensus       312 viLyemltG~~PF~~~~----~~~~~~~~~g~~~~-----------------------~l~~~~~~~~~~~~~~~~~~~~  364 (667)
                      |++|||++|+.||....    +........|....                       ...+.........++.     .
T Consensus       191 vil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  265 (322)
T d1s9ja_         191 LSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPK-----L  265 (322)
T ss_dssp             HHHHHHHHSSCCSSCCCTTHHHHHC------------------------------CCCCHHHHHHHHHTSCCCC-----C
T ss_pred             HHHHHHHHCCCCCCCCCHHHHHHHHHHHhcCCcccCCcccccccccccccccccccchhHHHHHhhhhccCCcc-----C
Confidence            99999999999996321    11111111111110                       0111111111111110     0


Q ss_pred             cccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          365 ILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       365 ~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      .....|++++|||.+||++||++||||+|+|+||||++.+
T Consensus       266 ~~~~~s~~~~dli~~~L~~dP~~R~ta~e~L~Hpf~~~~~  305 (322)
T d1s9ja_         266 PSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSD  305 (322)
T ss_dssp             CBTTBCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHHHH
T ss_pred             ccccCCHHHHHHHHHHcCCChhHCcCHHHHhhCHhhCcCC
Confidence            1124688999999999999999999999999999998755

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=2.7e-52  Score=446.45  Aligned_cols=257  Identities=16%  Similarity=0.192  Sum_probs=212.0

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch--hhHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      .+++|++++.||+|+||    +||+|+++.     +|+.||||++...  ...+.+.+|+.+|++++      |||||++
T Consensus        24 il~~Y~i~~~lG~G~fg----~Vy~~~~~~-----~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~------HpnIv~~   88 (350)
T d1koaa2          24 VLDHYDIHEELGTGAFG----VVHRVTERA-----TGNNFAAKFVMTPHESDKETVRKEIQTMSVLR------HPTLVNL   88 (350)
T ss_dssp             GGGTEEEEEEEEEETTE----EEEEEEETT-----TTEEEEEEEECCCSHHHHHHHHHHHHHHHHTC------CTTBCCE
T ss_pred             CccCeEEEEEEecCcCe----EEEEEEECC-----CCCEEEEEEEcccchhhHHHHHHHHHHHHhCC------CCCCCcE
Confidence            35899999999999999    999999998     8999999999763  33456789999999995      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     +.+.+||||| ||++|+|.+++.+..        ..++|                    ..++.|+.||+
T Consensus        89 ~~~~~-----~~~~~~ivmE-~~~gg~L~~~l~~~~--------~~l~e--------------------~~~~~i~~qi~  134 (350)
T d1koaa2          89 HDAFE-----DDNEMVMIYE-FMSGGELFEKVADEH--------NKMSE--------------------DEAVEYMRQVC  134 (350)
T ss_dssp             EEEEE-----ETTEEEEEEC-CCCSCBHHHHHTCTT--------SCBCH--------------------HHHHHHHHHHH
T ss_pred             EEEEE-----ECCEEEEEEE-cCCCCCHHHHHHhhc--------CCCCH--------------------HHHHHHHHHHH
Confidence            99999     7789999999 999999999996432        24665                    45788999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcC-CCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISP-VDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~-~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      .||+|||++|||||||||+|||++. .++.+||+|||+|+.+...        ++.|||||++. +..|+.++|||||||
T Consensus       135 ~aL~ylH~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~~~~~gT~~Y~aPEv~~-~~~~~~~~DiwSlGv  213 (350)
T d1koaa2         135 KGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAE-GKPVGYYTDMWSVGV  213 (350)
T ss_dssp             HHHHHHHHTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTSCEEEECSCTTTCCHHHHH-TCCBCHHHHHHHHHH
T ss_pred             HHHHHHHhcCCeeeeechhHeeeccCCCCeEEEeecchheecccccccceecCcccccCHHHHc-CCCCChhHhhhhhhH
Confidence            9999999999999999999999974 2578999999999876543        38899999655 456899999999999


Q ss_pred             HHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHH
Q 005958          313 MMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCL  392 (667)
Q Consensus       313 iLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~  392 (667)
                      ++|||++|++||.            +.+.......   +......   ........+++++++||.+||++||++|||++
T Consensus       214 ilyell~G~~Pf~------------~~~~~~~~~~---i~~~~~~---~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~  275 (350)
T d1koaa2         214 LSYILLSGLSPFG------------GENDDETLRN---VKSCDWN---MDDSAFSGISEDGKDFIRKLLLADPNTRMTIH  275 (350)
T ss_dssp             HHHHHHHSSCSSC------------CSSHHHHHHH---HHHTCCC---SCCGGGGGCCHHHHHHHHHHCCSSGGGSCCHH
T ss_pred             HHHHHHhCCCCCC------------CCCHHHHHHH---HHhCCCC---CCcccccCCCHHHHHHHHHHccCChhHCcCHH
Confidence            9999999999995            3333322222   2222111   11234457899999999999999999999999


Q ss_pred             HHHcCCCCCCCCCCCC
Q 005958          393 DALRHPFLCGPRWRVD  408 (667)
Q Consensus       393 elL~HPwf~~~~~~~~  408 (667)
                      |+|+||||++..++..
T Consensus       276 eil~hp~~~~~~~~~~  291 (350)
T d1koaa2         276 QALEHPWLTPGNAPGR  291 (350)
T ss_dssp             HHHHSTTTSCTTCCSC
T ss_pred             HHhcCcccCCCCCCCc
Confidence            9999999998775443

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-52  Score=429.77  Aligned_cols=247  Identities=19%  Similarity=0.251  Sum_probs=200.7

Q ss_pred             eEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           88 FKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        88 y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      |++.++||+|+||    +||+|+++.     +++.||+|++....    ..+.+.+|+++|++++      |||||++++
T Consensus        11 ~~~~~~iG~G~fg----~Vy~~~~~~-----~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~------HpnIv~~~~   75 (270)
T d1t4ha_          11 LKFDIEIGRGSFK----TVYKGLDTE-----TTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQ------HPNIVRFYD   75 (270)
T ss_dssp             EEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCC------CTTBCCEEE
T ss_pred             EEeeeEEecCcCc----EEEEEEECC-----CCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCC------CCCeeeEEE
Confidence            4788899999999    999999998     89999999987532    2345789999999994      999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++.... .....+||||| ||++|+|.+++.+..         .+++                    ..++.|+.||+.|
T Consensus        76 ~~~~~~-~~~~~~~ivmE-~~~~g~L~~~l~~~~---------~~~~--------------------~~~~~~~~qi~~g  124 (270)
T d1t4ha_          76 SWESTV-KGKKCIVLVTE-LMTSGTLKTYLKRFK---------VMKI--------------------KVLRSWCRQILKG  124 (270)
T ss_dssp             EEEEES-SSCEEEEEEEE-CCCSCBHHHHHHHHS---------SCCH--------------------HHHHHHHHHHHHH
T ss_pred             EEeecc-ccCCEEEEEEe-CCCCCcHHHHHhccc---------cccH--------------------HHHHHHHHHHHHH
Confidence            997431 14567999999 999999999998754         4555                    4567899999999


Q ss_pred             HHHHHHCC--CcccCCCCCcEEEcCCCCeEEEeeecccccccC-------CCCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          244 VNYLHSHG--LAHTELRLENVHISPVDRHIKVGILGNAADFYE-------DGPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       244 L~yLHs~g--IvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-------~~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      |+|||++|  |+||||||+|||++..++.+||+|||+|+....       +++.|+|||++.  ..|+.++|||||||++
T Consensus       125 l~yLH~~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~~~~~~~~~GT~~Y~aPE~~~--~~~~~~~DIwSlGvil  202 (270)
T d1t4ha_         125 LQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYE--EKYDESVDVYAFGMCM  202 (270)
T ss_dssp             HHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGG--TCCCTHHHHHHHHHHH
T ss_pred             HHHHHHCCCCEEeCCcChhhceeeCCCCCEEEeecCcceeccCCccCCcccCccccCHHHhC--CCCCCcCchhhHHHHH
Confidence            99999999  999999999999975478999999999975443       237899999653  3599999999999999


Q ss_pred             HHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHH
Q 005958          315 AKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDA  394 (667)
Q Consensus       315 yemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~el  394 (667)
                      |||++|++||.+.           .+...+..   .+.....     ........++++++||.+||++||++|||++|+
T Consensus       203 yel~~g~~Pf~~~-----------~~~~~~~~---~i~~~~~-----~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~el  263 (270)
T d1t4ha_         203 LEMATSEYPYSEC-----------QNAAQIYR---RVTSGVK-----PASFDKVAIPEVKEIIEGCIRQNKDERYSIKDL  263 (270)
T ss_dssp             HHHHHSSCTTTTC-----------SSHHHHHH---HHTTTCC-----CGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred             HHHHHCCCCCCCc-----------ccHHHHHH---HHHcCCC-----CcccCccCCHHHHHHHHHHccCCHhHCcCHHHH
Confidence            9999999999532           11222222   2221111     122345678999999999999999999999999


Q ss_pred             HcCCCCC
Q 005958          395 LRHPFLC  401 (667)
Q Consensus       395 L~HPwf~  401 (667)
                      |+||||+
T Consensus       264 l~Hp~fk  270 (270)
T d1t4ha_         264 LNHAFFQ  270 (270)
T ss_dssp             HTSGGGC
T ss_pred             hCCcccC
Confidence            9999996

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-52  Score=436.55  Aligned_cols=252  Identities=19%  Similarity=0.227  Sum_probs=206.3

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--------hHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--------AQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--------~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      ++|++++.||+|+||    +||+|+++.     +|+.||||++++..        ..+.+.+|+.+|++++      |||
T Consensus        10 d~Y~~~~~lG~G~fg----~Vy~~~~~~-----~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~------Hpn   74 (293)
T d1jksa_          10 DYYDTGEELGSGQFA----VVKKCREKS-----TGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ------HPN   74 (293)
T ss_dssp             GTEEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCC------CTT
T ss_pred             cCEEEeEEEecCCCe----EEEEEEECC-----CCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCC------CCC
Confidence            679999999999999    999999998     89999999997521        2356789999999994      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      ||++++++.     +.+.+||||| ||++|+|.++|.+.+         .++|                    ..++.++
T Consensus        75 Iv~~~~~~~-----~~~~~~iv~E-~~~gg~L~~~i~~~~---------~l~~--------------------~~~~~~~  119 (293)
T d1jksa_          75 VITLHEVYE-----NKTDVILILE-LVAGGELFDFLAEKE---------SLTE--------------------EEATEFL  119 (293)
T ss_dssp             BCCEEEEEE-----CSSEEEEEEE-CCCSCBHHHHHHHHS---------SCCH--------------------HHHHHHH
T ss_pred             CCcEEEEEE-----ECCEEEEEEE-cCCCccccchhcccc---------ccch--------------------hHHHHHH
Confidence            999999999     8899999999 999999999998764         5665                    4578899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCC---CeEEEeeecccccccCCC--------CCCCCcccccCCCCCCchhh
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVD---RHIKVGILGNAADFYEDG--------PNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~---~~vKL~DFGlA~~~~~~~--------~~Y~APE~l~~~~~ys~ksD  306 (667)
                      .||+.||+|||++||+||||||+|||++..+   ..+||+|||+|.......        +.|+|||++. ...|+.++|
T Consensus       120 ~qi~~al~yLH~~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~~~~~~~~~~~t~~y~APE~~~-~~~~~~~~D  198 (293)
T d1jksa_         120 KQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVN-YEPLGLEAD  198 (293)
T ss_dssp             HHHHHHHHHHHHTTEECCCCSGGGEEESCSSSSSCCEEECCCTTCEECTTSCBCSCCCCCGGGCCHHHHT-TCCBCTHHH
T ss_pred             HHHHHHHHhhhhcceeecccccceEEEecCCCcccceEecchhhhhhcCCCccccccCCCCcccCHHHHc-CCCCCCccc
Confidence            9999999999999999999999999998722   259999999998765432        6799999554 556999999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          307 MRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       307 IWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      |||+||++|||++|++||.            +.+..+....   +......   ......+.+++++++||.+||+.||+
T Consensus       199 iwSlGvilyell~g~~Pf~------------~~~~~~~~~~---i~~~~~~---~~~~~~~~~s~~~~~li~~~L~~dP~  260 (293)
T d1jksa_         199 MWSIGVITYILLSGASPFL------------GDTKQETLAN---VSAVNYE---FEDEYFSNTSALAKDFIRRLLVKDPK  260 (293)
T ss_dssp             HHHHHHHHHHHHHSSCSSC------------CSSHHHHHHH---HHTTCCC---CCHHHHTTSCHHHHHHHHTTSCSSGG
T ss_pred             chhhhHHHHHHHcCCCCCC------------CCCHHHHHHH---HHhcCCC---CCchhcCCCCHHHHHHHHHHccCChh
Confidence            9999999999999999995            3233222222   2221111   11233457889999999999999999


Q ss_pred             CCCCHHHHHcCCCCCCCCCC
Q 005958          387 KRISCLDALRHPFLCGPRWR  406 (667)
Q Consensus       387 kRpSa~elL~HPwf~~~~~~  406 (667)
                      +|||++|+|+||||++..|.
T Consensus       261 ~R~s~~eil~hp~~~~~~~~  280 (293)
T d1jksa_         261 KRMTIQDSLQHPWIKPKDTQ  280 (293)
T ss_dssp             GSCCHHHHHHSTTTCC----
T ss_pred             HCcCHHHHhcCcccCCCChh
Confidence            99999999999999987653

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-53  Score=435.88  Aligned_cols=249  Identities=17%  Similarity=0.211  Sum_probs=195.7

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      .++|++++.||+|+||    +||+|+++.     +|+.||||++....    ..+.+.+|+++|+++      +|||||+
T Consensus         3 ~edy~~~~~iG~G~fg----~Vy~~~~~~-----~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l------~HpnIv~   67 (269)
T d2java1           3 AEDYEVLYTIGTGSYG----RCQKIRRKS-----DGKILVWKELDYGSMTEAEKQMLVSEVNLLREL------KHPNIVR   67 (269)
T ss_dssp             GGGEEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSC------CCTTBCC
T ss_pred             chhCEEeEEEecCCCe----EEEEEEECC-----CCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHC------CCCCEee
Confidence            4789999999999999    999999998     89999999997532    234568999999999      4999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.+.   ..+.+||||| ||++|+|.+++.+...     ....++|                    ..++.++.||
T Consensus        68 ~~~~~~~~---~~~~~~ivmE-y~~~g~L~~~i~~~~~-----~~~~l~e--------------------~~~~~i~~qi  118 (269)
T d2java1          68 YYDRIIDR---TNTTLYIVME-YCEGGDLASVITKGTK-----ERQYLDE--------------------EFVLRVMTQL  118 (269)
T ss_dssp             EEEEEEC-------CEEEEEE-CCTTEEHHHHHHHHHH-----HTCCCCH--------------------HHHHHHHHHH
T ss_pred             EEEEEEeC---CCCEEEEEEe-cCCCCcHHHHHHhccc-----cCCCCCH--------------------HHHHHHHHHH
Confidence            99999733   4667999999 9999999999975320     1124555                    4578899999


Q ss_pred             HHHHHHHHHCC-----CcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhh
Q 005958          241 LIGVNYLHSHG-----LAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       241 l~aL~yLHs~g-----IvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksD  306 (667)
                      +.||+|||++|     |+||||||+|||++. ++.+||+|||+|+.+...         ++.|+|||++ ....|+.++|
T Consensus       119 ~~al~ylH~~~~~~~~IiHrDiKp~NIll~~-~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l-~~~~~~~~~D  196 (269)
T d2java1         119 TLALKECHRRSDGGHTVLHRDLKPANVFLDG-KQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQM-NRMSYNEKSD  196 (269)
T ss_dssp             HHHHHHHHHHCC---------CCGGGEEECT-TSCEEECCHHHHHHC-----------CCCSCCCHHHH-TTCCCCHHHH
T ss_pred             HHHHHHHHHhcCCCCCEEeCcCchhhcCcCC-CCcEEEeeccceeecccCCCccccCCCCcccCCHHHH-cCCCCChHHH
Confidence            99999999976     999999999999998 899999999999865432         3789999955 5566999999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          307 MRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       307 IWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      ||||||++|||++|++||.            +.+..++...+   .....+      ..+..+++++++||.+||+.||+
T Consensus       197 IwSlGvilyel~tg~~Pf~------------~~~~~~~~~~i---~~~~~~------~~~~~~s~~l~~li~~~L~~dp~  255 (269)
T d2java1         197 IWSLGCLLYELCALMPPFT------------AFSQKELAGKI---REGKFR------RIPYRYSDELNEIITRMLNLKDY  255 (269)
T ss_dssp             HHHHHHHHHHHHHSSCSCC------------CSSHHHHHHHH---HHTCCC------CCCTTSCHHHHHHHHHHTCSSGG
T ss_pred             HHhhCHHHHHHhhCCCCCC------------CCCHHHHHHHH---HcCCCC------CCCcccCHHHHHHHHHHcCCChh
Confidence            9999999999999999995            33333332222   222111      23356889999999999999999


Q ss_pred             CCCCHHHHHcCCCC
Q 005958          387 KRISCLDALRHPFL  400 (667)
Q Consensus       387 kRpSa~elL~HPwf  400 (667)
                      +|||++|+|+|||+
T Consensus       256 ~Rps~~ell~hp~i  269 (269)
T d2java1         256 HRPSVEEILENPLI  269 (269)
T ss_dssp             GSCCHHHHHTSTTC
T ss_pred             HCcCHHHHHhCCcC
Confidence            99999999999996

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-52  Score=440.62  Aligned_cols=250  Identities=17%  Similarity=0.255  Sum_probs=211.6

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      |.+++|++++.||+|+||    +||+|+++.     +|+.||||++++..     ..+.+.+|+.+|+.++      |||
T Consensus         1 ~sl~dy~i~~~lG~G~fg----~Vy~a~~~~-----~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~------Hpn   65 (316)
T d1fota_           1 YSLQDFQILRTLGTGSFG----RVHLIRSRH-----NGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVT------HPF   65 (316)
T ss_dssp             CCGGGEEEEEEEEECSSC----EEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCC------BTT
T ss_pred             CchhHeEEEEEEecCcCc----EEEEEEECC-----CCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhcc------CcC
Confidence            457899999999999999    999999998     89999999997532     2356789999999994      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      ||++++++.     +.+.+|+||| ||+||+|.+++....         .+++                    ..++.++
T Consensus        66 Iv~~~~~~~-----~~~~~~ivmE-~~~gg~l~~~~~~~~---------~~~~--------------------~~~~~~~  110 (316)
T d1fota_          66 IIRMWGTFQ-----DAQQIFMIMD-YIEGGELFSLLRKSQ---------RFPN--------------------PVAKFYA  110 (316)
T ss_dssp             BCCEEEEEE-----CSSEEEEEEC-CCCSCBHHHHHHHTS---------SCCH--------------------HHHHHHH
T ss_pred             hhheeeeEe-----eCCeeeeEee-ecCCccccccccccc---------cccc--------------------cHHHHHH
Confidence            999999999     8899999999 999999999998765         4454                    4567899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC------CCCCCCcccccCCCCCCchhhHHHHH
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED------GPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      .||+.||+|||++||+||||||+|||++. ++.+||+|||+|+.....      ++.|+|||++ .+..|+.++||||||
T Consensus       111 ~qi~~al~~lH~~~iiHrDiKp~NILl~~-~g~vkL~DFG~a~~~~~~~~~~~Gt~~Y~APE~l-~~~~y~~~~DiwSlG  188 (316)
T d1fota_         111 AEVCLALEYLHSKDIIYRDLKPENILLDK-NGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVV-STKPYNKSIDWWSFG  188 (316)
T ss_dssp             HHHHHHHHHHHTTTEECCCCCGGGEEECT-TSCEEECCCSSCEECSSCBCCCCSCTTTCCHHHH-TTCCBCTTHHHHHHH
T ss_pred             HHHHHhhhhhccCcEEccccCchheeEcC-CCCEEEecCccceEeccccccccCcccccCHHHH-cCCCCCchhhccccc
Confidence            99999999999999999999999999998 899999999999876433      3789999955 455699999999999


Q ss_pred             HHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC--
Q 005958          312 FMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI--  389 (667)
Q Consensus       312 viLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp--  389 (667)
                      |++|||++|++||.            +.+...+.   ..+....       ...++.+++++++||.+||++||.+|+  
T Consensus       189 vilyemltG~~Pf~------------~~~~~~~~---~~i~~~~-------~~~p~~~s~~~~~li~~~L~~dp~~R~~~  246 (316)
T d1fota_         189 ILIYEMLAGYTPFY------------DSNTMKTY---EKILNAE-------LRFPPFFNEDVKDLLSRLITRDLSQRLGN  246 (316)
T ss_dssp             HHHHHHHHSSCTTC------------CSSHHHHH---HHHHHCC-------CCCCTTSCHHHHHHHHHHTCSCTTTCTTS
T ss_pred             hhHHHHHhCCCCCC------------CcCHHHHH---HHHHcCC-------CCCCCCCCHHHHHHHHHHhhhCHHhcccc
Confidence            99999999999995            22332222   2222221       223456889999999999999999996  


Q ss_pred             ---CHHHHHcCCCCCCCCCC
Q 005958          390 ---SCLDALRHPFLCGPRWR  406 (667)
Q Consensus       390 ---Sa~elL~HPwf~~~~~~  406 (667)
                         |++++|+||||+++.|.
T Consensus       247 ~r~t~~~il~Hp~f~~i~~~  266 (316)
T d1fota_         247 LQNGTEDVKNHPWFKEVVWE  266 (316)
T ss_dssp             STTTTHHHHTSGGGSSCCHH
T ss_pred             chhhHHHHHcCcccccCCHH
Confidence               99999999999998863

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=3.5e-52  Score=445.90  Aligned_cols=252  Identities=19%  Similarity=0.258  Sum_probs=209.0

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      .++|++++.||+|+||    +||+|+++.     +|+.||||+++...  ..+.+.+|+++|++++      |||||+++
T Consensus        28 ~d~Y~i~~~lG~G~fg----~V~~a~~~~-----~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~------HpnIv~~~   92 (352)
T d1koba_          28 YDYYDILEELGSGAFG----VVHRCVEKA-----TGRVFVAKFINTPYPLDKYTVKNEISIMNQLH------HPKLINLH   92 (352)
T ss_dssp             GGTEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEECCSHHHHHHHHHHHHHHTTCC------STTBCCEE
T ss_pred             ccceEEEEEEecCCCe----EEEEEEECC-----CCCEEEEEEECCcchhHHHHHHHHHHHHHhCC------CCCCCcEE
Confidence            4789999999999999    999999998     89999999997632  3456689999999994      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      ++|.     +.+.+||||| ||++|+|.+++...+        .+|+|                    ..++.|+.||+.
T Consensus        93 ~~~~-----~~~~~~ivmE-~~~gg~L~~~~~~~~--------~~l~e--------------------~~~~~i~~qi~~  138 (352)
T d1koba_          93 DAFE-----DKYEMVLILE-FLSGGELFDRIAAED--------YKMSE--------------------AEVINYMRQACE  138 (352)
T ss_dssp             EEEE-----CSSEEEEEEE-CCCCCBHHHHTTCTT--------CCBCH--------------------HHHHHHHHHHHH
T ss_pred             EEEE-----ECCEEEEEEE-cCCCChHHHHHHhcC--------CCCCH--------------------HHHHHHHHHHHH
Confidence            9999     8899999999 999999999876543        24666                    457889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcC-CCCeEEEeeecccccccCCC--------CCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISP-VDRHIKVGILGNAADFYEDG--------PNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~-~~~~vKL~DFGlA~~~~~~~--------~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      ||+|||++||+||||||+|||++. .++.+||+|||+|..+....        +.|+|||++ .+..|+.++|||||||+
T Consensus       139 aL~ylH~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DiwSlGvi  217 (352)
T d1koba_         139 GLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIV-DREPVGFYTDMWAIGVL  217 (352)
T ss_dssp             HHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCEEEECSSGGGCCHHHH-TTCCBCHHHHHHHHHHH
T ss_pred             HHHHHHHCCeeecccccccccccccCCCeEEEeecccceecCCCCceeeccCcccccCHHHH-cCCCCCCccchHHHHHH
Confidence            999999999999999999999983 36899999999998765443        789999955 45669999999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          314 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       314 LyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      +|||++|++||.            +.........   +......   ........+++++++||.+||++||++|||++|
T Consensus       218 lyelltG~~Pf~------------~~~~~~~~~~---i~~~~~~---~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e  279 (352)
T d1koba_         218 GYVLLSGLSPFA------------GEDDLETLQN---VKRCDWE---FDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHD  279 (352)
T ss_dssp             HHHHHHSCCSSC------------CSSHHHHHHH---HHHCCCC---CCSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHH
T ss_pred             HHHHHhCCCCCC------------CCCHHHHHHH---HHhCCCC---CCcccccCCCHHHHHHHHHHccCChhHCcCHHH
Confidence            999999999995            3233222222   2222111   112234578999999999999999999999999


Q ss_pred             HHcCCCCCCCC
Q 005958          394 ALRHPFLCGPR  404 (667)
Q Consensus       394 lL~HPwf~~~~  404 (667)
                      +|+||||++..
T Consensus       280 il~Hp~~~~~~  290 (352)
T d1koba_         280 ALEHPWLKGDH  290 (352)
T ss_dssp             HHTSTTTSSCC
T ss_pred             HhcCHhhCCCc
Confidence            99999998754

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=1.8e-51  Score=426.34  Aligned_cols=250  Identities=21%  Similarity=0.265  Sum_probs=209.7

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----------hHHHHHHHHHHHHHHhhccCC
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----------AQRRGRRAIEVLKKLVRRRLM  153 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----------~~~~~~rEi~iL~~L~~~~~~  153 (667)
                      .++|++.+.||+|+||    +||+|+++.     +++.||||++.+..           ..+.+.+|+.+|++++     
T Consensus         2 ~~~y~~~~~iG~G~~g----~V~~~~~~~-----~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-----   67 (277)
T d1phka_           2 YENYEPKEILGRGVSS----VVRRCIHKP-----TCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVS-----   67 (277)
T ss_dssp             TTTEEEEEEEEECSSE----EEEEEEETT-----TTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred             cccCEEceEEecCcCe----EEEEEEECC-----CCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhc-----
Confidence            3789999999999999    999999987     89999999997521           1235689999999996     


Q ss_pred             CCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHH
Q 005958          154 YHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLI  233 (667)
Q Consensus       154 ~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i  233 (667)
                      .||||+++++++.     +++.+||||| ||++|||.++|+.++         .++|                    ..+
T Consensus        68 ~hpnIv~~~~~~~-----~~~~~~ivmE-~~~~g~L~~~l~~~~---------~l~e--------------------~~~  112 (277)
T d1phka_          68 GHPNIIQLKDTYE-----TNTFFFLVFD-LMKKGELFDYLTEKV---------TLSE--------------------KET  112 (277)
T ss_dssp             TCTTBCCEEEEEE-----CSSEEEEEEE-CCTTCBHHHHHHHHS---------SCCH--------------------HHH
T ss_pred             CCCCeEEEEeecc-----cCcceEEEEE-cCCCchHHHHHHhcC---------CCCH--------------------HHH
Confidence            5999999999999     8899999999 999999999998765         5665                    457


Q ss_pred             HHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCccccc-----CCCC
Q 005958          234 RLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNM-----DRRQ  300 (667)
Q Consensus       234 ~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~-----~~~~  300 (667)
                      +.|+.||+.||+|||++||+||||||+|||++. ++.+||+|||+|+.+...        ++.|+|||.+.     ....
T Consensus       113 ~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~-~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~~PE~~~~~~~~~~~~  191 (277)
T d1phka_         113 RKIMRALLEVICALHKLNIVHRDLKPENILLDD-DMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPG  191 (277)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECSCCSGGGEEECT-TCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCC
T ss_pred             HHHHHHHHHHHHHHHHcCCcccccccceEEEcC-CCCeEEccchheeEccCCCceeeeeccCCCCCHHHhhccccccCCC
Confidence            889999999999999999999999999999998 899999999999876543        26799999765     3456


Q ss_pred             CCchhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHh
Q 005958          301 MMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLL  380 (667)
Q Consensus       301 ys~ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~  380 (667)
                      |+.++||||+||++|||++|++||.            +.+.......   +......   ...+...++|+++++||.+|
T Consensus       192 ~~~~~DiwslGvilyeml~g~~Pf~------------~~~~~~~~~~---i~~~~~~---~~~~~~~~~s~~~~~li~~~  253 (277)
T d1phka_         192 YGKEVDMWSTGVIMYTLLAGSPPFW------------HRKQMLMLRM---IMSGNYQ---FGSPEWDDYSDTVKDLVSRF  253 (277)
T ss_dssp             BCTHHHHHHHHHHHHHHHHSSCSSC------------CSSHHHHHHH---HHHTCCC---CCTTTGGGSCHHHHHHHHHH
T ss_pred             CCchheEcccchhhhhhccCCCCCC------------CCCHHHHHHH---HHhCCCC---CCCcccccCCHHHHHHHHHH
Confidence            7899999999999999999999995            3333332222   2222111   12234457899999999999


Q ss_pred             hhcCcCCCCCHHHHHcCCCCCC
Q 005958          381 LATKPSKRISCLDALRHPFLCG  402 (667)
Q Consensus       381 L~~DP~kRpSa~elL~HPwf~~  402 (667)
                      |++||++|||++|+|+||||++
T Consensus       254 L~~~p~~R~s~~eil~h~~~~~  275 (277)
T d1phka_         254 LVVQPQKRYTAEEALAHPFFQQ  275 (277)
T ss_dssp             CCSSGGGSCCHHHHTTSGGGCT
T ss_pred             ccCChhHCcCHHHHHcCHHHHH
Confidence            9999999999999999999986

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.4e-52  Score=432.11  Aligned_cols=267  Identities=21%  Similarity=0.227  Sum_probs=202.3

