Citrus Sinensis ID: 006019

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660----
Protein Sequence
MDQNWKFTRLGVLFVVLISQSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAPTSSPPPSSDAIPPASVGSSDDTKANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSHQKSGGSSSKHIAILGGVIGGAILLVATVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIEILSTEAI
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEccccEEEEEccccccEEEccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEcccccccHHHHHHHHcccccEEccccccEEEEEEcccccEEEEEEEEccccccccHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccEEEEcccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccccccccccccccEEcccccEEEEEEccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHcccHHcccccccccHHHcccccHHHHHcccccccccHHHcccccccEEEccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHccHHHcccccccccccccccccccHHHHHHHHcccccEEccccccEEEEEEcccccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEcccHccEEcccccccEEcHHHHHHHHHHcccccccHHHHHcccccccccHHHHHHEHHHHHccccccccccccHHHHHHHHHHcccccHHHcccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHcHccc
Coil and Loop (DISEMBL)
mdqnwkftrLGVLFVVLISQSLCLCWSLNDEGLALLRLRErvvrdpygaltswrscdtennpcswfgvecsdgkvvnlnlkdlclegtlapeiqslTHIKSIIlrnnsfsgiipegfgeleelevldfghnnfsgplpndlginhSLTIllldnndfvgslspEIYKLQvlsesqvdegqlssaAKKEQSCYERsikwngvldedTVQRRLLqinpfrnlkgrilgiaptsspppssdaippasvgssddtkanetssdrndsvsppklsnpapapapnqtptptpsipiprpsssqshqksggssskHIAILGGVIGGAILLVATVGIYLCRcnkvstvkpwatglsgQLQKAFVTGVPKLKRSELEAACEDFsnvigsspigtvykgtlsNGVEIAVASVSVAsakdwpknLEVQFRKKIDTLSKVNHKNFVNLigfceeeepftrmmvfeyapngtlfehihikesehldWGMRLRIAMGMAYCLEHmhqlnppiahnylnssaVHLTEDYAAKLSDLSFWNEIAMAEMAATSkklssapsaslesnvYNFGVLLFEMVTgrlpylvdngsleDWAADYlsgvqplqqfvdptlssfdEEQLETLGELIKSCvradpekrptMRDIAAILREItgitpdgaipklsplWWAEIEILSTEAI
Flexible Loop (DISEMBL)
mdqnwkftrLGVLFVVLISQSLCLCWSLNDEGLALLRLRERVVRDPYGaltswrscdtennpCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQlssaakkeqscyersikwngvldedtvQRRLLQINPFRNLKGRILGIAptsspppssdAIPPASVGSSDDTKANetssdrndsvsppkLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSHQKSGGSSSKHIAILGGVIGGAILLVATVGIYLCRCNKVSTVKpwatglsgqlQKAFVTGVPKLKRSELEAACEDFsnvigsspiGTVYKGTLSNGVEIAVASVSvasakdwpknLEVQFRKKidtlskvnhkNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKscvradpekrptMRDIAAILReitgitpdgaipklsplWWAEIEILSTEAI
Low Complexity Region (SEG)
MDQNWKFTRLGVLFVVLISQSLCLCWSLNDEGlallrlrervvrDPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPegfgeleelevldfgHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIaptsspppssdaippasVGSSDDTKANETSSDRNDSVsppklsnpapapapnqtptptpsipiprpsssqshqksggssskhiailggviggaillvaTVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIavasvsvasaKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMaatskklssapsaslesNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIEILSTEAI
Disordered region (IsUnstruct)
****WKFTRLGVLFVVLISQSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVL*******************CYERSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGI*********************************************************************************HIAILGGVIGGAILLVATVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE*****************SNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRA******TMRDIAAILREITGITPDGAIPKLSPLWWAEIEIL*****
Disordered Region (DISOPRED)
****WKF*RLGVLFVVLISQSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYE*****************************************************************************NPAPAPAP********************************AILGGVIGGAILLVATVGIYLCRC***********************GVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVA***********QFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR****************LWWAEIEILST***
Disordered Region (DISEMBL)
MDQNWKFTRLGVLFVVLISQSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS*******************YERSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAP*******************************************************TPSI*******************KHIAILGGVIGGAILLVATVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM*************SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIEILSTEAI
Disordered Region (DISPRO)
***NWKFTRLGVLFVVLISQSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAPTSSPPPSSDAIPPASVGSSDDTKANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSS********GSSSKHIAILGGVIGGAILLVATVGIYLCRCNKVSTVKP*ATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVA********LEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP*GAIPKLSPLWWAEIEILS*E**
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDQNWKFTRLGVLFVVLISQSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAPTSSPPPSSDAIPPASVGSSDDTKANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSHQKSGGSSSKHIAILGGVIGGAILLVATVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIEILSTEAI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	664	2.2.26 [Sep-21-2011]
C0LGQ4	678	Probable LRR receptor-lik	yes	no	0.936	0.917	0.415	1e-145
C0LGU7	695	Probable LRR receptor-lik	no	no	0.926	0.884	0.415	1e-140
Q9SIZ4	489	Inactive receptor-like se	no	no	0.656	0.891	0.501	1e-127
Q9LYN6	499	Probable inactive recepto	no	no	0.612	0.815	0.552	1e-121
C0LGH8	664	Probable LRR receptor-lik	no	no	0.902	0.902	0.307	1e-87
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.817	0.492	0.281	6e-41
O49545	1003	Leucine-rich repeat recep	no	no	0.792	0.524	0.263	7e-40
Q1PEM5	513	Proline-rich receptor-lik	no	no	0.506	0.654	0.314	2e-37
Q8RY65	635	Protein NSP-INTERACTING K	no	no	0.780	0.815	0.258	7e-37
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.814	0.491	0.260	2e-36

>sp|C0LGQ4|MRH1_ARATH Probable LRR receptor-like serine/threonine-protein kinase MRH1 OS=Arabidopsis thaliana GN=MRH1 PE=2 SV=1

 Score =  516 bits (1330), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 289/696 (41%), Positives = 404/696 (58%), Gaps = 74/696 (10%)

Query: 13  LFVVLISQSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSD 72
            F ++I     L  SL  +G ALL+ R RV  DP+G L +W      N+ C W GV C D
Sbjct: 11  FFFLIIGLQAPLSLSLTSQGSALLKFRARVNSDPHGTLANWNVSGI-NDLCYWSGVTCVD 69

Query: 73  GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 132
           GKV  L+L    LEGTLAPE+  L+ ++S+IL  N FSG IP+ +G  E LEVLD   N+
Sbjct: 70  GKVQILDLSGYSLEGTLAPELSQLSDLRSLILSRNHFSGGIPKEYGSFENLEVLDLREND 129

Query: 133 FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEG-QLSSAA------ 185
            SG +P +L    SL  LLL  N F   +  +I +LQ   E ++ +  +LS  A      
Sbjct: 130 LSGQIPPELSNGLSLKHLLLSGNKFSDDMRIKIVRLQSSYEVRLKKSPKLSPLAVLGCIN 189

Query: 186 KKEQSCYERS--------------IK---------WNGVLDEDTVQRRLLQINPFRNLKG 222
           +K   C  R+              IK         +   L+E  + +R   +    NL  
Sbjct: 190 RKLGHCVSRNRIIQVKKVEAIVFRIKATSRRFLKAFPSFLEETDIYKRRELLEETSNLAA 249

Query: 223 RIL--------GIAPTSSPPPSSDAIPPASVGSSDDTKANETSSDRNDSVSPPKLSNPAP 274
                      GI  T + P SS + P  +                +   + P +S   P
Sbjct: 250 EPAPSAPSPSPGII-TEASPRSSGSFPAVTNAKKRRPPLVPPVPSPDKGSTSPDISKNQP 308

Query: 275 APAPNQTPTPTPSIPIPRPSSSQSHQKSGGSSSKHIAILGGVIGGAILLVATVGIYLCRC 334
                                 Q +++S GS    + ++  V     LL+    I+ CR 
Sbjct: 309 ----------------------QDNKQSKGSKHVWLYVVIAVASFVGLLIIVAVIFFCRK 346

Query: 335 NKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNG 394
             V ++ PW TGLSGQLQKAFVTGVPKL RSELE ACEDFSN+I +    TVYKGTLS+G
Sbjct: 347 RAVKSIGPWKTGLSGQLQKAFVTGVPKLNRSELETACEDFSNIIETFDGYTVYKGTLSSG 406

Query: 395 VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY 454
           VEIAVAS ++A +K+W + +E+ +R+KIDTLS++NHKNFVNLIG+CEE++PF RMMVFEY
Sbjct: 407 VEIAVASTAIAESKEWTRAMEMAYRRKIDTLSRINHKNFVNLIGYCEEDDPFNRMMVFEY 466

Query: 455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY 514
           APNGTLFEH+H KE+EHLDW  R+RI MG AYCL+HMH +NPP+AH   NSS ++LT+DY
Sbjct: 467 APNGTLFEHLHDKETEHLDWSARMRIIMGTAYCLQHMHGMNPPMAHTDFNSSEIYLTDDY 526

Query: 515 AAKLSDLSFWNEIAM-------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLP 567
           AAK+S++ F  E  +        ++  TS  L   P    E+NV++FGVL+ E+++G+L 
Sbjct: 527 AAKVSEIPFNLEARLNPKKHVSGDLEQTSLLLPPEP----EANVHSFGVLMLEIISGKLS 582

Query: 568 YLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMR 627
           +  + GS+E WA+ YL     L + +DP+L +F EE+LE + ++I+ C++ +  +RP+M+
Sbjct: 583 FSDEYGSIEQWASKYLEK-DDLGEMIDPSLKTFKEEELEVICDVIRECLKTEQRQRPSMK 641

Query: 628 DIAAILREITGITPDGAIPKLSPLWWAEIEILSTEA 663
           D+A  L+++  ITP+ A P+ SPLWWAE+EILS+EA
Sbjct: 642 DVAEQLKQVINITPEKATPRSSPLWWAELEILSSEA 677

May be involved in the regulation of root hairs development.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGU7|Y5458_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g45840 OS=Arabidopsis thaliana GN=At5g45840 PE=2 SV=1

 Score =  500 bits (1288), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 282/678 (41%), Positives = 393/678 (57%), Gaps = 63/678 (9%)

Query: 32  GLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAP 91
           G  LL+ R RV  DP+G L +W   D  ++ CSWFGV C D KV  LNL    L GTLAP
Sbjct: 34  GFVLLKFRARVDSDPHGTLANWNVSD-HDHFCSWFGVTCVDNKVQMLNLSGCSLGGTLAP 92

Query: 92  EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151
           E+  L+ ++S+IL  N  SG IP  F    +LE LD   NN +G +P +L    +   LL
Sbjct: 93  ELSQLSELRSLILSKNKLSGDIPNEFASFAKLEFLDLRDNNLNGVVPPELNKVLTPENLL 152

Query: 152 LDNNDFVGSLSPEIYKLQVLSESQVDEG-QLSSAAKKEQSCYERSIKWNGVLDEDTVQRR 210
           L  N F G ++ +  +LQ L + Q+++  +LSS +     C  R + +        V RR
Sbjct: 153 LSGNKFAGFMTVKFLRLQSLYKVQMNKNRELSSVSADVLDCVNRKLGY-------CVSRR 205

Query: 211 LLQINPFRNLKGRILGIAPTSSPPPSSDAIPPASVGSSDDTKANETSSDRNDSVSPPKLS 270
            L        K  +L I  TS            +   +     NETS  +   +   + S
Sbjct: 206 SLITR--NKAKAFVLRIRATSRHYMVRRESHGKNYVVNYHPSENETSIFKRRELLE-ETS 262

Query: 271 NPAPAPAPNQTPTPTP---SIPIPRPSSS------------------------------- 296
           N A  PAP+ TP+P+P   +I  PR S S                               
Sbjct: 263 NLAAMPAPD-TPSPSPEIITIVFPRSSGSFPALTNAKKRIPPLIPPSSPPPLPTNNTIAS 321

Query: 297 ----QSHQKSGGSSSKHIAILGGVIGGAILLVATVGIYLCRCNKVSTVKPWATGLSGQLQ 352
               +  +KS G     + ++ GV     +L+    I+  R   V ++ PW TGLSGQLQ
Sbjct: 322 DPPRKFEEKSKGFKDVWLYVVIGVAAFVAMLIIVAVIFFFRKRAVKSIGPWKTGLSGQLQ 381

Query: 353 KAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPK 412
           KAFVTGVPKL RSELE ACEDFSN+I +    TVYKGTLS+GVEIAVAS ++   ++W +
Sbjct: 382 KAFVTGVPKLNRSELETACEDFSNIIEAFDGYTVYKGTLSSGVEIAVASTAILETREWTR 441

Query: 413 NLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHL 472
            +E+ +R++IDT+S+VNHKNF+NLIG+CEE+EPF RMMVFEYAPNGTLFEH+H KE EHL
Sbjct: 442 AMEMTYRRRIDTMSRVNHKNFINLIGYCEEDEPFNRMMVFEYAPNGTLFEHLHDKEMEHL 501

Query: 473 DWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM 532
           DW  R RI MG AYCL++MH+LNPPI+H  L SSA++LT+DYAAK+ ++ F  +      
Sbjct: 502 DWNARTRIIMGTAYCLQYMHELNPPISHTKLVSSAIYLTDDYAAKVGEVPFSGQTG---- 557

Query: 533 AATSKKLSSAPSASL-------ESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG 585
           +   K +S     SL       E+NVY+FGVL+ E+++G+L    + GS+  WA+ YL  
Sbjct: 558 SKPRKPMSGDLDQSLLPLPPEPETNVYSFGVLMLEIISGKLSDSEEEGSILKWASKYLEN 617

Query: 586 VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAI 645
              L+  +DPTL+++ EE+LE + ++ + C++ D  +RP M+ +   L+E+  I+ + A 
Sbjct: 618 -DNLRDMIDPTLTTYKEEELEAICDVARHCLKLDESQRPKMKYVVQQLKEVINISQEQAT 676

Query: 646 PKLSPLWWAEIEILSTEA 663
           P+LSPLWWAE+EILS+EA
Sbjct: 677 PRLSPLWWAELEILSSEA 694

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SIZ4|Y2027_ARATH Inactive receptor-like serine/threonine-protein kinase At2g40270 OS=Arabidopsis thaliana GN=At2g40270 PE=1 SV=2

 Score =  456 bits (1173), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 244/487 (50%), Positives = 327/487 (67%), Gaps = 51/487 (10%)

Query: 193 ERSIKWNGVLDEDTV-------QRRLLQINPFRNL------KGRILG--IAPTSSPPPSS 237
           E S+K +   DED+         R+ L  NP+++L      K R++     P+SSP P+ 
Sbjct: 35  EDSLKKDLSSDEDSTYLKAFGFHRKTLVRNPYKDLPSRKDRKNRVVAATTTPSSSPEPAP 94

Query: 238 DAIPPASVGSSDDTKANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSSQ 297
             +          TKA+  S  +  S +     + +P+P+      P  + PIPR S S 
Sbjct: 95  KHV---------STKASTVSEPQKRSST----QDVSPSPS-----APLANSPIPRNSHSS 136

Query: 298 SHQKSGGSSSKHIAILGGVIGGA--ILLVATVGIYLCRCNKVSTVKPWATGLSGQLQKAF 355
                       + ++ G +GGA  +LLVAT G+Y        TV PW TGLSGQLQK F
Sbjct: 137 ------------VPLVVGCVGGAFFLLLVAT-GLYFFTSKAGKTVNPWRTGLSGQLQKVF 183

Query: 356 VTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLE 415
           VTG+P LKRSE+EAACEDFSNVIGS PIG ++KGTLS+GVEIAVAS +  +AKDW  + E
Sbjct: 184 VTGIPVLKRSEIEAACEDFSNVIGSCPIGKLFKGTLSSGVEIAVASFATTTAKDWKDSTE 243

Query: 416 VQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWG 475
           + FRKKI+ LSK+NHKNF NL+G+CEE+EPFTR+++FEYAPNG+LFEH+H KESEHLDWG
Sbjct: 244 IHFRKKIEMLSKINHKNFANLLGYCEEKEPFTRILIFEYAPNGSLFEHLHYKESEHLDWG 303

Query: 476 MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAAT 535
           MRLRIAMG+AYCL+HMHQLNPPIAH  L SS++ LTEDYA K+SD SF +      +   
Sbjct: 304 MRLRIAMGLAYCLDHMHQLNPPIAHTNLVSSSLQLTEDYAVKVSDFSFGSSETETNINNN 363

Query: 536 SKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDN-GSLEDWAADYLSGVQPLQQFVD 594
           +   +   + + E N+Y+FG+LLFEM+TG+L   V+   S++    D+L G + L + VD
Sbjct: 364 TVIDTHISALNPEDNIYSFGLLLFEMITGKLIESVNKPDSVDSSLVDFLRG-ETLAKMVD 422

Query: 595 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWA 654
           PTL S+D  ++E +GE+IKSC+R DP++RPTM+++   LREITG++P+ A PKLSPLWWA
Sbjct: 423 PTLESYD-AKIENIGEVIKSCLRTDPKERPTMQEVTGWLREITGLSPNDATPKLSPLWWA 481

Query: 655 EIEILST 661
           E+E+LST
Sbjct: 482 ELEVLST 488

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYN6|Y3565_ARATH Probable inactive receptor-like protein kinase At3g56050 OS=Arabidopsis thaliana GN=At3g56050 PE=2 SV=1

 Score =  436 bits (1120), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 241/436 (55%), Positives = 313/436 (71%), Gaps = 29/436 (6%)

Query: 235 PSSDAIPPAS-VGSSDDTKANETSSDRNDSVSPPKLSNPA---PAPAPNQTPTPTPSIPI 290
           P + A PP+S V +  D K       R+ ++ PP+ S PA    AP P       PS   
Sbjct: 83  PVARATPPSSSVSTRPDAK-------RSSTLPPPQKSPPAQHVSAPPPFVHHVTLPS--- 132

Query: 291 PRPSSSQSHQKSGGSSSKHIAILGGVIGGA--ILLVATVGIYLCRCNKVSTVKPWATGLS 348
                      S  SS+  I I+ G I GA  ILL+AT G++  +     +V PW TGLS
Sbjct: 133 -------LTSSSKTSSNSTIPIVAGCIAGAVFILLLAT-GVFFFKSKAGKSVNPWRTGLS 184

Query: 349 GQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAK 408
           GQLQK F+TGVPKLKRSE+EAACEDFSNVIGS PIGT++KGTLS+GVEIAVASV+ ASAK
Sbjct: 185 GQLQKVFITGVPKLKRSEIEAACEDFSNVIGSCPIGTLFKGTLSSGVEIAVASVATASAK 244

Query: 409 DWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE 468
           +W  N+E+QFRKKI+ LSK+NHKNFVNL+G+CEEEEPFTR++VFEYA NGT+FEH+H KE
Sbjct: 245 EWTNNIEMQFRKKIEMLSKINHKNFVNLLGYCEEEEPFTRILVFEYASNGTVFEHLHYKE 304

Query: 469 SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA 528
           SEHLDW MRLRIAMG+AYCL+HMH L PPI H+ L SS+V LTEDYA K++D +F     
Sbjct: 305 SEHLDWVMRLRIAMGIAYCLDHMHGLKPPIVHSNLLSSSVQLTEDYAVKIADFNFGYLKG 364

Query: 529 MAEMAATSKKL--SSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG-SLEDWAADYLSG 585
            +E  +++  L  ++    + E NV++FG+LLFE++TG+LP  V  G S++   A +L G
Sbjct: 365 PSETESSTNALIDTNISETTQEDNVHSFGLLLFELMTGKLPESVQKGDSIDTGLAVFLRG 424

Query: 586 VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAI 645
            + L++ VDPT+ SFD E++E +GE+IKSC+RAD ++RP M+++   LREITG++PD  I
Sbjct: 425 -KTLREMVDPTIESFD-EKIENIGEVIKSCIRADAKQRPIMKEVTGRLREITGLSPDDTI 482

Query: 646 PKLSPLWWAEIEILST 661
           PKLSPLWWAE+E+LST
Sbjct: 483 PKLSPLWWAELEVLST 498

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGH8|Y1634_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana GN=At1g63430 PE=1 SV=1

 Score =  325 bits (832), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 206/669 (30%), Positives = 339/669 (50%), Gaps = 70/669 (10%)

Query: 29  NDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSDGK--VVNLNLKDLCLE 86
           ++E  AL R +E +  DP   +++W   D  ++PC W G+ CS  K  V+ +N+    ++
Sbjct: 25  SNEVQALRRFKEAIYEDPLLVMSNWN--DPNSDPCDWTGIYCSPSKDHVIKINISASSIK 82

Query: 87  GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHS 146
           G LAPE+  +T+++ +IL  N   G IP+  G L+ L++LD G+N+  GP+P ++G    
Sbjct: 83  GFLAPELGQITYLQELILHGNILIGTIPKEIGNLKNLKILDLGNNHLMGPIPAEIGSLSG 142

Query: 147 LTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIKWNGVLDEDT 206
           + I+ L +N   G L  E+  L+ L E  +D  +L  +                V     
Sbjct: 143 IMIINLQSNGLTGKLPAELGNLKYLRELHIDRNRLQGSLL--------------VAGASG 188

Query: 207 VQRRLLQINPFRNLKG--RILGIAPTS------SPPPSSDAIPPASVG----SSDDTKAN 254
            Q ++   N   N+ G  + L +A  S      + P   + +P  S       + D K  
Sbjct: 189 YQSKVYSSNSSANIAGLCKSLKVADFSYNFFVGNIPKCLENLPRTSFQGNCMQNKDLKHR 248

Query: 255 ETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSHQKSGGSSSKHIAILG 314
            +S   N  +     ++ +P+ AP                 ++ H+ S       + I+ 
Sbjct: 249 SSSQCANAQLVK---THGSPSAAPKHQSAQM---------VAKHHRASKPKWLLALEIVT 296

Query: 315 GVIGGAILLVATVGIYLCRCNKVSTVKPWATGLSGQ------LQKAFVTGVPKLKRSELE 368
           G + G +LLVA         N+ + + PW    S +      +    +  V +L R ELE
Sbjct: 297 GSMVGLLLLVALFSAVHRWNNRSTLIIPWKKSSSEKEKFTVYVDSEMLKDVSRLTRQELE 356

Query: 369 AACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV 428
            ACEDFSN+IG S    +YKGTL  G EIAV S+ V   +DW   LE+ F++++  L+++
Sbjct: 357 VACEDFSNIIGLSADSQIYKGTLKGGSEIAVISLCVKE-EDWTGYLELYFQREVADLARL 415

Query: 429 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCL 488
           NH+N   L+G+C+E  PFTRM+VFEYA NGTL+EH+H  E+  + W  R++I +G+A  L
Sbjct: 416 NHENTAKLLGYCKEISPFTRMLVFEYASNGTLYEHLHYGEAALVSWARRMKIVIGIARGL 475

Query: 489 EHMH-QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSA-- 545
           +++H +L+PP   + L+S+A++LTED+  KL D   W  I +A      + +SS  S   
Sbjct: 476 KYLHMELDPPFTISELSSNAIYLTEDFTPKLVDFECWKTI-LARSEKNLRNISSQGSICV 534

Query: 546 ----------SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP 595
                      +  N+Y FG+LL E+V+GR PY  D G L +WA ++L   + +   VDP
Sbjct: 535 LPNGMESRYLDVSGNIYAFGILLLEIVSGRPPYCKDKGFLIEWAKEFLEAPEAMSGLVDP 594

Query: 596 TLSSFDEEQLETLGELIKSCVRADP------EKRPTMRDIAAILREITGITPDGAIPKLS 649
            L  F++E LET+ E+   C+  DP        +P+++++   L     ++    + + S
Sbjct: 595 ELKHFNQEDLETVCEVASQCLNRDPTNNNNNHNKPSVQELCETLESRISLSISAEL-RSS 653

Query: 650 PLWWAEIEI 658
            L WAE+ +
Sbjct: 654 SLAWAELAL 662

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  169 bits (428), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 165/586 (28%), Positives = 261/586 (44%), Gaps = 43/586 (7%)

Query: 78   LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 137
            L L D    G L  EI  L+ + ++ + +N  +G +P      + L+ LD   NNFSG L
Sbjct: 510  LQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTL 569

Query: 138  PNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCY----- 192
            P+++G  + L +L L NN+  G++   +  L  L+E Q+     + +  +E         
Sbjct: 570  PSEVGSLYQLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPRELGSLTGLQI 629

Query: 193  ERSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAPTSSPPPSSDAIPPASVGS--SDD 250
              ++ +N +  E   +   L +  F  L          S   PSS A   + +G   S +
Sbjct: 630  ALNLSYNKLTGEIPPELSNLVMLEFLLLN-----NNNLSGEIPSSFANLSSLLGYNFSYN 684

Query: 251  TKANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSHQKSGG-SSSKH 309
            +        RN S+S    +     P  NQ     P  P      SQS  K GG  SSK 
Sbjct: 685  SLTGPIPLLRNISMSSFIGNEGLCGPPLNQCIQTQPFAP------SQSTGKPGGMRSSKI 738

Query: 310  IAILGGVIGGAILLVATVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPK--LKRSEL 367
            IAI   VIGG  L++  + +YL R   V TV   A           +   PK      +L
Sbjct: 739  IAITAAVIGGVSLMLIALIVYLMR-RPVRTVASSAQDGQPSEMSLDIYFPPKEGFTFQDL 797

Query: 368  EAACEDF--SNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTL 425
             AA ++F  S V+G    GTVYK  L  G  +AV  ++         N++  FR +I TL
Sbjct: 798  VAATDNFDESFVVGRGACGTVYKAVLPAGYTLAVKKLASNHEGGNNNNVDNSFRAEILTL 857

Query: 426  SKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMA 485
              + H+N V L GFC  +   + ++++EY P G+L E +H   S +LDW  R +IA+G A
Sbjct: 858  GNIRHRNIVKLHGFCNHQG--SNLLLYEYMPKGSLGEILH-DPSCNLDWSKRFKIALGAA 914

Query: 486  YCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS--- 541
              L ++H    P I H  + S+ + L + + A + D      I M    + S    S   
Sbjct: 915  QGLAYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPHSKSMSAIAGSYGY 974

Query: 542  -APSASL------ESNVYNFGVLLFEMVTGRLPY--LVDNGSLEDWAADYLSGVQPLQQF 592
             AP  +       +S++Y++GV+L E++TG+ P   +   G + +W   Y+         
Sbjct: 975  IAPEYAYTMKVTEKSDIYSYGVVLLELLTGKAPVQPIDQGGDVVNWVRSYIRRDALSSGV 1034

Query: 593  VDPTLSSFDEEQLETLGELIKS---CVRADPEKRPTMRDIAAILRE 635
            +D  L+  DE  +  +  ++K    C    P  RP+MR +  +L E
Sbjct: 1035 LDARLTLEDERIVSHMLTVLKIALLCTSVSPVARPSMRQVVLMLIE 1080

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49545|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1

 Score =  166 bits (419), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 159/604 (26%), Positives = 262/604 (43%), Gaps = 78/604 (12%)

Query: 62  PCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELE 121
           P   FG+     K+  + L+D  L G L        ++  I L NN  SG +P   G   
Sbjct: 424 PKGLFGLP----KLTQVELQDNYLSGELPVAGGVSVNLGQISLSNNQLSGPLPPAIGNFT 479

Query: 122 ELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQL 181
            ++ L    N F GP+P+++G    L+ +   +N F G ++PEI + ++L+   +   +L
Sbjct: 480 GVQKLLLDGNKFQGPIPSEVGKLQQLSKIDFSHNLFSGRIAPEISRCKLLTFVDLSRNEL 539

Query: 182 SSAAKKEQSCYERSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAPTSSPPPSSDAIP 241
           S     E +  +       +L+   + R  L      ++ G I  +   +S   S + + 
Sbjct: 540 SGEIPNEITAMK-------ILNYLNLSRNHL----VGSIPGSISSMQSLTSLDFSYNNLS 588

Query: 242 PASVGSSDDTKANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSHQK 301
               G+   +  N TS   N     P L  P   P  +                 QSH K
Sbjct: 589 GLVPGTGQFSYFNYTSFLGN-----PDLCGPYLGPCKDGVAK----------GGHQSHSK 633

Query: 302 SGGSSSKHIAILGGVIGGAILLVATVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPK 361
              S+S  + ++ G++  +I       I      K S  + W          AF      
Sbjct: 634 GPLSASMKLLLVLGLLVCSIAFAVVAIIKARSLKKASESRAWRL-------TAF------ 680

Query: 362 LKRSELEAACEDF------SNVIGSSPIGTVYKGTLSNGVEIAV---ASVSVASAKDWPK 412
                L+  C+D        N+IG    G VYKG + NG  +AV   A++S  S+ D   
Sbjct: 681 ---QRLDFTCDDVLDSLKEDNIIGKGGAGIVYKGVMPNGDLVAVKRLAAMSRGSSHDHGF 737

Query: 413 NLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHL 472
           N E+Q      TL ++ H++ V L+GFC   E  T ++V+EY PNG+L E +H K+  HL
Sbjct: 738 NAEIQ------TLGRIRHRHIVRLLGFCSNHE--TNLLVYEYMPNGSLGEVLHGKKGGHL 789

Query: 473 DWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI---- 527
            W  R +IA+  A  L ++H   +P I H  + S+ + L  ++ A ++D      +    
Sbjct: 790 HWDTRYKIALEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSG 849

Query: 528 ---AMAEMAATSKKLSSAPSASL----ESNVYNFGVLLFEMVTGRLPY--LVDNGSLEDW 578
               M+ +A +   ++   + +L    +S+VY+FGV+L E+VTGR P     D   +  W
Sbjct: 850 TSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQW 909

Query: 579 AADYL-SGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT 637
                 S    + + +DP LSS    ++  +  +   CV     +RPTMR++  IL EI 
Sbjct: 910 VRKMTDSNKDSVLKVLDPRLSSIPIHEVTHVFYVAMLCVEEQAVERPTMREVVQILTEIP 969

Query: 638 GITP 641
            + P
Sbjct: 970 KLPP 973

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q1PEM5|PERK3_ARATH Proline-rich receptor-like protein kinase PERK3 OS=Arabidopsis thaliana GN=PERK3 PE=2 SV=2

 Score =  157 bits (398), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 124/394 (31%), Positives = 199/394 (50%), Gaps = 58/394 (14%)

Query: 271 NPAPAPAPN----QTPTPTPSIPIPRPSSSQSHQKSGGSSSKHIAILGGVIGGAILLVAT 326
           NP P  +P+     TPT TP   +  PS S+    S G      A++G  IGG +  V T
Sbjct: 90  NPPPPASPSGQEPTTPTMTPGFSLSPPSPSRL---STG------AVVGISIGGGVF-VLT 139

Query: 327 VGIYLCRCNKVSTVK--PWATGLS-GQLQKAFVTGVPKLKRSELEAACEDFS--NVIGSS 381
           +  +LC+  +    K  P   GL  G  Q  F  G       EL  A   FS  N++G  
Sbjct: 140 LIFFLCKKKRPRDDKALPAPIGLVLGIHQSTFTYG-------ELARATNKFSEANLLGEG 192

Query: 382 PIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCE 441
             G VYKG L+NG E+AV  + V SA+      E +F+ +++ +S+++H+N V+L+G+C 
Sbjct: 193 GFGFVYKGILNNGNEVAVKQLKVGSAQG-----EKEFQAEVNIISQIHHRNLVSLVGYCI 247

Query: 442 EEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAH 500
                 R++V+E+ PN TL  H+H K    ++W +RL+IA+  +  L ++H+  NP I H
Sbjct: 248 AGA--QRLLVYEFVPNNTLEFHLHGKGRPTMEWSLRLKIAVSSSKGLSYLHENCNPKIIH 305

Query: 501 NYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS---------APSASL--ES 549
             + ++ + +   + AK++D     +IA+      S ++           A S  L  +S
Sbjct: 306 RDIKAANILIDFKFEAKVADFGLA-KIALDTNTHVSTRVMGTFGYLAPEYAASGKLTEKS 364

Query: 550 NVYNFGVLLFEMVTGRLPYLVDN----GSLEDWAADYLSGVQPLQQ-----FVDPTLSS- 599
           +VY+FGV+L E++TGR P   +N     SL DWA   L  VQ L++       D  L++ 
Sbjct: 365 DVYSFGVVLLELITGRRPVDANNVYADDSLVDWARPLL--VQALEESNFEGLADIKLNNE 422

Query: 600 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 633
           +D E++  +     +CVR    +RP M  +  +L
Sbjct: 423 YDREEMARMVACAAACVRYTARRRPRMDQVVRVL 456

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8RY65|NIK2_ARATH Protein NSP-INTERACTING KINASE 2 OS=Arabidopsis thaliana GN=NIK2 PE=1 SV=1

 Score =  155 bits (393), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 163/631 (25%), Positives = 282/631 (44%), Gaps = 113/631 (17%)

Query: 28  LNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEG 87
           +N E +AL+ ++  +  DP+G L +W   DT  +PCSW  + CSDG V+ L      L G
Sbjct: 39  VNFEVVALIGIKSSLT-DPHGVLMNWD--DTAVDPCSWNMITCSDGFVIRLEAPSQNLSG 95

Query: 88  TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSL 147
           TL+  I +LT++++++L+NN  +G I                        P+++G    L
Sbjct: 96  TLSSSIGNLTNLQTVLLQNNYITGNI------------------------PHEIGKLMKL 131

Query: 148 TILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIKWNGVLDEDTV 207
             L L  N+F G +   +   + L   +V+   L+       +              +  
Sbjct: 132 KTLDLSTNNFTGQIPFTLSYSKNLQYLRVNNNSLTGTIPSSLA--------------NMT 177

Query: 208 QRRLLQINPFRNLKGRILGIAPTSSPPPSSDAIPPASVGSSDDTKANETSSDRNDSVSPP 267
           Q   L ++ + NL G          P P S A     +G+S   +   T ++++ + + P
Sbjct: 178 QLTFLDLS-YNNLSG----------PVPRSLAKTFNVMGNS---QICPTGTEKDCNGTQP 223

Query: 268 KLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSHQKSGGSSSKHIAILGGV-IGGAILLVAT 326
           K       P          SI +   +SSQ+    GG+ ++ IA++ GV +    LL+  
Sbjct: 224 K-------PM---------SITL---NSSQNKSSDGGTKNRKIAVVFGVSLTCVCLLIIG 264

Query: 327 VGIYLC---RCNKVSTVKPWATGLSGQLQKAFVTG-VPKLKRSELEAACEDFS--NVIGS 380
            G  L    R NK    +     ++ Q ++    G + +    EL++A  +FS  N++G 
Sbjct: 265 FGFLLWWRRRHNK----QVLFFDINEQNKEEMCLGNLRRFNFKELQSATSNFSSKNLVGK 320

Query: 381 SPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNL-EVQFRKKIDTLSKVNHKNFVNLIGF 439
              G VYKG L +G  IAV  +     KD      EVQF+ +++ +S   H+N + L GF
Sbjct: 321 GGFGNVYKGCLHDGSIIAVKRL-----KDINNGGGEVQFQTELEMISLAVHRNLLRLYGF 375

Query: 440 CEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMH-QLNPPI 498
           C       R++V+ Y  NG++   +  K    LDWG R RIA+G    L ++H Q +P I
Sbjct: 376 CTTSSE--RLLVYPYMSNGSVASRLKAKPV--LDWGTRKRIALGAGRGLLYLHEQCDPKI 431

Query: 499 AHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSK----------KLSSAPSASLE 548
            H  + ++ + L + + A + D      +   E   T+           +  S   +S +
Sbjct: 432 IHRDVKAANILLDDYFEAVVGDFGLAKLLDHEESHVTTAVRGTVGHIAPEYLSTGQSSEK 491

Query: 549 SNVYNFGVLLFEMVTGRLPYLV-----DNGSLEDWAADYLSGVQPLQQFVDPTL-SSFDE 602
           ++V+ FG+LL E++TG             G++ DW    L   + L+Q VD  L S++D 
Sbjct: 492 TDVFGFGILLLELITGLRALEFGKAANQRGAILDWVKK-LQQEKKLEQIVDKDLKSNYDR 550

Query: 603 EQLETLGELIKSCVRADPEKRPTMRDIAAIL 633
            ++E + ++   C +  P  RP M ++  +L
Sbjct: 551 IEVEEMVQVALLCTQYLPIHRPKMSEVVRML 581

Involved in defense response to geminivirus infection (By similarity). Phosphorylates RPL10A in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  154 bits (389), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 158/607 (26%), Positives = 261/607 (42%), Gaps = 66/607 (10%)

Query: 73   GKVVNL---NLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFG 129
            GK+ NL    L +    G + PEI +LT I    + +N  +G IP+  G    ++ LD  
Sbjct: 496  GKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLS 555

Query: 130  HNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQ-----------VDE 178
             N FSG +  +LG    L IL L +N   G +      L  L E Q           V+ 
Sbjct: 556  GNKFSGYIAQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLSENIPVEL 615

Query: 179  GQLSSAAKKEQSCYERSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAPTSSPPPSSD 238
            G+L+S        +      +G + +     ++L+I    +   ++ G  P S     S 
Sbjct: 616  GKLTSLQISLNISHN---NLSGTIPDSLGNLQMLEILYLND--NKLSGEIPASIGNLMSL 670

Query: 239  AIPPAS----VGSSDDTKANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPS 294
             I   S    VG+  DT   +   D ++      L N       +Q     P +P    S
Sbjct: 671  LICNISNNNLVGTVPDTAVFQ-RMDSSNFAGNHGLCN-------SQRSHCQPLVP---HS 719

Query: 295  SSQSHQKSGGSSSKHIAILGGVIGGAILLVATVGIYLCRCNKVSTVKPWATGLSGQLQKA 354
             S+ +    GS  + I  +  ++ G++ L+  +G+    C  +   +P    L  Q +  
Sbjct: 720  DSKLNWLINGSQRQKILTITCIVIGSVFLITFLGL----CWTIKRREPAFVALEDQTKPD 775

Query: 355  FVTG--VPK--LKRSELEAACEDFSN--VIGSSPIGTVYKGTLSNGVEIAVASVSVASAK 408
             +     PK       L  A  +FS   V+G    GTVYK  +S G  IAV  ++     
Sbjct: 776  VMDSYYFPKKGFTYQGLVDATRNFSEDVVLGRGACGTVYKAEMSGGEVIAVKKLNSRGEG 835

Query: 409  DWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE 468
                N    FR +I TL K+ H+N V L GFC  +   + ++++EY   G+L E +   E
Sbjct: 836  ASSDN---SFRAEISTLGKIRHRNIVKLYGFCYHQN--SNLLLYEYMSKGSLGEQLQRGE 890

Query: 469  SE-HLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE 526
                LDW  R RIA+G A  L ++H    P I H  + S+ + L E + A + D      
Sbjct: 891  KNCLLDWNARYRIALGAAEGLCYLHHDCRPQIVHRDIKSNNILLDERFQAHVGDFGLAKL 950

Query: 527  I------AMAEMAATSKKLSSAPSASL----ESNVYNFGVLLFEMVTGRLPY--LVDNGS 574
            I      +M+ +A +   ++   + ++    + ++Y+FGV+L E++TG+ P   L   G 
Sbjct: 951  IDLSYSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKPPVQPLEQGGD 1010

Query: 575  LEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIK---SCVRADPEKRPTMRDIAA 631
            L +W    +  + P  +  D  L + D+  +  +  ++K    C    P  RPTMR++ A
Sbjct: 1011 LVNWVRRSIRNMIPTIEMFDARLDTNDKRTVHEMSLVLKIALFCTSNSPASRPTMREVVA 1070

Query: 632  ILREITG 638
            ++ E  G
Sbjct: 1071 MITEARG 1077

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	664
356569292	644	PREDICTED: probable LRR receptor-like se	0.912	0.940	0.606	0.0
356537999	638	PREDICTED: probable LRR receptor-like se	0.915	0.952	0.612	0.0
356551399	643	PREDICTED: probable LRR receptor-like se	0.951	0.982	0.588	0.0
357461359	645	Ser-thr protein kinase [Medicago truncat	0.960	0.989	0.587	0.0
449460929	680	PREDICTED: probable LRR receptor-like se	0.978	0.955	0.558	0.0
356499209	645	PREDICTED: probable LRR receptor-like se	0.953	0.981	0.580	0.0
356569509	699	PREDICTED: probable LRR receptor-like se	0.992	0.942	0.530	0.0
357441925	627	Ser-thr protein kinase [Medicago truncat	0.909	0.963	0.555	0.0
449523573	657	PREDICTED: probable LRR receptor-like se	0.942	0.952	0.573	0.0
356498966	686	PREDICTED: probable LRR receptor-like se	0.966	0.935	0.516	1e-179

>gi|356569292|ref|XP_003552837.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1-like [Glycine max]

 Score =  753 bits (1945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/655 (60%), Positives = 473/655 (72%), Gaps = 49/655 (7%)

Query: 20  QSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLN 79
           Q+  LC SLN+EG ALL+ +  +V DP+ AL++W + +   NPC+WFGVECSDG+VV LN
Sbjct: 27  QNFSLCCSLNEEGKALLKFKHGIVNDPFDALSNWVNDEVAVNPCNWFGVECSDGRVVVLN 86

Query: 80  LKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN 139
           LKDLCLEG L PE+ +L HIKSIILRNNSF GIIPEG   L ELEVLD G+NNFSGPLP 
Sbjct: 87  LKDLCLEGNLVPELANLVHIKSIILRNNSFYGIIPEGIAHLNELEVLDLGYNNFSGPLPR 146

Query: 140 DLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIKWN 199
           DLG N SLTILLLDNND +   SPEI +L++LSE QVDE QL  A +K  +C  RSIK  
Sbjct: 147 DLGNNISLTILLLDNNDHLCGFSPEINELKMLSEYQVDENQLIRA-EKVPAC-RRSIKQ- 203

Query: 200 GVLDEDTVQRRLLQINPFRNLKGRILGIAPTSSPPPSSDAIPPASVGSSDDTKANETSS- 258
                   Q R +  N  +N   R+L         P +   P +             +  
Sbjct: 204 --------QSRHVGQN--KNGVQRLLQTRTHEGGSPFNRVFPVSPAPFPSAPPPAPATPP 253

Query: 259 --------DRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSHQKSGGSSSKHI 310
                   DRN+S SP      +P P P        S P+ + SSS++H          +
Sbjct: 254 VVQKPAPVDRNNSASP------SPLPGPR-------SAPLYKSSSSKNHV---------V 291

Query: 311 AILGGVIGGAI-LLVATVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEA 369
            IL GV+GGA+ LL++ +G+YLC+ NKV+TVKPWATGLSGQLQ AFVTGVPKLKRSELEA
Sbjct: 292 VILAGVMGGAVFLLISIIGLYLCKTNKVATVKPWATGLSGQLQNAFVTGVPKLKRSELEA 351

Query: 370 ACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN 429
           ACEDFSNVIG+S IGTVYKGTLS+GVEIAVASV+  S+KDW K LE QFR KIDTLSKVN
Sbjct: 352 ACEDFSNVIGTSSIGTVYKGTLSSGVEIAVASVAATSSKDWSKTLEAQFRNKIDTLSKVN 411

Query: 430 HKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLE 489
           HKNFVNL+G CEE+EPFTRM+VFEYAPNGTLFEH+HIKESEHLDWG RLRIAMGMAYCL+
Sbjct: 412 HKNFVNLLGHCEEDEPFTRMVVFEYAPNGTLFEHLHIKESEHLDWGTRLRIAMGMAYCLQ 471

Query: 490 HMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLES 549
           HMHQL PP+  + LNSSAV LT+DYAAK+SDLSF NEIA A + + ++K +    A   S
Sbjct: 472 HMHQLEPPLVLSNLNSSAVQLTDDYAAKISDLSFLNEIASAVIKSPARKNTDMTPA---S 528

Query: 550 NVYNFGVLLFEMVTGRLPYLVDN-GSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETL 608
           N+Y+FGV+LFEMVTGRLPY VDN GSL+DWA+ YL G QPL++ VDPTL+SF EEQLE +
Sbjct: 529 NIYSFGVILFEMVTGRLPYSVDNDGSLDDWASHYLQGDQPLKEMVDPTLASFQEEQLEQV 588

Query: 609 GELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIEILSTEA 663
             LIKSCV  D ++RPTM+++   LREIT ITPD A+PKLSPLWWAE+EI S  A
Sbjct: 589 DALIKSCVHPDQKQRPTMKEVCVRLREITKITPDAAVPKLSPLWWAELEIASVNA 643

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537999|ref|XP_003537493.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1-like [Glycine max]

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/647 (61%), Positives = 480/647 (74%), Gaps = 39/647 (6%)

Query: 20  QSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLN 79
           Q+  LC SLN+EG ALL+ ++ +V DP+ AL++W + + E NPC+WFGVECSDG+VV LN
Sbjct: 27  QNFSLCCSLNEEGKALLKFKQGIVNDPFDALSNWVNDEVEVNPCNWFGVECSDGRVVVLN 86

Query: 80  LKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN 139
           LKDLCLEG L PE+ +L HIKSIILRNNSF GIIP+G   L E+EVLD G+NNFSGPLP 
Sbjct: 87  LKDLCLEGNLVPELANLVHIKSIILRNNSFHGIIPQGIAHLNEMEVLDLGYNNFSGPLPT 146

Query: 140 DLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKE-QSCYERSIKW 198
           DLG N  LTILLLDNND +   SPEI +L+++SE QVDE QLSSA K   +S    + + 
Sbjct: 147 DLGNNIPLTILLLDNNDHLCGFSPEINELKMVSEYQVDENQLSSAEKVPIRSIKRHAGQN 206

Query: 199 NGVLDEDTVQRRLLQINPFRNLKGRILGIAPTSSPPPSSDAIPPASVGSSDDTKANETSS 258
           NGV       R+LLQ+   R  +G            P +   P        D+ A   S+
Sbjct: 207 NGV-------RKLLQV---RTREGG----------SPFNRVFP--------DSPAPFPSA 238

Query: 259 DRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSHQKSGGSSSKHIAILGGVIG 318
                 +PP +  PAP    N + +P+P +P PR   S    KS  S +  + IL GV+G
Sbjct: 239 PSPAPATPPVVQKPAPVDR-NNSASPSP-LPEPR---SAPLSKSSSSKNHLVVILAGVMG 293

Query: 319 GAI-LLVATVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNV 377
           G + LL++ +G+YLC+ NKV+TVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNV
Sbjct: 294 GVVFLLISIIGLYLCKTNKVATVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNV 353

Query: 378 IGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 437
           IG+S IGTVYKGTLS+GVEIAVASV+  S+KDW K LE QFR KIDTLSKVNHKNFVNL+
Sbjct: 354 IGTSSIGTVYKGTLSSGVEIAVASVAATSSKDWSKTLEAQFRNKIDTLSKVNHKNFVNLL 413

Query: 438 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPP 497
           G CEE+EPFTRM+VFEYAPNGTLFEH+HIKESEHLDWG RLR+AMGMAYCL+HMHQL PP
Sbjct: 414 GHCEEDEPFTRMVVFEYAPNGTLFEHLHIKESEHLDWGTRLRVAMGMAYCLQHMHQLEPP 473

Query: 498 IAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVL 557
           +  + LNSS V LT+DYAAK+SDLSF NEIA A + + ++K +    A   SN+Y+FGV+
Sbjct: 474 LVLSNLNSSGVQLTDDYAAKISDLSFLNEIASAVIKSPARKNTDMTPA---SNIYSFGVI 530

Query: 558 LFEMVTGRLPYLVDN-GSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCV 616
           LFEMVTGRLPY VDN GSL+DWA+ YL G QPL++ VDPTL+SF EEQLE +  LIKSCV
Sbjct: 531 LFEMVTGRLPYSVDNDGSLDDWASHYLQGDQPLKEMVDPTLASFQEEQLEQVDALIKSCV 590

Query: 617 RADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIEILSTEA 663
             D ++RPTM+++   LREIT ITPD A+PKLSPLWWAE+EI S +A
Sbjct: 591 HPDQKQRPTMKEVCVRLREITKITPDAAVPKLSPLWWAELEIASVDA 637

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551399|ref|XP_003544063.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1-like [Glycine max]

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/673 (58%), Positives = 483/673 (71%), Gaps = 41/673 (6%)

Query: 1   MDQNWKFTR---LGVLF----VVLISQSLCLCWSLNDEGLALLRLRERVVRDPYGALTSW 53
           MD+N K +R   L + F    V  +   L LC SLN+EG ALL+LR+R+V DP+ AL++W
Sbjct: 1   MDKNRKLSRFKDLSIAFCFVAVFFLFHHLGLCCSLNEEGNALLKLRQRIVSDPFDALSNW 60

Query: 54  RSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGII 113
              +   +PC+WFGVECSDG+VV LNLKDLCL GTLAPE+  L +IKSIILRNNSFSG I
Sbjct: 61  VDDEASVDPCNWFGVECSDGRVVVLNLKDLCLGGTLAPELVKLVNIKSIILRNNSFSGTI 120

Query: 114 PEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
           PEGF +L+ELEVLD G+NNFSG LP DLG N SLTILLLDNN+F+  LSPEI +L++LSE
Sbjct: 121 PEGFVQLKELEVLDLGYNNFSGHLPADLGSNISLTILLLDNNEFLVGLSPEINELRMLSE 180

Query: 174 SQVDEGQLSSAAKKEQSCYERSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAPTSSP 233
            QVDE QL++AAK   +C ER+             R + Q        G+    +  S+ 
Sbjct: 181 CQVDENQLTNAAKMP-ACTERA-----------TTRHIGQ--------GKGTRRSQHSNT 220

Query: 234 PPSSDAIPPASVGSSDDTKANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRP 293
            P+++      V +      +  S+  + S  PP      P  AP++      S P    
Sbjct: 221 SPAANHYQFNRVAAPPLESPSSPSASPSGSAKPP-----VPKLAPHRKNASDSSPPHSTS 275

Query: 294 SS-SQSHQKSGGSSSKHIAILGGVIGGAILLV-ATVGIYLCRCNKVSTVKPWATGLSGQL 351
            S + S  KS  S    + IL GVIGGA+ L+ +++GIYLC+  KV+ V+PWA GLSGQL
Sbjct: 276 GSGTLSKTKSTSSKVHTVPILAGVIGGAVFLIFSSIGIYLCK-TKVANVRPWAMGLSGQL 334

Query: 352 QKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWP 411
           QKAFVTG  KLKRS+LEAACEDFSNVIG+SPIG +YKGTLS GVEIAVA VS+ S+K+W 
Sbjct: 335 QKAFVTGAQKLKRSDLEAACEDFSNVIGNSPIGILYKGTLSGGVEIAVAFVSITSSKNWS 394

Query: 412 KNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEH 471
           K LE QFR KID LSKVNHKNFVNLIG+CEEEEPFTRM+VFEYAPNGTLFEH+HIKE+EH
Sbjct: 395 KTLEAQFRSKIDKLSKVNHKNFVNLIGYCEEEEPFTRMLVFEYAPNGTLFEHLHIKEAEH 454

Query: 472 LDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE 531
           LDWG RLR+A G+AYCL+HMHQL+PP+A   LNSSAV+LT+DYAAKLSDLSF N+IA AE
Sbjct: 455 LDWGTRLRVATGVAYCLQHMHQLDPPMALIKLNSSAVYLTDDYAAKLSDLSFSNDIASAE 514

Query: 532 MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDN-GSLEDWAADYLSGVQPLQ 590
             A  K     P A+ ESNVY+ GVLLFEMVTGRLPY V++  SLE+WA+ YL   QPL+
Sbjct: 515 TRAMDK-----PLATPESNVYSLGVLLFEMVTGRLPYSVEHKDSLENWASHYLEVDQPLK 569

Query: 591 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSP 650
           + VDP L S+ E+QLE +  LI SCV  DP+KRPTM+D++  LREIT ITP+ A+PKLSP
Sbjct: 570 EIVDPILVSYQEDQLEQVASLITSCVHPDPQKRPTMKDVSERLREITKITPESAVPKLSP 629

Query: 651 LWWAEIEILSTEA 663
           LWWAEIEI S EA
Sbjct: 630 LWWAEIEIASAEA 642

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461359|ref|XP_003600961.1| Ser-thr protein kinase [Medicago truncatula] gi|355490009|gb|AES71212.1| Ser-thr protein kinase [Medicago truncatula]

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/666 (58%), Positives = 488/666 (73%), Gaps = 28/666 (4%)

Query: 3   QNWKFTR-LGVLFVVLISQSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENN 61
           + WKF+  L +     +SQ   LC SLNDEG ALL+ +E +  DP+ AL++W   +   +
Sbjct: 2   RKWKFSLFLWLASFCFLSQCFGLCCSLNDEGKALLKFKEGIFSDPFDALSNWVDDEVGVD 61

Query: 62  PCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELE 121
           PC+WFGVEC DG+VV LNLK+LCLEG LA E+ SL HIKSI+LRNNSF GIIPEG   L+
Sbjct: 62  PCNWFGVECLDGRVVVLNLKNLCLEGNLAHELGSLVHIKSIVLRNNSFYGIIPEGIVRLK 121

Query: 122 ELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQL 181
           ELEVLD G+NNFSGPLP D+G N SL ILLLDNND +   S EI +L ++SESQVDE QL
Sbjct: 122 ELEVLDLGYNNFSGPLPKDIGSNISLAILLLDNNDLLCGFSHEINELVLISESQVDEKQL 181

Query: 182 SSAAKKEQSCYERSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAPTSSPPPSSDAIP 241
            SA +K   C  RS KW+    +  + RRLLQ              AP   P   +  IP
Sbjct: 182 ISA-RKLPGCTGRSTKWHNRRSKKGL-RRLLQSG------------APREDPRNRAAIIP 227

Query: 242 PASVGSSDDTKANETSSDRNDSV--SPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSH 299
                S   +     S   + S   +P  +  PA   +P++  + +PS P+P P S    
Sbjct: 228 DTPSPSPSPSPFPSPSPSPSPSSSETPQIVKKPA---SPDRNVSDSPS-PLPTPGSVP-- 281

Query: 300 QKSGGSSSKHIAILGGVIGGA-ILLVATVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTG 358
           Q    S++ H+AI+GG++GGA  +L+ ++ IYL + NKV+TVKPWATGLSGQLQKAFVTG
Sbjct: 282 QLKSNSNNHHVAIVGGIVGGAAFILILSIVIYLFKTNKVATVKPWATGLSGQLQKAFVTG 341

Query: 359 VPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQF 418
           VPKLKRSELEAACEDFSNVIG+SPIG +YKGTLS+GVEIAVASV+V S KDW K  EVQF
Sbjct: 342 VPKLKRSELEAACEDFSNVIGTSPIGNIYKGTLSSGVEIAVASVTVTSLKDWSKTSEVQF 401

Query: 419 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL 478
           RKKIDTLSK+NHKNFVNL+GFCEE+EPFTRM+VFEYAPNGTLFEH+H+KE+EHLDW  RL
Sbjct: 402 RKKIDTLSKMNHKNFVNLLGFCEEDEPFTRMVVFEYAPNGTLFEHLHVKEAEHLDWATRL 461

Query: 479 RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKK 538
           R+A+G AYCL+HMHQL+PP AH+ LN+S+V LT+DYAAK+SDLSF NEIA A++ A +KK
Sbjct: 462 RVAIGTAYCLQHMHQLDPPFAHSDLNTSSVQLTDDYAAKISDLSFLNEIASADIKAAAKK 521

Query: 539 LSSAPSASLESNVYNFGVLLFEMVTGRLPY-LVDNGSLEDWAADYLSGVQPLQQFVDPTL 597
            +    A+L SN+Y+FG++L E+VTGR+PY +  + SLE+WA+ YL G QPL++ VDPTL
Sbjct: 522 HT---DATLASNIYSFGIILLEIVTGRVPYSMGKDDSLEEWASRYLQGDQPLKEIVDPTL 578

Query: 598 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIE 657
           +SF EEQL  +G LIKSCV AD E+RPTM+ I   LREIT I+P+ A+PKLSPLWWAE+E
Sbjct: 579 ASFQEEQLVQIGALIKSCVNADQEQRPTMKQICERLREITKISPEVAVPKLSPLWWAELE 638

Query: 658 ILSTEA 663
           I S +A
Sbjct: 639 IASFDA 644

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460929|ref|XP_004148196.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1-like [Cucumis sativus]

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/681 (55%), Positives = 475/681 (69%), Gaps = 31/681 (4%)

Query: 3   QNWKFTRL-------GVLFVVLISQSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRS 55
           QN  F R        G + + L+ QS  L WSLN+EGL LL+ RERVV DP+G L++W  
Sbjct: 5   QNLSFHRFRLRIGVYGFVVISLLFQSFHLSWSLNEEGLTLLKFRERVVNDPFGVLSNWND 64

Query: 56  CDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPE 115
              + NPC WFGVECSDGKVV+LNLKDLCLEGTL PE+++L HIKSI LRNNSF+G IP+
Sbjct: 65  HKEDINPCFWFGVECSDGKVVSLNLKDLCLEGTLTPELKNLVHIKSINLRNNSFTGTIPQ 124

Query: 116 GFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQ 175
           G G LEELEVLD G+NNF GPLP+DLG N SL ILLLDNN  + SLSPEIY+LQ+LSE Q
Sbjct: 125 GLGGLEELEVLDLGYNNFCGPLPSDLGSNLSLGILLLDNNKDLRSLSPEIYQLQLLSEFQ 184

Query: 176 VDEGQLSSAAKKEQSCYERSIKWNGVLDEDTVQRRLLQINPFR---NLKGRILGIA-PTS 231
           VDE QLS+ A+    C + S+  + V  +D+  RR L+ +  +    ++GR+  +  P +
Sbjct: 185 VDENQLSNTAEGSL-CNKESMSCDAVQVKDSRGRRELRASASQAQLTIQGRVAEVVVPLT 243

Query: 232 SPPPS---SD---------AIPPASVGSSDDTKANETSSDRNDSVSPPKLSNPAPAPAPN 279
            P PS   SD         + P  + GS         S+  N +  PP       AP+  
Sbjct: 244 PPSPSGGNSDRPPSNSPPPSPPAGAQGSQPPPPGTGISTSNNATSPPPSFK----APSEK 299

Query: 280 QTPTPTPSIPIPRPSSSQSHQKSGGSSSKHIAILGGVIGGAILLVATVGIYLCRCNKVST 339
             P     +P P+PSS Q   K+  S    + +  G     I L   VGIYL   NK +T
Sbjct: 300 TPPAAPEGLPSPQPSSKQQGGKNKSSVGVVVGVSVGAAVFVIALA--VGIYLWTNNK-AT 356

Query: 340 VKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAV 399
           VKPWATGLSGQLQKAFVTGVPKLKRSELE +CEDFSNVIG SPIG VYKGTLS+GVEIAV
Sbjct: 357 VKPWATGLSGQLQKAFVTGVPKLKRSELEVSCEDFSNVIGYSPIGPVYKGTLSSGVEIAV 416

Query: 400 ASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGT 459
             +SV S+KDW   LE QFRKKIDTLSK+NHKNFVNLIG+CEEEEPF+RMMVFEYAPNGT
Sbjct: 417 NIISVKSSKDWSMALEAQFRKKIDTLSKINHKNFVNLIGYCEEEEPFSRMMVFEYAPNGT 476

Query: 460 LFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLS 519
           +FEH+H +E EHL+W MR+RI MGMAY LE++H+ + P+ H  L SSAV+LTEDYAAK++
Sbjct: 477 VFEHLHDEEFEHLNWRMRMRIVMGMAYSLEYLHEQSAPLIHLNLTSSAVNLTEDYAAKIA 536

Query: 520 DLSFWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWA 579
           + S  N+I   E   TS  L +  S   ES +Y+FG++L E++TGR+P+   NG+LE WA
Sbjct: 537 ECSLQNKIVANERNCTSGHLLNTSSGGPESQIYSFGLVLLELMTGRIPHSAQNGTLEGWA 596

Query: 580 ADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI 639
             YL   +PL++ +DPTL+SF EEQLE +G+L++SC+ ++PE+RPTM+ I + LR ITGI
Sbjct: 597 IQYLKLDKPLKELIDPTLTSFQEEQLEQIGQLLRSCLHSNPEQRPTMKLITSRLRLITGI 656

Query: 640 TPDGAIPKLSPLWWAEIEILS 660
           TPD AIP+LSPLWWAE+EI S
Sbjct: 657 TPDEAIPRLSPLWWAELEIAS 677

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499209|ref|XP_003518434.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1-like [Glycine max]

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/674 (58%), Positives = 479/674 (71%), Gaps = 41/674 (6%)

Query: 1   MDQNWKFTR---LGVLF----VVLISQSLCLCWSLNDEGLALLRLRERVVRDPYGALTSW 53
           M +N K TR   L + F    V  + Q L LC SLN+EG ALL+LR+R+V DP+GAL++W
Sbjct: 1   MAKNRKLTRFKDLSIAFRFVAVFFLLQKLGLCCSLNEEGNALLKLRQRIVSDPFGALSNW 60

Query: 54  RSCDTENNPCSWFGVECSDGKVV-NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGI 112
              +   +PC+WFGVECSDG+VV  LNLKDLCL GTL PE+  L +IKSIILRNNSFSGI
Sbjct: 61  IDDEVSVDPCNWFGVECSDGRVVVALNLKDLCLGGTLGPELVKLVNIKSIILRNNSFSGI 120

Query: 113 IPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 172
           IPEGF ELEELEVLD G+N FSG LP DL  + SL ILLLDNNDF+   SPEI +L++LS
Sbjct: 121 IPEGFVELEELEVLDLGYNYFSGHLPADLRSDISLAILLLDNNDFLVGFSPEINELRMLS 180

Query: 173 ESQVDEGQLSSAAKKEQSCYERSIKWNGVLDEDTVQRRLLQINPF-RNLKGRILGIAPTS 231
           E QVDE +L++AAK   +C +R   WN  +D+    R LLQ     R  +G    +A   
Sbjct: 181 ECQVDENKLTNAAKMP-ACTKRVTTWN--IDQGKSTRGLLQQKAKPRTNQGHFYRVADPP 237

Query: 232 SPPPSSDAIPPASVGSSDDTKANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIP 291
                       S         + ++      ++P +  N + +P P+ TP         
Sbjct: 238 V----------KSSPPPPSASPSASAKPPGPKLAPHR-KNGSDSPPPHSTPG-------- 278

Query: 292 RPSSSQSHQKSGGSSSKHIAILGGVIGGAILLV-ATVGIYLCRCNKVSTVKPWATGLSGQ 350
             S + S  +S         IL GVIGGA+ L+ +++GIYLC+  KV+ V+PWATGLSGQ
Sbjct: 279 --SGTLSKTESNSPKVHTFPILPGVIGGAVFLIFSSIGIYLCK-TKVANVRPWATGLSGQ 335

Query: 351 LQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDW 410
           LQKAFVTG  KL+RS+LEAACEDFSNVIG+SPIGT+YKGTLS+GVEIAVA V V S+++W
Sbjct: 336 LQKAFVTGAQKLRRSDLEAACEDFSNVIGTSPIGTLYKGTLSSGVEIAVAFVPVTSSRNW 395

Query: 411 PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESE 470
            K LE QFR KIDTLSKVNHKNFVNLIG+CEEE+PFTR++VFEYAPNGTLFEH+HIKE+E
Sbjct: 396 SKTLEAQFRSKIDTLSKVNHKNFVNLIGYCEEEDPFTRVLVFEYAPNGTLFEHLHIKEAE 455

Query: 471 HLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA 530
           HLDWG RLR+A GMAYCL+HMHQL+PP+    LNSSAV+LT DYAAKLSDLSF N+I  A
Sbjct: 456 HLDWGTRLRVATGMAYCLQHMHQLDPPMTLIKLNSSAVYLTNDYAAKLSDLSFSNDITSA 515

Query: 531 EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDN-GSLEDWAADYLSGVQPL 589
           E  A        P A+ ESNVY+FGVLLFEMVTGRLPY V++  SLE+WA+ YL G QPL
Sbjct: 516 EARAI-----DMPIATPESNVYSFGVLLFEMVTGRLPYSVEHRDSLENWASHYLEGDQPL 570

Query: 590 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLS 649
            + VDP L S+ E+QLE +  LI SCV  DP++RPTM+D++  LREIT ITP+ A+PKLS
Sbjct: 571 IEMVDPILVSYQEDQLEQVAALITSCVHPDPQQRPTMKDVSERLREITKITPESAVPKLS 630

Query: 650 PLWWAEIEILSTEA 663
           PLWWAE+EI S EA
Sbjct: 631 PLWWAELEIASAEA 644

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569509|ref|XP_003552942.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45840-like [Glycine max]

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/695 (53%), Positives = 475/695 (68%), Gaps = 36/695 (5%)

Query: 1   MDQNWKFT---RLGVLFVVLISQSLCL-----CWSLNDEGLALLRLRERVVRDPYGALTS 52
           M++ W+F    +L  +FV ++S  L +     C +LN+EGLAL ++RERVVRDP GAL+S
Sbjct: 1   MEERWRFITWLKLFRVFVAVVSLFLFILEPIWCSTLNNEGLALQKMRERVVRDPLGALSS 60

Query: 53  WRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGI 112
           W S   E +PCSWFGVECS G VV+LNLKDLCL GTLA EI  L HIKSIILRNN F G 
Sbjct: 61  WNS-KGEIDPCSWFGVECSHGNVVSLNLKDLCLHGTLALEIGKLVHIKSIILRNNYFYGD 119

Query: 113 IPEGFGELEELEVLDFGHNNFSGPLP-NDLGINHSLTILLLDNNDFVGSLSPEIYKLQVL 171
           IP+   +LE+LEVLD G+NNFSG  P +DL    SLT LLLDNND + SL+PE+Y+L+  
Sbjct: 120 IPKEILQLEDLEVLDLGYNNFSGQFPFHDLATYPSLTTLLLDNNDHLASLTPEVYELKTF 179

Query: 172 SESQVDEGQLSSAAKKEQSCYERSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAPTS 231
           SE  V E QL+ A  +E +C   +  W+     D   RR L        +G       + 
Sbjct: 180 SELHVAEEQLTGATTRE-ACVRITNNWHIGTHGDIASRRALLQEANGEKRGDDDTETLSP 238

Query: 232 SPPPSSDAIPPASVGSSDDTKANET--------------------SSDRNDSVSP-PKLS 270
           SP PS+ +        S+    +                      S   +  V+P P LS
Sbjct: 239 SPFPSTLSPFSEPFSPSESPSDSPISSPEVSPSPSPSLSNFFFTLSPSPSPEVAPTPDLS 298

Query: 271 NPAPAPAPNQTPTPTPSIPIPRPSSSQSHQKSGGSSSK-HIAILGGVIGGA--ILLVATV 327
            PA  P    TP  +  + +P P+SS +   +  S+ K H AI+   +GG   ++LV+ +
Sbjct: 299 PPANPPMVVSTPPQSNWVSMPSPASSSNQGNANSSNPKQHTAIIWSTVGGFSFLILVSAI 358

Query: 328 GIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVY 387
                R NKV TVKPW TGLSGQLQKAFV+GVP LKR+ELE ACEDFSN+IGS P GT+Y
Sbjct: 359 AFVCFRSNKVVTVKPWTTGLSGQLQKAFVSGVPSLKRTELEVACEDFSNIIGSLPEGTIY 418

Query: 388 KGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT 447
           KGTLS+GVEI VAS +V S+++W KN+E QFRKKI+ LS+VNHKNFVNLIG+CEE +PFT
Sbjct: 419 KGTLSSGVEIGVASSAVTSSQNWSKNMETQFRKKIEMLSRVNHKNFVNLIGYCEENKPFT 478

Query: 448 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSA 507
           RMMVFEYAPNGTLFEH+HI+E+E LDWGMR+RIAMG+AYCLEH+HQL PPIA+  + SS+
Sbjct: 479 RMMVFEYAPNGTLFEHLHIREAEQLDWGMRMRIAMGIAYCLEHLHQLTPPIAYRNILSSS 538

Query: 508 VHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLP 567
           ++LTEDYAAKLSDLSFW +I   +  + + +L   PSA +++NVY+FGVLLFE++TGR+P
Sbjct: 539 IYLTEDYAAKLSDLSFWTDIVSTKKGSEAPQLLETPSAYIKANVYSFGVLLFELITGRIP 598

Query: 568 YLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMR 627
           + V+NG  EDWA +Y+ G QPL+  VD +L+S    ++E   E++KSCV  DPEKRPTMR
Sbjct: 599 FAVENGLFEDWAEEYMKG-QPLRDLVDTSLNSLQANEIEKWEEVVKSCVHPDPEKRPTMR 657

Query: 628 DIAAILREITGITPDGAIPKLSPLWWAEIEILSTE 662
           ++ A L+EIT + PDGA PK SPLWWAEIEI+S++
Sbjct: 658 EVTAKLKEITAMGPDGATPKASPLWWAEIEIMSSD 692

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441925|ref|XP_003591240.1| Ser-thr protein kinase [Medicago truncatula] gi|355480288|gb|AES61491.1| Ser-thr protein kinase [Medicago truncatula]

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/657 (55%), Positives = 466/657 (70%), Gaps = 53/657 (8%)

Query: 12  VLFVVLISQSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECS 71
           ++  + ++ +LC C+SLN+EG +LL+L++R++ DP+GAL++W   +   +PC WFGVECS
Sbjct: 15  IVCFLFLNLNLC-CYSLNEEGNSLLKLKKRIISDPFGALSNWIDDEVSVDPCDWFGVECS 73

Query: 72  DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 131
           D  VV LNLKDLCLEGTLAPE+ +L HIKSIILRNNSF G IPE   +L++LE+LD G+N
Sbjct: 74  DRNVVVLNLKDLCLEGTLAPELVNLVHIKSIILRNNSFYGTIPEEIVDLKQLEILDLGYN 133

Query: 132 NFSGPLPNDLGIN-HSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQS 190
           NFSG L  + G N  SL ILLLDNN+ +   SP+I +L++LSE QVD+ QL +A K   S
Sbjct: 134 NFSGHLDANFGHNITSLAILLLDNNELLIGFSPKINELKMLSEYQVDKNQLINADKM-SS 192

Query: 191 CYERSIKWNGVLDEDTVQRRLLQIN-----PFRNLKGRILGIAPTSSPPPSSDAIPPASV 245
           C ERSI W+  + E+   R L + +     P++    R       +SP   S     +S 
Sbjct: 193 CSERSITWH--VHENEGPRSLQEYHQHHRRPYQYRHNR-------TSPLYRSFPSHSSSP 243

Query: 246 GSSDDTKANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSHQKSGGS 305
            S    +    S ++N S S P LS        NQ P                       
Sbjct: 244 SSDSPIQNASESPNKNASDSLPPLS------KKNQVPI---------------------- 275

Query: 306 SSKHIAILGGVIGGAILLV-ATVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKR 364
                   G +IGGA+ LV +++GIYLC+ NK++ V+PW+TG+SGQLQKA VTGVPKL R
Sbjct: 276 ------FAGVIIGGAVFLVISSIGIYLCKTNKLAIVRPWSTGISGQLQKALVTGVPKLNR 329

Query: 365 SELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDT 424
           S+LEAACEDFSNVIG+SPIGT+YKGTLS+GVEIAVASVSV  +K W + LE QFRKKIDT
Sbjct: 330 SDLEAACEDFSNVIGNSPIGTLYKGTLSSGVEIAVASVSVTLSKSWTRTLETQFRKKIDT 389

Query: 425 LSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGM 484
           LSKVNHKNFVNLIG+CEEEEPFTRM+VFEYAPNGTLFEH+HIKE EHL+WG RLRIAMGM
Sbjct: 390 LSKVNHKNFVNLIGYCEEEEPFTRMLVFEYAPNGTLFEHLHIKEGEHLNWGPRLRIAMGM 449

Query: 485 AYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKK-LSSAP 543
           AYCL+HMH L+PP+    LNSS+VHLT+D+AAK SDLSF NEI  +E  +  +K +    
Sbjct: 450 AYCLQHMHGLDPPVVLINLNSSSVHLTDDHAAKTSDLSFSNEIDSSEKKSDGRKHIDMMQ 509

Query: 544 SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 603
           SAS  SNVY+FGVLLFE+VTGR+PY VDN S E+WA+ YL   +PL++ VDPTL+S+ E+
Sbjct: 510 SASPSSNVYSFGVLLFEIVTGRIPYSVDNSSHENWASHYLKWDKPLKEMVDPTLASYQED 569

Query: 604 QLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIEILS 660
           Q+E + ELI+ CV  D +KRPTM++++  LREIT ++P+  +PKLSPLWWAEIEI S
Sbjct: 570 QVEQVAELIRVCVDPDSDKRPTMKEVSEKLREITKMSPEIVVPKLSPLWWAEIEISS 626

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523573|ref|XP_004168798.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1-like [Cucumis sativus]

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/656 (57%), Positives = 464/656 (70%), Gaps = 30/656 (4%)

Query: 30  DEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTL 89
           D GLALLR+R+ V  DP+GAL +W   D E + CSWFGVECSDGKVV LNL+DLCL GTL
Sbjct: 7   DAGLALLRIRDAVGSDPFGALANWNDKDGEFDHCSWFGVECSDGKVVILNLRDLCLGGTL 66

Query: 90  APEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTI 149
           APE+    +IKSIILRNNSF G IP+  G+L ELEVLD G NNFSGP P DLG N SLT 
Sbjct: 67  APEMGKFPYIKSIILRNNSFHGGIPQEIGDLLELEVLDLGFNNFSGPFPLDLGNNLSLTT 126

Query: 150 LLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIKWN--GVLDEDTV 207
           LLLD+N+F+ S++PE Y+L +LSE+ +DE QLSS   K  SC   +++WN     D D  
Sbjct: 127 LLLDHNEFITSITPEAYELNLLSETLMDEEQLSSIQGK-SSCTRETVRWNFGQFQDADYQ 185

Query: 208 QRRLLQI-NPFRNLKGRILGIAPTSSPPPSSDAI-----------------PPASVGSSD 249
           +RRL  + +P R+          +S  P S  A                  PPA + S  
Sbjct: 186 RRRLGGVQSPKRSFFSLPPSSFASSPSPLSPSAPPFSPAPSPRSPSASPTEPPAPLLSLA 245

Query: 250 DTKANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSH--QKSGGSSS 307
              +   +  R     PP ++    AP    TP  +  +P PR S+   +   +S  + +
Sbjct: 246 PAPSLHLNPAR-----PPAVAPTLHAPVHVLTPPHSRGVP-PRSSAPSPNLIGRSNKNKN 299

Query: 308 KHIAILGGVIGGAI-LLVATVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSE 366
             + IL G++ G++ LL ATVGI + R +KV TVKPWATGLSGQLQKAFVTGVPKLKRSE
Sbjct: 300 HKVLILTGIVAGSLFLLFATVGILMFRSSKVVTVKPWATGLSGQLQKAFVTGVPKLKRSE 359

Query: 367 LEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLS 426
           LEAACEDFSN+IGS    TVYKGTLS+GVEIAV S +V S  DW K  E QFRKKI+TLS
Sbjct: 360 LEAACEDFSNIIGSFSDITVYKGTLSSGVEIAVTSTAVTSNADWSKTKEEQFRKKIETLS 419

Query: 427 KVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAY 486
           +VNHKNFV+LIGFCEE +PFTRMMVFEYAPNGTLFEH+HIKE+EHLDW MRLRIAMG+AY
Sbjct: 420 RVNHKNFVSLIGFCEEAQPFTRMMVFEYAPNGTLFEHLHIKEAEHLDWEMRLRIAMGVAY 479

Query: 487 CLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSAS 546
           CL+HMHQL+ P+ H +L SS+V+LTEDYAAKLSD S+W+E   A++ + + +L     A 
Sbjct: 480 CLDHMHQLDLPVVHRHLCSSSVYLTEDYAAKLSDFSYWSEATAAKLGSATVELLETSPAD 539

Query: 547 LESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE 606
           LESNVY+FGV+L EM+TGRLP+ VD+GSL DWA+D+L G Q L+  VDP LSSF EEQLE
Sbjct: 540 LESNVYSFGVILLEMITGRLPFSVDDGSLADWASDFLKGEQLLKDIVDPILSSFKEEQLE 599

Query: 607 TLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIEILSTE 662
            L ++IK CV+ +P++RPTM +IA  L+EIT + P GA PKLSPLWWAE+EILST+
Sbjct: 600 NLSQVIKMCVKPEPKQRPTMPEIALRLKEITALEPAGATPKLSPLWWAELEILSTD 655

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498966|ref|XP_003518316.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45840-like [Glycine max]

 Score =  636 bits (1640), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 346/670 (51%), Positives = 449/670 (67%), Gaps = 28/670 (4%)

Query: 19  SQSLCLCWSL-NDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSDGKVVN 77
           SQ   LC +L ++EGLALL LRERVV DP GAL+SW   D + +PCSWFGVEC  G VV 
Sbjct: 19  SQKQSLCSTLKSEEGLALLALRERVVSDPQGALSSWSGEDGDIDPCSWFGVECFHGYVVT 78

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 137
           LNLKDLCLEGTLAPEI  LTHIKSIILRNNSF G IP+    LE+LEVLD G+NNFSG L
Sbjct: 79  LNLKDLCLEGTLAPEIGKLTHIKSIILRNNSFFGEIPKEILHLEKLEVLDLGYNNFSGLL 138

Query: 138 PNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQ---SCYER 194
           P D G   SLT LLLDNN ++ +L+PE+YKL++ SE   +E QL+ A  +E     C+ R
Sbjct: 139 PFDHGSMPSLTTLLLDNNYYLTNLTPELYKLKMNSEFHANEEQLTGATTRELFVCRCHLR 198

Query: 195 SIKWNGVLDEDTVQRRLLQINPFRN---LKGRILGIAPTSSPPPSSDAIPP--------- 242
            I  +G   + + +R+LL++    N   ++G +       S    + ++PP         
Sbjct: 199 HIGQHG---DRSYRRQLLKVANDANTPRIQGNVNRGTLKQSASHFAFSLPPDFEPFSSSP 255

Query: 243 --------ASVGSSDDTKANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPS 294
                    +V  S       + S    + SP  L  P  +   N  P      P P P 
Sbjct: 256 SESPSYSPGAVPLSYSPSPLPSPSSIFFTPSPVVLPTPGISSPANTLPPEFNWAPSPSPF 315

Query: 295 SSQSHQKSGGSSSKHIAILGGVIGGAILLVATVGIYLC-RCNKVSTVKPWATGLSGQLQK 353
           S+Q +  S       + I   V G ++L++ +  I+ C +  KV  VKPW+TGLSGQLQK
Sbjct: 316 SNQGNTDSSNQIHHSVIIWFAVGGFSLLILVSAIIFACFQSRKVVAVKPWSTGLSGQLQK 375

Query: 354 AFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKN 413
           AFV GVP LKR E+EAA E FSN+IGS P GTVYKGTLS+GVEIAVAS +V +AK+W K+
Sbjct: 376 AFVKGVPSLKRGEIEAASEYFSNIIGSLPDGTVYKGTLSSGVEIAVASSAVTTAKNWSKS 435

Query: 414 LEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD 473
           +E QFRKKI TLS+VNHKNFVNLIG+CEE +PF+RMMV EYAPNGTLFEH+HI+E E L+
Sbjct: 436 MEAQFRKKIATLSRVNHKNFVNLIGYCEENKPFSRMMVLEYAPNGTLFEHLHIREGEELN 495

Query: 474 WGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMA 533
           W MR+RIAMG+AYCLE+MH+L PPIAH  L SS ++LTEDYAAK+SDLS WN++   +  
Sbjct: 496 WTMRMRIAMGIAYCLEYMHELKPPIAHRNLQSSFIYLTEDYAAKISDLSLWNDMCDTKNG 555

Query: 534 ATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFV 593
           + + +     SA  + NVY+FG++LFE++TGR+P   +N  L DWAA+Y+   + L+  V
Sbjct: 556 SATTQFLETSSADTKDNVYSFGIVLFELITGRIPLAGNNELLADWAAEYVRWGKSLRDVV 615

Query: 594 DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWW 653
           DP L S  EE++E   E+I++CV+ DPEKRPTM+++ + L+EIT + PDGA PK SPLWW
Sbjct: 616 DPRLKSLQEEEIEEWSEVIRNCVQPDPEKRPTMKEVTSRLKEITAMGPDGANPKASPLWW 675

Query: 654 AEIEILSTEA 663
           AE+ I ST++
Sbjct: 676 AEMAITSTDS 685

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	664
TAIR|locus:2124102	678	MRH1 "morphogenesis of root ha	0.503	0.492	0.529	9.4e-122
TAIR|locus:2078436	499	AT3G56050 [Arabidopsis thalian	0.5	0.665	0.587	1.1e-110
TAIR|locus:2063146	489	AT2G40270 [Arabidopsis thalian	0.5	0.678	0.588	8e-110
TAIR|locus:2182915	553	AT5G07150 [Arabidopsis thalian	0.322	0.386	0.553	8.2e-110
TAIR|locus:2171233	484	AT5G58540 [Arabidopsis thalian	0.483	0.663	0.5	2.4e-83
TAIR|locus:2163056	664	AT5G41180 [Arabidopsis thalian	0.438	0.438	0.339	7.7e-66
TAIR|locus:2036636	632	NIK3 "NSP-interacting kinase 3	0.397	0.417	0.282	2.5e-40
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.402	0.242	0.274	1.9e-36
TAIR|locus:2020417	1101	AT1G17230 [Arabidopsis thalian	0.396	0.238	0.301	2.4e-36
TAIR|locus:2156992	946	AT5G49770 [Arabidopsis thalian	0.427	0.300	0.289	1.5e-35

TAIR|locus:2124102 MRH1 "morphogenesis of root hair 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 984 (351.4 bits), Expect = 9.4e-122, Sum P(2) = 9.4e-122
 Identities = 179/338 (52%), Positives = 244/338 (72%)

Query:   329 IYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYK 388
             I+ CR   V ++ PW TGLSGQLQKAFVTGVPKL RSELE ACEDFSN+I +    TVYK
Sbjct:   341 IFFCRKRAVKSIGPWKTGLSGQLQKAFVTGVPKLNRSELETACEDFSNIIETFDGYTVYK 400

Query:   389 GTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR 448
             GTLS+GVEI          K+W + +E+ +R+KIDTLS++NHKNFVNLIG+CEE++PF R
Sbjct:   401 GTLSSGVEIAVASTAIAESKEWTRAMEMAYRRKIDTLSRINHKNFVNLIGYCEEDDPFNR 460

Query:   449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAV 508
             MMVFEYAPNGTLFEH+H KE+EHLDW  R+RI MG AYCL+HMH +NPP+AH   NSS +
Sbjct:   461 MMVFEYAPNGTLFEHLHDKETEHLDWSARMRIIMGTAYCLQHMHGMNPPMAHTDFNSSEI 520

Query:   509 HLTEDYAAKLSDLSFWNEIAM---AEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGR 565
             +LT+DYAAK+S++ F  E  +     +                 NV++FGVL+ E+++G+
Sbjct:   521 YLTDDYAAKVSEIPFNLEARLNPKKHVSGDLEQTSLLLPPEPEANVHSFGVLMLEIISGK 580

Query:   566 LPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT 625
             L +  + GS+E WA+ YL     L + +DP+L +F EE+LE + ++I+ C++ +  +RP+
Sbjct:   581 LSFSDEYGSIEQWASKYLEK-DDLGEMIDPSLKTFKEEELEVICDVIRECLKTEQRQRPS 639

Query:   626 MRDIAAILREITGITPDGAIPKLSPLWWAEIEILSTEA 663
             M+D+A  L+++  ITP+ A P+ SPLWWAE+EILS+EA
Sbjct:   640 MKDVAEQLKQVINITPEKATPRSSPLWWAELEILSSEA 677

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0048765 "root hair cell differentiation" evidence=RCA;IMP

GO:0007155 "cell adhesion" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2078436 AT3G56050 [Arabidopsis thaliana (taxid:3702)]

 Score = 1063 (379.3 bits), Expect = 1.1e-110, Sum P(2) = 1.1e-110
 Identities = 198/337 (58%), Positives = 253/337 (75%)

Query:   328 GIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVY 387
             G++  +     +V PW TGLSGQLQK F+TGVPKLKRSE+EAACEDFSNVIGS PIGT++
Sbjct:   164 GVFFFKSKAGKSVNPWRTGLSGQLQKVFITGVPKLKRSEIEAACEDFSNVIGSCPIGTLF 223

Query:   388 KGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT 447
             KGTLS+GVEI          K+W  N+E+QFRKKI+ LSK+NHKNFVNL+G+CEEEEPFT
Sbjct:   224 KGTLSSGVEIAVASVATASAKEWTNNIEMQFRKKIEMLSKINHKNFVNLLGYCEEEEPFT 283

Query:   448 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSA 507
             R++VFEYA NGT+FEH+H KESEHLDW MRLRIAMG+AYCL+HMH L PPI H+ L SS+
Sbjct:   284 RILVFEYASNGTVFEHLHYKESEHLDWVMRLRIAMGIAYCLDHMHGLKPPIVHSNLLSSS 343

Query:   508 VHLTEDYAAKLSDLSFW--NEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGR 565
             V LTEDYA K++D +F      +  E                  NV++FG+LLFE++TG+
Sbjct:   344 VQLTEDYAVKIADFNFGYLKGPSETESSTNALIDTNISETTQEDNVHSFGLLLFELMTGK 403

Query:   566 LPYLVDNG-SLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRP 624
             LP  V  G S++   A +L G + L++ VDPT+ SFDE+ +E +GE+IKSC+RAD ++RP
Sbjct:   404 LPESVQKGDSIDTGLAVFLRG-KTLREMVDPTIESFDEK-IENIGEVIKSCIRADAKQRP 461

Query:   625 TMRDIAAILREITGITPDGAIPKLSPLWWAEIEILST 661
              M+++   LREITG++PD  IPKLSPLWWAE+E+LST
Sbjct:   462 IMKEVTGRLREITGLSPDDTIPKLSPLWWAELEVLST 498

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2063146 AT2G40270 [Arabidopsis thaliana (taxid:3702)]

 Score = 1067 (380.7 bits), Expect = 8.0e-110, Sum P(2) = 8.0e-110
 Identities = 197/335 (58%), Positives = 249/335 (74%)

Query:   328 GIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVY 387
             G+Y        TV PW TGLSGQLQK FVTG+P LKRSE+EAACEDFSNVIGS PIG ++
Sbjct:   156 GLYFFTSKAGKTVNPWRTGLSGQLQKVFVTGIPVLKRSEIEAACEDFSNVIGSCPIGKLF 215

Query:   388 KGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT 447
             KGTLS+GVEI          KDW  + E+ FRKKI+ LSK+NHKNF NL+G+CEE+EPFT
Sbjct:   216 KGTLSSGVEIAVASFATTTAKDWKDSTEIHFRKKIEMLSKINHKNFANLLGYCEEKEPFT 275

Query:   448 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSA 507
             R+++FEYAPNG+LFEH+H KESEHLDWGMRLRIAMG+AYCL+HMHQLNPPIAH  L SS+
Sbjct:   276 RILIFEYAPNGSLFEHLHYKESEHLDWGMRLRIAMGLAYCLDHMHQLNPPIAHTNLVSSS 335

Query:   508 VHLTEDYAAKLSDLSFWNEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLP 567
             + LTEDYA K+SD SF +      +                 N+Y+FG+LLFEM+TG+L 
Sbjct:   336 LQLTEDYAVKVSDFSFGSSETETNINNNTVIDTHISALNPEDNIYSFGLLLFEMITGKLI 395

Query:   568 YLVDN-GSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTM 626
               V+   S++    D+L G + L + VDPTL S+D + +E +GE+IKSC+R DP++RPTM
Sbjct:   396 ESVNKPDSVDSSLVDFLRG-ETLAKMVDPTLESYDAK-IENIGEVIKSCLRTDPKERPTM 453

Query:   627 RDIAAILREITGITPDGAIPKLSPLWWAEIEILST 661
             +++   LREITG++P+ A PKLSPLWWAE+E+LST
Sbjct:   454 QEVTGWLREITGLSPNDATPKLSPLWWAELEVLST 488

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2182915 AT5G07150 [Arabidopsis thaliana (taxid:3702)]

 Score = 650 (233.9 bits), Expect = 8.2e-110, Sum P(3) = 8.2e-110
 Identities = 130/235 (55%), Positives = 164/235 (69%)

Query:   336 KVSTVKPWA-TGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGS-SPIGTVYKGTLSN 393
             KV  +KPW  TG SGQLQ    TGVPKLK +ELE ACEDFSN+IGS S   T+YKGTLS 
Sbjct:   257 KVKLIKPWGETGSSGQLQDVVTTGVPKLKLAELETACEDFSNIIGSTSSDATIYKGTLST 316

Query:   394 GVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE 453
             G EI          +DW ++ E QF++K   LS+VNHKNF+N+IG+C E+EPF RM+VFE
Sbjct:   317 GSEIAVLAVASGSLQDWSEDHETQFQEK--RLSQVNHKNFLNVIGYCHEDEPFNRMLVFE 374

Query:   454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNP-PIAHNYLNSSAVHLTE 512
             YAPNG+LFEH+H +++EHLDW MRLRI MG+AYC+EHMH LNP PI+H  LNSS+V+L  
Sbjct:   375 YAPNGSLFEHLHDQDAEHLDWPMRLRIVMGIAYCMEHMHNLNPKPISHTNLNSSSVYLAT 434

Query:   513 DYAAKLSDLSFWNEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLP 567
             DYAAK+SD +F +   +  M                 NV +FG LL E++TG++P
Sbjct:   435 DYAAKVSDFTFLSSTPLDPMT----------------NVSSFGALLQEIITGKIP 473

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2171233 AT5G58540 [Arabidopsis thaliana (taxid:3702)]

 Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
 Identities = 167/334 (50%), Positives = 219/334 (65%)

Query:   329 IYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYK 388
             I+L    K+  +KPW    SGQL+   +T VP+L+ SEL+AACEDFSNVIGS   GT+YK
Sbjct:   162 IFLILTRKIP-IKPWTN--SGQLRDDLITDVPRLQLSELQAACEDFSNVIGSFSDGTIYK 218

Query:   389 GTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR 448
             GTLS G EI           DW   ++ Q  +K+  LSKV+HKNF+N+IG+C EEEPF R
Sbjct:   219 GTLSTGAEIAVVSIVAGSRSDWSTTMDTQLLQKMHNLSKVDHKNFLNVIGYCLEEEPFKR 278

Query:   449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAV 508
             M+VFEYAPNG+L EH+H +  EHLDW  RLRI MG+AYCLEHMH LNPPI  + L+SS+V
Sbjct:   279 MLVFEYAPNGSLSEHLHSQYVEHLDWPTRLRIVMGIAYCLEHMHNLNPPILLSNLDSSSV 338

Query:   509 HLTEDYAAKLSDLSFWNEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPY 568
             +LTED AAK+SD S  N I  ++                  NV+NFG +LFE+++G+LP 
Sbjct:   339 YLTEDNAAKVSDFSVINSIFPSKEGSSSKNLLEPSLLDPHTNVFNFGAVLFEIISGKLP- 397

Query:   569 LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRD 628
               D  S+       L   +P +  VDPTL +F E  +E L E+++ C+    ++RPTMR+
Sbjct:   398 --DPDSM-------LLEPKPTRDIVDPTLKTFQENVVERLLEVVRQCLNPYSDQRPTMRE 448

Query:   629 IAAILREITGITPDGAIPKLSPLWWAEIEILSTE 662
             +   LREITGI  D A+P+LSP WW E+EI+STE
Sbjct:   449 VVVKLREITGIEADAAMPRLSPRWWTELEIISTE 482

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2163056 AT5G41180 [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 7.7e-66, Sum P(2) = 7.7e-66
 Identities = 106/312 (33%), Positives = 168/312 (53%)

Query:   331 LCRCNKVSTVKPWATGLSGQ------LQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIG 384
             LC+  + S + PW    S +      +    +  V +  R ELE ACEDFSN+I SS   
Sbjct:   302 LCKIKR-SLIVPWKKSASEKEKFTVYVDSEMLKDVSRYTRQELEVACEDFSNIIDSSAES 360

Query:   385 TVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE 444
              +YKGT+  G EI          ++W   LE+ F++++  L+++NH+N   L+G+C+E  
Sbjct:   361 QIYKGTIKGGTEIAVISLCVKE-ENWTGYLELNFQREVAALARLNHENAGKLLGYCKEST 419

Query:   445 PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMH-QLNPPIAHNYL 503
             PFTRM+VFEYA NGTL++H+H  +   + W  R++I +G+A  L+++H +L+PP   + L
Sbjct:   420 PFTRMLVFEYASNGTLYDHLHYADGSLVSWAKRMKIVIGIARGLKYLHTELHPPFTVSEL 479

Query:   504 NSSAVHLTEDYAAKLSDLSFWNEIAM-AEMXXXXX----------XXXXXXXXXXXXNVY 552
             +S+AV+LTED+  KL D   W  I + +E                            N+Y
Sbjct:   480 SSTAVYLTEDFTPKLVDFECWKIIQVRSEKNLKNICNEGAICVLPNAMEHRDMDLQGNIY 539

Query:   553 NFGVLLFEMVTGRLPYLVDNGSLEDWAADY-LSGVQPLQQFVDPTLSSFDEEQLETLGEL 611
             +FG+LL E+V+GR  Y  D G L +W  +  L     +   VDP L  F +++LE + E+
Sbjct:   540 SFGILLLEIVSGRPSYCQDRGCLVEWVREKNLGAPDVMASLVDPELKHFKQKELEAVCEV 599

Query:   612 IKSCVRADPEKR 623
                C+  D  ++
Sbjct:   600 ASQCLNLDQNEK 611

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2036636 NIK3 "NSP-interacting kinase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 2.5e-40, Sum P(2) = 2.5e-40
 Identities = 84/297 (28%), Positives = 141/297 (47%)

Query:   362 LKR---SELEAACEDFS--NVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWP-KNLE 415
             LKR    EL +A   F+  N++G    G VYKG L++G  +          KD      E
Sbjct:   286 LKRYTFKELRSATNHFNSKNILGRGGYGIVYKGHLNDGTLVAVKRL-----KDCNIAGGE 340

Query:   416 VQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHLD 473
             VQF+ +++T+S   H+N + L GFC   +   R++V+ Y PNG++   +  +I+    LD
Sbjct:   341 VQFQTEVETISLALHRNLLRLRGFCSSNQE--RILVYPYMPNGSVASRLKDNIRGEPALD 398

Query:   474 WGMRLRIAMGMAYCLEHMH-QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW-------N 525
             W  R +IA+G A  L ++H Q +P I H  + ++ + L ED+ A + D           +
Sbjct:   399 WSRRKKIAVGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDS 458

Query:   526 EIAMA---EMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGR--LPY---LVDNGSLED 577
              +  A    +                 +V+ FG+LL E++TG+  L +       G + D
Sbjct:   459 HVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDFGRSAHQKGVMLD 518

Query:   578 WAADYLSGVQPLQQFVDPTLSS-FDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 633
             W    L     L+Q +D  L+  FD  +LE + ++   C + +P  RP M ++  +L
Sbjct:   519 WVKK-LHQEGKLKQLIDKDLNDKFDRVELEEIVQVALLCTQFNPSHRPKMSEVMKML 574

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.9e-36, Sum P(2) = 1.9e-36
 Identities = 79/288 (27%), Positives = 129/288 (44%)

Query:   366 ELEAACEDF--SNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKID 423
             +L AA ++F  S V+G    GTVYK  L  G  +               N++  FR +I 
Sbjct:   796 DLVAATDNFDESFVVGRGACGTVYKAVLPAGYTLAVKKLASNHEGGNNNNVDNSFRAEIL 855

Query:   424 TLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMG 483
             TL  + H+N V L GFC  +   + ++++EY P G+L E +H   S +LDW  R +IA+G
Sbjct:   856 TLGNIRHRNIVKLHGFCNHQG--SNLLLYEYMPKGSLGEILH-DPSCNLDWSKRFKIALG 912

Query:   484 MAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMXXXXXXXXX- 541
              A  L ++H    P I H  + S+ + L + + A + D      I M             
Sbjct:   913 AAQGLAYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPHSKSMSAIAGSY 972

Query:   542 ---------XXXXXXXXNVYNFGVLLFEMVTGRLPYL-VDNGS-LEDWAADYLSGVQPLQ 590
                              ++Y++GV+L E++TG+ P   +D G  + +W   Y+       
Sbjct:   973 GYIAPEYAYTMKVTEKSDIYSYGVVLLELLTGKAPVQPIDQGGDVVNWVRSYIRRDALSS 1032

Query:   591 QFVDPTLSSFDEEQLETLGELIKS---CVRADPEKRPTMRDIAAILRE 635
               +D  L+  DE  +  +  ++K    C    P  RP+MR +  +L E
Sbjct:  1033 GVLDARLTLEDERIVSHMLTVLKIALLCTSVSPVARPSMRQVVLMLIE 1080

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2020417 AT1G17230 [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 2.4e-36, Sum P(2) = 2.4e-36
 Identities = 87/289 (30%), Positives = 134/289 (46%)

Query:   370 ACEDFSN--VIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSK 427
             A  +FS   V+G    GTVYK  +S G E+          +    + +  FR +I TL K
Sbjct:   795 ATRNFSEDVVLGRGACGTVYKAEMSGG-EVIAVKKLNSRGEG--ASSDNSFRAEISTLGK 851

Query:   428 VNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHL-DWGMRLRIAMGMA- 485
             + H+N V L GFC  +   + ++++EY   G+L E +   E   L DW  R RIA+G A 
Sbjct:   852 IRHRNIVKLYGFCYHQN--SNLLLYEYMSKGSLGEQLQRGEKNCLLDWNARYRIALGAAE 909

Query:   486 -YCLEHMHQLNPPIAHNYLNSSAVHLTE-------DYA-AKLSDLSFWNEI-AMA-EMXX 534
               C  H H   P I H  + S+ + L E       D+  AKL DLS+   + A+A     
Sbjct:   910 GLCYLH-HDCRPQIVHRDIKSNNILLDERFQAHVGDFGLAKLIDLSYSKSMSAVAGSYGY 968

Query:   535 XXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPY--LVDNGSLEDWAADYLSGVQPLQQF 592
                            ++Y+FGV+L E++TG+ P   L   G L +W    +  + P  + 
Sbjct:   969 IAPEYAYTMKVTEKCDIYSFGVVLLELITGKPPVQPLEQGGDLVNWVRRSIRNMIPTIEM 1028

Query:   593 VDPTLSSFDEEQLETLGELIKS---CVRADPEKRPTMRDIAAILREITG 638
              D  L + D+  +  +  ++K    C    P  RPTMR++ A++ E  G
Sbjct:  1029 FDARLDTNDKRTVHEMSLVLKIALFCTSNSPASRPTMREVVAMITEARG 1077

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2156992 AT5G49770 [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
 Identities = 91/314 (28%), Positives = 147/314 (46%)

Query:   343 WATGLSGQLQKAFVTGVPKLKRSELEAACEDFS--NVIGSSPIGTVYKGTLSNGVEIXXX 400
             W  G   ++    + G       EL     +FS  N +G    G VYKGTL NG  I   
Sbjct:   604 WDAG-KNEMDAPQLMGTKAFTFEELSKCTNNFSDANDVGGGGYGQVYKGTLPNGQVIAIK 662

Query:   401 XXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTL 460
                    +        +F+ +I+ LS+V+HKN V L+GFC +++   +M+V+EY PNG+L
Sbjct:   663 RAQQGSMQG-----AFEFKTEIELLSRVHHKNVVKLLGFCFDQKE--QMLVYEYIPNGSL 715

Query:   461 FEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLTEDYAAKLS 519
              + +  K    LDW  RL+IA+G    L ++H+L +PPI H  + S+ + L E   AK++
Sbjct:   716 RDGLSGKNGVKLDWTRRLKIALGSGKGLAYLHELADPPIIHRDVKSNNILLDEHLTAKVA 775

Query:   520 DLSFWNEIAMAE-----------MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPY 568
             D      +   E           M                 +VY FGV++ E++TG+ P 
Sbjct:   776 DFGLSKLVGDPEKAHVTTQVKGTMGYLDPEYYMTNQLTEKSDVYGFGVVMLELLTGKSP- 834

Query:   569 LVDNGS--LEDWAA--DYLSGVQPLQQFVDPTL--SSFDEEQLETLGELIKSCVRADPEK 622
              +D GS  +++     D    +  LQ+ +D T+  +S + +  E   ++   CV  +   
Sbjct:   835 -IDRGSYVVKEVKKKMDKSRNLYDLQELLDTTIIQNSGNLKGFEKYVDVALQCVEPEGVN 893

Query:   623 RPTMRDIAAILREI 636
             RPTM ++   L  I
Sbjct:   894 RPTMSEVVQELESI 907

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
C0LGQ4	MRH1_ARATH	2, ., 7, ., 1, 1, ., 1	0.4152	0.9367	0.9174	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	664
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	5e-28
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	4e-26
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	8e-26
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	7e-25
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	7e-24
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	2e-20
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	7e-20
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	2e-16
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	3e-16
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	4e-16
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	2e-15
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	4e-15
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	1e-14
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	3e-14
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	4e-14
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	6e-14
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	3e-13
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	4e-13
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	5e-13
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	7e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-12
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	1e-12
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	2e-12
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	3e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-12
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	5e-12
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	6e-12
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	8e-12
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	1e-11
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	1e-11
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	2e-11
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	5e-11
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	5e-11
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	6e-11
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	7e-11
cd05042	269	cd05042, PTKc_Aatyk, Catalytic domain of the Prote	2e-10
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	2e-10
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	2e-10
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	3e-10
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	4e-10
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	5e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-10
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	7e-10
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	8e-10
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	2e-09
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	2e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-09
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	4e-09
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	4e-09
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	7e-09
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	7e-09
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	8e-09
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	1e-08
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	1e-08
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	2e-08
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	2e-08
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	2e-08
PHA02988	283	PHA02988, PHA02988, hypothetical protein; Provisio	2e-08
cd05091	283	cd05091, PTKc_Ror2, Catalytic domain of the Protei	3e-08
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	3e-08
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	3e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-08
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	7e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-08
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	8e-08
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	9e-08
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	1e-07
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	2e-07
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	2e-07
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	2e-07
cd05116	257	cd05116, PTKc_Syk, Catalytic domain of the Protein	2e-07
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	3e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-07
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	6e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-06
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	2e-06
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	2e-06
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	3e-06
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	4e-06
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	4e-06
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	5e-06
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	7e-06
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	9e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-05
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	2e-05
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	2e-05
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	3e-05
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	3e-05
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	3e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-05
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	4e-05
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	4e-05
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	4e-05
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	4e-05
cd05037	259	cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) dom	5e-05
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	6e-05
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	6e-05
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	8e-05
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	8e-05
cd05064	266	cd05064, PTKc_EphR_A10, Catalytic domain of the Pr	9e-05
cd05078	258	cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat	1e-04
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	1e-04
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	1e-04
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	1e-04
cd05086	268	cd05086, PTKc_Aatyk2, Catalytic domain of the Prot	1e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	2e-04
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	2e-04
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	2e-04
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	3e-04
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	3e-04
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	3e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-04
cd05095	296	cd05095, PTKc_DDR2, Catalytic domain of the Protei	4e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	0.001
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	0.001
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	0.001
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	0.002
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	0.002
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	0.002
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	0.002
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	0.002
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	0.003
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	0.003
pfam04652	315	pfam04652, DUF605, Vta1 like	0.003
cd05062	277	cd05062, PTKc_IGF-1R, Catalytic domain of the Prot	0.003
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	0.003
pfam04652	315	pfam04652, DUF605, Vta1 like	0.004

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score =  113 bits (284), Expect = 5e-28
 Identities = 81/284 (28%), Positives = 114/284 (40%), Gaps = 47/284 (16%)

Query: 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEV-QFRKKIDTLSKVNHKNFV 434
             +G    G VYKG L          V+V + K+     E   F K+   + K+ H N V
Sbjct: 1   KKLGEGAFGEVYKGKLKGKDGKTTE-VAVKTLKEDASEEERKDFLKEARVMKKLGHPNVV 59

Query: 435 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIK-------ESEHLDWGMRLR----IAMG 483
            L+G C EEEP    +V EY   G L +++          E   L     L     IA G
Sbjct: 60  RLLGVCTEEEPL--YLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKG 117

Query: 484 MAYCLEHMHQLNPPIA-HNYLNSSAVHLTEDYAAKLSD--LSFWNEIAMAEMAATSKKLS 540
           M Y L     ++  +A  N L      + ED   K+SD  LS            T  KL 
Sbjct: 118 MEY-LASKKFVHRDLAARNCL------VGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLP 170

Query: 541 ---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQ 590
               AP +      + +S+V++FGVLL+E+ T G  PY     S E+       G +  +
Sbjct: 171 IRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPY--PGLSNEEVLEYLRKGYRLPK 228

Query: 591 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR 634
               P          + L EL+ SC + DPE RPT  ++   L 
Sbjct: 229 ----PEYCP------DELYELMLSCWQLDPEDRPTFSELVERLE 262

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score =  107 bits (270), Expect = 4e-26
 Identities = 82/283 (28%), Positives = 118/283 (41%), Gaps = 50/283 (17%)

Query: 374 FSNVIGSSPIGTVYKGTL---SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH 430
               +G    G VYKGTL     G E  VA V         +  E +F ++   + K++H
Sbjct: 3   LGKKLGEGAFGEVYKGTLKGDGEGTETKVA-VKTLKEGASEEERE-EFLEEASIMKKLSH 60

Query: 431 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLR----IAMGMAY 486
            N V L+G C + EP    +V EY P G L + +  K  E L     L+    IA GM Y
Sbjct: 61  PNIVRLLGVCTQGEPL--YIVTEYMPGGDLLDFLR-KHGEKLTLKDLLQMALQIAKGMEY 117

Query: 487 CLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD--LSFWNEIAMAEMAATSKKLSS--- 541
            LE  +       H  L +    +TE+   K+SD  LS      + E     K+      
Sbjct: 118 -LESKN-----FVHRDLAARNCLVTENLVVKISDFGLS----RDIYEDDYYRKRGGGKLP 167

Query: 542 ----APSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQ 590
               AP +      + +S+V++FGVLL+E+ T G  PY     S E+   + L     L 
Sbjct: 168 IKWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGEQPY--PGMSNEE-VLELLEDGYRLP 224

Query: 591 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 633
           +   P          + L EL+  C   DPE RPT  ++   L
Sbjct: 225 R---PENCP------DELYELMLQCWAYDPEDRPTFSELVEDL 258

Length = 258

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score =  105 bits (264), Expect = 8e-26
 Identities = 57/264 (21%), Positives = 99/264 (37%), Gaps = 65/264 (24%)

Query: 378 IGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNL 436
           +G    GTVY       G ++A+  +     K+   +L  +  ++I+ L K+NH N V L
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIK----KEDSSSLLEELLREIEILKKLNHPNIVKL 56

Query: 437 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNP 496
            G  E+E      +V EY   G+L + +  +    L     LRI + +   LE++H    
Sbjct: 57  YGVFEDENHL--YLVMEYCEGGSLKDLLK-ENEGKLSEDEILRILLQILEGLEYLHSNG- 112

Query: 497 PIAHNYLNSSAVHLTEDYA-AKLSDLSFWNEIAMAEMAATSKK----------LSSAPSA 545
            I H  L    + L  D    KL+D      +   +    +            L      
Sbjct: 113 -IIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGKGYY 171

Query: 546 SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL 605
           S +S++++ GV+L+E+                                            
Sbjct: 172 SEKSDIWSLGVILYEL-------------------------------------------- 187

Query: 606 ETLGELIKSCVRADPEKRPTMRDI 629
             L +LI+  ++ DPEKRP+ ++I
Sbjct: 188 PELKDLIRKMLQKDPEKRPSAKEI 211

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score =  103 bits (260), Expect = 7e-25
 Identities = 78/286 (27%), Positives = 115/286 (40%), Gaps = 56/286 (19%)

Query: 374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNHKN 432
               +G    G VYKGTL    +     V+V + K+     +++ F ++   + K++H N
Sbjct: 3   LGKKLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPN 62

Query: 433 FVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLR----IAMGMAYCL 488
            V L+G C EEEP   M+V EY P G L +++     + L     L     IA GM Y L
Sbjct: 63  IVKLLGVCTEEEPL--MIVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEY-L 119

Query: 489 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD--LS------------------FWNEIA 528
           E          H  L +    + E+   K+SD  LS                   W    
Sbjct: 120 ESK-----NFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKVKGGKLPIRW---- 170

Query: 529 MAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 587
           MA  +    K +S       S+V++FGVLL+E+ T G  PY     S  +       G +
Sbjct: 171 MAPESLKEGKFTSK------SDVWSFGVLLWEIFTLGEEPY--PGMSNAEVLEYLKKGYR 222

Query: 588 PLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 633
             +    P            L +L+  C   DPE RPT  ++  IL
Sbjct: 223 LPKPPNCP----------PELYKLMLQCWAEDPEDRPTFSELVEIL 258

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score =  101 bits (253), Expect = 7e-24
 Identities = 78/286 (27%), Positives = 113/286 (39%), Gaps = 57/286 (19%)

Query: 374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNHKN 432
               +G    G VYKG L          V+V + K+     +++ F ++   + K++H N
Sbjct: 3   LGKKLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPN 62

Query: 433 FVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLR----IAMGMAYCL 488
            V L+G C EEEP    +V EY   G L  ++  K    L     L     IA GM Y L
Sbjct: 63  VVKLLGVCTEEEPL--YIVMEYMEGGDLLSYLR-KNRPKLSLSDLLSFALQIARGMEY-L 118

Query: 489 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD--LS------------------FWNEIA 528
           E  +       H  L +    + E+   K+SD  LS                   W    
Sbjct: 119 ESKN-----FIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYRKRGGKLPIRW---- 169

Query: 529 MAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 587
           MA  +    K +S       S+V++FGVLL+E+ T G  PY     S E+      +G +
Sbjct: 170 MAPESLKEGKFTSK------SDVWSFGVLLWEIFTLGEQPY--PGMSNEEVLEYLKNGYR 221

Query: 588 PLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 633
             Q    P            L +L+  C   DPE RPT  ++  IL
Sbjct: 222 LPQPPNCP----------PELYDLMLQCWAEDPEDRPTFSELVEIL 257

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 91.2 bits (227), Expect = 2e-20
 Identities = 70/274 (25%), Positives = 116/274 (42%), Gaps = 46/274 (16%)

Query: 377 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 435
            +GS   GTVYK      G  +AV  +   S K      +   R++I  L +++H N V 
Sbjct: 6   KLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSK---KDQTARREIRILRRLSHPNIVR 62

Query: 436 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLN 495
           LI   E+++     +V EY   G LF+++       L      +IA+ +   LE++H   
Sbjct: 63  LIDAFEDKD--HLYLVMEYCEGGDLFDYLS--RGGPLSEDEAKKIALQILRGLEYLHSNG 118

Query: 496 PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKK----------------L 539
             I H  L    + L E+   K++D         A+    S                  L
Sbjct: 119 --IIHRDLKPENILLDENGVVKIADFGL------AKKLLKSSSSLTTFVGTPWYMAPEVL 170

Query: 540 SSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS 599
                   + +V++ GV+L+E++TG+ P+            + L  +Q +++ + P L  
Sbjct: 171 LGGNGYGPKVDVWSLGVILYELLTGKPPF---------SGENILDQLQLIRRILGPPL-E 220

Query: 600 FDEEQL----ETLGELIKSCVRADPEKRPTMRDI 629
           FDE +     E   +LIK C+  DP KRPT  +I
Sbjct: 221 FDEPKWSSGSEEAKDLIKKCLNKDPSKRPTAEEI 254

Length = 260

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 89.1 bits (222), Expect = 7e-20
 Identities = 60/277 (21%), Positives = 99/277 (35%), Gaps = 56/277 (20%)

Query: 376 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV 434
             +G    G VY       G  +A+  +     K   +    +  ++I  L K+ H N V
Sbjct: 5   EKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRE----RILREIKILKKLKHPNIV 60

Query: 435 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL 494
            L    E+E+     +V EY   G LF+ +  K+   L           +   LE++H  
Sbjct: 61  RLYDVFEDEDKLY--LVMEYCEGGDLFDLL--KKRGRLSEDEARFYLRQILSALEYLHSK 116

Query: 495 NPPIAH------NYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS------- 541
              I H      N L      L ED   KL+D         A      +KL++       
Sbjct: 117 G--IVHRDLKPENIL------LDEDGHVKLADFGL------ARQLDPGEKLTTFVGTPEY 162

Query: 542 -AP------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 594
            AP            ++++ GV+L+E++TG+ P+    G  +             ++   
Sbjct: 163 MAPEVLLGKGYGKAVDIWSLGVILYELLTGKPPF---PGDDQLLEL--------FKKIGK 211

Query: 595 PTLSSFDEEQL--ETLGELIKSCVRADPEKRPTMRDI 629
           P       E        +LI+  +  DPEKR T  + 
Sbjct: 212 PKPPFPPPEWDISPEAKDLIRKLLVKDPEKRLTAEEA 248

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 72/288 (25%), Positives = 117/288 (40%), Gaps = 64/288 (22%)

Query: 378 IGSSPIGTVYKGT--LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 435
           +G    G+V KG   + +G E+ VA V     +      + +F ++   +++++H   V 
Sbjct: 3   LGHGNFGSVVKGVYLMKSGKEVEVA-VKTLKQEHIA-AGKKEFLREASVMAQLDHPCIVR 60

Query: 436 LIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESEHLDWGMRLRIAMGMAYCLEHM 491
           LIG C + EP   M+V E AP G L +++     I  S+  +     ++AMGMAY LE  
Sbjct: 61  LIGVC-KGEPL--MLVMELAPLGPLLKYLKKRREIPVSDLKELA--HQVAMGMAY-LESK 114

Query: 492 HQLNPPIAHNYLNSSAVHLTEDYAAKLSD------LSFWNEIAMAEMAATSKKLSSAPSA 545
           H       H  L +  V L   + AK+SD      L   ++   A  A        AP  
Sbjct: 115 H-----FVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAGRWPLKWYAPEC 169

Query: 546 ------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS 598
                 S +S+V+++GV L+E  + G  PY              + G + +         
Sbjct: 170 INYGKFSSKSDVWSYGVTLWEAFSYGAKPY------------GEMKGAEVIAML------ 211

Query: 599 SFDEEQLETLG----------ELIKSCVRADPEKRPTMRDIAAILREI 636
               E  E L            ++ SC +  PE RPT  ++ +  R  
Sbjct: 212 ----ESGERLPRPEECPQEIYSIMLSCWKYRPEDRPTFSELESTFRRD 255

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 78.9 bits (195), Expect = 3e-16
 Identities = 74/273 (27%), Positives = 120/273 (43%), Gaps = 61/273 (22%)

Query: 378 IGSSPIGTVYKGTLSNGVEIAV-----ASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN 432
           +G+   G V+ GT +   ++AV      ++S  +           F ++   + K+ H  
Sbjct: 14  LGAGQFGEVWMGTWNGTTKVAVKTLKPGTMSPEA-----------FLQEAQIMKKLRHDK 62

Query: 433 FVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRLRIAMGMAYCL 488
            V L   C EEEP    +V EY   G+L + +   E + L       M  +IA GMAY L
Sbjct: 63  LVQLYAVCSEEEPI--YIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAY-L 119

Query: 489 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-MAATSKKLS---SAPS 544
           E  + +     H  L +  + + E+   K++D      I   E  A    K     +AP 
Sbjct: 120 ESRNYI-----HRDLAARNILVGENLVCKIADFGLARLIEDDEYTAREGAKFPIKWTAPE 174

Query: 545 A------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVD--- 594
           A      +++S+V++FG+LL E+VT GR+PY              ++  + L+Q V+   
Sbjct: 175 AANYGRFTIKSDVWSFGILLTEIVTYGRVPY------------PGMTNREVLEQ-VERGY 221

Query: 595 --PTLSSFDEEQLETLGELIKSCVRADPEKRPT 625
             P   +  EE    L +L+  C   DPE+RPT
Sbjct: 222 RMPRPPNCPEE----LYDLMLQCWDKDPEERPT 250

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 78.2 bits (193), Expect = 4e-16
 Identities = 70/273 (25%), Positives = 109/273 (39%), Gaps = 52/273 (19%)

Query: 373 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN 432
                IG    G V  G            V+V   KD     +  F  +   ++ + H N
Sbjct: 9   KLGATIGKGEFGDVMLGDYRG------QKVAVKCLKDDSTAAQ-AFLAEASVMTTLRHPN 61

Query: 433 FVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAM----GMAYCL 488
            V L+G   +  P    +V EY   G+L +++  +    +    +L  A+    GM Y L
Sbjct: 62  LVQLLGVVLQGNPL--YIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEY-L 118

Query: 489 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLS---SAPSA 545
           E  +       H  L +  V ++ED  AK+SD     E   A     S KL    +AP A
Sbjct: 119 EEKN-----FVHRDLAARNVLVSEDLVAKVSDFGLAKE---ASQGQDSGKLPVKWTAPEA 170

Query: 546 ------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS 598
                 S +S+V++FG+LL+E+ + GR+PY                   PL+  V     
Sbjct: 171 LREKKFSTKSDVWSFGILLWEIYSFGRVPY----------------PRIPLKDVVPHVEK 214

Query: 599 SFDEEQLET----LGELIKSCVRADPEKRPTMR 627
            +  E  E     + +++K C   DP KRPT +
Sbjct: 215 GYRMEAPEGCPPEVYKVMKDCWELDPAKRPTFK 247

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 76.0 bits (187), Expect = 2e-15
 Identities = 72/283 (25%), Positives = 115/283 (40%), Gaps = 58/283 (20%)

Query: 378 IGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 437
           IG    G VYKG L    E+AV +         P +L+ +F ++ + L + +H N V LI
Sbjct: 3   IGKGNFGDVYKGVLKGNTEVAVKTCRS----TLPPDLKRKFLQEAEILKQYDHPNIVKLI 58

Query: 438 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD----WGMRLRIAMGMAYCLEHMHQ 493
           G C +++P    +V E  P G+L   +  K+   L       M L  A GM Y LE  + 
Sbjct: 59  GVCVQKQPI--YIVMELVPGGSLLTFLR-KKKNRLTVKKLLQMSLDAAAGMEY-LESKNC 114

Query: 494 LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLS-----SAPSA--- 545
           +     H  L +    + E+   K+SD     E        +          +AP A   
Sbjct: 115 I-----HRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAPEALNY 169

Query: 546 ---SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGV--QPLQQFVD----- 594
              + ES+V+++G+LL+E  + G  PY                G+  Q  ++ ++     
Sbjct: 170 GRYTSESDVWSYGILLWETFSLGDTPY---------------PGMSNQQTRERIESGYRM 214

Query: 595 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT 637
           P      EE    +  L+  C   DPE RP+    + I  E+ 
Sbjct: 215 PAPQLCPEE----IYRLMLQCWAYDPENRPSF---SEIYNELQ 250

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 77.5 bits (189), Expect = 4e-15
 Identities = 62/307 (20%), Positives = 104/307 (33%), Gaps = 34/307 (11%)

Query: 377 VIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH-KNFVN 435
            +G    G VY           VA   +A   +       +F ++I  L+ +NH  N V 
Sbjct: 7   KLGEGSFGEVYLARD----RKLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVK 62

Query: 436 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEH-LDWGMRLRIAMGMAYCLEHMHQL 494
           L  F ++E      +V EY   G+L + +     +  L     L I   +   LE++H  
Sbjct: 63  LYDFFQDEGSL--YLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSK 120

Query: 495 NPPIAHNYLNSSAVHLTEDY-AAKLSDL-----------SFWNEIAMAEMAATS------ 536
              I H  +    + L  D    KL D            +       +    T       
Sbjct: 121 G--IIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPE 178

Query: 537 -KKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP 595
                S   AS  S++++ G+ L+E++TG  P+  +  S        +    P      P
Sbjct: 179 VLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPSLASP 238

Query: 596 TLSSFDEEQLETLGELIKSCVRADPEKRPTM-----RDIAAILREITGITPDGAIPKLSP 650
              S  E   +   +L+K  +  DP+ R +       D+ A L+       D   P  S 
Sbjct: 239 LSPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLSHDLLAHLKLKESDLSDLLKPDDSA 298

Query: 651 LWWAEIE 657
                + 
Sbjct: 299 PLRLSLP 305

Length = 384

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 74.0 bits (182), Expect = 1e-14
 Identities = 74/283 (26%), Positives = 121/283 (42%), Gaps = 43/283 (15%)

Query: 377 VIGSSPIGTVY----KGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN 432
            +G    G V+    KG    G E  V   ++   KD  +NL+ +FR+++D   K++HKN
Sbjct: 12  TLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKD--ENLQSEFRRELDMFRKLSHKN 69

Query: 433 FVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEH-------LDWGMRLRIAMGMA 485
            V L+G C E EP    M+ EY   G L + +   +S+        L    ++ +   +A
Sbjct: 70  VVRLLGLCREAEPH--YMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIA 127

Query: 486 YCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS---- 541
             ++H+   N    H  L +    ++     K+S LS   ++  +E       L      
Sbjct: 128 LGMDHLS--NARFVHRDLAARNCLVSSQREVKVSLLSLSKDVYNSEYYKLRNALIPLRWL 185

Query: 542 APSASLE------SNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAADYLSGVQPLQQF 592
           AP A  E      S+V++FGVL++E+ T G LP+  L D   L    A  L    P    
Sbjct: 186 APEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSDEEVLNRLQAGKLELPVP---- 241

Query: 593 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
                    E     L +L+  C   +P+ RP+  ++ + L E
Sbjct: 242 ---------EGCPSRLYKLMTRCWAVNPKDRPSFSELVSALGE 275

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 72.5 bits (179), Expect = 3e-14
 Identities = 66/288 (22%), Positives = 108/288 (37%), Gaps = 75/288 (26%)

Query: 376 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKK----IDTLSKVNH 430
             IG    G VY     S+G    +  + +        N+  + R+     +  L K+NH
Sbjct: 6   KQIGKGSFGKVYLVRRKSDGKLYVLKEIDL-------SNMSEKEREDALNEVKILKKLNH 58

Query: 431 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--------HIKESEHLDWGMRLRIAM 482
            N +      EE+      +V EYA  G L + I           E + LDW   +++ +
Sbjct: 59  PNIIKYYESFEEKGKL--CIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDW--FVQLCL 114

Query: 483 GMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS- 541
                L+++H     I H  +    + LT +   KL D               SK LSS 
Sbjct: 115 A----LKYLHSRK--ILHRDIKPQNIFLTSNGLVKLGDFGI------------SKVLSST 156

Query: 542 APSAS-------------LESNVYNF-------GVLLFEMVTGRLPYLVDNGSLEDWAAD 581
              A               ++  YN+       G +L+E+ T + P+  +  +L + A  
Sbjct: 157 VDLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPF--EGENLLELALK 214

Query: 582 YLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
            L G  P      P  S +  E    L  L+ S ++ DPE+RP++  I
Sbjct: 215 ILKGQYP------PIPSQYSSE----LRNLVSSLLQKDPEERPSIAQI 252

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 72.6 bits (179), Expect = 4e-14
 Identities = 56/265 (21%), Positives = 100/265 (37%), Gaps = 35/265 (13%)

Query: 376 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV 434
            ++G    G+VY       G  +AV SV ++   D  + LE    ++I  LS + H N V
Sbjct: 6   ELLGRGSFGSVYLALDKDTGELMAVKSVELS--GDSEEELE-ALEREIRILSSLQHPNIV 62

Query: 435 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH--IKESEHLDWGMRLRIAMGMAYCLEHMH 492
              G   +EE  T  +  EY   G+L   +    K  E +   +R      +   L ++H
Sbjct: 63  RYYGSERDEEKNTLNIFLEYVSGGSLSSLLKKFGKLPEPV---IRKYTRQ-ILEGLAYLH 118