Q ss_pred             EEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-------HHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           90 ILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-------QRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        90 i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-------~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      .++.||+|+||    +||+|+++.     +|+.||||+++....       .+.+.+|+++|++++      |||||+++
T Consensus         2 ~l~~lG~G~fg----~Vy~~~~~~-----~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~------hpnIv~~~   66 (299)
T d1ua2a_           2 KLDFLGEGQFA----TVYKARDKN-----TNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELS------HPNIIGLL   66 (299)
T ss_dssp             EEEEEEEETTE----EEEEEECSS-----CCSEEEEEEC------------CTHHHHHHHHHHHCC------CTTBCCEE
T ss_pred             cceEeccCcCe----EEEEEEECC-----CCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCC------CCCEeEEE
Confidence            57899999999    999999987     899999999875321       235689999999994      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     .++.+||||| |+.++++..++....         .++|                    ..++.+++||+.
T Consensus        67 ~~~~-----~~~~~~ivmE-~~~~~~~~~~~~~~~---------~l~~--------------------~~~~~~~~qil~  111 (299)
T d1ua2a_          67 DAFG-----HKSNISLVFD-FMETDLEVIIKDNSL---------VLTP--------------------SHIKAYMLMTLQ  111 (299)
T ss_dssp             EEEC-----CTTCCEEEEE-CCSEEHHHHHTTCCS---------SCCS--------------------SHHHHHHHHHHH
T ss_pred             eeec-----cCCceeehhh-hhcchHHhhhhhccc---------CCCH--------------------HHHHHHHHHHHH
Confidence            9998     7788999999 999966665554332         4554                    357889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      ||+|||++||+||||||+|||++. ++.+||+|||+|+....         +++.|+|||++.....|+.++|||||||+
T Consensus       112 aL~~lH~~~iiHrDiKp~NIli~~-~~~~KL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvi  190 (299)
T d1ua2a_         112 GLEYLHQHWILHRDLKPNNLLLDE-NGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCI  190 (299)
T ss_dssp             HHHHHHHTTCCCCCCCGGGEEECT-TCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHH
T ss_pred             HHHHhhccceecccCCcceEEecC-CCccccccCccccccCCCcccccceecChhhccHHHHccCCCCChhhhhhhcchH
Confidence            999999999999999999999998 89999999999976644         23789999988778889999999999999


Q ss_pred             HHHHHhCCCCChh---hhhhhhhhhccCCChhHHHHHHHHHhccC--CCCCCCC-cccccCCCHHHHHHHHHhhhcCcCC
Q 005958          314 MAKMVLRELMDPL---IFTKFKSFLTKGIDPSCLREFLLQVLNRN--SSSGNTG-FQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       314 LyemltG~~PF~~---~~~~~~~~~~~g~~~~~l~~~~~~~~~~~--~~~~~~~-~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      +|||++|.+||..   .+++..++...|.+...............  ....... ....+..++++++||.+||++||++
T Consensus       191 l~el~~g~~pf~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~dP~~  270 (299)
T d1ua2a_         191 LAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCA  270 (299)
T ss_dssp             HHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTT
T ss_pred             HHHHHhCcCCCCCCCHHHHHHHHHHhcCCCChhhccchhccchhhhhccCCCCChHHhcccCCHHHHHHHHHHccCChhh
Confidence            9999999999963   22223333323322211000000000000  0000000 1123467899999999999999999


Q ss_pred             CCCHHHHHcCCCCCCCCCCC
Q 005958          388 RISCLDALRHPFLCGPRWRV  407 (667)
Q Consensus       388 RpSa~elL~HPwf~~~~~~~  407 (667)
                      ||||+|+|+||||++.+.+.
T Consensus       271 R~sa~e~L~Hp~f~~~p~p~  290 (299)
T d1ua2a_         271 RITATQALKMKYFSNRPGPT  290 (299)
T ss_dssp             SCCHHHHHTSGGGTSSSCCC
T ss_pred             CcCHHHHhCCHhhCCCCCCC
Confidence            99999999999999876443

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.8e-52  Score=442.17  Aligned_cols=248  Identities=17%  Similarity=0.218  Sum_probs=211.1

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      .+++|++++.||+|+||    +||+|+++.     +|+.||||++.+..     ..+.+.+|+.+|+.+      +||||
T Consensus        39 ~ld~y~i~~~lG~G~fg----~Vy~a~~~~-----~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l------~hpnI  103 (350)
T d1rdqe_          39 QLDQFDRIKTLGTGSFG----RVMLVKHKE-----SGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAV------NFPFL  103 (350)
T ss_dssp             CGGGEEEEEEEEECSSC----EEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTC------CCTTB
T ss_pred             CccCeEEEEEeecCcCc----EEEEEEECC-----CCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHc------CCCcE
Confidence            46899999999999999    999999998     89999999997532     234578999999999      49999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      |++++++.     ....+++||| |+.+|+|.+++.+.+         .++|                    ..++.|+.
T Consensus       104 v~~~~~~~-----~~~~~~~v~e-~~~~g~l~~~l~~~~---------~l~e--------------------~~~~~i~~  148 (350)
T d1rdqe_         104 VKLEFSFK-----DNSNLYMVME-YVAGGEMFSHLRRIG---------RFSE--------------------PHARFYAA  148 (350)
T ss_dssp             CCEEEEEE-----CSSEEEEEEE-CCTTCBHHHHHHHHC---------CCCH--------------------HHHHHHHH
T ss_pred             eecccccc-----cccccccccc-cccccchhhhHhhcC---------CCCH--------------------HHHHHHHH
Confidence            99999999     8889999999 999999999998765         5665                    45788999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC------CCCCCCcccccCCCCCCchhhHHHHHH
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED------GPNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------~~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      ||+.||.|||++|||||||||+|||++. ++++||+|||+|+.....      .+.|||||++. +..|+.++|||||||
T Consensus       149 qi~~aL~yLH~~~iiHRDIKP~NILl~~-~g~ikL~DFG~a~~~~~~~~~~~Gt~~Y~APE~~~-~~~~~~~~DiwSlGv  226 (350)
T d1rdqe_         149 QIVLTFEYLHSLDLIYRDLKPENLLIDQ-QGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIIL-SKGYNKAVDWWALGV  226 (350)
T ss_dssp             HHHHHHHHHHHTTEECCCCSGGGEEECT-TSCEEECCCTTCEECSSCBCCCEECGGGCCHHHHT-TCCBCTHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCEecCcCCHHHcccCC-CCCEEeeeceeeeecccccccccCccccCCHHHHc-CCCCCccccccchhH
Confidence            9999999999999999999999999998 899999999999877643      37899999655 456899999999999


Q ss_pred             HHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC---
Q 005958          313 MMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI---  389 (667)
Q Consensus       313 iLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp---  389 (667)
                      ++|||++|++||.            +.....+...   +....       ...+..+++++.+||.+||++||.+|+   
T Consensus       227 ilyemltG~~Pf~------------~~~~~~~~~~---i~~~~-------~~~p~~~s~~~~~li~~~L~~dP~kR~~~~  284 (350)
T d1rdqe_         227 LIYEMAAGYPPFF------------ADQPIQIYEK---IVSGK-------VRFPSHFSSDLKDLLRNLLQVDLTKRFGNL  284 (350)
T ss_dssp             HHHHHHHSSCSSC------------CSSHHHHHHH---HHHCC-------CCCCTTCCHHHHHHHHHHSCSCTTTCTTSS
T ss_pred             HHHHHHhCCCCCC------------CcCHHHHHHH---HhcCC-------CCCCccCCHHHHHHHHHHhhhCHHhccccc
Confidence            9999999999995            3333332222   22221       223456899999999999999999995   


Q ss_pred             --CHHHHHcCCCCCCCCC
Q 005958          390 --SCLDALRHPFLCGPRW  405 (667)
Q Consensus       390 --Sa~elL~HPwf~~~~~  405 (667)
                        |++|+|+||||++.+|
T Consensus       285 r~t~~ell~Hp~f~~~~~  302 (350)
T d1rdqe_         285 KNGVNDIKNHKWFATTDW  302 (350)
T ss_dssp             TTTTHHHHTSGGGTTCCH
T ss_pred             cccHHHHHcCccccCCCH
Confidence              9999999999999875

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.9e-52  Score=437.17  Aligned_cols=246  Identities=20%  Similarity=0.193  Sum_probs=203.7

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      .|++++.||+|+||    +||+|++..     +++.||||++....     ..+.+.+|+++|++++      |||||++
T Consensus        16 ~y~~l~~lG~G~fg----~Vy~a~~~~-----~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~------HpnIv~~   80 (309)
T d1u5ra_          16 LFSDLREIGHGSFG----AVYFARDVR-----NSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLR------HPNTIQY   80 (309)
T ss_dssp             HEEEEEEEEECSSS----EEEEEEETT-----TTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCC------CTTBCCE
T ss_pred             hcEeeEEEecCCCe----EEEEEEECC-----CCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCC------CCCEeeE
Confidence            49999999999999    999999998     89999999997532     2245789999999994      9999999


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHH
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  241 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl  241 (667)
                      ++++.     +.+.+||||| ||.+|+|..++..++         .++|                    ..++.|+.||+
T Consensus        81 ~~~~~-----~~~~~~iv~E-~~~~g~l~~~~~~~~---------~l~e--------------------~~~~~i~~qi~  125 (309)
T d1u5ra_          81 RGCYL-----REHTAWLVME-YCLGSASDLLEVHKK---------PLQE--------------------VEIAAVTHGAL  125 (309)
T ss_dssp             EEEEE-----ETTEEEEEEE-CCSEEHHHHHHHHTS---------CCCH--------------------HHHHHHHHHHH
T ss_pred             EEEEE-----ECCEEEEEEE-ecCCCchHHHHHhCC---------CCCH--------------------HHHHHHHHHHH
Confidence            99999     7789999999 999989987776654         5665                    45678999999


Q ss_pred             HHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-----CCCCCCCcccccC--CCCCCchhhHHHHHHHH
Q 005958          242 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-----DGPNNSSPDSNMD--RRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       242 ~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-----~~~~Y~APE~l~~--~~~ys~ksDIWSLGviL  314 (667)
                      .||.|||++||+||||||+|||++. ++.+||+|||+|.....     +++.|||||++.+  ...|+.++|||||||++
T Consensus       126 ~aL~yLH~~~iiHrDiKp~NILl~~-~~~~Kl~DFG~a~~~~~~~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvil  204 (309)
T d1u5ra_         126 QGLAYLHSHNMIHRDVKAGNILLSE-PGLVKLGDFGSASIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITC  204 (309)
T ss_dssp             HHHHHHHHTTCBCCCCSGGGEEEET-TTEEEECCCTTCBSSSSBCCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHH
T ss_pred             HHHHHHHhCCEeccCCCcceEEECC-CCCEEEeecccccccCCCCccccCccccCHHHHhccCCCCcCchhhhhhHHHHH
Confidence            9999999999999999999999998 89999999999986653     3478999997754  35689999999999999


Q ss_pred             HHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHH
Q 005958          315 AKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDA  394 (667)
Q Consensus       315 yemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~el  394 (667)
                      |||++|++||.+.            ....   .+..+.....+     ......+++++++||.+||++||++|||++|+
T Consensus       205 yel~~g~~Pf~~~------------~~~~---~~~~i~~~~~~-----~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~el  264 (309)
T d1u5ra_         205 IELAERKPPLFNM------------NAMS---ALYHIAQNESP-----ALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVL  264 (309)
T ss_dssp             HHHHHSSCTTTTS------------CHHH---HHHHHHHSCCC-----CCSCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             HHHHHCCCCCCCC------------CHHH---HHHHHHhCCCC-----CCCCCCCCHHHHHHHHHHCcCChhHCcCHHHH
Confidence            9999999998522            2211   11222222111     11234578999999999999999999999999


Q ss_pred             HcCCCCCCC
Q 005958          395 LRHPFLCGP  403 (667)
Q Consensus       395 L~HPwf~~~  403 (667)
                      |+||||...
T Consensus       265 l~Hp~~~~~  273 (309)
T d1u5ra_         265 LKHRFVLRE  273 (309)
T ss_dssp             TTCHHHHSC
T ss_pred             HhCHHhcCC
Confidence            999999764

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-51  Score=433.08  Aligned_cols=248  Identities=20%  Similarity=0.269  Sum_probs=207.5

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      +++|++++.||+|+||    +||+|+++.     +++.||||++++..     ..+...+|+.++.+..     +|||||
T Consensus         1 iddy~i~~~iG~G~fg----~Vy~~~~~~-----t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~-----~hp~Iv   66 (320)
T d1xjda_           1 IEDFILHKMLGKGSFG----KVFLAEFKK-----TNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAW-----EHPFLT   66 (320)
T ss_dssp             CTTEEEEEEEEECSSS----EEEEEEETT-----TTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHT-----TCTTBC
T ss_pred             CCCeEEeeEEecCCCc----EEEEEEECC-----CCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhC-----CCCcEE
Confidence            4789999999999999    999999998     89999999997532     2245677887776432     599999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++.     +.+.+||||| ||++|+|.+++....         .++|                    ..++.++.|
T Consensus        67 ~~~~~~~-----~~~~~yivmE-y~~~g~L~~~i~~~~---------~~~e--------------------~~~~~~~~q  111 (320)
T d1xjda_          67 HMFCTFQ-----TKENLFFVME-YLNGGDLMYHIQSCH---------KFDL--------------------SRATFYAAE  111 (320)
T ss_dssp             CEEEEEE-----CSSEEEEEEE-CCTTCBHHHHHHHHS---------SCCH--------------------HHHHHHHHH
T ss_pred             EEEEEEc-----cCCceeEEEe-ecCCCcHHHHhhccC---------CCCH--------------------HHHHHHHHH
Confidence            9999999     8899999999 999999999998765         5565                    457889999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      |+.||+|||++||+||||||+|||++. ++++||+|||+|+.....         .+.|+|||++. +..|+.++|||||
T Consensus       112 i~~al~ylH~~~iiHrDikp~NiL~~~-~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwSl  189 (320)
T d1xjda_         112 IILGLQFLHSKGIVYRDLKLDNILLDK-DGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILL-GQKYNHSVDWWSF  189 (320)
T ss_dssp             HHHHHHHHHHTTCBCCCCCGGGEEECT-TSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHT-TCCBCTHHHHHHH
T ss_pred             HHHHHHHHHhCCeeeccCcccceeecC-CCceeccccchhhhcccccccccccCCCCCcCCHHHHc-CCCCCchhhhhhh
Confidence            999999999999999999999999998 899999999999865432         36799999655 5569999999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          311 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       311 GviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      ||++|||++|++||.            |.....+...+.   ...       ...+..+++++++||.+||++||++|||
T Consensus       190 GvilyemltG~~PF~------------~~~~~~~~~~i~---~~~-------~~~p~~~s~~~~dli~~~L~~dP~~R~s  247 (320)
T d1xjda_         190 GVLLYEMLIGQSPFH------------GQDEEELFHSIR---MDN-------PFYPRWLEKEAKDLLVKLFVREPEKRLG  247 (320)
T ss_dssp             HHHHHHHHHSSCSSC------------CSSHHHHHHHHH---HCC-------CCCCTTSCHHHHHHHHHHSCSSGGGSBT
T ss_pred             hHHHHHHHhCCCCCC------------CCCHHHHHHHHH---cCC-------CCCCccCCHHHHHHHHHhcccCCCCCcC
Confidence            999999999999994            444444333332   221       1233567999999999999999999999


Q ss_pred             HH-HHHcCCCCCCCCC
Q 005958          391 CL-DALRHPFLCGPRW  405 (667)
Q Consensus       391 a~-elL~HPwf~~~~~  405 (667)
                      +. |+++||||++.+|
T Consensus       248 ~~~~l~~hpff~~~~~  263 (320)
T d1xjda_         248 VRGDIRQHPLFREINW  263 (320)
T ss_dssp             TBSCGGGSGGGTTCCH
T ss_pred             HHHHHHhCchhccCCH
Confidence            95 8999999999775

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-51  Score=425.06  Aligned_cols=272  Identities=24%  Similarity=0.303  Sum_probs=209.6

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      +++|+++++||+|+||    +||+|++..     +++.||||+++...    ..+.+.+|+++|+++      +|||||+
T Consensus         1 ~d~Y~~~~~lG~G~fg----~Vy~~~~~~-----~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l------~Hp~Iv~   65 (298)
T d1gz8a_           1 MENFQKVEKIGEGTYG----VVYKARNKL-----TGEVVALKKIRLDTETEGVPSTAIREISLLKEL------NHPNIVK   65 (298)
T ss_dssp             CTTEEEEEEEEECSSS----EEEEEEETT-----TCCEEEEEEEC-------CCHHHHHHHHHHTTC------CCTTBCC
T ss_pred             CCCCEeccEEecCcCe----EEEEEEECC-----CCCEEEEEEEehhhcChHHHHHHHHHHHHHHhC------CCCcEEE
Confidence            5899999999999999    999999998     89999999997532    235678999999999      4999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     +.+.+|+||| |+++ ++.+++....       ...++|                    ..++.++.||
T Consensus        66 ~~~~~~-----~~~~~~iv~e-~~~~-~~~~~~~~~~-------~~~l~e--------------------~~~~~~~~qi  111 (298)
T d1gz8a_          66 LLDVIH-----TENKLYLVFE-FLHQ-DLKKFMDASA-------LTGIPL--------------------PLIKSYLFQL  111 (298)
T ss_dssp             EEEEEE-----ETTEEEEEEE-CCSE-EHHHHHHHTT-------TTCCCH--------------------HHHHHHHHHH
T ss_pred             eccccc-----cccceeEEEe-ecCC-chhhhhhhhc-------ccCCCH--------------------HHHHHHHHHH
Confidence            999999     7789999999 9987 6666665432       124555                    4578899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC---------CCCCCCCcccccCCCCCCchhhHHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE---------DGPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~---------~~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      +.||+|||++|||||||||+|||++. ++.+||+|||+|+....         +.+.|+|||++.....++.++||||+|
T Consensus       112 l~~L~yLH~~~IiHrDiKpeNIl~~~-~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlG  190 (298)
T d1gz8a_         112 LQGLAFCHSHRVLHRDLKPQNLLINT-EGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLG  190 (298)
T ss_dssp             HHHHHHHHHTTCCCSCCCGGGEEECT-TSCEEECSTTHHHHHCCCSBCTTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHH
T ss_pred             HHHHHHhhcCCEEccccCchheeecc-cCcceeccCCcceeccCCcccceeecccceeeehhhhccccCCCccccccccc
Confidence            99999999999999999999999998 89999999999976543         237899999877777789999999999


Q ss_pred             HHHHHHHhCCCCChhh---hhhhhhhhccCCChhHHHHHHHHHhc---cCCCCCC-CCcccccCCCHHHHHHHHHhhhcC
Q 005958          312 FMMAKMVLRELMDPLI---FTKFKSFLTKGIDPSCLREFLLQVLN---RNSSSGN-TGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       312 viLyemltG~~PF~~~---~~~~~~~~~~g~~~~~l~~~~~~~~~---~~~~~~~-~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      |++|+|++|++||.+.   .....++...+.+.+...........   ..+.... ......+.+++++++||.+||++|
T Consensus       191 vily~m~~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~d  270 (298)
T d1gz8a_         191 CIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYD  270 (298)
T ss_dssp             HHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSS
T ss_pred             hhhhHHhhCCCCCCCCCHHHHHHHHHHhcCCCchhhccccccccccccccccccccchhhhccCCCHHHHHHHHHHccCC
Confidence            9999999999999632   22233332233322211111000000   0000000 001234567899999999999999


Q ss_pred             cCCCCCHHHHHcCCCCCCCCCC
Q 005958          385 PSKRISCLDALRHPFLCGPRWR  406 (667)
Q Consensus       385 P~kRpSa~elL~HPwf~~~~~~  406 (667)
                      |++|||++|+|+||||++...+
T Consensus       271 P~~R~t~~ell~H~ff~~~~~p  292 (298)
T d1gz8a_         271 PNKRISAKAALAHPFFQDVTKP  292 (298)
T ss_dssp             TTTSCCHHHHHTSGGGTTCCCC
T ss_pred             hhHCcCHHHHhCCHhhccCCCC
Confidence            9999999999999999998754

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-51  Score=434.96  Aligned_cols=251  Identities=16%  Similarity=0.248  Sum_probs=208.0

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh-HHHHHHHHHHHHHHhhccCCCCCcceEEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-QRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~-~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~  163 (667)
                      .++|++++.||+|+||    +||+|+++.     +++.||||+++.... ...+.+|+++|+.++      |||||++++
T Consensus         4 ~~rY~i~~~lG~G~fg----~Vy~~~~~~-----~~~~~AiK~i~~~~~~~~~~~~Ei~il~~l~------HpnIv~~~~   68 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFG----IVHRCVETS-----SKKTYMAKFVKVKGTDQVLVKKEISILNIAR------HRNILHLHE   68 (321)
T ss_dssp             TTTEEEEEEEEECSSE----EEEEEEETT-----TTEEEEEEEECCCTHHHHHHHHHHHHHHHSC------CTTBCCEEE
T ss_pred             ccceEEEEEEecCCCe----EEEEEEECC-----CCcEEEEEEEcCCcccHHHHHHHHHHHHhCC------CCCCCeEEE
Confidence            4889999999999999    999999998     899999999987443 345689999999995      999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      +|.     +.+.+||||| ||+||+|.++|..++        ..++|+                    .++.|+.||+.|
T Consensus        69 ~~~-----~~~~~~lvmE-~~~gg~L~~~i~~~~--------~~l~e~--------------------~~~~i~~qi~~a  114 (321)
T d1tkia_          69 SFE-----SMEELVMIFE-FISGLDIFERINTSA--------FELNER--------------------EIVSYVHQVCEA  114 (321)
T ss_dssp             EEE-----ETTEEEEEEC-CCCCCBHHHHHTSSS--------CCCCHH--------------------HHHHHHHHHHHH
T ss_pred             EEE-----ECCEEEEEEe-cCCCCcHHHHHHhcC--------CCCCHH--------------------HHHHHHHHHHHH
Confidence            999     7789999999 999999999998653        246664                    578899999999


Q ss_pred             HHHHHHCCCcccCCCCCcEEEcCC-CCeEEEeeecccccccCCC--------CCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          244 VNYLHSHGLAHTELRLENVHISPV-DRHIKVGILGNAADFYEDG--------PNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       244 L~yLHs~gIvHrDLKPeNILl~~~-~~~vKL~DFGlA~~~~~~~--------~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      |+|||++||+||||||+|||++.+ ...+||+|||+++......        +.|+|||.+ ....|+.++|||||||++
T Consensus       115 l~yLH~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~~~~~~~~t~~y~ape~~-~~~~~~~~~DiWSlGvil  193 (321)
T d1tkia_         115 LQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVH-QHDVVSTATDMWSLGTLV  193 (321)
T ss_dssp             HHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEEEEEESCGGGSCHHHH-TTCEECHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcccccccceeecCCCceEEEEcccchhhccccCCcccccccccccccchhc-cCCCCCchhhcccHHHHH
Confidence            999999999999999999999862 4589999999998765543        789999954 555699999999999999


Q ss_pred             HHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHH
Q 005958          315 AKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDA  394 (667)
Q Consensus       315 yemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~el  394 (667)
                      |+|++|.+||.            +.....+..   .+......   .....++.+++++++||.+||++||++|||++|+
T Consensus       194 y~ll~G~~Pf~------------~~~~~~~~~---~i~~~~~~---~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~ei  255 (321)
T d1tkia_         194 YVLLSGINPFL------------AETNQQIIE---NIMNAEYT---FDEEAFKEISIEAMDFVDRLLVKERKSRMTASEA  255 (321)
T ss_dssp             HHHHHSSCTTC------------CSSHHHHHH---HHHHTCCC---CCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHH
T ss_pred             HHHHhCCCCCC------------CCCHHHHHH---HHHhCCCC---CChhhccCCCHHHHHHHHHHccCChhHCcCHHHH
Confidence            99999999995            222222222   22222111   1122345689999999999999999999999999


Q ss_pred             HcCCCCCCC
Q 005958          395 LRHPFLCGP  403 (667)
Q Consensus       395 L~HPwf~~~  403 (667)
                      |+||||++.
T Consensus       256 l~hp~~~~~  264 (321)
T d1tkia_         256 LQHPWLKQK  264 (321)
T ss_dssp             HHSHHHHSC
T ss_pred             hcCHhhccC
Confidence            999999763

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-51  Score=422.65  Aligned_cols=243  Identities=19%  Similarity=0.206  Sum_probs=203.9

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhh--------HHHHHHHHHHHHHHhhccCCCCCc
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA--------QRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~--------~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      ++|++.+.||+|+||    +||+|++..     +++.||||++.+...        ..++.+|+.+|+++++    .|||
T Consensus         4 ~~Y~i~~~lG~G~fg----~Vy~a~~~~-----~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~----~h~n   70 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFG----SVYSGIRVS-----DNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS----GFSG   70 (273)
T ss_dssp             TTEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCS----SSCS
T ss_pred             CeEEEeEEEeeCCCe----EEEEEEECC-----CCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhcc----CCCC
Confidence            689999999999999    999999998     899999999975321        1234689999999952    3999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCC-CCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGS-FSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~-GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      ||++++++.     +.+.+|+||| |+.+ +++.+++....         .++|+                    .++.|
T Consensus        71 Iv~~~~~~~-----~~~~~~lv~e-~~~~~~~l~~~~~~~~---------~l~e~--------------------~~~~~  115 (273)
T d1xwsa_          71 VIRLLDWFE-----RPDSFVLILE-RPEPVQDLFDFITERG---------ALQEE--------------------LARSF  115 (273)
T ss_dssp             BCCEEEEEE-----CSSEEEEEEE-CCSSEEEHHHHHHHHC---------SCCHH--------------------HHHHH
T ss_pred             ccEEEEEEe-----eCCeEEEEEE-eccCcchHHHHHhccC---------CCCHH--------------------HHHHH
Confidence            999999999     7889999999 7754 68999988754         56664                    57789


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-------CCCCCCcccccCCCCCCchhhHHH
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-------GPNNSSPDSNMDRRQMMIAFDMRC  309 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-------~~~Y~APE~l~~~~~ys~ksDIWS  309 (667)
                      +.||+.||+|||++||+||||||+|||++.+++.+||+|||+|+.....       ++.|+|||++.+...++.++||||
T Consensus       116 ~~qi~~al~~lH~~~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwS  195 (273)
T d1xwsa_         116 FWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWS  195 (273)
T ss_dssp             HHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCccccCcccceEEecCCCeEEECccccceecccccccccccCCCcCCHHHHcCCCCCCccccccc
Confidence            9999999999999999999999999999974689999999999765432       378999997776666788899999


Q ss_pred             HHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          310 VGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       310 LGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      |||++|||++|++||......                     ...       .......+|+++++||.+||++||++||
T Consensus       196 lGvilyell~g~~Pf~~~~~i---------------------~~~-------~~~~~~~~s~~~~~li~~~L~~dp~~R~  247 (273)
T d1xwsa_         196 LGILLYDMVCGDIPFEHDEEI---------------------IRG-------QVFFRQRVSSECQHLIRWCLALRPSDRP  247 (273)
T ss_dssp             HHHHHHHHHHSSCSCCSHHHH---------------------HHC-------CCCCSSCCCHHHHHHHHHHTCSSGGGSC
T ss_pred             ceeeehhHhhCCCCCCCchHH---------------------hhc-------ccCCCCCCCHHHHHHHHHHccCCHhHCc
Confidence            999999999999999633211                     111       1123356889999999999999999999


Q ss_pred             CHHHHHcCCCCCCCC
Q 005958          390 SCLDALRHPFLCGPR  404 (667)
Q Consensus       390 Sa~elL~HPwf~~~~  404 (667)
                      |++|+|+||||++..
T Consensus       248 s~~eil~hp~~~~~~  262 (273)
T d1xwsa_         248 TFEEIQNHPWMQDVL  262 (273)
T ss_dssp             CHHHHHTSGGGSSCC
T ss_pred             CHHHHhcCHhhCCCC
Confidence            999999999998864

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=2.9e-50  Score=426.00  Aligned_cols=268  Identities=21%  Similarity=0.266  Sum_probs=210.3

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGY  164 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~  164 (667)
                      .++|+++++||+|+||    +||+|+++.     +++.||||+++... .+++.+|+++|++++     +||||++++++
T Consensus        34 ~d~y~i~~~LG~G~fg----~V~~a~~~~-----~~~~vAiK~i~~~~-~~~~~~Ei~il~~l~-----~hpnIv~~~~~   98 (328)
T d3bqca1          34 QDDYQLVRKLGRGKYS----EVFEAINIT-----NNEKVVVKILKPVK-KKKIKREIKILENLR-----GGPNIITLADI   98 (328)
T ss_dssp             GGGEEEEEEEEECSSE----EEEEEEETT-----TTEEEEEEEECSSC-HHHHHHHHHHHHHHT-----TSTTBCCEEEE
T ss_pred             CcCeEEEEEEecCcCe----EEEEEEECC-----CCCEEEEEEECHHH-HHHHHHHHHHHHhcc-----CCCCCcEEEEE
Confidence            4789999999999999    999999988     89999999997653 456789999999996     69999999999


Q ss_pred             EEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHH
Q 005958          165 VSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGV  244 (667)
Q Consensus       165 ~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL  244 (667)
                      |...   ....+++||| ||++|+|.++.+            .++|                    ..++.+++||+.||
T Consensus        99 ~~~~---~~~~~~~v~e-~~~~~~L~~~~~------------~l~e--------------------~~i~~i~~qil~aL  142 (328)
T d3bqca1          99 VKDP---VSRTPALVFE-HVNNTDFKQLYQ------------TLTD--------------------YDIRFYMYEILKAL  142 (328)
T ss_dssp             EECT---TTCSEEEEEE-CCCSCBGGGTTT------------SCCH--------------------HHHHHHHHHHHHHH
T ss_pred             EEec---CCCceeEEEe-ecCCCcHHHHhc------------CCCH--------------------HHHHHHHHHHHHHH
Confidence            9844   5678999999 999999876532            4565                    45788999999999