Query: 493 QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS-----AP---- 543
                I H  +  + + +  D   KL+D      +   E    +  +       AP    
Sbjct: 119 SNG--IVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIR 176

Query: 544 --SASLESNVYNFGVLLFEMVTGRLPY-LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF 600
                  +++++ G  + EM TG+ P+  + N     +          + + +      F
Sbjct: 177 GEEYGRAADIWSLGCTVIEMATGKPPWSELGNPMAALYKIGSSGEPPEIPEHLSEEAKDF 236

Query: 601 DEEQLETLGELIKSCVRADPEKRPT 625
                      ++ C+R DP+KRPT
Sbjct: 237 -----------LRKCLRRDPKKRPT 250

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 72.1 bits (177), Expect = 6e-14
 Identities = 66/264 (25%), Positives = 116/264 (43%), Gaps = 39/264 (14%)

Query: 378 IGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 437
           +GS   G V++G   N V +A+  +            +  F+K++  L ++ HK+ ++L 
Sbjct: 14  LGSGYFGEVWEGLWKNRVRVAIKILKSDDLL----KQQ-DFQKEVQALKRLRHKHLISLF 68

Query: 438 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD----WGMRLRIAMGMAYCLEHMHQ 493
             C   EP    ++ E    G+L   +   E + L       M  ++A GMAY LE  + 
Sbjct: 69  AVCSVGEPV--YIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAY-LEEQN- 124

Query: 494 LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLS---SAPSA----- 545
                 H  L +  + + ED   K++D      I      ++ KK+    +AP A     
Sbjct: 125 ----SIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYLSSDKKIPYKWTAPEAASHGT 180

Query: 546 -SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 603
            S +S+V++FG+LL+EM T G++PY    G       D     Q    +  P  +   +E
Sbjct: 181 FSTKSDVWSFGILLYEMFTYGQVPY---PGMNNHEVYD-----QITAGYRMPCPAKCPQE 232

Query: 604 QLETLGELIKSCVRADPEKRPTMR 627
               + +++  C  A+PE RP+ +
Sbjct: 233 ----IYKIMLECWAAEPEDRPSFK 252

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 69.8 bits (171), Expect = 3e-13
 Identities = 73/270 (27%), Positives = 115/270 (42%), Gaps = 55/270 (20%)

Query: 378 IGSSPIGTVYKGTLSNGVEIAVASVS--VASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 435
           +G+   G V++G  +N   +AV ++       KD+    E Q  KK+       H   + 
Sbjct: 14  LGAGQFGEVWEGLWNNTTPVAVKTLKPGTMDPKDFLA--EAQIMKKL------RHPKLIQ 65

Query: 436 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRLRIAMGMAYCLEHM 491
           L   C  EEP    +V E    G+L E++       L       M  ++A GMAY LE  
Sbjct: 66  LYAVCTLEEPI--YIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAY-LEAQ 122

Query: 492 HQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAA-TSKKLS---SAPSA-- 545
           + +     H  L +  V + E+   K++D      I      A    K     +AP A  
Sbjct: 123 NYI-----HRDLAARNVLVGENNICKVADFGLARVIKEDIYEAREGAKFPIKWTAPEAAL 177

Query: 546 ----SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVD-----P 595
               S++S+V++FG+LL E+VT GR+PY              ++  + LQQ VD     P
Sbjct: 178 YNRFSIKSDVWSFGILLTEIVTYGRMPY------------PGMTNAEVLQQ-VDQGYRMP 224

Query: 596 TLSSFDEEQLETLGELIKSCVRADPEKRPT 625
                 +E    L +++  C + DP+ RPT
Sbjct: 225 CPPGCPKE----LYDIMLDCWKEDPDDRPT 250

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 69.8 bits (171), Expect = 4e-13
 Identities = 76/310 (24%), Positives = 125/310 (40%), Gaps = 86/310 (27%)

Query: 374 FSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDW--PKNLEVQFRKKIDTLSKVNH 430
           F   +G    G VYKG L+     ++  SV++ + K+   PK ++ +FR++ + +S + H
Sbjct: 9   FLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPK-VQQEFRQEAELMSDLQH 67

Query: 431 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWG--------------- 475
            N V L+G C +E+P    M+FEY  +G L E + ++ S H D G               
Sbjct: 68  PNIVCLLGVCTKEQPTC--MLFEYLAHGDLHEFL-VRNSPHSDVGAESGDETVKSSLDCS 124

Query: 476 ----MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE 531
               + ++IA GM Y   H         H  L +    + E    K+SD     +I  A+
Sbjct: 125 DFLHIAIQIAAGMEYLSSHH------FVHRDLAARNCLVGEGLTVKISDFGLSRDIYSAD 178

Query: 532 -MAATSKKLSS----APSA------SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAA 580
                SK L       P A      + ES++++FGV+L+E+                   
Sbjct: 179 YYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEI------------------- 219

Query: 581 DYLSGVQPLQQFVDPTLSSFDEEQLETLGE----------------LIKSCVRADPEKRP 624
            +  G+QP   F        ++E +E +                  L+  C    P +RP
Sbjct: 220 -FSYGLQPYYGFS-------NQEVIEMIRSRQLLPCPEDCPARVYALMIECWNEIPARRP 271

Query: 625 TMRDIAAILR 634
             +DI   LR
Sbjct: 272 RFKDIHTRLR 281

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 69.2 bits (169), Expect = 5e-13
 Identities = 67/279 (24%), Positives = 125/279 (44%), Gaps = 45/279 (16%)

Query: 374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF 433
               IGS   G V+ G      ++A+ ++   +        E  F ++   + K++H   
Sbjct: 8   LVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAMS------EEDFIEEAQVMMKLSHPKL 61

Query: 434 VNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE---SEHLDWGMRLRIAMGMAYCLEH 490
           V L G C E  P    +VFE+  +G L +++  +    S+    GM L +  GMAY LE 
Sbjct: 62  VQLYGVCTERSPIC--LVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAY-LES 118

Query: 491 MHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM--AATSKKLS---SAPSA 545
            +     + H  L +    + E+   K+SD        + +   ++T  K     S+P  
Sbjct: 119 SN-----VIHRDLAARNCLVGENQVVKVSDFGM-TRFVLDDQYTSSTGTKFPVKWSSPEV 172

Query: 546 ------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS 598
                 S +S+V++FGVL++E+ + G+ PY  +N S  +      +G +  +    P L+
Sbjct: 173 FSFSKYSSKSDVWSFGVLMWEVFSEGKTPY--ENRSNSEVVETINAGFRLYK----PRLA 226

Query: 599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT 637
           S      +++ EL++ C +  PE RP+    + +L ++ 
Sbjct: 227 S------QSVYELMQHCWKERPEDRPSF---SLLLHQLA 256

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 68.9 bits (168), Expect = 7e-13
 Identities = 69/273 (25%), Positives = 129/273 (47%), Gaps = 45/273 (16%)

Query: 378 IGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNHKNFVNL 436
           +G+   G V+ G  +N  ++AV ++        P  + VQ F ++ + +  + H   V L
Sbjct: 14  LGAGQFGEVWMGYYNNSTKVAVKTLK-------PGTMSVQAFLEEANLMKTLQHDKLVRL 66

Query: 437 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRLRIAMGMAYCLEHMH 492
                +EEP    ++ EY   G+L + +   E   +          +IA GMAY +E  +
Sbjct: 67  YAVVTKEEPI--YIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAY-IERKN 123

Query: 493 QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW-----NEIAMAEMAATSKKLSSAPSA-- 545
            +     H  L ++ V ++E    K++D         NE    E A    K + AP A  
Sbjct: 124 YI-----HRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWT-APEAIN 177

Query: 546 ----SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF 600
               +++S+V++FG+LL+E+VT G++PY   + S      D +S +Q  + +  P + + 
Sbjct: 178 FGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNS------DVMSALQ--RGYRMPRMENC 229

Query: 601 DEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 633
            +E    L +++K+C +   E+RPT   + ++L
Sbjct: 230 PDE----LYDIMKTCWKEKAEERPTFDYLQSVL 258

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.0 bits (174), Expect = 1e-12
 Identities = 41/112 (36%), Positives = 57/112 (50%), Gaps = 11/112 (9%)

Query: 61  NPCS-----WFGVEC----SDGK--VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSF 109
           +PC      W G +C    + GK  +  L L +  L G +  +I  L H++SI L  NS 
Sbjct: 395 DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSI 454

Query: 110 SGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSL 161
            G IP   G +  LEVLD  +N+F+G +P  LG   SL IL L+ N   G +
Sbjct: 455 RGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 68.4 bits (168), Expect = 1e-12
 Identities = 59/289 (20%), Positives = 103/289 (35%), Gaps = 81/289 (28%)

Query: 373 DFSNV--IGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN 429
            F  +  IG    G VYK      G E+A+  + + S +   K +      +I  L K  
Sbjct: 1   LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKII-----NEIQILKKCK 55

Query: 430 HKNFVNLIG--FCEEEEPFTRMMVFEYAPNGTLFEHIH-----IKESEHLDWGMRLRIAM 482
           H N V   G    ++E      +V E+   G+L + +      + ES+         IA 
Sbjct: 56  HPNIVKYYGSYLKKDE----LWIVMEFCSGGSLKDLLKSTNQTLTESQ---------IA- 101

Query: 483 GMAYC------LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATS 536
               C      LE++H     I H  + ++ + LT D   KL D               S
Sbjct: 102 --YVCKELLKGLEYLHSNG--IIHRDIKAANILLTSDGEVKLIDFGL------------S 145

Query: 537 KKLSSAPSA--------------------SLESNVYNFGVLLFEMVTGRLPYLVDNGSLE 576
            +LS   +                       ++++++ G+   E+  G+ PY  +   + 
Sbjct: 146 AQLSDTKARNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPY-SELPPM- 203

Query: 577 DWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT 625
              A +           +P   S      +   + +K C++ +PEKRPT
Sbjct: 204 --KALFKIATNGPPGLRNPEKWS------DEFKDFLKKCLQKNPEKRPT 244

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 59/301 (19%), Positives = 108/301 (35%), Gaps = 69/301 (22%)

Query: 374 FSNVIGSSPIGTVYKGTLSN-----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV 428
           F   +G    G V            G ++AV S++        +     F ++I+ L  +
Sbjct: 8   FIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNH----SGEEQHRSDFEREIEILRTL 63

Query: 429 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLR----IAMGM 484
           +H+N V   G CE+    +  ++ EY P+G+L +++  +  + ++    L     I  GM
Sbjct: 64  DHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQ-RHRDQINLKRLLLFSSQICKGM 122

Query: 485 AYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS--- 541
            Y L           H  L +  + +  +   K+SD      +   +     K+      
Sbjct: 123 DY-LGSQR-----YIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPI 176

Query: 542 ---APSA------SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQF 592
              AP        S  S+V++FGV L+E+ T   P                    P  +F
Sbjct: 177 FWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQS-----------------PPAEF 219

Query: 593 VDPTLSSFDEEQLETLGELIKS--------------------CVRADPEKRPTMRDIAAI 632
           +     +  +  +  L EL+K                     C  A+P+ RP+  D+  I
Sbjct: 220 LRMIGIAQGQMIVTRLLELLKEGERLPRPPSCPDEVYDLMKLCWEAEPQDRPSFADLILI 279

Query: 633 L 633
           +
Sbjct: 280 V 280

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 67.0 bits (163), Expect = 3e-12
 Identities = 71/275 (25%), Positives = 123/275 (44%), Gaps = 46/275 (16%)

Query: 378 IGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 437
           +G    G V+ GT +    +A+ ++   +    P+     F ++   + K+ H+  V L 
Sbjct: 14  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS--PE----AFLQEAQVMKKLRHEKLVQLY 67

Query: 438 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRLRIAMGMAYCLEHMHQ 493
               EE  +   +V EY   G+L + +  +  ++L       M  +IA GMAY +E M+ 
Sbjct: 68  AVVSEEPIY---IVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAY-VERMNY 123

Query: 494 LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAA-TSKKLS---SAPSASL-- 547
           +     H  L ++ + + E+   K++D      I   E  A    K     +AP A+L  
Sbjct: 124 V-----HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG 178

Query: 548 ----ESNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF 600
               +S+V++FG+LL E+ T GR+PY  +V+   L+     Y     P            
Sbjct: 179 RFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPP------------ 226

Query: 601 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
             E  E+L +L+  C R +PE+RPT   + A L +
Sbjct: 227 --ECPESLHDLMCQCWRKEPEERPTFEYLQAFLED 259

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 69.1 bits (169), Expect = 5e-12
 Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 7/140 (5%)

Query: 28  LNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSD-GKVVNLNLKDLCLE 86
           L+ E L LL   +  + DP   L++W S     + C W G+ C++  +VV+++L    + 
Sbjct: 26  LHAEELELLLSFKSSINDPLKYLSNWNS---SADVCLWQGITCNNSSRVVSIDLSGKNIS 82

Query: 87  GTLAPEIQSLTHIKSIILRNNSFSGIIPEG-FGELEELEVLDFGHNNFSGPLPNDLGINH 145
           G ++  I  L +I++I L NN  SG IP+  F     L  L+  +NNF+G +P   G   
Sbjct: 83  GKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIP 140

Query: 146 SLTILLLDNNDFVGSLSPEI 165
           +L  L L NN   G +  +I
Sbjct: 141 NLETLDLSNNMLSGEIPNDI 160

Length = 968

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 66.2 bits (161), Expect = 5e-12
 Identities = 60/264 (22%), Positives = 115/264 (43%), Gaps = 32/264 (12%)

Query: 377 VIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNL 436
           ++G    G V+KGTL +   +AV +      +D P+ L+++F  +   L + +H N V L
Sbjct: 2   LLGKGNFGEVFKGTLKDKTPVAVKTCK----EDLPQELKIKFLSEARILKQYDHPNIVKL 57

Query: 437 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNP 496
           IG C + +P    +V E  P G     +  K+ + L     ++ A+  A  + ++   N 
Sbjct: 58  IGVCTQRQPI--YIVMELVPGGDFLSFLR-KKKDELKTKQLVKFALDAAAGMAYLESKN- 113

Query: 497 PIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLS----SAPSA------S 546
              H  L +    + E+   K+SD     +      +++  K      +AP A      S
Sbjct: 114 -CIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIPIKWTAPEALNYGRYS 172

Query: 547 LESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL 605
            ES+V+++G+LL+E  + G  PY              ++  Q  +Q       S  ++  
Sbjct: 173 SESDVWSYGILLWETFSLGVCPY------------PGMTNQQAREQVEKGYRMSCPQKCP 220

Query: 606 ETLGELIKSCVRADPEKRPTMRDI 629
           + + ++++ C    PE RP   ++
Sbjct: 221 DDVYKVMQRCWDYKPENRPKFSEL 244

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 66.2 bits (161), Expect = 6e-12
 Identities = 72/275 (26%), Positives = 125/275 (45%), Gaps = 46/275 (16%)

Query: 378 IGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 437
           +G    G V+ GT +   ++A+ ++   +    P+     F ++   + K+ H   V L 
Sbjct: 14  LGQGCFGEVWMGTWNGTTKVAIKTLKPGTMM--PE----AFLQEAQIMKKLRHDKLVPLY 67

Query: 438 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRLRIAMGMAYCLEHMHQ 493
               EE  +   +V E+   G+L + +   + ++L       M  +IA GMAY +E M+ 
Sbjct: 68  AVVSEEPIY---IVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAY-IERMNY 123

Query: 494 LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAA-TSKKLS---SAPSASL-- 547
           +     H  L ++ + + ++   K++D      I   E  A    K     +AP A+L  
Sbjct: 124 I-----HRDLRAANILVGDNLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG 178

Query: 548 ----ESNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF 600
               +S+V++FG+LL E+VT GR+PY  +V+   LE     Y     P  Q         
Sbjct: 179 RFTIKSDVWSFGILLTELVTKGRVPYPGMVNREVLEQVERGYR---MPCPQGCP------ 229

Query: 601 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
                E+L EL+K C + DP++RPT   I + L +
Sbjct: 230 -----ESLHELMKLCWKKDPDERPTFEYIQSFLED 259

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 65.9 bits (161), Expect = 8e-12
 Identities = 70/276 (25%), Positives = 115/276 (41%), Gaps = 37/276 (13%)

Query: 378 IGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN- 435
           IG      VYK   L +G  +A+  V +    D  K  +    K+ID L +++H N +  
Sbjct: 10  IGKGQFSVVYKAICLLDGRVVALKKVQIFEMMD-AKARQ-DCLKEIDLLKQLDHPNVIKY 67

Query: 436 LIGFCEEEEPFTRMMVFEYAPNGTLFEHI-HIKESEHL-----DWGMRLRIAMGMAYCLE 489
           L  F E  E     +V E A  G L   I H K+ + L      W   +++       LE
Sbjct: 68  LASFIENNE---LNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSA----LE 120

Query: 490 HMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSK---KLSSAPSA- 545
           HMH     I H  +  + V +T     KL DL      +    AA S        +P   
Sbjct: 121 HMHSKR--IMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERI 178

Query: 546 -----SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF 600
                + +S++++ G LL+EM   + P+  D  +L           + +++   P L + 
Sbjct: 179 HENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSL-------CKKIEKCDYPPLPA- 230

Query: 601 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
            +   E L +L+  C+  DPEKRP +  +  + +E+
Sbjct: 231 -DHYSEELRDLVSRCINPDPEKRPDISYVLQVAKEM 265

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 66/293 (22%), Positives = 119/293 (40%), Gaps = 57/293 (19%)

Query: 367 LEAACEDFSNVIGSSPIGTVYKGTLS----NGVEIAVASV-SVASAKDWPKNLEVQFRKK 421
           ++ +      VIG    G V +G L       +++A+ ++ + +S K       + F  +
Sbjct: 1   IDPSYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQR-----LDFLTE 55

Query: 422 IDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMR 477
              + + +H N + L G   +  P   M++ EY  NG+L + +   +          GM 
Sbjct: 56  ASIMGQFDHPNIIRLEGVVTKSRPV--MIITEYMENGSLDKFLREND-GKFTVGQLVGML 112

Query: 478 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSK 537
             IA GM Y  E  +       H  L +  + +  +   K+SD      +  +E   T+K
Sbjct: 113 RGIASGMKYLSEMNY------VHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYTTK 166

Query: 538 --KLS---SAPSA------SLESNVYNFGVLLFE-MVTGRLPYLVDNGSLEDWA-ADYLS 584
             K+    +AP A      +  S+V++FG++++E M  G  PY        D +  D + 
Sbjct: 167 GGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPY-------WDMSNQDVIK 219

Query: 585 GVQP---LQQFVD-PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 633
            V+    L   +D P            L +L+  C + D  +RPT   I + L
Sbjct: 220 AVEDGYRLPPPMDCP----------SALYQLMLDCWQKDRNERPTFSQIVSTL 262

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 60/296 (20%), Positives = 111/296 (37%), Gaps = 42/296 (14%)

Query: 366 ELEAACEDFSNVIGSSPIGTVYKGTLSNGV-EIAVASVSVASAKDW-PKNLEVQFRKKID 423
            ++         +G    G V+ G   +   E     V+V + K+    +    F ++ +
Sbjct: 1   HVQRDTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAE 60

Query: 424 TLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMG 483
            L+   H+N V   G C E +P   +MVFEY  +G L + +         +       MG
Sbjct: 61  LLTNFQHENIVKFYGVCTEGDPP--IMVFEYMEHGDLNKFLR-SHGPDAAFLKSPDSPMG 117

Query: 484 MAYCLEHMHQLNPPIAHN--YLNSSA-VH---------LTEDYAAKLSDLSFWNEI---- 527
               L  + Q+   IA    YL S   VH         +  D   K+ D     ++    
Sbjct: 118 -ELTLSQLLQIAVQIASGMVYLASQHFVHRDLATRNCLVGYDLVVKIGDFGMSRDVYTTD 176

Query: 528 -------AMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWA 579
                   M  +     +       + ES+V++FGV+L+E+ T G+ P+           
Sbjct: 177 YYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWY---------- 226

Query: 580 ADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
              LS  + ++      L          + +++  C + DP++R  ++DI   L++
Sbjct: 227 --GLSNEEVIECITQGRLLQRPRTCPSEVYDIMLGCWKRDPQQRINIKDIHERLQK 280

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 64.2 bits (156), Expect = 2e-11
 Identities = 67/293 (22%), Positives = 119/293 (40%), Gaps = 57/293 (19%)

Query: 362 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASV-SVASAKDWPKNLEVQFRK 420
           L   EL+         IG    G V  G    G ++AV  + + A+A+         F  
Sbjct: 3   LNMKELK-----LLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDATAQ--------AFLA 48

Query: 421 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRI 480
           +   ++++ H N V L+G   EE+     +V EY   G+L +++  +    L     L+ 
Sbjct: 49  EASVMTQLRHSNLVQLLGVIVEEKG-GLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKF 107

Query: 481 AMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLS 540
           ++ +   +E++   N    H  L +  V ++ED  AK+SD     E +  +         
Sbjct: 108 SLDVCEAMEYLEANN--FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKW 165

Query: 541 SAPSA------SLESNVYNFGVLLFEMVT-GRLPY----------LVDNGSLEDWAADYL 583
           +AP A      S +S+V++FG+LL+E+ + GR+PY           V+ G    +  D  
Sbjct: 166 TAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKG----YKMDAP 221

Query: 584 SGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
            G  P+                  + +++K C   D   RP+   +   L  I
Sbjct: 222 DGCPPV------------------VYDVMKQCWHLDAATRPSFLQLREQLEHI 256

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 63.3 bits (154), Expect = 5e-11
 Identities = 63/275 (22%), Positives = 117/275 (42%), Gaps = 52/275 (18%)

Query: 376 NVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEV-QFRKKIDTLSKVNHKNF 433
           + +G    G VY+G      + +AV ++           +EV +F K+   + ++ H N 
Sbjct: 12  HKLGGGQYGEVYEGVWKKYSLTVAVKTLK-------EDTMEVEEFLKEAAVMKEIKHPNL 64

Query: 434 VNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD----WGMRLRIAMGMAYCLE 489
           V L+G C  E PF   ++ E+   G L +++     + ++      M  +I+  M Y LE
Sbjct: 65  VQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEY-LE 121

Query: 490 HMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF----WNEIAMAEMAATSKKLSSAPSA 545
             + +     H  L +    + E++  K++D         +   A   A      +AP +
Sbjct: 122 KKNFI-----HRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPES 176

Query: 546 ------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS 598
                 S++S+V+ FGVLL+E+ T G  PY                G+  L Q  +    
Sbjct: 177 LAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGID-LSQVYELLEK 220

Query: 599 SFDEEQLE----TLGELIKSCVRADPEKRPTMRDI 629
            +  E+ E     + EL+++C + +P  RP+  +I
Sbjct: 221 GYRMERPEGCPPKVYELMRACWQWNPSDRPSFAEI 255

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 63.8 bits (156), Expect = 5e-11
 Identities = 64/304 (21%), Positives = 108/304 (35%), Gaps = 74/304 (24%)

Query: 373 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQF---RKKI------ 422
            F  +IG     TV          E A+            K L+ +     KK+      
Sbjct: 4   KFGKIIGEGSFSTVVLAKEKETNKEYAI------------KILDKRQLIKEKKVKYVKIE 51

Query: 423 -DTLSKVN-HKNFVNLIG-FCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLR 479
            + L+++N H   + L   F +EE  +    V EYAPNG L ++I    S  LD      
Sbjct: 52  KEVLTRLNGHPGIIKLYYTFQDEENLY---FVLEYAPNGELLQYIRKYGS--LDEKCTRF 106

Query: 480 IAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD-----------LSFWNEIA 528
            A  +   LE++H     I H  L    + L +D   K++D               N+  
Sbjct: 107 YAAEILLALEYLHSKG--IIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGD 164

Query: 529 MAEMAATSKKLSSAPS------------------ASLESNVYNFGVLLFEMVTGRLPYLV 570
              + +  +K     +                  A   S+++  G ++++M+TG+ P+  
Sbjct: 165 ATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPF-- 222

Query: 571 DNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIA 630
             GS E     YL       Q +     SF         +LI+  +  DP+ R  + +  
Sbjct: 223 -RGSNE-----YL-----TFQKILKLEYSFPPNFPPDAKDLIEKLLVLDPQDRLGVNEGY 271

Query: 631 AILR 634
             L+
Sbjct: 272 DELK 275

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 63.1 bits (153), Expect = 6e-11
 Identities = 70/278 (25%), Positives = 117/278 (42%), Gaps = 37/278 (13%)

Query: 378 IGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNL 436
           IG      VY+ T L +GV +A+  V +    D     +    K+ID L ++NH N +  
Sbjct: 10  IGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCI--KEIDLLKQLNHPNVIKY 67

Query: 437 -IGFCEEEEPFTRMMVFEYAPNGTLFEHI-HIKESEHLD-----WGMRLRIAMGMAYCLE 489
              F E+ E     +V E A  G L   I H K+ + L      W    +  + +   LE
Sbjct: 68  YASFIEDNE---LNIVLELADAGDLSRMIKHFKKQKRLIPEKTVW----KYFVQLCSALE 120

Query: 490 HMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLS---FWNEIAMAEMAATSKKLSSAPSA- 545
           HMH     + H  +  + V +T     KL DL    F++    A  +        +P   
Sbjct: 121 HMHSRR--VMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERI 178

Query: 546 -----SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF 600
                + +S++++ G LL+EM   + P+  D  +L        S  + ++Q   P L S 
Sbjct: 179 HENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNL-------YSLCKKIEQCDYPPLPS- 230

Query: 601 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG 638
            +   E L +L+  C+  DPEKRP +  +  + + +  
Sbjct: 231 -DHYSEELRQLVNMCINPDPEKRPDITYVYDVAKRMHA 267

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 63.1 bits (153), Expect = 7e-11
 Identities = 76/303 (25%), Positives = 125/303 (41%), Gaps = 56/303 (18%)

Query: 366 ELEAACEDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLE-VQFRKKID 423
           EL  +   F   +G    G +YKG L   G++ A   V++ + KD     +  +F+++  
Sbjct: 1   ELPLSAVRFMEELGECAFGKIYKGHLYLPGMDHA-QLVAIKTLKDINNPQQWGEFQQEAS 59

Query: 424 TLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWG-------- 475
            +++++H N V L+G   +E+P    M+FEY   G L E + I  S H D G        
Sbjct: 60  LMAELHHPNIVCLLGVVTQEQPVC--MLFEYLNQGDLHEFL-IMRSPHSDVGCSSDEDGT 116

Query: 476 ------------MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF 523
                       + ++IA GM Y   H         H  L +  + + E    K+SDL  
Sbjct: 117 VKSSLDHGDFLHIAIQIAAGMEYLSSHF------FVHKDLAARNILIGEQLHVKISDLGL 170

Query: 524 WNEIAMAEM-AATSKKLSS----APSA------SLESNVYNFGVLLFEMVT-GRLPYLVD 571
             EI  A+      K L       P A      S +S++++FGV+L+E+ + G  PY   
Sbjct: 171 SREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYY-- 228

Query: 572 NGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA 631
                       S  + ++      L    E+    +  L+  C +  P +RP  +DI  
Sbjct: 229 ----------GFSNQEVIEMVRKRQLLPCSEDCPPRMYSLMTECWQEGPSRRPRFKDIHT 278

Query: 632 ILR 634
            LR
Sbjct: 279 RLR 281

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 65/284 (22%), Positives = 108/284 (38%), Gaps = 47/284 (16%)

Query: 378 IGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 437
           IG+   G V  G    G+  A   V    A   P   ++ F +++    ++NH N +  +
Sbjct: 3   IGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDE-QLLFLQEVQPYRELNHPNVLQCL 61

Query: 438 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHL----DWGMRLRIAMGMAYCLEHMHQ 493
           G C E  P+  ++V E+ P G L  ++       +       +  R+A  +A  L  +HQ
Sbjct: 62  GQCIESIPY--LLVLEFCPLGDLKNYLR-SNRGMVAQMAQKDVLQRMACEVASGLLWLHQ 118

Query: 494 LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLS-----SAPSASLE 548
            +    H+ L      LT D + K+ D     E    +   T    +      AP     
Sbjct: 119 AD--FIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYITKDCHAVPLRWLAPELVEI 176

Query: 549 -------------SNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 594
                        SN+++ GV ++E+ T    PY              LS  Q L+Q V 
Sbjct: 177 RGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPY------------PDLSDEQVLKQVVR 224

Query: 595 PTLSSFDEEQLE-TLG----ELIKSCVRADPEKRPTMRDIAAIL 633
                  + QL+        E+++ C   DPE RPT  ++  +L
Sbjct: 225 EQDIKLPKPQLDLKYSDRWYEVMQFC-WLDPETRPTAEEVHELL 267

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 61.9 bits (150), Expect = 2e-10
 Identities = 72/275 (26%), Positives = 121/275 (44%), Gaps = 46/275 (16%)

Query: 378 IGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 437
           +G+   G V+ GT +   ++AV ++   +    P++    F ++   + K+ H   V L 
Sbjct: 14  LGNGQFGEVWMGTWNGNTKVAVKTLKPGTMS--PES----FLEEAQIMKKLRHDKLVQLY 67

Query: 438 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRLRIAMGMAYCLEHMHQ 493
               EE  +   +V EY   G+L + +   E   L       M  ++A GMAY +E M+ 
Sbjct: 68  AVVSEEPIY---IVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAY-IERMNY 123

Query: 494 LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAA-TSKKLS---SAPSASL-- 547
           +     H  L S+ + + +    K++D      I   E  A    K     +AP A+L  
Sbjct: 124 I-----HRDLRSANILVGDGLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG 178

Query: 548 ----ESNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF 600
               +S+V++FG+LL E+VT GR+PY  + +   LE     Y     P  Q    +L   
Sbjct: 179 RFTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVERGYR---MPCPQDCPISLH-- 233

Query: 601 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
                    EL+  C + DPE+RPT   + + L +
Sbjct: 234 ---------ELMLQCWKKDPEERPTFEYLQSFLED 259

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 72/287 (25%), Positives = 108/287 (37%), Gaps = 61/287 (21%)

Query: 378 IGSSPIGTVYKGTL--SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 435
           +G    G V +G    S G  I VA   + S  D   ++   F K+   +  ++H+N + 
Sbjct: 3   LGDGSFGVVRRGEWSTSGGKVIPVAVKCLKS--DKLSDIMDDFLKEAAIMHSLDHENLIR 60

Query: 436 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD----WGMRLRIAMGMAYCLEHM 491
           L G          MMV E AP G+L + +      H          ++IA GM Y LE  
Sbjct: 61  LYGVVLTH---PLMMVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRY-LESK 116

Query: 492 HQLNPPIAHNYLNSSAVHLTEDYAAKLSD---------------LSFWNEIAMAEMAATS 536
                   H  L +  + L  D   K+ D               +    ++  A  A  S
Sbjct: 117 R-----FIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPES 171

Query: 537 KKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP 595
            +  +   A   S+V+ FGV L+EM T G  P          WA   LSG Q L++ +D 
Sbjct: 172 LRTRTFSHA---SDVWMFGVTLWEMFTYGEEP----------WAG--LSGSQILKK-IDK 215

Query: 596 TLSSFDEEQLET-------LGELIKSCVRADPEKRPTMRDIAAILRE 635
                  E+LE        +  ++  C   +P  RPT   +   L E
Sbjct: 216 EG-----ERLERPEACPQDIYNVMLQCWAHNPADRPTFAALREFLPE 257

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 67/271 (24%), Positives = 113/271 (41%), Gaps = 43/271 (15%)

Query: 378 IGSSPIGTVYK-GTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNL 436
           +G    G+VYK   LS+    A+  V + S     +   V    +I  L+ VNH N   +
Sbjct: 8   LGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVN---EIRILASVNHPN---I 61

Query: 437 IGFCEEEEPFTRM-MVFEYAPNGTLFEHIHIKES------EHLDWGMRLRIAMGMAYCLE 489
           I + E      ++ +V EYAP G L + I  ++       E   W + +++  G    L+
Sbjct: 62  ISYKEAFLDGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRG----LQ 117

Query: 490 HMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAAT--SKKLSSAPSA-- 545
            +H+    I H  L S+ + L  +   K+ DL   +++    MA T        AP    
Sbjct: 118 ALHEQK--ILHRDLKSANILLVANDLVKIGDLGI-SKVLKKNMAKTQIGTPHYMAPEVWK 174

Query: 546 ----SLESNVYNFGVLLFEMVTGRLPYLVDNG-SLEDWAADYLSGVQPLQQFVDPTLSSF 600
               S +S++++ G LL+EM T   P+      S++D       G  P      P    +
Sbjct: 175 GRPYSYKSDIWSLGCLLYEMATFAPPF---EARSMQDLRYKVQRGKYP------PIPPIY 225

Query: 601 DEEQLETLGELIKSCVRADPEKRPTMRDIAA 631
            ++    L   I+S ++  P+ RP    I A
Sbjct: 226 SQD----LQNFIRSMLQVKPKLRPNCDKILA 252

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 61.0 bits (148), Expect = 4e-10
 Identities = 67/284 (23%), Positives = 122/284 (42%), Gaps = 39/284 (13%)

Query: 377 VIGSSPIGTVYKGTLS--NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV 434
           ++G    G+V +G LS  +G ++ VA  ++         +E +F  +   +   +H N +
Sbjct: 6   ILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIE-EFLSEAACMKDFDHPNVM 64

Query: 435 NLIGFC----EEEEPFTRMMVFEYAPNGTLFEHIHIKE----SEHLDWGMRLRIAMGMAY 486
            LIG C      ++    M++  +  +G L   +         E L     L+  + +A 
Sbjct: 65  KLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIAL 124

Query: 487 CLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDL---------SFWNEIAMAEMAATSK 537
            +E++   N    H  L +    L ED    ++D           ++ +  +A+M     
Sbjct: 125 GMEYLSNRN--FIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWI 182

Query: 538 KLSSAPSA--SLESNVYNFGVLLFEMVT-GRLPYL-VDNGSLEDWAADYLSGVQPLQQFV 593
            + S      + +S+V+ FGV ++E+ T G+ PY  V+N  +     DYL     L+Q  
Sbjct: 183 AIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVENHEI----YDYLRHGNRLKQ-- 236

Query: 594 DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT 637
                   E+ L+ L +L+ SC RADP+ RPT   +  +L  I 
Sbjct: 237 -------PEDCLDELYDLMYSCWRADPKDRPTFTKLREVLENIL 273

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 60.1 bits (146), Expect = 5e-10
 Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 25/223 (11%)

Query: 421 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRI 480
           +I  LS + H N +       ++   T ++  EYA  GTL++ I  ++ +  +  M L  
Sbjct: 49  EIVILSLLQHPNIIAYYNHFMDDN--TLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWY 106

Query: 481 AMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW----NEIAMAEMAA-- 534
              +   + ++H+    I H  + +  + LT+    KL D        +E +MAE     
Sbjct: 107 LFQIVSAVSYIHKAG--ILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAETVVGT 164

Query: 535 ---TSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQ 591
               S +L      + +S+++  G +L+E++T +  +   N                +Q 
Sbjct: 165 PYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATNPLNLVVKI--------VQG 216

Query: 592 FVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR 634
              P +S +  E    L  L+ S ++ DPEKRPT  ++     
Sbjct: 217 NYTPVVSVYSSE----LISLVHSLLQQDPEKRPTADEVLDQPL 255

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 62.2 bits (151), Expect = 6e-10
 Identities = 65/273 (23%), Positives = 115/273 (42%), Gaps = 35/273 (12%)

Query: 376 NVIGSSPIGTVYKG-TLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV 434
           NVI     G  YKG ++ NG++  V  ++       P +      K       + H N V
Sbjct: 696 NVISRGKKGASYKGKSIKNGMQFVVKEIN--DVNSIPSSEIADMGK-------LQHPNIV 746

Query: 435 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMH-Q 493
            LIG C  E+     ++ EY     L E +      +L W  R +IA+G+A  L  +H +
Sbjct: 747 KLIGLCRSEK--GAYLIHEYIEGKNLSEVL-----RNLSWERRRKIAIGIAKALRFLHCR 799

Query: 494 LNPPIAHNYLNSSAVHLTEDYAAKLS-------DLSFWNEIAMAEMAATSKKLSSAPSAS 546
            +P +    L+   + +       L               I+ A +A  +++        
Sbjct: 800 CSPAVVVGNLSPEKIIIDGKDEPHLRLSLPGLLCTDTKCFISSAYVAPETRETKDITE-- 857

Query: 547 LESNVYNFGVLLFEMVTGRLPYLVD---NGSLEDWAADYLSGVQPLQQFVDPTLS---SF 600
            +S++Y FG++L E++TG+ P   +   +GS+ +WA    S    L  ++DP++    S 
Sbjct: 858 -KSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDCH-LDMWIDPSIRGDVSV 915

Query: 601 DEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 633
           ++ ++  +  L   C   DP  RP   D+   L
Sbjct: 916 NQNEIVEVMNLALHCTATDPTARPCANDVLKTL 948

Length = 968

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 60.1 bits (146), Expect = 7e-10
 Identities = 71/287 (24%), Positives = 125/287 (43%), Gaps = 44/287 (15%)

Query: 362 LKRSELEAACEDFSNVIGSSPIGTVYKGT---LSNGVEIAVASVSVASAKDWPKNLEVQF 418
           LK +ELE        V+GS   GTVYKG        V+I VA + V   +  PK  + + 
Sbjct: 4   LKETELE-----KIKVLGSGAFGTVYKGVWIPEGEKVKIPVA-IKVLREETSPKANK-EI 56

Query: 419 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH-----IKESEHLD 473
             +   ++ V+H + V L+G C         ++ +  P G L +++      I     L+
Sbjct: 57  LDEAYVMASVDHPHVVRLLGICLSS---QVQLITQLMPLGCLLDYVRNHKDNIGSQYLLN 113

Query: 474 WGMRLRIAMGMAYCLEHMHQLNPPI-AHNYL--NSSAVHLTEDYAAKLSDLSFWNEIAMA 530
           W   ++IA GM+Y LE    ++  + A N L      V +T+   AKL D+    +   A
Sbjct: 114 WC--VQIAKGMSY-LEEKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVD--EKEYHA 168

Query: 531 EMAATSKKLSSAPSA-----SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLS 584
           E      K  +  S      + +S+V+++GV ++E++T G  PY          A +   
Sbjct: 169 EGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIP------AVEIPD 222

Query: 585 GVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA 631
            ++  ++   P + + D      +  ++  C   D E RPT +++  
Sbjct: 223 LLEKGERLPQPPICTID------VYMVLVKCWMIDAESRPTFKELIN 263

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 59.6 bits (144), Expect = 8e-10
 Identities = 69/274 (25%), Positives = 118/274 (43%), Gaps = 44/274 (16%)

Query: 378 IGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNL 436
           IG    G V+ G L ++   +AV S      +  P +L+ +F ++   L + +H N V L
Sbjct: 3   IGRGNFGEVFSGRLRADNTPVAVKSCR----ETLPPDLKAKFLQEARILKQYSHPNIVRL 58

Query: 437 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRI----AMGMAYCLEHMH 492
           IG C +++P    +V E    G     +   E   L     +++    A GM Y LE  H
Sbjct: 59  IGVCTQKQPI--YIVMELVQGGDFLTFLR-TEGPRLKVKELIQMVENAAAGMEY-LESKH 114

Query: 493 QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATS--KKLS---SAPSA-- 545
            +     H  L +    +TE    K+SD     E      A+T   K++    +AP A  
Sbjct: 115 CI-----HRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPVKWTAPEALN 169

Query: 546 ----SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF 600
               S ES+V++FG+LL+E  + G +PY     +L +         Q  ++ ++  +   
Sbjct: 170 YGRYSSESDVWSFGILLWEAFSLGAVPY----ANLSN---------QQTREAIEQGVRLP 216

Query: 601 DEEQL-ETLGELIKSCVRADPEKRPTMRDIAAIL 633
             E   + +  L++ C   DP +RP+   +   L
Sbjct: 217 CPELCPDAVYRLMERCWEYDPGQRPSFSTVHQEL 250

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 58.9 bits (142), Expect = 2e-09
 Identities = 74/276 (26%), Positives = 113/276 (40%), Gaps = 44/276 (15%)

Query: 378 IGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN- 435
           IG      VY+ T L +   +A+  V +    D     +    K+ID L ++NH N +  
Sbjct: 10  IGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCV--KEIDLLKQLNHPNVIKY 67

Query: 436 LIGFCEEEEPFTRMMVFEYAPNGTLFEHI-HIKESEHLD-----WGMRLRIAMGMAYCLE 489
           L  F E+ E     +V E A  G L + I + K+ + L      W    +  + +   +E
Sbjct: 68  LDSFIEDNE---LNIVLELADAGDLSQMIKYFKKQKRLIPERTVW----KYFVQLCSAVE 120

Query: 490 HMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAP----SA 545
           HMH     + H  +  + V +T     KL DL      +    AA S  L   P      
Sbjct: 121 HMHSRR--VMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHS--LVGTPYYMSPE 176

Query: 546 SLESNVYNF-------GVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS 598
            +  N YNF       G LL+EM   + P+  D  +L        S  Q ++Q   P L 
Sbjct: 177 RIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNL-------FSLCQKIEQCDYPPLP 229

Query: 599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR 634
           +  E   E L EL+  C+  DP++RP   DI  + +
Sbjct: 230 T--EHYSEKLRELVSMCIYPDPDQRP---DIGYVHQ 260

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 75/287 (26%), Positives = 121/287 (42%), Gaps = 45/287 (15%)

Query: 376 NVIGSSPIGTVYKGTLSN--GVEIAVASVSVASAKDWPKNLE-VQFRKKIDTLSKVNHKN 432
           N +GS   G VY+GT ++  G       V+V + +    + E  +F K+   +S  NH N
Sbjct: 1   NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPN 60

Query: 433 FVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH-----------IKESEHLDWGMRLRIA 481
            V L+G C   EP   +M  E    G L  ++            +   E LD  + L +A
Sbjct: 61  IVKLLGVCLLNEPQYIIM--ELMEGGDLLSYLRDARVERFGPPLLTLKELLD--ICLDVA 116

Query: 482 MGMAYCLEHMHQLNPPIA-HNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM--AATSKK 538
            G  Y LE MH ++  +A  N L S   +   D   K+ D     +I  ++         
Sbjct: 117 KGCVY-LEQMHFIHRDLAARNCLVSEKGY-DADRVVKIGDFGLARDIYKSDYYRKEGEGL 174

Query: 539 LS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQP 588
           L     AP +      + +S+V++FGVL++E++T G+ PY   N        + L  V  
Sbjct: 175 LPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNN------QEVLQHVTA 228

Query: 589 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
             +   P          + + +L+ +C   DP +RPT   I  IL+ 
Sbjct: 229 GGRLQKPENCP------DKIYQLMTNCWAQDPSERPTFDRIQEILQN 269

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 60.2 bits (146), Expect = 3e-09
 Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 10/123 (8%)

Query: 62  PCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELE 121
           P S F ++    K+++L+L D  L G +   +  L +++ + L +N+F+G IP     L 
Sbjct: 277 PPSIFSLQ----KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLP 332

Query: 122 ELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSL------SPEIYKLQVLSESQ 175
            L+VL    N FSG +P +LG +++LT+L L  N+  G +      S  ++KL + S S 
Sbjct: 333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL 392

Query: 176 VDE 178
             E
Sbjct: 393 EGE 395

Length = 968

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 57.6 bits (139), Expect = 4e-09
 Identities = 63/276 (22%), Positives = 107/276 (38%), Gaps = 52/276 (18%)

Query: 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSV-ASAKDWPKNLEVQFRKKIDTLSKVNHKNFV 434
            V+G    GTVY G  + G  IAV  V +  S     +    + ++++D L  + H N V
Sbjct: 6   EVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIV 65

Query: 435 NLIGFCEEEEPFTRMMVFEYAPNGT----------LFEHIHIKESEHLDWGMRLRIAMGM 484
             +G C ++   +  M  E+ P G+          L E +  K ++        +I  G+
Sbjct: 66  QYLGTCLDDNTISIFM--EFVPGGSISSILNRFGPLPEPVFCKYTK--------QILDGV 115

Query: 485 AYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAAT-SKKLSS-- 541
           AY    +H     + H  +  + V L  +   KL D      +A   +  T S  L S  
Sbjct: 116 AY----LHNNC--VVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMH 169

Query: 542 ------APSASLE------SNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL 589
                 AP    E      S++++ G  +FEM TG+ P      S++  AA +  G    
Sbjct: 170 GTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPL----ASMDRLAAMFYIGAH-- 223

Query: 590 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT 625
                  +    +       + + SC+  D  +RP+
Sbjct: 224 ----RGLMPRLPDSFSAAAIDFVTSCLTRDQHERPS 255

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 57.5 bits (139), Expect = 4e-09
 Identities = 61/276 (22%), Positives = 110/276 (39%), Gaps = 46/276 (16%)

Query: 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV 434
           N IG    G V+K    ++    A+  + ++      +   +    +   L+K++    +
Sbjct: 6   NKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAI---DEARVLAKLDSSYII 62

Query: 435 NLI-GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE----SEHLDWGMRLRIAMGMAYCLE 489
                F ++ +     +V EYA NG L + + ++      E   W   ++I +G    L 
Sbjct: 63  RYYESFLDKGKLN---IVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLG----LA 115

Query: 490 HMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW-----NEIAMAEMAAT----SKKLS 540
           H+H  +  I H  + S  + L      K+ DL        N      +  T    S +L 
Sbjct: 116 HLH--SKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFANTIVGTPYYLSPELC 173

Query: 541 SAPSASLESNVYNFGVLLFEMVTGRLPYLVDN-GSLEDWAADYLSGV-QPLQQFVDPTLS 598
                + +S+V+  GV+L+E  TG+ P+  +N G+L       + GV  P+ Q     L+
Sbjct: 174 EDKPYNEKSDVWALGVVLYECCTGKHPFDANNQGAL---ILKIIRGVFPPVSQMYSQQLA 230

Query: 599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR 634
                      +LI  C+  D  +RP   D   +LR
Sbjct: 231 -----------QLIDQCLTKDYRQRP---DTFQLLR 252

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 56.7 bits (137), Expect = 7e-09
 Identities = 76/285 (26%), Positives = 120/285 (42%), Gaps = 46/285 (16%)

Query: 376 NVIGSSPIGTVYKGTL--SNGVEIAVASVSVASAKDWPKNLEV-QFRKKIDTLSKVNHKN 432
            VIG    G VY GTL  S+G +I  A  S+    D     EV QF K+   +   +H N
Sbjct: 1   RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLE---EVEQFLKEGIIMKDFSHPN 57

Query: 433 FVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD----WGMRLRIAMGMAYCL 488
            ++L+G C   E  + ++V  Y  +G L   I   E+ +       G  L++A GM Y  
Sbjct: 58  VLSLLGICLPSEG-SPLVVLPYMKHGDLRNFIR-SETHNPTVKDLIGFGLQVAKGMEYLA 115

Query: 489 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKK---------- 538
                      H  L +    L E +  K++D     +I   E  +              
Sbjct: 116 SK------KFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWM 169

Query: 539 -LSSAPSA--SLESNVYNFGVLLFEMVT-GRLPYL-VDNGSLEDWAADYLSGVQPLQQFV 593
            L S  +   + +S+V++FGVLL+E++T G  PY  VD+  +  +       +QP +   
Sbjct: 170 ALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVDSFDITVYLLQGRRLLQP-EYCP 228

Query: 594 DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG 638
           DP            L E++ SC    PE RPT  ++ + + +I  
Sbjct: 229 DP------------LYEVMLSCWHPKPEMRPTFSELVSRIEQIFS 261

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 56.7 bits (137), Expect = 7e-09
 Identities = 62/275 (22%), Positives = 111/275 (40%), Gaps = 45/275 (16%)

Query: 378 IGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 437
           +GS   G V+ G     +++A+  +   +        E  F ++   + K++H N V L 
Sbjct: 12  LGSGQFGVVHLGKWRGKIDVAIKMIREGAMS------EDDFIEEAKVMMKLSHPNLVQLY 65

Query: 438 GFCEEEEPFTRMMVFEYAPNGTLF----EHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ 493
           G C ++ P    +V EY  NG L     E      +E L   M   +   M Y   +   
Sbjct: 66  GVCTKQRPI--FIVTEYMANGCLLNYLRERKGKLGTEWL-LDMCSDVCEAMEYLESNGFI 122

Query: 494 LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-MAATSKKLS---SAPSA---- 545
                A N L      + ED   K+SD      +   +  ++   K     + P      
Sbjct: 123 HRDLAARNCL------VGEDNVVKVSDFGLARYVLDDQYTSSQGTKFPVKWAPPEVFDYS 176

Query: 546 --SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE 602
             S +S+V++FGVL++E+ + G++PY  +  S  +      +G + L +   P L+    
Sbjct: 177 RFSSKSDVWSFGVLMWEVFSEGKMPY--ERFSNSEVVESVSAGYR-LYR---PKLAP--- 227

Query: 603 EQLETLGELIKSCVRADPEKRPTMRDIAAILREIT 637
                +  ++ SC    PE RP  +    +L ++T
Sbjct: 228 ---TEVYTIMYSCWHEKPEDRPAFK---KLLSQLT 256

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 56.8 bits (137), Expect = 8e-09
 Identities = 66/276 (23%), Positives = 124/276 (44%), Gaps = 48/276 (17%)

Query: 378 IGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 437
           +G+   G V+ G  +   ++A+ S+   S    P+     F  + + + ++ H   V L 
Sbjct: 14  LGAGQFGEVWMGYYNGHTKVAIKSLKQGSMS--PE----AFLAEANLMKQLQHPRLVRLY 67

Query: 438 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWG----MRLRIAMGMAYCLEHMHQ 493
               +E  +   ++ EY  NG+L + +   E   L       M  +IA GMA+ +E  + 
Sbjct: 68  AVVTQEPIY---IITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAF-IERKNY 123

Query: 494 LNPPIAHNYLNSSAVHLTEDYAAKLSDLSF-----WNEIAMAEMAATSKKLSSAPSA--- 545
           +     H  L ++ + ++E    K++D         NE    E A    K + AP A   
Sbjct: 124 I-----HRDLRAANILVSETLCCKIADFGLARLIEDNEYTAREGAKFPIKWT-APEAINY 177

Query: 546 ---SLESNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAADYLSGVQPLQQFVDPTLSS 599
              +++S+V++FG+LL E+VT GR+PY  + +   +++    Y    +P           
Sbjct: 178 GTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNPEVIQNLERGY-RMPRP----------- 225

Query: 600 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
             +   E L EL++ C +  PE+RPT   + ++L +
Sbjct: 226 --DNCPEELYELMRLCWKEKPEERPTFEYLRSVLED 259

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 28 LNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECS 71
          LND+  ALL  +  +  DP GAL+SW    + ++PCSW GV C 
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNP--SSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 53/222 (23%), Positives = 89/222 (40%), Gaps = 29/222 (13%)

Query: 421 KIDTLSKVNHKNFVNLI-GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLR 479
           +   L  ++H N +     F E++     M+V EYAP GTL E+I  + +  LD    L 
Sbjct: 49  ECQVLKLLSHPNIIEYYENFLEDKA---LMIVMEYAPGGTLAEYIQKRCNSLLDEDTILH 105

Query: 480 IAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE-DYAAKLSDLSFWNEIAMAEMAAT--- 535
             + +   L H+H     I H  L +  + L +     K+ D      ++    A T   
Sbjct: 106 FFVQILLALHHVHTKL--ILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSKAYTVVG 163

Query: 536 -----SKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-PL 589
                S +L      + +S+++  G +L+E+ +  L    +  +L       +SG   P+
Sbjct: 164 TPCYISPELCEGKPYNQKSDIWALGCVLYELAS--LKRAFEAANLPALVLKIMSGTFAPI 221

Query: 590 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA 631
                P L            +LI S +  DP KRP +  I A
Sbjct: 222 SDRYSPDLR-----------QLILSMLNLDPSKRPQLSQIMA 252

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 64/269 (23%), Positives = 121/269 (44%), Gaps = 42/269 (15%)

Query: 377 VIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNHKNFVN 435
           +IG    G V +G  + G ++AV ++          ++  Q F ++   ++K++HKN V 
Sbjct: 13  IIGEGEFGAVLQGEYT-GQKVAVKNIKC--------DVTAQAFLEETAVMTKLHHKNLVR 63

Query: 436 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLN 495
           L+G       +   +V E    G L   +  +    +     L+ ++ +A  +E++   +
Sbjct: 64  LLGVILHNGLY---IVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLE--S 118

Query: 496 PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-MAATSKKLS---SAPSA------ 545
             + H  L +  + ++ED  AK+SD      +A    M   + KL    +AP A      
Sbjct: 119 KKLVHRDLAARNILVSEDGVAKVSDFG----LARVGSMGVDNSKLPVKWTAPEALKHKKF 174

Query: 546 SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ 604
           S +S+V+++GVLL+E+ + GR PY     SL++       G +     ++P      E  
Sbjct: 175 SSKSDVWSYGVLLWEVFSYGRAPY--PKMSLKEVKECVEKGYR-----MEPP-----EGC 222

Query: 605 LETLGELIKSCVRADPEKRPTMRDIAAIL 633
              +  L+ SC   +P+KRP+   +   L
Sbjct: 223 PADVYVLMTSCWETEPKKRPSFHKLREKL 251

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 73/285 (25%), Positives = 108/285 (37%), Gaps = 58/285 (20%)

Query: 381 SPIGTVYKGTLSNGVEIAVASVSVAS-AKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGF 439
                  K    N    A   V+V     D   N    F K++  LS+++  N   L+G 
Sbjct: 28  GLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIARLLGV 87

Query: 440 CEEEEPFTRMMVFEYAPNGTL--FEHIHIKESEHLDWG-----------MRLRIAMGMAY 486
           C  + P    M+ EY  NG L  F   H+ E+  L              M  +IA GM Y
Sbjct: 88  CTVDPPL--CMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRY 145

Query: 487 CLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-----------AMAE---M 532
            LE    LN    H  L +    + ++Y  K++D      +           A      M
Sbjct: 146 -LE---SLN--FVHRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWM 199

Query: 533 AATS---KKLSSAPSASLESNVYNFGVLLFEMVT--GRLPY--LVDNGSLEDWAADYLSG 585
           A  S    K ++       S+V+ FGV L+E++T     PY  L D   +E+  A +   
Sbjct: 200 AWESVLLGKFTTK------SDVWAFGVTLWEILTLCREQPYEHLTDQQVIEN--AGHFFR 251

Query: 586 VQPLQQFVD-PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
               Q ++  P          + + EL+  C R D E RPT R+I
Sbjct: 252 DDGRQIYLPRPPNCP------KDIYELMLECWRRDEEDRPTFREI 290

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 55.2 bits (134), Expect = 2e-08
 Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 35/167 (20%)

Query: 425 LSKVNHKNFVNLI-GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--SEHLDWGMRLRIA 481
           LS++NH   V L   F  EE+ +   +V EYAP G LF H+  +   SE      R   A
Sbjct: 47  LSRINHPFIVKLHYAFQTEEKLY---LVLEYAPGGELFSHLSKEGRFSEER---ARFYAA 100

Query: 482 -MGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLS 540
            + +A  LE++H L   I +  L    + L  D   KL+D          E+++   + +
Sbjct: 101 EIVLA--LEYLHSLG--IIYRDLKPENILLDADGHIKLTDFGLA-----KELSSEGSRTN 151

Query: 541 S--------APSASLESNVYN-------FGVLLFEMVTGRLPYLVDN 572
           +        AP   L    Y         GVLL+EM+TG+ P+  ++
Sbjct: 152 TFCGTPEYLAPEV-LLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAED 197

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|165291 PHA02988, PHA02988, hypothetical protein; Provisional

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 54/266 (20%), Positives = 116/266 (43%), Gaps = 51/266 (19%)

Query: 386 VYKGTLSNGVEIAVASVSVASAKDWPKNLEV---QFRKKIDTLSKVNHKNFVNLIGF-CE 441
           +YKG  +N        V + + K + K  +V       +I  L +++  N + + GF  +
Sbjct: 36  IYKGIFNN------KEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIID 89

Query: 442 EEEPFTRM-MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIA 499
             +   R+ ++ EY   G L E +  ++   L +  +L +A+     L ++++  N P  
Sbjct: 90  IVDDLPRLSLILEYCTRGYLREVLDKEKD--LSFKTKLDMAIDCCKGLYNLYKYTNKP-- 145

Query: 500 HNYLNSSAVHLTEDYAAK---------LSDLSFWNEIAMAEMAATSKKLSSA--PSASLE 548
           +  L S +  +TE+Y  K         LS   F   +    M   S K+ +      +++
Sbjct: 146 YKNLTSVSFLVTENYKLKIICHGLEKILSSPPF-KNVNF--MVYFSYKMLNDIFSEYTIK 202

Query: 549 SNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLET- 607
            ++Y+ GV+L+E+ TG++P+  +N                 ++  D  ++  +  +L   
Sbjct: 203 DDIYSLGVVLWEIFTGKIPF--EN-------LTT-------KEIYDLIINKNNSLKLPLD 246

Query: 608 ----LGELIKSCVRADPEKRPTMRDI 629
               +  ++++C   D  KRP +++I
Sbjct: 247 CPLEIKCIVEACTSHDSIKRPNIKEI 272

Length = 283

>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

 Score = 55.4 bits (133), Expect = 3e-08
 Identities = 57/236 (24%), Positives = 103/236 (43%), Gaps = 42/236 (17%)

Query: 366 ELEAACEDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPK-NLEVQFRKKID 423
           E+  +   F   +G    G VYKG L          +V++ + KD  +  L  +F+ +  
Sbjct: 1   EINLSTVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAM 60

Query: 424 TLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWG-------- 475
             S++ H N V L+G   +E+P +  M+F Y  +  L E + +  S H D G        
Sbjct: 61  MRSRLQHPNIVCLLGVVTKEQPLS--MIFSYCSHSDLHEFL-VMRSPHSDVGSTDDDKTV 117

Query: 476 -----------MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW 524
                      +  +IA GM +   H       + H  L +  V + +    K+SDL  +
Sbjct: 118 KSTLEPADFVHIVTQIAAGMEFLSSHH------VVHKDLATRNVLVFDKLNVKISDLGLF 171

Query: 525 NEIAMAE----MAATSKKLS-SAPSA------SLESNVYNFGVLLFEMVT-GRLPY 568
            E+  A+    M  +   +   +P A      S++S+++++GV+L+E+ + G  PY
Sbjct: 172 REVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPY 227

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror2 plays important roles in skeletal and heart formation. Ror2-deficient mice show widespread bone abnormalities, ventricular defects in the heart, and respiratory dysfunction. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Ror2 is also implicated in neural development. Length = 283

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 55.3 bits (133), Expect = 3e-08
 Identities = 55/230 (23%), Positives = 100/230 (43%), Gaps = 44/230 (19%)

Query: 362 LKRSELEAACEDFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQ-FR 419
           LK +EL         ++GS   GTV+KG  +  G  I +  V++ + +D       Q   
Sbjct: 4   LKETELRKL-----KLLGSGVFGTVHKGIWIPEGDSIKIP-VAIKTIQDRSGRQTFQEIT 57

Query: 420 KKIDTLSKVNHKNFVNLIGFCEEEEPFTRM-MVFEYAPNGTLFEHIH-----IKESEHLD 473
             +  +  ++H   V L+G C    P   + +V + +P G+L +H+      +     L+
Sbjct: 58  DHMLAMGSLDHAYIVRLLGIC----PGASLQLVTQLSPLGSLLDHVRQHRDSLDPQRLLN 113

Query: 474 WGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLS----------- 522
           W   ++IA GM Y  EH       + H  L +  + L  D   +++D             
Sbjct: 114 WC--VQIAKGMYYLEEHR------MVHRNLAARNILLKSDSIVQIADFGVADLLYPDDKK 165

Query: 523 -FWNEI--AMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPY 568
            F++E    +  MA  S         + +S+V+++GV ++EM++ G  PY
Sbjct: 166 YFYSEHKTPIKWMALESILFGRY---THQSDVWSYGVTVWEMMSYGAEPY 212

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 74/287 (25%), Positives = 113/287 (39%), Gaps = 61/287 (21%)

Query: 377 VIGSSPIGTVYKGT--LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV 434
            IG    G VY+G        +IAVA V        P   E +F ++   + + +H + V
Sbjct: 13  CIGEGQFGDVYQGVYMSPENEKIAVA-VKTCKNCTSPSVRE-KFLQEAYIMRQFDHPHIV 70

Query: 435 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGM----RLRIAMGMAYCLEH 490
            LIG   E   +   +V E AP G L  ++       LD         +++  +AY LE 
Sbjct: 71  KLIGVITENPVW---IVMELAPLGELRSYLQ-VNKYSLDLASLILYSYQLSTALAY-LES 125

Query: 491 MHQLNPPIA-HNYLNSS-------------AVHLTEDYAAKLSDLSF-WNEIAMAEMAAT 535
              ++  IA  N L SS              +     Y A    L   W    MA  +  
Sbjct: 126 KRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESYYKASKGKLPIKW----MAPESIN 181

Query: 536 SKKLSSAPSASLESNVYNFGVLLFE-MVTGRLPYL-VDN----GSLEDWAADYLSGVQPL 589
            ++ +SA      S+V+ FGV ++E ++ G  P+  V N    G +E+   + L    P+
Sbjct: 182 FRRFTSA------SDVWMFGVCMWEILMLGVKPFQGVKNNDVIGRIEN--GERL----PM 229

Query: 590 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
                PTL S           L+  C   DP KRP   ++ A L +I
Sbjct: 230 PPNCPPTLYS-----------LMTKCWAYDPSKRPRFTELKAQLSDI 265

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 55.6 bits (134), Expect = 7e-08
 Identities = 35/98 (35%), Positives = 49/98 (50%)

Query: 85  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 144
           L G +  E+  +  +K I L  N+ SG IP   G L  L  LD  +NN +GP+P+ LG  
Sbjct: 200 LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259

Query: 145 HSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182
            +L  L L  N   G + P I+ LQ L    + +  LS
Sbjct: 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297

Length = 968

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 54.0 bits (130), Expect = 7e-08
 Identities = 67/290 (23%), Positives = 117/290 (40%), Gaps = 56/290 (19%)

Query: 374 FSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKV-NH 430
           F   +G+   G V + T        AV  V+V   K    + E +    ++  +S + NH
Sbjct: 39  FGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNH 98

Query: 431 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRLRIAMGMAY 486
           +N VNL+G C    P   +++ EY   G L   +  K    L          ++A GMA+
Sbjct: 99  ENIVNLLGACTIGGPI--LVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAF 156

Query: 487 -----CLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS 541
                C+           H  L +  V LT     K+ D     +I M +     K  + 
Sbjct: 157 LASKNCI-----------HRDLAARNVLLTHGKIVKICDFGLARDI-MNDSNYVVKGNAR 204

Query: 542 ------APSA------SLESNVYNFGVLLFEMVT-GRLPY---LVDNGSLEDWAADYLSG 585
                 AP +      + ES+V+++G+LL+E+ + G  PY    VD+         +   
Sbjct: 205 LPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPVDS--------KFYKL 256

Query: 586 VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
           ++   +   P  +         + +++K+C  ADP KRPT + I  ++ +
Sbjct: 257 IKEGYRMAQPEHAP------AEIYDIMKTCWDADPLKRPTFKQIVQLIGK 300

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 55.2 bits (133), Expect = 8e-08
 Identities = 30/90 (33%), Positives = 45/90 (50%)

Query: 74  KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
           +++ L L +  L G +  E+ S   + S+ L +N  SG IP  F E+  L  LD   N  
Sbjct: 500 ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559

Query: 134 SGPLPNDLGINHSLTILLLDNNDFVGSLSP 163
           SG +P +LG   SL  + + +N   GSL  
Sbjct: 560 SGEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 53.6 bits (129), Expect = 8e-08
 Identities = 67/262 (25%), Positives = 106/262 (40%), Gaps = 35/262 (13%)

Query: 378 IGSSPIGTVYKG-TLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNL 436
           +GS   G+VY+G  L +G   AV  VS+A      +    Q  ++I  LSK+ H N V  
Sbjct: 8   LGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQY 67

Query: 437 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL---RIAMGMAYCLEHMHQ 493
           +G   EE+     +  E  P G+L   +  K     +  +RL   +I +G+ Y    +H 
Sbjct: 68  LGTEREEDNLYIFL--ELVPGGSL-AKLLKKYGSFPEPVIRLYTRQILLGLEY----LHD 120

Query: 494 LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS---APSASLESN 550
            N    H  +  + + +  +   KL+D     ++ +    A S K S    AP    +  
Sbjct: 121 RN--TVHRDIKGANILVDTNGVVKLADFGMAKQV-VEFSFAKSFKGSPYWMAPEVIAQQG 177

Query: 551 VYNF-------GVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 603
            Y         G  + EM TG+ P+      LE  AA +  G       +   LS     
Sbjct: 178 GYGLAADIWSLGCTVLEMATGKPPW----SQLEGVAAVFKIGRSKELPPIPDHLS----- 228

Query: 604 QLETLGELIKSCVRADPEKRPT 625
             +   + I  C++ DP  RPT
Sbjct: 229 --DEAKDFILKCLQRDPSLRPT 248

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 53.6 bits (129), Expect = 9e-08
 Identities = 65/287 (22%), Positives = 113/287 (39%), Gaps = 62/287 (21%)

Query: 377 VIGSSPIGTVYKG-TLSNGVEIAVASVSV---ASAKDWPKNLEV--QFRKKIDTLSKVNH 430
           +IG    G VY    ++ G  +AV  V +    + +   +  ++    R +I+TL  ++H
Sbjct: 8   LIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDH 67

Query: 431 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHLDWGMRLRIAMGMAYCL 488
            N V  +GF  E       +  EY P G++   +  + +  E L      ++  G+AY  
Sbjct: 68  LNIVQYLGF--ETTEEYLSIFLEYVPGGSIGSCLRTYGRFEEQLVRFFTEQVLEGLAY-- 123

Query: 489 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLS---------------------FWNEI 527
             +H     I H  L +  + +  D   K+SD                       FW   
Sbjct: 124 --LHSKG--ILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGSVFW--- 176

Query: 528 AMA-EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV 586
            MA E+  +  +  SA     + ++++ G ++ EM  GR P+       E  AA +  G 
Sbjct: 177 -MAPEVIHSYSQGYSA-----KVDIWSLGCVVLEMFAGRRPW----SDEEAIAAMFKLGN 226

Query: 587 Q----PLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
           +    P+   V   LS      L+ L      C   +P+ RPT R++
Sbjct: 227 KRSAPPIPPDVSMNLSP---VALDFLNA----CFTINPDNRPTAREL 266

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 53.8 bits (129), Expect = 1e-07
 Identities = 71/285 (24%), Positives = 119/285 (41%), Gaps = 51/285 (17%)

Query: 374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWP-KNLEVQFRKKIDTLSKVN-H 430
           F +VIG    G V K  +  +G+ +  A   +   K++  K+    F  +++ L K+  H
Sbjct: 11  FQDVIGEGNFGQVLKARIKKDGLRMDAA---IKRMKEYASKDDHRDFAGELEVLCKLGHH 67

Query: 431 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEH 490
            N +NL+G CE        +  EYAP+G L +   +++S  L+      IA   A  L  
Sbjct: 68  PNIINLLGACEHRGYL--YLAIEYAPHGNLLD--FLRKSRVLETDPAFAIANSTASTLSS 123

Query: 491 MHQL--------------NPPIAHNYLNSSAVHLTEDYAAKLSD--LSFWNEIAMAE--- 531
              L                   H  L +  + + E+Y AK++D  LS   E+ + +   
Sbjct: 124 QQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMG 183

Query: 532 ------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLS 584
                 MA  S   S   +    S+V+++GVLL+E+V+ G  PY              L 
Sbjct: 184 RLPVRWMAIESLNYSVYTT---NSDVWSYGVLLWEIVSLGGTPYC-------GMTCAELY 233

Query: 585 GVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
              P    ++  L+  DE     + +L++ C R  P +RP+   I
Sbjct: 234 EKLPQGYRLEKPLNCDDE-----VYDLMRQCWREKPYERPSFAQI 273

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 62/288 (21%), Positives = 121/288 (42%), Gaps = 52/288 (18%)

Query: 378 IGSSPIGTVYKGTLSNGV-EIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNL 436
           +G    G V+     N + E     V+V + K+  ++    F+++ + L+ + H++ V  
Sbjct: 13  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRF 72

Query: 437 IGFCEEEEPFTRMMVFEYAPNGTL--FEHIHIKESEHLDWG---------------MRLR 479
            G C E  P   +MVFEY  +G L  F   H  +++ L  G               +  +
Sbjct: 73  YGVCTEGRPL--LMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQ 130

Query: 480 IAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM----AAT 535
           IA GM Y L  +H       H  L +    + +    K+ D     +I   +       T
Sbjct: 131 IASGMVY-LASLH-----FVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRT 184

Query: 536 SKKLSSAPSASL-------ESNVYNFGVLLFEMVT-GRLP-YLVDNGSLEDWAADYLSGV 586
              +   P  S+       ES++++FGV+L+E+ T G+ P Y + N      A + ++  
Sbjct: 185 MLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNTE----AIECITQG 240

Query: 587 QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR 634
           + L++        +          +++ C + +P++R  ++DI + L+
Sbjct: 241 RELERPRTCPPEVYA---------IMQGCWQREPQQRMVIKDIHSRLQ 279

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 52.8 bits (126), Expect = 2e-07
 Identities = 73/296 (24%), Positives = 125/296 (42%), Gaps = 62/296 (20%)

Query: 362 LKRSELEAACEDFSNVIGSSPIGTVYKGTL---SNGVEIAVASVSVASAKDWPKNLEVQF 418
           LK +EL+        V+GS   GTVYKG        V+I VA + + +    PK   V+F
Sbjct: 4   LKETELKRV-----KVLGSGAFGTVYKGIWVPEGETVKIPVA-IKILNETTGPK-ANVEF 56

Query: 419 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH-----IKESEHLD 473
             +   ++ ++H + V L+G C      T  +V +  P+G L +++H     I     L+
Sbjct: 57  MDEALIMASMDHPHLVRLLGVCLSP---TIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLN 113

Query: 474 WGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMA 533
           W   ++IA GM Y  E         A N L  S  H+      K++D        +A + 
Sbjct: 114 WC--VQIAKGMMYLEERRLVHRDLAARNVLVKSPNHV------KITDF------GLARLL 159

Query: 534 ATSKKLSSAPSASL-----------------ESNVYNFGVLLFEMVT-GRLPYLVDNGSL 575
              +K  +A    +                 +S+V+++GV ++E++T G  PY   +G  
Sbjct: 160 EGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPY---DGIP 216

Query: 576 EDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA 631
                D L   + L Q   P + + D      +  ++  C   D + RP  +++AA
Sbjct: 217 TREIPDLLEKGERLPQ---PPICTID------VYMVMVKCWMIDADSRPKFKELAA 263

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 63/269 (23%), Positives = 112/269 (41%), Gaps = 46/269 (17%)

Query: 378 IGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 437
           +G+   G V  G      ++A+  +   S        E +F ++   + K++H+  V L 
Sbjct: 12  LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS------EDEFIEEAKVMMKLSHEKLVQLY 65

Query: 438 GFCEEEEPFTRMMVFEYAPNGTLFEHI-----HIKESEHLDWGMRLRIAMGMAYCLEHMH 492
           G C ++ P    +V EY  NG L  ++       + S+ L+  M   +  GMAY LE   
Sbjct: 66  GVCTKQRPI--YIVTEYMSNGCLLNYLREHGKRFQPSQLLE--MCKDVCEGMAY-LES-K 119

Query: 493 QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-MAATSKKLS---SAPSA--- 545
           Q      H  L +    + +    K+SD      +   E  ++   K     S P     
Sbjct: 120 QF----IHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLLY 175

Query: 546 ---SLESNVYNFGVLLFEMVT-GRLPY-LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF 600
              S +S+V+ FGVL++E+ + G++PY   +N    +  +  L       +   P L+S 
Sbjct: 176 SKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNSETVEKVSQGL-------RLYRPHLAS- 227

Query: 601 DEEQLETLGELIKSCVRADPEKRPTMRDI 629
                E +  ++ SC     E+RPT + +
Sbjct: 228 -----EKVYAIMYSCWHEKAEERPTFQQL 251

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 54/214 (25%), Positives = 92/214 (42%), Gaps = 28/214 (13%)

Query: 378 IGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 437
           +GS   GTV KG           +V +    +    L+ +  ++ + + ++++   V +I
Sbjct: 3   LGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMI 62

Query: 438 GFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESEHLDWGMRLRIAMGMAYCLEHMHQ 493
           G CE E   + M+V E A  G L + +    H+ E    +  +  +++MGM Y  E    
Sbjct: 63  GICEAE---SWMLVMELAELGPLNKFLQKNKHVTEKNITE--LVHQVSMGMKYLEET--- 114

Query: 494 LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE---MAATSKKLS---SAPSA-- 545
                 H  L +  V L   + AK+SD      +   E    A T  K      AP    
Sbjct: 115 ---NFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWPVKWYAPECMN 171

Query: 546 ----SLESNVYNFGVLLFEMVT-GRLPYLVDNGS 574
               S +S+V++FGVL++E  + G+ PY    G+
Sbjct: 172 YYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGN 205

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. More recently, Syk expression has been detected in other cell types (including epithelial cells, vascular endothelial cells, neurons, hepatocytes, and melanocytes), suggesting a variety of biological functions in non-immune cells. Syk plays a critical role in maintaining vascular integrity and in wound healing during embryogenesis. It also regulates Vav3, which is important in osteoclast function including bone development. In breast epithelial cells, where Syk acts as a negative regulator for epidermal growth factor receptor (EGFR) signaling, loss of Syk expression is associated with abnormal proliferation during cancer development suggesting a potential role as a tumor suppressor. In mice, Syk has been shown to inhibit malignant transformation of mammary epithelial cells induced with murine mammary tumor virus (MMTV). Length = 257

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 57/258 (22%), Positives = 104/258 (40%), Gaps = 35/258 (13%)

Query: 402 VSVASAK-DWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTL 460
           V+V + K +  +     ++K+I+ L  + H+N V   G C E+      ++ EY P G+L
Sbjct: 36  VAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQLIMEYVPLGSL 95

Query: 461 FEHIHIKESEHLDWGMRL--RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKL 518
            +++  K   +L   +    +I  GMAY L   H +     H  L +  V L  D   K+
Sbjct: 96  RDYLP-KHKLNLAQLLLFAQQICEGMAY-LHSQHYI-----HRDLAARNVLLDNDRLVKI 148

Query: 519 SDLSFWNEIAMAEMAATSKKLSSAP------------SASLESNVYNFGVLLFEMVTGRL 566
            D      +         ++   +P              S  S+V++FGV L+E++T   
Sbjct: 149 GDFGLAKAVPEGHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCD 208

Query: 567 PYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL--------ETLGELIKSCVRA 618
                    E+     + G +  Q  V   +   +            + +  L+K+C   
Sbjct: 209 SKQSPPKKFEE-----MIGPKQGQMTVVRLIELLERGMRLPCPKNCPQEVYILMKNCWET 263

Query: 619 DPEKRPTMRDIAAILREI 636
           + + RPT R +  IL+E+
Sbjct: 264 EAKFRPTFRSLIPILKEM 281

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.5 bits (126), Expect = 5e-07
 Identities = 24/66 (36%), Positives = 39/66 (59%)

Query: 77  NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 136
           ++NL    + G + P + S+T ++ + L  NSF+G IPE  G+L  L +L+   N+ SG 
Sbjct: 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR 505

Query: 137 LPNDLG 142
           +P  LG
Sbjct: 506 VPAALG 511

Length = 623

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 64/289 (22%), Positives = 109/289 (37%), Gaps = 60/289 (20%)

Query: 378 IGSSPIGTVYKGTLSN------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 431
           +G    G VY+G             +A+ +V+  ++    + +E  F  +   + + N  
Sbjct: 14  LGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMR--ERIE--FLNEASVMKEFNCH 69

Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHLDWG----------MRLR 479
           + V L+G     +P   ++V E    G L  ++     E+E+              M   
Sbjct: 70  HVVRLLGVVSTGQP--TLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAE 127

Query: 480 IAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-------- 531
           IA GMAY L           H  L +    + ED   K+ D     +I   +        
Sbjct: 128 IADGMAY-LAAKK-----FVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKG 181

Query: 532 ------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLS 584
                 MA  S  L      + +S+V++FGV+L+EM T    PY    G   +    ++ 
Sbjct: 182 LLPVRWMAPES--LKDGVFTT-KSDVWSFGVVLWEMATLAEQPYQ---GLSNEEVLKFVI 235

Query: 585 GVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 633
               L     P      E   + L EL++ C + +P+ RPT  +I + L
Sbjct: 236 DGGHLDL---P------ENCPDKLLELMRMCWQYNPKMRPTFLEIVSSL 275

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.2 bits (125), Expect = 8e-07
 Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 1/115 (0%)

Query: 70  CSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFG 129
           CS G +  L L    LEG +   + +   ++ + L++NSFSG +P  F +L  +  LD  
Sbjct: 377 CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDIS 436

Query: 130 HNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA 184
           +NN  G + +      SL +L L  N F G L P+ +  + L    +   Q S A
Sbjct: 437 NNNLQGRINSRKWDMPSLQMLSLARNKFFGGL-PDSFGSKRLENLDLSRNQFSGA 490

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.4 bits (123), Expect = 1e-06
 Identities = 28/92 (30%), Positives = 44/92 (47%)

Query: 91  PEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTIL 150
           P+      ++++ L  N FSG +P   G L EL  L    N  SG +P++L     L  L
Sbjct: 469 PDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSL 528

Query: 151 LLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182
            L +N   G +     ++ VLS+  + + QLS
Sbjct: 529 DLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS 560

Length = 968

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 50.0 bits (119), Expect = 2e-06
 Identities = 66/310 (21%), Positives = 120/310 (38%), Gaps = 76/310 (24%)

Query: 377 VIGSSPIGTVYKGTLSNGVEIA----VASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNHK 431
            +G    G V K T      +       +V+V   K+   + E++    + + L +VNH 
Sbjct: 7   TLGEGEFGKVVKAT---AFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHP 63

Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIK----------------------ES 469
           + + L G C ++ P   +++ EYA  G+L   +                         + 
Sbjct: 64  HVIKLYGACSQDGPL--LLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDE 121

Query: 470 EHLDWGMRL----RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN 525
             L  G  +    +I+ GM Y  E        + H  L +  V + E    K+SD     
Sbjct: 122 RALTMGDLISFAWQISRGMQYLAEM------KLVHRDLAARNVLVAEGRKMKISDFGLSR 175

Query: 526 EIAMAEMAATSKKLSSAPSA------------SLESNVYNFGVLLFEMVT-GRLPYLVDN 572
           ++   E +   +     P              + +S+V++FGVLL+E+VT G  PY    
Sbjct: 176 DV-YEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPY---- 230

Query: 573 GSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGE----LIKSCVRADPEKRPTMRD 628
                       G+ P ++  +   + +  E+ E   E    L+ +C + +P+KRPT  D
Sbjct: 231 -----------PGIAP-ERLFNLLKTGYRMERPENCSEEMYNLMLTCWKQEPDKRPTFAD 278

Query: 629 IAAILREITG 638
           I+  L ++  
Sbjct: 279 ISKELEKMMV 288

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 62/289 (21%), Positives = 121/289 (41%), Gaps = 40/289 (13%)

Query: 366 ELEAACEDFSNVIGSSPIGTVYKGTL--SNGVEIAVASVSVASAKDWPKNLEVQFRKKID 423
           E+  +      VIG+   G V++G L      E+AVA  ++     + +     F  +  
Sbjct: 1   EIHPSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPG--YTEKQRQDFLSEAS 58

Query: 424 TLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW---GMRLRI 480
            + + +H N + L G   + +P   M++ EY  NG L +++   + E   +   GM   I
Sbjct: 59  IMGQFSHHNIIRLEGVVTKFKPA--MIITEYMENGALDKYLRDHDGEFSSYQLVGMLRGI 116

Query: 481 AMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF---WNEIAMAEMAATSK 537
           A GM Y L  M+ +     H  L +  + +  +   K+SD        +        +  
Sbjct: 117 AAGMKY-LSDMNYV-----HRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGG 170

Query: 538 KLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 587
           K+    +AP A      +  S+V++FG++++E+++ G  PY         W    +S  +
Sbjct: 171 KIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPY---------WD---MSNHE 218

Query: 588 PLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
            ++   D        +    + +L+  C + D  +RP   DI  +L ++
Sbjct: 219 VMKAINDGFRLPAPMDCPSAVYQLMLQCWQQDRARRPRFVDIVNLLDKL 267

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 54/227 (23%), Positives = 100/227 (44%), Gaps = 39/227 (17%)

Query: 419 RKKIDTLSKVNHKNFVNLIGFCEE-EEPFTRMMVFEYAPNGTLFEHIH------IKESEH 471
           RK++  LS + H N V    + E  EE     +V +Y   G L++ I+        E + 
Sbjct: 47  RKEVAVLSNMKHPNIVQ---YQESFEENGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQI 103

Query: 472 LDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-AMA 530
           LDW +++ +A      L+H+H  +  I H  + S  + LT+D   KL D      + +  
Sbjct: 104 LDWFVQICLA------LKHVH--DRKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTV 155

Query: 531 EMAAT--------SKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY 582
           E+A T        S ++      + +S+++  G +L+EM T  L +  + G++++     
Sbjct: 156 ELARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCT--LKHAFEAGNMKNLVLKI 213

Query: 583 LSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
           + G  P      P  S +  +    L  L+    + +P  RP++  I
Sbjct: 214 IRGSYP------PVSSHYSYD----LRNLVSQLFKRNPRDRPSVNSI 250

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 48.8 bits (116), Expect = 4e-06
 Identities = 67/291 (23%), Positives = 122/291 (41%), Gaps = 55/291 (18%)

Query: 374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWP-KNLEVQFRKKIDTLSKV-NH 430
           F +VIG    G V +  +  +G+++  A   +   K++  +N    F  +++ L K+ +H
Sbjct: 6   FEDVIGEGNFGQVIRAMIKKDGLKMNAA---IKMLKEFASENDHRDFAGELEVLCKLGHH 62

Query: 431 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE---------SEH-----LDWGM 476
            N +NL+G CE        +  EYAP G L + +              EH     L    
Sbjct: 63  PNIINLLGACENRGYL--YIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQ 120

Query: 477 RLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATS 536
            L+ A  +A  ++++ +      H  L +  V + E+ A+K++D      ++  E     
Sbjct: 121 LLQFASDVATGMQYLSE--KQFIHRDLAARNVLVGENLASKIADFG----LSRGEEVYVK 174

Query: 537 KKLSSAPSA------------SLESNVYNFGVLLFEMVT-GRLPYL-VDNGSLEDWAADY 582
           K +   P              + +S+V++FGVLL+E+V+ G  PY  +    L +     
Sbjct: 175 KTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTCAELYEKLPQG 234

Query: 583 LSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 633
               +P          + D+E    + EL++ C R  P +RP    I+  L
Sbjct: 235 YRMEKP---------RNCDDE----VYELMRQCWRDRPYERPPFAQISVQL 272

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 48.5 bits (115), Expect = 4e-06
 Identities = 62/271 (22%), Positives = 116/271 (42%), Gaps = 55/271 (20%)

Query: 402 VSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTL- 460
           V+V + KD   N    F ++ + L+ + H++ V   G C E +P   +MVFEY  +G L 
Sbjct: 38  VAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPL--IMVFEYMKHGDLN 95

Query: 461 -FEHIH---------------IKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLN 504
            F   H               + +S+ L   +  +IA GM Y L   H       H  L 
Sbjct: 96  KFLRAHGPDAVLMAEGNRPAELTQSQMLH--IAQQIAAGMVY-LASQH-----FVHRDLA 147

Query: 505 SSAVHLTEDYAAKLSDLSFWNEIAMAEM----AATSKKLSSAPSASL-------ESNVYN 553
           +    + E+   K+ D     ++   +       T   +   P  S+       ES+V++
Sbjct: 148 TRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWS 207

Query: 554 FGVLLFEMVT-GRLPY--LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGE 610
            GV+L+E+ T G+ P+  L +N  +E      ++  + LQ+   P          + + +
Sbjct: 208 LGVVLWEIFTYGKQPWYQLSNNEVIE-----CITQGRVLQR---PRTCP------KEVYD 253

Query: 611 LIKSCVRADPEKRPTMRDIAAILREITGITP 641
           L+  C + +P  R  +++I ++L+ +   +P
Sbjct: 254 LMLGCWQREPHMRLNIKEIHSLLQNLAKASP 284

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 48.9 bits (116), Expect = 5e-06
 Identities = 57/247 (23%), Positives = 100/247 (40%), Gaps = 58/247 (23%)

Query: 430 HKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR------------ 477
           HKN +NL+G C ++ P    ++ EYA  G L E++  +    +++               
Sbjct: 83  HKNIINLLGACTQDGPL--YVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFK 140

Query: 478 ------LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE 531
                  ++A GM Y        +    H  L +  V +TED   K++D     +I   +
Sbjct: 141 DLVSCAYQVARGMEYL------ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHID 194

Query: 532 M--AATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWA 579
                T+ +L     AP A      + +S+V++FGVLL+E+ T G  PY           
Sbjct: 195 YYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPY----------- 243

Query: 580 ADYLSGVQPLQQFVDPTLSSFDEEQLET----LGELIKSCVRADPEKRPTMRDIAAILRE 635
                GV P+++           ++       L  +++ C  A P +RPT + +   L  
Sbjct: 244 ----PGV-PVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDR 298

Query: 636 ITGITPD 642
           I  +T +
Sbjct: 299 ILALTSN 305

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 47.6 bits (114), Expect = 7e-06
 Identities = 67/273 (24%), Positives = 114/273 (41%), Gaps = 53/273 (19%)

Query: 374 FSNVIGSSPIGTVYKG-TLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN 432
             ++IG    G VYKG  L  G  +A+  +S+   K   + L+    ++ID L  + H N
Sbjct: 4   LGDLIGRGAFGVVYKGLNLETGDFVAIKQISLE--KIKEEALK-SIMQEIDLLKNLKHPN 60

Query: 433 FVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHLDWGMRLRIAMGMAYCLEH 490
            V  IG  E  +     ++ EYA NG+L + I       E L       +A+ +   L+ 
Sbjct: 61  IVKYIGSIETSDSL--YIILEYAENGSLRQIIKKFGPFPESL-------VAVYVYQVLQG 111

Query: 491 MHQL-NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS-------- 541
           +  L    + H  + ++ +  T+D   KL+D      +A  ++   SK  +S        
Sbjct: 112 LAYLHEQGVIHRDIKAANILTTKDGVVKLADFG----VA-TKLNDVSKDDASVVGTPYWM 166

Query: 542 APS------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFV-- 593
           AP       AS  S++++ G  + E++TG  PY              L+ +  L + V  
Sbjct: 167 APEVIEMSGASTASDIWSLGCTVIELLTGNPPYY------------DLNPMAALFRIVQD 214

Query: 594 -DPTLSSFDEEQLETLGELIKSCVRADPEKRPT 625
             P L      +L+   + +  C + DP  RPT
Sbjct: 215 DHPPLPEGISPELK---DFLMQCFQKDPNLRPT 244

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 47.6 bits (113), Expect = 9e-06
 Identities = 60/265 (22%), Positives = 109/265 (41%), Gaps = 46/265 (17%)

Query: 394 GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE 453
           G ++AV S+   S  +   +L    +K+I+ L  + H+N V   G C E+      ++ E
Sbjct: 33  GEQVAVKSLKPESGGNHIADL----KKEIEILRNLYHENIVKYKGICTEDGGNGIKLIME 88

Query: 454 YAPNGTLFEHI-----HIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAV 508
           + P+G+L E++      I   + L +   ++I  GM Y     +       H  L +  V
Sbjct: 89  FLPSGSLKEYLPRNKNKINLKQQLKYA--VQICKGMDYLGSRQY------VHRDLAARNV 140

Query: 509 HLTEDYAAKLSDLSFWNEIAMAEMAATSK-KLSS-----APSASLE------SNVYNFGV 556
            +  ++  K+ D      I   +   T K  L S     AP   ++      S+V++FGV
Sbjct: 141 LVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGV 200

Query: 557 LLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL--QQFVDPTLSSFDEEQL--------E 606
            L+E++T    Y     S       +L  + P   Q  V   +   +E +         E
Sbjct: 201 TLYELLT----YCDSESSP---MTLFLKMIGPTHGQMTVTRLVRVLEEGKRLPRPPNCPE 253

Query: 607 TLGELIKSCVRADPEKRPTMRDIAA 631
            + +L++ C    P KR T +++  
Sbjct: 254 EVYQLMRKCWEFQPSKRTTFQNLIE 278

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.3 bits (115), Expect = 1e-05
 Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 6/130 (4%)

Query: 46  PYGALTSWRSCDTENNPCSWFGVECSD-GKVVNLNLKDL---CLEGTLAPEIQSLTHIKS 101
           P G++ +  + D  NN  S  G   +D G   +L + DL    L G +   + +LT ++ 
Sbjct: 135 PRGSIPNLETLDLSNNMLS--GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192

Query: 102 IILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSL 161
           + L +N   G IP   G+++ L+ +  G+NN SG +P ++G   SL  L L  N+  G +
Sbjct: 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI 252

Query: 162 SPEIYKLQVL 171
              +  L+ L
Sbjct: 253 PSSLGNLKNL 262

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 20/60 (33%), Positives = 27/60 (45%)

Query: 98  HIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDF 157
           ++KS+ L NN  + I    F  L  L+VLD   NN +   P       SL  L L  N+ 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.9 bits (114), Expect = 2e-05
 Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 6/105 (5%)

Query: 73  GKVVNLNLKDLC---LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFG 129
           G + +LN  DL    L G +   + +L +++ + L  N  SG IP     L++L  LD  
Sbjct: 233 GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292

Query: 130 HNNFSGPLPNDLGINHSLTILLLDNNDFVGSLS---PEIYKLQVL 171
            N+ SG +P  +    +L IL L +N+F G +      + +LQVL
Sbjct: 293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL 337

Length = 968

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 59/271 (21%), Positives = 119/271 (43%), Gaps = 34/271 (12%)

Query: 374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF 433
           F   +GS   G V+ G     +++A+ +++  +        E  F ++   + K++H   
Sbjct: 8   FMKELGSGQFGVVHLGKWRAQIKVAIKAINEGAMS------EEDFIEEAKVMMKLSHPKL 61

Query: 434 VNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ 493
           V L G C +++P    +V E+  NG L  ++  ++   L   M L +   +   +E++ +
Sbjct: 62  VQLYGVCTQQKPL--YIVTEFMENGCLLNYLRQRQG-KLSKDMLLSMCQDVCEGMEYLER 118

Query: 494 LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATS-KKLS---SAPSA---- 545
            +    H  L +    ++     K+SD      +   E  ++S  K     S P      
Sbjct: 119 NS--FIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPEVFNFS 176

Query: 546 --SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE 602
             S +S+V++FGVL++E+ T G++P+  +  S      + +  +    +   P L+S   
Sbjct: 177 KYSSKSDVWSFGVLMWEVFTEGKMPF--EKKS----NYEVVEMISRGFRLYRPKLAS--- 227

Query: 603 EQLETLGELIKSCVRADPEKRPTMRDIAAIL 633
               T+ E++ SC    PE RPT  ++   +
Sbjct: 228 ---MTVYEVMYSCWHEKPEGRPTFAELLRAI 255

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 57/221 (25%), Positives = 87/221 (39%), Gaps = 38/221 (17%)

Query: 376 NVIGSSPIGTVYKGTLS----NGVEIAVASVS---VASAKDWPKNLEVQFRKKIDTLSKV 428
             +G    G VY+G       + VE+ VA  +     S +D     E  F  +   +SK 
Sbjct: 12  RALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQD-----ESDFLMEALIMSKF 66

Query: 429 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI-----HIKESEHLDWGMRLRIAMG 483
           NH+N V LIG   E  P  R ++ E    G L   +       +    L     L  A  
Sbjct: 67  NHQNIVRLIGVSFERLP--RFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARD 124

Query: 484 MA---YCLEHMHQLNPPI-AHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKL 539
           +A     LE  H ++  I A N L +          AK++D     +I  A       + 
Sbjct: 125 VAKGCKYLEENHFIHRDIAARNCLLTCK---GPGRVAKIADFGMARDIYRASYYRKGGRA 181

Query: 540 S-----SAPSASLE------SNVYNFGVLLFEMVT-GRLPY 568
                   P A L+      ++V++FGVLL+E+ + G +PY
Sbjct: 182 MLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPY 222

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 46.1 bits (109), Expect = 3e-05
 Identities = 56/228 (24%), Positives = 94/228 (41%), Gaps = 52/228 (22%)

Query: 425 LSKVNHKNFVN--------------LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESE 470
           LS++ H N V               ++GFCE  + + ++        G L     + E++
Sbjct: 53  LSQLKHPNIVAYRESWEGEDGLLYIVMGFCEGGDLYHKLK----EQKGKL-----LPENQ 103

Query: 471 HLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-AM 529
            ++W   ++IAM + Y L   H     I H  L +  V LT     K+ DL     +   
Sbjct: 104 VVEW--FVQIAMALQY-LHEKH-----ILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQ 155

Query: 530 AEMAAT--------SKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAAD 581
            +MA+T        S +L S    + +S+V+  G  ++EM T  L +  +   +      
Sbjct: 156 CDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMAT--LKHAFNAKDMNSLVYR 213

Query: 582 YLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
            + G  P      P    +  E    LGELI + +   PEKRP+++ I
Sbjct: 214 IIEGKLP------PMPKDYSPE----LGELIATMLSKRPEKRPSVKSI 251

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 46.1 bits (109), Expect = 3e-05
 Identities = 67/294 (22%), Positives = 112/294 (38%), Gaps = 64/294 (21%)

Query: 358 GVPKLKRSELEAACEDFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEV 416
           G PK K +  E         IG    GTVY    ++ G E+A+  +          NL+ 
Sbjct: 15  GDPKKKYTRFEK--------IGQGASGTVYTAIDVATGQEVAIKQM----------NLQQ 56

Query: 417 QFRKK-----IDTLSKVNHKNFVN-LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESE 470
           Q +K+     I  + +  H N VN L  +   +E +   +V EY   G+L +   +    
Sbjct: 57  QPKKELIINEILVMRENKHPNIVNYLDSYLVGDELW---VVMEYLAGGSLTD---VVTET 110

Query: 471 HLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA-- 528
            +D G    +       LE +H     + H  + S  + L  D + KL+D  F  +I   
Sbjct: 111 CMDEGQIAAVCRECLQALEFLHSNQ--VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE 168

Query: 529 -------------MAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSL 575
                        MA    T K          + ++++ G++  EMV G  PYL +N   
Sbjct: 169 QSKRSTMVGTPYWMAPEVVTRKAYGP------KVDIWSLGIMAIEMVEGEPPYLNEN--- 219

Query: 576 EDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
               A YL       +  +P      E+      + +  C+  D EKR + +++
Sbjct: 220 -PLRALYLIATNGTPELQNP------EKLSAIFRDFLNRCLEMDVEKRGSAKEL 266

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 57/234 (24%), Positives = 96/234 (41%), Gaps = 58/234 (24%)

Query: 430 HKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH----IKESEHLDW----------- 474
           HKN +NL+G C +E P    +V EYA +G L + +       E    D            
Sbjct: 75  HKNIINLLGVCTQEGPL--YVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQK 132

Query: 475 ---GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE 531
                  ++A GM + L      +    H  L +  V +TED+  K++D     +I   +
Sbjct: 133 DLVSFAYQVARGMEF-LA-----SKKCIHRDLAARNVLVTEDHVMKIADFGLARDIHHID 186

Query: 532 M--AATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWA 579
                T+ +L     AP A      + +S+V++FGVLL+E+ T G  PY           
Sbjct: 187 YYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPY----------- 235

Query: 580 ADYLSGVQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 629
                G+ P+++        +  E+     + L  L++ C    P +RPT + +
Sbjct: 236 ----PGI-PVEELFKLLKEGYRMEKPQNCTQELYHLMRDCWHEVPSQRPTFKQL 284

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.8 bits (111), Expect = 4e-05
 Identities = 27/98 (27%), Positives = 47/98 (47%)

Query: 85  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 144
             G +   + SL  ++ + L +N FSG IP+  G+   L VLD   NN +G +P  L  +
Sbjct: 320 FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS 379

Query: 145 HSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182
            +L  L+L +N   G +   +   + L   ++ +   S
Sbjct: 380 GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417

Length = 968

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 45.8 bits (108), Expect = 4e-05
 Identities = 56/241 (23%), Positives = 97/241 (40%), Gaps = 50/241 (20%)

Query: 430 HKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGM------------- 476
           HKN +NL+G C ++ P    ++ EYA  G L E++  +    +D+               
Sbjct: 77  HKNIINLLGACTQDGPL--YVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFK 134

Query: 477 -----RLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE 531
                  ++A GM Y             H  L +  V +TED   K++D     ++   +
Sbjct: 135 DLVSCAYQVARGMEYLASQ------KCIHRDLAARNVLVTEDNVMKIADFGLARDVHNID 188

Query: 532 M--AATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWA 579
                T+ +L     AP A      + +S+V++FGVLL+E+ T G  PY           
Sbjct: 189 YYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPY-------PGIP 241

Query: 580 ADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI 639
            + L  +      +D   +   E     L  +++ C  A P +RPT + +   L  +  +
Sbjct: 242 VEELFKLLKEGHRMDKPANCTHE-----LYMIMRECWHAVPSQRPTFKQLVEDLDRVLTV 296

Query: 640 T 640
           T
Sbjct: 297 T 297

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 45.4 bits (107), Expect = 4e-05
 Identities = 63/286 (22%), Positives = 120/286 (41%), Gaps = 55/286 (19%)

Query: 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWP-KNLEVQFRKKIDTLSKV-NHKN 432
           +VIG    G V K  +  +G+ +  A   +   K++  K+    F  +++ L K+ +H N
Sbjct: 1   DVIGEGNFGQVLKARIKKDGLRMDAA---IKRMKEYASKDDHRDFAGELEVLCKLGHHPN 57

Query: 433 FVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH---IKES------EH-----LDWGMRL 478
            +NL+G CE        +  EYAP+G L + +    + E+       +     L     L
Sbjct: 58  IINLLGACEHRGYL--YLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLL 115

Query: 479 RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKK 538
             A  +A  ++++ Q      H  L +  + + E+Y AK++D      ++  +     K 
Sbjct: 116 HFAADVARGMDYLSQ--KQFIHRDLAARNILVGENYVAKIADFG----LSRGQEVYVKKT 169

Query: 539 LSSAPSA------------SLESNVYNFGVLLFEMVT-GRLPYL-VDNGSLEDWAADYLS 584
           +   P              +  S+V+++GVLL+E+V+ G  PY  +    L +       
Sbjct: 170 MGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYR 229

Query: 585 GVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIA 630
             +P          + D+E    + +L++ C R  P +RP+   I 
Sbjct: 230 LEKP---------LNCDDE----VYDLMRQCWREKPYERPSFAQIL 262

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 67/297 (22%), Positives = 125/297 (42%), Gaps = 68/297 (22%)

Query: 375 SNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNHKNF 433
           S+++     G ++ G L +        V V + KD    ++V    ++   L  ++H+N 
Sbjct: 11  SDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNI 70

Query: 434 VNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWG------------MRLRIA 481
           + ++  C E+      +++ Y   G L   + +++    +              M ++IA
Sbjct: 71  LPILHVCIED-GEPPFVLYPYMNWGNL--KLFLQQCRLGEANNPQALSTQQLVHMAIQIA 127

Query: 482 MGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD--LS---F------------- 523
            GM+    ++H+    + H  + +    + E+   K++D  LS   F             
Sbjct: 128 CGMS----YLHKRG--VIHKDIAARNCVIDEELQVKITDNALSRDLFPMDYHCLGDNENR 181

Query: 524 ---WNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWA 579
              W    MA  +  +K+ SSA      S+V++FGVLL+E++T G+ PY V+    E   
Sbjct: 182 PVKW----MALESLVNKEYSSA------SDVWSFGVLLWELMTLGQTPY-VEIDPFE--M 228

Query: 580 ADYLSGVQPLQQFVD-PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
           A YL     L Q ++ P     DE     L  ++  C   DPE+RP+   +   L +
Sbjct: 229 AAYLKDGYRLAQPINCP-----DE-----LFAVMACCWALDPEERPSFSQLVQCLTD 275

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 63/287 (21%), Positives = 104/287 (36%), Gaps = 73/287 (25%)

Query: 377 VIGSSPIGTVYKG-TLSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNHKNFV 434
           V+G    G VY    LS  V IA+  +    ++       VQ   ++I   S + H+N V
Sbjct: 15  VLGKGTYGIVYAARDLSTQVRIAIKEIPERDSR------YVQPLHEEIALHSYLKHRNIV 68

Query: 435 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYC------- 487
             +G   E   F   M  E  P G+L   +  K      WG        + +        
Sbjct: 69  QYLGSDSENGFFKIFM--EQVPGGSLSALLRSK------WGPLKDNEQTIIFYTKQILEG 120

Query: 488 LEHMHQLNPPIAHNYLNSSAVHLTEDYAA--KLSDLSFWNEIAMAEMAATSKKLSS---- 541
           L+++H     I H  +    V L   Y+   K+SD              TSK+L+     
Sbjct: 121 LKYLHDNQ--IVHRDIKGDNV-LVNTYSGVVKISDF------------GTSKRLAGINPC 165

Query: 542 -----------APSA--------SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY 582
                      AP             +++++ G  + EM TG+ P+ ++ G  +  AA +
Sbjct: 166 TETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPF-IELGEPQ--AAMF 222

Query: 583 LSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
             G+  +   +  +LS             I  C   DP+KR +  D+
Sbjct: 223 KVGMFKIHPEIPESLS-------AEAKNFILRCFEPDPDKRASAHDL 262

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|173627 cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 53/246 (21%), Positives = 86/246 (34%), Gaps = 60/246 (24%)

Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR 477
           F +    +S+++HK+ V L G C  +E    +MV EY   G L   +H +E  ++    +
Sbjct: 48  FFETASLMSQLSHKHLVKLYGVCVRDE---NIMVEEYVKFGPLDVFLH-REKNNVSLHWK 103

Query: 478 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA-------AKLSDLSF------- 523
           L +A  +A  L ++      + H  +    + +             KLSD          
Sbjct: 104 LDVAKQLASALHYLEDKK--LVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVLSR 161

Query: 524 --------WNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGS 574
                   W  IA   +      L+ A       + ++FG  L E+ + G  P       
Sbjct: 162 EERVERIPW--IAPECIRNGQASLTIAA------DKWSFGTTLLEICSNGEEPL------ 207

Query: 575 LEDWAADYLSGVQPL---QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA 631
                +   S  +      Q   P            L  LI  C   DP KRP+ R    
Sbjct: 208 -----STLSSSEKERFYQDQHRLPMPDC------AELANLINQCWTYDPTKRPSFRA--- 253

Query: 632 ILREIT 637
           ILR++ 
Sbjct: 254 ILRDLN 259

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 259

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 36/161 (22%), Positives = 64/161 (39%), Gaps = 28/161 (17%)

Query: 479 RIAMGMAYCLEHMH-QLNPPIAHNYLNSSAVHLTEDYAAKLSDLS----FWNEIAMAEMA 533
           +IA+ +   L ++H +    I H  +  S + +      KL D        N +A     
Sbjct: 104 KIAVAVLKGLTYLHEKHK--IIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAKT-FV 160

Query: 534 ATSKKLS----SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL 589
            TS  ++         S++S++++ G+ L E+ TGR PY                  + L
Sbjct: 161 GTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPY-------PPENDPPDGIFELL 213

Query: 590 QQFVD---PTLSS--FDEEQLETLGELIKSCVRADPEKRPT 625
           Q  V+   P L S  F  +      + +  C+  DP +RP+
Sbjct: 214 QYIVNEPPPRLPSGKFSPD----FQDFVNLCLIKDPRERPS 250

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 45.0 bits (106), Expect = 6e-05
 Identities = 63/259 (24%), Positives = 99/259 (38%), Gaps = 50/259 (19%)

Query: 409 DWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE 468
           D  K     F K+I  +S++ + N + L+G C  ++P    M+ EY  NG L + +  +E
Sbjct: 55  DVTKTARNDFLKEIKIMSRLKNPNIIRLLGVCVSDDPLC--MITEYMENGDLNQFLSQRE 112

Query: 469 --------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY 514
                         S      M ++IA GM Y    +  LN    H  L +    +   Y
Sbjct: 113 IESTFTHANNIPSVSIANLLYMAVQIASGMKY----LASLN--FVHRDLATRNCLVGNHY 166

Query: 515 AAKLSDLSFWNEIAMAE--------------MAATSKKLSSAPSASLESNVYNFGVLLFE 560
             K++D      +   +              MA  S  L    +A   S+V+ FGV L+E
Sbjct: 167 TIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTA---SDVWAFGVTLWE 223

Query: 561 MVT--GRLPY--LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCV 616
           M T     PY  L D   +E+    + +  + +     P   S        + +L+  C 
Sbjct: 224 MFTLCKEQPYSLLSDEQVIENTGEFFRNQGRQIYLSQTPLCPS-------PVFKLMMRCW 276

Query: 617 RADPEKRPTMRDIAAILRE 635
             D + RPT   I   LRE
Sbjct: 277 SRDIKDRPTFNKIHHFLRE 295

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 44.6 bits (105), Expect = 8e-05
 Identities = 61/275 (22%), Positives = 115/275 (41%), Gaps = 46/275 (16%)

Query: 378 IGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNHKNFVNL 436
           +G+   G V+  T +   ++AV ++        P ++ V+ F  + + +  + H   V L
Sbjct: 14  LGAGQFGEVWMATYNKHTKVAVKTMK-------PGSMSVEAFLAEANVMKTLQHDKLVKL 66

Query: 437 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRLRIAMGMAYCLEHMH 492
                +E  +   ++ E+   G+L + +   E              +IA GMA+    + 
Sbjct: 67  HAVVTKEPIY---IITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAF----IE 119

Query: 493 QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW-----NEIAMAEMAATSKKLSSAPSA-- 545
           Q N    H  L ++ + ++     K++D         NE    E A    K + AP A  
Sbjct: 120 QRN--YIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWT-APEAIN 176

Query: 546 ----SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF 600
               +++S+V++FG+LL E+VT GR+PY              +S  + ++          
Sbjct: 177 FGSFTIKSDVWSFGILLMEIVTYGRIPY------------PGMSNPEVIRALERGYRMPR 224

Query: 601 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
            E   E L  ++  C +  PE+RPT   I ++L +
Sbjct: 225 PENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDD 259

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 44.9 bits (106), Expect = 8e-05
 Identities = 62/265 (23%), Positives = 103/265 (38%), Gaps = 55/265 (20%)

Query: 409 DWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTL---FEHIH 465
           D  KN    F K++  LS++   N + L+G C +E+P    M+ EY  NG L       H
Sbjct: 57  DANKNARNDFLKEVKILSRLKDPNIIRLLGVCVDEDPLC--MITEYMENGDLNQFLSSHH 114

Query: 466 IKESEH--------------LDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT 511
           + + E               + +   L +A+ +A  ++++  LN    H  L +    + 
Sbjct: 115 LDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLN--FVHRDLATRNCLVG 172

Query: 512 EDYAAKLSDLSFWNEIA-----------------MAEMAATSKKLSSAPSASLESNVYNF 554
           E+   K++D      +                  MA       K ++A      S+V+ F
Sbjct: 173 ENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTA------SDVWAF 226

Query: 555 GVLLFE--MVTGRLPY--LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGE 610
           GV L+E  M+    PY  L D   +E+    +    + +  F  P          + L E
Sbjct: 227 GVTLWEILMLCKEQPYGELTDEQVIENAGEFFRDQGRQVYLFRPPPCP-------QGLYE 279

Query: 611 LIKSCVRADPEKRPTMRDIAAILRE 635
           L+  C   D  +RP+  DI A L E
Sbjct: 280 LMLQCWSRDCRERPSFSDIHAFLTE 304

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

 Score = 44.1 bits (104), Expect = 9e-05
 Identities = 55/217 (25%), Positives = 92/217 (42%), Gaps = 22/217 (10%)

Query: 366 ELEAACEDFSNVIGSSPIGTVYKGTLS--NGVEIAVASVSV-ASAKDWPKNLEVQFRKKI 422
           EL+        ++G+   G + +G L   +  E+ VA  ++ A   D        F  + 
Sbjct: 1   ELDNKSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSD---KQRRGFLAEA 57

Query: 423 DTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAM 482
            TL + +H N V L G        T M+V EY  NG L   +   E + L  G  + +  
Sbjct: 58  LTLGQFDHSNIVRLEGVITRGN--TMMIVTEYMSNGALDSFLRKHEGQ-LVAGQLMGMLP 114

Query: 483 GMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----AEMAATSKK 538
           G+A  ++++ ++     H  L +  V +  D   K+S      E         M+  S  
Sbjct: 115 GLASGMKYLSEMG--YVHKGLAAHKVLVNSDLVCKISGFRRLQEDKSEAIYTTMSGKSPV 172

Query: 539 LSSAPSA------SLESNVYNFGVLLFE-MVTGRLPY 568
           L +AP A      S  S+V++FG++++E M  G  PY
Sbjct: 173 LWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPY 209

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). EphA10, which contains an inactive tyr kinase domain, may function to attenuate signals of co-clustered active receptors. EphA10 is mainly expressed in the testis. Ephrin/EphR interaction results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|133209 cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 56/250 (22%), Positives = 102/250 (40%), Gaps = 57/250 (22%)

Query: 412 KNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEH 471
           +N    F +    +S+++HK+ V   G C   +    +MV EY   G+L    ++K++++
Sbjct: 40  RNYSESFFEAASMMSQLSHKHLVLNYGVCVCGD--ESIMVQEYVKFGSL--DTYLKKNKN 95

Query: 472 L---DWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA 528
           L    W  +L +A  +A+ L  +      + H  + +  V L  +   K  +  F     
Sbjct: 96  LINISW--KLEVAKQLAWALHFLEDKG--LTHGNVCAKNVLLIREEDRKTGNPPFI---- 147

Query: 529 MAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYL----VDNGSLEDWAAD--- 581
                    KLS  P  S+        VL  E++  R+P++    ++N      AAD   
Sbjct: 148 ---------KLSD-PGISIT-------VLPKEILLERIPWVPPECIENPQNLSLAADKWS 190

Query: 582 --------YLSGVQPLQQFVDPTLSSFDEEQLE-------TLGELIKSCVRADPEKRPTM 626
                   +  G +PL          F E++ +        L  LI  C+  +P+ RP+ 
Sbjct: 191 FGTTLWEIFSGGDKPLSALDSQKKLQFYEDRHQLPAPKWTELANLINQCMDYEPDFRPSF 250

Query: 627 RDIAAILREI 636
           R   AI+R++
Sbjct: 251 R---AIIRDL 257

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 258

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 66/283 (23%), Positives = 111/283 (39%), Gaps = 71/283 (25%)

Query: 373 DFSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 431
                IG    G VYK T    G E+A+  + +       +N E+    +I  +    H 
Sbjct: 22  KNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRK-----QNKELII-NEILIMKDCKHP 75

Query: 432 NFVNLIG-FCEEEEPFTRMMVFEYAPNGTLFEHIH-----IKESEHLDWGMRLRIAMGMA 485
           N V+    +   +E +   +V EY   G+L + I      + E +             +A
Sbjct: 76  NIVDYYDSYLVGDELW---VVMEYMDGGSLTDIITQNFVRMNEPQ-------------IA 119

Query: 486 Y-C------LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKK 538
           Y C      LE++H  N  + H  + S  + L++D + KL+D  F  ++        SK+
Sbjct: 120 YVCREVLQGLEYLHSQN--VIHRDIKSDNILLSKDGSVKLADFGFAAQLT----KEKSKR 173

Query: 539 LS-------SAPSASLESN------VYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYL-- 583
            S        AP      +      +++ G++  EM  G  PYL +   L    A +L  
Sbjct: 174 NSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPP-LR---ALFLIT 229

Query: 584 -SGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT 625
             G+ PL+   +P   S          + +  C+  DPEKRP+
Sbjct: 230 TKGIPPLK---NPEKWS------PEFKDFLNKCLVKDPEKRPS 263

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 20/166 (12%)

Query: 416 VQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWG 475
           V   K++  L +V+H   + L  F  E +     M+ EY P G LF ++  + S      
Sbjct: 48  VHNEKRV--LKEVSHPFIIRL--FWTEHDQRFLYMLMEYVPGGELFSYL--RNSGRFSNS 101

Query: 476 MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA--MAEMA 533
             L  A  +   LE++H     I +  L    + L ++   KL+D  F  ++      + 
Sbjct: 102 TGLFYASEIVCALEYLHSKE--IVYRDLKPENILLDKEGHIKLTDFGFAKKLRDRTWTLC 159

Query: 534 ATSKKLSSAPSASLESNVYN-------FGVLLFEMVTGRLPYLVDN 572
            T + L  AP   ++S  +N        G+L++EM+ G  P+  DN
Sbjct: 160 GTPEYL--APE-VIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDN 202

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 6/89 (6%)

Query: 546 SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD---PTLSSFDE 602
           +++S+V++ G+ + E+  G+ P+   N   +D   D +  +  LQQ V    P L S D 
Sbjct: 180 TVKSDVWSLGISIIELALGKFPFAFSNI-DDDGQDDPMGILDLLQQIVQEPPPRLPSSDF 238

Query: 603 EQLETLGELIKSCVRADPEKRPTMRDIAA 631
            +   L + + +C+  DP +RPT + + A
Sbjct: 239 PED--LRDFVDACLLKDPTERPTPQQLCA 265

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|133217 cd05086, PTKc_Aatyk2, Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 9/146 (6%)

Query: 378 IGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 437
           IG+   G V    +     +A   V    A    K    +F ++ D    + H N +  +
Sbjct: 3   IGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQN-EFLQQGDPYRILQHPNILQCL 61

Query: 438 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL---RIAMGMAYCLEHMHQL 494
           G C E  P+  ++VFEY   G L  ++  +E  H      L   R+A  +A  + HMH+ 
Sbjct: 62  GQCVEAIPY--LLVFEYCELGDLKSYLS-QEQWHRRNSQLLLLQRMACEIAAGVTHMHKH 118

Query: 495 NPPIAHNYLNSSAVHLTEDYAAKLSD 520
           N    H+ L      LT D   K+ D
Sbjct: 119 N--FLHSDLALRNCFLTSDLTVKVGD 142

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage spermatogenesis. Although it is classified as a tyr kinase based on sequence similarity and the phylogenetic tree, Aatyk2 has been characterized as a serine/threonine kinase. Length = 268

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.8 bits (106), Expect = 2e-04
 Identities = 30/95 (31%), Positives = 43/95 (45%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 137
           L+L +  L G +  +I S + +K + L  N   G IP     L  LE L    N   G +
Sbjct: 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204

Query: 138 PNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 172
           P +LG   SL  + L  N+  G +  EI  L  L+
Sbjct: 205 PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239

Length = 968

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 54/243 (22%), Positives = 99/243 (40%), Gaps = 50/243 (20%)

Query: 430 HKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL----------- 478
           HKN +NL+G C ++ P    ++ EYA  G L E++  +    +++   +           
Sbjct: 80  HKNIINLLGACTQDGPL--YVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFK 137

Query: 479 -------RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE 531
                  ++A GM Y             H  L +  V +TE+   K++D     ++   +
Sbjct: 138 DLVSCTYQVARGMEYLASQ------KCIHRDLAARNVLVTENNVMKIADFGLARDVNNID 191

Query: 532 M--AATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWA 579
                T+ +L     AP A      + +S+V++FGVL++E+ T G  PY           
Sbjct: 192 YYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPY-------PGIP 244

Query: 580 ADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI 639
            + L  +      +D   +  +E     L  +++ C  A P  RPT + +   L  I  +
Sbjct: 245 VEELFKLLKEGHRMDKPANCTNE-----LYMMMRDCWHAIPSHRPTFKQLVEDLDRILTL 299

Query: 640 TPD 642
           T +
Sbjct: 300 TTN 302

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 63/275 (22%), Positives = 107/275 (38%), Gaps = 49/275 (17%)

Query: 375 SNVIGSSPIGTVYKG-TLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF 433
            N IG    G VY    L  G  +AV  + +      PK ++ +   ++  L  + H N 
Sbjct: 5   GNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDND--PKTIK-EIADEMKVLELLKHPNL 61

Query: 434 VNLIGFCEEEEPFTRMMVF-EYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEH 490
           V   G     E   ++ +F EY   GTL E +       EH+     L++  G+AY   H
Sbjct: 62  VKYYGVEVHRE---KVYIFMEYCSGGTLEELLEHGRILDEHVIRVYTLQLLEGLAYLHSH 118

Query: 491 MHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA---------MAEMAATSKKLSS 541
                  I H  +  + + L  +   KL D     ++          +  +A T   +  
Sbjct: 119 G------IVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYM-- 170

Query: 542 APSASLESN---------VYNFGVLLFEMVTGRLPY-LVDNGSLEDWAADYLSGVQPLQQ 591
           AP                +++ G ++ EM TG+ P+  +DN    ++   +  G     +
Sbjct: 171 APEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELDN----EFQIMFHVGAG--HK 224

Query: 592 FVDPTLSSFDEEQLETLG-ELIKSCVRADPEKRPT 625
              P +   D  QL   G + +  C+ +DP+KRPT
Sbjct: 225 ---PPIP--DSLQLSPEGKDFLDRCLESDPKKRPT 254

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 49/187 (26%)

Query: 415 EVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW 474
           E++  K I       HKN +NL+G C +E P    ++ EYA  G L E +  +     D+
Sbjct: 67  EMELMKLIG-----KHKNIINLLGVCTQEGPL--YVIVEYAAKGNLREFLRARRPPGPDY 119

Query: 475 GMRL------------------RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAA 516
              +                  ++A GM Y LE    +     H  L +  V +TED   
Sbjct: 120 TFDITKVPEEQLSFKDLVSCAYQVARGMEY-LESRRCI-----HRDLAARNVLVTEDNVM 173

Query: 517 KLSDLSFWNEIAMAEMAATSKKLSS--------APSA------SLESNVYNFGVLLFEMV 562
           K++D      +   +     KK S+        AP A      + +S+V++FG+L++E+ 
Sbjct: 174 KIADFGLARGVHDIDY---YKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIF 230

Query: 563 T-GRLPY 568
           T G  PY
Sbjct: 231 TLGGSPY 237

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 57/270 (21%), Positives = 113/270 (41%), Gaps = 50/270 (18%)

Query: 402 VSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTL- 460
           V+V + KD        F+++ + L+ + H++ V   G C + +P   +MVFEY  +G L 
Sbjct: 38  VAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPL--IMVFEYMKHGDLN 95

Query: 461 -FEHIHIKESEHLDWGMRL----------------RIAMGMAYCLEHMHQLNPPIAHNYL 503
            F   H  ++  L  G                   +IA GM Y L   H       H  L
Sbjct: 96  KFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVY-LASQH-----FVHRDL 149

Query: 504 NSSAVHLTEDYAAKLSDLSFWNEIAMAEM----AATSKKLSSAPSASL-------ESNVY 552
            +    +  +   K+ D     ++   +       T   +   P  S+       ES+V+
Sbjct: 150 ATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVW 209

Query: 553 NFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGEL 611
           +FGV+L+E+ T G+ P+   + +      + ++  + L++   P +        + + ++
Sbjct: 210 SFGVILWEIFTYGKQPWFQLSNTE---VIECITQGRVLER---PRVCP------KEVYDI 257

Query: 612 IKSCVRADPEKRPTMRDIAAILREITGITP 641
           +  C + +P++R  +++I  IL  +   TP
Sbjct: 258 MLGCWQREPQQRLNIKEIYKILHALGKATP 287

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 39/272 (14%)

Query: 377 VIGSSPIGTVYKGTL---SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF 433
           V+GS   GTVYKG        V+I VA   +  A     N E+     +  ++ V++ + 
Sbjct: 14  VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYV--MASVDNPHV 71

Query: 434 VNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE----SEH-LDWGMRLRIAMGMAYCL 488
             L+G C      T  ++ +  P G L +++   +    S++ L+W   ++IA GM Y L
Sbjct: 72  CRLLGICLTS---TVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWC--VQIAKGMNY-L 125

Query: 489 EHMHQLNPPI-AHNYL--NSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSA 545
           E    ++  + A N L      V +T+   AKL  L    +   AE      K  +  S 
Sbjct: 126 EERRLVHRDLAARNVLVKTPQHVKITDFGLAKL--LGADEKEYHAEGGKVPIKWMALESI 183

Query: 546 -----SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS 599
                + +S+V+++GV ++E++T G  PY   +G      +  L   + L Q   P + +
Sbjct: 184 LHRIYTHQSDVWSYGVTVWELMTFGSKPY---DGIPASEISSILEKGERLPQ---PPICT 237

Query: 600 FDEEQLETLGELIKSCVRADPEKRPTMRDIAA 631
            D      +  ++  C   D + RP  R++  
Sbjct: 238 ID------VYMIMVKCWMIDADSRPKFRELII 263

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 43.2 bits (101), Expect = 3e-04
 Identities = 67/313 (21%), Positives = 127/313 (40%), Gaps = 57/313 (18%)

Query: 350 QLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAK 408
           +L+     G PK K +  E         IG    GTVY    ++ G E+A+  +      
Sbjct: 8   KLRSIVSVGDPKKKYTRFEK--------IGQGASGTVYTAMDVATGQEVAIRQM------ 53

Query: 409 DWPKNLEVQFRKK-----IDTLSKVNHKNFVN-LIGFCEEEEPFTRMMVFEYAPNGTLFE 462
               NL+ Q +K+     I  + +  + N VN L  +   +E +   +V EY   G+L +
Sbjct: 54  ----NLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELW---VVMEYLAGGSLTD 106

Query: 463 HIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLS 522
              +     +D G    +       LE +H  +  + H  + S  + L  D + KL+D  
Sbjct: 107 ---VVTETCMDEGQIAAVCRECLQALEFLH--SNQVIHRDIKSDNILLGMDGSVKLTDFG 161

Query: 523 FWNEIA-----MAEMAAT----SKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG 573
           F  +I       + M  T    + ++ +  +   + ++++ G++  EM+ G  PYL +N 
Sbjct: 162 FCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNEN- 220

Query: 574 SLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI---- 629
                 A YL       +  +P      E+      + +  C+  D EKR + +++    
Sbjct: 221 ---PLRALYLIATNGTPELQNP------EKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQ 271

Query: 630 -AAILREITGITP 641
              I + ++ +TP
Sbjct: 272 FLKIAKPLSSLTP 284

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.3 bits (102), Expect = 4e-04
 Identities = 28/87 (32%), Positives = 41/87 (47%)

Query: 85  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 144
           L G +  EI  LT +  + L  N+ +G IP   G L+ L+ L    N  SGP+P  +   
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283

Query: 145 HSLTILLLDNNDFVGSLSPEIYKLQVL 171
             L  L L +N   G +   + +LQ L
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNL 310

Length = 968

>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 62/259 (23%), Positives = 107/259 (41%), Gaps = 51/259 (19%)

Query: 409 DWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI---- 464
           D  KN    F K+I  +S++   N + L+  C   +P    M+ EY  NG L + +    
Sbjct: 57  DANKNARNDFLKEIKIMSRLKDPNIIRLLAVCITSDPLC--MITEYMENGDLNQFLSRHE 114

Query: 465 -----HIKESEHLDWG----MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA 515
                   +   + +     M  +IA GM Y    +  LN    H  L +    + ++Y 
Sbjct: 115 PQEAAEKADVVTISYSTLIFMATQIASGMKY----LSSLN--FVHRDLATRNCLVGKNYT 168