Q ss_pred             HHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC--------CCCCCcccccCCCCCCchhhHHHHHHHHHH
Q 005958          245 NYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG--------PNNSSPDSNMDRRQMMIAFDMRCVGFMMAK  316 (667)
Q Consensus       245 ~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~--------~~Y~APE~l~~~~~ys~ksDIWSLGviLye  316 (667)
                      +|||++||+||||||+|||++.+++.+||+|||+|.......        +.|+|||.+.+...|+.++||||+||++||
T Consensus       143 ~~LH~~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e  222 (328)
T d3bqca1         143 DYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLAS  222 (328)
T ss_dssp             HHHHHTTEECCCCSGGGEEEETTTTEEEECCGGGCEECCTTCCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHH
T ss_pred             HHHhhcccccccccccceEEcCCCCeeeecccccceeccCCCcccccccCccccCcccccCCCCCCcccchhhhhhhhHH
Confidence            999999999999999999999746689999999998765432        679999988888889999999999999999


Q ss_pred             HHhCCCCChh----hhhhhhhhhccCCChhHHHHHHHHHhc-----------cCCCCCC---CCcccccCCCHHHHHHHH
Q 005958          317 MVLRELMDPL----IFTKFKSFLTKGIDPSCLREFLLQVLN-----------RNSSSGN---TGFQILDRNWGAGWNLLS  378 (667)
Q Consensus       317 mltG~~PF~~----~~~~~~~~~~~g~~~~~l~~~~~~~~~-----------~~~~~~~---~~~~~~~~~s~e~~dLI~  378 (667)
                      |++|+.||..    ..+...+....|.+.  ........-.           .......   ........++++++|||.
T Consensus       223 ~~~g~~pf~~~~~~~~~~~~i~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~  300 (328)
T d3bqca1         223 MIFRKEPFFHGHDNYDQLVRIAKVLGTED--LYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLD  300 (328)
T ss_dssp             HHHTCSSSSCCSSHHHHHHHHHHHHCHHH--HHHHHHHTTCCCCGGGGGTCCCCCCCCGGGGCCTTTGGGCCHHHHHHHH
T ss_pred             hccCCCCCCCCchhHHHHHHHHHHHCCch--hhhhhhhcccccCcccchhcccccccchhhcccccccccCCHHHHHHHH
Confidence            9999999862    222222222233211  1111111000           0000000   001123457899999999


Q ss_pred             HhhhcCcCCCCCHHHHHcCCCCCCCCC
Q 005958          379 LLLATKPSKRISCLDALRHPFLCGPRW  405 (667)
Q Consensus       379 ~~L~~DP~kRpSa~elL~HPwf~~~~~  405 (667)
                      +||++||++||||+|+|+||||+++.|
T Consensus       301 ~mL~~dP~~R~ta~e~L~Hp~F~~v~~  327 (328)
T d3bqca1         301 KLLRYDHQSRLTAREAMEHPYFYTVVK  327 (328)
T ss_dssp             HHSCSSGGGSCCHHHHHTSGGGTTSCC
T ss_pred             HHccCChhHCcCHHHHhcCcccCCCCC
Confidence            999999999999999999999999876

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=2.8e-50  Score=418.03  Aligned_cols=266  Identities=21%  Similarity=0.245  Sum_probs=208.1

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      +++|+++++||+|+||    +||+|+++      +++.||||+++...    ..+.+.+|+.+|++++      |||||+
T Consensus         1 ~~~Y~~~~~iG~G~fg----~Vy~~~~~------~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~------hpnIv~   64 (286)
T d1ob3a_           1 MEKYHGLEKIGEGTYG----VVYKAQNN------YGETFALKKIRLEKEDEGIPSTTIREISILKELK------HSNIVK   64 (286)
T ss_dssp             CCSEEEEEEEEEETTE----EEEEEEET------TSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCC------CTTBCC
T ss_pred             CCCceeccEEecCCCc----EEEEEEeC------CCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCC------CCcEEe
Confidence            5799999999999999    99999986      58999999997532    2356789999999994      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     ..+..+++|| ++.++.+..+....+         .++|                    ..++.|+.||
T Consensus        65 ~~~~~~-----~~~~~~i~~e-~~~~~~~~~~~~~~~---------~l~~--------------------~~~~~i~~qi  109 (286)
T d1ob3a_          65 LYDVIH-----TKKRLVLVFE-HLDQDLKKLLDVCEG---------GLES--------------------VTAKSFLLQL  109 (286)
T ss_dssp             EEEEEE-----CSSCEEEEEE-CCSEEHHHHHHTSTT---------CCCH--------------------HHHHHHHHHH
T ss_pred             eeeecc-----cCCceeEEEE-eehhhhHHHHHhhcC---------Ccch--------------------hhhHHHHHHH
Confidence            999999     8889999999 999866666655443         5565                    4578899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC---------CCCCCCcccccCCCCCCchhhHHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~---------~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      +.||+|||++|||||||||+|||++. ++.+||+|||.|......         .+.|+|||.+.+...++.++||||+|
T Consensus       110 ~~~L~~LH~~~IvHrDiKp~NIll~~-~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~~DiwslG  188 (286)
T d1ob3a_         110 LNGIAYCHDRRVLHRDLKPQNLLINR-EGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVG  188 (286)
T ss_dssp             HHHHHHHHHTTCCCSCCCGGGEEECT-TSCEEECCTTHHHHHCC---------CCCTTCCHHHHTTCCSCCTHHHHHHHH
T ss_pred             HHHHHHhccCcEEecCCCCceeeEcC-CCCEEecccccceecccCccccceecccchhhhHHHHhCCCCCCcceeehhcC
Confidence            99999999999999999999999998 899999999999765432         37899999888888899999999999


Q ss_pred             HHHHHHHhCCCCChh---hhhhhhhhhccCCChhHHHHHHHHHhc----cCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          312 FMMAKMVLRELMDPL---IFTKFKSFLTKGIDPSCLREFLLQVLN----RNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       312 viLyemltG~~PF~~---~~~~~~~~~~~g~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      |++|||++|++||.+   .++..+++...|.+.............    .............+..+++++|||.+||++|
T Consensus       189 v~l~el~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~d  268 (286)
T d1ob3a_         189 CIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLD  268 (286)
T ss_dssp             HHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSS
T ss_pred             cHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCChhhccchhhhhhcccccccccCcchhhhcccCCHHHHHHHHHHccCC
Confidence            999999999999963   222333333333322111100000000    0000011112345678899999999999999


Q ss_pred             cCCCCCHHHHHcCCCCCC
Q 005958          385 PSKRISCLDALRHPFLCG  402 (667)
Q Consensus       385 P~kRpSa~elL~HPwf~~  402 (667)
                      |++|||++|+|+||||++
T Consensus       269 P~~R~s~~ell~Hp~f~~  286 (286)
T d1ob3a_         269 PNQRITAKQALEHAYFKE  286 (286)
T ss_dssp             TTTSCCHHHHHTSGGGGC
T ss_pred             hhHCcCHHHHhcCcccCc
Confidence            999999999999999975

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-50  Score=431.47  Aligned_cols=260  Identities=18%  Similarity=0.206  Sum_probs=202.7

Q ss_pred             ccCCeEEEe-EeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           84 NMGDFKILD-RVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        84 ~~~~y~i~~-~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      .+++|++++ .||+|+||    +||+|++..     +++.||||+++..   ....+|++++.++.     +|||||+++
T Consensus         9 i~~~y~i~~~~lG~G~fg----~Vy~a~~~~-----~~~~vAiK~i~~~---~~~~~E~~~~~~~~-----~hpnIv~l~   71 (335)
T d2ozaa1           9 IIDDYKVTSQVLGLGING----KVLQIFNKR-----TQEKFALKMLQDC---PKARREVELHWRAS-----QCPHIVRIV   71 (335)
T ss_dssp             GGGTEEEEEEEEEECSSC----EEEEEEETT-----TCCEEEEEEEECS---HHHHHHHHHHHHHT-----TSTTBCCEE
T ss_pred             cccCEEEeeEEeeeccCe----EEEEEEECC-----CCCEEEEEEECCc---HHHHHHHHHHHHhc-----CCCCCCeEE
Confidence            468999875 59999999    999999998     8999999999653   45678999987775     699999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      ++|++.. ..+..+||||| ||+||+|.++|.+++.       ..|+|                    ..++.|+.||+.
T Consensus        72 ~~~~~~~-~~~~~~~ivmE-y~~gg~L~~~i~~~~~-------~~l~e--------------------~~~~~i~~qi~~  122 (335)
T d2ozaa1          72 DVYENLY-AGRKCLLIVME-CLDGGELFSRIQDRGD-------QAFTE--------------------REASEIMKSIGE  122 (335)
T ss_dssp             EEEEEEE-TTEEEEEEEEE-CCCSEEHHHHHHSCSC-------CCEEH--------------------HHHHHHHHHHHH
T ss_pred             EEEeecc-cCCCEEEEEEE-CCCCCcHHHHHHhcCC-------CCcCH--------------------HHHHHHHHHHHH
Confidence            9997321 14578999999 9999999999986431       14554                    567889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcC--CCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISP--VDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~--~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      ||+|||++||+||||||+|||++.  .++.+||+|||+|+.....        .+.|+|||++ .+..|+.++|||||||
T Consensus       123 al~ylH~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~-~~~~y~~~~DiwSlGv  201 (335)
T d2ozaa1         123 AIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVL-GPEKYDKSCDMWSLGV  201 (335)
T ss_dssp             HHHHHHHTTEECCCCSGGGEEESCSSTTCCEEECCCTTCEECCCCCCCCCCSCCCSSCCCCCC-CGGGGSHHHHHHHHHH
T ss_pred             HHHHHHHcCCccccccccccccccccccccccccccceeeeccCCCccccccCCcccCCcHHH-cCCCCCHHHHHHhhch
Confidence            999999999999999999999986  2467999999999865443        3889999954 5566999999999999


Q ss_pred             HHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHH
Q 005958          313 MMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCL  392 (667)
Q Consensus       313 iLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~  392 (667)
                      ++|+|++|++||.+....           .........+......   ...+....+|+++++||.+||++||++|||+.
T Consensus       202 ily~lltg~~Pf~~~~~~-----------~~~~~~~~~i~~~~~~---~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~  267 (335)
T d2ozaa1         202 IMYILLCGYPPFYSNHGL-----------AISPGMKTRIRMGQYE---FPNPEWSEVSEEVKMLIRNLLKTEPTQRMTIT  267 (335)
T ss_dssp             HHHHHTTSSCSCEETTCC-------------------CCCSCSSS---CCTTHHHHSCHHHHHHHHHHSCSSTTTSCCHH
T ss_pred             hHHHHhhCCCCCCCCCHH-----------HHHHHHHHHHhcCCCC---CCCcccccCCHHHHHHHHHHccCChhHCcCHH
Confidence            999999999999632110           0011111111100000   01112346789999999999999999999999


Q ss_pred             HHHcCCCCCCCC
Q 005958          393 DALRHPFLCGPR  404 (667)
Q Consensus       393 elL~HPwf~~~~  404 (667)
                      |+|+||||.+..
T Consensus       268 eil~hp~~~~~~  279 (335)
T d2ozaa1         268 EFMNHPWIMQST  279 (335)
T ss_dssp             HHHHSHHHHTTT
T ss_pred             HHHcCHHhhCCC
Confidence            999999997644

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-50  Score=418.25  Aligned_cols=278  Identities=20%  Similarity=0.197  Sum_probs=205.9

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      .++|+++++||+|+||    +||+|++..+    +++.||||+++...    ......+|+.+|+.|+.   .+||||++
T Consensus         6 ~~~Y~i~~~LG~G~fg----~V~~a~~~~~----~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~---~~HpnIv~   74 (305)
T d1blxa_           6 DQQYECVAEIGEGAYG----KVFKARDLKN----GGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLET---FEHPNVVR   74 (305)
T ss_dssp             GGTEEEEEEEEEETTE----EEEEEEETTT----TTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHH---TCCTTBCC
T ss_pred             cCCEEEEEEEecccCe----EEEEEEEECC----CCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhh---cCCCCcce
Confidence            3789999999999999    9999999762    36789999997532    22346789999988852   25999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      ++++|..........++++|| |+++|++........        ..+++                    ..++.++.||
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~e-~~~~~~~~~~~~~~~--------~~~~~--------------------~~~~~~~~qi  125 (305)
T d1blxa_          75 LFDVCTVSRTDRETKLTLVFE-HVDQDLTTYLDKVPE--------PGVPT--------------------ETIKDMMFQL  125 (305)
T ss_dssp             EEEEEEEEECSSEEEEEEEEE-CCSCBHHHHHHHSCT--------TCSCH--------------------HHHHHHHHHH
T ss_pred             eeeeecccccccCceEEEEEE-eccCCchhhhhhccC--------CCCCH--------------------HHHHHHHHHH
Confidence            999997554446678999999 999966654444322        23444                    4578899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC--------CCCCCCCcccccCCCCCCchhhHHHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE--------DGPNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~--------~~~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      +.||+|||++||+||||||+|||++. ++.+||+|||+++....        +++.|+|||++. +..|+.++||||+||
T Consensus       126 ~~aL~yLH~~~ivHrDiKp~NILi~~-~~~~kl~dfg~~~~~~~~~~~~~~~gT~~Y~APE~~~-~~~y~~~~DiwSlG~  203 (305)
T d1blxa_         126 LRGLDFLHSHRVVHRDLKPQNILVTS-SGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLL-QSSYATPVDLWSVGC  203 (305)
T ss_dssp             HHHHHHHHHTTCCCCCCCGGGEEECT-TCCEEECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHT-TCCCCTHHHHHHHHH
T ss_pred             HHHHHHHHhCCEEecCCCccEEEEcC-CCCeeecchhhhhhhcccccCCCcccChhhcCcchhc-CCCCChhehhhchHH
Confidence            99999999999999999999999998 89999999999875432        348999999654 566999999999999


Q ss_pred             HHHHHHhCCCCChhh---hhhhhhhhccCCChhHHHHHHHH--HhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          313 MMAKMVLRELMDPLI---FTKFKSFLTKGIDPSCLREFLLQ--VLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       313 iLyemltG~~PF~~~---~~~~~~~~~~g~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      ++|||++|++||...   +.+..+....|.+..........  ..................+++++++||.+||++||++
T Consensus       204 il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~  283 (305)
T d1blxa_         204 IFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAK  283 (305)
T ss_dssp             HHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTT
T ss_pred             HHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCchhcccccccchhhhhccccccchhhccccCCHHHHHHHHHHCcCChhH
Confidence            999999999999632   12222222222221110000000  0000000011112245578899999999999999999


Q ss_pred             CCCHHHHHcCCCCCCCC
Q 005958          388 RISCLDALRHPFLCGPR  404 (667)
Q Consensus       388 RpSa~elL~HPwf~~~~  404 (667)
                      ||||+|+|+||||++++
T Consensus       284 R~sa~e~L~Hpff~~i~  300 (305)
T d1blxa_         284 RISAYSALSHPYFQDLE  300 (305)
T ss_dssp             SCCHHHHHTSGGGTTCC
T ss_pred             CcCHHHHhcChhhcCch
Confidence            99999999999999876

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-49  Score=409.30  Aligned_cols=258  Identities=22%  Similarity=0.314  Sum_probs=209.2

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      +++|+++++||+|+||    +||+|++..     +++.||||+++..    .....+.+|+.+|+.++      ||||++
T Consensus         1 ~~ry~~i~~LG~G~fg----~V~~~~~~~-----~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~------h~niv~   65 (292)
T d1unla_           1 MQKYEKLEKIGEGTYG----TVFKAKNRE-----THEIVALKRVRLDDDDEGVPSSALREICLLKELK------HKNIVR   65 (292)
T ss_dssp             CCSEEEEEEEEECSSS----EEEEEEETT-----TCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCC------CTTBCC
T ss_pred             CCCCEeeeEEecCcCe----EEEEEEECC-----CCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcC------cCCEEe
Confidence            5789999999999999    999999998     8999999999753    23456789999999994      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     +....++||| ++.+++|..++...+         .+++                    ..++.++.|+
T Consensus        66 ~~~~~~-----~~~~~~iv~~-~~~~~~l~~~~~~~~---------~~~~--------------------~~~~~~~~q~  110 (292)
T d1unla_          66 LHDVLH-----SDKKLTLVFE-FCDQDLKKYFDSCNG---------DLDP--------------------EIVKSFLFQL  110 (292)
T ss_dssp             EEEEEE-----CSSEEEEEEE-CCSEEHHHHHHHTTT---------CCCH--------------------HHHHHHHHHH
T ss_pred             eccccc-----cccceeEEee-ecccccccccccccc---------ccch--------------------hHHHHHHHHH
Confidence            999999     8889999999 999989988887654         4444                    4578899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC---------CCCCCcccccCCCCCCchhhHHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG---------PNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~---------~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      +.||+|||++||+||||||+|||++. ++.+||+|||.|+......         +.|+|||++.....++.++||||+|
T Consensus       111 ~~aL~~lH~~~IvHrDiKP~NIli~~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG  189 (292)
T d1unla_         111 LKGLGFCHSRNVLHRDLKPQNLLINR-NGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAG  189 (292)
T ss_dssp             HHHHHHHHHTTEECCCCSGGGEEECT-TCCEEECCCTTCEECCSCCSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHH
T ss_pred             HHHHHHhhcCCEeeecccCccccccc-CCceeeeecchhhcccCCCccceeeccccchhhhhHhccCCCCCchhhccccc
Confidence            99999999999999999999999998 8899999999998765432         6788999777777789999999999


Q ss_pred             HHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCC-------------------CCCCCCcccccCCCHH
Q 005958          312 FMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNS-------------------SSGNTGFQILDRNWGA  372 (667)
Q Consensus       312 viLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~-------------------~~~~~~~~~~~~~s~e  372 (667)
                      |++|||++|+.||.           .+.+.......+........                   .............+++
T Consensus       190 ~il~ell~g~~p~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  258 (292)
T d1unla_         190 CIFAELANAGRPLF-----------PGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNAT  258 (292)
T ss_dssp             HHHHHHTTTSCCSC-----------CCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHH
T ss_pred             hHHHHHhhCCCCCC-----------CCCCHHHHHHHHHhhcCCCChhhhhhhhhcccccccccccccchhhhccccCCHH
Confidence            99999999998863           12222222121111111110                   0111222345577899


Q ss_pred             HHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          373 GWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       373 ~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      +++||.+||++||++||||+|+|+||||++..
T Consensus       259 ~~dll~~mL~~dP~~R~sa~e~L~Hp~f~~~~  290 (292)
T d1unla_         259 GRDLLQNLLKCNPVQRISAEEALQHPYFSDFC  290 (292)
T ss_dssp             HHHHHHHHSCSSGGGSCCHHHHTTSGGGSSCS
T ss_pred             HHHHHHHHccCChhHCcCHHHHhcChhhcCCC
Confidence            99999999999999999999999999998754

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-49  Score=425.45  Aligned_cols=275  Identities=18%  Similarity=0.247  Sum_probs=210.9

Q ss_pred             CeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEE
Q 005958           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVS  166 (667)
Q Consensus        87 ~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~  166 (667)
                      +|+.+++||+|+||    +||+|+++.     +++.||||++....  ....+|+++|++++      ||||++++++|.
T Consensus        21 ~Y~~~k~LG~G~fg----~Vy~a~~~~-----~~~~vAiK~i~~~~--~~~~~Ei~il~~l~------h~niv~~~~~~~   83 (350)
T d1q5ka_          21 SYTDTKVIGNGSFG----VVYQAKLCD-----SGELVAIKKVLQDK--RFKNRELQIMRKLD------HCNIVRLRYFFY   83 (350)
T ss_dssp             EEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEECCS--SSCCHHHHHHHHCC------CTTBCCEEEEEE
T ss_pred             CcEeeeEEeeCcCe----EEEEEEECC-----CCCEEEEEEECccc--hHHHHHHHHHHhcC------CCCCCcEEEEEE
Confidence            69999999999999    999999998     89999999997643  23357999999994      999999999996


Q ss_pred             eccc-CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHH
Q 005958          167 SHTT-SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVN  245 (667)
Q Consensus       167 ~~~~-~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~  245 (667)
                      .... .+..++||||| ||++ ++.+.+....     .....++|                    ..++.|++||+.||+
T Consensus        84 ~~~~~~~~~~~~lv~E-y~~~-~~~~~l~~~~-----~~~~~l~~--------------------~~~~~i~~qil~aL~  136 (350)
T d1q5ka_          84 SSGEKKDEVYLNLVLD-YVPE-TVYRVARHYS-----RAKQTLPV--------------------IYVKLYMYQLFRSLA  136 (350)
T ss_dssp             EC--CCSCCEEEEEEE-CCSE-EHHHHHHHHH-----HTTCCCCH--------------------HHHHHHHHHHHHHHH
T ss_pred             ecCccCCceEEEEEEe-ccCC-ccHHHHHhhh-----hccCCCCH--------------------HHHHHHHHHHHHHHH
Confidence            4422 24567899999 9998 5554443210     00124554                    567889999999999


Q ss_pred             HHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHHHHHHHHH
Q 005958          246 YLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKM  317 (667)
Q Consensus       246 yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSLGviLyem  317 (667)
                      |||++||+||||||+|||++.++..+||+|||+|..+...        .+.|+|||++.+...|+.++||||+||++|||
T Consensus       137 yLH~~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el  216 (350)
T d1q5ka_         137 YIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAEL  216 (350)
T ss_dssp             HHHTTTEECCCCCGGGEEECTTTCCEEECCCTTCEECCTTSCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHH
T ss_pred             HHHhcCCcccCCCcceEEEecCCCceeEecccchhhccCCcccccccccccccChHHhhcccCCCcceeecccceEEEeh
Confidence            9999999999999999999984458999999999876443        27899999888888899999999999999999


Q ss_pred             HhCCCCChh---hhhhhhhhhccCCChhHHHHHHHHHh-ccCCCCC-CC--CcccccCCCHHHHHHHHHhhhcCcCCCCC
Q 005958          318 VLRELMDPL---IFTKFKSFLTKGIDPSCLREFLLQVL-NRNSSSG-NT--GFQILDRNWGAGWNLLSLLLATKPSKRIS  390 (667)
Q Consensus       318 ltG~~PF~~---~~~~~~~~~~~g~~~~~l~~~~~~~~-~~~~~~~-~~--~~~~~~~~s~e~~dLI~~~L~~DP~kRpS  390 (667)
                      ++|++||..   .+++..++...|.+............ ....+.. ..  .....+..++++++||.+||++||++|||
T Consensus       217 ~~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~t  296 (350)
T d1q5ka_         217 LLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLT  296 (350)
T ss_dssp             HHTSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCC---CCCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCC
T ss_pred             hhCCCCCCCCCHHHHHHHHHHHhCCChHHhhhhhccchhhccccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcC
Confidence            999999973   34455555666766544332221111 1111100 00  01123467899999999999999999999


Q ss_pred             HHHHHcCCCCCCCCC
Q 005958          391 CLDALRHPFLCGPRW  405 (667)
Q Consensus       391 a~elL~HPwf~~~~~  405 (667)
                      |.|+|+||||++...
T Consensus       297 a~e~L~Hp~f~~~~~  311 (350)
T d1q5ka_         297 PLEACAHSFFDELRD  311 (350)
T ss_dssp             HHHHHTSGGGGGGGC
T ss_pred             HHHHhcCHhhccccC
Confidence            999999999988653

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-49  Score=421.69  Aligned_cols=273  Identities=21%  Similarity=0.294  Sum_probs=209.1

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      -++|+++++||+|+||    +||+|+++.     +|+.||||++++.    ...+.+.+|+++|++++      |||||+
T Consensus        17 ~~~Y~~i~~lG~G~fg----~V~~~~~~~-----~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~------hpniv~   81 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAYG----AVCSAVDGR-----TGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMR------HENVIG   81 (346)
T ss_dssp             BSSEEEEEEC----------CEEEEEETT-----TCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCC------BTTBCC
T ss_pred             CCcEEEEEEEecCCCe----EEEEEEECC-----CCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcC------CCCeeE
Confidence            4789999999999999    999999998     8999999999752    22356789999999995      999999


Q ss_pred             EEEEEEeccc-CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          161 VHGYVSSHTT-SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       161 l~~~~~~~~~-~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++|..... .....+||||| |++. +|..+++..          .|++                    ..++.+++|
T Consensus        82 l~~~~~~~~~~~~~~~~~lv~e-~~~~-~l~~~~~~~----------~l~~--------------------~~~~~~~~q  129 (346)
T d1cm8a_          82 LLDVFTPDETLDDFTDFYLVMP-FMGT-DLGKLMKHE----------KLGE--------------------DRIQFLVYQ  129 (346)
T ss_dssp             CSEEECSCSSTTTCCCCEEEEE-CCSE-EHHHHHHHC----------CCCH--------------------HHHHHHHHH
T ss_pred             EEEEeccCccccccceEEEEEe-cccc-cHHHHHHhc----------cccH--------------------HHHHHHHHH
Confidence            9999974321 23446899999 9965 888887653          4665                    457889999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC------CCCCCCcccccCCCCCCchhhHHHHHHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  313 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------~~~Y~APE~l~~~~~ys~ksDIWSLGvi  313 (667)
                      |+.||+|||++||+||||||+|||++. ++.+||+|||+|+.....      .+.|+|||++.+...++.++||||+||+
T Consensus       130 i~~aL~~LH~~~IiHrDiKp~NIL~~~-~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvi  208 (346)
T d1cm8a_         130 MLKGLRYIHAAGIIHRDLKPGNLAVNE-DCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCI  208 (346)
T ss_dssp             HHHHHHHHHHTTEECCCCCGGGEEECT-TCCEEECCCTTCEECCSSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcccccCcchhhccc-ccccccccccceeccCCccccccccccccCHHHHcCCCCCCccchhhcchHH
Confidence            999999999999999999999999998 999999999999876543      3789999988888888999999999999


Q ss_pred             HHHHHhCCCCChhh---hhhhhhhhccCCChhHHHHHH-----HHHhccCCCCCCCC-cccccCCCHHHHHHHHHhhhcC
Q 005958          314 MAKMVLRELMDPLI---FTKFKSFLTKGIDPSCLREFL-----LQVLNRNSSSGNTG-FQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       314 LyemltG~~PF~~~---~~~~~~~~~~g~~~~~l~~~~-----~~~~~~~~~~~~~~-~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      +|||++|++||...   ..+.......+.++....+..     .............. .......+++++|||.+||++|
T Consensus       209 l~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~d  288 (346)
T d1cm8a_         209 MAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLD  288 (346)
T ss_dssp             HHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSS
T ss_pred             HHHHHHCcCCCCCCChHHHHHHHHhccCCCcHHHHhhhcchhhhhhhccCCcccccchHHhccCCCHHHHHHHHHHCcCC
Confidence            99999999999742   233333334444443322111     11111111111111 2345678999999999999999


Q ss_pred             cCCCCCHHHHHcCCCCCCCCC
Q 005958          385 PSKRISCLDALRHPFLCGPRW  405 (667)
Q Consensus       385 P~kRpSa~elL~HPwf~~~~~  405 (667)
                      |++||||+|+|+||||++...
T Consensus       289 P~~R~ta~eiL~Hp~f~~~~~  309 (346)
T d1cm8a_         289 AEQRVTAGEALAHPYFESLHD  309 (346)
T ss_dssp             TTTSCCHHHHHHSGGGTTTC-
T ss_pred             hhHCcCHHHHhcChhhCcCCC
Confidence            999999999999999998763

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.7e-49  Score=410.00  Aligned_cols=247  Identities=17%  Similarity=0.221  Sum_probs=204.2

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      .+++..++|++.+.||+|+||    +||+|+++.     +++.||||+++... ..+++.+|+++|++++      ||||
T Consensus        11 ~wei~~~~~~~~~~iG~G~fg----~Vy~a~~~~-----~~~~vAvK~i~~~~~~~~~~~~E~~il~~l~------HpnI   75 (287)
T d1opja_          11 KWEMERTDITMKHKLGGGQYG----EVYEGVWKK-----YSLTVAVKTLKEDTMEVEEFLKEAAVMKEIK------HPNL   75 (287)
T ss_dssp             TTBCCGGGEEEEEETTTTTTS----SEEEEEEGG-----GTEEEEEEECCTTCSCHHHHHHHHHHHHHCC------CTTB
T ss_pred             ccEecHHHeEEeeEEeeCCCe----EEEEEEECC-----CCeEEEEEEECCccchHHHHHHHHHHHHhCC------CCCE
Confidence            456677899999999999999    999999998     79999999997643 3456899999999995      9999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      |++++++.     +.+.+||||| ||++|+|.+++.....       ..+++                    ..+..|+.
T Consensus        76 v~~~~~~~-----~~~~~~iv~E-~~~~g~l~~~l~~~~~-------~~~~~--------------------~~~~~i~~  122 (287)
T d1opja_          76 VQLLGVCT-----REPPFYIITE-FMTYGNLLDYLRECNR-------QEVSA--------------------VVLLYMAT  122 (287)
T ss_dssp             CCEEEEEC-----SSSSCEEEEE-CCTTCBHHHHHHHSCT-------TTSCH--------------------HHHHHHHH
T ss_pred             ecCCccEe-----eCCeeEEEee-cccCcchHHHhhhccc-------cchHH--------------------HHHHHHHH
Confidence            99999998     7788999999 9999999999976431       23444                    45788999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC----------CCCCCcccccCCCCCCchhhHH
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG----------PNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~----------~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      ||+.||+|||++||+||||||+|||++. ++.+||+|||+|+......          +.|+|||++. ...|+.++|||
T Consensus       123 qi~~gL~yLH~~~iiHrDlKp~NILl~~-~~~~Kl~DFG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~-~~~~~~k~Diw  200 (287)
T d1opja_         123 QISSAMEYLEKKNFIHRDLAARNCLVGE-NHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLA-YNKFSIKSDVW  200 (287)
T ss_dssp             HHHHHHHHHHHTTCCCSCCSGGGEEECG-GGCEEECCCCCTTTCCSSSSEEETTEEECGGGCCHHHHH-HCCCSHHHHHH
T ss_pred             HHHHHHHHHHHCCcccCccccCeEEECC-CCcEEEccccceeecCCCCceeeccccccccccChHHHc-CCCCCchhhhh
Confidence            9999999999999999999999999998 8999999999998765432          5699999655 45699999999


Q ss_pred             HHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCC
Q 005958          309 CVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  388 (667)
Q Consensus       309 SLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kR  388 (667)
                      ||||++|||++|..||.           .+.+...+.+.+....         ..+.+..+++++++||.+||+.||++|
T Consensus       201 S~Gv~l~ell~~~~p~~-----------~~~~~~~~~~~i~~~~---------~~~~~~~~~~~l~~li~~cl~~dP~~R  260 (287)
T d1opja_         201 AFGVLLWEIATYGMSPY-----------PGIDLSQVYELLEKDY---------RMERPEGCPEKVYELMRACWQWNPSDR  260 (287)
T ss_dssp             HHHHHHHHHHTTSCCSS-----------TTCCHHHHHHHHHTTC---------CCCCCTTCCHHHHHHHHHHTCSSGGGS
T ss_pred             hHHHHHHHHHhCCCCCC-----------CcchHHHHHHHHhcCC---------CCCCCccchHHHHHHHHHHcCCCHhHC
Confidence            99999999999766542           2333333333332211         123445788999999999999999999


Q ss_pred             CCHHHHHc
Q 005958          389 ISCLDALR  396 (667)
Q Consensus       389 pSa~elL~  396 (667)
                      ||++|+++
T Consensus       261 ps~~ei~~  268 (287)
T d1opja_         261 PSFAEIHQ  268 (287)
T ss_dssp             CCHHHHHH
T ss_pred             cCHHHHHH
Confidence            99999976

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-48  Score=411.86  Aligned_cols=262  Identities=20%  Similarity=0.236  Sum_probs=198.6

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      +++|+++++||+|+||    +||+|++..     +|+.||||++....    ....+.+|+++|++++      ||||++
T Consensus         9 ~~rY~i~~~LG~G~fg----~Vy~a~~~~-----~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~------h~nii~   73 (318)
T d3blha1           9 VSKYEKLAKIGQGTFG----EVFKARHRK-----TGQKVALKKVLMENEKEGFPITALREIKILQLLK------HENVVN   73 (318)
T ss_dssp             GGGEEEEEEEEECSSS----EEEEEEETT-----TCCEEEEEEC----CTTSSCHHHHHHHHHHHHCC------CTTBCC
T ss_pred             cCCEEEEEEEecCcCe----EEEEEEECC-----CCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhc------CCCccc
Confidence            5899999999999999    999999997     89999999986532    2356789999999995      999999


Q ss_pred             EEEEEEecc---cCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          161 VHGYVSSHT---TSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       161 l~~~~~~~~---~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      +++++....   ....+.+|+||| |++++.+..+.....         .+++                    ..++.++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~iv~e-~~~~~~~~~~~~~~~---------~~~~--------------------~~~~~i~  123 (318)
T d3blha1          74 LIEICRTKASPYNRCKGSIYLVFD-FCEHDLAGLLSNVLV---------KFTL--------------------SEIKRVM  123 (318)
T ss_dssp             EEEEEEC----------CEEEEEE-CCCEEHHHHHTCTTC---------CCCH--------------------HHHHHHH
T ss_pred             eEeeeecccccccccCceEEEEEe-ccCCCccchhhhccc---------cccc--------------------HHHHHHH
Confidence            999986321   113567999999 999855544333222         3443                    5678899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-------------CCCCCCCcccccCCCCCCch
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-------------DGPNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-------------~~~~Y~APE~l~~~~~ys~k  304 (667)
                      +||+.||.|||++||+||||||+|||++. ++.+||+|||+|+.+..             +++.|+|||++.+...|+.+
T Consensus       124 ~qil~~l~~lH~~~ivHrDlKp~NILl~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k  202 (318)
T d3blha1         124 QMLLNGLYYIHRNKILHRDMKAANVLITR-DGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPP  202 (318)
T ss_dssp             HHHHHHHHHHHHTTEECCCCCGGGEEECT-TSCEEECCCTTCEECCC-----CCCCCSCCSCGGGCCHHHHTTCSSCCTH
T ss_pred             HHHHHHHHHhccCCEEecCcCchheeecC-CCcEEeeecceeeecccccccccccccceecCHHHhhHHHHcCCCCCCcH
Confidence            99999999999999999999999999998 89999999999975542             23679999988888889999


Q ss_pred             hhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCc-----------------cc--
Q 005958          305 FDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGF-----------------QI--  365 (667)
Q Consensus       305 sDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~-----------------~~--  365 (667)
                      +||||+||++|||++|++||.+            .........+........+......                 ..  
T Consensus       203 ~DiwSlGvil~el~~g~~pf~~------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (318)
T d3blha1         203 IDLWGAGCIMAEMWTRSPIMQG------------NTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKD  270 (318)
T ss_dssp             HHHHHHHHHHHHHHHSSCSCCC------------SSHHHHHHHHHHHHCCCCTTTSTTCCCC-------CCSSCCBCHHH
T ss_pred             HHcccCCceeeeHhhCCCCCCC------------CCHHHHHHHHHHhcCCCChhhccccchhhhhhhhcccccccccchh
Confidence            9999999999999999999962            2222222222222222111110000                 00  


Q ss_pred             ---ccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          366 ---LDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       366 ---~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                         ....+++++|||.+||++||++||||+|+|+||||+..+
T Consensus       271 ~~~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~Hpff~~~p  312 (318)
T d3blha1         271 RLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDP  312 (318)
T ss_dssp             HHHHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGSSSS
T ss_pred             hhccccCCHHHHHHHHHHCcCChhHCcCHHHHHcChhhccCC
Confidence               012467899999999999999999999999999998753

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-48  Score=415.10  Aligned_cols=271  Identities=18%  Similarity=0.217  Sum_probs=204.6

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ++|++++.||+|+||    +||+|+++.     +++.||||++.+..   ..+.+.+|+++|++++      ||||++++
T Consensus         8 ~rY~~~~~LG~G~fg----~Vy~~~~~~-----~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~------hp~iv~~~   72 (345)
T d1pmea_           8 PRYTNLSYIGEGAYG----MVCSAYDNV-----NKVRVAIKKISPFEHQTYCQRTLREIKILLRFR------HENIIGIN   72 (345)
T ss_dssp             TTEEEEEECC---CC----CEEEEEETT-----TCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCC------CTTBCCCC
T ss_pred             CCeEEEEEEeeccCe----EEEEEEECC-----CCcEEEEEEEehhcChHHHHHHHHHHHHHHHcC------CCCCCcEE
Confidence            579999999999999    999999988     89999999997532   3346789999999994      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++..+.......+|++|+ ++ +|+|.+++...          .++|                    ..++.++.||+.
T Consensus        73 ~~~~~~~~~~~~~~~l~~~-~~-~g~L~~~l~~~----------~l~~--------------------~~i~~i~~qil~  120 (345)
T d1pmea_          73 DIIRAPTIEQMKDVYLVTH-LM-GADLYKLLKTQ----------HLSN--------------------DHICYFLYQILR  120 (345)
T ss_dssp             EEECCSSTTTCCCEEEEEE-CC-CEEHHHHHHHC----------CCCH--------------------HHHHHHHHHHHH
T ss_pred             EEEeeccccccceEEEEEe-ec-CCchhhhhhcC----------CCCH--------------------HHHHHHHHHHHH
Confidence            9997543334455677666 55 56999999764          4555                    467889999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC------------CCCCCCCcccccCCCCCCchhhHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE------------DGPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~------------~~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      ||+|||++|||||||||+|||++. ++.+||+|||+|.....            +.+.|+|||++.....|+.++||||+
T Consensus       121 al~yLH~~~iiHRDIKp~NILl~~-~~~~kl~DfG~a~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSl  199 (345)
T d1pmea_         121 GLKYIHSANVLHRDLKPSNLLLNT-TCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSV  199 (345)
T ss_dssp             HHHHHHHTTEECCCCCGGGEEECT-TCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHH
T ss_pred             HHHHHHHCCCcCCCCCcceEEECC-CCCEEEcccCceeeccCCCccceeeccccccceechHHHhhcCCCCCchhhhhcc
Confidence            999999999999999999999998 89999999999975432            22679999987777889999999999


Q ss_pred             HHHHHHHHhCCCCChhh---hhhhhhhhccCCChhHHH------HHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhh
Q 005958          311 GFMMAKMVLRELMDPLI---FTKFKSFLTKGIDPSCLR------EFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLL  381 (667)
Q Consensus       311 GviLyemltG~~PF~~~---~~~~~~~~~~g~~~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L  381 (667)
                      ||++|||++|++||...   +.........+.+.....      .....................+..++++++||.+||
T Consensus       200 G~il~eml~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L  279 (345)
T d1pmea_         200 GCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKML  279 (345)
T ss_dssp             HHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHS
T ss_pred             CceehHHhhCCCCCCCCCHHHHHHHHhhhccCCChhhhhhhhhhhhhcccccCCccCCCCHHHhCCCCCHHHHHHHHHHc
Confidence            99999999999999732   122222222222221110      000011111111111111345678899999999999


Q ss_pred             hcCcCCCCCHHHHHcCCCCCCCC
Q 005958          382 ATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       382 ~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      ++||++||||+|+|+||||+...
T Consensus       280 ~~dP~~R~ta~e~L~hpf~~~~~  302 (345)
T d1pmea_         280 TFNPHKRIEVEQALAHPYLEQYY  302 (345)
T ss_dssp             CSSTTTSCCHHHHHTSGGGTTTC
T ss_pred             cCChhHCcCHHHHhcCHhhccCC
Confidence            99999999999999999998754

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-48  Score=412.08  Aligned_cols=272  Identities=14%  Similarity=0.107  Sum_probs=205.4

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      +++..++|++++.||+|+||    +||+|++...........||+|.+....   ....+.+|+.+|.++.     +|||
T Consensus        32 wei~~~~~~l~~~lG~G~fG----~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~Hpn  102 (325)
T d1rjba_          32 WEFPRENLEFGKVLGSGAFG----KVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLG-----SHEN  102 (325)
T ss_dssp             GBCCGGGEEEEEEEEECSSE----EEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHC-----CCTT
T ss_pred             ccCCHHHeEEeeEEeeCCCe----EEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhc-----CCCc
Confidence            45666899999999999999    9999999874333345689999986532   3345789999999995     5999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcC--CCCCCCCCccccHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVG--DDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~--~~~~~~~~~~~~~~~i~~  235 (667)
                      ||++++++.     +.+.+||||| ||++|+|.++|+.+..        .+++.......  .-........++...++.
T Consensus       103 Iv~l~~~~~-----~~~~~~lv~E-y~~~g~L~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  168 (325)
T d1rjba_         103 IVNLLGACT-----LSGPIYLIFE-YCCYGDLLNYLRSKRE--------KFSEDEIEYENQKRLEEEEDLNVLTFEDLLC  168 (325)
T ss_dssp             BCCEEEEEC-----SSSSCEEEEE-CCTTCBHHHHHHTTTT--------CC---------------------CCHHHHHH
T ss_pred             EeEEEEEEe-----eCCeEEEEEE-cCCCCcHHHHHHhccC--------CCcchhhhhccccccccccccCCCCHHHHHH
Confidence            999999998     7788999999 9999999999987542        11111100000  000011123455678899


Q ss_pred             HHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCch
Q 005958          236 LMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       236 i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~k  304 (667)
                      |+.||+.||+|||++|||||||||+|||++. ++.+||+|||+|+.....           ++.|||||++. ...|+.+
T Consensus       169 i~~qi~~gl~yLH~~~IiHRDlKp~Nill~~-~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~-~~~~~~~  246 (325)
T d1rjba_         169 FAYQVAKGMEFLEFKSCVHRDLAARNVLVTH-GKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLF-EGIYTIK  246 (325)
T ss_dssp             HHHHHHHHHHHHHHTTEEETTCSGGGEEEET-TTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHH-HCCCCHH
T ss_pred             HHHHHHHHHHHHHhCCeeeccCchhcccccc-CCeEEEeeccccccccCCCceeeeccccCCCccCChHHHc-CCCCCcc
Confidence            9999999999999999999999999999998 899999999999765433           25799999654 4569999


Q ss_pred             hhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhc
Q 005958          305 FDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLAT  383 (667)
Q Consensus       305 sDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~  383 (667)
                      +|||||||++|||++ |++||.+.           .....+.+.+....         ..+.+..+++++++||.+||+.
T Consensus       247 ~DiwS~Gvil~emlt~g~~Pf~~~-----------~~~~~~~~~~~~~~---------~~~~p~~~~~~l~~li~~cl~~  306 (325)
T d1rjba_         247 SDVWSYGILLWEIFSLGVNPYPGI-----------PVDANFYKLIQNGF---------KMDQPFYATEEIYIIMQSCWAF  306 (325)
T ss_dssp             HHHHHHHHHHHHHTTTSCCSSTTC-----------CCSHHHHHHHHTTC---------CCCCCTTCCHHHHHHHHHHTCS
T ss_pred             eeccchhHHHHHHHhCCCCCCCCC-----------CHHHHHHHHHhcCC---------CCCCCCcCCHHHHHHHHHHcCC
Confidence            999999999999997 89999632           11222333322211         1234457889999999999999


Q ss_pred             CcCCCCCHHHHHcC
Q 005958          384 KPSKRISCLDALRH  397 (667)
Q Consensus       384 DP~kRpSa~elL~H  397 (667)
                      ||++|||++||++|
T Consensus       307 dP~~RPt~~ei~~~  320 (325)
T d1rjba_         307 DSRKRPSFPNLTSF  320 (325)
T ss_dssp             SGGGSCCHHHHHHH
T ss_pred             ChhHCcCHHHHHHH
Confidence            99999999999986

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-48  Score=397.59  Aligned_cols=241  Identities=16%  Similarity=0.173  Sum_probs=192.4

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      ..++|++++.||+|+||    +||+|++.      +++.||||+++... ..+++.+|++++++++      |||||+++
T Consensus         3 dp~~~~~~~~iG~G~fg----~Vy~~~~~------~~~~vAvK~i~~~~~~~~~~~~E~~~l~~l~------HpnIv~~~   66 (263)
T d1sm2a_           3 DPSELTFVQEIGSGQFG----LVHLGYWL------NKDKVAIKTIREGAMSEEDFIEEAEVMMKLS------HPKLVQLY   66 (263)
T ss_dssp             CCSCEEEEEEEECCSSC----CEEEEEET------TTEEEEEEECCSSSSCHHHHHHHHHHHHHCC------CTTBCCEE
T ss_pred             ChHHcEEEEEEeeCCCe----EEEEEEEC------CCCEEEEEEECCCcCcHHHHHHHHHHHHhcC------CCCccccc
Confidence            34789999999999999    99999987      46789999997633 4467899999999995      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     ..+.+|+||| |+++|+|.+++....        ..+++                    ..+..|+.||+.
T Consensus        67 g~~~-----~~~~~~lv~E-~~~~g~L~~~l~~~~--------~~~~~--------------------~~~~~i~~qia~  112 (263)
T d1sm2a_          67 GVCL-----EQAPICLVFE-FMEHGCLSDYLRTQR--------GLFAA--------------------ETLLGMCLDVCE  112 (263)
T ss_dssp             EEEC-----SSSSCEEEEE-CCTTCBHHHHHHTTT--------TCCCH--------------------HHHHHHHHHHHH
T ss_pred             ceec-----cCCceEEEEE-ecCCCcHHHHhhccc--------cCCCH--------------------HHHHHHHHHHHH
Confidence            9998     7788999999 999999999987643        13444                    456779999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC----------CCCCCCcccccCCCCCCchhhHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED----------GPNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~----------~~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      ||+|||+++|+||||||+|||++. ++.+||+|||+|+.....          .+.|+|||++. ...|+.++|||||||
T Consensus       113 gl~~lH~~~iiHrDlKp~Nill~~-~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~l~-~~~~~~k~DVwS~Gv  190 (263)
T d1sm2a_         113 GMAYLEEACVIHRDLAARNCLVGE-NQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFS-FSRYSSKSDVWSFGV  190 (263)
T ss_dssp             HHHHHHHTTCCCTTCSGGGEEECG-GGCEEECSCC------------------CTTSCCHHHHT-TCCCCHHHHHHHHHH
T ss_pred             HHHhhhccceeecccchhheeecC-CCCeEecccchheeccCCCceeecceecCcccCChHHhc-CCCCCchhhhcchHH
Confidence            999999999999999999999998 899999999999865432          26799999654 556999999999999


Q ss_pred             HHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH
Q 005958          313 MMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC  391 (667)
Q Consensus       313 iLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa  391 (667)
                      ++|||++ |.+||.            +....++.+.+.....         ...+..+++++.+||.+||+.||++|||+
T Consensus       191 il~el~t~~~~~~~------------~~~~~~~~~~i~~~~~---------~~~p~~~~~~l~~li~~cl~~~p~~Rps~  249 (263)
T d1sm2a_         191 LMWEVFSEGKIPYE------------NRSNSEVVEDISTGFR---------LYKPRLASTHVYQIMNHCWKERPEDRPAF  249 (263)
T ss_dssp             HHHHHHTTSCCTTC------------SCCHHHHHHHHHHTCC---------CCCCTTSCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             HHHHHHHCCCCCCC------------CCCHHHHHHHHHhcCC---------CCCccccCHHHHHHHHHHccCCHhHCcCH
Confidence            9999999 466653            2233333333322111         12234578899999999999999999999


Q ss_pred             HHHHcC
Q 005958          392 LDALRH  397 (667)
Q Consensus       392 ~elL~H  397 (667)
                      +|+++|
T Consensus       250 ~~il~~  255 (263)
T d1sm2a_         250 SRLLRQ  255 (263)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999986

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-48  Score=412.46  Aligned_cols=259  Identities=17%  Similarity=0.260  Sum_probs=208.6

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch------hhHHHHHHHHHHHHHHhhccCCCC
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV------QAQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~------~~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      .+.+++|++++.||+|+||    +||+|++...  ..+|+.||||++++.      ...+.+.+|+++|++++     +|
T Consensus        20 ~~~l~~y~~~~~IG~G~fg----~Vy~~~~~~~--~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~-----h~   88 (322)
T d1vzoa_          20 KVGIENFELLKVLGTGAYG----KVFLVRKISG--HDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIR-----QS   88 (322)
T ss_dssp             CCCGGGEEEEEEEEETTTE----EEEEEEECSS--TTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHH-----TC
T ss_pred             ccchhceEEEEEEecCCCe----EEEEEEECcc--CCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhcc-----CC
Confidence            3467999999999999999    9999998542  127899999998752      12345689999999997     46


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      |||+++++++.     +...+++||| |+.+|+|.+++...+         .+.|                    ..++.
T Consensus        89 pnIv~~~~~~~-----~~~~~~~v~e-~~~~~~L~~~i~~~~---------~~~e--------------------~~~~~  133 (322)
T d1vzoa_          89 PFLVTLHYAFQ-----TETKLHLILD-YINGGELFTHLSQRE---------RFTE--------------------HEVQI  133 (322)
T ss_dssp             TTBCCEEEEEE-----ETTEEEEEEC-CCCSCBHHHHHHHHS---------CCCH--------------------HHHHH
T ss_pred             CeEEEeeeeec-----cCCceeeeee-cccccHHHHHHHhcc---------cccH--------------------HHHHH
Confidence            99999999999     7789999999 999999999998765         4444                    45778


Q ss_pred             HHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC----------CCCCCCcccccCCC-CCCch
Q 005958          236 LMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED----------GPNNSSPDSNMDRR-QMMIA  304 (667)
Q Consensus       236 i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~----------~~~Y~APE~l~~~~-~ys~k  304 (667)
                      ++.||+.||+|||++||+||||||+|||++. ++.+||+|||+|+.+...          .+.|+|||.+.+.. .++.+
T Consensus       134 ~~~Qi~~al~~lH~~~ivHrDiKp~Nill~~-~~~vkL~DFG~a~~~~~~~~~~~~~~~g~~~~~~pe~~~~~~~~~~~k  212 (322)
T d1vzoa_         134 YVGEIVLALEHLHKLGIIYRDIKLENILLDS-NGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKA  212 (322)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCCGGGEEECT-TSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTH
T ss_pred             HHHHHHHHHHHhhcCCEEeccCCccceeecC-CCCEEEeeccchhhhcccccccccccccccccchhHHhhcCCcCCCch
Confidence            9999999999999999999999999999998 899999999999765332          37899999776543 57889


Q ss_pred             hhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          305 FDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       305 sDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      +|||||||+||||++|++||....           ................       .+.+..+++++++||.+||++|
T Consensus       213 sDIWSlG~iLyelltG~~PF~~~~-----------~~~~~~~i~~~~~~~~-------~~~~~~~s~~~~~li~~~l~~d  274 (322)
T d1vzoa_         213 VDWWSLGVLMYELLTGASPFTVDG-----------EKNSQAEISRRILKSE-------PPYPQEMSALAKDLIQRLLMKD  274 (322)
T ss_dssp             HHHHHHHHHHHHHHHSSCTTSCTT-----------SCCCHHHHHHHHHHCC-------CCCCTTSCHHHHHHHHHHTCSS
T ss_pred             hhhHHHHHHHHHHHhCCCCCCCCC-----------HHHHHHHHHHhcccCC-------CCCcccCCHHHHHHHHHHcccC
Confidence            999999999999999999995221           1111222222222221       1234568999999999999999


Q ss_pred             cCCCC-----CHHHHHcCCCCCCCCC
Q 005958          385 PSKRI-----SCLDALRHPFLCGPRW  405 (667)
Q Consensus       385 P~kRp-----Sa~elL~HPwf~~~~~  405 (667)
                      |++||     |++|+|+||||+++.|
T Consensus       275 P~~R~s~~~~t~~eil~Hpff~~i~~  300 (322)
T d1vzoa_         275 PKKRLGCGPRDADEIKEHLFFQKINW  300 (322)
T ss_dssp             GGGSTTSSTTTHHHHHTSGGGTTCCH
T ss_pred             HHHcCCCCcccHHHHHcCHhhcCCCH
Confidence            99999     5899999999998774

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-48  Score=412.51  Aligned_cols=273  Identities=17%  Similarity=0.210  Sum_probs=205.4

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      .++|+++++||+|+||    +||+|++..     +|+.||||++.+.    ...+.+.+|+++|++++      |||||+
T Consensus        17 ~~rY~i~~~LG~G~fg----~Vy~a~~~~-----~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~------h~~iv~   81 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYG----SVCAAFDTK-----TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMK------HENVIG   81 (348)
T ss_dssp             ETTEEEEEECGGGTTS----SEEEEEETT-----TTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCC------CTTBCC
T ss_pred             CCCeEEEEEEecCCCe----EEEEEEECC-----CCCEEEEEEECchhcChHHHHHHHHHHHHHHhcC------CCCeee
Confidence            3789999999999999    999999998     8999999999753    23346789999999995      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++......+....+++|+ ++.+|+|.+++...          +++|                    ..++.+++||
T Consensus        82 ~~~~~~~~~~~~~~~~~~i~~-~~~gg~L~~~~~~~----------~l~e--------------------~~~~~i~~qi  130 (348)
T d2gfsa1          82 LLDVFTPARSLEEFNDVYLVT-HLMGADLNNIVKCQ----------KLTD--------------------DHVQFLIYQI  130 (348)
T ss_dssp             CSEEECSCSSTTTCCCCEEEE-ECCSEEHHHHHTTC----------CCCH--------------------HHHHHHHHHH
T ss_pred             EEEEEeeccccccCceEEEEE-eecCCchhhhcccc----------cccH--------------------HHHHHHHHHH
Confidence            999997443223334455566 56677999998653          4665                    4578899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC------CCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG------PNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~------~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      +.||+|||++||+||||||+|||++. ++.+|++|||+|.......      +.|+|||++.+...++.++|||||||++
T Consensus       131 l~aL~~LH~~giiHrDiKp~NILi~~-~~~~kl~dfg~a~~~~~~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l  209 (348)
T d2gfsa1         131 LRGLKYIHSADIIHRDLKPSNLAVNE-DCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIM  209 (348)
T ss_dssp             HHHHHHHHHTTCCCCCCCGGGEEECT-TCCEEECCC----CCTGGGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcccccCCccccccc-cccccccccchhcccCcccccccccccccCchhhcCCccCCcccchhhhhHHH
Confidence            99999999999999999999999998 8999999999997654432      6799999888888889999999999999


Q ss_pred             HHHHhCCCCChhh---hhhhhhhhccCCChhHHHHH-----HHHHhccCCCCCCCCc-ccccCCCHHHHHHHHHhhhcCc
Q 005958          315 AKMVLRELMDPLI---FTKFKSFLTKGIDPSCLREF-----LLQVLNRNSSSGNTGF-QILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       315 yemltG~~PF~~~---~~~~~~~~~~g~~~~~l~~~-----~~~~~~~~~~~~~~~~-~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      |+|++|++||.+.   .....+....+.........     ...............+ ......+++++|||.+||++||
T Consensus       210 ~~ll~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP  289 (348)
T d2gfsa1         210 AELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDS  289 (348)
T ss_dssp             HHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCCCHHHHHHHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSG
T ss_pred             HHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhccchhhhhhhhhcccCCCcchhhhcCCCCHHHHHHHHHHCcCCh
Confidence            9999999999732   22222223333332221110     0111111111111111 2345689999999999999999


Q ss_pred             CCCCCHHHHHcCCCCCCCC
Q 005958          386 SKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       386 ~kRpSa~elL~HPwf~~~~  404 (667)
                      ++||||+|+|+||||++..
T Consensus       290 ~~R~ta~elL~Hp~f~~~~  308 (348)
T d2gfsa1         290 DKRITAAQALAHAYFAQYH  308 (348)
T ss_dssp             GGSCCHHHHHTSGGGTTTC
T ss_pred             hhCcCHHHHhcCHhhCCCC
Confidence            9999999999999999764

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-48  Score=402.84  Aligned_cols=247  Identities=17%  Similarity=0.191  Sum_probs=195.4

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcc----hhhHHHHHHHHHHHHHHhhccCCCCC
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS----VQAQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~----~~~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      +++..++|++++.||+|+||    +||+|+..        ..||||+++.    ....+.+.+|+++|++++      ||
T Consensus         3 wei~~~~~~~~~~lG~G~fg----~Vy~~~~~--------~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~------Hp   64 (276)
T d1uwha_           3 WEIPDGQITVGQRIGSGSFG----TVYKGKWH--------GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTR------HV   64 (276)
T ss_dssp             CBCCTTCCCCCSEEEECSSC----EEEEEESS--------SEEEEEECCCSSCCTTHHHHHHHHHHHHTTCC------CT
T ss_pred             cccccccEEEEEEEeeCCCc----EEEEEEEC--------CEEEEEEEEcccCCHHHHHHHHHHHHHHHhCC------CC
Confidence            45667899999999999999    99999744        3599999874    233456789999999995      99


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      |||++++++.      .+.++|||| ||++|+|.+++...+        ..+++                    ..+..|
T Consensus        65 nIv~~~~~~~------~~~~~lv~E-y~~~g~L~~~l~~~~--------~~~~~--------------------~~~~~i  109 (276)
T d1uwha_          65 NILLFMGYST------APQLAIVTQ-WCEGSSLYHHLHIIE--------TKFEM--------------------IKLIDI  109 (276)
T ss_dssp             TBCCEEEEEC------SSSCEEEEE-CCCEEEHHHHHHTSC--------CCCCH--------------------HHHHHH
T ss_pred             CEeeeeEEEe------ccEEEEEEe-cCCCCCHHHHHhhcc--------CCCCH--------------------HHHHHH
Confidence            9999999864      356899999 999999999997643        14554                    456789


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC-----------CCCCCCCcccccC--CCCCCc
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE-----------DGPNNSSPDSNMD--RRQMMI  303 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~-----------~~~~Y~APE~l~~--~~~ys~  303 (667)
                      +.||+.||+|||++|||||||||+|||++. ++.+||+|||+|+....           +++.|||||++.+  ...|+.
T Consensus       110 ~~qi~~gl~yLH~~~ivHrDlKp~NiLl~~-~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~~~  188 (276)
T d1uwha_         110 ARQTAQGMDYLHAKSIIHRDLKSNNIFLHE-DLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSF  188 (276)
T ss_dssp             HHHHHHHHHHHHHTTCCCSCCCGGGEEEET-TSSEEECCCCCSCC------------CCCCGGGCCHHHHTTCSSCCCCH
T ss_pred             HHHHHHHHHHHhcCCEeccccCHHHEEEcC-CCCEEEccccceeeccccCCcccccccccCcccCCHHHHhcccCCCCCc
Confidence            999999999999999999999999999998 89999999999976532           2367999997654  346899


Q ss_pred             hhhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhc
Q 005958          304 AFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLAT  383 (667)
Q Consensus       304 ksDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~  383 (667)
                      ++|||||||++|||++|+.||.+.           .+...+...+......  +   ........+++++++||.+||+.
T Consensus       189 ~sDiwS~Gv~l~el~tg~~Pf~~~-----------~~~~~~~~~~~~~~~~--p---~~~~~~~~~~~~l~~li~~cl~~  252 (276)
T d1uwha_         189 QSDVYAFGIVLYELMTGQLPYSNI-----------NNRDQIIFMVGRGYLS--P---DLSKVRSNCPKAMKRLMAECLKK  252 (276)
T ss_dssp             HHHHHHHHHHHHHHHHSSCTTTTC-----------CCHHHHHHHHHHTSCC--C---CGGGSCTTCCHHHHHHHHHHTCS
T ss_pred             hhhhhhhHHHHHHHHHCCCCCCCC-----------ChHHHHHHHHhcCCCC--C---cchhccccchHHHHHHHHHHcCC
Confidence            999999999999999999999632           1122222222221111  0   11223456789999999999999