Query: 516 AKLSDLSFWNEIAMAE--------------MAATSKKLSSAPSASLESNVYNFGVLLFEM 561
            K++D      +   +              M+  S  L    +A   S+V+ FGV L+E+
Sbjct: 169 IKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTA---SDVWAFGVTLWEI 225

Query: 562 VT--GRLPY--LVDNGSLEDWAADYLSGVQPLQQFV-DPTLSSFDEEQLETLGELIKSCV 616
           +T     PY  L D   +E+    +    Q  Q ++  P L        ++L +L+ SC 
Sbjct: 226 LTLCKEQPYSQLSDEQVIENTGEFFRD--QGRQVYLPKPALCP------DSLYKLMLSCW 277

Query: 617 RADPEKRPTMRDIAAILRE 635
           R + ++RP+ ++I A L E
Sbjct: 278 RRNAKERPSFQEIHATLLE 296

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.5 bits (100), Expect = 8e-04
 Identities = 26/98 (26%), Positives = 44/98 (44%)

Query: 74  KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
           ++ NL+L      G +  ++ SL+ +  + L  N  SG IP+     ++L  LD  HN  
Sbjct: 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535

Query: 134 SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVL 171
           SG +P        L+ L L  N   G +   +  ++ L
Sbjct: 536 SGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESL 573

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 6/106 (5%)

Query: 73  GKVVNLNLKDLC---LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFG 129
           GK  NL + DL    L G +   + S  ++  +IL +NS  G IP+  G    L  +   
Sbjct: 353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ 412

Query: 130 HNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSP---EIYKLQVLS 172
            N+FSG LP++      +  L + NN+  G ++    ++  LQ+LS
Sbjct: 413 DNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLS 458

Length = 968

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 43/223 (19%), Positives = 86/223 (38%), Gaps = 34/223 (15%)

Query: 425 LSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH--IKESEHLD----WGMRL 478
           L ++ H N V       +    T  +V EY   G L + I    KE ++++    W +  
Sbjct: 53  LRELKHPNIVRYYDRIIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILT 112

Query: 479 RIAMGMAYCLEHMHQLNPP---IAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAAT 535
           ++ + +  C    H  + P   + H  L  + + L  +   KL D      +      A 
Sbjct: 113 QLLLALYEC----HNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFAK 168

Query: 536 ---------SKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV 586
                    S +  +  S   +S++++ G L++E+     P+          A + L   
Sbjct: 169 TYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFT---------ARNQLQLA 219

Query: 587 QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
             +++     +      +L    E+IKS +  DP+KRP+  ++
Sbjct: 220 SKIKEGKFRRIPYRYSSELN---EVIKSMLNVDPDKRPSTEEL 259

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 53/260 (20%), Positives = 98/260 (37%), Gaps = 60/260 (23%)

Query: 413 NLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH------- 465
           +++  F+++   +++ +H N V L+G C   +P    ++FEY   G L E +        
Sbjct: 50  DMQADFQREAALMAEFDHPNIVKLLGVCAVGKPMC--LLFEYMAYGDLNEFLRHRSPRAQ 107

Query: 466 -------------------IKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSS 506
                              +  +E L   +  ++A GMAY  E          H  L + 
Sbjct: 108 CSLSHSTSSARKCGLNPLPLSCTEQL--CIAKQVAAGMAYLSERKF------VHRDLATR 159

Query: 507 AVHLTEDYAAKLSDLSFWNEIAMAEMAATSKK----LSSAPSAS-------LESNVYNFG 555
              + E+   K++D      I  A+    S+     +   P  S        ES+V+ +G
Sbjct: 160 NCLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYG 219

Query: 556 VLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKS 614
           V+L+E+ + G  PY              ++  + +    D  + S  +     L  L++ 
Sbjct: 220 VVLWEIFSYGMQPYY------------GMAHEEVIYYVRDGNVLSCPDNCPLELYNLMRL 267

Query: 615 CVRADPEKRPTMRDIAAILR 634
           C    P  RP+   I  IL+
Sbjct: 268 CWSKLPSDRPSFASINRILQ 287

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 40.9 bits (95), Expect = 0.001
 Identities = 67/297 (22%), Positives = 123/297 (41%), Gaps = 54/297 (18%)

Query: 350 QLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAK 408
           +L+     G PK K +  E         IG    GTV+    ++ G E+A+  +      
Sbjct: 7   KLRTIVSIGDPKKKYTRYEK--------IGQGASGTVFTAIDVATGQEVAIKQI------ 52

Query: 409 DWPKNLEVQFRKK-----IDTLSKVNHKNFVNLI-GFCEEEEPFTRMMVFEYAPNGTLFE 462
               NL+ Q +K+     I  + ++ + N VN +  F   +E F   +V EY   G+L +
Sbjct: 53  ----NLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVGDELF---VVMEYLAGGSLTD 105

Query: 463 HIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNP-PIAHNYLNSSAVHLTEDYAAKLSDL 521
              +     +D     +IA     CL+ +  L+   + H  + S  V L  D + KL+D 
Sbjct: 106 ---VVTETCMD---EAQIAAVCRECLQALEFLHANQVIHRDIKSDNVLLGMDGSVKLTDF 159

Query: 522 SFWNEIA-----MAEMAAT----SKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDN 572
            F  +I       + M  T    + ++ +  +   + ++++ G++  EMV G  PYL +N
Sbjct: 160 GFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNEN 219

Query: 573 GSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
                  A YL       +  +P      E+      + +  C+  D EKR + +++
Sbjct: 220 ----PLRALYLIATNGTPELQNP------EKLSPIFRDFLNRCLEMDVEKRGSAKEL 266

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 69/276 (25%), Positives = 116/276 (42%), Gaps = 47/276 (17%)

Query: 375 SNVIGSSPIGTV-YKGTLSNGVEIAVASVSVASAKDWPKN---LEVQFRKKIDTLSKVN- 429
           S V+GS   GTV     +S+G   AV  V +    +  KN    EV      D  S V  
Sbjct: 37  SRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKC 96

Query: 430 HKNFVNLIGFCEEEEPFTRMM---VFEYAPNGTLFEHIHIKES------EHLDWGMRLRI 480
           H++F       +   P   +M   V +YA  G L + I  +        EH + G+ L I
Sbjct: 97  HEDFA----KKDPRNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREH-EAGL-LFI 150

Query: 481 AMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLS 540
            + +A  + H+H  +  + H  + S+ + L  +   KL D  F    A        +   
Sbjct: 151 QVLLA--VHHVHSKH--MIHRDIKSANILLCSNGLVKLGDFGFSKMYAATVSDDVGRTFC 206

Query: 541 SAP-----------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL 589
             P             S ++++++ GVLL+E++T + P+  D  ++E+     L+G    
Sbjct: 207 GTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPF--DGENMEEVMHKTLAG---- 260

Query: 590 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT 625
            ++ DP   S   E  E +  L+ S    DP++RP+
Sbjct: 261 -RY-DPLPPSISPEMQEIVTALLSS----DPKRRPS 290

Length = 496

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 76/290 (26%), Positives = 129/290 (44%), Gaps = 54/290 (18%)

Query: 362 LKRSELEAACEDFSNVIGSSPIGTVYKGTL---SNGVEIAVASVSVASAKDWPK-NLEVQ 417
           LK +EL+        V+GS   GTVYKG        V+I VA + V      PK N E+ 
Sbjct: 4   LKETELKKV-----KVLGSGAFGTVYKGIWIPDGENVKIPVA-IKVLRENTSPKANKEIL 57

Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI-----HIKESEHL 472
               +  ++ V       L+G C      T  +V +  P G L +++      I   + L
Sbjct: 58  DEAYV--MAGVGSPYVCRLLGICLTS---TVQLVTQLMPYGCLLDYVRENKDRIGSQDLL 112

Query: 473 DWGMRLRIAMGMAYCLEHMHQLNPPI-AHNYLNSSAVH--LTEDYAAKLSDL------SF 523
           +W   ++IA GM+Y LE +  ++  + A N L  S  H  +T+   A+L D+      + 
Sbjct: 113 NWC--VQIAKGMSY-LEEVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHAD 169

Query: 524 WNEIAMAEMAATS---KKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWA 579
             ++ +  MA  S   ++ +       +S+V+++GV ++E++T G  PY   +G      
Sbjct: 170 GGKVPIKWMALESILHRRFTH------QSDVWSYGVTVWELMTFGAKPY---DGIPAREI 220

Query: 580 ADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
            D L   + L Q   P + + D   +     ++K C   D E RP  R++
Sbjct: 221 PDLLEKGERLPQ---PPICTIDVYMI-----MVK-CWMIDSECRPRFREL 261

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 41.1 bits (96), Expect = 0.002
 Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 8/102 (7%)

Query: 193 ERSIKWNGVLDEDTVQRRLLQINPFRNL---KGRILGIAPTSSPPPSSDAIPPASVGSSD 249
           E  I+   ++     + R L+          +G  +  A    PP S   +PP S     
Sbjct: 147 EIEIQMIDLIGMQRAEIRGLREMLVELQIGGRGGNIPGAIQPPPPSSLPGLPPGS----- 201

Query: 250 DTKANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIP 291
            + A   SS   + +     +   P P+P Q   P  SIP P
Sbjct: 202 SSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASIPAP 243

Length = 582

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 9/97 (9%)

Query: 529 MAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP 588
           MA     S   +  P+ +++S+V++ G+ + EM  GR PY  +          Y +    
Sbjct: 168 MAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPET---------YANIFAQ 218

Query: 589 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT 625
           L   VD    +      +   + +  C+   P +RPT
Sbjct: 219 LSAIVDGDPPTLPSGYSDDAQDFVAKCLNKIPNRRPT 255

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 64/286 (22%), Positives = 117/286 (40%), Gaps = 56/286 (19%)

Query: 378 IGSSPIGTVYKGTLSNGVE--IAVASVSV---ASAKDWPKNLEVQFRKKIDTLS----KV 428
           +GS   G VYK    N  +  +A+  ++V   A  KD  +  +      +  ++    ++
Sbjct: 8   LGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKD-KRERDKSIGDIVSEVTIIKEQL 66

Query: 429 NHKNFVNLI-GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE-----SEHLDWGMRLRIAM 482
            H N V     F E +  +  M + E AP G  F    +KE     +E   W + +++ +
Sbjct: 67  RHPNIVRYYKTFLENDRLYIVMDLIEGAPLGEHF--NSLKEKKQRFTEERIWNIFVQMVL 124

Query: 483 GMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSA 542
            + Y    +H+    I H  L  + + L ED    ++D        +A+      KL+S 
Sbjct: 125 ALRY----LHK-EKRIVHRDLTPNNIMLGEDDKVTITDF------GLAKQKQPESKLTSV 173

Query: 543 PSASLES--------------NVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV-Q 587
               L S              +V+ FG +L++M T + P+   N  +   A   +  V +
Sbjct: 174 VGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTN--MLSLATKIVEAVYE 231

Query: 588 PLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 633
           PL    +   S       E + ++I SC+  D E RP +  ++A++
Sbjct: 232 PLP---EGMYS-------EDVTDVITSCLTPDAEARPDIIQVSAMI 267

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 56/265 (21%), Positives = 102/265 (38%), Gaps = 45/265 (16%)

Query: 379 GSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 437
           GSS  G VYK      G   A+  + V   +        Q  +++ TL        V   
Sbjct: 12  GSS--GVVYKVRHKPTGKIYALKKIHVDGDE----EFRKQLLRELKTLRSCESPYVVKCY 65

Query: 438 G-FCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNP 496
           G F +E E     +V EY   G+L     +K+   +   +   IA  +   L+++H    
Sbjct: 66  GAFYKEGEIS---IVLEYMDGGSL--ADLLKKVGKIPEPVLAYIARQILKGLDYLHTKRH 120

Query: 497 PIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSA--------P----- 543
            I H  +  S + +      K++D      I+   +  T  + ++         P     
Sbjct: 121 -IIHRDIKPSNLLINSKGEVKIADFG----IS-KVLENTLDQCNTFVGTVTYMSPERIQG 174

Query: 544 -SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS--F 600
            S S  +++++ G+ L E   G+ P+L            +   +Q +     P+L +  F
Sbjct: 175 ESYSYAADIWSLGLTLLECALGKFPFLPPGQ------PSFFELMQAICDGPPPSLPAEEF 228

Query: 601 DEEQLETLGELIKSCVRADPEKRPT 625
             E      + I +C++ DP+KRP+
Sbjct: 229 SPE----FRDFISACLQKDPKKRPS 249

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.7 bits (95), Expect = 0.003
 Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 228 APTSSPPPSSDAIPPASVGSSDDTKANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPS 287
           +P  SP     A  P            +  +       P +L +PA AP P Q P    S
Sbjct: 383 SPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAP---GARPAELPSPASAPTPEQQPPVARS 439

Query: 288 IPIPR-PSSSQSHQKSGGSSS 307
            P+P  P +S     + G   
Sbjct: 440 APLPPSPQASAPRNVASGKPG 460

Length = 620

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 4/82 (4%)

Query: 231 SSPPPSSDAIPPASVGSSDDTKANETSSDRNDSVS----PPKLSNPAPAPAPNQTPTPTP 286
           + P  +S + PP+S        +           S    P    +  P P+P     P+P
Sbjct: 177 ADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSP 236

Query: 287 SIPIPRPSSSQSHQKSGGSSSK 308
                 P      Q    S++K
Sbjct: 237 PPGPAAPPPPPVQQVPPLSTAK 258

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 62/287 (21%), Positives = 113/287 (39%), Gaps = 52/287 (18%)

Query: 378 IGSSPIGTVY----KGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF 433
           +G    G VY    KG + +  E  VA  +V  A    + +E  F  +   + + N  + 
Sbjct: 14  LGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIE--FLNEASVMKEFNCHHV 71

Query: 434 VNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH-IKESEHLDWGMRL-----------RIA 481
           V L+G   + +P   +++ E    G L  ++  ++     +                 IA
Sbjct: 72  VRLLGVVSQGQP--TLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIA 129

Query: 482 MGMAYCLEHMHQLNP-PIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKK-- 538
            GMAY       LN     H  L +    + ED+  K+ D     +I   +      K  
Sbjct: 130 DGMAY-------LNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGL 182

Query: 539 --LSSAPSASLE-------SNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQP 588
             +      SL+       S+V++FGV+L+E+ T    PY              +S  Q 
Sbjct: 183 LPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPY------------QGMSNEQV 230

Query: 589 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
           L+  ++  L    +   + L EL++ C + +P+ RP+  +I + ++E
Sbjct: 231 LRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKE 277

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 41/194 (21%), Positives = 78/194 (40%), Gaps = 51/194 (26%)

Query: 479 RIAMGMAYCLEHMH-QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI--AMAEMAAT 535
           +IA+ +   LE++H +L+  + H  +  S V +  +   KL D      +  ++A+    
Sbjct: 107 KIAVSIVKALEYLHSKLS--VIHRDVKPSNVLINRNGQVKLCDFGISGYLVDSVAKTIDA 164

Query: 536 SKKLSSAPSA----------SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG 585
             K   AP             ++S+V++ G+ + E+ TGR PY       + W   +   
Sbjct: 165 GCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPY-------DSWKTPF--- 214

Query: 586 VQPLQQFVD---PTL--SSFDEEQLETLGELIKSCVRADPEKRPTMR------------- 627
            Q L+Q V+   P L    F  E      + +  C++ + ++RP                
Sbjct: 215 -QQLKQVVEEPSPQLPAEKFSPE----FQDFVNKCLKKNYKERPNYPELLQHPFFELHLS 269

Query: 628 ---DIAAILREITG 638
              D+A+ +  I G
Sbjct: 270 KNTDVASFVSLILG 283

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 24/119 (20%), Positives = 33/119 (27%), Gaps = 12/119 (10%)

Query: 200 GVLDEDTVQRR-LLQINPFRNLKGRILGIAPTSSPPP-------SSDAIPPASVGSSDDT 251
           G LDE+  Q+    +    R  K    G  P   PP                +    +D 
Sbjct: 118 GELDEEVAQKIKYAKWKAARIHKALKEGEDPNPGPPLDEEDEDADVATTNSDNSFPGEDA 177

Query: 252 KANETSSDRNDSVSPPKLSNPAPAPAPNQ----TPTPTPSIPIPRPSSSQSHQKSGGSS 306
                S     S SP   S P+P   P+     +  P PS              +  S 
Sbjct: 178 DPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSP 236

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	664
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	100.0
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	100.0
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	100.0
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
KOG1989	738	consensus ARK protein kinase family [Signal transd	100.0
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	100.0
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	100.0
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	100.0
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	100.0
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	100.0
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	100.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	100.0
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	100.0
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	100.0
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	100.0
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	100.0
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	100.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	100.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	100.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	100.0
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	100.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	100.0
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	100.0
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	100.0
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	100.0
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	100.0
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	100.0
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	100.0
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	100.0
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	100.0
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	100.0
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	100.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	100.0
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	100.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	100.0
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	100.0
KOG3653	534	consensus Transforming growth factor beta/activin	100.0
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	100.0
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	100.0
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	100.0
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	100.0
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	100.0
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	100.0
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	100.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	100.0
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	100.0
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	100.0
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	100.0
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	100.0
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	100.0
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	100.0
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	100.0
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	100.0
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	100.0
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	100.0
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	100.0
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	100.0
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	100.0
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	100.0
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
KOG0584	632	consensus Serine/threonine protein kinase [General	100.0
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	100.0
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	100.0
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	100.0
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	100.0
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	100.0
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	100.0
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	100.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	100.0
KOG0589	426	consensus Serine/threonine protein kinase [General	100.0
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	100.0
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	100.0
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	100.0
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	100.0
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	100.0
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
KOG2052	513	consensus Activin A type IB receptor, serine/threo	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	100.0
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	100.0
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	100.0
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	100.0
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	100.0
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	100.0
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	100.0
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	100.0
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	100.0
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	100.0
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
PTZ00266	1021	NIMA-related protein kinase; Provisional	100.0
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	100.0
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	100.0
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	100.0
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	100.0
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	100.0
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	100.0
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	100.0
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	100.0
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	100.0
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	100.0
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	100.0
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	100.0
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	100.0
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	100.0
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	100.0
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	100.0
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	100.0
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	100.0
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	100.0
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	100.0
PHA03211	461	serine/threonine kinase US3; Provisional	100.0
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	100.0
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	100.0
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	100.0
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	100.0
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	100.0
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	100.0
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	100.0
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	100.0
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	100.0
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	100.0
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	100.0
PHA03209	357	serine/threonine kinase US3; Provisional	100.0
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	100.0
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	100.0
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	100.0
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	100.0
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	100.0
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	100.0
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	100.0
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
PHA03207	392	serine/threonine kinase US3; Provisional	100.0
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	100.0
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	100.0
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	100.0
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	100.0
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	100.0
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	100.0
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	100.0
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	100.0
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	100.0
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	100.0
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	100.0
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	100.0
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	100.0
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	100.0
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	100.0
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	100.0
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.98
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.98
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.98
PTZ00284	467	protein kinase; Provisional	99.98
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.98
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.98
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.98
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.98
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.98
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.98
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.98
PLN00009	294	cyclin-dependent kinase A; Provisional	99.98
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.98
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.98
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.97
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.97
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.97
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.97
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.97
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.97
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.97
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.97
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.97
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.97
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.97
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.97
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.97
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.97
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.97
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.97
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.97
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.97
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.97
KOG0610	459	consensus Putative serine/threonine protein kinase	99.97
PHA02882	294	putative serine/threonine kinase; Provisional	99.97
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.97
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.97
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.97
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.97
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.97
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.97
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.97
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.97
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.97
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.97
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.97
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.97
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.97
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.97
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.97
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.97
PHA03210	501	serine/threonine kinase US3; Provisional	99.97
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.97
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.97
KOG0586	596	consensus Serine/threonine protein kinase [General	99.97
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.97
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.97
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.97
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.97
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.97
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.97
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.96
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.96
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.96
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.96
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.96
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.96
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.96
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.96
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.96
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.96
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.96
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.96
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.96
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.95
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.95
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.95
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.95
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.95
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.94
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.94
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.94
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.94
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.94
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.93
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.93
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.93
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.93
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.92
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.92
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.92
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.91
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.9
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.89
PLN00181	793	protein SPA1-RELATED; Provisional	99.89
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.89
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.89
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.89
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.89
KOG1152	772	consensus Signal transduction serine/threonine kin	99.88
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.87
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.85
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.84
PRK09188	365	serine/threonine protein kinase; Provisional	99.84
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.84
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.81
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.8
PLN03150	623	hypothetical protein; Provisional	99.8
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.79
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.78
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.77
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.73
PRK10345	210	hypothetical protein; Provisional	99.72
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.72
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.71
PRK14879	211	serine/threonine protein kinase; Provisional	99.7
PRK12274	218	serine/threonine protein kinase; Provisional	99.7
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.69
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.68
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.68
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.68
smart00090	237	RIO RIO-like kinase.	99.67
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.67
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.62
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.58
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.57
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.57
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.53
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.52
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.46
KOG1266	458	consensus Protein kinase [Signal transduction mech	99.41
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.35
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.34
PLN03150	623	hypothetical protein; Provisional	99.28
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.22
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.2
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.19
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.09
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.08
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	99.04
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	98.99
KOG3087	229	consensus Serine/threonine protein kinase [General	98.95
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.92
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.85
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.83
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.83
KOG1243	690	consensus Protein kinase [General function predict	98.81
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.77
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.76
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.72
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.69
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.69
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.65
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.6
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.59
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.55
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.53
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.53
PRK09902	216	hypothetical protein; Provisional	98.52
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.51
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.49
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.49
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.48
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.4
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.4
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.37
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.37
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	98.37
KOG0606	1205	consensus Microtubule-associated serine/threonine	98.32
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.29
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.27
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.27
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.25
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.24
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.24
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.21
KOG1235	538	consensus Predicted unusual protein kinase [Genera	98.15
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.13
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.12
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.09
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	98.09
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.08
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.99
COG4248	637	Uncharacterized protein with protein kinase and he	97.93
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	97.88
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.84
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	97.76
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.74
PLN02876	822	acyl-CoA dehydrogenase	97.73
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.72
PRK10593	297	hypothetical protein; Provisional	97.68
PF01636	239	APH: Phosphotransferase enzyme family This family	97.68
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.63
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.61
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.61
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.6

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=5.5e-55  Score=523.89  Aligned_cols=493  Identities=23%  Similarity=0.370  Sum_probs=323.3

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      ..+..|+|++|.+.|.+|..+ .+++|+.|+|++|.++|.+|..+.++++|+.|+|++|+++|.+|..++++++|++|+|
T Consensus       452 ~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  530 (968)
T PLN00113        452 PSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL  530 (968)
T ss_pred             CCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEEC
Confidence            467888888888888887654 4578888888888888888888888888888888888888888888888888888888


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCccccccccccccccccccccCCcchhhhhhcccCCCcccccccccccCCCCCC
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAPTSS  232 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~  232 (664)
                      ++|.++|.+|..+.++++|+.|+|++|+++|.+|....       .     ...+...+++.|.+.   +.         
T Consensus       531 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-------~-----l~~L~~l~ls~N~l~---~~---------  586 (968)
T PLN00113        531 SHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG-------N-----VESLVQVNISHNHLH---GS---------  586 (968)
T ss_pred             CCCcccccCChhHhCcccCCEEECCCCcccccCChhHh-------c-----CcccCEEeccCCcce---ee---------
Confidence            88888888888888888888888888888888886211       0     001111122211111   10         


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccEEE
Q 006019          233 PPPSSDAIPPASVGSSDDTKANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSHQKSGGSSSKHIAI  312 (664)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  312 (664)
                       .|..+...        ........  .+     +.++...+        ....+++     .. . .   . ......+
T Consensus       587 -~p~~~~~~--------~~~~~~~~--~n-----~~lc~~~~--------~~~~~~c-----~~-~-~---~-~~~~~~~  631 (968)
T PLN00113        587 -LPSTGAFL--------AINASAVA--GN-----IDLCGGDT--------TSGLPPC-----KR-V-R---K-TPSWWFY  631 (968)
T ss_pred             -CCCcchhc--------ccChhhhc--CC-----ccccCCcc--------ccCCCCC-----cc-c-c---c-cceeeee
Confidence             01000000        00000000  00     00000000        0000000     00 0 0   0 1111223


Q ss_pred             EehHHHHHHHHHH-HHHhhheeecccCCCCCCCCCCchhhhhhhhc-CCCCCCHHHHHHHHhhhhcccccCCCeEEEEEE
Q 006019          313 LGGVIGGAILLVA-TVGIYLCRCNKVSTVKPWATGLSGQLQKAFVT-GVPKLKRSELEAACEDFSNVIGSSPIGTVYKGT  390 (664)
Q Consensus       313 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~el~~~~~~~~~~iG~G~~G~Vy~g~  390 (664)
                      +++++++++++++ +++++++|+++....+.............+.. ....++.+++... .+..+.||+|+||.||+|+
T Consensus       632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ig~G~~g~Vy~~~  710 (968)
T PLN00113        632 ITCTLGAFLVLALVAFGFVFIRGRNNLELKRVENEDGTWELQFFDSKVSKSITINDILSS-LKEENVISRGKKGASYKGK  710 (968)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccchhhhHHHHHhh-CCcccEEccCCCeeEEEEE
Confidence            3333333333322 22333333332221111111000000000000 0112333444332 1234789999999999999


Q ss_pred             E-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEecCCCChhhhhcccCC
Q 006019          391 L-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKES  469 (664)
Q Consensus       391 ~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~  469 (664)
                      . .++..||||++.....         ....|++.+++++|||||+++|+|.+.+  ..++|||||++|+|.++++    
T Consensus       711 ~~~~~~~vavK~~~~~~~---------~~~~~~~~l~~l~HpnIv~~~~~~~~~~--~~~lv~Ey~~~g~L~~~l~----  775 (968)
T PLN00113        711 SIKNGMQFVVKEINDVNS---------IPSSEIADMGKLQHPNIVKLIGLCRSEK--GAYLIHEYIEGKNLSEVLR----  775 (968)
T ss_pred             ECCCCcEEEEEEccCCcc---------ccHHHHHHHhhCCCCCcceEEEEEEcCC--CCEEEEeCCCCCcHHHHHh----
Confidence            7 5789999998853221         1234688999999999999999998876  5699999999999999985    


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcC-CCCeEEeCcCCCCeEecCCCceEecccCchhhhhh-----hhhhcccccccCCC
Q 006019          470 EHLDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM-----AEMAATSKKLSSAP  543 (664)
Q Consensus       470 ~~l~~~~~~~ia~~ia~gL~yLH~~-~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~-----~~~~~~~pe~~~~~  543 (664)
                       .++|.++.+|+.|+|+|++|||+. .++|+|||+||+||+++.++.+++. ||.+.....     ....+.+||+....
T Consensus       776 -~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~~~~~~~~t~~y~aPE~~~~~  853 (968)
T PLN00113        776 -NLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCTDTKCFISSAYVAPETRETK  853 (968)
T ss_pred             -cCCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-eccccccccCCCccccccccCcccccCC
Confidence             389999999999999999999953 5569999999999999999988875 655443321     12457789998888


Q ss_pred             CCCcCCcchhhHHHHHHHHhCCCCccCC---CCChHHHHHHHhcCCCCCccccCCCCC---CCCHHHHHHHHHHHHHhcc
Q 006019          544 SASLESNVYNFGVLLFEMVTGRLPYLVD---NGSLEDWAADYLSGVQPLQQFVDPTLS---SFDEEQLETLGELIKSCVR  617 (664)
Q Consensus       544 ~~s~ksDVySfGvvl~El~tG~~P~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~~l~~l~~~Cl~  617 (664)
                      .++.|+|||||||++|||+||+.||+..   .....+|++..... .....++|+.+.   ..+.+...++.+++.+||+
T Consensus       854 ~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~  932 (968)
T PLN00113        854 DITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSD-CHLDMWIDPSIRGDVSVNQNEIVEVMNLALHCTA  932 (968)
T ss_pred             CCCcccchhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHhcCc-cchhheeCccccCCCCccHHHHHHHHHHHHhhCc
Confidence            8999999999999999999999998532   34567777654433 234455566543   2345667788999999999


Q ss_pred             CCCCCCCCHHHHHHHHHhhhCCCCCCC
Q 006019          618 ADPEKRPTMRDIAAILREITGITPDGA  644 (664)
Q Consensus       618 ~~P~~RPs~~ev~~~L~~i~~~~~~~~  644 (664)
                      .||++||+|+||+++|+++....++..
T Consensus       933 ~~P~~RPt~~evl~~L~~~~~~~~~~~  959 (968)
T PLN00113        933 TDPTARPCANDVLKTLESASRSSSSCV  959 (968)
T ss_pred             CCchhCcCHHHHHHHHHHhhccccccc
Confidence            999999999999999999988665544

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-55  Score=461.39  Aligned_cols=275  Identities=38%  Similarity=0.654  Sum_probs=240.0

Q ss_pred             CCCCCCHHHHHHHHhhhh--cccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccc
Q 006019          358 GVPKLKRSELEAACEDFS--NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN  435 (664)
Q Consensus       358 ~~~~~~~~el~~~~~~~~--~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~  435 (664)
                      ....|++.|+..+|++|+  +.||+|+||.||+|.+++|..||||++......    . .++|.+|++++++++|||+|+
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~----~-~~eF~~Ei~~ls~l~H~Nlv~  135 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQ----G-EREFLNEVEILSRLRHPNLVK  135 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCc----c-hhHHHHHHHHHhcCCCcCccc
Confidence            345689999999999999  799999999999999999999999977644322    1 467999999999999999999


Q ss_pred             eEEEEecCCCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEEeCcCCCCeEecCCC
Q 006019          436 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDY  514 (664)
Q Consensus       436 l~g~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~-~~~~ivHrDLk~~NILld~~~  514 (664)
                      |+|||.+.+. +.+||||||++|+|.++|+......++|.+|++||.++|+||+|||. +.|+||||||||+|||||+++
T Consensus       136 LlGyC~e~~~-~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~  214 (361)
T KOG1187|consen  136 LLGYCLEGGE-HRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDF  214 (361)
T ss_pred             EEEEEecCCc-eEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCC
Confidence            9999998773 37999999999999999996544389999999999999999999996 777999999999999999999


Q ss_pred             ceEecccCchhhhhh----------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccC----CCCChHHHHH
Q 006019          515 AAKLSDLSFWNEIAM----------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLV----DNGSLEDWAA  580 (664)
Q Consensus       515 ~~kl~DfGla~~~~~----------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~----~~~~~~~~~~  580 (664)
                      ++||+|||+++....          ....+.+|||...+..++|+|||||||+|+||+||+.|.+.    ....+.+|+.
T Consensus       215 ~aKlsDFGLa~~~~~~~~~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~~  294 (361)
T KOG1187|consen  215 NAKLSDFGLAKLGPEGDTSVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWAK  294 (361)
T ss_pred             CEEccCccCcccCCccccceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHHHH
Confidence            999999999987753          23345679999999999999999999999999999998863    2345899998


Q ss_pred             HHhcCCCCCccccCCCCC--CCCH-HHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          581 DYLSGVQPLQQFVDPTLS--SFDE-EQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       581 ~~~~~~~~~~~~~d~~~~--~~~~-~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                      ..+... .+.+++|+.+.  .++. ++...+..++.+|++.+|.+||+|.+|+++|+.+...
T Consensus       295 ~~~~~~-~~~eiiD~~l~~~~~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~~L~~~~~~  355 (361)
T KOG1187|consen  295 PLLEEG-KLREIVDPRLKEGEYPDEKEVKKLAELALRCLRPDPKERPTMSQVVKELEGILSL  355 (361)
T ss_pred             HHHHCc-chhheeCCCccCCCCChHHHHHHHHHHHHHHcCcCCCcCcCHHHHHHHHHhhccc
Confidence            877764 78999999985  4453 6788899999999999999999999999999776654

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.5e-49  Score=409.59  Aligned_cols=254  Identities=27%  Similarity=0.405  Sum_probs=219.0

Q ss_pred             HHHHHHHHhhhhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecC
Q 006019          364 RSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEE  443 (664)
Q Consensus       364 ~~el~~~~~~~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~  443 (664)
                      .+++.+....+.+.||+|.||.||.|.|++...||+|.++.....      .++|.+|+++|++++|+|||+++|+|..+
T Consensus       200 ~wei~r~~l~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m~------~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~  273 (468)
T KOG0197|consen  200 PWEIPREELKLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEGSMS------PEAFLREAQIMKKLRHEKLVKLYGVCTKQ  273 (468)
T ss_pred             CeeecHHHHHHHHHhcCCccceEEEEEEcCCCcccceEEeccccC------hhHHHHHHHHHHhCcccCeEEEEEEEecC
Confidence            345555555677899999999999999988889999999876443      36899999999999999999999999987


Q ss_pred             CCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCc
Q 006019          444 EPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF  523 (664)
Q Consensus       444 ~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGl  523 (664)
                      +  ..+||||||++|+|.++|+...+..+...+.+.+|.|||+|++||++++  +|||||.++||||+++..+||+|||+
T Consensus       274 ~--piyIVtE~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~~--~IHRDLAARNiLV~~~~~vKIsDFGL  349 (468)
T KOG0197|consen  274 E--PIYIVTEYMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESKN--YIHRDLAARNILVDEDLVVKISDFGL  349 (468)
T ss_pred             C--ceEEEEEecccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhCC--ccchhhhhhheeeccCceEEEccccc
Confidence            7  4599999999999999998767888999999999999999999999999  99999999999999999999999999


Q ss_pred             hhhhhhh----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccc
Q 006019          524 WNEIAMA----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQF  592 (664)
Q Consensus       524 a~~~~~~----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~  592 (664)
                      ||.....          ...+++||......++.|||||||||+||||+| |+.||  ......+.+....++       
T Consensus       350 Ar~~~d~~Y~~~~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py--~~msn~ev~~~le~G-------  420 (468)
T KOG0197|consen  350 ARLIGDDEYTASEGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPY--PGMSNEEVLELLERG-------  420 (468)
T ss_pred             ccccCCCceeecCCCCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCC--CCCCHHHHHHHHhcc-------
Confidence            9954322          234567888888889999999999999999999 99999  455555555554443       


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          593 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       593 ~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                         .....|+.|+.+++++|..||+.+|++||||+.+...|+++...
T Consensus       421 ---yRlp~P~~CP~~vY~lM~~CW~~~P~~RPtF~~L~~~l~~~~~~  464 (468)
T KOG0197|consen  421 ---YRLPRPEGCPDEVYELMKSCWHEDPEDRPTFETLREVLEDFFTS  464 (468)
T ss_pred             ---CcCCCCCCCCHHHHHHHHHHhhCCcccCCCHHHHHHHHHHhhhc
Confidence               22345677888999999999999999999999999999998764

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=1e-46  Score=393.16  Aligned_cols=249  Identities=28%  Similarity=0.447  Sum_probs=206.3

Q ss_pred             hcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          375 SNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      .+.||+|+||+||+|.|++...||||++.......   ...++|.+|+.+|.+++|||||+++|+|.+... ..++||||
T Consensus        46 ~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~---~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~-~~~iVtEy  121 (362)
T KOG0192|consen   46 EEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDD---ESRKAFRREASLLSRLRHPNIVQFYGACTSPPG-SLCIVTEY  121 (362)
T ss_pred             hhhcccCCceeEEEEEeCCceeEEEEEecchhcCh---HHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC-ceEEEEEe
Confidence            35699999999999999765559999997654333   226799999999999999999999999987642 46899999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC-ceEecccCchhhhhh----
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY-AAKLSDLSFWNEIAM----  529 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~-~~kl~DfGla~~~~~----  529 (664)
                      |++|+|.++++......++|..+++||.+||+|+.|||+++| |||||||++|||++.++ ++||+|||+++....    
T Consensus       122 ~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~~~-iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~~~  200 (362)
T KOG0192|consen  122 MPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSEGP-IIHRDLKSDNILVDLKGKTLKIADFGLSREKVISKTS  200 (362)
T ss_pred             CCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCC-eeecccChhhEEEcCCCCEEEECCCccceeecccccc
Confidence            999999999986556789999999999999999999999987 99999999999999998 999999999976642    


Q ss_pred             -----hhhhcccccccC--CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          530 -----AEMAATSKKLSS--APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       530 -----~~~~~~~pe~~~--~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                           ++..+.+||...  ...++.|+|||||||++|||+||+.||..  ....+.+........         ....+.
T Consensus       201 ~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~--~~~~~~~~~v~~~~~---------Rp~~p~  269 (362)
T KOG0192|consen  201 MTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFED--LAPVQVASAVVVGGL---------RPPIPK  269 (362)
T ss_pred             ccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCC--CCHHHHHHHHHhcCC---------CCCCCc
Confidence                 123456899888  66899999999999999999999999943  333444444432211         112233


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          603 EQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                      .++..+..++.+||+.||+.||+|.+++..|+.+...
T Consensus       270 ~~~~~l~~l~~~CW~~dp~~RP~f~ei~~~l~~~~~~  306 (362)
T KOG0192|consen  270 ECPPHLSSLMERCWLVDPSRRPSFLEIVSRLESIMSH  306 (362)
T ss_pred             cCCHHHHHHHHHhCCCCCCcCCCHHHHHHHHHHHHHh
Confidence            3667799999999999999999999999999988653

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-47  Score=415.00  Aligned_cols=263  Identities=24%  Similarity=0.385  Sum_probs=218.6

Q ss_pred             CHHHHHHHHhhhhcccccCCCeEEEEEEEC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccce
Q 006019          363 KRSELEAACEDFSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNL  436 (664)
Q Consensus       363 ~~~el~~~~~~~~~~iG~G~~G~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l  436 (664)
                      ...|+.+....+.+.||+|+||+||+|+..      +...||||.++....    ....++|++|+++|+.++|||||+|
T Consensus       479 ~~~~i~r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~----~~~~~dF~REaeLla~l~H~nIVrL  554 (774)
T KOG1026|consen  479 KVLEIPRSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAE----NQARQDFRREAELLAELQHPNIVRL  554 (774)
T ss_pred             ceeEechhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhccccc----HHHHHHHHHHHHHHHhccCCCeEEE
Confidence            334555555567789999999999999963      346789998864332    3467899999999999999999999


Q ss_pred             EEEEecCCCceeEEEEEecCCCChhhhhccc--------CCC----CCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcC
Q 006019          437 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIK--------ESE----HLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLN  504 (664)
Q Consensus       437 ~g~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~--------~~~----~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk  504 (664)
                      +|+|.+++|  .++|+|||..|||.++|+..        .+.    .|+-.+.+.||.|||.|++||-+..  +|||||.
T Consensus       555 lGVC~~~~P--~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~--FVHRDLA  630 (774)
T KOG1026|consen  555 LGVCREGDP--LCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSHH--FVHRDLA  630 (774)
T ss_pred             EEEEccCCe--eEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCc--ccccchh
Confidence            999999985  49999999999999999743        122    3889999999999999999998888  9999999


Q ss_pred             CCCeEecCCCceEecccCchhhhhhhhh-----------hcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCC
Q 006019          505 SSAVHLTEDYAAKLSDLSFWNEIAMAEM-----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDN  572 (664)
Q Consensus       505 ~~NILld~~~~~kl~DfGla~~~~~~~~-----------~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~  572 (664)
                      ++|+||.++..+||+|||++|.....+.           .+++||-...+++|++||||||||||||++| |+.||.+  
T Consensus       631 TRNCLVge~l~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~g--  708 (774)
T KOG1026|consen  631 TRNCLVGENLVVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYG--  708 (774)
T ss_pred             hhhceeccceEEEecccccchhhhhhhhhcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccc--
Confidence            9999999999999999999998865433           3456888888999999999999999999999 9999942  


Q ss_pred             CChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCCCCCC
Q 006019          573 GSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAI  645 (664)
Q Consensus       573 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~~~~~  645 (664)
                      ....+.+..          +-+..+.+.|+.|+.++++||..||+.+|.+||+|+||...|+...+.++....
T Consensus       709 lSn~EVIe~----------i~~g~lL~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI~~~L~~~~~~s~~~~~  771 (774)
T KOG1026|consen  709 LSNQEVIEC----------IRAGQLLSCPENCPTEVYSLMLECWNENPKRRPSFKEIHSRLQAWAQASPKYSS  771 (774)
T ss_pred             cchHHHHHH----------HHcCCcccCCCCCCHHHHHHHHHHhhcCcccCCCHHHHHHHHHHHHhcCccccc
Confidence            222333322          223344567889999999999999999999999999999999999888776554

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=100.00  E-value=5.7e-46  Score=395.03  Aligned_cols=252  Identities=19%  Similarity=0.373  Sum_probs=212.1

Q ss_pred             HHHHHHhhhhcccccCCCeEEEEEEEC----CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEe
Q 006019          366 ELEAACEDFSNVIGSSPIGTVYKGTLS----NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCE  441 (664)
Q Consensus       366 el~~~~~~~~~~iG~G~~G~Vy~g~~~----~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~  441 (664)
                      ||+.+...+.++||.|.||.||+|+++    ....||||.++...    .....++|+.|+.+|++++||||++|.|+.+
T Consensus       625 EId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~Gy----tekqrrdFL~EAsIMGQFdHPNIIrLEGVVT  700 (996)
T KOG0196|consen  625 EIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGY----TEKQRRDFLSEASIMGQFDHPNIIRLEGVVT  700 (996)
T ss_pred             hcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCc----cHHHHhhhhhhhhhcccCCCCcEEEEEEEEe
Confidence            455555555689999999999999975    34678999997654    3456789999999999999999999999999


Q ss_pred             cCCCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEeccc
Q 006019          442 EEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDL  521 (664)
Q Consensus       442 ~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~Df  521 (664)
                      ...+  .|||+|||+||+|..+|+.+. .+++|.+...+.+|||.|+.||.+.+  +|||||.++|||++.+..+||+||
T Consensus       701 ks~P--vMIiTEyMENGsLDsFLR~~D-GqftviQLVgMLrGIAsGMkYLsdm~--YVHRDLAARNILVNsnLvCKVsDF  775 (996)
T KOG0196|consen  701 KSKP--VMIITEYMENGSLDSFLRQND-GQFTVIQLVGMLRGIASGMKYLSDMN--YVHRDLAARNILVNSNLVCKVSDF  775 (996)
T ss_pred             cCce--eEEEhhhhhCCcHHHHHhhcC-CceEeehHHHHHHHHHHHhHHHhhcC--chhhhhhhhheeeccceEEEeccc
Confidence            8884  599999999999999998655 56999999999999999999999999  999999999999999999999999


Q ss_pred             Cchhhhhhhh------------hhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCC
Q 006019          522 SFWNEIAMAE------------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQP  588 (664)
Q Consensus       522 Gla~~~~~~~------------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~  588 (664)
                      |++|.+....            ..+++||-..-.++|.+||||||||||||.++ |++||.  +....+.+..+..+   
T Consensus       776 GLSRvledd~~~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYW--dmSNQdVIkaIe~g---  850 (996)
T KOG0196|consen  776 GLSRVLEDDPEAAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYW--DMSNQDVIKAIEQG---  850 (996)
T ss_pred             cceeecccCCCccccccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCccc--ccchHHHHHHHHhc---
Confidence            9999774332            34456777777889999999999999999998 999995  23333333333322   


Q ss_pred             CccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          589 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       589 ~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                             ....-|.+|+..+++||+.||++|-.+||.|.+|+..|++++.
T Consensus       851 -------yRLPpPmDCP~aL~qLMldCWqkdR~~RP~F~qiV~~lDklIr  893 (996)
T KOG0196|consen  851 -------YRLPPPMDCPAALYQLMLDCWQKDRNRRPKFAQIVSTLDKLIR  893 (996)
T ss_pred             -------cCCCCCCCCcHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhc
Confidence                   2234467888999999999999999999999999999999863

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-43  Score=351.95  Aligned_cols=247  Identities=21%  Similarity=0.320  Sum_probs=204.5

Q ss_pred             CCHHHHHHHHhhhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEE
Q 006019          362 LKRSELEAACEDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFC  440 (664)
Q Consensus       362 ~~~~el~~~~~~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~  440 (664)
                      ++..|+++.     +.||+|..|+|||++++ +++.+|+|.+....    .....+++.+|++++++++||+||+++|.|
T Consensus        76 i~~~dle~~-----~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~----~~~~~~Qi~rEl~il~~~~spyIV~~ygaF  146 (364)
T KOG0581|consen   76 ISLSDLERL-----GVLGSGNGGTVYKVRHKPTGKIYALKVILLNI----DPALQKQILRELEILRSCQSPYIVGFYGAF  146 (364)
T ss_pred             cCHHHhhhh-----hhcccCCCcEEEEEEEcCCCeEEEEEeecccC----CHHHHHHHHHHHHHHhhCCCCCeeeEeEEE
Confidence            455666653     67999999999999976 58889999985432    245678999999999999999999999999


Q ss_pred             ecCCCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEEeCcCCCCeEecCCCceEec
Q 006019          441 EEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLS  519 (664)
Q Consensus       441 ~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~-~~~~ivHrDLk~~NILld~~~~~kl~  519 (664)
                      ...+. +..++||||.+|||.+++.  ..+.++.....+||.+|++||.|||+ .+  ||||||||+|||+++.|++||+
T Consensus       147 ~~~~~-~isI~mEYMDgGSLd~~~k--~~g~i~E~~L~~ia~~VL~GL~YLh~~~~--IIHRDIKPsNlLvNskGeVKic  221 (364)
T KOG0581|consen  147 YSNGE-EISICMEYMDGGSLDDILK--RVGRIPEPVLGKIARAVLRGLSYLHEERK--IIHRDIKPSNLLVNSKGEVKIC  221 (364)
T ss_pred             EeCCc-eEEeehhhcCCCCHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHhhccC--eeeccCCHHHeeeccCCCEEec
Confidence            98774 4799999999999999985  33678999999999999999999995 66  9999999999999999999999


Q ss_pred             ccCchhhhhhh-------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCC---ChHHHHHHHhcCCCCC
Q 006019          520 DLSFWNEIAMA-------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG---SLEDWAADYLSGVQPL  589 (664)
Q Consensus       520 DfGla~~~~~~-------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~---~~~~~~~~~~~~~~~~  589 (664)
                      |||.++.+...       +..|++||...+..++.++||||||++++|+.+|+.||.....   ...+....+..+    
T Consensus       222 DFGVS~~lvnS~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~~~~~~~Ll~~Iv~~----  297 (364)
T KOG0581|consen  222 DFGVSGILVNSIANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPPNPPYLDIFELLCAIVDE----  297 (364)
T ss_pred             cccccHHhhhhhcccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCcCCCCCCHHHHHHHHhcC----
Confidence            99999887533       4567789999999999999999999999999999999975422   333333333322    


Q ss_pred             ccccCCCCCCCCH-HHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          590 QQFVDPTLSSFDE-EQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       590 ~~~~d~~~~~~~~-~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                            .-+..+. .+..++.+++..|+++||.+||+++++++.
T Consensus       298 ------ppP~lP~~~fS~ef~~FV~~CL~Kdp~~R~s~~qLl~H  335 (364)
T KOG0581|consen  298 ------PPPRLPEGEFSPEFRSFVSCCLRKDPSERPSAKQLLQH  335 (364)
T ss_pred             ------CCCCCCcccCCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence                  2222333 366789999999999999999999988763

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-42  Score=389.38  Aligned_cols=251  Identities=26%  Similarity=0.386  Sum_probs=207.6

Q ss_pred             HHHhhhhcccccCCCeEEEEEEECC--Cc----EEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEec
Q 006019          369 AACEDFSNVIGSSPIGTVYKGTLSN--GV----EIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEE  442 (664)
Q Consensus       369 ~~~~~~~~~iG~G~~G~Vy~g~~~~--~~----~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~  442 (664)
                      .....+.+.||+|+||.||+|.+.+  |.    .||||.+.....    .+...+|.+|..+|++++|||||+++|+|.+
T Consensus       691 ~~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~----~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~  766 (1025)
T KOG1095|consen  691 RKNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSS----EQEVSDFLKEALLMSKFDHPNIVSLIGVCLD  766 (1025)
T ss_pred             hhheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCC----HHHHHHHHHHHHHHhcCCCcceeeEEEeecC
Confidence            3444566899999999999999753  33    377777654322    3456889999999999999999999999998


Q ss_pred             CCCceeEEEEEecCCCChhhhhccc-----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceE
Q 006019          443 EEPFTRMMVFEYAPNGTLFEHIHIK-----ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAK  517 (664)
Q Consensus       443 ~~~~~~~lV~Ey~~~GsL~~~l~~~-----~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~k  517 (664)
                      ..  ..+|++|||++|+|..+|+..     ....|+....+.+|.|||+|+.||++++  +|||||.++||||++...+|
T Consensus       767 ~~--~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~~--fvHRDLAaRNCLL~~~r~VK  842 (1025)
T KOG1095|consen  767 SG--PPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESKH--FVHRDLAARNCLLDERRVVK  842 (1025)
T ss_pred             CC--CcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhCC--CcCcchhhhheeecccCcEE
Confidence            77  459999999999999999854     1456899999999999999999999998  99999999999999999999


Q ss_pred             ecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcC
Q 006019          518 LSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSG  585 (664)
Q Consensus       518 l~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~  585 (664)
                      |+|||+||.+...           ...+++||......+|.|+|||||||++||++| |..||.  +.+..+....++.+
T Consensus       843 IaDFGlArDiy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~--~~~n~~v~~~~~~g  920 (1025)
T KOG1095|consen  843 IADFGLARDIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYP--SRSNFEVLLDVLEG  920 (1025)
T ss_pred             EcccchhHhhhhchheeccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCC--CcchHHHHHHHHhC
Confidence            9999999965322           234567888888999999999999999999999 999993  33333333334433


Q ss_pred             CCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          586 VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       586 ~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                      .          ..+.|..|++.++++|..||+.+|++||+|..|++.++.+...
T Consensus       921 g----------RL~~P~~CP~~ly~lM~~CW~~~pe~RP~F~~i~~q~~~i~~~  964 (1025)
T KOG1095|consen  921 G----------RLDPPSYCPEKLYQLMLQCWKHDPEDRPSFRTIVEQDPAISNA  964 (1025)
T ss_pred             C----------ccCCCCCCChHHHHHHHHHccCChhhCccHHHHHhhhhhhhhh
Confidence            2          2344677888999999999999999999999999999998754

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-42  Score=361.67  Aligned_cols=271  Identities=24%  Similarity=0.428  Sum_probs=211.0

Q ss_pred             HHHHHHHhhhhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCC
Q 006019          365 SELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE  444 (664)
Q Consensus       365 ~el~~~~~~~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~  444 (664)
                      +|+...-..+.+.||+|.||+||+|+|.+  .||||++.+..-.   ....+.|+.|+.++++-||.||+-+.|||..+.
T Consensus       387 WeIp~~ev~l~~rIGsGsFGtV~Rg~whG--dVAVK~Lnv~~pt---~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p~  461 (678)
T KOG0193|consen  387 WEIPPEEVLLGERIGSGSFGTVYRGRWHG--DVAVKLLNVDDPT---PEQLQAFKNEVAVLKKTRHENILLFMGACMNPP  461 (678)
T ss_pred             cccCHHHhhccceeccccccceeeccccc--ceEEEEEecCCCC---HHHHHHHHHHHHHHhhcchhhheeeehhhcCCc
Confidence            33333333345899999999999999854  5899999865433   457789999999999999999999999999865


Q ss_pred             CceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCch
Q 006019          445 PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW  524 (664)
Q Consensus       445 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla  524 (664)
                        . .||+.+|++.+|+.++|..+ ..++..+.++||.|||+|+.|||.++  |||||||+.||+|++++.+||+|||++
T Consensus       462 --~-AIiTqwCeGsSLY~hlHv~e-tkfdm~~~idIAqQiaqGM~YLHAK~--IIHrDLKSnNIFl~~~~kVkIgDFGLa  535 (678)
T KOG0193|consen  462 --L-AIITQWCEGSSLYTHLHVQE-TKFDMNTTIDIAQQIAQGMDYLHAKN--IIHRDLKSNNIFLHEDLKVKIGDFGLA  535 (678)
T ss_pred             --e-eeeehhccCchhhhhccchh-hhhhHHHHHHHHHHHHHhhhhhhhhh--hhhhhccccceEEccCCcEEEecccce
Confidence              3 89999999999999999654 67899999999999999999999999  999999999999999999999999997


Q ss_pred             hhhh-----------hhhhhcccccccCC---CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCc
Q 006019          525 NEIA-----------MAEMAATSKKLSSA---PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQ  590 (664)
Q Consensus       525 ~~~~-----------~~~~~~~~pe~~~~---~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~  590 (664)
                      ....           .....+.+||+...   -+++..+||||||+|+|||+||..||.....+  +.+..    ..  +
T Consensus       536 tvk~~w~g~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi~~~d--qIifm----VG--r  607 (678)
T KOG0193|consen  536 TVKTRWSGEQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSIQNRD--QIIFM----VG--R  607 (678)
T ss_pred             eeeeeeccccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCCCChh--heEEE----ec--c
Confidence            5432           23345667876643   45899999999999999999999999522211  11100    00  1


Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCC-CCCCCCCCcchHH
Q 006019          591 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP-DGAIPKLSPLWWA  654 (664)
Q Consensus       591 ~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~-~~~~~~~~~~~~~  654 (664)
                      ...-+........++.++.+|+..||..++++||.|.+|+..|+++...-| -...+....+.|+
T Consensus       608 G~l~pd~s~~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~il~~l~~l~~~~pki~RS~S~P~~~~~  672 (678)
T KOG0193|consen  608 GYLMPDLSKIRSNCPKAMKRLLSDCWKFDREERPLFPQLLSKLEELLPSLPKINRSASEPVLLRS  672 (678)
T ss_pred             cccCccchhhhccCHHHHHHHHHHHHhcCcccCccHHHHHHHHHHhhhcccccccCcCccchhhh
Confidence            112223333445677889999999999999999999999999999887432 2333444444443

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-42  Score=357.30  Aligned_cols=257  Identities=22%  Similarity=0.359  Sum_probs=214.9

Q ss_pred             CCCCHHHHHHHHhhhhcccccCCCeEEEEEEECC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEE
Q 006019          360 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIG  438 (664)
Q Consensus       360 ~~~~~~el~~~~~~~~~~iG~G~~G~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g  438 (664)
                      |..+.+|+++......++||-|.||.||.|.|+. .-.||||.++...      ...++|++|+.+|+.++|||+|+|+|
T Consensus       257 Pn~DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDt------MeveEFLkEAAvMKeikHpNLVqLLG  330 (1157)
T KOG4278|consen  257 PNADKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT------MEVEEFLKEAAVMKEIKHPNLVQLLG  330 (1157)
T ss_pred             CCcchhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhcc------hhHHHHHHHHHHHHhhcCccHHHHhh
Confidence            4456677777666667999999999999999975 5678999886433      23578999999999999999999999


Q ss_pred             EEecCCCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEe
Q 006019          439 FCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKL  518 (664)
Q Consensus       439 ~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl  518 (664)
                      +|+...++  |||+|||.+|+|.++|+......+.--..+.+|.||+.|++||..++  +|||||.++|||+.++..+||
T Consensus       331 VCT~EpPF--YIiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkkn--FIHRDLAARNCLVgEnhiVKv  406 (1157)
T KOG4278|consen  331 VCTHEPPF--YIITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHIVKV  406 (1157)
T ss_pred             hhccCCCe--EEEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHhh--hhhhhhhhhhccccccceEEe
Confidence            99988765  99999999999999999877777888888999999999999999888  999999999999999999999


Q ss_pred             cccCchhhhhhhh----------hhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCC
Q 006019          519 SDLSFWNEIAMAE----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ  587 (664)
Q Consensus       519 ~DfGla~~~~~~~----------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~  587 (664)
                      +|||+++.+....          ..+++||-.....++.|+|||+|||+||||.| |..||.+  .++.+ ++..+... 
T Consensus       407 ADFGLsRlMtgDTYTAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPG--idlSq-VY~LLEkg-  482 (1157)
T KOG4278|consen  407 ADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQ-VYGLLEKG-  482 (1157)
T ss_pred             eccchhhhhcCCceecccCccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCC--ccHHH-HHHHHhcc-
Confidence            9999999885432          23456776666778999999999999999999 9999943  33332 22333221 


Q ss_pred             CCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          588 PLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       588 ~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                              ...+.++.|+..+++||+.||+..|.+||+|.|+.+.++.+..
T Consensus       483 --------yRM~~PeGCPpkVYeLMraCW~WsPsDRPsFaeiHqafEtmf~  525 (1157)
T KOG4278|consen  483 --------YRMDGPEGCPPKVYELMRACWNWSPSDRPSFAEIHQAFETMFS  525 (1157)
T ss_pred             --------ccccCCCCCCHHHHHHHHHHhcCCcccCccHHHHHHHHHHHhc
Confidence                    1224467788899999999999999999999999999998864

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9e-42  Score=360.20  Aligned_cols=259  Identities=25%  Similarity=0.366  Sum_probs=208.2

Q ss_pred             HHHHHHHhhhhcccccCCCeEEEEEEECC--C--cE-EEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEE
Q 006019          365 SELEAACEDFSNVIGSSPIGTVYKGTLSN--G--VE-IAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGF  439 (664)
Q Consensus       365 ~el~~~~~~~~~~iG~G~~G~Vy~g~~~~--~--~~-vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~  439 (664)
                      +|+......+.++||+|+||.||+|++..  +  .. ||||..+...  ........+|.+|+++|++++|||||+++|+
T Consensus       152 Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~--~~~~~~~~e~m~EArvMr~l~H~NVVr~yGV  229 (474)
T KOG0194|consen  152 WELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSS--ELTKEQIKEFMKEARVMRQLNHPNVVRFYGV  229 (474)
T ss_pred             cEEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccc--cccHHHHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence            34444444456899999999999999753  2  23 7888776422  1235667899999999999999999999999


Q ss_pred             EecCCCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEec
Q 006019          440 CEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLS  519 (664)
Q Consensus       440 ~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~  519 (664)
                      +....|.  |||||+|+||+|.++|+.. ...++..++++++.+.|.||+|||+++  ++||||.++|||++.++.+||+
T Consensus       230 a~~~~Pl--~ivmEl~~gGsL~~~L~k~-~~~v~~~ek~~~~~~AA~Gl~YLh~k~--~IHRDIAARNcL~~~~~~vKIS  304 (474)
T KOG0194|consen  230 AVLEEPL--MLVMELCNGGSLDDYLKKN-KKSLPTLEKLRFCYDAARGLEYLHSKN--CIHRDIAARNCLYSKKGVVKIS  304 (474)
T ss_pred             EcCCCcc--EEEEEecCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHhHHHHHHHCC--CcchhHhHHHheecCCCeEEeC
Confidence            9998865  9999999999999999743 347999999999999999999999999  9999999999999999999999


Q ss_pred             ccCchhhhhh---------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCC
Q 006019          520 DLSFWNEIAM---------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPL  589 (664)
Q Consensus       520 DfGla~~~~~---------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~  589 (664)
                      |||+++....         ....+.+||......++.++|||||||++||+++ |..||.  +....+....+...... 
T Consensus       305 DFGLs~~~~~~~~~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~--g~~~~~v~~kI~~~~~r-  381 (474)
T KOG0194|consen  305 DFGLSRAGSQYVMKKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYP--GMKNYEVKAKIVKNGYR-  381 (474)
T ss_pred             ccccccCCcceeeccccccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCC--CCCHHHHHHHHHhcCcc-
Confidence            9999886531         1245567888888899999999999999999999 999994  33333333333222111 


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCC
Q 006019          590 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP  641 (664)
Q Consensus       590 ~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~  641 (664)
                              ...+...+.++..++.+||..+|++||+|.++.+.|+.+.....
T Consensus       382 --------~~~~~~~p~~~~~~~~~c~~~~p~~R~tm~~i~~~l~~~~~~~~  425 (474)
T KOG0194|consen  382 --------MPIPSKTPKELAKVMKQCWKKDPEDRPTMSTIKKKLEALEKKKE  425 (474)
T ss_pred             --------CCCCCCCHHHHHHHHHHhccCChhhccCHHHHHHHHHHHHhccc
Confidence                    12233455678889999999999999999999999999977633

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=2e-39  Score=324.72  Aligned_cols=235  Identities=22%  Similarity=0.356  Sum_probs=186.0

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||+||+|+++ ++.+||||.+.....   .+...+-...|+++|++++|||||+|+.++..++  ..+||||
T Consensus        15 ~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l---~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~--~i~lVME   89 (429)
T KOG0595|consen   15 SREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKL---NKKLVELLLSEIKILKELKHPNIVRLLDCIEDDD--FIYLVME   89 (429)
T ss_pred             hhhccCcceEEEEEeEeccCCceEEeeeehhhcc---CHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCC--eEEEEEE
Confidence            356999999999999975 589999999976543   2345667889999999999999999999999888  7899999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCC------CceEecccCchhhh
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED------YAAKLSDLSFWNEI  527 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~------~~~kl~DfGla~~~  527 (664)
                      ||.+|+|.++++.  .+.++..+...++.|+|.||++||+++  ||||||||.||||+..      -.+||+|||+||.+
T Consensus        90 yC~gGDLs~yi~~--~~~l~e~t~r~Fm~QLA~alq~L~~~~--IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L  165 (429)
T KOG0595|consen   90 YCNGGDLSDYIRR--RGRLPEATARHFMQQLASALQFLHENN--IIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFL  165 (429)
T ss_pred             eCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eeeccCCcceEEeccCCCCCCCceEEecccchhhhC
Confidence            9999999999974  457999999999999999999999999  9999999999999865      46899999999988


Q ss_pred             hhhh--------hhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 006019          528 AMAE--------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  599 (664)
Q Consensus       528 ~~~~--------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  599 (664)
                      ....        ..|++||.....+|+.|+|+||.|+++||++||+.||+  .....+....+..+.+.. ...      
T Consensus       166 ~~~~~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~--a~t~~eL~~~~~k~~~~~-~~~------  236 (429)
T KOG0595|consen  166 QPGSMAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFD--AETPKELLLYIKKGNEIV-PVL------  236 (429)
T ss_pred             CchhHHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCcc--ccCHHHHHHHHhcccccc-Cch------
Confidence            6443        35568999889999999999999999999999999994  334455544333332211 111      