Q ss_pred             CcCCCCCHHHHHcC
Q 005958          384 KPSKRISCLDALRH  397 (667)
Q Consensus       384 DP~kRpSa~elL~H  397 (667)
                      ||++|||++|+++|
T Consensus       253 dp~~RPt~~~il~~  266 (276)
T d1uwha_         253 KRDERPLFPQILAS  266 (276)
T ss_dssp             SGGGSCCHHHHHHH
T ss_pred             CHhHCcCHHHHHHH
Confidence            99999999999976

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-48  Score=401.22  Aligned_cols=249  Identities=16%  Similarity=0.219  Sum_probs=199.5

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      .+++..++|++.+.||+|+||    +||+|+++      +++.||||+++... ..+.+.+|+++|++++      ||||
T Consensus         7 ~wei~~~~~~~~~~iG~G~fg----~Vy~~~~~------~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~------HpnI   70 (272)
T d1qpca_           7 EWEVPRETLKLVERLGAGQFG----EVWMGYYN------GHTKVAVKSLKQGSMSPDAFLAEANLMKQLQ------HQRL   70 (272)
T ss_dssp             TTBCCGGGEEEEEEEEEETTE----EEEEEEET------TTEEEEEEEECTTSSCHHHHHHHHHHHHHCC------CTTB
T ss_pred             CeecCHHHeEEeEEEecCCCc----EEEEEEEC------CCCEEEEEEEccCcCCHHHHHHHHHHHHhCC------CCCE
Confidence            445566899999999999999    99999986      47889999997633 3456899999999995      9999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      |++++++.      .+.+||||| |+++|+|.+++....       ...+++                    ..+..|+.
T Consensus        71 v~~~g~~~------~~~~~iv~E-y~~~g~L~~~~~~~~-------~~~l~~--------------------~~~~~i~~  116 (272)
T d1qpca_          71 VRLYAVVT------QEPIYIITE-YMENGSLVDFLKTPS-------GIKLTI--------------------NKLLDMAA  116 (272)
T ss_dssp             CCEEEEEC------SSSCEEEEE-CCTTCBHHHHTTSHH-------HHTCCH--------------------HHHHHHHH
T ss_pred             eEEEeeec------cCCeEEEEE-eCCCCcHHHHHhhcC-------CCCCCH--------------------HHHHHHHH
Confidence            99999875      345799999 999999999875432       113454                    45778999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC----------CCCCCcccccCCCCCCchhhHH
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG----------PNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~----------~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      ||+.||.|||++||+||||||+|||++. ++.+||+|||+|+......          +.|+|||++. ...|+.++|||
T Consensus       117 qi~~gl~~lH~~~ivHrDiKp~NIll~~-~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~APE~~~-~~~~~~~sDvw  194 (272)
T d1qpca_         117 QIAEGMAFIEERNYIHRDLRAANILVSD-TLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAIN-YGTFTIKSDVW  194 (272)
T ss_dssp             HHHHHHHHHHHTTEECSCCSGGGEEECT-TSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHH-HCEECHHHHHH
T ss_pred             HHHHHHHHHHhCCcccCccchhheeeec-ccceeeccccceEEccCCccccccccCCcccccChHHHh-CCCCCchhhhh
Confidence            9999999999999999999999999998 8999999999998764332          5799999654 45689999999


Q ss_pred             HHHHHHHHHHhC-CCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          309 CVGFMMAKMVLR-ELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       309 SLGviLyemltG-~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      ||||++|||+|| .+||.            +.....+...+.   ...      ....+..+++++++||.+||+.||++
T Consensus       195 S~Gvvl~ellt~~~~~~~------------~~~~~~~~~~i~---~~~------~~~~p~~~~~~l~~li~~cl~~~P~~  253 (272)
T d1qpca_         195 SFGILLTEIVTHGRIPYP------------GMTNPEVIQNLE---RGY------RMVRPDNCPEELYQLMRLCWKERPED  253 (272)
T ss_dssp             HHHHHHHHHHTTTCCSST------------TCCHHHHHHHHH---TTC------CCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             hhHHHHHHHHhCCCCCCC------------CCCHHHHHHHHH---hcC------CCCCcccChHHHHHHHHHHcCCCHhH
Confidence            999999999995 55543            222222222222   111      12234568899999999999999999


Q ss_pred             CCCHHHHHc--CCCCC
Q 005958          388 RISCLDALR--HPFLC  401 (667)
Q Consensus       388 RpSa~elL~--HPwf~  401 (667)
                      |||++|+++  |+||.
T Consensus       254 Rpt~~ei~~~L~~~ft  269 (272)
T d1qpca_         254 RPTFDYLRSVLEDFFT  269 (272)
T ss_dssp             SCCHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHhhhhhh
Confidence            999999998  77774

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1e-47  Score=402.12  Aligned_cols=246  Identities=16%  Similarity=0.148  Sum_probs=192.2

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      +..++|++.+.||+|+||    +||+|+++.++.  ....||||.+...   ...+.+.+|+++|++++      |||||
T Consensus        23 i~~~~~~~~~~lG~G~fg----~Vy~~~~~~~~~--~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~------HpnIv   90 (299)
T d1jpaa_          23 IDISCVKIEQVIGAGEFG----EVCSGHLKLPGK--REIFVAIKTLKSGYTEKQRRDFLSEASIMGQFD------HPNVI   90 (299)
T ss_dssp             CCGGGEEEEEEEEECSSS----EEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCC------CTTBC
T ss_pred             hChhhcEEeeEEeeCCCe----EEEEEEEeCCCC--EEEEEEEEEECcccCHHHHHHHHHHHHHHHhCC------CCCCc
Confidence            456789999999999999    999999986210  2236899998652   23456789999999995      99999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++.     ..+.+|+||| ||++|+|.+++....        ..+++                    ..+..|+.|
T Consensus        91 ~l~g~~~-----~~~~~~iv~E-y~~~g~L~~~~~~~~--------~~l~~--------------------~~~~~i~~q  136 (299)
T d1jpaa_          91 HLEGVVT-----KSTPVMIITE-FMENGSLDSFLRQND--------GQFTV--------------------IQLVGMLRG  136 (299)
T ss_dssp             CEEEEEC-----SSSSCEEEEE-CCTTEEHHHHHHTTT--------TCSCH--------------------HHHHHHHHH
T ss_pred             cEEEEEe-----eCCEEEEEEE-ecCCCcceeeecccc--------CCCCH--------------------HHHHHHHHH
Confidence            9999998     7788999999 999999999988643        13554                    456789999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------------CCCCCCcccccCCCCCCchh
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------------GPNNSSPDSNMDRRQMMIAF  305 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------------~~~Y~APE~l~~~~~ys~ks  305 (667)
                      |+.||.|||++||+||||||+|||++. ++.+||+|||+|+.....              .+.|+|||.+. ...|+.++
T Consensus       137 ia~gl~yLH~~~iiHrDlKp~NILl~~-~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~s  214 (299)
T d1jpaa_         137 IAAGMKYLADMNYVHRDLAARNILVNS-NLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQ-YRKFTSAS  214 (299)
T ss_dssp             HHHHHHHHHHTTCCCSCCCGGGEEECT-TCCEEECCC-----------------------CGGGSCHHHHH-SCCCCHHH
T ss_pred             HHHHHHHHhhCCCccCccccceEEECC-CCcEEECCcccceEccCCCCcceeeecccccCCccccCHHHHh-cCCCCccc
Confidence            999999999999999999999999998 899999999999865432              25699999654 45699999


Q ss_pred             hHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          306 DMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       306 DIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      |||||||++|||++ |++||.+            .....+...+..   .      ...+....+++++.+||.+||+.|
T Consensus       215 DvwS~Gvvl~el~t~g~~Pf~~------------~~~~~~~~~i~~---~------~~~~~~~~~~~~l~~li~~cl~~~  273 (299)
T d1jpaa_         215 DVWSYGIVMWEVMSYGERPYWD------------MTNQDVINAIEQ---D------YRLPPPMDCPSALHQLMLDCWQKD  273 (299)
T ss_dssp             HHHHHHHHHHHHHTTSCCTTTT------------CCHHHHHHHHHT---T------CCCCCCTTCCHHHHHHHHHHTCSS
T ss_pred             ccccchHHHHHHHhCCCCCCCC------------CCHHHHHHHHHc---C------CCCCCCccchHHHHHHHHHHcCCC
Confidence            99999999999998 8999852            233333333221   1      112334568899999999999999


Q ss_pred             cCCCCCHHHHHcC
Q 005958          385 PSKRISCLDALRH  397 (667)
Q Consensus       385 P~kRpSa~elL~H  397 (667)
                      |++|||+.|++++
T Consensus       274 P~~RPs~~ei~~~  286 (299)
T d1jpaa_         274 RNHRPKFGQIVNT  286 (299)
T ss_dssp             TTTSCCHHHHHHH
T ss_pred             HhHCcCHHHHHHH
Confidence            9999999998864

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-47  Score=397.82  Aligned_cols=248  Identities=16%  Similarity=0.186  Sum_probs=197.2

Q ss_pred             cccCCeEEEeE-eccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           83 FNMGDFKILDR-VSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        83 ~~~~~y~i~~~-LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      +..++|.+.+. ||+|+||    +||+|.++..+   ++..||||+++..   ...+.+.+|+++|++++      ||||
T Consensus         5 l~~~~~~~~~~~iG~G~fg----~Vy~~~~~~~~---~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~------HpnI   71 (285)
T d1u59a_           5 LKRDNLLIADIELGCGNFG----SVRQGVYRMRK---KQIDVAIKVLKQGTEKADTEEMMREAQIMHQLD------NPYI   71 (285)
T ss_dssp             CCGGGEEEEEEEEECCTTE----EEEEEEEC------CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCC------CTTB
T ss_pred             ecccCeEECCcEEecccCe----EEEEEEEecCC---CcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCC------CCCE
Confidence            34467889885 9999999    99999886522   4568999999753   23456789999999995      9999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      |++++++.     . +.+||||| ||++|+|.+++...+        ..+++                    ..+..|+.
T Consensus        72 v~l~g~~~-----~-~~~~lvmE-~~~~g~L~~~l~~~~--------~~l~~--------------------~~~~~i~~  116 (285)
T d1u59a_          72 VRLIGVCQ-----A-EALMLVME-MAGGGPLHKFLVGKR--------EEIPV--------------------SNVAELLH  116 (285)
T ss_dssp             CCEEEEEE-----S-SSEEEEEE-CCTTEEHHHHHTTCT--------TTSCH--------------------HHHHHHHH
T ss_pred             eeEeeeec-----c-CeEEEEEE-eCCCCcHHHHhhccc--------cCCCH--------------------HHHHHHHH
Confidence            99999987     3 35899999 999999999986542        14554                    45778999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC------------CCCCCcccccCCCCCCchhh
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG------------PNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~------------~~Y~APE~l~~~~~ys~ksD  306 (667)
                      ||+.||+|||++||+||||||+|||++. ++.+||+|||+|+.+....            +.|+|||++. ...|+.++|
T Consensus       117 qi~~gL~ylH~~~iiHrDlKp~Nill~~-~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~ksD  194 (285)
T d1u59a_         117 QVSMGMKYLEEKNFVHRDLAARNVLLVN-RHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECIN-FRKFSSRSD  194 (285)
T ss_dssp             HHHHHHHHHHHTTEECCCCSGGGEEEEE-TTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHH-HCEECHHHH
T ss_pred             HHHHHHHHHHhCCeecCcCchhheeecc-CCceeeccchhhhcccccccccccccccccCccccChHHHh-CCCCCccch
Confidence            9999999999999999999999999998 8999999999998654322            4699999654 456999999


Q ss_pred             HHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCc
Q 005958          307 MRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       307 IWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      ||||||++|||++ |++||.+            ....++...+..   ..      ..+.++.+++++.+||.+||+.||
T Consensus       195 VwS~Gv~l~E~lt~G~~Pf~~------------~~~~~~~~~i~~---~~------~~~~p~~~~~~l~~li~~cl~~~p  253 (285)
T d1u59a_         195 VWSYGVTMWEALSYGQKPYKK------------MKGPEVMAFIEQ---GK------RMECPPECPPELYALMSDCWIYKW  253 (285)
T ss_dssp             HHHHHHHHHHHHTTSCCTTTT------------CCTHHHHHHHHT---TC------CCCCCTTCCHHHHHHHHHTTCSSG
T ss_pred             hhcchHHHHHHHhCCCCCCCC------------CCHHHHHHHHHc---CC------CCCCCCcCCHHHHHHHHHHcCCCH
Confidence            9999999999998 8999952            222233333221   11      123456788999999999999999


Q ss_pred             CCCCCHHHH---HcCCCCC
Q 005958          386 SKRISCLDA---LRHPFLC  401 (667)
Q Consensus       386 ~kRpSa~el---L~HPwf~  401 (667)
                      ++|||+.++   |+|+|+.
T Consensus       254 ~~RPs~~~i~~~L~~~~~~  272 (285)
T d1u59a_         254 EDRPDFLTVEQRMRACYYS  272 (285)
T ss_dssp             GGSCCHHHHHHHHHHHHHH
T ss_pred             hHCcCHHHHHHHHHHHHHH
Confidence            999999887   5677763

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.1e-47  Score=394.81  Aligned_cols=250  Identities=16%  Similarity=0.149  Sum_probs=196.6

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-----hHHHHHHHHHHHHHHhhccCCCCCcce
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIv  159 (667)
                      .++|++.+.||+|+||    +||+|++..     +++.||||++++..     ....+.+|+++|+.+      +|||||
T Consensus         6 ~drY~i~~~lG~G~fg----~Vy~a~~~~-----~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~------~hpniv   70 (277)
T d1o6ya_           6 SDRYELGEILGFGGMS----EVHLARDLR-----LHRDVAVKVLRADLARDPSFYLRFRREAQNAAAL------NHPAIV   70 (277)
T ss_dssp             TTTEEEEEEEEECSSE----EEEEEEETT-----TTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTC------CCTTBC
T ss_pred             cceeEEeEEEeeCCCe----EEEEEEECC-----CCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhc------CCCCCC
Confidence            3779999999999999    999999998     89999999997522     234578999999998      499999


Q ss_pred             EEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          160 QVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++++.... .....+||||| ||+||+|.+++...+         .++++                    .++.|+.|
T Consensus        71 ~~~~~~~~~~-~~~~~~~lvmE-~~~g~~L~~~~~~~~---------~l~~~--------------------~~~~i~~q  119 (277)
T d1o6ya_          71 AVYDTGEAET-PAGPLPYIVME-YVDGVTLRDIVHTEG---------PMTPK--------------------RAIEVIAD  119 (277)
T ss_dssp             CEEEEEEEEC-SSSEEEEEEEE-CCCEEEHHHHHHHHC---------SCCHH--------------------HHHHHHHH
T ss_pred             cccceeeecc-CCCceEEEEEE-CCCCCEehhhhcccC---------CCCHH--------------------HHHHHHHH
Confidence            9999997441 13346899999 999999999998765         56654                    56789999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC------------CCCCCCCcccccCCCCCCchhhH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE------------DGPNNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~------------~~~~Y~APE~l~~~~~ys~ksDI  307 (667)
                      |+.||+|||++||+||||||+|||++. ++.++|+|||.+.....            +.+.|+|||++ ....|+.++||
T Consensus       120 i~~al~~lH~~~iiHrDiKP~NIll~~-~~~~~l~d~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~-~~~~~~~~~Di  197 (277)
T d1o6ya_         120 ACQALNFSHQNGIIHRDVKPANIMISA-TNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQA-RGDSVDARSDV  197 (277)
T ss_dssp             HHHHHHHHHHTTEECCCCSGGGEEEET-TSCEEECCCTTCEECC----------------TTCCHHHH-TTCCCCHHHHH
T ss_pred             HHHHHHHHHhCCccCccccCcccccCc-cccceeehhhhhhhhccccccccccccccCcccccCHHHH-cCCCCCcceec
Confidence            999999999999999999999999998 89999999999865432            23789999965 45569999999


Q ss_pred             HHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          308 RCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       308 WSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      |||||++|||++|++||.+            ..+...   +...+.....   ......+.+++++++||.+||++||++
T Consensus       198 wSlGvilyelltG~~Pf~~------------~~~~~~---~~~~~~~~~~---~~~~~~~~~s~~l~~li~~~L~~dp~~  259 (277)
T d1o6ya_         198 YSLGCVLYEVLTGEPPFTG------------DSPVSV---AYQHVREDPI---PPSARHEGLSADLDAVVLKALAKNPEN  259 (277)
T ss_dssp             HHHHHHHHHHHHSSCSCCC------------SSHHHH---HHHHHHCCCC---CGGGTSSSCCHHHHHHHHHHTCSSGGG
T ss_pred             ccchHHHHHHHhCCCCCCC------------cCHHHH---HHHHHhcCCC---CCchhccCCCHHHHHHHHHHccCCHhH
Confidence            9999999999999999952            222221   1122221111   112334678999999999999999999


Q ss_pred             CCCHHHHHcCCCC
Q 005958          388 RISCLDALRHPFL  400 (667)
Q Consensus       388 RpSa~elL~HPwf  400 (667)
                      ||+..+.|.|+|+
T Consensus       260 R~~sa~~l~~~l~  272 (277)
T d1o6ya_         260 RYQTAAEMRADLV  272 (277)
T ss_dssp             SCSSHHHHHHHHH
T ss_pred             CHhHHHHHHHHHH
Confidence            9954444445553

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-47  Score=396.96  Aligned_cols=241  Identities=16%  Similarity=0.188  Sum_probs=192.5

Q ss_pred             eEEE-eEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh----hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           88 FKIL-DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        88 y~i~-~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      +.+. ++||+|+||    +||+|.+....   +++.||||+++...    ..+.+.+|+++|++++      |||||+++
T Consensus         8 ~~le~k~iG~G~fG----~Vy~~~~~~~~---~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~------HpnIv~~~   74 (277)
T d1xbba_           8 LTLEDKELGSGNFG----TVKKGYYQMKK---VVKTVAVKILKNEANDPALKDELLAEANVMQQLD------NPYIVRMI   74 (277)
T ss_dssp             EEEEEEEEEECSSE----EEEEEEEECSS---SEEEEEEEEEC-----CHHHHHHHHHHHHHHTCC------CTTBCCEE
T ss_pred             CeecCCCcccCCCe----EEEEEEEccCC---cCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCC------CCCCceEE
Confidence            3443 479999999    99999876421   57899999997532    2356789999999994      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     . +..+|||| ||++|+|.+++.+..         .+++                    ..+..|+.||+.
T Consensus        75 g~~~-----~-~~~~lvmE-~~~~g~L~~~l~~~~---------~l~~--------------------~~~~~i~~qi~~  118 (277)
T d1xbba_          75 GICE-----A-ESWMLVME-MAELGPLNKYLQQNR---------HVKD--------------------KNIIELVHQVSM  118 (277)
T ss_dssp             EEEE-----S-SSEEEEEE-CCTTEEHHHHHHHCT---------TCCH--------------------HHHHHHHHHHHH
T ss_pred             EEec-----c-CCEEEEEE-cCCCCcHHHHHhhcc---------CCCH--------------------HHHHHHHHHHHH
Confidence            9987     3 34789999 999999999998764         4555                    456789999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC------------CCCCCCcccccCCCCCCchhhHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED------------GPNNSSPDSNMDRRQMMIAFDMRCV  310 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------------~~~Y~APE~l~~~~~ys~ksDIWSL  310 (667)
                      ||+|||++||+||||||+|||++. ++.+||+|||+|+.+...            .+.|+|||++. ...|+.++|||||
T Consensus       119 gl~ylH~~~iiHrDlKp~Nill~~-~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l~-~~~~~~~sDiwS~  196 (277)
T d1xbba_         119 GMKYLEESNFVHRDLAARNVLLVT-QHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECIN-YYKFSSKSDVWSF  196 (277)
T ss_dssp             HHHHHHHTTEECSCCSGGGEEEEE-TTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHH-HCEEEHHHHHHHH
T ss_pred             HHhhHHhCCcccCCCcchhhcccc-cCcccccchhhhhhccccccccccccccCCCceecCchhhc-CCCCCchhhhccc
Confidence            999999999999999999999998 899999999999865432            25799999654 4568999999999


Q ss_pred             HHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCC
Q 005958          311 GFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  389 (667)
Q Consensus       311 GviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRp  389 (667)
                      ||++|||++ |++||.            +....++...+..   .      ...+.+..+++++++||.+||+.||++||
T Consensus       197 Gv~l~ellt~g~~Pf~------------~~~~~~~~~~i~~---~------~~~~~p~~~~~~~~~li~~cl~~dp~~RP  255 (277)
T d1xbba_         197 GVLMWEAFSYGQKPYR------------GMKGSEVTAMLEK---G------ERMGCPAGCPREMYDLMNLCWTYDVENRP  255 (277)
T ss_dssp             HHHHHHHHTTTCCSST------------TCCHHHHHHHHHT---T------CCCCCCTTCCHHHHHHHHHHTCSSTTTSC
T ss_pred             hhhhhHHhhCCCCCCC------------CCCHHHHHHHHHc---C------CCCCCCcccCHHHHHHHHHHcCCCHhHCc
Confidence            999999998 899985            2233333333321   1      11234457889999999999999999999


Q ss_pred             CHHHH---HcCCCC
Q 005958          390 SCLDA---LRHPFL  400 (667)
Q Consensus       390 Sa~el---L~HPwf  400 (667)
                      |++++   |+|+|+
T Consensus       256 s~~~i~~~L~~~~~  269 (277)
T d1xbba_         256 GFAAVELRLRNYYY  269 (277)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhhCHHh
Confidence            99998   566665

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-47  Score=394.67  Aligned_cols=259  Identities=15%  Similarity=0.175  Sum_probs=204.6

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      ..+++..++|++++.||+|+||    +||+|+++.      ++.||||+++... ..+.+.+|+.+|++++      |||
T Consensus        10 ~~~~i~~~~~~i~~~iG~G~fg----~Vy~~~~~~------~~~vAiK~l~~~~~~~~~~~~E~~~l~~l~------h~n   73 (285)
T d1fmka3          10 DAWEIPRESLRLEVKLGQGCFG----EVWMGTWNG------TTRVAIKTLKPGTMSPEAFLQEAQVMKKLR------HEK   73 (285)
T ss_dssp             TCSBCCGGGEEEEEEEEECSSC----EEEEEEETT------TEEEEEEECCTTSSCHHHHHHHHHHHHHCC------CTT
T ss_pred             cceEcCHHHEEEeeEEeeCCCe----EEEEEEECC------CCEEEEEEECcccCCHHHHHHHHHHHHhcc------cCC
Confidence            4566778999999999999999    999999975      5679999997633 3456899999999994      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      ||++++++.     + +.+++||| |+++|+|.+++....       ...+++                    ..+..|+
T Consensus        74 Iv~~~g~~~-----~-~~~~lv~E-y~~~g~l~~~~~~~~-------~~~l~~--------------------~~~~~i~  119 (285)
T d1fmka3          74 LVQLYAVVS-----E-EPIYIVTE-YMSKGSLLDFLKGET-------GKYLRL--------------------PQLVDMA  119 (285)
T ss_dssp             BCCEEEEEC-----S-SSCEEEEC-CCTTCBHHHHHSHHH-------HTTCCH--------------------HHHHHHH
T ss_pred             EeEEEEEEe-----c-CCeEEEEE-ecCCCchhhhhhhcc-------cccchH--------------------HHHHHHH
Confidence            999999986     3 45789999 999999999986531       113554                    4578899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC----------CCCCCCcccccCCCCCCchhhH
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED----------GPNNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~----------~~~Y~APE~l~~~~~ys~ksDI  307 (667)
                      .||+.||+|||++||+||||||+||||+. ++.+||+|||+|+.....          .+.|+|||++. ...++.++||
T Consensus       120 ~~i~~gl~~LH~~~ivH~DlKp~NIll~~-~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~ksDI  197 (285)
T d1fmka3         120 AQIASGMAYVERMNYVHRDLRAANILVGE-NLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAAL-YGRFTIKSDV  197 (285)
T ss_dssp             HHHHHHHHHHHHTTCCCSCCSGGGEEECG-GGCEEECCCCTTC--------------CCGGGSCHHHHH-HCCCCHHHHH
T ss_pred             HHHHHHHHHHhhhheecccccceEEEECC-CCcEEEcccchhhhccCCCceeeccccccccccChHHHh-CCCCCcHHhh
Confidence            99999999999999999999999999998 899999999999765332          26799999654 5568999999


Q ss_pred             HHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          308 RCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       308 WSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      |||||++|||++|..||.           .+....++...+....         ..+..+.+++++++||.+||+.||++
T Consensus       198 ~S~Giil~el~t~~~p~~-----------~~~~~~~~~~~i~~~~---------~~~~~~~~~~~l~~li~~cl~~dP~~  257 (285)
T d1fmka3         198 WSFGILLTELTTKGRVPY-----------PGMVNREVLDQVERGY---------RMPCPPECPESLHDLMCQCWRKEPEE  257 (285)
T ss_dssp             HHHHHHHHHHHTTTCCSS-----------TTCCHHHHHHHHHTTC---------CCCCCTTSCHHHHHHHHHHTCSSGGG
T ss_pred             hcchHHHHHHHhCCCCCC-----------CCCCHHHHHHHHHhcC---------CCCCCcccCHHHHHHHHHHcccCHhH
Confidence            999999999999654442           2333333333322211         12345678899999999999999999


Q ss_pred             CCCHHHHHc--CCCCCCCCCCCCC
Q 005958          388 RISCLDALR--HPFLCGPRWRVDP  409 (667)
Q Consensus       388 RpSa~elL~--HPwf~~~~~~~~~  409 (667)
                      |||++++++  |+||........|
T Consensus       258 Rps~~~i~~~L~~~~~~~~p~~~p  281 (285)
T d1fmka3         258 RPTFEYLQAFLEDYFTSTEPQYQP  281 (285)
T ss_dssp             SCCHHHHHHHHHTTTSCSCCCCCC
T ss_pred             CcCHHHHHHHHhhhhcCCCCCCCC
Confidence            999999998  8999876543333

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-47  Score=391.60  Aligned_cols=241  Identities=16%  Similarity=0.178  Sum_probs=199.0

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-hhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      +.++|+++++||+|+||    +||+|+++      +++.||||+++.. ...+.+.+|+.++++++      ||||++++
T Consensus         2 ~~~~~~~~~~iG~G~fg----~Vy~~~~~------~~~~vAvK~l~~~~~~~~~~~~Ev~~~~~l~------HpnIv~~~   65 (258)
T d1k2pa_           2 DPKDLTFLKELGTGQFG----VVKYGKWR------GQYDVAIKMIKEGSMSEDEFIEEAKVMMNLS------HEKLVQLY   65 (258)
T ss_dssp             CCCCCCCCCCCCEETTE----EEEEEEET------TTEEEEEEEEESSSSCHHHHHHHHHHHHTCC------CTTBCCEE
T ss_pred             ChHHCEEeEEEecCCCe----EEEEEEEC------CCCEEEEEEECcCcCCHHHHHHHHHHHHhcC------CCceeeEE
Confidence            34789999999999999    99999986      5789999999863 34567899999999995      99999999


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  242 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~  242 (667)
                      +++.     +.+.+++||| |+++|+|.+++....        ..+++                    ..+..++.||++
T Consensus        66 g~~~-----~~~~~~iv~E-y~~~g~l~~~~~~~~--------~~~~~--------------------~~~~~i~~qi~~  111 (258)
T d1k2pa_          66 GVCT-----KQRPIFIITE-YMANGCLLNYLREMR--------HRFQT--------------------QQLLEMCKDVCE  111 (258)
T ss_dssp             EEEC-----CSSSEEEEEE-CCTTEEHHHHHHSGG--------GCCCH--------------------HHHHHHHHHHHH
T ss_pred             EEEe-----eCCceEEEEE-ccCCCcHHHhhhccc--------cCCcH--------------------HHHHHHHHHHHH
Confidence            9998     7788999999 999999999987542        13443                    457789999999


Q ss_pred             HHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC----------CCCCCcccccCCCCCCchhhHHHHHH
Q 005958          243 GVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG----------PNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       243 aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~----------~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      ||+|||++||+||||||+|||++. ++.+||+|||+|+......          +.|+|||++. ...|+.++|||||||
T Consensus       112 gl~~LH~~~iiH~dlk~~Nill~~-~~~~kl~DfG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~ksDiwS~G~  189 (258)
T d1k2pa_         112 AMEYLESKQFLHRDLAARNCLVND-QGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLM-YSKFSSKSDIWAFGV  189 (258)
T ss_dssp             HHHHHHHTTBCCSCCSGGGEEECT-TCCEEECCCSSCCBCSSSSCCCCCCSCCCGGGCCHHHHH-HCCCCHHHHHHHHHH
T ss_pred             HHHHHhhcCcccccccceeEEEcC-CCcEEECcchhheeccCCCceeecccCCCCCcCCcHHhc-CCCCCcceeecccch
Confidence            999999999999999999999998 8999999999997654322          5699999554 456999999999999


Q ss_pred             HHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCH
Q 005958          313 MMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC  391 (667)
Q Consensus       313 iLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa  391 (667)
                      ++|||++ |+.||.            +....++...+....         ....+...++++++||.+||+.||++|||+
T Consensus       190 ~l~el~t~g~~Pf~------------~~~~~~~~~~i~~~~---------~~~~p~~~~~~l~~li~~cl~~dP~~RPt~  248 (258)
T d1k2pa_         190 LMWEIYSLGKMPYE------------RFTNSETAEHIAQGL---------RLYRPHLASEKVYTIMYSCWHEKADERPTF  248 (258)
T ss_dssp             HHHHHHTTSCCTTT------------TSCHHHHHHHHHTTC---------CCCCCTTCCHHHHHHHHHTTCSSGGGSCCH
T ss_pred             hhHhHHhcCCCCCC------------CCCHHHHHHHHHhCC---------CCCCcccccHHHHHHHHHHccCCHhHCcCH
Confidence            9999998 899985            223333333322211         123345678899999999999999999999


Q ss_pred             HHHHcC
Q 005958          392 LDALRH  397 (667)
Q Consensus       392 ~elL~H  397 (667)
                      +++|+|
T Consensus       249 ~eil~~  254 (258)
T d1k2pa_         249 KILLSN  254 (258)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999987

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-47  Score=395.09  Aligned_cols=268  Identities=16%  Similarity=0.130  Sum_probs=197.1

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      +++..++|+++++||+|+||    .||+|++.......+++.||||+++..   ...+.+.+|+.++.++.     +|+|
T Consensus         8 wei~~~~y~~~~~iG~G~fG----~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~-----~h~~   78 (299)
T d1ywna1           8 WEFPRDRLKLGKPLGRGAFG----QVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIG-----HHLN   78 (299)
T ss_dssp             HBCCGGGEEEEEEEEECSSC----EEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHC-----CCTT
T ss_pred             ccccHHHEEEeeEEeecCCe----EEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhc-----CCCe
Confidence            34555889999999999999    999999987655567889999998753   23455688899999986     6999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+.+++++.    ..+..+++||| ||++|+|.++|........-   ....+.          ......++...++.|+
T Consensus        79 iv~~~~~~~----~~~~~~~iv~E-~~~~g~L~~~l~~~~~~~~~---~~~~~~----------~~~~~~l~~~~~~~~~  140 (299)
T d1ywna1          79 VVNLLGACT----KPGGPLMVIVE-FCKFGNLSTYLRSKRNEFVP---YKVAPE----------DLYKDFLTLEHLICYS  140 (299)
T ss_dssp             BCCEEEEEC----STTSCCEEEEE-CCTTCBHHHHHHHTGGGBCC------------------------CBCHHHHHHHH
T ss_pred             EEEeeeeec----cCCCeEEEEEE-ecCCCcHHHHHHhccccccc---cccchh----------hhhcccCCHHHHHHHH
Confidence            999999886    24567899999 99999999999875321100   000000          0011234557789999


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhh
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksD  306 (667)
                      .||+.||+|||++||+||||||+|||++. ++++||+|||+|+.....           ++.|+|||++. ...|+.++|
T Consensus       141 ~qi~~gl~ylH~~~ivHrDlKp~NILl~~-~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~-~~~~~~~sD  218 (299)
T d1ywna1         141 FQVAKGMEFLASRKCIHRDLAARNILLSE-KNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIF-DRVYTIQSD  218 (299)
T ss_dssp             HHHHHHHHHHHHTTCCCSCCCGGGEEECG-GGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHH-HCCCCHHHH
T ss_pred             HHHHHHHHHHHhCCCcCCcCCccceeECC-CCcEEEccCcchhhccccccccccCceeeCccccchhHhh-cCCCCcccc
Confidence            99999999999999999999999999998 899999999999754322           25799999655 456999999


Q ss_pred             HHHHHHHHHHHHhC-CCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCc
Q 005958          307 MRCVGFMMAKMVLR-ELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       307 IWSLGviLyemltG-~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      ||||||++|||++| .+||...           .....+...+....         ..+.+..+++++++||.+||+.||
T Consensus       219 iwS~Gvil~ellt~~~~p~~~~-----------~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~li~~cl~~dP  278 (299)
T d1ywna1         219 VWSFGVLLWEIFSLGASPYPGV-----------KIDEEFCRRLKEGT---------RMRAPDYTTPEMYQTMLDCWHGEP  278 (299)
T ss_dssp             HHHHHHHHHHHHTTSCCSSTTC-----------CCSHHHHHHHHHTC---------CCCCCTTCCHHHHHHHHHHTCSSG
T ss_pred             eeehHHHHHHHHhCCCCCCCCC-----------CHHHHHHHHHhcCC---------CCCCCccCCHHHHHHHHHHcCCCh
Confidence            99999999999986 5677521           11222223222211         123345688999999999999999


Q ss_pred             CCCCCHHHHHcC
Q 005958          386 SKRISCLDALRH  397 (667)
Q Consensus       386 ~kRpSa~elL~H  397 (667)
                      ++|||++|+++|
T Consensus       279 ~~Rpt~~eil~~  290 (299)
T d1ywna1         279 SQRPTFSELVEH  290 (299)
T ss_dssp             GGSCCHHHHHHH
T ss_pred             hHCcCHHHHHHH
Confidence            999999999987

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-47  Score=389.92  Aligned_cols=246  Identities=15%  Similarity=0.175  Sum_probs=191.5

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      ++..++|++++.||+|+||    +||+|++...+  ..+..||||.++..   ...+.+.+|+++|++++      ||||
T Consensus         3 ei~~~~~~l~~~iG~G~fg----~Vy~a~~~~~~--~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~------HpnI   70 (273)
T d1mp8a_           3 EIQRERIELGRCIGEGQFG----DVHQGIYMSPE--NPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD------HPHI   70 (273)
T ss_dssp             BCCGGGEEEEEEEEECSSS----EEEEEEECCC----CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCC------CTTB
T ss_pred             CcCHHHeEEEEEEeeCCCc----EEEEEEEecCC--ceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCC------CCCE
Confidence            4556899999999999999    99999987521  13567999998652   23356789999999994      9999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      |++++++.      .+.+|+||| |+++|+|.+++....        ..+++                    ..++.++.
T Consensus        71 v~l~~~~~------~~~~~iv~E-~~~~g~l~~~~~~~~--------~~l~~--------------------~~~~~~~~  115 (273)
T d1mp8a_          71 VKLIGVIT------ENPVWIIME-LCTLGELRSFLQVRK--------YSLDL--------------------ASLILYAY  115 (273)
T ss_dssp             CCEEEEEC------SSSCEEEEE-CCTTEEHHHHHHHTT--------TTSCH--------------------HHHHHHHH
T ss_pred             eeEEEEEe------cCeEEEEEE-eccCCcHHhhhhccC--------CCCCH--------------------HHHHHHHH
Confidence            99999985      356899999 999999999987643        24554                    45788999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC----------CCCCCCcccccCCCCCCchhhHH
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED----------GPNNSSPDSNMDRRQMMIAFDMR  308 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~----------~~~Y~APE~l~~~~~ys~ksDIW  308 (667)
                      ||+.||.|||++||+||||||+||+++. ++.+||+|||+|+.....          .+.|+|||++ ....|+.++|||
T Consensus       116 qi~~gl~ylH~~~iiHrDlKp~NIll~~-~~~~Kl~DfG~a~~~~~~~~~~~~~~~gt~~y~apE~l-~~~~~~~~~Diw  193 (273)
T d1mp8a_         116 QLSTALAYLESKRFVHRDIAARNVLVSS-NDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESI-NFRRFTSASDVW  193 (273)
T ss_dssp             HHHHHHHHHHHTTCCCSCCSGGGEEEEE-TTEEEECC-------------------CCGGGCCHHHH-HHCCCSHHHHHH
T ss_pred             HHHHHhhhhcccCeeccccchhheeecC-CCcEEEccchhheeccCCcceeccceecCcccchhhHh-ccCCCCCccccc
Confidence            9999999999999999999999999998 899999999999865432          2579999955 455699999999


Q ss_pred             HHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          309 CVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       309 SLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      ||||++|||++ |.+||.            +.....+...+..   ..      ..+.++.+++++++||.+||+.||++
T Consensus       194 SlGvil~e~lt~g~~P~~------------~~~~~~~~~~i~~---~~------~~~~~~~~~~~~~~li~~cl~~dp~~  252 (273)
T d1mp8a_         194 MFGVCMWEILMHGVKPFQ------------GVKNNDVIGRIEN---GE------RLPMPPNCPPTLYSLMTKCWAYDPSR  252 (273)
T ss_dssp             HHHHHHHHHHTTSCCTTT------------TCCGGGHHHHHHT---TC------CCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             cchHHHHHHHhcCCCCCC------------CCCHHHHHHHHHc---CC------CCCCCCCCCHHHHHHHHHHcCCCHhH
Confidence            99999999998 899985            2233333333221   11      12345678999999999999999999


Q ss_pred             CCCHHHHHcC
Q 005958          388 RISCLDALRH  397 (667)
Q Consensus       388 RpSa~elL~H  397 (667)
                      |||+.|+++|
T Consensus       253 Rps~~ei~~~  262 (273)
T d1mp8a_         253 RPRFTELKAQ  262 (273)
T ss_dssp             SCCHHHHHHH
T ss_pred             CcCHHHHHHH
Confidence            9999999875

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-46  Score=402.46  Aligned_cols=270  Identities=21%  Similarity=0.269  Sum_probs=199.0

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch----hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      +++|+++++||+|+||    +||+|+++.     +|+.||||++...    .....+.+|+.+|++++      |||||+
T Consensus        16 ~~~Y~i~~~LG~G~fg----~V~~~~d~~-----t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~------hpnIv~   80 (355)
T d2b1pa1          16 LKRYQNLKPIGSGAQG----IVCAAYDAV-----LDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVN------HKNIIS   80 (355)
T ss_dssp             ETTEEEEEECSCC--C----EEEEEEETT-----TTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCC------CTTBCC
T ss_pred             cCCeEEEEEeecCcCe----EEEEEEECC-----CCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcC------CCCeeE
Confidence            4789999999999999    999999998     8999999999753    23345789999999994      999999


Q ss_pred             EEEEEEeccc-CCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHH
Q 005958          161 VHGYVSSHTT-SGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  239 (667)
Q Consensus       161 l~~~~~~~~~-~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~Q  239 (667)
                      ++++|..... +...++|+||| ||.+ +|.+.+..           .+++                    ..++.+++|
T Consensus        81 ~~~~f~~~~~~~~~~~~~iv~E-y~~~-~l~~~~~~-----------~~~~--------------------~~i~~~~~q  127 (355)
T d2b1pa1          81 LLNVFTPQKTLEEFQDVYLVME-LMDA-NLCQVIQM-----------ELDH--------------------ERMSYLLYQ  127 (355)
T ss_dssp             CSEEECSCCSTTTCCEEEEEEE-CCSE-EHHHHHTS-----------CCCH--------------------HHHHHHHHH
T ss_pred             EEEEEecccccccCceeEEEEe-ccch-HHHHhhhc-----------CCCH--------------------HHHHHHHHH
Confidence            9999974422 25579999999 9987 66666542           4554                    457889999


Q ss_pred             HHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC--------CCCCCCcccccCCCCCCchhhHHHHH
Q 005958          240 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVG  311 (667)
Q Consensus       240 Il~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~--------~~~Y~APE~l~~~~~ys~ksDIWSLG  311 (667)
                      |+.||.|||++||+||||||+|||++. ++.+|++|||+++.....        ++.|+|||++.+ ..|+.++||||+|
T Consensus       128 il~gl~~LH~~giiHrDlKP~Nil~~~-~~~~kl~df~~~~~~~~~~~~~~~~~t~~y~aPE~l~~-~~~~~~~DiwSlG  205 (355)
T d2b1pa1         128 MLCGIKHLHSAGIIHRDLKPSNIVVKS-DCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILG-MGYKENVDIWSVG  205 (355)
T ss_dssp             HHHHHHHHHHTTCCCSCCCGGGEEECT-TCCEEECCCCC---------------CCTTCCHHHHTT-CCCCTTHHHHHHH
T ss_pred             HHHHHHHhhhcccccccCCcccccccc-ccceeeechhhhhccccccccccccccccccChhhhcC-CCCCCCccccccc
Confidence            999999999999999999999999998 899999999998765543        378999997655 5799999999999


Q ss_pred             HHHHHHHhCCCCChh---hhhhhhhhhccCCChhHHH----HHHHHHhccCCCCCCCCc-------------ccccCCCH
Q 005958          312 FMMAKMVLRELMDPL---IFTKFKSFLTKGIDPSCLR----EFLLQVLNRNSSSGNTGF-------------QILDRNWG  371 (667)
Q Consensus       312 viLyemltG~~PF~~---~~~~~~~~~~~g~~~~~l~----~~~~~~~~~~~~~~~~~~-------------~~~~~~s~  371 (667)
                      |++|||++|++||.+   .....++....+.+.....    ..................             ......++
T Consensus       206 ~~l~ell~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  285 (355)
T d2b1pa1         206 CIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKAS  285 (355)
T ss_dssp             HHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHTTSCHHHHHHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHH
T ss_pred             chHHHHhhCCCCCCCCCHHHHHHHHHHhccCCCHHHHHHhhhhHHHHhhcCccccccccccccccccccccccccccCCH
Confidence            999999999999963   2222222222222221110    111111111111111111             11123467


Q ss_pred             HHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          372 AGWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       372 e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                      +++|||.+||++||++||||+|+|+||||+...
T Consensus       286 ~~~dll~~mL~~dP~~R~ta~elL~Hpw~~~~~  318 (355)
T d2b1pa1         286 QARDLLSKMLVIDPAKRISVDDALQHPYINVWY  318 (355)
T ss_dssp             HHHHHHHHHSCSSTTTSCCHHHHHTSTTTGGGC
T ss_pred             HHHHHHHHHCcCChhHCcCHHHHhcCcccCCCC
Confidence            899999999999999999999999999998743

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8e-46  Score=384.53  Aligned_cols=248  Identities=14%  Similarity=0.174  Sum_probs=192.2

Q ss_pred             ccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcc
Q 005958           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYS  158 (667)
Q Consensus        82 ~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (667)
                      ++..+.|++.+.||+|+||    +||+|.++..+. .....||||+++..   .....+.+|+++|++++      ||||
T Consensus         3 ei~~~~~~~~~~iG~G~fG----~Vy~~~~~~~~~-~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~------H~nI   71 (283)
T d1mqba_           3 EIHPSCVTRQKVIGAGEFG----EVYKGMLKTSSG-KKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFS------HHNI   71 (283)
T ss_dssp             BCCTTTEEEEEEEEECSSS----EEEEEEEEC----CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCC------CTTB
T ss_pred             cCCHHHeEeeeEEeeCCCe----EEEEEEEeCCCC-EEEEEEEEEEECcccChHHHHHHHHHHHHHHhcC------CCCE
Confidence            3455789999999999999    999999886211 12357999999753   23345789999999995      9999


Q ss_pred             eEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHH
Q 005958          159 MQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  238 (667)
Q Consensus       159 v~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~  238 (667)
                      |++++++.     +.+.+++||| |+.+|+|.+++....        ..+++                    ..+..++.
T Consensus        72 v~~~g~~~-----~~~~~~~v~e-~~~~~~l~~~~~~~~--------~~~~~--------------------~~~~~i~~  117 (283)
T d1mqba_          72 IRLEGVIS-----KYKPMMIITE-YMENGALDKFLREKD--------GEFSV--------------------LQLVGMLR  117 (283)
T ss_dssp             CCEEEEEC-----SSSSEEEEEE-CCTTEEHHHHHHHTT--------TCSCH--------------------HHHHHHHH
T ss_pred             eeeeEEEe-----cCCceEEEEE-ecccCcchhhhhccc--------ccccH--------------------HHHHHHHH
Confidence            99999998     7788999999 999999999887643        13444                    45778999


Q ss_pred             HHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC------------CCCCCCcccccCCCCCCchhh
Q 005958          239 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED------------GPNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       239 QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------------~~~Y~APE~l~~~~~ys~ksD  306 (667)
                      ||+.||+|||++||+||||||+|||++. ++.+||+|||+|+.....            .+.|+|||++. ...|+.++|
T Consensus       118 ~i~~gl~~lH~~~iiHrDlKp~NILl~~-~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~Y~APE~l~-~~~~~~~sD  195 (283)
T d1mqba_         118 GIAAGMKYLANMNYVHRDLAARNILVNS-NLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAIS-YRKFTSASD  195 (283)
T ss_dssp             HHHHHHHHHHHTTCCCSCCCGGGEEECT-TCCEEECCCCC-----------------CCCGGGSCHHHHH-SCCCCHHHH
T ss_pred             HHHHhhhhccccccccCccccceEEECC-CCeEEEcccchhhcccCCCccceEeccCCCCccccCHHHHc-cCCCCCccc
Confidence            9999999999999999999999999998 899999999999865332            24699999554 556999999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcC
Q 005958          307 MRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  386 (667)
Q Consensus       307 IWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~  386 (667)
                      ||||||++|||++|..||.           .+....++...+....         ..+....+++++++||.+||+.||+
T Consensus       196 I~S~Gvil~el~t~~~~~~-----------~~~~~~~~~~~i~~~~---------~~~~~~~~~~~l~~li~~cl~~~p~  255 (283)
T d1mqba_         196 VWSFGIVMWEVMTYGERPY-----------WELSNHEVMKAINDGF---------RLPTPMDCPSAIYQLMMQCWQQERA  255 (283)
T ss_dssp             HHHHHHHHHHHHTTSCCTT-----------TTCCHHHHHHHHHTTC---------CCCCCTTCBHHHHHHHHHHTCSSTT
T ss_pred             ccccHHHHHHHHhCCCCcc-----------ccCCHHHHHHHHhccC---------CCCCchhhHHHHHHHHHHHCcCCHh
Confidence            9999999999999655542           2223333333322211         1233456789999999999999999


Q ss_pred             CCCCHHHHHc
Q 005958          387 KRISCLDALR  396 (667)
Q Consensus       387 kRpSa~elL~  396 (667)
                      +|||+.|+++
T Consensus       256 ~RPt~~eil~  265 (283)
T d1mqba_         256 RRPKFADIVS  265 (283)
T ss_dssp             TSCCHHHHHH
T ss_pred             HCcCHHHHHH
Confidence            9999999986

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-46  Score=386.42  Aligned_cols=245  Identities=18%  Similarity=0.194  Sum_probs=195.2

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      +.+.+++|++++.||+|+||    .||+|+++       |..||||+++.....+.+.+|+++|++++      ||||++
T Consensus         2 w~i~~~~~~~~~~lG~G~fg----~Vy~~~~~-------~~~vAvK~i~~~~~~~~~~~E~~~l~~l~------HpnIv~   64 (262)
T d1byga_           2 WALNMKELKLLQTIGKGEFG----DVMLGDYR-------GNKVAVKCIKNDATAQAFLAEASVMTQLR------HSNLVQ   64 (262)
T ss_dssp             CBCCGGGEEEEEEEEECSSC----EEEEEEET-------TEEEEEEECCCCC--HHHHHTHHHHTTCC------CTTBCC
T ss_pred             CccCHHHeEEeEEEecCCCe----EEEEEEEC-------CeEEEEEEECcHHHHHHHHHHHHHHHhCC------CCCEee
Confidence            46778999999999999999    99999975       57899999988777788899999999995      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++..    ..+.+|+||| |+++|+|.+++..++       ...+++                    ..+..|+.||
T Consensus        65 ~~g~~~~----~~~~~~lv~e-y~~~g~L~~~l~~~~-------~~~l~~--------------------~~~~~i~~~i  112 (262)
T d1byga_          65 LLGVIVE----EKGGLYIVTE-YMAKGSLVDYLRSRG-------RSVLGG--------------------DCLLKFSLDV  112 (262)
T ss_dssp             EEEEECC----C--CCEEEEC-CCTTEEHHHHHHHHH-------HHHCCH--------------------HHHHHHHHHH
T ss_pred             EEEEEEe----cCCcEEEEEe-ccCCCCHHHHHHhcC-------CCCCCH--------------------HHHHHHHHHH
Confidence            9999861    3466899999 999999999997642       012443                    5578899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC------CCCCCCcccccCCCCCCchhhHHHHHHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED------GPNNSSPDSNMDRRQMMIAFDMRCVGFMM  314 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~------~~~Y~APE~l~~~~~ys~ksDIWSLGviL  314 (667)
                      +.||.|||+++|+||||||+|||++. ++.+||+|||+++.....      ...|+|||++.+ ..|+.++|||||||++
T Consensus       113 ~~al~ylH~~~ivH~dlkp~Nil~~~-~~~~kl~dfg~s~~~~~~~~~~~~~~~y~aPE~l~~-~~~t~~sDIwSfG~il  190 (262)
T d1byga_         113 CEAMEYLEGNNFVHRDLAARNVLVSE-DNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALRE-KKFSTKSDVWSFGILL  190 (262)
T ss_dssp             HHHHHHHHHTTCCCSCCSGGGEEECT-TSCEEECCCCC------------CCTTTSCHHHHHH-CCCCHHHHHHHHHHHH
T ss_pred             HhhccccccCceeccccchHhheecC-CCCEeecccccceecCCCCccccccccCCChHHHhC-CCCChHHHHHhHHHHH
Confidence            99999999999999999999999998 899999999999865433      268999996654 5699999999999999


Q ss_pred             HHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHHH
Q 005958          315 AKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  393 (667)
Q Consensus       315 yemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~e  393 (667)
                      |||++ |++||.            +.+..++...+.   ..      ...+.+..+++++++||.+||..||++|||+.+
T Consensus       191 ~el~t~~~~p~~------------~~~~~~~~~~i~---~~------~~~~~~~~~~~~~~~li~~cl~~dP~~Rps~~~  249 (262)
T d1byga_         191 WEIYSFGRVPYP------------RIPLKDVVPRVE---KG------YKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQ  249 (262)
T ss_dssp             HHHHTTSCCSCT------------TSCGGGHHHHHT---TT------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHHHHCCCCCCC------------CCCHHHHHHHHH---cC------CCCCCCccCCHHHHHHHHHHcccCHhHCcCHHH
Confidence            99998 788874            223333333321   11      122345678899999999999999999999999


Q ss_pred             HHcC
Q 005958          394 ALRH  397 (667)
Q Consensus       394 lL~H  397 (667)
                      ++++
T Consensus       250 l~~~  253 (262)
T d1byga_         250 LREQ  253 (262)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9874

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-46  Score=390.27  Aligned_cols=245  Identities=14%  Similarity=0.131  Sum_probs=195.9

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCcceE
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIv~  160 (667)
                      ..++|++++.||+|+||    +||+|++..++. ....+||+|.++..   ...+.+.+|+++|++++      |||||+
T Consensus         7 k~~dy~~~~~lG~G~fG----~Vy~~~~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~------HpnIv~   75 (317)
T d1xkka_           7 KETEFKKIKVLGSGAFG----TVYKGLWIPEGE-KVKIPVAIKELREATSPKANKEILDEAYVMASVD------NPHVCR   75 (317)
T ss_dssp             CTTTEEEEEEEEECSSE----EEEEEEECC-----CCEEEEEEEECC----CTHHHHHHHHHHHHHCC------CTTBCC
T ss_pred             CHHHCEEeeEEecCCCe----EEEEEEEcCCCC-EEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCC------CCCEee
Confidence            34689999999999999    999999987211 11236899988652   23467899999999995      999999


Q ss_pred             EEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHH
Q 005958          161 VHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  240 (667)
Q Consensus       161 l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QI  240 (667)
                      +++++.     + +..+++|| ++.+|+|.+++....        ..+++                    ..+..|+.||
T Consensus        76 l~g~~~-----~-~~~~~v~e-~~~~~~l~~~~~~~~--------~~~~~--------------------~~~~~i~~qi  120 (317)
T d1xkka_          76 LLGICL-----T-STVQLITQ-LMPFGCLLDYVREHK--------DNIGS--------------------QYLLNWCVQI  120 (317)
T ss_dssp             EEEEEE-----S-SSEEEEEE-CCTTCBHHHHHHHTS--------SSCCH--------------------HHHHHHHHHH
T ss_pred             EEEEEe-----c-CCeeEEEE-eccCCcccccccccc--------cCCCH--------------------HHHHHHHHHH
Confidence            999998     4 35678888 888889999987653        24554                    4567899999


Q ss_pred             HHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhhHHH
Q 005958          241 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDMRC  309 (667)
Q Consensus       241 l~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksDIWS  309 (667)
                      +.||+|||++||+||||||+|||++. ++++||+|||+|+.....           .+.|+|||++.+ ..|+.++||||
T Consensus       121 ~~gl~yLH~~~iiHrDlKp~NIll~~-~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~-~~~~~~sDvwS  198 (317)
T d1xkka_         121 AKGMNYLEDRRLVHRDLAARNVLVKT-PQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILH-RIYTHQSDVWS  198 (317)
T ss_dssp             HHHHHHHHHTTCCCSCCCGGGEEEEE-TTEEEECCCSHHHHTTTTCC--------CCTTTSCHHHHHH-CCCCHHHHHHH
T ss_pred             HHHHHHHHHcCcccCcchhhcceeCC-CCCeEeeccccceecccccccccccccccCccccChHHHhc-CCCChhhhhhh
Confidence            99999999999999999999999998 899999999999865432           268999996654 46999999999


Q ss_pred             HHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCC
Q 005958          310 VGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  388 (667)
Q Consensus       310 LGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kR  388 (667)
                      |||++|||+| |.+||.            +.+..++...+....         ..+.++.+++++.+||.+||+.||++|
T Consensus       199 ~Gvil~el~t~g~~p~~------------~~~~~~~~~~i~~~~---------~~~~p~~~~~~~~~li~~cl~~dP~~R  257 (317)
T d1xkka_         199 YGVTVWELMTFGSKPYD------------GIPASEISSILEKGE---------RLPQPPICTIDVYMIMVKCWMIDADSR  257 (317)
T ss_dssp             HHHHHHHHHTTSCCTTT------------TSCGGGHHHHHHHTC---------CCCCCTTBCHHHHHHHHHHTCSSGGGS
T ss_pred             HHHHHHHHHHCCCCCCC------------CCCHHHHHHHHHcCC---------CCCCCcccCHHHHHHHHHhCCCChhhC
Confidence            9999999998 788885            333444444443221         123345678999999999999999999


Q ss_pred             CCHHHHHcC
Q 005958          389 ISCLDALRH  397 (667)
Q Consensus       389 pSa~elL~H  397 (667)
                      ||+.|+++|
T Consensus       258 Ps~~eil~~  266 (317)
T d1xkka_         258 PKFRELIIE  266 (317)
T ss_dssp             CCHHHHHHH
T ss_pred             cCHHHHHHH
Confidence            999999987

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.5e-46  Score=388.42  Aligned_cols=272  Identities=14%  Similarity=0.139  Sum_probs=205.1

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch---hhHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      .++..++|++++.||+|+||    +||+|+++......+++.||||+++..   ...+++.+|+++|++++      |||
T Consensus         8 ~e~p~~~~~~~~~lG~G~fG----~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~------h~n   77 (301)
T d1lufa_           8 LEYPRNNIEYVRDIGEGAFG----RVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFD------NPN   77 (301)
T ss_dssp             TBCCGGGCEEEEEEEECSSC----EEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCC------CTT
T ss_pred             ccCCHHHcEEeEEEeeCCCe----EEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcC------CCC
Confidence            34556789999999999999    999999875444457789999999753   23456799999999995      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      |+++++++.     ..+..++||| |+++|+|.+++...........  .....   .............++...+..|+
T Consensus        78 iv~~~~~~~-----~~~~~~~v~e-~~~~g~L~~~l~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~l~~~~~~~i~  146 (301)
T d1lufa_          78 IVKLLGVCA-----VGKPMCLLFE-YMAYGDLNEFLRSMSPHTVCSL--SHSDL---STRARVSSPGPPPLSCAEQLCIA  146 (301)
T ss_dssp             BCCEEEEEC-----SSSSCEEEEE-CCTTCBHHHHHHHTCC---------------------------CCCCHHHHHHHH
T ss_pred             cccceeeec-----cCCceEEEEE-ecCCCcHHHHHHhcCccccccc--ccccc---chhhhccccCCCCCCHHHHHHHH
Confidence            999999998     7789999999 9999999999987542111000  00000   00000112223346678899999


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchhh
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ksD  306 (667)
                      .||+.||+|||++|||||||||+|||++. ++.+||+|||+|+.....           .+.|+|||.+. ...|+.++|
T Consensus       147 ~qi~~gl~ylH~~~ivHrDlKp~NILld~-~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~t~ksD  224 (301)
T d1lufa_         147 RQVAAGMAYLSERKFVHRDLATRNCLVGE-NMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIF-YNRYTTESD  224 (301)
T ss_dssp             HHHHHHHHHHHHTTCCCSCCSGGGEEECG-GGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHH-HCCCCHHHH
T ss_pred             HHHHHHhhhcccCCeEeeEEcccceEECC-CCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHc-cCCCChhhh
Confidence            99999999999999999999999999998 899999999999754322           25799999554 556999999


Q ss_pred             HHHHHHHHHHHHhCC-CCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCc
Q 005958          307 MRCVGFMMAKMVLRE-LMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       307 IWSLGviLyemltG~-~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      ||||||++|||++|. +||.            +.+..++...+.   ...      ..+.+..+++++.+||.+||+.||
T Consensus       225 VwS~Gvvl~ell~~~~~p~~------------~~~~~e~~~~v~---~~~------~~~~p~~~~~~~~~li~~cl~~~P  283 (301)
T d1lufa_         225 VWAYGVVLWEIFSYGLQPYY------------GMAHEEVIYYVR---DGN------ILACPENCPLELYNLMRLCWSKLP  283 (301)
T ss_dssp             HHHHHHHHHHHHTTTCCTTT------------TSCHHHHHHHHH---TTC------CCCCCTTCCHHHHHHHHHHTCSSG
T ss_pred             hccchhhHHHHHccCCCCCC------------CCCHHHHHHHHH---cCC------CCCCCccchHHHHHHHHHHcCCCh
Confidence            999999999999985 6774            333333333322   111      123345788999999999999999


Q ss_pred             CCCCCHHHHHc
Q 005958          386 SKRISCLDALR  396 (667)
Q Consensus       386 ~kRpSa~elL~  396 (667)
                      ++|||+.|+++
T Consensus       284 ~~RPt~~ev~~  294 (301)
T d1lufa_         284 ADRPSFCSIHR  294 (301)
T ss_dssp             GGSCCHHHHHH
T ss_pred             hHCcCHHHHHH
Confidence            99999999965

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-45  Score=384.28  Aligned_cols=270  Identities=15%  Similarity=0.117  Sum_probs=207.4