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCCCHHH
Q 006019          600 FDEEQLETLGELIKSCVRADPEKRPTMRD  628 (664)
Q Consensus       600 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~e  628 (664)
                       +........++...-++.+|.+|-++.+
T Consensus       237 -~~~~s~~~~~Ll~~ll~~~~~~~~~~~~  264 (429)
T KOG0595|consen  237 -PAELSNPLRELLISLLQRNPKDRISFED  264 (429)
T ss_pred             -hhhccCchhhhhhHHHhcCccccCchHH
Confidence             1111122345555666666666655553

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-40  Score=341.74  Aligned_cols=259  Identities=22%  Similarity=0.361  Sum_probs=208.1

Q ss_pred             HHHHHHHhhhhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCC
Q 006019          365 SELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE  444 (664)
Q Consensus       365 ~el~~~~~~~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~  444 (664)
                      .|+.+..--|.++||+|-||.|..+....+..||||+++....    .+...+|.+|+++|.+++|||||+|+|+|..++
T Consensus       533 ~EfPRs~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~----~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~De  608 (807)
T KOG1094|consen  533 VEFPRSRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDAT----KNARNDFLKEIKILSRLKHPNIVELLGVCVQDD  608 (807)
T ss_pred             hhcchhheehhhhhcCcccceeEEEEecCceEEEEeecCcccc----hhHHHHHHHHHHHHhccCCCCeeEEEeeeecCC
Confidence            4555555567799999999999999998889999999976543    345689999999999999999999999999988


Q ss_pred             CceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCch
Q 006019          445 PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW  524 (664)
Q Consensus       445 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla  524 (664)
                      +.  ++|+|||++|+|..++...+...+.-..-.+|+.|||.|++||.+++  +||||+.++|||+|.++++||+|||++
T Consensus       609 Pi--cmI~EYmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes~n--fVHrd~a~rNcLv~~e~~iKiadfgms  684 (807)
T KOG1094|consen  609 PL--CMITEYMENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLESLN--FVHRDLATRNCLVDGEFTIKIADFGMS  684 (807)
T ss_pred             ch--HHHHHHHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHhhc--hhhccccccceeecCcccEEecCcccc
Confidence            54  89999999999999997554444555667789999999999999999  999999999999999999999999999


Q ss_pred             hhhhhhh-----------hhcccccccCCCCCCcCCcchhhHHHHHHHHh--CCCCccCC-CCChHHHHHHHhcCCCCCc
Q 006019          525 NEIAMAE-----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT--GRLPYLVD-NGSLEDWAADYLSGVQPLQ  590 (664)
Q Consensus       525 ~~~~~~~-----------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t--G~~P~~~~-~~~~~~~~~~~~~~~~~~~  590 (664)
                      |.+....           ..+++.|-...+++|++||||+|||.+||+++  .+.||..- +...++-...++.+..   
T Consensus       685 R~lysg~yy~vqgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~vven~~~~~~~~~---  761 (807)
T KOG1094|consen  685 RNLYSGDYYRVQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQVVENAGEFFRDQG---  761 (807)
T ss_pred             cccccCCceeeecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhhHHHHHHhhhhhcCCCC---
Confidence            9765433           23345565667789999999999999999987  88999421 1122222222222211   


Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhh
Q 006019          591 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  637 (664)
Q Consensus       591 ~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~  637 (664)
                         .......|.-|+.+++++|.+||..|-++||+|++++..|++..
T Consensus       762 ---~~~~l~~P~~cp~~lyelml~Cw~~es~~RPsFe~lh~~lq~~~  805 (807)
T KOG1094|consen  762 ---RQVVLSRPPACPQGLYELMLRCWRRESEQRPSFEQLHLFLQEDA  805 (807)
T ss_pred             ---cceeccCCCcCcHHHHHHHHHHhchhhhcCCCHHHHHHHHHHhc
Confidence               11223456667788999999999999999999999999998753

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.2e-39  Score=339.72  Aligned_cols=237  Identities=17%  Similarity=0.314  Sum_probs=201.3

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      ..+.||+|||+.||+++. ..|..||+|++.......  ....+...+||++.++++|||||++++|+.+.+  ..|||.
T Consensus        22 ~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k--~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~--nVYivL   97 (592)
T KOG0575|consen   22 RGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKK--PKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSN--NVYIVL   97 (592)
T ss_pred             eeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcC--cchHHHHHHHHHHHHhcCCCcEEeeeeEeecCC--ceEEEE
Confidence            347899999999999996 889999999998755544  345678999999999999999999999999988  789999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      |+|++|+|.+++.  ....+++.....+..||+.|+.|||+.+  |+|||||-.|++|++++++||+|||+|..+...  
T Consensus        98 ELC~~~sL~el~K--rrk~ltEpEary~l~QIv~GlkYLH~~~--IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~E  173 (592)
T KOG0575|consen   98 ELCHRGSLMELLK--RRKPLTEPEARYFLRQIVEGLKYLHSLG--IIHRDLKLGNLFLNENMNVKIGDFGLATQLEYDGE  173 (592)
T ss_pred             EecCCccHHHHHH--hcCCCCcHHHHHHHHHHHHHHHHHHhcC--ceecccchhheeecCcCcEEecccceeeeecCccc
Confidence            9999999998886  5678999999999999999999999999  999999999999999999999999999887633  


Q ss_pred             -------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          531 -------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       531 -------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                             +..+.+||.......+.++||||+|||||.|++|++||.  ...+.+....+......           +|..
T Consensus       174 rk~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFe--tk~vkety~~Ik~~~Y~-----------~P~~  240 (592)
T KOG0575|consen  174 RKKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFE--TKTVKETYNKIKLNEYS-----------MPSH  240 (592)
T ss_pred             ccceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcc--cchHHHHHHHHHhcCcc-----------cccc
Confidence                   234457888888888999999999999999999999993  34444444444333221           2233


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ...++.+|+.+.++.+|.+|||+++|+.
T Consensus       241 ls~~A~dLI~~lL~~~P~~Rpsl~~vL~  268 (592)
T KOG0575|consen  241 LSAEAKDLIRKLLRPNPSERPSLDEVLD  268 (592)
T ss_pred             cCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            4457889999999999999999999986

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=100.00  E-value=6.2e-40  Score=340.49  Aligned_cols=253  Identities=20%  Similarity=0.339  Sum_probs=211.7

Q ss_pred             HHHHHHHHhhhhcccccCCCeEEEEEEECC---CcE--EEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEE
Q 006019          364 RSELEAACEDFSNVIGSSPIGTVYKGTLSN---GVE--IAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIG  438 (664)
Q Consensus       364 ~~el~~~~~~~~~~iG~G~~G~Vy~g~~~~---~~~--vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g  438 (664)
                      -.||.+......++||+|.||.||+|.+.+   |..  ||||.-+..    ......+.|++|..+|++++|||||+|+|
T Consensus       383 nyel~Re~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d----~t~d~tekflqEa~iMrnfdHphIikLIG  458 (974)
T KOG4257|consen  383 NYELRRELITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTD----CTPDDTEKFLQEASIMRNFDHPHIIKLIG  458 (974)
T ss_pred             cceeehhhccHHHhhcCCcccceeeeEecccccCcceeeeeehhccC----CChhhHHHHHHHHHHHHhCCCcchhheee
Confidence            345666666677999999999999999743   444  455543322    22345788999999999999999999999


Q ss_pred             EEecCCCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEe
Q 006019          439 FCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKL  518 (664)
Q Consensus       439 ~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl  518 (664)
                      +|.+..   .++|||.++.|.|+++|.. ++..|+......++.|++.||+|||+.+  +|||||.++|||+.+.-.+|+
T Consensus       459 v~~e~P---~WivmEL~~~GELr~yLq~-nk~sL~l~tL~ly~~Qi~talaYLeSkr--fVHRDIAaRNiLVsSp~CVKL  532 (974)
T KOG4257|consen  459 VCVEQP---MWIVMELAPLGELREYLQQ-NKDSLPLRTLTLYCYQICTALAYLESKR--FVHRDIAARNILVSSPQCVKL  532 (974)
T ss_pred             eeeccc---eeEEEecccchhHHHHHHh-ccccchHHHHHHHHHHHHHHHHHHHhhc--hhhhhhhhhheeecCcceeee
Confidence            998753   5899999999999999974 5667899999999999999999999999  999999999999999999999


Q ss_pred             cccCchhhhhhhhh----------hcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCC
Q 006019          519 SDLSFWNEIAMAEM----------AATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ  587 (664)
Q Consensus       519 ~DfGla~~~~~~~~----------~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~  587 (664)
                      +|||++|.+.....          .+.+||-.-..++|.+||||-|||.+||+++ |..||.            .+.+.+
T Consensus       533 aDFGLSR~~ed~~yYkaS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfq------------gvkNsD  600 (974)
T KOG4257|consen  533 ADFGLSRYLEDDAYYKASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQ------------GVKNSD  600 (974)
T ss_pred             cccchhhhccccchhhccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCccc------------cccccc
Confidence            99999998754433          2345666666778999999999999999998 999993            233345


Q ss_pred             CCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          588 PLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       588 ~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      .+..+........|+.|+..++.+|.+||+.||.+||.+.++...|.+++.
T Consensus       601 VI~~iEnGeRlP~P~nCPp~LYslmskcWayeP~kRPrftei~~~lsdv~q  651 (974)
T KOG4257|consen  601 VIGHIENGERLPCPPNCPPALYSLMSKCWAYEPSKRPRFTEIKAILSDVLQ  651 (974)
T ss_pred             eEEEecCCCCCCCCCCCChHHHHHHHHHhccCcccCCcHHHHHHHHHHHHH
Confidence            566666667777889999999999999999999999999999999999876

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=8e-39  Score=329.82  Aligned_cols=258  Identities=19%  Similarity=0.319  Sum_probs=201.4

Q ss_pred             CCCCCHHHHHHHHhhhhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEE
Q 006019          359 VPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIG  438 (664)
Q Consensus       359 ~~~~~~~el~~~~~~~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g  438 (664)
                      ...++.++++..+   ...||+|++|.||+|.+ +|+.||||.+.......  ....+.|.+|+++|++++|||||+++|
T Consensus        12 ~~~i~~~~i~~~~---~~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~~~g   85 (283)
T PHA02988         12 IKCIESDDIDKYT---SVLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGH--KVLIDITENEIKNLRRIDSNNILKIYG   85 (283)
T ss_pred             ceecCHHHcCCCC---CeEEeeCCceEEEEEEE-CCEEEEEEecccccccc--HHHHHHHHHHHHHHHhcCCCCEEEEee
Confidence            3445555553211   15799999999999998 68899999986543221  233567899999999999999999999


Q ss_pred             EEec--CCCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcC-CCCeEEeCcCCCCeEecCCCc
Q 006019          439 FCEE--EEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLTEDYA  515 (664)
Q Consensus       439 ~~~~--~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~-~~~ivHrDLk~~NILld~~~~  515 (664)
                      ++.+  .+....++||||+++|+|.++++.  ...++|..+.+++.+++.|++|||+. +  ++||||||+|||+++++.
T Consensus        86 ~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~--~~~~~~~~~~~i~~~i~~~l~~lH~~~~--~~Hrdlkp~nill~~~~~  161 (283)
T PHA02988         86 FIIDIVDDLPRLSLILEYCTRGYLREVLDK--EKDLSFKTKLDMAIDCCKGLYNLYKYTN--KPYKNLTSVSFLVTENYK  161 (283)
T ss_pred             eEEecccCCCceEEEEEeCCCCcHHHHHhh--CCCCChhHHHHHHHHHHHHHHHHHhcCC--CCCCcCChhhEEECCCCc
Confidence            9976  332356899999999999999974  35689999999999999999999974 6  779999999999999999


Q ss_pred             eEecccCchhhhhh------hhhhcccccccCC--CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCC
Q 006019          516 AKLSDLSFWNEIAM------AEMAATSKKLSSA--PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ  587 (664)
Q Consensus       516 ~kl~DfGla~~~~~------~~~~~~~pe~~~~--~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~  587 (664)
                      +||+|||+++....      ....+.+||....  ..++.++|||||||++|||+||+.||..  ....++.........
T Consensus       162 ~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~--~~~~~~~~~i~~~~~  239 (283)
T PHA02988        162 LKIICHGLEKILSSPPFKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFEN--LTTKEIYDLIINKNN  239 (283)
T ss_pred             EEEcccchHhhhccccccccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHhcCC
Confidence            99999999886432      2234567887654  5789999999999999999999999943  233343333332211


Q ss_pred             CCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhh
Q 006019          588 PLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  637 (664)
Q Consensus       588 ~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~  637 (664)
                      ..         ..+..++..+.+++.+||+.||++||+|.|+++.|+.+.
T Consensus       240 ~~---------~~~~~~~~~l~~li~~cl~~dp~~Rps~~ell~~l~~~~  280 (283)
T PHA02988        240 SL---------KLPLDCPLEIKCIVEACTSHDSIKRPNIKEILYNLSLYK  280 (283)
T ss_pred             CC---------CCCCcCcHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHH
Confidence            11         112234567999999999999999999999999999874

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-39  Score=334.80  Aligned_cols=230  Identities=25%  Similarity=0.425  Sum_probs=192.3

Q ss_pred             cccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEec
Q 006019          376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYA  455 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey~  455 (664)
                      +-||.|+.|.||.|+++ +..||||+++.-            -..+|+-|++++|+||+.+.|+|.+..  ..|||||||
T Consensus       130 eWlGSGaQGAVF~Grl~-netVAVKKV~el------------kETdIKHLRkLkH~NII~FkGVCtqsP--cyCIiMEfC  194 (904)
T KOG4721|consen  130 EWLGSGAQGAVFLGRLH-NETVAVKKVREL------------KETDIKHLRKLKHPNIITFKGVCTQSP--CYCIIMEFC  194 (904)
T ss_pred             hhhccCcccceeeeecc-CceehhHHHhhh------------hhhhHHHHHhccCcceeeEeeeecCCc--eeEEeeecc
Confidence            45999999999999995 578999987421            235789999999999999999999876  669999999


Q ss_pred             CCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh------
Q 006019          456 PNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM------  529 (664)
Q Consensus       456 ~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~------  529 (664)
                      +.|-|+..|+  ....+......++..+||.|+.|||.+.  |||||||+-||||..+-.+||+|||-++....      
T Consensus       195 a~GqL~~VLk--a~~~itp~llv~Wsk~IA~GM~YLH~hK--IIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~STkMS  270 (904)
T KOG4721|consen  195 AQGQLYEVLK--AGRPITPSLLVDWSKGIAGGMNYLHLHK--IIHRDLKSPNILISYDDVVKISDFGTSKELSDKSTKMS  270 (904)
T ss_pred             ccccHHHHHh--ccCccCHHHHHHHHHHhhhhhHHHHHhh--HhhhccCCCceEeeccceEEeccccchHhhhhhhhhhh
Confidence            9999999996  5567888888999999999999999988  99999999999999999999999999887642      


Q ss_pred             --hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCC-CCCCHHHHH
Q 006019          530 --AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL-SSFDEEQLE  606 (664)
Q Consensus       530 --~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~  606 (664)
                        ++.++++||......+++|.||||||||||||+||+.||..-+..      .++.+..      ...+ ...+..|++
T Consensus       271 FaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdss------AIIwGVG------sNsL~LpvPstcP~  338 (904)
T KOG4721|consen  271 FAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSS------AIIWGVG------SNSLHLPVPSTCPD  338 (904)
T ss_pred             hhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccchh------eeEEecc------CCcccccCcccCch
Confidence              345677899999999999999999999999999999999321110      1111211      1111 245677888


Q ss_pred             HHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 006019          607 TLGELIKSCVRADPEKRPTMRDIAAILREI  636 (664)
Q Consensus       607 ~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i  636 (664)
                      -+.-|+++||+..|..||+|++++..|+-.
T Consensus       339 GfklL~Kqcw~sKpRNRPSFrqil~HldIa  368 (904)
T KOG4721|consen  339 GFKLLLKQCWNSKPRNRPSFRQILLHLDIA  368 (904)
T ss_pred             HHHHHHHHHHhcCCCCCccHHHHHHHHhhc
Confidence            899999999999999999999999998743

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=8.9e-39  Score=338.29  Aligned_cols=248  Identities=21%  Similarity=0.356  Sum_probs=193.6

Q ss_pred             hhhcccccCCCeEEEEEEE------CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCC
Q 006019          373 DFSNVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEP  445 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~------~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~  445 (664)
                      .+.+.||+|+||.||+|.+      .++..||||++.....    ....+.+.+|++++.++ +||||++++|+|...+.
T Consensus        10 ~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~----~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~   85 (338)
T cd05102          10 RLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGAT----ASEHKALMSELKILIHIGNHLNVVNLLGACTKPNG   85 (338)
T ss_pred             eeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccc----hHHHHHHHHHHHHHHHhccCcceeeEEeEecCCCC
Confidence            4558899999999999974      2356799998863321    23346799999999999 89999999999876542


Q ss_pred             ceeEEEEEecCCCChhhhhcccC---------------------------------------------------------
Q 006019          446 FTRMMVFEYAPNGTLFEHIHIKE---------------------------------------------------------  468 (664)
Q Consensus       446 ~~~~lV~Ey~~~GsL~~~l~~~~---------------------------------------------------------  468 (664)
                       ..++||||+++|+|.++++...                                                         
T Consensus        86 -~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (338)
T cd05102          86 -PLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETD  164 (338)
T ss_pred             -ceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhcc
Confidence             4689999999999999886321                                                         


Q ss_pred             ---CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh-----------hhhc
Q 006019          469 ---SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-----------EMAA  534 (664)
Q Consensus       469 ---~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~-----------~~~~  534 (664)
                         ...+++....+++.|+++||+|||+.+  |+||||||+|||+++++.+||+|||+++.....           ...+
T Consensus       165 ~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~--ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y  242 (338)
T cd05102         165 DLWKSPLTMEDLICYSFQVARGMEFLASRK--CIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKW  242 (338)
T ss_pred             ccccCCCCHHHHHHHHHHHHHHHHHHHHCC--EECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCccc
Confidence               134788899999999999999999988  999999999999999999999999998764211           1245


Q ss_pred             ccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHH
Q 006019          535 TSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIK  613 (664)
Q Consensus       535 ~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~  613 (664)
                      .+||......++.++|||||||++|||+| |+.||...... ...... +.....         ...+...+..+.+++.
T Consensus       243 ~aPE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~-~~~~~~-~~~~~~---------~~~~~~~~~~l~~li~  311 (338)
T cd05102         243 MAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIN-EEFCQR-LKDGTR---------MRAPENATPEIYRIML  311 (338)
T ss_pred             cCcHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCcc-HHHHHH-HhcCCC---------CCCCCCCCHHHHHHHH
Confidence            67887777788999999999999999997 99999532221 122222 211111         0112233456889999


Q ss_pred             HhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          614 SCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       614 ~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      +||+.||++||++.|+++.|+++..
T Consensus       312 ~cl~~dp~~RPs~~el~~~l~~~~~  336 (338)
T cd05102         312 ACWQGDPKERPTFSALVEILGDLLQ  336 (338)
T ss_pred             HHccCChhhCcCHHHHHHHHHHHHh
Confidence            9999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.2e-39  Score=323.73  Aligned_cols=244  Identities=18%  Similarity=0.313  Sum_probs=190.3

Q ss_pred             hhcccccCCCeEEEEEE-ECCCcEEEEEEeeecccCCCch--hHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEE
Q 006019          374 FSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPK--NLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  450 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~-~~~~~~vavk~~~~~~~~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~l  450 (664)
                      +.+.||+|+||.|-+|. -++|+.||||++..........  .......+|+++|++++|||||++++++...+  ..|+
T Consensus       176 i~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~d--s~Ym  253 (475)
T KOG0615|consen  176 ISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPD--SSYM  253 (475)
T ss_pred             eeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCC--ceEE
Confidence            45889999999999998 4579999999998655443221  12234579999999999999999999999887  6799


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCC---CceEecccCchhhh
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED---YAAKLSDLSFWNEI  527 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~---~~~kl~DfGla~~~  527 (664)
                      |+|||++|+|.+++-.  ...+....-..++.|++.|+.|||+.+  |+||||||+|||+..+   ..+||+|||+|+..
T Consensus       254 VlE~v~GGeLfd~vv~--nk~l~ed~~K~~f~Qll~avkYLH~~G--I~HRDiKPeNILl~~~~e~~llKItDFGlAK~~  329 (475)
T KOG0615|consen  254 VLEYVEGGELFDKVVA--NKYLREDLGKLLFKQLLTAVKYLHSQG--IIHRDIKPENILLSNDAEDCLLKITDFGLAKVS  329 (475)
T ss_pred             EEEEecCccHHHHHHh--ccccccchhHHHHHHHHHHHHHHHHcC--cccccCCcceEEeccCCcceEEEecccchhhcc
Confidence            9999999999999863  345666677889999999999999999  9999999999999866   78999999999988


Q ss_pred             hhh--------hhhcccccccCCCC---CCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCC
Q 006019          528 AMA--------EMAATSKKLSSAPS---ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  596 (664)
Q Consensus       528 ~~~--------~~~~~~pe~~~~~~---~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  596 (664)
                      ...        +..|.+||......   +..|.|+||+|||||-++||..||....+.. ....++..+...+...    
T Consensus       330 g~~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~-sl~eQI~~G~y~f~p~----  404 (475)
T KOG0615|consen  330 GEGSFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDP-SLKEQILKGRYAFGPL----  404 (475)
T ss_pred             ccceehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcccccCCc-cHHHHHhcCcccccCh----
Confidence            532        34556788765433   2347899999999999999999996433221 1122233332222211    


Q ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          597 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       597 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                         .-.+..++..+++.+++..||++||++.|+++
T Consensus       405 ---~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~  436 (475)
T KOG0615|consen  405 ---QWDRISEEALDLINWMLVVDPENRPSADEALN  436 (475)
T ss_pred             ---hhhhhhHHHHHHHHHhhEeCcccCcCHHHHhc
Confidence               12345578999999999999999999999875

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=5.8e-39  Score=326.52  Aligned_cols=240  Identities=30%  Similarity=0.493  Sum_probs=187.8

Q ss_pred             hhcccccCCCeEEEEEEEC-----CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          374 FSNVIGSSPIGTVYKGTLS-----NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-----~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      +.+.||.|.||.||+|.+.     .+..|+||.+...    ......++|.+|++.+++++||||++++|+|...+  ..
T Consensus         3 ~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~----~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~--~~   76 (259)
T PF07714_consen    3 LIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPS----SSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENE--PL   76 (259)
T ss_dssp             EEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTT----SSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSS--SE
T ss_pred             EeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccc----cccccceeeeecccccccccccccccccccccccc--cc
Confidence            3478999999999999986     3578899888431    12344688999999999999999999999999666  46


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++|+||+++|+|.++++......+++.++.+|+.|+++||+|||+.+  ++|+||+++||++++++.+||+|||+++...
T Consensus        77 ~lv~e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~~--iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~  154 (259)
T PF07714_consen   77 FLVMEYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSNN--IIHGNLSPSNILLDSNGQVKLSDFGLSRPIS  154 (259)
T ss_dssp             EEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTT--EEEST-SGGGEEEETTTEEEEESTTTGEETT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccc
Confidence            99999999999999998765678999999999999999999999998  9999999999999999999999999987762


Q ss_pred             h-----------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCC
Q 006019          529 M-----------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  596 (664)
Q Consensus       529 ~-----------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  596 (664)
                      .           ....+.+||......++.++||||||+++|||+| |+.||.  +....++....... ..        
T Consensus       155 ~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~--~~~~~~~~~~~~~~-~~--------  223 (259)
T PF07714_consen  155 EKSKYKNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFS--DYDNEEIIEKLKQG-QR--------  223 (259)
T ss_dssp             TSSSEEESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTT--TSCHHHHHHHHHTT-EE--------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccc-cc--------
Confidence            1           1233456776666668999999999999999999 788983  33444444444222 11        


Q ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 006019          597 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL  633 (664)
Q Consensus       597 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L  633 (664)
                       ...+..++..+.+++.+||+.+|++||+|.++++.|
T Consensus       224 -~~~~~~~~~~~~~li~~C~~~~p~~RPs~~~i~~~L  259 (259)
T PF07714_consen  224 -LPIPDNCPKDIYSLIQQCWSHDPEKRPSFQEILQEL  259 (259)
T ss_dssp             -TTSBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred             -ceeccchhHHHHHHHHHHcCCChhhCcCHHHHHhcC
Confidence             111223346688999999999999999999999886

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.2e-39  Score=306.51  Aligned_cols=247  Identities=22%  Similarity=0.318  Sum_probs=200.4

Q ss_pred             hhcccccCCCeEEEEEE-ECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.++||+|.||.|||+. +.+|..+|.|.+.-...   .....++...|+.+|++++|||||++++.....+....+|||
T Consensus        23 Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~m---d~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlnivm   99 (375)
T KOG0591|consen   23 ILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMM---DAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIVM   99 (375)
T ss_pred             HHHHHcCCcchheEEeeeccCcchhhhhhcchhhc---cHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHHH
Confidence            34789999999999998 67899999999873332   245567899999999999999999999844332222478999


Q ss_pred             EecCCCChhhhhcc--cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC--eEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          453 EYAPNGTLFEHIHI--KESEHLDWGMRLRIAMGMAYCLEHMHQLNPP--IAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       453 Ey~~~GsL~~~l~~--~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~--ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      |||..|+|...+..  +....++.....++..|+++||.++|..-|.  |+||||||.||+|+.+|.+|++|||+++.+.
T Consensus       100 E~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~l~  179 (375)
T KOG0591|consen  100 ELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGLGRFLS  179 (375)
T ss_pred             HhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeeccchhHhHhc
Confidence            99999999988752  3566789999999999999999999985554  9999999999999999999999999999885


Q ss_pred             hh---------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 006019          529 MA---------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  599 (664)
Q Consensus       529 ~~---------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  599 (664)
                      ..         +.++++||......++.||||||+||++|||..-+.||.++  ++.+....+.++          ..+.
T Consensus       180 s~~tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~--n~~~L~~KI~qg----------d~~~  247 (375)
T KOG0591|consen  180 SKTTFAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGD--NLLSLCKKIEQG----------DYPP  247 (375)
T ss_pred             chhHHHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccc--cHHHHHHHHHcC----------CCCC
Confidence            33         34566788888889999999999999999999999999543  555555544433          2233


Q ss_pred             CC-HHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHh
Q 006019          600 FD-EEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  635 (664)
Q Consensus       600 ~~-~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~  635 (664)
                      .+ +..+..+..++..|+..||+.||+...+++.+..
T Consensus       248 ~p~~~YS~~l~~li~~ci~vd~~~RP~t~~~v~di~~  284 (375)
T KOG0591|consen  248 LPDEHYSTDLRELINMCIAVDPEQRPDTVPYVQDIQS  284 (375)
T ss_pred             CcHHHhhhHHHHHHHHHccCCcccCCCcchHHHHHHH
Confidence            34 5567789999999999999999996666665554

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=3.7e-38  Score=321.88  Aligned_cols=244  Identities=21%  Similarity=0.334  Sum_probs=194.5

Q ss_pred             hhhhcccccCCCeEEEEEEEC----CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCce
Q 006019          372 EDFSNVIGSSPIGTVYKGTLS----NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  447 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~~----~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  447 (664)
                      ..+.+.||+|+||.||+|.+.    .+..+|+|.++....    ......|.+|+.++++++||||++++|++...+  .
T Consensus         7 ~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~----~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~   80 (266)
T cd05064           7 IKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCS----DKQRRGFLAEALTLGQFDHSNIVRLEGVITRGN--T   80 (266)
T ss_pred             eEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCC----HHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCC--C
Confidence            345688999999999999863    356889998864321    234567999999999999999999999998776  6


Q ss_pred             eEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhh
Q 006019          448 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~  527 (664)
                      .++||||+++|+|.+++... ...++|..+.+++.+++.||+|||+++  ++||||||+||+++.++.+|++|||.+...
T Consensus        81 ~~lv~e~~~~~~L~~~l~~~-~~~l~~~~~~~~~~~i~~al~~lH~~~--iiH~dikp~nili~~~~~~~l~dfg~~~~~  157 (266)
T cd05064          81 MMIVTEYMSNGALDSFLRKH-EGQLVAGQLMGMLPGLASGMKYLSEMG--YVHKGLAAHKVLVNSDLVCKISGFRRLQED  157 (266)
T ss_pred             cEEEEEeCCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHHCC--EeeccccHhhEEEcCCCcEEECCCcccccc
Confidence            79999999999999998643 357899999999999999999999998  999999999999999999999999986543


Q ss_pred             hhh----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCC
Q 006019          528 AMA----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  596 (664)
Q Consensus       528 ~~~----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  596 (664)
                      ...          ...+.+||......++.++|||||||++||+++ |+.||...  ...+.......+ ..        
T Consensus       158 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~--~~~~~~~~~~~~-~~--------  226 (266)
T cd05064         158 KSEAIYTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDM--SGQDVIKAVEDG-FR--------  226 (266)
T ss_pred             cccchhcccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcC--CHHHHHHHHHCC-CC--------
Confidence            211          123557887777788999999999999999876 99999432  222322222211 10        


Q ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 006019          597 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  636 (664)
Q Consensus       597 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i  636 (664)
                       ...+..++..+.+++.+||+.+|++||++.+|.+.|+++
T Consensus       227 -~~~~~~~~~~~~~li~~c~~~~p~~RP~~~~i~~~l~~~  265 (266)
T cd05064         227 -LPAPRNCPNLLHQLMLDCWQKERGERPRFSQIHSILSKM  265 (266)
T ss_pred             -CCCCCCCCHHHHHHHHHHcCCCchhCCCHHHHHHHHHhh
Confidence             112233456789999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=6.3e-38  Score=317.35  Aligned_cols=243  Identities=22%  Similarity=0.315  Sum_probs=191.1

Q ss_pred             hcccccCCCeEEEEEEECC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||++...+ |...|||.+.....     ...+.+.+|+++|++++|||||+++|.....+....++.||
T Consensus        22 ~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~-----~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~mE   96 (313)
T KOG0198|consen   22 GKLLGRGSFGSVYLATNKKTGELMAVKSVELEDS-----PTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFME   96 (313)
T ss_pred             hccccCccceEEEEEEecCCCcceeeeeeecccc-----hhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeeee
Confidence            4789999999999999754 89999999876521     11567899999999999999999999855443224689999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecC-CCceEecccCchhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE-DYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~-~~~~kl~DfGla~~~~~---  529 (664)
                      |+++|+|.+++..... .++.....+++.+|++||+|||+++  ||||||||+|||++. ++.+||+|||+++....   
T Consensus        97 y~~~GsL~~~~~~~g~-~l~E~~v~~ytr~iL~GL~ylHs~g--~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~~  173 (313)
T KOG0198|consen   97 YAPGGSLSDLIKRYGG-KLPEPLVRRYTRQILEGLAYLHSKG--IVHCDIKPANILLDPSNGDVKLADFGLAKKLESKGT  173 (313)
T ss_pred             ccCCCcHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHhCC--EeccCcccceEEEeCCCCeEEeccCccccccccccc
Confidence            9999999999975444 7999999999999999999999998  999999999999999 79999999999886642   


Q ss_pred             ---------hhhhcccccccCCC-CCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 006019          530 ---------AEMAATSKKLSSAP-SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  599 (664)
Q Consensus       530 ---------~~~~~~~pe~~~~~-~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  599 (664)
                               ....+++||....+ ....++|||||||++.||+||+.||... ....++........         ..+.
T Consensus       174 ~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~-~~~~~~~~~ig~~~---------~~P~  243 (313)
T KOG0198|consen  174 KSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEF-FEEAEALLLIGRED---------SLPE  243 (313)
T ss_pred             cccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhh-cchHHHHHHHhccC---------CCCC
Confidence                     12344567776643 3345999999999999999999999532 22223222222211         1123


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHh
Q 006019          600 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  635 (664)
Q Consensus       600 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~  635 (664)
                      .+...+.++.+++.+|++.+|++|||+.++++..-.
T Consensus       244 ip~~ls~~a~~Fl~~C~~~~p~~Rpta~eLL~hpf~  279 (313)
T KOG0198|consen  244 IPDSLSDEAKDFLRKCFKRDPEKRPTAEELLEHPFL  279 (313)
T ss_pred             CCcccCHHHHHHHHHHhhcCcccCcCHHHHhhChhh
Confidence            344455678999999999999999999999876544

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=1.8e-37  Score=323.19  Aligned_cols=249  Identities=23%  Similarity=0.344  Sum_probs=189.7

Q ss_pred             hhhcccccCCCeEEEEEEECC-----------------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccc
Q 006019          373 DFSNVIGSSPIGTVYKGTLSN-----------------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN  435 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~~-----------------~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~  435 (664)
                      .+.+.||+|+||.||++.+++                 +..||+|.+....    ......+|.+|++++.+++||||++
T Consensus         8 ~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~~E~~~l~~l~h~niv~   83 (304)
T cd05096           8 LFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDA----NKNARNDFLKEVKILSRLKDPNIIR   83 (304)
T ss_pred             eeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCC----CHHHHHHHHHHHHHHhhcCCCCeeE
Confidence            355789999999999998643                 3368999876432    1334568999999999999999999


Q ss_pred             eEEEEecCCCceeEEEEEecCCCChhhhhcccC-----------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCe
Q 006019          436 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE-----------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPI  498 (664)
Q Consensus       436 l~g~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~-----------------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~i  498 (664)
                      +++++.+.+  ..++||||+++|+|.+++....                 ...++|....+++.+++.||+|||+.+  |
T Consensus        84 ~~~~~~~~~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~--i  159 (304)
T cd05096          84 LLGVCVDED--PLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLN--F  159 (304)
T ss_pred             EEEEEecCC--ceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCC--c
Confidence            999998876  5699999999999999875321                 134788999999999999999999998  9


Q ss_pred             EEeCcCCCCeEecCCCceEecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh--CC
Q 006019          499 AHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT--GR  565 (664)
Q Consensus       499 vHrDLk~~NILld~~~~~kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t--G~  565 (664)
                      +||||||+|||+++++.+||+|||+++.....           ...+.+||......++.++||||||+++|||++  +.
T Consensus       160 vH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~  239 (304)
T cd05096         160 VHRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKE  239 (304)
T ss_pred             cccCcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCC
Confidence            99999999999999999999999998754221           223567887777778999999999999999997  56


Q ss_pred             CCccCCC-CChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHh
Q 006019          566 LPYLVDN-GSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  635 (664)
Q Consensus       566 ~P~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~  635 (664)
                      .||.... ....+.+.........  ..    ....+..++..+.+++.+||+.+|++||+|.+|++.|++
T Consensus       240 ~p~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~li~~cl~~~p~~RPs~~~i~~~l~~  304 (304)
T cd05096         240 QPYGELTDEQVIENAGEFFRDQGR--QV----YLFRPPPCPQGLYELMLQCWSRDCRERPSFSDIHAFLTE  304 (304)
T ss_pred             CCCCcCCHHHHHHHHHHHhhhccc--cc----cccCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHhC
Confidence            6774221 1111122111111100  00    011122344678999999999999999999999998864

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2e-38  Score=333.30  Aligned_cols=241  Identities=23%  Similarity=0.347  Sum_probs=198.9

Q ss_pred             hhcccccCCCeEEEEEEECC--C--cEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeE
Q 006019          374 FSNVIGSSPIGTVYKGTLSN--G--VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  449 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~--~--~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~  449 (664)
                      +.++||+|.||.|++|.|..  |  ..||||++......    ....+|++|+.+|-+++|+|+++|+|+..+.   -.+
T Consensus       114 l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~----~~mddflrEas~M~~L~H~hliRLyGvVl~q---p~m  186 (1039)
T KOG0199|consen  114 LYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLN----AIMDDFLREASHMLKLQHPHLIRLYGVVLDQ---PAM  186 (1039)
T ss_pred             HHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccc----hhHHHHHHHHHHHHhccCcceeEEeeeeccc---hhh
Confidence            34789999999999999853  4  46789988755432    2467899999999999999999999999873   358


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                      +|+|.++.|+|.+.|+......|-......++.|||.|+.||..++  +|||||.++|+||-..-.+||+|||+.|.+..
T Consensus       187 MV~ELaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLeskr--lvHRDLAARNlllasprtVKI~DFGLmRaLg~  264 (1039)
T KOG0199|consen  187 MVFELAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESKR--LVHRDLAARNLLLASPRTVKICDFGLMRALGE  264 (1039)
T ss_pred             HHhhhcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhhhh--hhhhhhhhhhheecccceeeeecccceeccCC
Confidence            9999999999999999756677888889999999999999999988  99999999999999999999999999998865


Q ss_pred             hhhh------------cccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCC
Q 006019          530 AEMA------------ATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  596 (664)
Q Consensus       530 ~~~~------------~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  596 (664)
                      .+..            +.+||-.....++.+||||+|||.+|||+| |+.||.+..+  .    ++++      .+-+..
T Consensus       265 ned~Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g--~----qIL~------~iD~~e  332 (1039)
T KOG0199|consen  265 NEDMYVMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRG--I----QILK------NIDAGE  332 (1039)
T ss_pred             CCcceEecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCCH--H----HHHH------hccccc
Confidence            4433            345677777889999999999999999999 9999943322  1    1111      122333


Q ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHh
Q 006019          597 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  635 (664)
Q Consensus       597 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~  635 (664)
                      ....++.|++.++++|+.||+.+|++||+|.+|++.+-.
T Consensus       333 rLpRPk~csedIY~imk~cWah~paDRptFsair~~~~l  371 (1039)
T KOG0199|consen  333 RLPRPKYCSEDIYQIMKNCWAHNPADRPTFSAIREDLVL  371 (1039)
T ss_pred             cCCCCCCChHHHHHHHHHhccCCccccccHHHHHHhHHH
Confidence            445678889999999999999999999999999855543

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.9e-37  Score=317.26  Aligned_cols=248  Identities=18%  Similarity=0.240  Sum_probs=189.4

Q ss_pred             cccccCCCeEEEEEE-ECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      ++||+|.||.||||+ ..+|+.||+|++.....+.   ....-..+||.+|++++||||++|.+...+...-..|||+||
T Consensus       123 ~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~---~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYlVFeY  199 (560)
T KOG0600|consen  123 EKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKE---GFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYLVFEY  199 (560)
T ss_pred             HHhcCcchhheeEeeecccCcEEEEEEeecccCCC---cchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEEEEec
Confidence            579999999999999 5689999999998766543   233456789999999999999999999988733368999999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhhh---
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE---  531 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~~---  531 (664)
                      |+. ||..++. .....++..+...++.|++.||+|+|+++  |+|||||.+|||||.+|.+||+|||+|+.+....   
T Consensus       200 Mdh-DL~GLl~-~p~vkft~~qIKc~mkQLl~Gl~~cH~~g--vlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~~~~  275 (560)
T KOG0600|consen  200 MDH-DLSGLLS-SPGVKFTEPQIKCYMKQLLEGLEYCHSRG--VLHRDIKGSNILIDNNGVLKIADFGLARFYTPSGSAP  275 (560)
T ss_pred             ccc-hhhhhhc-CCCcccChHHHHHHHHHHHHHHHHHhhcC--eeeccccccceEEcCCCCEEeccccceeeccCCCCcc
Confidence            988 8888875 34567999999999999999999999999  9999999999999999999999999999775332   


Q ss_pred             -------hhccccccc-CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHh-cCC---CCCc-------cc
Q 006019          532 -------MAATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYL-SGV---QPLQ-------QF  592 (664)
Q Consensus       532 -------~~~~~pe~~-~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~-~~~---~~~~-------~~  592 (664)
                             ..|.+||+. ....|+.+.|+||.||||.||++|+..|. ...++.+.-.-+- .+.   ....       ..
T Consensus       276 ~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~-G~tEveQl~kIfklcGSP~e~~W~~~kLP~~~~  354 (560)
T KOG0600|consen  276 YTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQ-GRTEVEQLHKIFKLCGSPTEDYWPVSKLPHATI  354 (560)
T ss_pred             cccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcC-CccHHHHHHHHHHHhCCCChhccccccCCcccc
Confidence                   234467755 45678999999999999999999998874 2223332211110 110   0000       01


Q ss_pred             cCCCC------CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          593 VDPTL------SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       593 ~d~~~------~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      +.+..      .+.....+...++|+...+..||++|.|+.++++
T Consensus       355 ~kp~~~y~r~l~E~~~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~  399 (560)
T KOG0600|consen  355 FKPQQPYKRRLRETFKDFPASALDLLEKLLSLDPDKRGTASSALQ  399 (560)
T ss_pred             cCCCCcccchHHHHhccCCHHHHHHHHHHhccCccccccHHHHhc
Confidence            11110      0001122345778999999999999999998775

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=5e-37  Score=329.05  Aligned_cols=247  Identities=23%  Similarity=0.343  Sum_probs=192.5

Q ss_pred             HhhhhcccccCCCeEEEEEEE------CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecC
Q 006019          371 CEDFSNVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEE  443 (664)
Q Consensus       371 ~~~~~~~iG~G~~G~Vy~g~~------~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~  443 (664)
                      ...+.+.||+|+||.||+|++      .++..||||+++....    ....+.+.+|+++++.+ +|||||+++|+|...
T Consensus        36 ~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~----~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~  111 (375)
T cd05104          36 RLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAH----LTEREALMSELKVLSYLGNHINIVNLLGACTVG  111 (375)
T ss_pred             HeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcC----cHHHHHHHHHHHHHHHhcCCcceeeeeeeeccC
Confidence            344568999999999999974      2356899998863321    22346789999999999 899999999999887


Q ss_pred             CCceeEEEEEecCCCChhhhhcccC-------------------------------------------------------
Q 006019          444 EPFTRMMVFEYAPNGTLFEHIHIKE-------------------------------------------------------  468 (664)
Q Consensus       444 ~~~~~~lV~Ey~~~GsL~~~l~~~~-------------------------------------------------------  468 (664)
                      +  ..++||||+++|+|.++++...                                                       
T Consensus       112 ~--~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  189 (375)
T cd05104         112 G--PTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSV  189 (375)
T ss_pred             C--cceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCccccccccccccccc
Confidence            7  6699999999999999886321                                                       


Q ss_pred             ------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh
Q 006019          469 ------------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  530 (664)
Q Consensus       469 ------------------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~  530 (664)
                                        ...++|..+.+++.+++.||+|||+.+  ++||||||+|||+++++.+||+|||+++.....
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~--ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~  267 (375)
T cd05104         190 RSGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASKN--CIHRDLAARNILLTHGRITKICDFGLARDIRND  267 (375)
T ss_pred             ccceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCchhhEEEECCCcEEEecCccceeccCc
Confidence                              124789999999999999999999988  999999999999999999999999998755321


Q ss_pred             -----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 006019          531 -----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       531 -----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                                 ...+.+||......++.++|||||||++|||+| |+.||..... ...+. ..+......   .     
T Consensus       268 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~-~~~~~-~~~~~~~~~---~-----  337 (375)
T cd05104         268 SNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPV-DSKFY-KMIKEGYRM---L-----  337 (375)
T ss_pred             ccccccCCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCc-hHHHH-HHHHhCccC---C-----
Confidence                       123567888777788999999999999999998 8889843221 11111 122111100   0     


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 006019          599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  636 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i  636 (664)
                       .+...+.++.+++.+||+.||++||+|.||++.|++.
T Consensus       338 -~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~l~~~  374 (375)
T cd05104         338 -SPECAPSEMYDIMKSCWDADPLKRPTFKQIVQLIEQQ  374 (375)
T ss_pred             -CCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHhh
Confidence             1112235688999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-38  Score=336.94  Aligned_cols=243  Identities=20%  Similarity=0.318  Sum_probs=198.5

Q ss_pred             hcccccCCCeEEEEEEE-CCC----cEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeE
Q 006019          375 SNVIGSSPIGTVYKGTL-SNG----VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  449 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~-~~~----~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~  449 (664)
                      .++||+|+||.||||.| +.|    .+||+|++.....    ....++|.+|+-+|.+++|||++||+|+|....   .+
T Consensus       701 ~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~----~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~---~q  773 (1177)
T KOG1025|consen  701 DKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTS----PKASIELLDEALRMASLDHPNLLRLLGVCMLST---LQ  773 (1177)
T ss_pred             hceeccccceeEEeeeEecCCceecceeEEEEeeccCC----chhhHHHHHHHHHHhcCCCchHHHHhhhcccch---HH
Confidence            47899999999999996 444    3577777654332    334678999999999999999999999998764   57


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                      ||++|||.|+|.|+++. ....+.-...+.|..|||+|+.|||+++  +|||||.++|||+.+-..+||.|||+++.+..
T Consensus       774 lvtq~mP~G~LlDyvr~-hr~~igsq~lLnw~~QIAkgM~YLe~qr--lVHrdLaaRNVLVksP~hvkitdfgla~ll~~  850 (1177)
T KOG1025|consen  774 LVTQLMPLGCLLDYVRE-HRDNIGSQDLLNWCYQIAKGMKYLEEQR--LVHRDLAARNVLVKSPNHVKITDFGLAKLLAP  850 (1177)
T ss_pred             HHHHhcccchHHHHHHH-hhccccHHHHHHHHHHHHHHHHHHHhcc--hhhhhhhhhheeecCCCeEEEEecchhhccCc
Confidence            99999999999999985 4567888889999999999999999998  99999999999999999999999999999876


Q ss_pred             hhhhcccc-----------cccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 006019          530 AEMAATSK-----------KLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  597 (664)
Q Consensus       530 ~~~~~~~p-----------e~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  597 (664)
                      ....+.++           |...-+.++.++|||||||.+||++| |..||.+  ... +.+.+.+..         +..
T Consensus       851 d~~ey~~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~g--i~~-~eI~dlle~---------geR  918 (1177)
T KOG1025|consen  851 DEKEYSAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDG--IPA-EEIPDLLEK---------GER  918 (1177)
T ss_pred             ccccccccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCC--CCH-HHhhHHHhc---------ccc
Confidence            65544432           33455678999999999999999999 9999942  222 222222222         122


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          598 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       598 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                      ...|+.+...++.+|.+||..|++.||+|+++...+.++...
T Consensus       919 LsqPpiCtiDVy~~mvkCwmid~~~rp~fkel~~~fs~~ard  960 (1177)
T KOG1025|consen  919 LSQPPICTIDVYMVMVKCWMIDADSRPTFKELAEEFSRMARD  960 (1177)
T ss_pred             CCCCCCccHHHHHHHHHHhccCcccCccHHHHHHHHHHHhcC
Confidence            345677778899999999999999999999999999988653

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.1e-37  Score=314.02  Aligned_cols=246  Identities=22%  Similarity=0.342  Sum_probs=198.4

Q ss_pred             HHHhhhhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          369 AACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       369 ~~~~~~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      +....+.+.||+|+||.||+|...++..||+|.+.....      ..++|.+|++++++++|+||+++++++...+  ..
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~~------~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~   76 (261)
T cd05068           5 RTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTM------DPKDFLAEAQIMKKLRHPKLIQLYAVCTLEE--PI   76 (261)
T ss_pred             hhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCcc------cHHHHHHHHHHHHHCCCCCccceeEEEecCC--Ce
Confidence            334455689999999999999988888899998864321      2467999999999999999999999998776  67


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++||||+++++|.+++.......++|..+.+++.+++.|+.|||+.+  ++||||||+||++++++.+||+|||+++...
T Consensus        77 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~  154 (261)
T cd05068          77 YIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQN--YIHRDLAARNVLVGENNICKVADFGLARVIK  154 (261)
T ss_pred             eeeeecccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeeccCCcceEEEcCCCCEEECCcceEEEcc
Confidence            99999999999999997555567899999999999999999999988  9999999999999999999999999987653


Q ss_pred             hh----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 006019          529 MA----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  597 (664)
Q Consensus       529 ~~----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  597 (664)
                      ..          ...+.+||+.....++.++||||||+++|||+| |+.||...  ...+........ ...        
T Consensus       155 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~--~~~~~~~~~~~~-~~~--------  223 (261)
T cd05068         155 EDIYEAREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGM--TNAEVLQQVDQG-YRM--------  223 (261)
T ss_pred             CCcccccCCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHHcC-CCC--------
Confidence            21          123567887777788999999999999999999 99998432  222222222111 110        


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 006019          598 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  636 (664)
Q Consensus       598 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i  636 (664)
                       ..+...+..+.+++.+||+.+|++||++.++.+.|+++
T Consensus       224 -~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~l~~~l~~~  261 (261)
T cd05068         224 -PCPPGCPKELYDIMLDCWKEDPDDRPTFETLQWKLEDF  261 (261)
T ss_pred             -CCCCcCCHHHHHHHHHHhhcCcccCCCHHHHHHHHhcC
Confidence             11223346789999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=1.2e-36  Score=310.19  Aligned_cols=242  Identities=21%  Similarity=0.355  Sum_probs=196.9

Q ss_pred             hhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      .+.+.||+|+||.||+|... .+..+++|.+....      ....++.+|++++++++|+||+++++++...+  ..++|
T Consensus         9 ~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~------~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv   80 (263)
T cd05052           9 TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT------MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP--PFYII   80 (263)
T ss_pred             EEeeecCCcccceEEEEEEecCCceEEEEEecCCc------hHHHHHHHHHHHHHhCCCCChhheEEEEcCCC--CcEEE
Confidence            34578999999999999965 47889999875321      22467999999999999999999999998776  56899


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh-
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  530 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~-  530 (664)
                      |||+++|+|.+++.......+++..+..++.+++.||+|||+.+  ++||||||+||++++++.+||+|||+++..... 
T Consensus        81 ~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~--i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~  158 (263)
T cd05052          81 TEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT  158 (263)
T ss_pred             EEeCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhCC--EeecccCcceEEEcCCCcEEeCCCccccccccce
Confidence            99999999999987555567999999999999999999999988  999999999999999999999999998765422 


Q ss_pred             ---------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 006019          531 ---------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  600 (664)
Q Consensus       531 ---------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  600 (664)
                               ...+.+||......++.++|||||||++|||+| |+.||..  ....+..........       +   ..
T Consensus       159 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~--~~~~~~~~~~~~~~~-------~---~~  226 (263)
T cd05052         159 YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELLEKGYR-------M---ER  226 (263)
T ss_pred             eeccCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCC--CCHHHHHHHHHCCCC-------C---CC
Confidence                     123567887777788999999999999999998 9999843  233333333222110       0   11


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 006019          601 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  636 (664)
Q Consensus       601 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i  636 (664)
                      +...+.++.+++.+||+.+|++||++.+++++|+.+
T Consensus       227 ~~~~~~~~~~li~~cl~~~p~~Rp~~~~l~~~l~~~  262 (263)
T cd05052         227 PEGCPPKVYELMRACWQWNPSDRPSFAEIHQAFETM  262 (263)
T ss_pred             CCCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHhh
Confidence            223346789999999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=2.1e-36  Score=307.00  Aligned_cols=237  Identities=22%  Similarity=0.377  Sum_probs=191.5

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.+.||+|+||.||++++.++..+|+|.+....      ....+|.+|++++++++||||+++++++...+  ..++|||
T Consensus         8 ~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~------~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~iv~e   79 (256)
T cd05114           8 FMKELGSGQFGVVHLGKWRAQIKVAIKAINEGA------MSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQK--PLYIVTE   79 (256)
T ss_pred             EeeEecCCcCceEEEEEeccCceEEEEecccCC------ccHHHHHHHHHHHHHCCCCCceeEEEEEccCC--CEEEEEE
Confidence            447899999999999999888889999875322      12467899999999999999999999998776  5799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      |+++|+|.++++... ..++|..+.+++.+++.||+|||+.+  ++||||||+||++++++.+||+|||+++.....   
T Consensus        80 ~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~~  156 (256)
T cd05114          80 FMENGCLLNYLRQRQ-GKLSKDMLLSMCQDVCEGMEYLERNS--FIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYT  156 (256)
T ss_pred             cCCCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHHHHCC--ccccccCcceEEEcCCCeEEECCCCCccccCCCcee
Confidence            999999999987433 46899999999999999999999998  999999999999999999999999988754211   


Q ss_pred             -------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          531 -------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       531 -------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                             ...+.+||......++.++||||||+++|||+| |+.||..  ....+.......+..    ...+      .
T Consensus       157 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~--~~~~~~~~~i~~~~~----~~~~------~  224 (256)
T cd05114         157 SSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEK--KSNYEVVEMISRGFR----LYRP------K  224 (256)
T ss_pred             ccCCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCC--CCHHHHHHHHHCCCC----CCCC------C
Confidence                   123567887777778899999999999999999 8999843  223333333322211    1111      1


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 006019          603 EQLETLGELIKSCVRADPEKRPTMRDIAAIL  633 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L  633 (664)
                      .....+.+++.+||+.+|++||+|.++++.|
T Consensus       225 ~~~~~~~~li~~c~~~~p~~Rps~~~l~~~l  255 (256)
T cd05114         225 LASMTVYEVMYSCWHEKPEGRPTFAELLRAI  255 (256)
T ss_pred             CCCHHHHHHHHHHccCCcccCcCHHHHHHhh
Confidence            1235689999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=100.00  E-value=2.8e-37  Score=330.74  Aligned_cols=250  Identities=22%  Similarity=0.350  Sum_probs=193.5

Q ss_pred             HHHhhhhcccccCCCeEEEEEEEC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEe
Q 006019          369 AACEDFSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCE  441 (664)
Q Consensus       369 ~~~~~~~~~iG~G~~G~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~  441 (664)
                      ....++.+.||+|+||.||+|+..      ++..||+|++.....    ......+.+|+++++.+ +|+|||+++|+|.
T Consensus        37 ~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~----~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~  112 (374)
T cd05106          37 RDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAH----TDEREALMSELKILSHLGQHKNIVNLLGACT  112 (374)
T ss_pred             HHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCC----HHHHHHHHHHHHHHHhhccCCceeeEeeEec
Confidence            333445689999999999998842      235799998864322    22346788999999999 8999999999998


Q ss_pred             cCCCceeEEEEEecCCCChhhhhcccC-----------------------------------------------------
Q 006019          442 EEEPFTRMMVFEYAPNGTLFEHIHIKE-----------------------------------------------------  468 (664)
Q Consensus       442 ~~~~~~~~lV~Ey~~~GsL~~~l~~~~-----------------------------------------------------  468 (664)
                      ..+  ..++||||+++|+|.++++...                                                     
T Consensus       113 ~~~--~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (374)
T cd05106         113 HGG--PVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSS  190 (374)
T ss_pred             CCC--CeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCcccc
Confidence            877  6799999999999999875321                                                     


Q ss_pred             ---------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          469 ---------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       469 ---------------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                                     ...+++....+|+.+++.||+|||+++  |+||||||+|||+++++.+||+|||+++.....   
T Consensus       191 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~g--iiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~  268 (374)
T cd05106         191 SSQSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASKN--CIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNY  268 (374)
T ss_pred             ccccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHCC--EEeccCchheEEEeCCCeEEEeeceeeeeccCCcce
Confidence                           124788899999999999999999998  999999999999999999999999998754221   


Q ss_pred             --------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 006019          531 --------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  601 (664)
Q Consensus       531 --------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  601 (664)
                              ...+.+||......++.++|||||||++|||+| |+.||...... ... ........   ....      +
T Consensus       269 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~-~~~-~~~~~~~~---~~~~------~  337 (374)
T cd05106         269 VVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVN-SKF-YKMVKRGY---QMSR------P  337 (374)
T ss_pred             eeccCCCCccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCcccccc-HHH-HHHHHccc---CccC------C
Confidence                    123567887777788999999999999999998 99999532211 111 11111110   0001      1


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhh
Q 006019          602 EEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  637 (664)
Q Consensus       602 ~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~  637 (664)
                      ...+.++.+++.+||+.||++||++.+|++.|+++.
T Consensus       338 ~~~~~~l~~li~~cl~~dp~~RPs~~~l~~~l~~~~  373 (374)
T cd05106         338 DFAPPEIYSIMKMCWNLEPTERPTFSQISQLIQRQL  373 (374)
T ss_pred             CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHh
Confidence            112356889999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=4e-37  Score=305.82  Aligned_cols=230  Identities=22%  Similarity=0.299  Sum_probs=191.2

Q ss_pred             hcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .++||+|+||+||.++- ++++.+|+|++++.....  ....+...+|..+|.+++||.||++.-.+++.+  ..|+|+|
T Consensus        30 lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~--~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~--kLylVld  105 (357)
T KOG0598|consen   30 LKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVE--KKEVRHTKAERNILSKIKHPFIVKLIYSFQTEE--KLYLVLD  105 (357)
T ss_pred             eeeeeccCCceEEEEEEcccCceeehhhhhhhHhhh--hhhHHHHHHHHHHHHhCCCCcEeeeEEecccCC--eEEEEEe
Confidence            38999999999999995 468999999997655433  234567889999999999999999988888777  7899999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+.||.|+.+|.  ....++.....-++..|+.||.|||+.+  ||||||||+|||||++|.++|+|||+++....    
T Consensus       106 ~~~GGeLf~hL~--~eg~F~E~~arfYlaEi~lAL~~LH~~g--IiyRDlKPENILLd~~GHi~LtDFgL~k~~~~~~~~  181 (357)
T KOG0598|consen  106 YLNGGELFYHLQ--REGRFSEDRARFYLAEIVLALGYLHSKG--IIYRDLKPENILLDEQGHIKLTDFGLCKEDLKDGDA  181 (357)
T ss_pred             ccCCccHHHHHH--hcCCcchhHHHHHHHHHHHHHHHHHhCC--eeeccCCHHHeeecCCCcEEEeccccchhcccCCCc
Confidence            999999999986  4567888888888999999999999999  99999999999999999999999999986532    


Q ss_pred             -----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          530 -----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       530 -----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                           ++..+.+||+.....++..+|.||+||++|||+||..||.  ..+..++...+..+.          +...+...
T Consensus       182 t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~--~~~~~~~~~~I~~~k----------~~~~p~~l  249 (357)
T KOG0598|consen  182 TRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFY--AEDVKKMYDKILKGK----------LPLPPGYL  249 (357)
T ss_pred             cccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCc--CccHHHHHHHHhcCc----------CCCCCccC
Confidence                 1245667888888899999999999999999999999994  445566666665543          11112223


Q ss_pred             HHHHHHHHHHhccCCCCCCC
Q 006019          605 LETLGELIKSCVRADPEKRP  624 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RP  624 (664)
                      ..+..+++.+.++.||++|-
T Consensus       250 s~~ardll~~LL~rdp~~RL  269 (357)
T KOG0598|consen  250 SEEARDLLKKLLKRDPRQRL  269 (357)
T ss_pred             CHHHHHHHHHHhccCHHHhc
Confidence            35688999999999999996

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=3.9e-37  Score=313.22  Aligned_cols=241  Identities=22%  Similarity=0.399  Sum_probs=195.1

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.+.||+|+||.||+|...++..+++|.+....      ...+.|.+|+.++++++|+||+++++++...+  ..+++||
T Consensus        10 ~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~------~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~e   81 (261)
T cd05072          10 LVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGT------MSVQAFLEEANLMKTLQHDKLVRLYAVVTKEE--PIYIITE   81 (261)
T ss_pred             EeeecCCcCCceEEEEEecCCceEEEEEccCCc------hhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCC--CcEEEEe
Confidence            447899999999999998888889999875322      12467999999999999999999999998776  5699999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      |+++|+|.++++......+++.++..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++.....   
T Consensus        82 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~~--i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~  159 (261)
T cd05072          82 YMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKN--YIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYT  159 (261)
T ss_pred             cCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeccccchhhEEecCCCcEEECCCccceecCCCcee
Confidence            999999999997655667899999999999999999999988  999999999999999999999999998765321   


Q ss_pred             -------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          531 -------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       531 -------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                             ...+.+||+.....++.++|||||||++|||+| |+.||....  ..+........ ...     +.    ..
T Consensus       160 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~--~~~~~~~~~~~-~~~-----~~----~~  227 (261)
T cd05072         160 AREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMS--NSDVMSALQRG-YRM-----PR----ME  227 (261)
T ss_pred             ccCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCC--HHHHHHHHHcC-CCC-----CC----CC
Confidence                   123556787777778899999999999999999 999984322  22222222111 110     11    11


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 006019          603 EQLETLGELIKSCVRADPEKRPTMRDIAAILREI  636 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i  636 (664)
                      ..+.++.+++.+||+.+|++||+++++.+.|+++
T Consensus       228 ~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  261 (261)
T cd05072         228 NCPDELYDIMKTCWKEKAEERPTFDYLQSVLDDF  261 (261)
T ss_pred             CCCHHHHHHHHHHccCCcccCcCHHHHHHHHhcC
Confidence            2335688999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=8.2e-37  Score=293.72  Aligned_cols=246  Identities=17%  Similarity=0.271  Sum_probs=185.8

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      .++|+|+||.|||++.+ +|+.||||++......   +...+-.++|+++|++++|+|+|.|+.+|....  ..+||+||
T Consensus         8 gkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd---~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkr--klhLVFE~   82 (396)
T KOG0593|consen    8 GKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDD---PVVKKIALREIRMLKQLKHENLVNLIEVFRRKR--KLHLVFEY   82 (396)
T ss_pred             hccccCcceEEEEeccCCcccEEEEEeeccCCcc---HHHHHHHHHHHHHHHhcccchHHHHHHHHHhcc--eeEEEeee
Confidence            46999999999999975 5999999999654322   345566789999999999999999999998877  67999999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhhh---
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE---  531 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~~---  531 (664)
                      |+.--|.+ |. +....++.....++..|+++|+.|+|+.+  +|||||||+|||++.++.+|++|||+|+.+....   
T Consensus        83 ~dhTvL~e-Le-~~p~G~~~~~vk~~l~Q~l~ai~~cHk~n--~IHRDIKPENILit~~gvvKLCDFGFAR~L~~pgd~Y  158 (396)
T KOG0593|consen   83 CDHTVLHE-LE-RYPNGVPSELVKKYLYQLLKAIHFCHKNN--CIHRDIKPENILITQNGVVKLCDFGFARTLSAPGDNY  158 (396)
T ss_pred             cchHHHHH-HH-hccCCCCHHHHHHHHHHHHHHhhhhhhcC--eecccCChhheEEecCCcEEeccchhhHhhcCCcchh
Confidence            98844444 32 24456888889999999999999999999  9999999999999999999999999999886222   


Q ss_pred             ------hhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHH--HH-----------hcCCCCCcc
Q 006019          532 ------MAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAA--DY-----------LSGVQPLQQ  591 (664)
Q Consensus       532 ------~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~--~~-----------~~~~~~~~~  591 (664)
                            ..+.+||+..+ ..|....||||.||++.||+||..-|. ...++.+...  ..           ......+..
T Consensus       159 TDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~P-G~SDiDQLy~I~ktLG~L~prhq~iF~~N~~F~G  237 (396)
T KOG0593|consen  159 TDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWP-GRSDIDQLYLIRKTLGNLIPRHQSIFSSNPFFHG  237 (396)
T ss_pred             hhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCC-CcchHHHHHHHHHHHcccCHHHHHHhccCCceee
Confidence                  23346776544 678899999999999999999987663 3333333221  11           111111111


Q ss_pred             ccCCCCCC------CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          592 FVDPTLSS------FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       592 ~~d~~~~~------~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      +.-|....      ..+....-+.+++..|++.||++|++-++++.
T Consensus       238 v~lP~~~~~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll~  283 (396)
T KOG0593|consen  238 VRLPEPEHPEPLERKYPKISNVLLDLLKKCLKMDPDDRLSCEQLLH  283 (396)
T ss_pred             eecCCCCCccchhhhcccchHHHHHHHHHHhcCCccccccHHHHhc
Confidence            11111110      11223346789999999999999999988864

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2e-36  Score=305.32  Aligned_cols=247  Identities=18%  Similarity=0.276  Sum_probs=194.4

Q ss_pred             hhhcccccCCCeEEEEEE-ECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      ++.+.||.|..+.||+|+ .+.+..||||++.......    ....+.+|+..|+.++||||++++..+..+.  ..++|
T Consensus        29 eL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~----~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~--~LWvV  102 (516)
T KOG0582|consen   29 ELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNN----DLDALRKEVQTMSLIDHPNIVTYHCSFVVDS--ELWVV  102 (516)
T ss_pred             eEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhh----hHHHHHHHHHHhhhcCCCCcceEEEEEEecc--eeEEe
Confidence            345789999999999999 4678999999998766543    2578999999999999999999999998877  78999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh--
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM--  529 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~--  529 (664)
                      |.||.+||+.+.+...-...++.....-|.+++++||.|||+.+  .||||+|+.|||||++|.+||+|||.+..+..  
T Consensus       103 mpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~G--~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~G  180 (516)
T KOG0582|consen  103 MPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQNG--HIHRDVKAGNILIDSDGTVKLADFGVSASLFDSG  180 (516)
T ss_pred             ehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhcC--ceecccccccEEEcCCCcEEEcCceeeeeecccC
Confidence            99999999999997665666999999999999999999999999  99999999999999999999999997654421  


Q ss_pred             -----------hhhhcccccccC--CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCC
Q 006019          530 -----------AEMAATSKKLSS--APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  596 (664)
Q Consensus       530 -----------~~~~~~~pe~~~--~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  596 (664)
                                 ....+.+||..+  ...|+.|+|||||||...||.+|..||.  .....+.....+++......  -..
T Consensus       181 ~R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~--k~pPmkvLl~tLqn~pp~~~--t~~  256 (516)
T KOG0582|consen  181 DRQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFS--KYPPMKVLLLTLQNDPPTLL--TSG  256 (516)
T ss_pred             ceeeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcc--cCChHHHHHHHhcCCCCCcc--ccc
Confidence                       223445666532  3347899999999999999999999993  23333333333333221111  000


Q ss_pred             CC-CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          597 LS-SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       597 ~~-~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      +. +........+.+++..|+++||.+|||++++++
T Consensus       257 ~~~d~~k~~~ksf~e~i~~CL~kDP~kRptAskLlk  292 (516)
T KOG0582|consen  257 LDKDEDKKFSKSFREMIALCLVKDPSKRPTASKLLK  292 (516)
T ss_pred             CChHHhhhhcHHHHHHHHHHhhcCcccCCCHHHHhc
Confidence            00 111233457889999999999999999999875

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=1.3e-36  Score=287.90  Aligned_cols=248  Identities=18%  Similarity=0.259  Sum_probs=194.1

Q ss_pred             hcccccCCCeEEEEEE-ECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.+|+|.||.||+|+ ..+|+.||||+++....++   .......+|++.|+.++|+||+.++.++...+  ...||+|
T Consensus         7 ~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kd---Gi~~talREIK~Lqel~h~nIi~LiD~F~~~~--~l~lVfE   81 (318)
T KOG0659|consen    7 LEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKD---GINRTALREIKLLQELKHPNIIELIDVFPHKS--NLSLVFE   81 (318)
T ss_pred             hhhhcCcceEEEEEEEecCCCcEEEEEEeecccccc---CccHHHHHHHHHHHHccCcchhhhhhhccCCC--ceEEEEE
Confidence            3679999999999999 4579999999999876654   34466789999999999999999999998877  6789999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      ||+. +|+..++. +...++......++.++.+|++|+|++.  |+||||||.|+|+++++.+||+|||+++.+...   
T Consensus        82 fm~t-dLe~vIkd-~~i~l~pa~iK~y~~m~LkGl~y~H~~~--IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~~~  157 (318)
T KOG0659|consen   82 FMPT-DLEVVIKD-KNIILSPADIKSYMLMTLKGLAYCHSKW--ILHRDLKPNNLLISSDGQLKIADFGLARFFGSPNRI  157 (318)
T ss_pred             eccc-cHHHHhcc-cccccCHHHHHHHHHHHHHHHHHHHhhh--hhcccCCccceEEcCCCcEEeecccchhccCCCCcc
Confidence            9987 99988874 4567889999999999999999999999  999999999999999999999999999988532   


Q ss_pred             ------hhhccccccc-CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCC----------CCCcccc
Q 006019          531 ------EMAATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV----------QPLQQFV  593 (664)
Q Consensus       531 ------~~~~~~pe~~-~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~----------~~~~~~~  593 (664)
                            +..+.+||+. .+..|+...||||.|||+.||+-|. ||..+..++.+...-+-.-.          ..+.+.+
T Consensus       158 ~~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~-P~fpG~sDidQL~~If~~LGTP~~~~WP~~~~lpdY~  236 (318)
T KOG0659|consen  158 QTHQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRV-PFFPGDSDIDQLSKIFRALGTPTPDQWPEMTSLPDYV  236 (318)
T ss_pred             cccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccC-CCCCCCchHHHHHHHHHHcCCCCcccCccccccccHH
Confidence                  2234567754 4566899999999999999999865 55555556665543221100          0111111


Q ss_pred             C------CCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          594 D------PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       594 d------~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      .      +........+...+.+++..++..||.+|.++.|++++
T Consensus       237 ~~~~~P~~~~~~lf~aas~d~ldLl~~m~~ynP~~Rita~qaL~~  281 (318)
T KOG0659|consen  237 KIQQFPKPPLNNLFPAASSDALDLLSKMLTYNPKKRITASQALKH  281 (318)
T ss_pred             HHhcCCCCccccccccccHHHHHHHHhhhccCchhcccHHHHhcc
Confidence            0      11111222344567899999999999999999988764

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=2.2e-36  Score=312.08  Aligned_cols=241  Identities=17%  Similarity=0.226  Sum_probs=190.1

Q ss_pred             hcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||+|.. .+++.+|+|.+.......  ......+.+|++++++++|+||+++.+++.+.+  ..++|+|
T Consensus         5 ~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~--~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~--~~~lv~e   80 (285)
T cd05631           5 YRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKK--RKGEAMALNEKRILEKVNSRFVVSLAYAYETKD--ALCLVLT   80 (285)
T ss_pred             EEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhh--hhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCC--eEEEEEE
Confidence            47899999999999996 578999999886543222  123456889999999999999999999998777  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|+|.+++.......+++..+..++.+++.||+|||+.+  |+||||||+|||+++++.+||+|||+++....    
T Consensus        81 ~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~~~~  158 (285)
T cd05631          81 IMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRER--IVYRDLKPENILLDDRGHIRISDLGLAVQIPEGETV  158 (285)
T ss_pred             ecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCC--EEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCCCee
Confidence            999999998876444456899999999999999999999998  99999999999999999999999999876421    


Q ss_pred             ----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCC-hHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          530 ----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGS-LEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       530 ----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                          ....+.+||......++.++|||||||++|||+||+.||...... ..+........          ....++...
T Consensus       159 ~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~----------~~~~~~~~~  228 (285)
T cd05631         159 RGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERVKREEVDRRVKE----------DQEEYSEKF  228 (285)
T ss_pred             cCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcchhHHHHHHHhhc----------ccccCCccC
Confidence                123456788888888999999999999999999999999543221 11111111111          001122233


Q ss_pred             HHHHHHHHHHhccCCCCCCCC-----HHHHHH
Q 006019          605 LETLGELIKSCVRADPEKRPT-----MRDIAA  631 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RPs-----~~ev~~  631 (664)
                      ...+.+++.+||+.||++||+     ++++++
T Consensus       229 s~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~  260 (285)
T cd05631         229 SEDAKSICRMLLTKNPKERLGCRGNGAAGVKQ  260 (285)
T ss_pred             CHHHHHHHHHHhhcCHHHhcCCCCCCHHHHhc
Confidence            456889999999999999997     677765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=2.6e-36  Score=316.40  Aligned_cols=243  Identities=17%  Similarity=0.291  Sum_probs=191.5

Q ss_pred             hcccccCCCeEEEEEEEC-CCc----EEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGV----EIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  449 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~----~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~  449 (664)
                      .+.||+|+||.||+|++. ++.    .||+|.+....    .....++|.+|+.+++.++||||++++|+|....   .+
T Consensus        12 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~~---~~   84 (316)
T cd05108          12 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT----SPKANKEILDEAYVMASVDNPHVCRLLGICLTST---VQ   84 (316)
T ss_pred             eeeeecCCCceEEEEEEecCCCccceeEEEEeccccC----CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCCC---ce
Confidence            478999999999999864 333    37888875322    1234568999999999999999999999998643   47


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                      +|+||+++|+|.++++.. ...+++...++++.+++.||+|||+.+  |+||||||+|||+++++.+||+|||+++....
T Consensus        85 ~v~e~~~~g~l~~~l~~~-~~~~~~~~~~~~~~qi~~~L~~LH~~~--iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~~  161 (316)
T cd05108          85 LITQLMPFGCLLDYVREH-KDNIGSQYLLNWCVQIAKGMNYLEERR--LVHRDLAARNVLVKTPQHVKITDFGLAKLLGA  161 (316)
T ss_pred             eeeecCCCCCHHHHHHhc-cccCCHHHHHHHHHHHHHHHHHHHhcC--eeccccchhheEecCCCcEEEccccccccccC
Confidence            999999999999998743 346889999999999999999999998  99999999999999999999999999986532


Q ss_pred             h-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 006019          530 A-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  597 (664)
Q Consensus       530 ~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  597 (664)
                      .           ...+.+||......++.++|||||||++|||+| |+.||..  ....++.. ........        
T Consensus       162 ~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~--~~~~~~~~-~~~~~~~~--------  230 (316)
T cd05108         162 DEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG--IPASEISS-ILEKGERL--------  230 (316)
T ss_pred             CCcceeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCC--CCHHHHHH-HHhCCCCC--------
Confidence            1           123556777777778999999999999999998 9999843  22223222 22211111        


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          598 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       598 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                       ..+..+...+.+++.+||+.+|++||++.+++..|..+...
T Consensus       231 -~~~~~~~~~~~~li~~cl~~~p~~Rps~~~l~~~l~~~~~~  271 (316)
T cd05108         231 -PQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARD  271 (316)
T ss_pred             -CCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHcC
Confidence             11122335688999999999999999999999999988653

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=100.00  E-value=7.4e-37  Score=329.10  Aligned_cols=254  Identities=20%  Similarity=0.306  Sum_probs=195.6

Q ss_pred             HHHHHHhhhhcccccCCCeEEEEEEEC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcccceEE
Q 006019          366 ELEAACEDFSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIG  438 (664)
Q Consensus       366 el~~~~~~~~~~iG~G~~G~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g  438 (664)
                      +..+....+.+.||+|+||.||+|+..      .+..||||++.....    ....+.|.+|++++++++ |||||+++|
T Consensus        33 ~~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~----~~~~~~~~~Ei~~l~~l~~HpnIv~l~~  108 (400)
T cd05105          33 EFPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTAR----SSEKQALMSELKIMTHLGPHLNIVNLLG  108 (400)
T ss_pred             eccccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCC----hHHHHHHHHHHHHHHhcCCCCCeeeEEE
Confidence            333333445689999999999999853      134699998854321    233467999999999996 999999999


Q ss_pred             EEecCCCceeEEEEEecCCCChhhhhcccC--------------------------------------------------
Q 006019          439 FCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--------------------------------------------------  468 (664)
Q Consensus       439 ~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~--------------------------------------------------  468 (664)
                      +|.+.+  ..++|||||++|+|.++++...                                                  
T Consensus       109 ~~~~~~--~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (400)
T cd05105         109 ACTKSG--PIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTT  186 (400)
T ss_pred             EEccCC--ceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhccccccccccccccc
Confidence            998776  6799999999999998875321                                                  


Q ss_pred             --------------------------------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcC
Q 006019          469 --------------------------------------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLN  504 (664)
Q Consensus       469 --------------------------------------------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk  504 (664)
                                                                  ...+++..+.+++.+++.||+|||+.+  ++|||||
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~--ivH~dik  264 (400)
T cd05105         187 QYVPMLEIKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASKN--CVHRDLA  264 (400)
T ss_pred             ccchhhhhhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCC--eeCCCCC
Confidence                                                        124788889999999999999999988  9999999


Q ss_pred             CCCeEecCCCceEecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCC
Q 006019          505 SSAVHLTEDYAAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDN  572 (664)
Q Consensus       505 ~~NILld~~~~~kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~  572 (664)
                      |+|||+++++.+||+|||+++.....           ...+.+||......++.++|||||||++|||++ |+.||....
T Consensus       265 p~Nill~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~  344 (400)
T cd05105         265 ARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMI  344 (400)
T ss_pred             hHhEEEeCCCEEEEEeCCcceeccccccccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccc
Confidence            99999999999999999998754211           123567887777778999999999999999998 999984321


Q ss_pred             CChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          573 GSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       573 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      .  .+.....+.....         ...+...+..+.+++.+||+.+|++||++.+|+++|+++.+
T Consensus       345 ~--~~~~~~~~~~~~~---------~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~l~~l~~  399 (400)
T cd05105         345 V--DSTFYNKIKSGYR---------MAKPDHATQEVYDIMVKCWNSEPEKRPSFLHLSDIVESLLP  399 (400)
T ss_pred             h--hHHHHHHHhcCCC---------CCCCccCCHHHHHHHHHHCccCHhHCcCHHHHHHHHHHHcC
Confidence            1  1111111111111         01122344678999999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=100.00  E-value=8.5e-37  Score=310.61  Aligned_cols=242  Identities=23%  Similarity=0.388  Sum_probs=197.5

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.+.||.|+||.||+|...++..+++|.+.....     ....++.+|+++++.++|+||+++++++...+  ..++|||
T Consensus        10 ~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~-----~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~lv~e   82 (261)
T cd05148          10 LERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDL-----LKQQDFQKEVQALKRLRHKHLISLFAVCSVGE--PVYIITE   82 (261)
T ss_pred             HhhhhccCCCccEEEeEecCCCcEEEEeccccch-----hhHHHHHHHHHHHhcCCCcchhheeeeEecCC--CeEEEEe
Confidence            4588999999999999988899999998864332     23467899999999999999999999998877  5699999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      |+++|+|.++++......+++..+.+++.+++.|++|||+.+  ++||||||+||++++++.+||+|||+++.....   
T Consensus        83 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~--i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~~~  160 (261)
T cd05148          83 LMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQN--SIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYL  160 (261)
T ss_pred             ecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeccccCcceEEEcCCceEEEccccchhhcCCcccc
Confidence            999999999998666677999999999999999999999988  999999999999999999999999998765321   


Q ss_pred             ------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          531 ------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       531 ------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                            ...+.+||......++.++||||||+++|||++ |+.||...  ...+......... .         ...+..
T Consensus       161 ~~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~--~~~~~~~~~~~~~-~---------~~~~~~  228 (261)
T cd05148         161 SSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGM--NNHEVYDQITAGY-R---------MPCPAK  228 (261)
T ss_pred             ccCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcC--CHHHHHHHHHhCC-c---------CCCCCC
Confidence                  123456777766778899999999999999999 89998432  2233333222211 0         011223


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAAILREI  636 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i  636 (664)
                      ++..+.+++.+||+.+|++||+++++.+.|+.+
T Consensus       229 ~~~~~~~~i~~~l~~~p~~Rpt~~~l~~~L~~~  261 (261)
T cd05148         229 CPQEIYKIMLECWAAEPEDRPSFKALREELDNI  261 (261)
T ss_pred             CCHHHHHHHHHHcCCCchhCcCHHHHHHHHhcC
Confidence            345688999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-36  Score=317.01  Aligned_cols=234  Identities=22%  Similarity=0.355  Sum_probs=193.7

Q ss_pred             cccccCCCeEEEEEE-ECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      ..||+|+.|.||.|+ ..++..||||++.......     .+-..+|+.+|+..+|+|||+++.-+...+  +.++||||
T Consensus       279 ~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~-----keLilnEi~Vm~~~~H~NiVnfl~Sylv~d--eLWVVMEy  351 (550)
T KOG0578|consen  279 KKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPK-----KELLLNEILVMRDLHHPNIVNFLDSYLVGD--ELWVVMEY  351 (550)
T ss_pred             hhhccccccceeeeeeccCCceEEEEEEEeccCCc-----hhhhHHHHHHHHhccchHHHHHHHHhcccc--eeEEEEee
Confidence            569999999999998 5578999999998765432     345789999999999999999998887776  78999999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh-----
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM-----  529 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~-----  529 (664)
                      |++|+|.|.+.   ...+++.+...|++++++||+|||..+  |+|||||+.|||++.++.+||+|||++..+..     
T Consensus       352 m~ggsLTDvVt---~~~~~E~qIA~Icre~l~aL~fLH~~g--IiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~KR  426 (550)
T KOG0578|consen  352 MEGGSLTDVVT---KTRMTEGQIAAICREILQGLKFLHARG--IIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQSKR  426 (550)
T ss_pred             cCCCchhhhhh---cccccHHHHHHHHHHHHHHHHHHHhcc--eeeeccccceeEeccCCcEEEeeeeeeeccccccCcc
Confidence            99999999884   455999999999999999999999999  99999999999999999999999999876632     


Q ss_pred             ----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 006019          530 ----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  605 (664)
Q Consensus       530 ----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  605 (664)
                          ++.++++||......|.+|.||||+|++++||+-|+.||..+.. +.. .+.+ .....      |.+ ..++...
T Consensus       427 ~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~P-lrA-lyLI-a~ng~------P~l-k~~~klS  496 (550)
T KOG0578|consen  427 STMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENP-LRA-LYLI-ATNGT------PKL-KNPEKLS  496 (550)
T ss_pred             ccccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccCCCh-HHH-HHHH-hhcCC------CCc-CCccccC
Confidence                24567789999888999999999999999999999999964332 111 1111 11111      111 1244555


Q ss_pred             HHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          606 ETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       606 ~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ..+.+++.+|++.|+++|+++.|+++
T Consensus       497 ~~~kdFL~~cL~~dv~~RasA~eLL~  522 (550)
T KOG0578|consen  497 PELKDFLDRCLVVDVEQRASAKELLE  522 (550)
T ss_pred             HHHHHHHHHHhhcchhcCCCHHHHhc
Confidence            78999999999999999999999986

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=100.00  E-value=1.7e-36  Score=309.53  Aligned_cols=243  Identities=21%  Similarity=0.386  Sum_probs=194.1

Q ss_pred             hhhcccccCCCeEEEEEEECC----CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          373 DFSNVIGSSPIGTVYKGTLSN----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~~----~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      ++.+.||+|+||.||+|++..    ...+|||.+....    ......+|.+|+.++++++||||+++++++.+.+  ..
T Consensus         7 ~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~----~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~   80 (266)
T cd05033           7 TIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGS----SDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSR--PV   80 (266)
T ss_pred             eeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCC----ChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCC--ce
Confidence            345889999999999999742    4578898875432    2334567999999999999999999999998776  56


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++||||+++|+|.+++... ...+++..+.+++.+++.|++|||+.+  |+||||||+||++++++.+||+|||+++...
T Consensus        81 ~iv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~Lh~~~--i~H~di~p~nili~~~~~~~l~dfg~~~~~~  157 (266)
T cd05033          81 MIITEYMENGSLDKFLREN-DGKFTVGQLVGMLRGIASGMKYLSEMN--YVHRDLAARNILVNSNLVCKVSDFGLSRRLE  157 (266)
T ss_pred             EEEEEcCCCCCHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCcceEEEcCCCCEEECccchhhccc
Confidence            9999999999999998643 347899999999999999999999988  9999999999999999999999999988763


Q ss_pred             hh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCC
Q 006019          529 MA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  596 (664)
Q Consensus       529 ~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  596 (664)
                      ..           ...+.+||......++.++||||||+++|||+| |+.||..  ....+........ ...       
T Consensus       158 ~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~--~~~~~~~~~~~~~-~~~-------  227 (266)
T cd05033         158 DSEATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWD--MSNQDVIKAVEDG-YRL-------  227 (266)
T ss_pred             ccccceeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCC--CCHHHHHHHHHcC-CCC-------
Confidence            11           123456777777778999999999999999998 9999842  2222222222211 100       


Q ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 006019          597 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  636 (664)
Q Consensus       597 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i  636 (664)
                        ..+..++..+.+++.+||+.+|++||++.+|++.|+++
T Consensus       228 --~~~~~~~~~l~~li~~cl~~~p~~Rp~~~ei~~~l~~~  265 (266)
T cd05033         228 --PPPMDCPSALYQLMLDCWQKDRNERPTFSQIVSTLDKM  265 (266)
T ss_pred             --CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence              11223345688999999999999999999999999976

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=3.6e-36  Score=309.87  Aligned_cols=243  Identities=26%  Similarity=0.430  Sum_probs=193.6

Q ss_pred             hhcccccCCCeEEEEEEECC-C-----cEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCce
Q 006019          374 FSNVIGSSPIGTVYKGTLSN-G-----VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  447 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~-~-----~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  447 (664)
                      +.+.||+|+||.||+|.... +     ..+++|.+....    ......+|.+|++++++++||||+++++++...+  .
T Consensus         9 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~----~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~--~   82 (283)
T cd05048           9 FLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENA----EPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQ--P   82 (283)
T ss_pred             hhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCC----CHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCC--c
Confidence            45789999999999998643 2     568888775332    1334567999999999999999999999998766  5


Q ss_pred             eEEEEEecCCCChhhhhcccCC--------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCC
Q 006019          448 RMMVFEYAPNGTLFEHIHIKES--------------EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED  513 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~~~--------------~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~  513 (664)
                      .+++|||+++|+|.+++.....              ..+++.....++.+++.||+|||+.+  ++||||||+||+++++
T Consensus        83 ~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~~--i~H~dlkp~Nil~~~~  160 (283)
T cd05048          83 TCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHH--FVHRDLAARNCLVGEG  160 (283)
T ss_pred             eEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCC--eeccccccceEEEcCC
Confidence            6999999999999999864311              45889999999999999999999998  9999999999999999


Q ss_pred             CceEecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHH
Q 006019          514 YAAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAAD  581 (664)
Q Consensus       514 ~~~kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~  581 (664)
                      +.+||+|||+++.....           ...+.+||+.....++.++|||||||++|||+| |..||...  ...+....
T Consensus       161 ~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~--~~~~~~~~  238 (283)
T cd05048         161 LTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGF--SNQEVIEM  238 (283)
T ss_pred             CcEEECCCcceeeccccccccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCC--CHHHHHHH
Confidence            99999999998754211           123567888777788999999999999999998 99998432  22233222


Q ss_pred             HhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 006019          582 YLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  636 (664)
Q Consensus       582 ~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i  636 (664)
                      ...+          .....+..++.++.+++.+||+.+|++||++.||++.|+++
T Consensus       239 i~~~----------~~~~~~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~l~~~  283 (283)
T cd05048         239 IRSR----------QLLPCPEDCPARVYALMIECWNEIPARRPRFKDIHTRLRSW  283 (283)
T ss_pred             HHcC----------CcCCCcccCCHHHHHHHHHHccCChhhCcCHHHHHHHHhcC
Confidence            2211          11122344557799999999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-36  Score=329.76  Aligned_cols=246  Identities=20%  Similarity=0.318  Sum_probs=200.8

Q ss_pred             hhcccccCCCeEEEEEEECCC-cEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcccceEE-EEe---cCC-Cc
Q 006019          374 FSNVIGSSPIGTVYKGTLSNG-VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIG-FCE---EEE-PF  446 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~-~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g-~~~---~~~-~~  446 (664)
                      +.+.|.+|||+.||.|....+ ..+|+|++-...     +...+...+||++|++++ |+|||.+++ ...   ..+ .+
T Consensus        41 V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~d-----e~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~  115 (738)
T KOG1989|consen   41 VEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVND-----EEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVW  115 (738)
T ss_pred             EEEEEccCCcEEEEEEEecCCCceeeeeeeecCC-----HHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCcee
Confidence            347899999999999997765 999999987652     345678999999999997 999999999 332   222 35


Q ss_pred             eeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhh
Q 006019          447 TRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  526 (664)
Q Consensus       447 ~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~  526 (664)
                      +.+|.||||++|+|-|++..+....|+....++|+.++++|+++||.+.|||||||||-+||||+.++..||||||.+..
T Consensus       116 EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~~pPiIHRDLKiENvLls~~g~~KLCDFGSatt  195 (738)
T KOG1989|consen  116 EVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYLKPPIIHRDLKIENVLLSADGNYKLCDFGSATT  195 (738)
T ss_pred             EEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhheEEcCCCCEEeCccccccc
Confidence            78999999999999999987666679999999999999999999999999999999999999999999999999998753


Q ss_pred             hh------------------hhhhhcccccc---cCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcC
Q 006019          527 IA------------------MAEMAATSKKL---SSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG  585 (664)
Q Consensus       527 ~~------------------~~~~~~~~pe~---~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~  585 (664)
                      ..                  .++..|.+||.   +.+..+++|+|||++||+||-|+....||+..+             
T Consensus       196 ~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg-------------  262 (738)
T KOG1989|consen  196 KILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESG-------------  262 (738)
T ss_pred             ccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCc-------------
Confidence            31                  12234456663   466778999999999999999999999994321             


Q ss_pred             CCCCccccCCCCC-CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCC
Q 006019          586 VQPLQQFVDPTLS-SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  640 (664)
Q Consensus       586 ~~~~~~~~d~~~~-~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~  640 (664)
                         ...|++.... .-.+.....+.+||..||+.+|++||++-+|+..+.++.+..
T Consensus       263 ---~laIlng~Y~~P~~p~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~~~~l~~~~  315 (738)
T KOG1989|consen  263 ---KLAILNGNYSFPPFPNYSDRLKDLIRTMLQPNPDERPNIYQVLEEIFELANKP  315 (738)
T ss_pred             ---ceeEEeccccCCCCccHHHHHHHHHHHHhccCcccCCCHHHHHHHHHHHhcCC
Confidence               1122222222 112456778999999999999999999999999999987653

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=100.00  E-value=3.8e-36  Score=317.60  Aligned_cols=249  Identities=20%  Similarity=0.315  Sum_probs=193.9

Q ss_pred             hhhhcccccCCCeEEEEEEEC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCC
Q 006019          372 EDFSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEE  444 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~  444 (664)
                      ..+.+.||+|+||.||+|+..      +++.||+|++.....    ....+.+.+|++++.++ +|+||++++++|...+
T Consensus         9 ~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~----~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~   84 (337)
T cd05054           9 LKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGAT----ASEYKALMTELKILIHIGHHLNVVNLLGACTKPG   84 (337)
T ss_pred             hhhhcccccCcCceEEeccccccccccccceeeeeeccCCCC----HHHHHHHHHHHHHHHhhccCcchhheeeeEecCC
Confidence            445688999999999999742      246899998853221    22345688999999999 8999999999987554


Q ss_pred             CceeEEEEEecCCCChhhhhcccC--------------------------------------------------------
Q 006019          445 PFTRMMVFEYAPNGTLFEHIHIKE--------------------------------------------------------  468 (664)
Q Consensus       445 ~~~~~lV~Ey~~~GsL~~~l~~~~--------------------------------------------------------  468 (664)
                      . ..++++||+++|+|.++++...                                                        
T Consensus        85 ~-~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (337)
T cd05054          85 G-PLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGD  163 (337)
T ss_pred             C-CEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhh
Confidence            2 5689999999999999885321                                                        


Q ss_pred             ---CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh-----------hhhc
Q 006019          469 ---SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-----------EMAA  534 (664)
Q Consensus       469 ---~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~-----------~~~~  534 (664)
                         ...++|..+.+++.+|+.||+|||+.+  |+||||||+|||+++++.+||+|||+++.+...           ...+
T Consensus       164 ~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~--ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y  241 (337)
T cd05054         164 ELYKEPLTLEDLISYSFQVARGMEFLASRK--CIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKW  241 (337)
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCccc
Confidence               126899999999999999999999988  999999999999999999999999999865211           1245


Q ss_pred             ccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHH
Q 006019          535 TSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIK  613 (664)
Q Consensus       535 ~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~  613 (664)
                      .+||+.....++.++|||||||++|||+| |+.||.....  .+.....+......         ..+.....++.+++.
T Consensus       242 ~aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~--~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~  310 (337)
T cd05054         242 MAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQI--DEEFCRRLKEGTRM---------RAPEYATPEIYSIML  310 (337)
T ss_pred             cCcHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCCc--cHHHHHHHhccCCC---------CCCccCCHHHHHHHH
Confidence            67888777889999999999999999998 9999843221  11111122111110         112223456899999


Q ss_pred             HhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          614 SCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       614 ~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      +||+.+|++||++.||++.|++++.
T Consensus       311 ~cl~~~p~~RPs~~ell~~l~~~~~  335 (337)
T cd05054         311 DCWHNNPEDRPTFSELVEILGDLLQ  335 (337)
T ss_pred             HHccCChhhCcCHHHHHHHHHHHHh
Confidence            9999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=4.2e-36  Score=315.66  Aligned_cols=235  Identities=17%  Similarity=0.218  Sum_probs=188.8

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      +.||+|+||.||+++.. +|+.+|+|++.......  ......+.+|++++++++||||+++++++...+  ..++||||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~--~~~lv~e~   76 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIA--KDEVAHTLTESRVLQNTRHPFLTALKYSFQTHD--RLCFVMEY   76 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh--hHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCC--EEEEEEeC
Confidence            36999999999999864 68899999987543211  223456889999999999999999999998877  77999999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh-----
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM-----  529 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~-----  529 (664)
                      +++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....     
T Consensus        77 ~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~L~~lH~~~--ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~  152 (323)
T cd05571          77 ANGGELFFHLSR--ERVFSEDRARFYGAEIVSALGYLHSCD--VVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGATM  152 (323)
T ss_pred             CCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHhCC--eEeCCCCHHHEEECCCCCEEEeeCCCCcccccCCCcc
Confidence            999999998863  356899999999999999999999999  99999999999999999999999999875321     


Q ss_pred             ----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 006019          530 ----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  605 (664)
Q Consensus       530 ----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  605 (664)
                          ....+.+||......++.++|||||||++|||+||+.||..  .+..........+..           .++....
T Consensus       153 ~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~--~~~~~~~~~~~~~~~-----------~~p~~~~  219 (323)
T cd05571         153 KTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYN--QDHEKLFELILMEEI-----------RFPRTLS  219 (323)
T ss_pred             cceecCccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCC--CCHHHHHHHHHcCCC-----------CCCCCCC
Confidence                23345678888778889999999999999999999999943  222232222222211           1122334


Q ss_pred             HHHHHHHHHhccCCCCCCC-----CHHHHHH
Q 006019          606 ETLGELIKSCVRADPEKRP-----TMRDIAA  631 (664)
Q Consensus       606 ~~l~~l~~~Cl~~~P~~RP-----s~~ev~~  631 (664)
                      .++.+++.+||+.||++||     ++.++++
T Consensus       220 ~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~  250 (323)
T cd05571         220 PEAKSLLAGLLKKDPKQRLGGGPEDAKEIME  250 (323)
T ss_pred             HHHHHHHHHHccCCHHHcCCCCCCCHHHHHc
Confidence            5688999999999999999     7888764

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=100.00  E-value=1.8e-36  Score=307.67  Aligned_cols=238  Identities=19%  Similarity=0.330  Sum_probs=190.6

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.+.||+|+||.||+|++.++..+|+|.+.....      ...+|.+|+.++++++||||+++++++.+.+  ..++|||
T Consensus         8 ~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~------~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~e   79 (256)
T cd05113           8 FLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM------SEDEFIEEAKVMMKLSHEKLVQLYGVCTKQR--PIYIVTE   79 (256)
T ss_pred             EeeEecCcccceEEEEEecCCCcEEEEEcCCCcc------cHHHHHHHHHHHhcCCCCCeeeEEEEEccCC--CcEEEEE
Confidence            4578999999999999988777899998753221      2357999999999999999999999998776  4699999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      |+++|+|.++++.. ...+++..+.+++.+++.||+|||+.+  ++|+||||+||++++++.+||+|||.++.....   
T Consensus        80 ~~~~~~l~~~i~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~  156 (256)
T cd05113          80 YMSNGCLLNYLREH-GKRFQPSQLLEMCKDVCEGMAYLESKQ--FIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYT  156 (256)
T ss_pred             cCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhCC--eeccccCcceEEEcCCCCEEECCCccceecCCCcee
Confidence            99999999998643 236899999999999999999999998  999999999999999999999999988754211   


Q ss_pred             -------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          531 -------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       531 -------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                             ...+.+||......++.++|||||||++|||+| |+.||...  ...+.......+...          ..+.
T Consensus       157 ~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~--~~~~~~~~~~~~~~~----------~~~~  224 (256)
T cd05113         157 SSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERF--NNSETVEKVSQGLRL----------YRPH  224 (256)
T ss_pred             ecCCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcC--CHHHHHHHHhcCCCC----------CCCC
Confidence                   123567787777778899999999999999999 99998422  222222222222110          0011


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 006019          603 EQLETLGELIKSCVRADPEKRPTMRDIAAILR  634 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~  634 (664)
                      .....+.+++.+||+.+|++||++.++++.|+
T Consensus       225 ~~~~~~~~li~~cl~~~p~~Rp~~~~ll~~~~  256 (256)
T cd05113         225 LASEKVYAIMYSCWHEKAEERPTFQQLLSSIE  256 (256)
T ss_pred             CCCHHHHHHHHHHcCCCcccCCCHHHHHHhhC
Confidence            12357899999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=1e-35  Score=302.25  Aligned_cols=238  Identities=22%  Similarity=0.328  Sum_probs=189.5

Q ss_pred             ccccCCCeEEEEEEEC---CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          377 VIGSSPIGTVYKGTLS---NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       377 ~iG~G~~G~Vy~g~~~---~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .||+|+||.||+|.++   ++..+|+|++.....   .....++|.+|+.++++++|+||++++|++...   ..++|||
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~---~~~lv~e   75 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNN---DPALKDELLREANVMQQLDNPYIVRMIGICEAE---SWMLVME   75 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCC---cHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCC---CcEEEEe
Confidence            5899999999999753   578899998764321   234567899999999999999999999998643   4589999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhhh--
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE--  531 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~~--  531 (664)
                      |+++|+|.+++..  ...+++..+.+++.+++.|++|||+.+  ++||||||+||++++++.+||+|||+++......  
T Consensus        76 ~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~al~~lH~~~--i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~  151 (257)
T cd05116          76 LAELGPLNKFLQK--NKHVTEKNITELVHQVSMGMKYLEETN--FVHRDLAARNVLLVTQHYAKISDFGLSKALGADENY  151 (257)
T ss_pred             cCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--EeecccchhhEEEcCCCeEEECCCccccccCCCCCe
Confidence            9999999999863  346899999999999999999999998  9999999999999999999999999987653211  


Q ss_pred             ----------hhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 006019          532 ----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  600 (664)
Q Consensus       532 ----------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  600 (664)
                                ..+.+||.......+.++|||||||++|||+| |+.||...  ...++......+ ..         ...
T Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~--~~~~~~~~i~~~-~~---------~~~  219 (257)
T cd05116         152 YKAKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGM--KGNEVTQMIESG-ER---------MEC  219 (257)
T ss_pred             eeecCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHCC-CC---------CCC
Confidence                      23456776666678889999999999999998 99999532  223333332221 11         011


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 006019          601 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  636 (664)
Q Consensus       601 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i  636 (664)
                      +...+.++.+++.+||+.||++||+|.+|++.|++.
T Consensus       220 ~~~~~~~l~~li~~~~~~~p~~Rp~~~~i~~~l~~~  255 (257)
T cd05116         220 PQRCPPEMYDLMKLCWTYGVDERPGFAVVELRLRNY  255 (257)
T ss_pred             CCCCCHHHHHHHHHHhccCchhCcCHHHHHHHHhcc
Confidence            223446788999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.2e-36  Score=314.13  Aligned_cols=233  Identities=18%  Similarity=0.226  Sum_probs=186.3

Q ss_pred             cccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEecC
Q 006019          378 IGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAP  456 (664)
Q Consensus       378 iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey~~  456 (664)
                      ||+|+||.||+|+.. ++..+|+|++.......  ......+.+|++++++++||||+++++++...+  ..++||||++
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~e~~~   76 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVS--RSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPE--KLYLVLAFIN   76 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHHhCCCCcEeceeeEEecCC--eEEEEEcCCC
Confidence            799999999999965 57899999986433211  233467889999999999999999999998776  7799999999


Q ss_pred             CCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh-------
Q 006019          457 NGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM-------  529 (664)
Q Consensus       457 ~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~-------  529 (664)
                      +|+|.+++..  ...+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....       
T Consensus        77 ~g~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~  152 (312)
T cd05585          77 GGELFHHLQR--EGRFDLSRARFYTAELLCALENLHKFN--VIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDDKTNT  152 (312)
T ss_pred             CCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCC--eEeCCCCHHHeEECCCCcEEEEECcccccCccCCCcccc
Confidence            9999999863  346899999999999999999999998  99999999999999999999999999875321       


Q ss_pred             --hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHH
Q 006019          530 --AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLET  607 (664)
Q Consensus       530 --~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  607 (664)
                        ....+.+||......++.++|||||||++|||+||+.||..  ....+..........           .++......
T Consensus       153 ~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~--~~~~~~~~~~~~~~~-----------~~~~~~~~~  219 (312)
T cd05585         153 FCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYD--ENVNEMYRKILQEPL-----------RFPDGFDRD  219 (312)
T ss_pred             ccCCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCC--CCHHHHHHHHHcCCC-----------CCCCcCCHH
Confidence              22345678888777889999999999999999999999943  334444444333211           112223356


Q ss_pred             HHHHHHHhccCCCCCCCCHHHHHH
Q 006019          608 LGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       608 l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      +.+++.+||+.||++||++..+.+
T Consensus       220 ~~~li~~~L~~dp~~R~~~~~~~e  243 (312)
T cd05585         220 AKDLLIGLLSRDPTRRLGYNGAQE  243 (312)
T ss_pred             HHHHHHHHcCCCHHHcCCCCCHHH
Confidence            889999999999999986543333

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=100.00  E-value=1.6e-35  Score=304.75  Aligned_cols=246  Identities=20%  Similarity=0.321  Sum_probs=189.2

Q ss_pred             hcccccCCCeEEEEEEEC-CCcE----EEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVE----IAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  449 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~----vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~  449 (664)
                      .+.||+|+||.||+|.+. ++..    +++|.+...    .......++..|+..+++++||||++++|++...   ..+
T Consensus        12 ~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~----~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~~---~~~   84 (279)
T cd05111          12 LKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDR----SGRQTFQEITDHMLAMGSLDHAYIVRLLGICPGA---SLQ   84 (279)
T ss_pred             ccccCccCCcceEEEEEcCCCCceeeEEEEeecccc----cchHHHHHHHHHHHHHhcCCCCCcceEEEEECCC---ccE
Confidence            478999999999999964 3443    555555321    1123346788899999999999999999998643   357


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                      +++||+++|+|.++++. ....++|..+..++.|++.||+|||+.+  ++||||||+|||+++++.+||+|||+++....
T Consensus        85 ~i~e~~~~gsL~~~l~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~~--iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~~  161 (279)
T cd05111          85 LVTQLSPLGSLLDHVRQ-HRDSLDPQRLLNWCVQIAKGMYYLEEHR--MVHRNLAARNILLKSDSIVQIADFGVADLLYP  161 (279)
T ss_pred             EEEEeCCCCcHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHHCC--EeccccCcceEEEcCCCcEEEcCCccceeccC
Confidence            99999999999999964 3456899999999999999999999988  99999999999999999999999999875422


Q ss_pred             h-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 006019          530 A-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  597 (664)
Q Consensus       530 ~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  597 (664)
                      .           ...+.+||......++.++|||||||++||++| |+.||....  .... ...+......   ..+  
T Consensus       162 ~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~--~~~~-~~~~~~~~~~---~~~--  233 (279)
T cd05111         162 DDKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMR--PHEV-PDLLEKGERL---AQP--  233 (279)
T ss_pred             CCcccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCC--HHHH-HHHHHCCCcC---CCC--
Confidence            1           123456777777778999999999999999998 999984322  1111 1222211111   111  


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCCC
Q 006019          598 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPD  642 (664)
Q Consensus       598 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~~  642 (664)
                          ..+...+.+++.+||+.+|++||++.|+++.|+.+....|.
T Consensus       234 ----~~~~~~~~~li~~c~~~~p~~Rps~~el~~~l~~~~~~~~~  274 (279)
T cd05111         234 ----QICTIDVYMVMVKCWMIDENVRPTFKELANEFTRMARDPPR  274 (279)
T ss_pred             ----CCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHhCCcc
Confidence                11234578899999999999999999999999998775543

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=100.00  E-value=1.2e-35  Score=301.73  Aligned_cols=238  Identities=19%  Similarity=0.314  Sum_probs=188.9

Q ss_pred             ccccCCCeEEEEEEEC---CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          377 VIGSSPIGTVYKGTLS---NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       377 ~iG~G~~G~Vy~g~~~---~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .||+|+||.||+|.+.   ++..||+|.+.....    ....++|.+|+.++++++|+||+++++++...   ..++|||
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~----~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~---~~~lv~e   74 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENE----KSVRDEMMREAEIMHQLDNPYIVRMIGVCEAE---ALMLVME   74 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccC----hHHHHHHHHHHHHHHhcCCCCeEEEEEEEcCC---CeEEEEE
Confidence            3899999999999864   355789998754321    23456799999999999999999999998543   4689999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      |+++|+|.+++.. ....+++..+.+++.+++.|++|||+++  ++||||||+||+++.++.+||+|||+++.....   
T Consensus        75 ~~~~~~L~~~l~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~  151 (257)
T cd05115          75 MASGGPLNKFLSG-KKDEITVSNVVELMHQVSMGMKYLEGKN--FVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSY  151 (257)
T ss_pred             eCCCCCHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHhcC--eeecccchheEEEcCCCcEEeccCCccccccCCccc
Confidence            9999999999863 2456899999999999999999999998  999999999999999999999999998754221   


Q ss_pred             ---------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 006019          531 ---------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  600 (664)
Q Consensus       531 ---------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  600 (664)
                               ...+.+||......++.++|||||||++||+++ |+.||..  ....++......+. .         ...
T Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~--~~~~~~~~~~~~~~-~---------~~~  219 (257)
T cd05115         152 YKARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKK--MKGPEVMSFIEQGK-R---------LDC  219 (257)
T ss_pred             eeccCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCc--CCHHHHHHHHHCCC-C---------CCC
Confidence                     123456776666678899999999999999997 9999942  23333333222221 1         112


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 006019          601 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  636 (664)
Q Consensus       601 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i  636 (664)
                      +..+..++.+++.+||+.+|++||++.+|.+.|+.+
T Consensus       220 ~~~~~~~l~~li~~c~~~~~~~Rp~~~~i~~~l~~~  255 (257)
T cd05115         220 PAECPPEMYALMKDCWIYKWEDRPNFAKVEERMRTY  255 (257)
T ss_pred             CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHhhh
Confidence            233446788999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-36  Score=285.22  Aligned_cols=249  Identities=21%  Similarity=0.322  Sum_probs=197.2

Q ss_pred             hhcccccCCCeEEEEEE-ECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCC---CceeE
Q 006019          374 FSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE---PFTRM  449 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~---~~~~~  449 (664)
                      +.+.+|+|||..||.++ ..++..+|+|++.....     +..+..++|++..++++|||+++++.++..+.   ..+.|
T Consensus        25 i~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~-----~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~y   99 (302)
T KOG2345|consen   25 IQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQ-----EDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEAY   99 (302)
T ss_pred             EeeeecCCCceeeeeecccCcccchhhheeeccch-----HHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeEE
Confidence            45789999999999998 67889999999976553     23567899999999999999999998875432   23589


Q ss_pred             EEEEecCCCChhhhhccc--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhh
Q 006019          450 MVFEYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~  527 (664)
                      |++.|...|+|.+.+...  ++..++..+.++|+.|+++||++||+..|+++||||||.|||+.+++.+++.|||.+...
T Consensus       100 ll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~~~~yAH~DiKP~NILls~~~~~vl~D~GS~~~a  179 (302)
T KOG2345|consen  100 LLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEKEPPYAHRDIKPANILLSDSGLPVLMDLGSATQA  179 (302)
T ss_pred             EEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhccCCcccccCCCcceeEecCCCceEEEeccCcccc
Confidence            999999999999988643  456799999999999999999999999999999999999999999999999999987755


Q ss_pred             hh------------------hhhhcccccccCC---CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCC
Q 006019          528 AM------------------AEMAATSKKLSSA---PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV  586 (664)
Q Consensus       528 ~~------------------~~~~~~~pe~~~~---~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~  586 (664)
                      ..                  -++.+.+||++.-   ...++++|||||||+||+|+.|..||+...          .++.
T Consensus       180 ~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~----------~~Gg  249 (302)
T KOG2345|consen  180 PIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIY----------QQGG  249 (302)
T ss_pred             ceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHh----------hcCC
Confidence            21                  1234457777643   346899999999999999999999994211          1111


Q ss_pred             CCCccccCCCCC-CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhh
Q 006019          587 QPLQQFVDPTLS-SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  637 (664)
Q Consensus       587 ~~~~~~~d~~~~-~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~  637 (664)
                      ...-.+..+.+. ......++.+.+++.+|++.||.+||+..+++..++++.
T Consensus       250 SlaLAv~n~q~s~P~~~~yse~l~~lik~mlqvdP~qRP~i~~ll~~~d~Li  301 (302)
T KOG2345|consen  250 SLALAVQNAQISIPNSSRYSEALHQLIKSMLQVDPNQRPTIPELLSKLDDLI  301 (302)
T ss_pred             eEEEeeeccccccCCCCCccHHHHHHHHHHhcCCcccCCCHHHHHHHHHhhc
Confidence            111111221211 111124567999999999999999999999999998764

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=100.00  E-value=4.2e-36  Score=307.46  Aligned_cols=246  Identities=20%  Similarity=0.334  Sum_probs=188.5

Q ss_pred             hhcccccCCCeEEEEEEECCCc---EEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCC----Cc
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGV---EIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE----PF  446 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~---~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~----~~  446 (664)
                      +.+.||+|+||.||+|.+.+..   .+|+|.+.....   .....+.|.+|++++++++|+||++++++|....    ..
T Consensus         3 i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   79 (272)
T cd05075           3 LGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAIC---TRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYP   79 (272)
T ss_pred             cccccCcccCceEEEeEEccCCCeeeEEEEecccCcC---CHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCC
Confidence            4578999999999999975432   588887764322   1234567999999999999999999999985432    11


Q ss_pred             eeEEEEEecCCCChhhhhccc----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccC
Q 006019          447 TRMMVFEYAPNGTLFEHIHIK----ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLS  522 (664)
Q Consensus       447 ~~~lV~Ey~~~GsL~~~l~~~----~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfG  522 (664)
                      ..++++||+++|+|.+++...    ....+++.....++.+++.||+|||+.+  |+||||||+|||+++++.+||+|||
T Consensus        80 ~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dlkp~Nil~~~~~~~kl~Dfg  157 (272)
T cd05075          80 SPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSKS--FIHRDLAARNCMLNENMNVCVADFG  157 (272)
T ss_pred             CcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHCC--eeccccchhheEEcCCCCEEECCCC
Confidence            358999999999999887321    2345899999999999999999999988  9999999999999999999999999


Q ss_pred             chhhhhhhh-----------hhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCc
Q 006019          523 FWNEIAMAE-----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQ  590 (664)
Q Consensus       523 la~~~~~~~-----------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~  590 (664)
                      +++......           ..+.+||......++.++||||||+++|||++ |+.||...  ...+.......+ ... 
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~--~~~~~~~~~~~~-~~~-  233 (272)
T cd05075         158 LSKKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGV--ENSEIYDYLRQG-NRL-  233 (272)
T ss_pred             cccccCcccceecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCC--CHHHHHHHHHcC-CCC-
Confidence            988653211           12345666666678899999999999999999 88898432  222222222221 111 


Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 006019          591 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  636 (664)
Q Consensus       591 ~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i  636 (664)
                              ..+...+..+.+++.+||+.+|++||++.++++.|+++
T Consensus       234 --------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~~~  271 (272)
T cd05075         234 --------KQPPDCLDGLYSLMSSCWLLNPKDRPSFETLRCELEKA  271 (272)
T ss_pred             --------CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence                    11122345688999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=7.1e-36  Score=307.86  Aligned_cols=255  Identities=21%  Similarity=0.310  Sum_probs=193.2

Q ss_pred             hhcccccCCCeEEEEEEE-----CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          374 FSNVIGSSPIGTVYKGTL-----SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-----~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      +.+.||+|+||+||++.+     .++..+|+|.+.....    ......|.+|++++++++||||+++++++...+....
T Consensus         8 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (283)
T cd05080           8 KIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECG----QQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGL   83 (283)
T ss_pred             eceecccCCCcEEEEeeEccccCCCCceEEEEEeccccC----hHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceE
Confidence            457899999999988653     3577899998864321    2245678999999999999999999999876543357


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++||||+++|+|.+++..   ..+++.++..++.+++.||+|||+.+  ++||||||+||++++++.+||+|||+++...
T Consensus        84 ~lv~e~~~~~~l~~~~~~---~~l~~~~~~~i~~~l~~~l~~lH~~~--i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~  158 (283)
T cd05080          84 QLIMEYVPLGSLRDYLPK---HKLNLAQLLLFAQQICEGMAYLHSQH--YIHRDLAARNVLLDNDRLVKIGDFGLAKAVP  158 (283)
T ss_pred             EEEecCCCCCCHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHCC--eeccccChheEEEcCCCcEEEeecccccccC
Confidence            899999999999999863   35999999999999999999999998  9999999999999999999999999987653


Q ss_pred             hhh------------hhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcC--CCCCccccC
Q 006019          529 MAE------------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG--VQPLQQFVD  594 (664)
Q Consensus       529 ~~~------------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~--~~~~~~~~d  594 (664)
                      ...            ..+.+||.......+.++||||||+++|||+||+.|+........+........  .....+..+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (283)
T cd05080         159 EGHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLIELLE  238 (283)
T ss_pred             CcchhhccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhcccccccchhhhhhhhh
Confidence            211            123467777667789999999999999999999999843221111111000000  000111111


Q ss_pred             CCC-CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhh
Q 006019          595 PTL-SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  637 (664)
Q Consensus       595 ~~~-~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~  637 (664)
                      ... ...+...+.++.+++.+||+.+|++||+++++++.|+++.
T Consensus       239 ~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~i~~~l~~~~  282 (283)
T cd05080         239 RGMRLPCPKNCPQEVYILMKNCWETEAKFRPTFRSLIPILKEMH  282 (283)
T ss_pred             cCCCCCCCCCCCHHHHHHHHHHhccChhhCCCHHHHHHHHHHhh
Confidence            111 1123344567999999999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=100.00  E-value=2.6e-35  Score=300.79  Aligned_cols=249  Identities=22%  Similarity=0.333  Sum_probs=198.4

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. ++..+|||.+......+  ......|.+|++++++++||||+++++++...+  ..++|+
T Consensus         6 i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~~v~   81 (267)
T cd08228           6 IEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMD--AKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDN--ELNIVL   81 (267)
T ss_pred             eeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCC--HHHHHHHHHHHHHHHhCCCcceeeeeeeEEECC--eEEEEE
Confidence            4578999999999999964 68999999876533222  344567999999999999999999999998776  679999


Q ss_pred             EecCCCChhhhhccc--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh
Q 006019          453 EYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~  530 (664)
                      ||+++|+|.+++...  ....++......++.+++.||+|||+.+  ++||||||+||+++.++.++|+|||+++.....
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~--i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~~  159 (267)
T cd08228          82 ELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRR--VMHRDIKPANVFITATGVVKLGDLGLGRFFSSK  159 (267)
T ss_pred             EecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhCC--eeCCCCCHHHEEEcCCCCEEECccccceeccch
Confidence            999999999887532  2345788999999999999999999998  999999999999999999999999988765321


Q ss_pred             ---------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 006019          531 ---------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  601 (664)
Q Consensus       531 ---------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  601 (664)
                               ...+.+||.......+.++||||||+++|||+||+.||..+.....++....... .      .+..  ..
T Consensus       160 ~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~-~------~~~~--~~  230 (267)
T cd08228         160 TTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLFSLCQKIEQC-D------YPPL--PT  230 (267)
T ss_pred             hHHHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCccccccHHHHHHHHhcC-C------CCCC--Ch
Confidence                     1234568877777788999999999999999999999865444444444332211 1      1111  12


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhh
Q 006019          602 EEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  637 (664)
Q Consensus       602 ~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~  637 (664)
                      ......+.+++.+||+.+|++||++.+|++.|+.+.
T Consensus       231 ~~~~~~~~~li~~cl~~~p~~Rp~~~~vl~~~~~~~  266 (267)
T cd08228         231 EHYSEKLRELVSMCIYPDPDQRPDIGYVHQIAKQMH  266 (267)
T ss_pred             hhcCHHHHHHHHHHCCCCcccCcCHHHHHHHHHHhc
Confidence            234467899999999999999999999999998763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=4.4e-36  Score=309.51  Aligned_cols=252  Identities=20%  Similarity=0.297  Sum_probs=191.1

Q ss_pred             hhcccccCCCeEEEEEEEC-----CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          374 FSNVIGSSPIGTVYKGTLS-----NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-----~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      +.+.||+|+||.||+|.+.     ++..|++|.+....     ....+.|.+|++++++++||||+++++++...+....
T Consensus         8 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~-----~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   82 (284)
T cd05081           8 FIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHST-----AEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL   82 (284)
T ss_pred             eeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCC-----HHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCce
Confidence            4478999999999999853     57889999875432     2345679999999999999999999999865443357


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++|+||+++|+|.+++.. ....++|..+..++.+++.||+|||+.+  ++||||||+||++++++.+||+|||+++...
T Consensus        83 ~lv~e~~~~~~L~~~l~~-~~~~l~~~~~~~~~~~l~~aL~~LH~~~--i~H~dlkp~nili~~~~~~~l~dfg~~~~~~  159 (284)
T cd05081          83 RLVMEYLPYGSLRDYLQK-HRERLDHRKLLLYASQICKGMEYLGSKR--YVHRDLATRNILVESENRVKIGDFGLTKVLP  159 (284)
T ss_pred             EEEEEecCCCCHHHHHHh-cCcCCCHHHHHHHHHHHHHHHHHHHHCC--ceeccCCHhhEEECCCCeEEECCCccccccc
Confidence            899999999999999863 2346899999999999999999999998  9999999999999999999999999988653


Q ss_pred             hhh------------hhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCC---C---Cc
Q 006019          529 MAE------------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ---P---LQ  590 (664)
Q Consensus       529 ~~~------------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~---~---~~  590 (664)
                      ...            ..+.+||......++.++|||||||++|||+||..|+....   ..+.........   .   +.
T Consensus       160 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  236 (284)
T cd05081         160 QDKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPP---AEFMRMMGNDKQGQMIVYHLI  236 (284)
T ss_pred             CCCcceeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcc---hhhhhhcccccccccchHHHH
Confidence            211            12456777766778899999999999999999877652111   111111000000   0   00


Q ss_pred             cccC-CCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 006019          591 QFVD-PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  636 (664)
Q Consensus       591 ~~~d-~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i  636 (664)
                      +... ......+...+.++.+++.+||+.+|++|||+.||++.|+.+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~~  283 (284)
T cd05081         237 ELLKNNGRLPAPPGCPAEIYAIMKECWNNDPSQRPSFSELALQVEAI  283 (284)
T ss_pred             HHHhcCCcCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHhc
Confidence            0000 001111233446789999999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=100.00  E-value=9.8e-36  Score=306.10  Aligned_cols=245  Identities=22%  Similarity=0.363  Sum_probs=195.0

Q ss_pred             HhhhhcccccCCCeEEEEEEECC------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCC
Q 006019          371 CEDFSNVIGSSPIGTVYKGTLSN------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE  444 (664)
Q Consensus       371 ~~~~~~~iG~G~~G~Vy~g~~~~------~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~  444 (664)
                      +..+.+.||+|+||.||+|...+      +..+|+|.+.....    ....+.|.+|++++++++|+||+++++++....
T Consensus         6 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   81 (280)
T cd05049           6 TIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETAS----NDARKDFEREAELLTNFQHENIVKFYGVCTEGD   81 (280)
T ss_pred             HhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCC----HHHHHHHHHHHHHHHhcCCCCchheeeEEecCC
Confidence            34456889999999999998643      47899998754321    234578999999999999999999999998876


Q ss_pred             CceeEEEEEecCCCChhhhhcccC------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecC
Q 006019          445 PFTRMMVFEYAPNGTLFEHIHIKE------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE  512 (664)
Q Consensus       445 ~~~~~lV~Ey~~~GsL~~~l~~~~------------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~  512 (664)
                        ..++||||+++|+|.++++...            ...+++.....++.+++.|++|||+.+  ++||||||+||+++.
T Consensus        82 --~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~--i~h~dlkp~nili~~  157 (280)
T cd05049          82 --PPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQH--FVHRDLATRNCLVGY  157 (280)
T ss_pred             --CeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhCC--eeccccccceEEEcC
Confidence              6799999999999999986431            245889999999999999999999998  999999999999999


Q ss_pred             CCceEecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHH
Q 006019          513 DYAAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAA  580 (664)
Q Consensus       513 ~~~~kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~  580 (664)
                      ++.+||+|||+++.....           ...+.+||......++.++|||||||++|||+| |+.||...  ...+...
T Consensus       158 ~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~--~~~~~~~  235 (280)
T cd05049         158 DLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGL--SNEEVIE  235 (280)
T ss_pred             CCeEEECCcccceecccCcceecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCC--CHHHHHH
Confidence            999999999998754211           123567888877888999999999999999999 99998432  2233333


Q ss_pred             HHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHh
Q 006019          581 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  635 (664)
Q Consensus       581 ~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~  635 (664)
                      ....+.          ....+...+..+.+++.+||+.+|++||++.||++.|++
T Consensus       236 ~~~~~~----------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~l~~  280 (280)
T cd05049         236 CITQGR----------LLQRPRTCPSEVYDIMLGCWKRDPQQRINIKDIHERLQK  280 (280)
T ss_pred             HHHcCC----------cCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhhC
Confidence            222211          011122234568999999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=100.00  E-value=6.2e-36  Score=306.14  Aligned_cols=247  Identities=23%  Similarity=0.387  Sum_probs=193.1

Q ss_pred             hhcccccCCCeEEEEEEECC----CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC----
Q 006019          374 FSNVIGSSPIGTVYKGTLSN----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----  445 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~----~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~----  445 (664)
                      +.+.||+|+||.||+|.+..    +..+|+|++.....   .......+.+|++.+++++|+||+++++++.....    
T Consensus         3 ~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   79 (273)
T cd05035           3 LGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIH---TYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKI   79 (273)
T ss_pred             cccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcC---CHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccC
Confidence            45789999999999998642    36799998864322   12345679999999999999999999999876442    


Q ss_pred             ceeEEEEEecCCCChhhhhccc----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEeccc
Q 006019          446 FTRMMVFEYAPNGTLFEHIHIK----ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDL  521 (664)
Q Consensus       446 ~~~~lV~Ey~~~GsL~~~l~~~----~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~Df  521 (664)
                      ...++++||+++|+|.+++...    ....+++.....++.+++.||+|||+.+  ++||||||+||++++++.+||+||
T Consensus        80 ~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~~--i~H~dlkp~Nil~~~~~~~kl~df  157 (273)
T cd05035          80 PKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRN--FIHRDLAARNCMLREDMTVCVADF  157 (273)
T ss_pred             cccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhCC--eeccccchheEEECCCCeEEECCc
Confidence            1368999999999999887532    2346899999999999999999999988  999999999999999999999999


Q ss_pred             Cchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCC
Q 006019          522 SFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPL  589 (664)
Q Consensus       522 Gla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~  589 (664)
                      |+++.....           ...+.+||.......+.++||||||+++|||++ |..||...  ...+.......+ .. 
T Consensus       158 g~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~--~~~~~~~~~~~~-~~-  233 (273)
T cd05035         158 GLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGV--ENHEIYDYLRHG-NR-  233 (273)
T ss_pred             cceeeccccccccccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHcC-CC-
Confidence            998765321           123446777666778899999999999999999 88988432  222333222221 11 