Q ss_pred             cccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCC
Q 005958           79 HVIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        79 ~~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      ..+++..++|+++++||+|+||    .||+|++.......+++.||||+++...   ....+.+|+.+++++.     +|
T Consensus        16 ~~~~~~~~~~~l~~~iG~G~fg----~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~-----~H   86 (311)
T d1t46a_          16 HKWEFPRNRLSFGKTLGAGAFG----KVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLG-----NH   86 (311)
T ss_dssp             GGGBCCGGGEEEEEEEEECSSE----EEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHC-----CC
T ss_pred             ccccCCHHHeEEeeEEeecCCe----EEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhcc-----CC
Confidence            3455667999999999999999    9999998654444578999999997532   3345789999999996     69


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      ||||++++++.     +.+.+||||| ||++|+|.+++............           ...........+++..+..
T Consensus        87 pnIv~~~g~~~-----~~~~~~lvmE-~~~~g~l~~~l~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~  149 (311)
T d1t46a_          87 MNIVNLLGACT-----IGGPTLVITE-YCCYGDLLNFLRRKRDSFICSKT-----------SPAIMEDDELALDLEDLLS  149 (311)
T ss_dssp             TTBCCEEEEEC-----SSSSCEEEEE-CCTTEEHHHHHHHTTTTC-------------------------CCCCHHHHHH
T ss_pred             CCEEEEEEEEe-----eCCEEEEEEE-cCCCCCHHHHHHhcccccccccc-----------ccccccccccCCCHHHHHH
Confidence            99999999998     7788999999 99999999999875421110000           0000111223455678899


Q ss_pred             HHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-----------CCCCCcccccCCCCCCch
Q 005958          236 LMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-----------PNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       236 i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-----------~~Y~APE~l~~~~~ys~k  304 (667)
                      |+.||+.||+|||++||+||||||+|||++. ++.+||+|||.++......           +.|+|||++. ...|+.+
T Consensus       150 ~~~qi~~gl~~LH~~~ivHrDLKp~NIl~~~-~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~  227 (311)
T d1t46a_         150 FSYQVAKGMAFLASKNCIHRDLAARNILLTH-GRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIF-NCVYTFE  227 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEEET-TTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHH-HCCCCHH
T ss_pred             HHHHHHHHHHHHHhCCeeecccccccccccc-cCcccccccchheeccCCCcceEeeecccChHHcCHHHhc-CCCCCCc
Confidence            9999999999999999999999999999998 8999999999998765432           5799999654 5569999


Q ss_pred             hhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhc
Q 005958          305 FDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLAT  383 (667)
Q Consensus       305 sDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~  383 (667)
                      +|||||||++|||++ |.+||..           ......+.+.+.....         .......++++.+||.+||++
T Consensus       228 ~DIwS~G~~l~ellt~g~p~~~~-----------~~~~~~~~~~i~~~~~---------~~~~~~~~~~l~~Li~~cl~~  287 (311)
T d1t46a_         228 SDVWSYGIFLWELFSLGSSPYPG-----------MPVDSKFYKMIKEGFR---------MLSPEHAPAEMYDIMKTCWDA  287 (311)
T ss_dssp             HHHHHHHHHHHHHHTTTCCSSTT-----------CCSSHHHHHHHHHTCC---------CCCCTTSCHHHHHHHHHHTCS
T ss_pred             ccccchHHHHHHHHhCCCCCCCC-----------CCHHHHHHHHHhcCCC---------CCCcccccHHHHHHHHHHcCC
Confidence            999999999999998 6666632           1122333343332221         122345789999999999999


Q ss_pred             CcCCCCCHHHHHc
Q 005958          384 KPSKRISCLDALR  396 (667)
Q Consensus       384 DP~kRpSa~elL~  396 (667)
                      ||++|||++|+++
T Consensus       288 dP~~RPs~~~il~  300 (311)
T d1t46a_         288 DPLKRPTFKQIVQ  300 (311)
T ss_dssp             SGGGSCCHHHHHH
T ss_pred             ChhHCcCHHHHHH
Confidence            9999999999986

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-45  Score=383.14  Aligned_cols=265  Identities=17%  Similarity=0.149  Sum_probs=199.9

Q ss_pred             cccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCC--CCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCC
Q 005958           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNS--PLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYH  155 (667)
Q Consensus        81 ~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~--~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~H  155 (667)
                      +.+..++|++++.||+|+||    .||+|++.....  ..++..||||+++...   ...++.+|+..+.++.     +|
T Consensus         8 ~~i~~~~~~l~~~iG~G~fg----~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~-----~H   78 (299)
T d1fgka_           8 WELPRDRLVLGKPLGEGAFG----QVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIG-----KH   78 (299)
T ss_dssp             TBCCGGGEEEEEECC---------CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC-----CC
T ss_pred             CcccHHHeEEeeEEeecCCc----EEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhc-----CC
Confidence            55667999999999999999    999999876321  1234689999997633   3356688999999995     59


Q ss_pred             CcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHH
Q 005958          156 SYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRL  235 (667)
Q Consensus       156 pnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~  235 (667)
                      ||||++++++.     +.+.+++||| ||++|+|.++|..+........             ..........++...+..
T Consensus        79 pnIv~~~~~~~-----~~~~~~~v~e-~~~~g~l~~~i~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~  139 (299)
T d1fgka_          79 KNIINLLGACT-----QDGPLYVIVE-YASKGNLREYLQARRPPGLEYS-------------YNPSHNPEEQLSSKDLVS  139 (299)
T ss_dssp             TTBCCEEEEEC-----SSSSCEEEEC-CCTTCBHHHHHHTTSCC-------------------------CCCCCHHHHHH
T ss_pred             CeEEecccccc-----cCCeEEEEEE-ccCCCcHHHHHHhhcCCccccc-------------cccccCccccCCHHHHHH
Confidence            99999999998     7788999999 9999999999987642111000             000112223455677899


Q ss_pred             HHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC-----------CCCCCcccccCCCCCCch
Q 005958          236 LMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG-----------PNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       236 i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~-----------~~Y~APE~l~~~~~ys~k  304 (667)
                      ++.||+.||+|||++|||||||||+|||++. ++.+||+|||+++......           +.|+|||.+. ...|+.+
T Consensus       140 ~~~qi~~al~ylH~~~ivHrDiKp~NiLl~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~-~~~y~~k  217 (299)
T d1fgka_         140 CAYQVARGMEYLASKKCIHRDLAARNVLVTE-DNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALF-DRIYTHQ  217 (299)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEECT-TCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHH-HCCCCHH
T ss_pred             HHHHHHHHHHHhhhCCEEeeeecccceeecC-CCCeEeccchhhccccccccccccccCCCChhhhhhhHhc-CCCCCch
Confidence            9999999999999999999999999999998 8999999999998664332           5799999654 4579999


Q ss_pred             hhHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhc
Q 005958          305 FDMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLAT  383 (667)
Q Consensus       305 sDIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~  383 (667)
                      +|||||||++|||++ |.+||.            +.+...+.+.+..   ..      ..+.+..+++++++||.+||++
T Consensus       218 ~DiwS~Gvvl~ell~~g~~p~~------------~~~~~~~~~~i~~---~~------~~~~p~~~~~~l~~li~~cl~~  276 (299)
T d1fgka_         218 SDVWSFGVLLWEIFTLGGSPYP------------GVPVEELFKLLKE---GH------RMDKPSNCTNELYMMMRDCWHA  276 (299)
T ss_dssp             HHHHHHHHHHHHHHTTSCCSST------------TCCHHHHHHHHHT---TC------CCCCCSSCCHHHHHHHHHHTCS
T ss_pred             hhhHHhHHHHHHhccCCCCCCC------------CCCHHHHHHHHHc---CC------CCCCCccchHHHHHHHHHHccC
Confidence            999999999999998 788885            3333333333321   11      1234457889999999999999


Q ss_pred             CcCCCCCHHHHHc
Q 005958          384 KPSKRISCLDALR  396 (667)
Q Consensus       384 DP~kRpSa~elL~  396 (667)
                      ||++|||+.|+++
T Consensus       277 dP~~Rps~~eil~  289 (299)
T d1fgka_         277 VPSQRPTFKQLVE  289 (299)
T ss_dssp             SGGGSCCHHHHHH
T ss_pred             CHhHCcCHHHHHH
Confidence            9999999999986

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-45  Score=387.29  Aligned_cols=262  Identities=18%  Similarity=0.154  Sum_probs=202.2

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCc--EEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNT--KVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMY  154 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~--~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~  154 (667)
                      .+.+..++|++.++||+|+||    +||+|+++.     ++.  .||||.++...   ..+.+.+|+++|+++.     +
T Consensus         4 ~~~i~~~~~~~~~~iG~G~fg----~Vy~~~~~~-----~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~-----~   69 (309)
T d1fvra_           4 YPVLDWNDIKFQDVIGEGNFG----QVLKARIKK-----DGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLG-----H   69 (309)
T ss_dssp             SSBCCGGGCEEEEEEECGGGC----EEEEEEEEE-----TTEEEEEEEEEEECC------CHHHHHHHHHTTCC-----C
T ss_pred             CCccCHHHcEEEEEEeeCCCc----EEEEEEECC-----CCeEEEEEEEEECcccChHHHHHHHHHHHHHHhcc-----C
Confidence            345677999999999999999    999999987     555  57788876422   3345789999999985     5


Q ss_pred             CCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHH
Q 005958          155 HSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  234 (667)
Q Consensus       155 HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~  234 (667)
                      |||||++++++.     +++.+||||| |+++|+|.++|........       .....      ........+++..+.
T Consensus        70 HpnIv~~~~~~~-----~~~~~~iV~e-y~~~g~L~~~l~~~~~~~~-------~~~~~------~~~~~~~~l~~~~~~  130 (309)
T d1fvra_          70 HPNIINLLGACE-----HRGYLYLAIE-YAPHGNLLDFLRKSRVLET-------DPAFA------IANSTASTLSSQQLL  130 (309)
T ss_dssp             CTTBCCEEEEEE-----ETTEEEEEEC-CCTTCBHHHHHHTTCHHHH-------CHHHH------HHTTBSCSSCHHHHH
T ss_pred             CCCEeeEEEEEe-----cCCeeEEEEE-ecCCCcHHHHHhhcccccc-------chhhh------ccccccCCCCHHHHH
Confidence            999999999999     7789999999 9999999999986531100       00000      001112234557789


Q ss_pred             HHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccC--------CCCCCCCcccccCCCCCCchhh
Q 005958          235 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYE--------DGPNNSSPDSNMDRRQMMIAFD  306 (667)
Q Consensus       235 ~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~--------~~~~Y~APE~l~~~~~ys~ksD  306 (667)
                      .++.||+.||.|||++||+||||||+|||++. ++.+||+|||+|+....        +...|+|||.+. ...|+.++|
T Consensus       131 ~~~~qia~gl~~lH~~~iiHrDlkp~NIL~~~-~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~-~~~~~~~sD  208 (309)
T d1fvra_         131 HFAADVARGMDYLSQKQFIHRDLAARNILVGE-NYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLN-YSVYTTNSD  208 (309)
T ss_dssp             HHHHHHHHHHHHHHHTTEECSCCSGGGEEECG-GGCEEECCTTCEESSCEECCC----CCTTTCCHHHHH-HCEECHHHH
T ss_pred             HHHHHHHHHHHhhhcCCccccccccceEEEcC-CCceEEccccccccccccccccceecCCcccchHHhc-cCCCCccce
Confidence            99999999999999999999999999999998 89999999999975432        236899999654 456999999


Q ss_pred             HHHHHHHHHHHHhCC-CCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCc
Q 005958          307 MRCVGFMMAKMVLRE-LMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKP  385 (667)
Q Consensus       307 IWSLGviLyemltG~-~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP  385 (667)
                      ||||||++|||++|. +||.            +.+...+...   +....      ..+.+..+++++++||.+||+.||
T Consensus       209 vwSfGvil~ell~~~~~p~~------------~~~~~~~~~~---i~~~~------~~~~~~~~~~~~~~li~~cl~~dP  267 (309)
T d1fvra_         209 VWSYGVLLWEIVSLGGTPYC------------GMTCAELYEK---LPQGY------RLEKPLNCDDEVYDLMRQCWREKP  267 (309)
T ss_dssp             HHHHHHHHHHHHTTSCCTTT------------TCCHHHHHHH---GGGTC------CCCCCTTBCHHHHHHHHHHTCSSG
T ss_pred             eehhHHHHHHHHhcCCCCCC------------CCCHHHHHHH---HHhcC------CCCCCccCCHHHHHHHHHHcCCCh
Confidence            999999999999975 5663            3333333222   22211      123445688999999999999999


Q ss_pred             CCCCCHHHHHcC
Q 005958          386 SKRISCLDALRH  397 (667)
Q Consensus       386 ~kRpSa~elL~H  397 (667)
                      ++|||++|+++|
T Consensus       268 ~~RPs~~eil~~  279 (309)
T d1fvra_         268 YERPSFAQILVS  279 (309)
T ss_dssp             GGSCCHHHHHHH
T ss_pred             hHCcCHHHHHHH
Confidence            999999999986

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-45  Score=377.12  Aligned_cols=245  Identities=17%  Similarity=0.163  Sum_probs=188.7

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcch-----hhHHHHHHHHHHHHHHhhccCCCCCc
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-----QAQRRGRRAIEVLKKLVRRRLMYHSY  157 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~-----~~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (667)
                      +..++|++.+.||+|+||    +||+|++....  .....||||++++.     ...+.+.+|+.+|++++      |||
T Consensus         5 i~~~d~~~~~~iG~G~fg----~Vy~~~~~~~~--~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~------H~n   72 (273)
T d1u46a_           5 IGEKDLRLLEKLGDGSFG----VVRRGEWDAPS--GKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLD------HRN   72 (273)
T ss_dssp             CCGGGEEEEEECC----C----CCEEEEEECTT--SCEEEEEEEC--------CHHHHHHHHHHHHHHHCC------CTT
T ss_pred             EchHHeEEEEEEecCCCe----EEEEEEEECCC--CcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCC------CCC
Confidence            345789999999999999    99999976521  13357999998752     22356789999999995      999


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  237 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~  237 (667)
                      ||++++++.     + ..+++||| ||++|+|.+++..+.        ..+++                    ..+..++
T Consensus        73 Iv~~~g~~~-----~-~~~~lv~e-~~~~~~l~~~~~~~~--------~~l~~--------------------~~~~~~~  117 (273)
T d1u46a_          73 LIRLYGVVL-----T-PPMKMVTE-LAPLGSLLDRLRKHQ--------GHFLL--------------------GTLSRYA  117 (273)
T ss_dssp             BCCEEEEEC-----S-SSCEEEEE-CCTTCBHHHHHHHHG--------GGSCH--------------------HHHHHHH
T ss_pred             EEEEEEEEe-----e-cchheeee-eecCcchhhhhhccc--------CCCCH--------------------HHHHHHH
Confidence            999999997     3 35789999 999999999887642        13554                    4577899


Q ss_pred             HHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCC------------CCCCCcccccCCCCCCchh
Q 005958          238 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDG------------PNNSSPDSNMDRRQMMIAF  305 (667)
Q Consensus       238 ~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~------------~~Y~APE~l~~~~~ys~ks  305 (667)
                      .||+.||.|||++||+||||||+|||++. ++.+||+|||+++......            ..|+|||++. ...|+.++
T Consensus       118 ~qi~~gl~ylH~~~iiHrDikp~NIll~~-~~~vkl~DfGl~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~-~~~~~~~~  195 (273)
T d1u46a_         118 VQVAEGMGYLESKRFIHRDLAARNLLLAT-RDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLK-TRTFSHAS  195 (273)
T ss_dssp             HHHHHHHHHHHHTTEECSCCCGGGEEEEE-TTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHH-HCEEEHHH
T ss_pred             HHHHHHHHHhhhCCEeeeeecHHHhcccc-ccceeeccchhhhhcccCCCcceecCccccCcccCCHHHHh-CCCCCcch
Confidence            99999999999999999999999999999 8999999999998764432            4689999655 45699999


Q ss_pred             hHHHHHHHHHHHHh-CCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          306 DMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       306 DIWSLGviLyemlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      |||||||++|||++ |++||.            +.+.....   ..+....     ...+....+++++++||.+||+.|
T Consensus       196 Di~S~Gvil~emlt~G~~Pf~------------~~~~~~~~---~~i~~~~-----~~~~~~~~~~~~l~~li~~cl~~d  255 (273)
T d1u46a_         196 DTWMFGVTLWEMFTYGQEPWI------------GLNGSQIL---HKIDKEG-----ERLPRPEDCPQDIYNVMVQCWAHK  255 (273)
T ss_dssp             HHHHHHHHHHHHHTTSCCTTT------------TCCHHHHH---HHHHTSC-----CCCCCCTTCCHHHHHHHHHHTCSS
T ss_pred             hhhhhHHHHHHHHhCCCCCCC------------CcCHHHHH---HHHHhCC-----CCCCCcccccHHHHHHHHHHcCCC
Confidence            99999999999998 899985            22222222   2222211     122345678899999999999999


Q ss_pred             cCCCCCHHHHHc
Q 005958          385 PSKRISCLDALR  396 (667)
Q Consensus       385 P~kRpSa~elL~  396 (667)
                      |++|||++|+++
T Consensus       256 p~~RPt~~ei~~  267 (273)
T d1u46a_         256 PEDRPTFVALRD  267 (273)
T ss_dssp             GGGSCCHHHHHH
T ss_pred             hhHCcCHHHHHH
Confidence            999999999864

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-44  Score=379.91  Aligned_cols=265  Identities=17%  Similarity=0.200  Sum_probs=206.1

Q ss_pred             ccccccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---hHHHHHHHHHHHHHHhhccCCCCC
Q 005958           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHS  156 (667)
Q Consensus        80 ~~~~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~Hp  156 (667)
                      .+++..++|+++++||+|+||    +||+|.++......+++.||||+++...   ....+.+|+++++++      +||
T Consensus        14 ~~ei~~~~~~l~~~lG~G~fG----~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l------~h~   83 (308)
T d1p4oa_          14 EWEVAREKITMSRELGQGSFG----MVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEF------NCH   83 (308)
T ss_dssp             TTBCCGGGEEEEEEEEECSSS----EEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGC------CCT
T ss_pred             ceeecHHHeEEeeEEeeCCCe----EEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHc------CCC
Confidence            356777999999999999999    9999998743333356899999997532   223468999999999      599


Q ss_pred             cceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          157 YSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       157 nIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      |||++++++.     ..+..++||| |+++|+|.+++........  .                 ......++...+..+
T Consensus        84 nIv~~~~~~~-----~~~~~~lv~e-~~~~g~l~~~~~~~~~~~~--~-----------------~~~~~~~~~~~~~~i  138 (308)
T d1p4oa_          84 HVVRLLGVVS-----QGQPTLVIME-LMTRGDLKSYLRSLRPAMA--N-----------------NPVLAPPSLSKMIQM  138 (308)
T ss_dssp             TBCCEEEEEC-----SSSSCEEEEE-CCTTCBHHHHHHHHHHHHH--H-----------------CTTCCCCCHHHHHHH
T ss_pred             CEeeeeeEEe-----cCCceeEEEe-ecCCCCHHHHHHhcccccc--c-----------------ccccCCCCHHHHHHH
Confidence            9999999998     7788999999 9999999999976421000  0                 001112234567889


Q ss_pred             HHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-----------CCCCCCcccccCCCCCCchh
Q 005958          237 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAF  305 (667)
Q Consensus       237 ~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-----------~~~Y~APE~l~~~~~ys~ks  305 (667)
                      +.|++.||.|||+++|+||||||+|||++. ++++||+|||+|+.....           .+.|+|||.+. ...|+.++
T Consensus       139 ~~~ia~gl~~LH~~~ivHrDlk~~NiLld~-~~~~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~-~~~~~~~~  216 (308)
T d1p4oa_         139 AGEIADGMAYLNANKFVHRDLAARNCMVAE-DFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLK-DGVFTTYS  216 (308)
T ss_dssp             HHHHHHHHHHHHHTTCBCSCCSGGGEEECT-TCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHH-HCCCCHHH
T ss_pred             HHHHHHHHHHHhhCCeeeceEcCCceeecC-CceEEEeecccceeccCCcceeeccceecccccCCHHHHc-cCCCCccc
Confidence            999999999999999999999999999998 899999999999855432           27799999654 55689999


Q ss_pred             hHHHHHHHHHHHHhC-CCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          306 DMRCVGFMMAKMVLR-ELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       306 DIWSLGviLyemltG-~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      |||||||++|||++| .+||.            +.+..+....+.   ...      ..+.++.+++++.+||.+||+.|
T Consensus       217 Dv~S~G~il~El~t~~~~p~~------------~~~~~~~~~~i~---~~~------~~~~p~~~~~~l~~li~~cl~~~  275 (308)
T d1p4oa_         217 DVWSFGVVLWEIATLAEQPYQ------------GLSNEQVLRFVM---EGG------LLDKPDNCPDMLFELMRMCWQYN  275 (308)
T ss_dssp             HHHHHHHHHHHHHHTSCCTTT------------TSCHHHHHHHHH---TTC------CCCCCTTCCHHHHHHHHHHTCSS
T ss_pred             ccccHHHHHHHHHhCCCCCCC------------CCCHHHHHHHHH---hCC------CCCCcccchHHHHHHHHHHcCCC
Confidence            999999999999998 47764            333333333322   111      12344578899999999999999


Q ss_pred             cCCCCCHHHHHc------CCCCCC
Q 005958          385 PSKRISCLDALR------HPFLCG  402 (667)
Q Consensus       385 P~kRpSa~elL~------HPwf~~  402 (667)
                      |++|||+.|+++      +|+|++
T Consensus       276 P~~RPs~~~il~~L~~~~~~~~~~  299 (308)
T d1p4oa_         276 PKMRPSFLEIISSIKEEMEPGFRE  299 (308)
T ss_dssp             GGGSCCHHHHHHHHGGGSCTTHHH
T ss_pred             hhHCcCHHHHHHHHHHhcCCCCcC
Confidence            999999999997      566543

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.7e-43  Score=364.52  Aligned_cols=251  Identities=10%  Similarity=0.083  Sum_probs=191.7

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYV  165 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~  165 (667)
                      ++|++++.||+|+||    +||+|++..     +++.||||++........+.+|+++++.++     .|++|+.+.+++
T Consensus         7 ~rY~l~~~iG~G~fG----~Vy~a~~~~-----~~~~vAvK~~~~~~~~~~~~~E~~i~~~l~-----~~~~i~~~~~~~   72 (299)
T d1ckia_           7 NRYRLGRKIGSGSFG----DIYLGTDIA-----AGEEVAIKLECVKTKHPQLHIESKIYKMMQ-----GGVGIPTIRWCG   72 (299)
T ss_dssp             TTEEEEEEEEECSSS----EEEEEEETT-----TTEEEEEEEEESCTTSCCHHHHHHHHHHST-----TSTTCCCEEEEE
T ss_pred             CEEEEeEEEeeCCCc----EEEEEEECC-----CCCEEEEEEEchhccCHHHHHHHHHHHHcc-----CCCcccEEEEEE
Confidence            579999999999999    999999987     799999999887655567889999999996     355566666666


Q ss_pred             EecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHH
Q 005958          166 SSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVN  245 (667)
Q Consensus       166 ~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~  245 (667)
                      .     +.+..++||| |+++ +|.+.+....        ..+++                    ..+..++.|++.||+
T Consensus        73 ~-----~~~~~~ivme-~~~~-~l~~~~~~~~--------~~~~~--------------------~~~~~~~~qi~~~l~  117 (299)
T d1ckia_          73 A-----EGDYNVMVME-LLGP-SLEDLFNFCS--------RKFSL--------------------KTVLLLADQMISRIE  117 (299)
T ss_dssp             E-----ETTEEEEEEE-CCCC-BHHHHHHHTT--------TCCCH--------------------HHHHHHHHHHHHHHH
T ss_pred             e-----cCCEEEEEEE-EcCC-chhhhhhhcc--------CCCcH--------------------HHHHHHHHHHHHHHH
Confidence            6     6788999999 9977 8877776533        14554                    457889999999999


Q ss_pred             HHHHCCCcccCCCCCcEEEcC--CCCeEEEeeecccccccC----------------CCCCCCCcccccCCCCCCchhhH
Q 005958          246 YLHSHGLAHTELRLENVHISP--VDRHIKVGILGNAADFYE----------------DGPNNSSPDSNMDRRQMMIAFDM  307 (667)
Q Consensus       246 yLHs~gIvHrDLKPeNILl~~--~~~~vKL~DFGlA~~~~~----------------~~~~Y~APE~l~~~~~ys~ksDI  307 (667)
                      |||++||+||||||+|||++.  .+..+||+|||+|+.+..                +.+.|+|||++. +..|+.++||
T Consensus       118 ~lH~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~Di  196 (299)
T d1ckia_         118 YIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHL-GIEQSRRDDL  196 (299)
T ss_dssp             HHHHTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTCCBCCCCBCCSCCCCSSSCCHHHHT-TBCCCHHHHH
T ss_pred             HHHHCCeeeccCCHhhccccccCCCceeeeeccCcceeccccccccceeccccCCcCCCccccCHHHHh-CCCCCChhhE
Confidence            999999999999999999864  245799999999986542                237899999654 5569999999


Q ss_pred             HHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCC
Q 005958          308 RCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  387 (667)
Q Consensus       308 WSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~k  387 (667)
                      |||||++|||++|++||.......        ................      .....+.+++++.+||.+||+.||++
T Consensus       197 wSlG~~l~el~tg~~P~~~~~~~~--------~~~~~~~~~~~~~~~~------~~~~~~~~p~~~~~li~~cl~~~p~~  262 (299)
T d1ckia_         197 ESLGYVLMYFNLGSLPWQGLKAAT--------KRQKYERISEKKMSTP------IEVLCKGYPSEFATYLNFCRSLRFDD  262 (299)
T ss_dssp             HHHHHHHHHHHHSSCTTCCCC---------------HHHHHHHHHHSC------HHHHTTTSCHHHHHHHHHHHHSCTTC
T ss_pred             EecCHHHHHHHhCCCcccccchHH--------HHHHHHHhhcccCCCC------hhHhccCCCHHHHHHHHHHccCChhH
Confidence            999999999999999996321100        0001111111111110      01123467889999999999999999


Q ss_pred             CCCHHH---HHcCCCC
Q 005958          388 RISCLD---ALRHPFL  400 (667)
Q Consensus       388 RpSa~e---lL~HPwf  400 (667)
                      ||++++   +|+|+|.
T Consensus       263 RP~~~~i~~~l~~~~~  278 (299)
T d1ckia_         263 KPDYSYLRQLFRNLFH  278 (299)
T ss_dssp             CCCHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHH
Confidence            999875   4666654

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-43  Score=368.00  Aligned_cols=242  Identities=14%  Similarity=0.159  Sum_probs=187.5

Q ss_pred             EEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcc---hhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEE
Q 005958           89 KILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS---VQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYV  165 (667)
Q Consensus        89 ~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~---~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~  165 (667)
                      .+.++||+|+||    +||+|++....  .+...||||+++.   ....+++.+|+++|++++      |||||++++++
T Consensus        30 ~~~~~iG~G~fg----~Vyk~~~~~~~--~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~------HpnIv~~~g~~   97 (311)
T d1r0pa_          30 HFNEVIGRGHFG----CVYHGTLLDND--GKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFS------HPNVLSLLGIC   97 (311)
T ss_dssp             EEEEEEEEETTE----EEEEEEECC------CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCC------CTTBCCCCEEE
T ss_pred             ccceEEeecCCe----EEEEEEEECCC--CEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCC------CCCEeEEeEEE
Confidence            346889999999    99999987621  1234699999874   223356799999999995      99999999997


Q ss_pred             EecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHHH
Q 005958          166 SSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVN  245 (667)
Q Consensus       166 ~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~  245 (667)
                      ..    .++.+++||| ||++|+|.+++.....        .++                    ...+..++.|++.||.
T Consensus        98 ~~----~~~~~~lv~E-~~~~g~l~~~~~~~~~--------~~~--------------------~~~~~~i~~qia~gL~  144 (311)
T d1r0pa_          98 LR----SEGSPLVVLP-YMKHGDLRNFIRNETH--------NPT--------------------VKDLIGFGLQVAKGMK  144 (311)
T ss_dssp             EE----TTTEEEEEEE-CCTTCBHHHHHHCTTC--------CCB--------------------HHHHHHHHHHHHHHHH
T ss_pred             Ee----cCCceEEEEE-EeecCchhhhhccccc--------cch--------------------HHHHHHHHHHHHHhhh
Confidence            62    4568999999 9999999999886431        222                    2456789999999999


Q ss_pred             HHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-------------CCCCCCcccccCCCCCCchhhHHHHHH
Q 005958          246 YLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-------------GPNNSSPDSNMDRRQMMIAFDMRCVGF  312 (667)
Q Consensus       246 yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-------------~~~Y~APE~l~~~~~ys~ksDIWSLGv  312 (667)
                      |||+.||+||||||+|||++. ++.+||+|||+++.....             .+.|+|||.+. ...|+.++|||||||
T Consensus       145 ~lH~~~iiHrDLK~~NILl~~-~~~~kL~DFG~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~ksDI~SfGi  222 (311)
T d1r0pa_         145 FLASKKFVHRDLAARNCMLDE-KFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQ-TQKFTTKSDVWSFGV  222 (311)
T ss_dssp             HHHHTTCCCSCCSGGGEEECT-TCCEEECSSGGGCCTTTTTCCCTTCTTCSSCCGGGSCHHHHH-HCCCCHHHHHHHHHH
T ss_pred             hhcccCcccCCccHHhEeECC-CCCEEEecccchhhccccccccceecccccccccccChHHHh-cCCCCChhHhhhhHH
Confidence            999999999999999999998 899999999999865432             25699999554 456999999999999


Q ss_pred             HHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcCcCCCCCHH
Q 005958          313 MMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCL  392 (667)
Q Consensus       313 iLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~  392 (667)
                      ++|||++|..||...           .....+...+   ....      ....++.+++++.+||.+||+.||++|||+.
T Consensus       223 vl~El~t~~~p~~~~-----------~~~~~~~~~i---~~g~------~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~  282 (311)
T d1r0pa_         223 LLWELMTRGAPPYPD-----------VNTFDITVYL---LQGR------RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFS  282 (311)
T ss_dssp             HHHHHHTTSCCSCC-----------------CHHHH---HTTC------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             HHHHHHHCCCCCCCC-----------CCHHHHHHHH---HcCC------CCCCcccCcHHHHHHHHHHcCCCHhHCcCHH
Confidence            999999977776421           1111111221   1111      1123456789999999999999999999999


Q ss_pred             HHHcC
Q 005958          393 DALRH  397 (667)
Q Consensus       393 elL~H  397 (667)
                      |+++|
T Consensus       283 ei~~~  287 (311)
T d1r0pa_         283 ELVSR  287 (311)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99987

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-43  Score=374.99  Aligned_cols=280  Identities=18%  Similarity=0.206  Sum_probs=200.9

Q ss_pred             ccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccC-----CCCCc
Q 005958           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRL-----MYHSY  157 (667)
Q Consensus        84 ~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~-----~~Hpn  157 (667)
                      .-++|+++++||+|+||    +||+|+++.     +|+.||||++++.. ..+...+|+.+++.+.+...     +.|+|
T Consensus        11 ~~~rY~i~~~LG~G~fg----~Vy~~~~~~-----~g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~   81 (362)
T d1q8ya_          11 KDARYILVRKLGWGHFS----TVWLAKDMV-----NNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANH   81 (362)
T ss_dssp             TTTTEEEEEEEEECSSE----EEEEEEETT-----TTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTT
T ss_pred             cCCcEEEEEEEeeCCCe----EEEEEEECC-----CCCEEEEEEEeccccchHHHHHHHHHHHHhcchhhhhhhhcCcCc
Confidence            33579999999999999    999999998     89999999998643 33566899999999864332     24799


Q ss_pred             ceEEEEEEEecccCCCCeEEEEEccCCCCC-CHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHH
Q 005958          158 SMQVHGYVSSHTTSGRSLFTLVHGQYHGSF-SLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  236 (667)
Q Consensus       158 Iv~l~~~~~~~~~~~~~~~~lVmE~~~~~G-sL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i  236 (667)
                      |+++++++...   .....+++|+ ++..+ +.........       ...+++                    ..++.+
T Consensus        82 iv~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~--------------------~~i~~i  130 (362)
T d1q8ya_          82 ILKLLDHFNHK---GPNGVHVVMV-FEVLGENLLALIKKYE-------HRGIPL--------------------IYVKQI  130 (362)
T ss_dssp             BCCCCEEEEEE---ETTEEEEEEE-ECCCCEEHHHHHHHTT-------TSCCCH--------------------HHHHHH
T ss_pred             eEEEEEEeeec---cccceeeeee-eccccccccccccccc-------ccCCcH--------------------HHHHHH
Confidence            99999998744   4456666776 44433 4444333321       113343                    568899


Q ss_pred             HHHHHHHHHHHHH-CCCcccCCCCCcEEEcCCC-----CeEEEeeecccccccCCC------CCCCCcccccCCCCCCch
Q 005958          237 MRDLLIGVNYLHS-HGLAHTELRLENVHISPVD-----RHIKVGILGNAADFYEDG------PNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       237 ~~QIl~aL~yLHs-~gIvHrDLKPeNILl~~~~-----~~vKL~DFGlA~~~~~~~------~~Y~APE~l~~~~~ys~k  304 (667)
                      +.||+.||+|||+ +||+||||||+|||++..+     ..++|+|||.|.......      +.|+|||++.. ..|+.+
T Consensus       131 ~~qil~al~~lh~~~~IvHrDlKp~NIll~~~~~~~~~~~~kl~dfg~s~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~  209 (362)
T d1q8ya_         131 SKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLG-APWGCG  209 (362)
T ss_dssp             HHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHT-CCCCTH
T ss_pred             HHHHHHHHHHHhhhcCcccccCChhHeeeeccCcccccceeeEeecccccccccccccccccccccChhhccc-cCCCcc
Confidence            9999999999998 8999999999999998622     159999999998655432      67999996664 568999


Q ss_pred             hhHHHHHHHHHHHHhCCCCChhh---------hhhhhhhhccCCChhHHHHHHH---HHhccC------CCCCC------
Q 005958          305 FDMRCVGFMMAKMVLRELMDPLI---------FTKFKSFLTKGIDPSCLREFLL---QVLNRN------SSSGN------  360 (667)
Q Consensus       305 sDIWSLGviLyemltG~~PF~~~---------~~~~~~~~~~g~~~~~l~~~~~---~~~~~~------~~~~~------  360 (667)
                      +||||+||++++|++|++||...         ......+...|..+........   ......      .....      
T Consensus       210 ~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (362)
T d1q8ya_         210 ADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDV  289 (362)
T ss_dssp             HHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHH
T ss_pred             ccccchHHHHHHHHHCCCCCCCCccccccchhHHHHHHHHHhCCCCHHHhhcccccccccccchhhhccccccCCchhhh
Confidence            99999999999999999999631         2233334445555443322110   000000      00000      


Q ss_pred             --CCcccccCCCHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005958          361 --TGFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPR  404 (667)
Q Consensus       361 --~~~~~~~~~s~e~~dLI~~~L~~DP~kRpSa~elL~HPwf~~~~  404 (667)
                        .........+++++|||.+||++||.+||||+|+|+||||++..
T Consensus       290 ~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L~Hp~f~~~~  335 (362)
T d1q8ya_         290 LTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTL  335 (362)
T ss_dssp             HHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTCGGGTTCT
T ss_pred             cccccccCcccCHHHHHHHHHHCCCChhHCcCHHHHhcCcccCCCC
Confidence              01112234567899999999999999999999999999999754

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-43  Score=368.01  Aligned_cols=258  Identities=14%  Similarity=0.137  Sum_probs=184.8

Q ss_pred             CCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHH--HHHhhccCCCCCcceEEEE
Q 005958           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVL--KKLVRRRLMYHSYSMQVHG  163 (667)
Q Consensus        86 ~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL--~~L~~~~~~~HpnIv~l~~  163 (667)
                      .+|.+.+.||+|+||    +||+|++.       |+.||||+++.... +...+|.+++  ..+      +|||||++++
T Consensus         3 ~~~~l~~~iG~G~fg----~Vy~~~~~-------g~~vAvK~~~~~~~-~~~~~e~ei~~~~~~------~HpnIv~~~~   64 (303)
T d1vjya_           3 RTIVLQESIGKGRFG----EVWRGKWR-------GEEVAVKIFSSREE-RSWFREAEIYQTVML------RHENILGFIA   64 (303)
T ss_dssp             GGEEEEEEEECCSSS----EEEEEEET-------TEEEEEEEECGGGH-HHHHHHHHHHTSTTC------CCTTBCCEEE
T ss_pred             cEEEEEEEEeeCCCe----EEEEEEEC-------CEEEEEEEECccch-hHHHHHHHHHHHhhC------CCCcCcceEE
Confidence            568999999999999    99999853       68999999976543 3344455444  445      5999999999


Q ss_pred             EEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHH
Q 005958          164 YVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  243 (667)
Q Consensus       164 ~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~a  243 (667)
                      ++.... .....+|+||| ||++|+|.++|++.          .+++                    ..+..++.|++.|
T Consensus        65 ~~~~~~-~~~~~~~lv~E-y~~~g~L~~~l~~~----------~l~~--------------------~~~~~~~~~ia~g  112 (303)
T d1vjya_          65 ADNKDN-GTWTQLWLVSD-YHEHGSLFDYLNRY----------TVTV--------------------EGMIKLALSTASG  112 (303)
T ss_dssp             EEEEEC-SSSEEEEEEEE-CCTTCBHHHHHHHC----------CBCH--------------------HHHHHHHHHHHHH
T ss_pred             EEEeCC-CcceEEEEEEe-cccCCCHHHHHhcC----------CCCH--------------------HHHHHHHHHHHHH
Confidence            997441 12347899999 99999999999874          2443                    4567899999999


Q ss_pred             HHHHHH--------CCCcccCCCCCcEEEcCCCCeEEEeeecccccccCC-------------CCCCCCcccccCCC---
Q 005958          244 VNYLHS--------HGLAHTELRLENVHISPVDRHIKVGILGNAADFYED-------------GPNNSSPDSNMDRR---  299 (667)
Q Consensus       244 L~yLHs--------~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~-------------~~~Y~APE~l~~~~---  299 (667)
                      |.|||+        +||+||||||+|||++. ++.+||+|||+++.....             ++.|+|||++.+..   
T Consensus       113 l~~lH~~~~~~~~~~~IvHrDlKp~NILl~~-~~~~Kl~DFGl~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  191 (303)
T d1vjya_         113 LAHLHMEIVGTQGKPAIAHRDLKSKNILVKK-NGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMK  191 (303)
T ss_dssp             HHHHHCCBCSTTCBCEEECSCCCGGGEEECT-TSCEEECCCTTCEEEETTTTEECC----CCSCGGGCCHHHHTTCSCTT
T ss_pred             HHHHHHhhhhhccCCCeeccccCccceEEcC-CCCeEEEecCccccccCCCcceeccccceecccCcCChhhcccccccc
Confidence            999996        59999999999999998 899999999999865332             37899999665432   


Q ss_pred             --CCCchhhHHHHHHHHHHHHhCCCCChhhhh---hhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHH
Q 005958          300 --QMMIAFDMRCVGFMMAKMVLRELMDPLIFT---KFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGW  374 (667)
Q Consensus       300 --~ys~ksDIWSLGviLyemltG~~PF~~~~~---~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~  374 (667)
                        .++.++|||||||++|||++|.+||.....   .+.................   ....................++.
T Consensus       192 ~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~p~~~~~~~~~~~~~~l~  268 (303)
T d1vjya_         192 HFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVV---CEQKLRPNIPNRWQSCEALRVMA  268 (303)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHH---TTSCCCCCCCGGGGGCHHHHHHH
T ss_pred             CCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccchHHHHHHHH---hccccCCCCCcccCChHHHHHHH
Confidence              257799999999999999999988753111   1111111111122222221   11111000000001112234689


Q ss_pred             HHHHHhhhcCcCCCCCHHHHHcC
Q 005958          375 NLLSLLLATKPSKRISCLDALRH  397 (667)
Q Consensus       375 dLI~~~L~~DP~kRpSa~elL~H  397 (667)
                      +|+.+||+.||++|||+.|++++
T Consensus       269 ~li~~cl~~dp~~Rps~~ei~~~  291 (303)
T d1vjya_         269 KIMRECWYANGAARLTALRIKKT  291 (303)
T ss_dssp             HHHHTTCCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHcccCHhHCcCHHHHHHH
Confidence            99999999999999999999863

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=1.4e-41  Score=354.02  Aligned_cols=248  Identities=13%  Similarity=0.057  Sum_probs=195.0

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGY  164 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~  164 (667)
                      -++|++++.||+|+||    +||+|++..     +++.||||++........+.+|+++++.|+     .|+||+.++++
T Consensus         4 g~~Y~i~~~iG~G~fG----~Vy~a~~~~-----~~~~vAvK~~~~~~~~~~~~~e~~~~~~l~-----~~~~i~~~~~~   69 (293)
T d1csna_           4 GVHYKVGRRIGEGSFG----VIFEGTNLL-----NNQQVAIKFEPRRSDAPQLRDEYRTYKLLA-----GCTGIPNVYYF   69 (293)
T ss_dssp             TTTEEEEEEEEECSSC----EEEEEEETT-----TTEEEEEEEEECCTTSCCHHHHHHHHHHTT-----TCTTCCCEEEE
T ss_pred             CCceEEEEEEecCCCe----EEEEEEECC-----CCCEEEEEEEccccCcHHHHHHHHHHHHhc-----CCCCCCEEEEE
Confidence            4789999999999999    999999998     899999999877655566789999999997     57999999999


Q ss_pred             EEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCccccHHHHHHHHHHHHHHH
Q 005958          165 VSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGV  244 (667)
Q Consensus       165 ~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~~~~~~i~~i~~QIl~aL  244 (667)
                      +.     .....++||| |+++ +|.+++...+        ..+++                    ..+..++.|++.||
T Consensus        70 ~~-----~~~~~~~vme-~~~~-~l~~~~~~~~--------~~~~~--------------------~~~~~i~~q~~~~l  114 (293)
T d1csna_          70 GQ-----EGLHNVLVID-LLGP-SLEDLLDLCG--------RKFSV--------------------KTVAMAAKQMLARV  114 (293)
T ss_dssp             EE-----ETTEEEEEEE-CCCC-BHHHHHHHTT--------TCCCH--------------------HHHHHHHHHHHHHH
T ss_pred             ee-----cCCccEEEEE-ecCC-CHHHHHHhhc--------cchhh--------------------HHHHHHHHHHHHHH
Confidence            98     7789999999 9865 9999998754        13443                    45678999999999


Q ss_pred             HHHHHCCCcccCCCCCcEEEcC----CCCeEEEeeecccccccC----------------CCCCCCCcccccCCCCCCch
Q 005958          245 NYLHSHGLAHTELRLENVHISP----VDRHIKVGILGNAADFYE----------------DGPNNSSPDSNMDRRQMMIA  304 (667)
Q Consensus       245 ~yLHs~gIvHrDLKPeNILl~~----~~~~vKL~DFGlA~~~~~----------------~~~~Y~APE~l~~~~~ys~k  304 (667)
                      +|||++||+||||||+|||++.    .++.+||+|||+|+.+..                +++.|||||++. ...|+.+
T Consensus       115 ~~lH~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~-~~~~~~~  193 (293)
T d1csna_         115 QSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHL-GREQSRR  193 (293)
T ss_dssp             HHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHT-TCCCCHH
T ss_pred             HHHHHCCceeccCCccceeecCcccccCCceEEcccceeEEcccCccccceeecccCceEEchhhcCHHHhc-CCCCChH
Confidence            9999999999999999999974    257899999999986532                237899999655 4569999


Q ss_pred             hhHHHHHHHHHHHHhCCCCChhhhhhhhhhhccCCChhHHHHHHHHHhccCCCCCCCCcccccCCCHHHHHHHHHhhhcC
Q 005958          305 FDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  384 (667)
Q Consensus       305 sDIWSLGviLyemltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~dLI~~~L~~D  384 (667)
                      +|||||||++|||++|++||......        ................ +     ......++++++.+|+..|+..+
T Consensus       194 ~DiwSlG~~l~elltg~~Pf~~~~~~--------~~~~~~~~i~~~~~~~-~-----~~~l~~~~p~~l~~ii~~~~~~~  259 (293)
T d1csna_         194 DDLEALGHVFMYFLRGSLPWQGLKAA--------TNKQKYERIGEKKQST-P-----LRELCAGFPEEFYKYMHYARNLA  259 (293)
T ss_dssp             HHHHHHHHHHHHHHHSSCTTSSCCSC--------CHHHHHHHHHHHHHHS-C-----HHHHTTTSCHHHHHHHHHHHHCC
T ss_pred             HHHHHhhHHHHHHHhCCCcCCCccch--------hHHHHHHHHHhccCCC-C-----hHHhcCCCCHHHHHHHHHHhcCC
Confidence            99999999999999999999622110        0001111111111100 0     01123457789999999999999


Q ss_pred             cCCCCCHHHHHc
Q 005958          385 PSKRISCLDALR  396 (667)
Q Consensus       385 P~kRpSa~elL~  396 (667)
                      |++||+.+.+.+
T Consensus       260 ~~~rP~y~~l~~  271 (293)
T d1csna_         260 FDATPDYDYLQG  271 (293)
T ss_dssp             TTCCCCHHHHHH
T ss_pred             cccCcCHHHHHH
Confidence            999999876643

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.88  E-value=2e-23  Score=202.29  Aligned_cols=163  Identities=17%  Similarity=0.086  Sum_probs=119.0

Q ss_pred             eEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--------------------hHHHHHHHHHHHHHH
Q 005958           88 FKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--------------------AQRRGRRAIEVLKKL  147 (667)
Q Consensus        88 y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--------------------~~~~~~rEi~iL~~L  147 (667)
                      +.++++||+|+||    +||+|++.      +|+.||||+++...                    ......+|...+.++
T Consensus         2 ~~vg~~IG~G~~g----~Vy~a~~~------~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l   71 (191)
T d1zara2           2 DAIGKLMGEGKES----AVFNCYSE------KFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKL   71 (191)
T ss_dssp             SEEEEEEEECSSE----EEEEEEET------TTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHT
T ss_pred             chhCCEeeeCcce----EEEEEECC------CCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            5689999999999    99999986      58999999876311                    012235688888888


Q ss_pred             hhccCCCCCcceEEEEEEEecccCCCCeEEEEEccCCCCCCHHHHHHhcCCCcccccccCCCHHHHhhcCCCCCCCCCcc
Q 005958          148 VRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGQYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAAS  227 (667)
Q Consensus       148 ~~~~~~~HpnIv~l~~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~i~~~~~~~~l~~~~~l~E~~a~~~~~~~~~~~~~~  227 (667)
                      .      |++++..+++..         .+++|| |++++.+.+                +++                 
T Consensus        72 ~------~~~v~~~~~~~~---------~~lvme-~~~~~~~~~----------------l~~-----------------  102 (191)
T d1zara2          72 Q------GLAVPKVYAWEG---------NAVLME-LIDAKELYR----------------VRV-----------------  102 (191)
T ss_dssp             T------TSSSCCEEEEET---------TEEEEE-CCCCEEGGG----------------CCC-----------------
T ss_pred             c------CCCcceEEEecC---------CEEEEE-eeccccccc----------------hhh-----------------
Confidence            4      999998886542         279999 999844322                221                 


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEEcCCCCeEEEeeecccccccCCCC-CCCCcc--cc--cCCCCCC
Q 005958          228 RQLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGP-NNSSPD--SN--MDRRQMM  302 (667)
Q Consensus       228 ~~~~~i~~i~~QIl~aL~yLHs~gIvHrDLKPeNILl~~~~~~vKL~DFGlA~~~~~~~~-~Y~APE--~l--~~~~~ys  302 (667)
                         ..+..++.||+.||.|||++||+||||||+|||+++  +.++|+|||.|.....+.. .|....  .+  ...+.|+
T Consensus       103 ---~~~~~i~~ql~~~l~~lH~~giiHrDiKP~NILv~~--~~~~liDFG~a~~~~~~~~~~~l~rd~~~~~~~f~r~y~  177 (191)
T d1zara2         103 ---ENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVSE--EGIWIIDFPQSVEVGEEGWREILERDVRNIITYFSRTYR  177 (191)
T ss_dssp             ---SCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEET--TEEEECCCTTCEETTSTTHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ---HHHHHHHHHHHHHHHHHhhCCEEEccCChhheeeeC--CCEEEEECCCcccCCCCCcHHHHHHHHHHHHHHHcCCCC
Confidence               124669999999999999999999999999999995  5699999999987754431 111110  00  1134588


Q ss_pred             chhhHHHHHHHH
Q 005958          303 IAFDMRCVGFMM  314 (667)
Q Consensus       303 ~ksDIWSLGviL  314 (667)
                      .++|+||+.--+
T Consensus       178 ~~~d~~s~~~~~  189 (191)
T d1zara2         178 TEKDINSAIDRI  189 (191)
T ss_dssp             CCCCHHHHHHHH
T ss_pred             CcccHHHHHHHH
Confidence            899999986433

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.19  E-value=5e-06  Score=81.38  Aligned_cols=86  Identities=9%  Similarity=-0.007  Sum_probs=60.8

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh--hHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~--~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      +..|++.+..+-++.+    .||+...       .++.+++|+.....  ....+.+|..++..++     .+--+.+++
T Consensus        13 ~~~~~~~~~~~G~s~~----~v~rv~~-------~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~-----~~vpvP~vl   76 (263)
T d1j7la_          13 IEKYRCVKDTEGMSPA----KVYKLVG-------ENENLYLKMTDSRYKGTTYDVEREKDMMLWLE-----GKLPVPKVL   76 (263)
T ss_dssp             HTTSEEEECSCCCSSS----EEEEEEC-------SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHT-----TTSCCCCEE
T ss_pred             hhceEEEEcCCCCCCC----cEEEEEe-------CCCeEEEEEcCCCcccchhhHHHHHHHHHHHh-----ccCCCCcEE
Confidence            4678877765545555    8998753       36778899876532  2234688999999996     344456777


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCHHHH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSLRHW  192 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL~~~  192 (667)
                      .+..     +.+..++||+ +.+|.++.+.
T Consensus        77 ~~~~-----~~~~~~lv~~-~l~G~~~~~~  100 (263)
T d1j7la_          77 HFER-----HDGWSNLLMS-EADGVLCSEE  100 (263)
T ss_dssp             EEEE-----ETTEEEEEEE-CCSSEEHHHH
T ss_pred             EEEe-----cCCceEEEEE-eccccccccc
Confidence            7776     5678899999 9998777554

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=97.59  E-value=0.00012  Score=76.49  Aligned_cols=78  Identities=13%  Similarity=0.113  Sum_probs=50.0

Q ss_pred             EeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchh---------hHHHHHHHHHHHHHHhhccCCCCCcceEE
Q 005958           91 LDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---------AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (667)
Q Consensus        91 ~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~---------~~~~~~rEi~iL~~L~~~~~~~HpnIv~l  161 (667)
                      .+.||.|...    .||++.+..     .++.|+||.-...-         ..++..+|.++|+.+...   ....+.++
T Consensus        31 ~~eig~G~~N----~vfrV~~~~-----~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~---~p~~vP~v   98 (392)
T d2pula1          31 CQEIGDGNLN----YVFHIYDQE-----HDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEH---VPHLVPRV   98 (392)
T ss_dssp             EEECCSSSSE----EEEEEEC---------CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTT---CGGGSCCE
T ss_pred             EEEeCCCceE----eEEEEEeCC-----CCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhh---CCCCcceE
Confidence            5678999999    999998775     57889999764310         123456799999988521   12345666


Q ss_pred             EEEEEecccCCCCeEEEEEccCCCCCC
Q 005958          162 HGYVSSHTTSGRSLFTLVHGQYHGSFS  188 (667)
Q Consensus       162 ~~~~~~~~~~~~~~~~lVmE~~~~~Gs  188 (667)
                      +.+.       ....++||| ++++..
T Consensus        99 ~~~d-------~~~~~lvmE-~L~~~~  117 (392)
T d2pula1          99 FYSD-------TEMAVTVME-DLSHLK  117 (392)
T ss_dssp             EEEE-------TTTTEEEEC-CCTTSE
T ss_pred             EEEc-------CCCCEEEEe-ccCCcc
Confidence            6543       234578999 887644

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.58  E-value=0.00015  Score=70.15  Aligned_cols=77  Identities=18%  Similarity=0.080  Sum_probs=52.8

Q ss_pred             EeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEEEEEEecccCC
Q 005958           93 RVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSG  172 (667)
Q Consensus        93 ~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~~~~~~~~~~~  172 (667)
                      .+..|..+   ..||+....      .+..+++|.-... ....+.+|...|+.|...    .-.+.+++.+..     +
T Consensus        17 ~~~~G~s~---~~v~r~~~~------~~~~~vlK~~~~~-~~~~l~~E~~~l~~L~~~----gvpvP~v~~~~~-----~   77 (255)
T d1nd4a_          17 QQTIGCSD---AAVFRLSAQ------GRPVLFVKTDLSG-ALNELQDEAARLSWLATT----GVPCAAVLDVVT-----E   77 (255)
T ss_dssp             ECSCTTSS---CEEEEEECT------TSCCEEEEEECSC-TTSCHHHHHHHHHHHHTT----TCCBCCEEEEEE-----C
T ss_pred             EcCCcccC---CeEEEEEeC------CCCEEEEEeCCcc-CHhHHHHHHHHHHHHHhc----CCCCCceeeecc-----c
Confidence            45555543   178988765      4677899986654 334578899999998631    122566777766     6


Q ss_pred             CCeEEEEEccCCCCCCH
Q 005958          173 RSLFTLVHGQYHGSFSL  189 (667)
Q Consensus       173 ~~~~~lVmE~~~~~GsL  189 (667)
                      .+..++||+ +++|.++
T Consensus        78 ~~~~~~v~~-~i~G~~~   93 (255)
T d1nd4a_          78 AGRDWLLLG-EVPGQDL   93 (255)
T ss_dssp             SSCEEEEEE-CCSSEET
T ss_pred             ccceEEEEE-eeecccc
Confidence            678899999 9987554

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.61  E-value=0.0052  Score=63.44  Aligned_cols=85  Identities=20%  Similarity=0.286  Sum_probs=55.7

Q ss_pred             cCCeEEEeEeccCCCCCCCceEEEEEEcCCCCC--CCCcEEEEEEEcchhhHHHHHHHHHHHHHHhhccCCCCCcceEEE
Q 005958           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSP--LHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (667)
Q Consensus        85 ~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~--~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~  162 (667)
                      .+++++ +.|+.|-.-    .+|++........  ...+.|.+++.-.....-...+|..+++.+.     .+.-..+++
T Consensus        42 ~~~l~v-~~l~GGltN----~~y~v~~~~~~~~~~~~~~~vllRi~g~~~~~idr~~E~~i~~~ls-----~~gl~Pkll  111 (395)
T d1nw1a_          42 LEHLRI-SRIKGGMSN----MLFLCRLSEVYPPIRNEPNKVLLRVYFNPETESHLVAESVIFTLLS-----ERHLGPKLY  111 (395)
T ss_dssp             GGGEEE-EEECCCTTE----EEEEEEECTTSCCSSSCCSEEEEEEECSCCCHHHHHHHHHHHHHHH-----HTTSSSCEE
T ss_pred             ccceEE-EEcCCcccc----ceEEEEeCCCCccccCCCCcEEEEecCCcchhhHHHHHHHHHHHHH-----hCCCCCeEE
Confidence            345555 577777777    9999987642111  1346788887653323334578999999997     354455788


Q ss_pred             EEEEecccCCCCeEEEEEccCCCCCCH
Q 005958          163 GYVSSHTTSGRSLFTLVHGQYHGSFSL  189 (667)
Q Consensus       163 ~~~~~~~~~~~~~~~lVmE~~~~~GsL  189 (667)
                      +++.     +    .+||| |++|..|
T Consensus       112 ~~~~-----~----g~I~e-fi~g~~l  128 (395)
T d1nw1a_         112 GIFS-----G----GRLEE-YIPSRPL  128 (395)
T ss_dssp             EEET-----T----EEEEC-CCCEEEC
T ss_pred             EEcC-----C----ceEEE-EeccccC
Confidence            8764     2    58899 8887433

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=96.35  E-value=0.0048  Score=61.97  Aligned_cols=69  Identities=9%  Similarity=0.092  Sum_probs=45.3

Q ss_pred             eEEEEEEcCCCCCCCCcEEEEEEEcchh-hHHHHHHHHHHHHHHhhccCCCCCcceEEE--EEEEecccCCCCeEEEEEc
Q 005958          105 VVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH--GYVSSHTTSGRSLFTLVHG  181 (667)
Q Consensus       105 ~Vy~a~~~~~~~~~tg~~vAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnIv~l~--~~~~~~~~~~~~~~~lVmE  181 (667)
                      .||+++..      +|..|++|+.+... ..+++..|...+..|.... +..+..+..-  ..+.     ..+..+.+++
T Consensus        37 ~vy~v~~~------dg~~~VlK~~rp~~~s~~~i~~E~~~l~~L~~~g-ipv~~p~~~~g~~~~~-----~~~~~~~l~~  104 (325)
T d1zyla1          37 RVYQFQDE------DRRRFVVKFYRPERWTADQILEEHQFALQLVNDE-VPVAAPVAFNGQTLLN-----HQGFYFAVFP  104 (325)
T ss_dssp             EEEEECCT------TCCCEEEEEECTTTSCHHHHHHHHHHHHHHHHTT-CSBCCCCCBTTBSCEE-----ETTEEEEEEE
T ss_pred             eeEEEEcC------CCCEEEEEEeCCCCCCHHHHHHHHHHHHHHHhcC-CCCCCceecCCCeeee-----eeeEEEEEEe
Confidence            89999886      48899999987643 3466788999999997431 1112111110  1111     4567888999


Q ss_pred             cCCCC
Q 005958          182 QYHGS  186 (667)
Q Consensus       182 ~~~~~  186 (667)
                       +++|
T Consensus       105 -~~~G  108 (325)
T d1zyla1         105 -SVGG  108 (325)
T ss_dssp             -CCCC
T ss_pred             -ecCC
Confidence             8876

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.72  E-value=0.012  Score=58.25  Aligned_cols=56  Identities=9%  Similarity=0.167  Sum_probs=36.1

Q ss_pred             cccCCeEEEeEeccCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEEcchhhHHHHHHHHHHHHHHhh
Q 005958           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVR  149 (667)
Q Consensus        83 ~~~~~y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~tg~~vAvK~i~~~~~~~~~~rEi~iL~~L~~  149 (667)
                      +.++...-.+.|..|---    +.|+.....       ..|++|+.......+++..|++++..|..
T Consensus        15 Y~lg~~~~~~~i~~G~~N----~ny~v~t~~-------g~yVLri~~~~~~~~~l~~~~~~l~~L~~   70 (316)
T d2ppqa1          15 YDVGSLTSYKGIAEGVEN----SNFLLHTTK-------DPLILTLYEKRVEKNDLPFFLGLMQHLAA   70 (316)
T ss_dssp             BCCCCEEEEEEECC---E----EEEEEEESS-------CCEEEEEECC---CCHHHHHHHHHHHHHH
T ss_pred             CCCCCceEeecCCCCccc----CeEEEEECC-------CcEEEEEcCCCCCHHHHHHHHHHHHhhhh
Confidence            344555556667777666    889887553       45999998765455667889999999964