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhh
Q 006019          590 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  637 (664)
Q Consensus       590 ~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~  637 (664)
                              ...+.....++.+++.+||+.||++||++.|+++.|++++
T Consensus       234 --------~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~l~~~~  273 (273)
T cd05035         234 --------LKQPEDCLDELYDLMYSCWRADPKDRPTFTKLREVLENIL  273 (273)
T ss_pred             --------CCCCcCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhhC
Confidence                    1122334467899999999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=100.00  E-value=4.5e-36  Score=310.70  Aligned_cols=247  Identities=19%  Similarity=0.360  Sum_probs=195.2

Q ss_pred             hhcccccCCCeEEEEEEEC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCce
Q 006019          374 FSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  447 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  447 (664)
                      +.+.||+|+||.||+|+..      ++..+++|.+....     ....+.|.+|++++++++|+||+++++++...+  .
T Consensus         9 ~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~-----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~   81 (291)
T cd05094           9 LKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPT-----LAARKDFQREAELLTNLQHEHIVKFYGVCGDGD--P   81 (291)
T ss_pred             EeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCcc-----HHHHHHHHHHHHHHhcCCCCCcceEEEEEccCC--c
Confidence            3478999999999999842      34567787764322     233467999999999999999999999998776  6


Q ss_pred             eEEEEEecCCCChhhhhcccC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCC
Q 006019          448 RMMVFEYAPNGTLFEHIHIKE--------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED  513 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~  513 (664)
                      .++||||+++|+|.++++...              ...++|..+.+++.+++.|++|||+.+  ++||||||+||+++.+
T Consensus        82 ~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~--i~H~dlkp~Nil~~~~  159 (291)
T cd05094          82 LIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQH--FVHRDLATRNCLVGAN  159 (291)
T ss_pred             eEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhCC--eeecccCcceEEEccC
Confidence            799999999999999986421              245899999999999999999999998  9999999999999999


Q ss_pred             CceEecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHH
Q 006019          514 YAAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAAD  581 (664)
Q Consensus       514 ~~~kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~  581 (664)
                      +.+||+|||+++.....           ...+.+||......++.++|||||||++|||+| |+.||...  ...+....
T Consensus       160 ~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~--~~~~~~~~  237 (291)
T cd05094         160 LLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQL--SNTEVIEC  237 (291)
T ss_pred             CcEEECCCCcccccCCCceeecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHH
Confidence            99999999998754221           123567887777788999999999999999999 99998432  22222222


Q ss_pred             HhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCC
Q 006019          582 YLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP  641 (664)
Q Consensus       582 ~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~  641 (664)
                      ...+ . .        ...+...+..+.+++.+||+.+|++||++.+|+++|+++.+..|
T Consensus       238 ~~~~-~-~--------~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~v~~~l~~~~~~~~  287 (291)
T cd05094         238 ITQG-R-V--------LERPRVCPKEVYDIMLGCWQREPQQRLNIKEIYKILHALGKATP  287 (291)
T ss_pred             HhCC-C-C--------CCCCccCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHhhcC
Confidence            2111 1 1        11112234568899999999999999999999999999977544

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=100.00  E-value=3e-36  Score=306.57  Aligned_cols=246  Identities=22%  Similarity=0.379  Sum_probs=196.8

Q ss_pred             HHHHHhhhhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCc
Q 006019          367 LEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF  446 (664)
Q Consensus       367 l~~~~~~~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  446 (664)
                      +......+.++||+|+||.||+|...++..+|+|.+.....      ...+|.+|++++++++|+||+++++++.. +  
T Consensus         3 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~------~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~--   73 (260)
T cd05067           3 VPRETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSM------SPEAFLAEANLMKQLQHPRLVRLYAVVTQ-E--   73 (260)
T ss_pred             cchHHceeeeeeccCccceEEeeecCCCceEEEEEecCCCC------cHHHHHHHHHHHHhcCCcCeeeEEEEEcc-C--
Confidence            34445556689999999999999988899999998864322      23579999999999999999999998754 3  


Q ss_pred             eeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhh
Q 006019          447 TRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  526 (664)
Q Consensus       447 ~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~  526 (664)
                      ..++++||+++|+|.++++......+++.++..++.+++.||+|||+.+  ++||||||+||++++++.++|+|||+++.
T Consensus        74 ~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~--i~H~dl~p~ni~i~~~~~~~l~dfg~~~~  151 (260)
T cd05067          74 PIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKN--YIHRDLRAANILVSETLCCKIADFGLARL  151 (260)
T ss_pred             CcEEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCC--eecccccHHhEEEcCCCCEEEccCcceee
Confidence            4689999999999999987655667999999999999999999999988  99999999999999999999999999865


Q ss_pred             hhhh----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCC
Q 006019          527 IAMA----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  595 (664)
Q Consensus       527 ~~~~----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~  595 (664)
                      ....          ...+.+||......++.++|||||||++||++| |+.||...  ...+........ ...      
T Consensus       152 ~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~--~~~~~~~~~~~~-~~~------  222 (260)
T cd05067         152 IEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGM--TNPEVIQNLERG-YRM------  222 (260)
T ss_pred             cCCCCcccccCCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCC--ChHHHHHHHHcC-CCC------
Confidence            5311          123566777767778899999999999999999 99999432  222222222111 100      


Q ss_pred             CCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHh
Q 006019          596 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  635 (664)
Q Consensus       596 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~  635 (664)
                         ..+...+.++.+++.+||+.+|++||+++++...|+.
T Consensus       223 ---~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  259 (260)
T cd05067         223 ---PRPDNCPEELYELMRLCWKEKPEERPTFEYLRSVLED  259 (260)
T ss_pred             ---CCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHhhc
Confidence               1112233569999999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.1e-36  Score=311.00  Aligned_cols=238  Identities=18%  Similarity=0.241  Sum_probs=190.5

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. +++.+|+|++.......  ....+.+.+|++++++++||||+++++++.+.+  ..++||
T Consensus         5 ~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~lv~   80 (291)
T cd05612           5 RIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIR--LKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQR--FLYMLM   80 (291)
T ss_pred             eeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhh--hHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCC--eEEEEE
Confidence            3478999999999999975 68899999986533211  123457889999999999999999999988766  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++|+|.+++..  ...+++.....++.+++.||+|||+.+  ++||||||+|||+++++.+||+|||+++....   
T Consensus        81 e~~~~~~L~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~~~  156 (291)
T cd05612          81 EYVPGGELFSYLRN--SGRFSNSTGLFYASEIVCALEYLHSKE--IVYRDLKPENILLDKEGHIKLTDFGFAKKLRDRTW  156 (291)
T ss_pred             eCCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eeecCCCHHHeEECCCCCEEEEecCcchhccCCcc
Confidence            99999999999863  346889999999999999999999998  99999999999999999999999999886532   


Q ss_pred             ---hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHH
Q 006019          530 ---AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE  606 (664)
Q Consensus       530 ---~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  606 (664)
                         ....+.+||......++.++|||||||++|||+||+.||..  ....+...........           ++.....
T Consensus       157 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~--~~~~~~~~~i~~~~~~-----------~~~~~~~  223 (291)
T cd05612         157 TLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFD--DNPFGIYEKILAGKLE-----------FPRHLDL  223 (291)
T ss_pred             cccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHHhCCcC-----------CCccCCH
Confidence               22345678887777789999999999999999999999943  2333333333322111           1122235


Q ss_pred             HHHHHHHHhccCCCCCCCC-----HHHHHHH
Q 006019          607 TLGELIKSCVRADPEKRPT-----MRDIAAI  632 (664)
Q Consensus       607 ~l~~l~~~Cl~~~P~~RPs-----~~ev~~~  632 (664)
                      .+.+++.+||+.||.+||+     +.|+++.
T Consensus       224 ~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h  254 (291)
T cd05612         224 YAKDLIKKLLVVDRTRRLGNMKNGADDVKNH  254 (291)
T ss_pred             HHHHHHHHHcCCCHHHccCCccCCHHHHhcC
Confidence            6889999999999999995     7766643

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=100.00  E-value=4.3e-36  Score=305.45  Aligned_cols=241  Identities=23%  Similarity=0.383  Sum_probs=194.5

Q ss_pred             hhhhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          372 EDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      ..+.+.||+|+||.||+|...++..+|+|.+.....      ..++|.+|++++++++|+|++++++++.+ .  ..+++
T Consensus         8 ~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~------~~~~~~~E~~~l~~l~~~~i~~~~~~~~~-~--~~~lv   78 (260)
T cd05070           8 LQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTM------SPESFLEEAQIMKKLRHDKLVQLYAVVSE-E--PIYIV   78 (260)
T ss_pred             hhhhheeccccCceEEEEEecCCceeEEEEecCCCC------CHHHHHHHHHHHHhcCCCceEEEEeEECC-C--CcEEE
Confidence            345688999999999999988888899998864322      23579999999999999999999998854 3  45899


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh-
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  530 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~-  530 (664)
                      |||+++|+|.++++......+++.++..++.+++.||+|||+.+  ++||||||+||++++++.+||+|||+++..... 
T Consensus        79 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~--i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~  156 (260)
T cd05070          79 TEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMN--YIHRDLRSANILVGDGLVCKIADFGLARLIEDNE  156 (260)
T ss_pred             EEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCccceEEEeCCceEEeCCceeeeeccCcc
Confidence            99999999999997655567899999999999999999999988  999999999999999999999999998755321 


Q ss_pred             ---------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 006019          531 ---------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  600 (664)
Q Consensus       531 ---------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  600 (664)
                               ...+.+||......++.++||||||+++|||+| |+.||...  ...+........ ..         ...
T Consensus       157 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~--~~~~~~~~~~~~-~~---------~~~  224 (260)
T cd05070         157 YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGM--NNREVLEQVERG-YR---------MPC  224 (260)
T ss_pred             cccccCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHHcC-CC---------CCC
Confidence                     123567887777778999999999999999999 89998432  222322222211 10         011


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHh
Q 006019          601 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  635 (664)
Q Consensus       601 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~  635 (664)
                      +...+..+.+++.+||+.+|++|||+.++.+.|++
T Consensus       225 ~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  259 (260)
T cd05070         225 PQDCPISLHELMLQCWKKDPEERPTFEYLQSFLED  259 (260)
T ss_pred             CCcCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence            22334578999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=100.00  E-value=4.7e-36  Score=303.58  Aligned_cols=239  Identities=24%  Similarity=0.376  Sum_probs=190.0

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      +.||+|+||.||+|+.. +++.+|+|......    .......|.+|++++++++||||++++++|...+  ..++|+||
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~----~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~e~   74 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETL----PPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQ--PIYIVMEL   74 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccC----CHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCC--CeEEEEee
Confidence            36999999999999964 68889999875321    2344567999999999999999999999998776  56999999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh----
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA----  530 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~----  530 (664)
                      +++++|.++++. ....+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++.....    
T Consensus        75 ~~~~~L~~~~~~-~~~~~~~~~~~~~~~qi~~~L~~lH~~~--i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~  151 (252)
T cd05084          75 VQGGDFLTFLRT-EGPRLKVKELIQMVENAAAGMEYLESKH--CIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYAS  151 (252)
T ss_pred             ccCCcHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHhCC--ccccccchheEEEcCCCcEEECccccCcccccccccc
Confidence            999999999863 3346899999999999999999999998  999999999999999999999999998754311    


Q ss_pred             -------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          531 -------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       531 -------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                             ...+.+||......++.++|||||||++|||++ |..||...  ...+........ ..         ...+.
T Consensus       152 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~--~~~~~~~~~~~~-~~---------~~~~~  219 (252)
T cd05084         152 TGGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANL--SNQQTREAIEQG-VR---------LPCPE  219 (252)
T ss_pred             cCCCCCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccc--CHHHHHHHHHcC-CC---------CCCcc
Confidence                   123567887777778999999999999999998 88888422  111111111111 00         01122


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHh
Q 006019          603 EQLETLGELIKSCVRADPEKRPTMRDIAAILRE  635 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~  635 (664)
                      ..+..+.+++.+||+.+|++||++.++.++|++
T Consensus       220 ~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~~  252 (252)
T cd05084         220 LCPDAVYRLMERCWEYDPGQRPSFSTVHQELQS  252 (252)
T ss_pred             cCCHHHHHHHHHHcCCChhhCcCHHHHHHHHhC
Confidence            334578999999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=100.00  E-value=4e-36  Score=307.03  Aligned_cols=243  Identities=20%  Similarity=0.350  Sum_probs=193.3

Q ss_pred             hhcccccCCCeEEEEEEECC-C---cEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeE
Q 006019          374 FSNVIGSSPIGTVYKGTLSN-G---VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  449 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~-~---~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~  449 (664)
                      ..+.||+|+||.||+|+... +   ..+++|.+.....    ....++|.+|++++++++|+|++++.+++...+  ..+
T Consensus         9 ~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~   82 (268)
T cd05063           9 KQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYT----EKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFK--PAM   82 (268)
T ss_pred             EeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCC----HHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCC--CcE
Confidence            34889999999999999752 3   3688887754321    234567999999999999999999999998777  569


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                      +||||+++|+|.++++.. ...+++.++..++.+++.|++|||+.+  ++||||||+||++++++.+|++|||+++....
T Consensus        83 lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~l~~al~~lH~~~--i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~  159 (268)
T cd05063          83 IITEYMENGALDKYLRDH-DGEFSSYQLVGMLRGIAAGMKYLSDMN--YVHRDLAARNILVNSNLECKVSDFGLSRVLED  159 (268)
T ss_pred             EEEEcCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCC--eeccccchhhEEEcCCCcEEECCCccceeccc
Confidence            999999999999998643 356899999999999999999999998  99999999999999999999999999875532


Q ss_pred             hh------------hhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCC
Q 006019          530 AE------------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  596 (664)
Q Consensus       530 ~~------------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  596 (664)
                      ..            ..+.+||+.....++.++|||||||++||++| |+.||...  ...++....... ...       
T Consensus       160 ~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~--~~~~~~~~i~~~-~~~-------  229 (268)
T cd05063         160 DPEGTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDM--SNHEVMKAINDG-FRL-------  229 (268)
T ss_pred             ccccceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcC--CHHHHHHHHhcC-CCC-------
Confidence            11            12456777777778899999999999999998 99999432  223333332221 110       


Q ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhh
Q 006019          597 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  637 (664)
Q Consensus       597 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~  637 (664)
                        ....+.+..+.+++.+||+.+|++||++.+|++.|++++
T Consensus       230 --~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~i~~~l~~~~  268 (268)
T cd05063         230 --PAPMDCPSAVYQLMLQCWQQDRARRPRFVDIVNLLDKLL  268 (268)
T ss_pred             --CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhhC
Confidence              111233456899999999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=100.00  E-value=4.5e-36  Score=304.63  Aligned_cols=237  Identities=22%  Similarity=0.365  Sum_probs=190.2

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.+.||+|+||.||+|.++++..+|+|.+.....      ...+|.+|++++++++|+||+++++++...+  ..++|+|
T Consensus         8 ~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~------~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~lv~e   79 (256)
T cd05059           8 FLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAM------SEDDFIEEAKVMMKLSHPNLVQLYGVCTKQR--PIFIVTE   79 (256)
T ss_pred             hhhhhccCCCceEEEeEecCCccEEEEEeccCCC------CHHHHHHHHHHHHhCCCCCEEEEEEEEcCCC--ceEEEEe
Confidence            4578999999999999988777899998753221      2357889999999999999999999998776  5799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhhh--
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE--  531 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~~--  531 (664)
                      |+++++|.++++... ..+++..+..|+.+++.|++|||+.+  ++||||||+||++++++.+||+|||+++......  
T Consensus        80 ~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~--i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~~  156 (256)
T cd05059          80 YMANGCLLNYLRERK-GKLGTEWLLDMCSDVCEAMEYLESNG--FIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYT  156 (256)
T ss_pred             cCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHCC--cccccccHhhEEECCCCcEEECCcccceeccccccc
Confidence            999999999987433 36899999999999999999999998  9999999999999999999999999987543211  


Q ss_pred             --------hhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          532 --------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       532 --------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                              ..+.+||......++.++|||||||++||++| |+.||...  ...+.........       ..   ..+.
T Consensus       157 ~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~--~~~~~~~~~~~~~-------~~---~~~~  224 (256)
T cd05059         157 SSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERF--SNSEVVESVSAGY-------RL---YRPK  224 (256)
T ss_pred             ccCCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCC--CHHHHHHHHHcCC-------cC---CCCC
Confidence                    13556887777778899999999999999999 89998432  1222222221110       00   1112


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 006019          603 EQLETLGELIKSCVRADPEKRPTMRDIAAIL  633 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L  633 (664)
                      ..+.++.+++.+||+.+|++||+|.|+++.|
T Consensus       225 ~~~~~~~~li~~cl~~~p~~Rpt~~~~l~~l  255 (256)
T cd05059         225 LAPTEVYTIMYSCWHEKPEDRPAFKKLLSQL  255 (256)
T ss_pred             CCCHHHHHHHHHHhcCChhhCcCHHHHHHHh
Confidence            2345799999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=100.00  E-value=1.4e-35  Score=305.52  Aligned_cols=244  Identities=23%  Similarity=0.374  Sum_probs=193.5

Q ss_pred             hhhhcccccCCCeEEEEEEECC------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC
Q 006019          372 EDFSNVIGSSPIGTVYKGTLSN------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP  445 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~~~------~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  445 (664)
                      ..+.+.||+|+||.||+|...+      +..||+|++.....    ....+.|.+|+.+++.++||||+++++++...+ 
T Consensus         7 ~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~-   81 (283)
T cd05091           7 VRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAE----GPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQ-   81 (283)
T ss_pred             HHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCC----HHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCC-
Confidence            3455789999999999998632      47899998864321    234567999999999999999999999998877 


Q ss_pred             ceeEEEEEecCCCChhhhhccc--------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEec
Q 006019          446 FTRMMVFEYAPNGTLFEHIHIK--------------ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT  511 (664)
Q Consensus       446 ~~~~lV~Ey~~~GsL~~~l~~~--------------~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld  511 (664)
                       ..++++||+++++|.+++...              ....+++..+.+++.+++.||+|||+.+  ++||||||+||+++
T Consensus        82 -~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~g--i~H~dlkp~Nil~~  158 (283)
T cd05091          82 -PLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSHH--VVHKDLATRNVLVF  158 (283)
T ss_pred             -ceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHcC--ccccccchhheEec
Confidence             568999999999999987421              1235888999999999999999999998  99999999999999


Q ss_pred             CCCceEecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHH
Q 006019          512 EDYAAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWA  579 (664)
Q Consensus       512 ~~~~~kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~  579 (664)
                      +++.+||+|||+++.....           ...+.+||......++.++||||||+++|||+| |..||..  ....++.
T Consensus       159 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~--~~~~~~~  236 (283)
T cd05091         159 DKLNVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCG--YSNQDVI  236 (283)
T ss_pred             CCCceEecccccccccccchheeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCC--CCHHHHH
Confidence            9999999999998755321           123567787766778999999999999999998 8888842  2333444


Q ss_pred             HHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHh
Q 006019          580 ADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  635 (664)
Q Consensus       580 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~  635 (664)
                      .......          ....+..++..+.+++.+||+.+|++||++.+|++.|+.
T Consensus       237 ~~i~~~~----------~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~i~~~l~~  282 (283)
T cd05091         237 EMIRNRQ----------VLPCPDDCPAWVYTLMLECWNEFPSRRPRFKDIHSRLRT  282 (283)
T ss_pred             HHHHcCC----------cCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHhhC
Confidence            3333221          111233445678999999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=100.00  E-value=9.6e-36  Score=304.74  Aligned_cols=243  Identities=24%  Similarity=0.417  Sum_probs=189.4

Q ss_pred             cccccCCCeEEEEEEECC-Cc--EEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeEEE
Q 006019          376 NVIGSSPIGTVYKGTLSN-GV--EIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~-~~--~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.||+|+||.||+|+..+ +.  .+++|.+....    .....+.|.+|++++.++ +||||+++++++...+  ..++|
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~----~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~--~~~lv   74 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYA----SKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRG--YLYLA   74 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccC----CHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCC--CceEE
Confidence            369999999999999754 43  45777664221    123456799999999999 7999999999998876  56999


Q ss_pred             EEecCCCChhhhhcccC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceE
Q 006019          452 FEYAPNGTLFEHIHIKE--------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAK  517 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~k  517 (664)
                      |||+++|+|.++++...              ...+++.++.+++.+++.|++|||+.+  ++||||||+||++++++.+|
T Consensus        75 ~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~~--i~H~dikp~nili~~~~~~k  152 (270)
T cd05047          75 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ--FIHRDLAARNILVGENYVAK  152 (270)
T ss_pred             EEeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHCC--EeecccccceEEEcCCCeEE
Confidence            99999999999986431              235889999999999999999999988  99999999999999999999


Q ss_pred             ecccCchhhhhhh--------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCC
Q 006019          518 LSDLSFWNEIAMA--------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQP  588 (664)
Q Consensus       518 l~DfGla~~~~~~--------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~  588 (664)
                      ++|||+++.....        ...+.+||+.....++.++|||||||++|||+| |+.||..  ....+.......+ ..
T Consensus       153 l~dfgl~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~--~~~~~~~~~~~~~-~~  229 (270)
T cd05047         153 IADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCG--MTCAELYEKLPQG-YR  229 (270)
T ss_pred             ECCCCCccccchhhhccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccc--cCHHHHHHHHhCC-CC
Confidence            9999998533211        123567887777778999999999999999997 9999842  2223322222211 00


Q ss_pred             CccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          589 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       589 ~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      .         ..+......+.+++.+||+.+|.+||++.++++.|+++.+
T Consensus       230 ~---------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~~~~~  270 (270)
T cd05047         230 L---------EKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLE  270 (270)
T ss_pred             C---------CCCCcCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHhhC
Confidence            0         1112233568899999999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=1.1e-35  Score=312.34  Aligned_cols=235  Identities=17%  Similarity=0.220  Sum_probs=187.7

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      +.||+|+||.||+++.. +|..||+|.+.......  ......+.+|++++++++||||+++++++...+  ..++||||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~--~~~lv~E~   76 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIA--KDEVAHTVTESRVLQNTRHPFLTALKYAFQTHD--RLCFVMEY   76 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhh--hHHHHHHHHHHHHHHhCCCCCCcceeeEEecCC--EEEEEEeC
Confidence            36999999999999964 68999999987543221  223456788999999999999999999998776  67999999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh-----
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM-----  529 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~-----  529 (664)
                      +++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....     
T Consensus        77 ~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~~--ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~  152 (323)
T cd05595          77 ANGGELFFHLSR--ERVFTEERARFYGAEIVSALEYLHSRD--VVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATM  152 (323)
T ss_pred             CCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEecCCCHHHEEEcCCCCEEecccHHhccccCCCCcc
Confidence            999999988853  346899999999999999999999998  99999999999999999999999999875321     


Q ss_pred             ----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 006019          530 ----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  605 (664)
Q Consensus       530 ----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  605 (664)
                          ....+.+||......++.++|||||||++|||+||+.||...  +..+..........           ..+....
T Consensus       153 ~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~--~~~~~~~~~~~~~~-----------~~p~~~~  219 (323)
T cd05595         153 KTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ--DHERLFELILMEEI-----------RFPRTLS  219 (323)
T ss_pred             ccccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCC--CHHHHHHHHhcCCC-----------CCCCCCC
Confidence                123456788887778899999999999999999999999432  22222222222111           1122234


Q ss_pred             HHHHHHHHHhccCCCCCCC-----CHHHHHH
Q 006019          606 ETLGELIKSCVRADPEKRP-----TMRDIAA  631 (664)
Q Consensus       606 ~~l~~l~~~Cl~~~P~~RP-----s~~ev~~  631 (664)
                      .++.+++.+||+.||++||     ++.++++
T Consensus       220 ~~~~~li~~~L~~dP~~R~~~~~~~~~~~l~  250 (323)
T cd05595         220 PEAKSLLAGLLKKDPKQRLGGGPSDAKEVME  250 (323)
T ss_pred             HHHHHHHHHHccCCHHHhCCCCCCCHHHHHc
Confidence            5688999999999999998     7887765

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=100.00  E-value=3.7e-36  Score=309.98  Aligned_cols=243  Identities=25%  Similarity=0.406  Sum_probs=190.8

Q ss_pred             hhhcccccCCCeEEEEEEE-----CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCce
Q 006019          373 DFSNVIGSSPIGTVYKGTL-----SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  447 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~-----~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  447 (664)
                      .+.+.||+|+||.||+|.+     .++..+++|.+.....    .....+|.+|++++++++||||+++++++....  .
T Consensus         8 ~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~--~   81 (283)
T cd05090           8 RFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINN----PQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQ--P   81 (283)
T ss_pred             eeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCC----HHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCC--c
Confidence            3458899999999999985     2457889988863221    233467999999999999999999999998776  5


Q ss_pred             eEEEEEecCCCChhhhhcccC---------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecC
Q 006019          448 RMMVFEYAPNGTLFEHIHIKE---------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE  512 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~~---------------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~  512 (664)
                      .++||||+++|+|.+++....               ...+++.+...++.+++.||+|||+++  ++||||||+|||+++
T Consensus        82 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~--i~H~dlkp~nili~~  159 (283)
T cd05090          82 VCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHF--FVHKDLAARNILIGE  159 (283)
T ss_pred             eEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhcC--eehhccccceEEEcC
Confidence            699999999999999885221               235889999999999999999999998  999999999999999


Q ss_pred             CCceEecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHH
Q 006019          513 DYAAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAA  580 (664)
Q Consensus       513 ~~~~kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~  580 (664)
                      ++.+||+|||+++.....           ...+.+||+.....++.++|||||||++|||+| |..||....  ..+...
T Consensus       160 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~--~~~~~~  237 (283)
T cd05090         160 QLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFS--NQEVIE  237 (283)
T ss_pred             CCcEEeccccccccccCCcceecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCC--HHHHHH
Confidence            999999999998765221           123567887777778999999999999999999 999984321  122222


Q ss_pred             HHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHh
Q 006019          581 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  635 (664)
Q Consensus       581 ~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~  635 (664)
                      ..... ..         ...+..++..+.+++.+||+.+|++||++.+|.+.|+.
T Consensus       238 ~~~~~-~~---------~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~  282 (283)
T cd05090         238 MVRKR-QL---------LPCSEDCPPRMYSLMTECWQEGPSRRPRFKDIHTRLRS  282 (283)
T ss_pred             HHHcC-Cc---------CCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHhhc
Confidence            21111 11         11122334568899999999999999999999998874

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=8.8e-36  Score=314.02  Aligned_cols=238  Identities=16%  Similarity=0.259  Sum_probs=190.1

Q ss_pred             hhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      .+.+.||+|+||.||+|+.. +++.+|+|.+.......  ....+.+.+|++++++++||||+++++++.+.+  ..++|
T Consensus        21 ~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~lv   96 (329)
T PTZ00263         21 EMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILK--MKQVQHVAQEKSILMELSHPFIVNMMCSFQDEN--RVYFL   96 (329)
T ss_pred             EEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhh--hhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCC--EEEEE
Confidence            34588999999999999975 58899999986543211  123467899999999999999999999998877  77999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh--
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM--  529 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~--  529 (664)
                      |||+++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....  
T Consensus        97 ~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~~--ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~  172 (329)
T PTZ00263         97 LEFVVGGELFTHLRK--AGRFPNDVAKFYHAELVLAFEYLHSKD--IIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDRT  172 (329)
T ss_pred             EcCCCCChHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eeecCCCHHHEEECCCCCEEEeeccCceEcCCCc
Confidence            999999999999863  346888889999999999999999998  99999999999999999999999999876532  


Q ss_pred             ----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 006019          530 ----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  605 (664)
Q Consensus       530 ----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  605 (664)
                          ....+.+||......++.++|||||||++|||+||+.||..  ....+.......+...           ++....
T Consensus       173 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~--~~~~~~~~~i~~~~~~-----------~p~~~~  239 (329)
T PTZ00263        173 FTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFD--DTPFRIYEKILAGRLK-----------FPNWFD  239 (329)
T ss_pred             ceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCC--CCHHHHHHHHhcCCcC-----------CCCCCC
Confidence                22345678888777889999999999999999999999943  2223333333322111           111123


Q ss_pred             HHHHHHHHHhccCCCCCCCC-----HHHHHH
Q 006019          606 ETLGELIKSCVRADPEKRPT-----MRDIAA  631 (664)
Q Consensus       606 ~~l~~l~~~Cl~~~P~~RPs-----~~ev~~  631 (664)
                      ..+.+++.+||+.||++||+     +++++.
T Consensus       240 ~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~  270 (329)
T PTZ00263        240 GRARDLVKGLLQTDHTKRLGTLKGGVADVKN  270 (329)
T ss_pred             HHHHHHHHHHhhcCHHHcCCCCCCCHHHHhc
Confidence            46889999999999999997     566663

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-36  Score=310.11  Aligned_cols=252  Identities=23%  Similarity=0.305  Sum_probs=196.8

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      |.+.||+|+|.+||+|+- ..++++|||++.+.-.-.  ..-.+-...|-++|.++ .||.||+|+--+.+..  ..|.|
T Consensus        77 Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iik--e~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~--sLYFv  152 (604)
T KOG0592|consen   77 FGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIK--EKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEE--SLYFV  152 (604)
T ss_pred             hhheeccccceeEEEeeecCCCceeeHhhhhHHHHHh--hcccchhhHHHHHHHHhhCCCCeEEEEEEeeccc--ceEEE
Confidence            568899999999999994 568999999986432211  11123466788899999 8999999998888776  78999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhhh
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  531 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~~  531 (664)
                      +||+++|+|.++++  ..+.++......+|.+|..||+|||+++  ||||||||+|||||+||.+||+|||-|+.+....
T Consensus       153 Le~A~nGdll~~i~--K~Gsfde~caR~YAAeIldAleylH~~G--IIHRDlKPENILLd~dmhikITDFGsAK~l~~~~  228 (604)
T KOG0592|consen  153 LEYAPNGDLLDLIK--KYGSFDETCARFYAAEILDALEYLHSNG--IIHRDLKPENILLDKDGHIKITDFGSAKILSPSQ  228 (604)
T ss_pred             EEecCCCcHHHHHH--HhCcchHHHHHHHHHHHHHHHHHHHhcC--ceeccCChhheeEcCCCcEEEeeccccccCChhh
Confidence            99999999999996  4567999888999999999999999999  9999999999999999999999999999874321


Q ss_pred             ----------------------hhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCC
Q 006019          532 ----------------------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL  589 (664)
Q Consensus       532 ----------------------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~  589 (664)
                                            ..+.+||+.....++..+|+|+|||+||.|+.|+.||...+.  --.++.++.-..  
T Consensus       229 ~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~Ne--yliFqkI~~l~y--  304 (604)
T KOG0592|consen  229 KSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAANE--YLIFQKIQALDY--  304 (604)
T ss_pred             ccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccccH--HHHHHHHHHhcc--
Confidence                                  122357777778889999999999999999999999953332  122223322111  


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH-------HHhhhCCCCCCCCC
Q 006019          590 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI-------LREITGITPDGAIP  646 (664)
Q Consensus       590 ~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~-------L~~i~~~~~~~~~~  646 (664)
                               .+++..++.+.+|+.+.+..||.+|++..+|.+.       .+.+....|+...|
T Consensus       305 ---------~fp~~fp~~a~dLv~KLLv~dp~~Rlt~~qIk~HpFF~~Vdw~nlw~~~PP~l~p  359 (604)
T KOG0592|consen  305 ---------EFPEGFPEDARDLIKKLLVRDPSDRLTSQQIKAHPFFEGVDWENLWQQTPPKLQP  359 (604)
T ss_pred             ---------cCCCCCCHHHHHHHHHHHccCccccccHHHHhhCcccccCChhhhhhcCCCcccC
Confidence                     2333444678999999999999999999888763       34444555554443

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=100.00  E-value=6.6e-36  Score=308.98  Aligned_cols=246  Identities=20%  Similarity=0.355  Sum_probs=194.8

Q ss_pred             hhcccccCCCeEEEEEEEC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCce
Q 006019          374 FSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  447 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  447 (664)
                      +.+.||+|+||.||++...      ++..+|+|.+....     ......|.+|++++++++|+||+++++++...+  .
T Consensus         9 ~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~-----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~   81 (288)
T cd05093           9 LKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDAS-----DNARKDFHREAELLTNLQHEHIVKFYGVCVEGD--P   81 (288)
T ss_pred             eccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcC-----HHHHHHHHHHHHHHHhCCCCCcceEEEEEecCC--c
Confidence            4578999999999999842      34567888775322     234567999999999999999999999998776  6


Q ss_pred             eEEEEEecCCCChhhhhcccC-----------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCce
Q 006019          448 RMMVFEYAPNGTLFEHIHIKE-----------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAA  516 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~~-----------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~  516 (664)
                      .++||||+++|+|.++++...           ...+++.++.+++.+++.||+|||+.+  ++||||||+||++++++.+
T Consensus        82 ~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~~--i~H~dlkp~Nili~~~~~~  159 (288)
T cd05093          82 LIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQH--FVHRDLATRNCLVGENLLV  159 (288)
T ss_pred             cEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeecccCcceEEEccCCcE
Confidence            799999999999999986321           235899999999999999999999988  9999999999999999999


Q ss_pred             EecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhc
Q 006019          517 KLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLS  584 (664)
Q Consensus       517 kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~  584 (664)
                      ||+|||+++.....           ...+.+||......++.++|||||||++|||+| |+.||...  ...+.......
T Consensus       160 kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~--~~~~~~~~i~~  237 (288)
T cd05093         160 KIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQL--SNNEVIECITQ  237 (288)
T ss_pred             EeccCCccccccCCceeecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHc
Confidence            99999998754211           124567887777788999999999999999999 89998432  22222222222


Q ss_pred             CCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCC
Q 006019          585 GVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  640 (664)
Q Consensus       585 ~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~  640 (664)
                      +..  .        ..+...+..+.+++.+||+.+|.+||++.++++.|+++...+
T Consensus       238 ~~~--~--------~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~v~~~l~~~~~~~  283 (288)
T cd05093         238 GRV--L--------QRPRTCPKEVYDLMLGCWQREPHMRLNIKEIHSLLQNLAKAS  283 (288)
T ss_pred             CCc--C--------CCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHhc
Confidence            210  0        011122356899999999999999999999999999998654

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=100.00  E-value=3.6e-36  Score=309.04  Aligned_cols=243  Identities=21%  Similarity=0.336  Sum_probs=190.6

Q ss_pred             hhhcccccCCCeEEEEEEEC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCc
Q 006019          373 DFSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF  446 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  446 (664)
                      .+.+.||+|+||.||+|...      .+..+|+|++.....    .....+|.+|+.+++.++|+||+++++++.+..  
T Consensus         9 ~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~----~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~--   82 (277)
T cd05062           9 TMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAAS----MRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQ--   82 (277)
T ss_pred             eeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCC----HHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCC--
Confidence            34588999999999999863      246789988743211    223467999999999999999999999998776  


Q ss_pred             eeEEEEEecCCCChhhhhcccC--------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEe
Q 006019          447 TRMMVFEYAPNGTLFEHIHIKE--------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKL  518 (664)
Q Consensus       447 ~~~lV~Ey~~~GsL~~~l~~~~--------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl  518 (664)
                      ..++||||+++|+|.++++...        ...++|..+..++.+++.||+|||+.+  ++||||||+||++++++.+||
T Consensus        83 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~--~vH~dlkp~Nil~~~~~~~~l  160 (277)
T cd05062          83 PTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNANK--FVHRDLAARNCMVAEDFTVKI  160 (277)
T ss_pred             CeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCcchheEEEcCCCCEEE
Confidence            6799999999999999986421        234688999999999999999999988  999999999999999999999


Q ss_pred             cccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCC
Q 006019          519 SDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGV  586 (664)
Q Consensus       519 ~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~  586 (664)
                      +|||+++.....           ...+.+||......++.++|||||||++|||+| |+.||..  ....+........ 
T Consensus       161 ~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~--~~~~~~~~~~~~~-  237 (277)
T cd05062         161 GDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQG--MSNEQVLRFVMEG-  237 (277)
T ss_pred             CCCCCccccCCcceeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCC--CCHHHHHHHHHcC-
Confidence            999998754211           234567888777778999999999999999999 7888842  2223333222221 


Q ss_pred             CCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHh
Q 006019          587 QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  635 (664)
Q Consensus       587 ~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~  635 (664)
                      . .        ...+...+..+.+++.+||+.+|++||++.|+++.|++
T Consensus       238 ~-~--------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~  277 (277)
T cd05062         238 G-L--------LDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKE  277 (277)
T ss_pred             C-c--------CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHhhC
Confidence            1 1        11122334578999999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=100.00  E-value=1.6e-35  Score=318.51  Aligned_cols=253  Identities=19%  Similarity=0.314  Sum_probs=194.8

Q ss_pred             HHHHHHhhhhcccccCCCeEEEEEEEC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcccceEE
Q 006019          366 ELEAACEDFSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIG  438 (664)
Q Consensus       366 el~~~~~~~~~~iG~G~~G~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g  438 (664)
                      ++......+.+.||+|+||.||+|++.      .+..||+|++.....    ....+.+.+|+++|.++. |||||+++|
T Consensus        33 ~~~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~----~~~~~~~~~E~~~l~~l~~H~niv~~~~  108 (401)
T cd05107          33 EMPRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTAR----SSEKQALMSELKIMSHLGPHLNIVNLLG  108 (401)
T ss_pred             eecHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCC----hhHHHHHHHHHHHHHhcCCCCCeEEEEE
Confidence            344443445689999999999999864      246799999864321    223457899999999997 999999999


Q ss_pred             EEecCCCceeEEEEEecCCCChhhhhcccC--------------------------------------------------
Q 006019          439 FCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--------------------------------------------------  468 (664)
Q Consensus       439 ~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~--------------------------------------------------  468 (664)
                      +|...+  ..++|+||+++|+|.++++...                                                  
T Consensus       109 ~~~~~~--~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (401)
T cd05107         109 ACTKGG--PIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDES  186 (401)
T ss_pred             EEccCC--CcEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccc
Confidence            998876  5799999999999999986421                                                  


Q ss_pred             ----------------------------------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeC
Q 006019          469 ----------------------------------------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNY  502 (664)
Q Consensus       469 ----------------------------------------------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrD  502 (664)
                                                                    ...++|....+|+.+++.||+|||+.+  ++|||
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~--ivHrd  264 (401)
T cd05107         187 ADYVPMQDMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLASKN--CVHRD  264 (401)
T ss_pred             cCccchhcchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhcCC--cCccc
Confidence                                                          124678889999999999999999988  99999


Q ss_pred             cCCCCeEecCCCceEecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccC
Q 006019          503 LNSSAVHLTEDYAAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLV  570 (664)
Q Consensus       503 Lk~~NILld~~~~~kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~  570 (664)
                      |||+|||+++++.+||+|||+++.....           ...+.+||......++.++|||||||++|||++ |+.||..
T Consensus       265 lkp~NiLl~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~  344 (401)
T cd05107         265 LAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPE  344 (401)
T ss_pred             CCcceEEEeCCCEEEEEecCcceecccccccccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCC
Confidence            9999999999999999999998754211           123456777666778899999999999999998 8999843


Q ss_pred             CCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhh
Q 006019          571 DNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  637 (664)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~  637 (664)
                      ..  ..+.....+......         ..+.....++.+++.+||+.+|++||+|+||++.|++++
T Consensus       345 ~~--~~~~~~~~~~~~~~~---------~~p~~~~~~l~~li~~cl~~~P~~RPs~~ell~~L~~~~  400 (401)
T cd05107         345 LP--MNEQFYNAIKRGYRM---------AKPAHASDEIYEIMQKCWEEKFEIRPDFSQLVHLVGDLL  400 (401)
T ss_pred             CC--chHHHHHHHHcCCCC---------CCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHh
Confidence            21  222222222211110         112223457899999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=100.00  E-value=7e-36  Score=303.95  Aligned_cols=241  Identities=22%  Similarity=0.378  Sum_probs=192.4

Q ss_pred             hhhhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          372 EDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      ..+.+.||+|+||.||+|...++..+++|.+....      ...+.|.+|++++++++|+|++++++++.. +  ..++|
T Consensus         8 ~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~------~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~--~~~~v   78 (260)
T cd05069           8 LRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGT------MMPEAFLQEAQIMKKLRHDKLVPLYAVVSE-E--PIYIV   78 (260)
T ss_pred             eeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCC------ccHHHHHHHHHHHHhCCCCCeeeEEEEEcC-C--CcEEE
Confidence            34557899999999999998777789999875322      124678999999999999999999998854 3  45899


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh-
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  530 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~-  530 (664)
                      |||+++|+|.++++......++|..+..++.+++.||+|||+.+  ++||||||+||++++++.+||+|||+++..... 
T Consensus        79 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~--i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~  156 (260)
T cd05069          79 TEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMN--YIHRDLRAANILVGDNLVCKIADFGLARLIEDNE  156 (260)
T ss_pred             EEcCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhCC--EeecccCcceEEEcCCCeEEECCCccceEccCCc
Confidence            99999999999997655566899999999999999999999988  999999999999999999999999998754221 


Q ss_pred             ---------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 006019          531 ---------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  600 (664)
Q Consensus       531 ---------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  600 (664)
                               ...+.+||.......+.++|||||||++|||+| |+.||...  ...+........ ..         ...
T Consensus       157 ~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~--~~~~~~~~~~~~-~~---------~~~  224 (260)
T cd05069         157 YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGM--VNREVLEQVERG-YR---------MPC  224 (260)
T ss_pred             ccccCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHcC-CC---------CCC
Confidence                     123556777777778999999999999999999 89998432  222222222211 10         011


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHh
Q 006019          601 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  635 (664)
Q Consensus       601 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~  635 (664)
                      +...+..+.+++.+||+.+|++||++.+|.+.|++
T Consensus       225 ~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  259 (260)
T cd05069         225 PQGCPESLHELMKLCWKKDPDERPTFEYIQSFLED  259 (260)
T ss_pred             CcccCHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence            22344678999999999999999999999999985

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=2.4e-35  Score=310.98  Aligned_cols=246  Identities=15%  Similarity=0.235  Sum_probs=188.8

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||+++.. ++..+|+|.+.....    ......|.+|++++++++||||+++++++...+  ..++|||
T Consensus        10 ~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~----~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~e   83 (331)
T cd06649          10 ISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIK----PAIRNQIIRELQVLHECNSPYIVGFYGAFYSDG--EISICME   83 (331)
T ss_pred             EEeecCCCCEEEEEEEECCCCcEEEEEEeecccC----HHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECC--EEEEEee
Confidence            478999999999999975 578899998865321    234567999999999999999999999998877  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcC-CCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~-~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      |+++|+|.+++..  ...+++.....++.+++.||.|||+. +  |+||||||+|||++.++.+||+|||+++....   
T Consensus        84 ~~~~~~L~~~l~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~~--ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  159 (331)
T cd06649          84 HMDGGSLDQVLKE--AKRIPEEILGKVSIAVLRGLAYLREKHQ--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMA  159 (331)
T ss_pred             cCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHhhcCC--EEcCCCChhhEEEcCCCcEEEccCccccccccccc
Confidence            9999999999863  34688999999999999999999974 5  99999999999999999999999999875532   


Q ss_pred             ----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhc----CCCCCcc----------
Q 006019          530 ----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLS----GVQPLQQ----------  591 (664)
Q Consensus       530 ----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~----~~~~~~~----------  591 (664)
                          ....+.+||......++.++|||||||++|||+||+.||....  ..+.....-.    .......          
T Consensus       160 ~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (331)
T cd06649         160 NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPPD--AKELEAIFGRPVVDGEEGEPHSISPRPRPPG  237 (331)
T ss_pred             ccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHhcccccccccCCccccCccccccc
Confidence                2234567888877788999999999999999999999995322  1221111000    0000000          


Q ss_pred             ----------------------ccCCCCCCC-CHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          592 ----------------------FVDPTLSSF-DEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       592 ----------------------~~d~~~~~~-~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                                            +........ ......++.+++.+||+.||++||+++|+++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~~P~~Rpt~~ell~h  301 (331)
T cd06649         238 RPVSGHGMDSRPAMAIFELLDYIVNEPPPKLPNGVFTPDFQEFVNKCLIKNPAERADLKMLMNH  301 (331)
T ss_pred             ccccccccccccchhHHHHHHHHHhCCCcCCCCccccHHHHHHHHHHccCCcccCCCHHHHhcC
Confidence                                  000000000 01234568999999999999999999999875

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=1.6e-35  Score=311.77  Aligned_cols=236  Identities=18%  Similarity=0.210  Sum_probs=188.8

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      +.||+|+||.||+++.. ++..+|+|++.......  ......+.+|++++++++||||+++++++...+  ..++||||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~lv~Ey   76 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIA--KDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKD--RLCFVMEY   76 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCC--EEEEEEeC
Confidence            36999999999999964 68999999987543221  234467889999999999999999999998777  67999999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh-----
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM-----  529 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~-----  529 (664)
                      +++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....     
T Consensus        77 ~~~g~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~LH~~~--ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~~~~  152 (328)
T cd05593          77 VNGGELFFHLSR--ERVFSEDRTRFYGAEIVSALDYLHSGK--IVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAATM  152 (328)
T ss_pred             CCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCC--eEecccCHHHeEECCCCcEEEecCcCCccCCCccccc
Confidence            999999988853  356899999999999999999999998  99999999999999999999999999875321     


Q ss_pred             ----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 006019          530 ----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  605 (664)
Q Consensus       530 ----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  605 (664)
                          ....+.+||......++.++|||||||++|||+||+.||..  ....+..........           .++....
T Consensus       153 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~--~~~~~~~~~~~~~~~-----------~~p~~~~  219 (328)
T cd05593         153 KTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYN--QDHEKLFELILMEDI-----------KFPRTLS  219 (328)
T ss_pred             ccccCCcCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCC--CCHHHHHHHhccCCc-----------cCCCCCC
Confidence                12345678887777889999999999999999999999943  222333322222111           1122233


Q ss_pred             HHHHHHHHHhccCCCCCCC-----CHHHHHHH
Q 006019          606 ETLGELIKSCVRADPEKRP-----TMRDIAAI  632 (664)
Q Consensus       606 ~~l~~l~~~Cl~~~P~~RP-----s~~ev~~~  632 (664)
                      .++.+++.+||+.||++||     ++.++++.
T Consensus       220 ~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h  251 (328)
T cd05593         220 ADAKSLLSGLLIKDPNKRLGGGPDDAKEIMRH  251 (328)
T ss_pred             HHHHHHHHHHcCCCHHHcCCCCCCCHHHHhcC
Confidence            5688999999999999997     88888753

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=100.00  E-value=6.6e-36  Score=304.55  Aligned_cols=243  Identities=23%  Similarity=0.361  Sum_probs=194.0

Q ss_pred             hhhhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          372 EDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      ..+.+.||+|+||.||+|+..+...||+|++.....      ..++|.+|++++++++|+||+++++++.+ .  ..++|
T Consensus         8 ~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~------~~~~~~~E~~~l~~l~~~~i~~~~~~~~~-~--~~~lv   78 (262)
T cd05071           8 LRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM------SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-E--PIYIV   78 (262)
T ss_pred             eeEeeecCCCCCCcEEEEEecCCceEEEEecccCcc------CHHHHHHHHHHHHhCCCCCcceEEEEECC-C--CcEEE
Confidence            445688999999999999987777899998864221      23578999999999999999999998754 3  45899


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh-
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  530 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~-  530 (664)
                      |||+++|+|.++++......+++..+..++.+++.||+|||+.+  ++||||||+||++++++.+||+|||.++..... 
T Consensus        79 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~--i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~  156 (262)
T cd05071          79 TEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMN--YVHRDLRAANILVGENLVCKVADFGLARLIEDNE  156 (262)
T ss_pred             EEcCCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHCC--ccccccCcccEEEcCCCcEEeccCCceeeccccc
Confidence            99999999999997544556899999999999999999999988  999999999999999999999999998754321 


Q ss_pred             ---------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 006019          531 ---------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  600 (664)
Q Consensus       531 ---------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  600 (664)
                               ...+.+||......++.++||||||+++|||+| |+.||....  ..+........ ..         ...
T Consensus       157 ~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~--~~~~~~~~~~~-~~---------~~~  224 (262)
T cd05071         157 YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV--NREVLDQVERG-YR---------MPC  224 (262)
T ss_pred             cccccCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCC--hHHHHHHHhcC-CC---------CCC
Confidence                     123567787777778999999999999999999 888884322  22222222111 00         011


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhh
Q 006019          601 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  637 (664)
Q Consensus       601 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~  637 (664)
                      +.+.+..+.+++.+||+.+|++||++.++.+.|++..
T Consensus       225 ~~~~~~~l~~li~~~l~~~p~~Rp~~~~~~~~l~~~~  261 (262)
T cd05071         225 PPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYF  261 (262)
T ss_pred             ccccCHHHHHHHHHHccCCcccCCCHHHHHHHHHHhc
Confidence            2334567889999999999999999999999999764

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=100.00  E-value=3.5e-35  Score=299.79  Aligned_cols=249  Identities=24%  Similarity=0.351  Sum_probs=197.6

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|.. .++..++||.+......+  .....+|.+|+++++.++|+||+++++++.+.+  ..+++|
T Consensus         6 ~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~--~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~--~~~~v~   81 (267)
T cd08229           6 IEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMD--AKARADCIKEIDLLKQLNHPNVIKYYASFIEDN--ELNIVL   81 (267)
T ss_pred             hhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhh--HHHHHHHHHHHHHHHHccCCchhhhhheeEeCC--eEEEEE
Confidence            457899999999999995 578999999886533222  234568999999999999999999999998876  679999


Q ss_pred             EecCCCChhhhhcc--cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh
Q 006019          453 EYAPNGTLFEHIHI--KESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~--~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~  530 (664)
                      ||+++++|.+++..  .....+++....+++.+++.|++|||+.+  ++|+||||+||+++.++.++|+|||+++.....
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~--i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~  159 (267)
T cd08229          82 ELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRR--VMHRDIKPANVFITATGVVKLGDLGLGRFFSSK  159 (267)
T ss_pred             EecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEEcCCCCEEECcchhhhccccC
Confidence            99999999998863  23456899999999999999999999998  999999999999999999999999988765321


Q ss_pred             ---------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 006019          531 ---------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  601 (664)
Q Consensus       531 ---------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  601 (664)
                               ...+.+||.......+.++||||||+++|||++|+.||........++.......       ..+..  ..
T Consensus       160 ~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~-------~~~~~--~~  230 (267)
T cd08229         160 TTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQC-------DYPPL--PS  230 (267)
T ss_pred             CcccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccccchHHHHhhhhhcC-------CCCCC--Cc
Confidence                     1234567777677788999999999999999999999954433333332222111       11111  11


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhh
Q 006019          602 EEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  637 (664)
Q Consensus       602 ~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~  637 (664)
                      ......+.+++.+||+.+|++||||.+|+++++++.
T Consensus       231 ~~~~~~~~~li~~~l~~~p~~Rpt~~~i~~~~~~~~  266 (267)
T cd08229         231 DHYSEELRQLVNMCINPDPEKRPDITYVYDVAKRMH  266 (267)
T ss_pred             ccccHHHHHHHHHhcCCCcccCCCHHHHHHHHhhhc
Confidence            234567899999999999999999999999998763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=3.4e-35  Score=309.99  Aligned_cols=187  Identities=17%  Similarity=0.244  Sum_probs=160.3

Q ss_pred             hhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      ++.+.||+|+||.||++... ++..+|+|.+.....    ......+.+|++++++++|+||+++++++...+  ..++|
T Consensus         8 ~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~----~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv   81 (333)
T cd06650           8 EKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIK----PAIRNQIIRELQVLHECNSPYIVGFYGAFYSDG--EISIC   81 (333)
T ss_pred             heeccccCCCCEEEEEEEECCCCcEEEEEEeecccC----HHHHHHHHHHHHHHHHCCCCcccceeEEEEECC--EEEEE
Confidence            34578999999999999975 578888888765321    234567999999999999999999999999877  78999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcC-CCCeEEeCcCCCCeEecCCCceEecccCchhhhhh-
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM-  529 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~-~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~-  529 (664)
                      |||+++|+|.+++..  ...+++.....++.+++.|++|||+. +  ++||||||+|||+++++.+||+|||+++.... 
T Consensus        82 ~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~l~~~l~~lH~~~~--ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~  157 (333)
T cd06650          82 MEHMDGGSLDQVLKK--AGRIPEQILGKVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS  157 (333)
T ss_pred             EecCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHhcCC--EEecCCChhhEEEcCCCCEEEeeCCcchhhhhh
Confidence            999999999999863  34588899999999999999999974 6  99999999999999999999999999876532 


Q ss_pred             ------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCcc
Q 006019          530 ------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYL  569 (664)
Q Consensus       530 ------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~  569 (664)
                            ....+.+||......++.++|||||||++|||++|+.||.
T Consensus       158 ~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~  203 (333)
T cd06650         158 MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIP  203 (333)
T ss_pred             ccccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCC
Confidence                  1234567888877788999999999999999999999995

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=100.00  E-value=3.2e-35  Score=298.28  Aligned_cols=241  Identities=24%  Similarity=0.385  Sum_probs=193.7

Q ss_pred             hhhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      .+.+.||+|+||.||+|... |..+++|.....       ...+.|.+|+.++++++|+|++++++++...+. ..++|+
T Consensus         9 ~~~~~lg~g~~~~v~~~~~~-~~~~~~k~~~~~-------~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~-~~~lv~   79 (256)
T cd05082           9 KLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKND-------ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKG-GLYIVT   79 (256)
T ss_pred             eeeeeecccCCCeEEEEEEc-CCcEEEEEeCCC-------chHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCC-ceEEEE
Confidence            34578999999999999875 677899887422       124679999999999999999999998765432 568999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++|+|.++++......+++..+.+++.+++.||+|||+++  ++||||||+||++++++.+||+|||+++.....  
T Consensus        80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~  157 (256)
T cd05082          80 EYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANN--FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQD  157 (256)
T ss_pred             ECCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--EeccccchheEEEcCCCcEEecCCccceeccccCC
Confidence            9999999999997655556899999999999999999999998  999999999999999999999999998765321  


Q ss_pred             ----hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 006019          531 ----EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  605 (664)
Q Consensus       531 ----~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  605 (664)
                          ...+.+||+.....++.++||||||+++|||++ |+.||..  ....+.......+. .      +   ..+..++
T Consensus       158 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~--~~~~~~~~~~~~~~-~------~---~~~~~~~  225 (256)
T cd05082         158 TGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPR--IPLKDVVPRVEKGY-K------M---DAPDGCP  225 (256)
T ss_pred             CCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHhcCC-C------C---CCCCCCC
Confidence                224567888777788999999999999999998 9999842  33344333322211 0      0   1112334


Q ss_pred             HHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 006019          606 ETLGELIKSCVRADPEKRPTMRDIAAILREI  636 (664)
Q Consensus       606 ~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i  636 (664)
                      ..+.+++.+||+.+|++||++.++++.|+++
T Consensus       226 ~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~~  256 (256)
T cd05082         226 PVVYDVMKQCWHLDAATRPSFLQLREQLEHI  256 (256)
T ss_pred             HHHHHHHHHHhcCChhhCcCHHHHHHHHhcC
Confidence            5788999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-35  Score=310.45  Aligned_cols=246  Identities=19%  Similarity=0.290  Sum_probs=197.3

Q ss_pred             hhhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcccceEEEEecCCCceeEE
Q 006019          373 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMM  450 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~~~l  450 (664)
                      .+.+.||+|.||+||.|.. .++..||+|.+.............+.+.+|+.++++++ ||||++++.++....  ..++
T Consensus        20 ~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~--~~~i   97 (370)
T KOG0583|consen   20 ELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPT--KIYI   97 (370)
T ss_pred             eeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCC--eEEE
Confidence            3457899999999999985 46899999976654222111123456678999999999 999999999999877  6799


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCC-CceEecccCchhhhh-
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED-YAAKLSDLSFWNEIA-  528 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~-~~~kl~DfGla~~~~-  528 (664)
                      ||||+.+|+|++++..  ...+......+++.|++.|++|+|+.+  |+||||||+|||+|.+ +++||+|||++.... 
T Consensus        98 vmEy~~gGdL~~~i~~--~g~l~E~~ar~~F~Qlisav~y~H~~g--i~HRDLK~ENilld~~~~~~Kl~DFG~s~~~~~  173 (370)
T KOG0583|consen   98 VMEYCSGGDLFDYIVN--KGRLKEDEARKYFRQLISAVAYCHSRG--IVHRDLKPENILLDGNEGNLKLSDFGLSAISPG  173 (370)
T ss_pred             EEEecCCccHHHHHHH--cCCCChHHHHHHHHHHHHHHHHHHhCC--EeeCCCCHHHEEecCCCCCEEEeccccccccCC
Confidence            9999999999999974  567888999999999999999999999  9999999999999999 999999999998772 


Q ss_pred             h--------hhhhcccccccCCCC-C-CcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 006019          529 M--------AEMAATSKKLSSAPS-A-SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       529 ~--------~~~~~~~pe~~~~~~-~-s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                      .        +..++.+||...... + ..++||||+||+||.|++|+.||+.  .+.....+.+..+.-.+...++    
T Consensus       174 ~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d--~~~~~l~~ki~~~~~~~p~~~~----  247 (370)
T KOG0583|consen  174 EDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDD--SNVPNLYRKIRKGEFKIPSYLL----  247 (370)
T ss_pred             CCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCC--ccHHHHHHHHhcCCccCCCCcC----
Confidence            1        234667888887755 5 5889999999999999999999953  4444444444443222222221    


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhh
Q 006019          599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  637 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~  637 (664)
                            ..++.+++.+|+..+|.+|+++.+|+ .-.-+.
T Consensus       248 ------S~~~~~Li~~mL~~~P~~R~t~~~i~-~h~w~~  279 (370)
T KOG0583|consen  248 ------SPEARSLIEKMLVPDPSTRITLLEIL-EHPWFQ  279 (370)
T ss_pred             ------CHHHHHHHHHHcCCCcccCCCHHHHh-hChhhc
Confidence                  45688999999999999999999999 444443

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=100.00  E-value=1.3e-35  Score=299.77  Aligned_cols=238  Identities=23%  Similarity=0.402  Sum_probs=191.2

Q ss_pred             cccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEec
Q 006019          376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYA  455 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey~  455 (664)
                      ++||+|+||.||+|...++..+|+|.+....    .......|.+|++++++++||||+++++++...+  ..++||||+
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~----~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~e~~   74 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDL----PQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQ--PIYIVMELV   74 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcC----CHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCC--ccEEEEECC
Confidence            3699999999999998888999999875332    2334567999999999999999999999998776  569999999


Q ss_pred             CCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh-----
Q 006019          456 PNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-----  530 (664)
Q Consensus       456 ~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~-----  530 (664)
                      ++|+|.+++... ...+++..+.+++.+++.||.|+|+.+  ++||||||+||++++++.+||+|||+++.....     
T Consensus        75 ~~~~L~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~--~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~  151 (250)
T cd05085          75 PGGDFLSFLRKK-KDELKTKQLVKFALDAAAGMAYLESKN--CIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSS  151 (250)
T ss_pred             CCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhCC--eeecccChheEEEcCCCeEEECCCccceeccccccccC
Confidence            999999988643 346899999999999999999999988  999999999999999999999999998654211     


Q ss_pred             -----hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          531 -----EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       531 -----~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                           ...+.+||+.....++.++|||||||++||+++ |..||...  ............ ...         ..+...
T Consensus       152 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~--~~~~~~~~~~~~-~~~---------~~~~~~  219 (250)
T cd05085         152 GLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGM--TNQQAREQVEKG-YRM---------SCPQKC  219 (250)
T ss_pred             CCCCCcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCC--CHHHHHHHHHcC-CCC---------CCCCCC
Confidence                 123567887777788999999999999999999 99998432  222222222111 100         112223


Q ss_pred             HHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 006019          605 LETLGELIKSCVRADPEKRPTMRDIAAILR  634 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~  634 (664)
                      +..+.+++.+||+.+|++||++.|++++|.
T Consensus       220 ~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~  249 (250)
T cd05085         220 PDDVYKVMQRCWDYKPENRPKFSELQKELA  249 (250)
T ss_pred             CHHHHHHHHHHcccCcccCCCHHHHHHHhc
Confidence            457899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.7e-35  Score=312.54  Aligned_cols=246  Identities=15%  Similarity=0.184  Sum_probs=193.3

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. ++..||+|++.......  ....+.+.+|++++..++||||+++++++...+  ..++||
T Consensus         5 ~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~--~~~lv~   80 (333)
T cd05600           5 ILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFK--LNEVRHVLTERDILTTTKSEWLVKLLYAFQDDE--YLYLAM   80 (333)
T ss_pred             EEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhh--hhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCC--EEEEEE
Confidence            3478999999999999975 58899999987543221  223467889999999999999999999998877  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....   
T Consensus        81 e~~~g~~L~~~l~~--~~~l~~~~~~~~~~qi~~~l~~lH~~~--ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~~~~  156 (333)
T cd05600          81 EYVPGGDFRTLLNN--LGVLSEDHARFYMAEMFEAVDALHELG--YIHRDLKPENFLIDASGHIKLTDFGLSKGIVTYAN  156 (333)
T ss_pred             eCCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCCHHHEEECCCCCEEEEeCcCCcccccccC
Confidence            99999999999863  346889999999999999999999998  99999999999999999999999999876532   


Q ss_pred             ---hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHH
Q 006019          530 ---AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE  606 (664)
Q Consensus       530 ---~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  606 (664)
                         ....+.+||......++.++|||||||++|||+||+.||...  ...+............   ..+...........
T Consensus       157 ~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~--~~~~~~~~i~~~~~~~---~~~~~~~~~~~~s~  231 (333)
T cd05600         157 SVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGS--TPNETWENLKYWKETL---QRPVYDDPRFNLSD  231 (333)
T ss_pred             CcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCC--CHHHHHHHHHhccccc---cCCCCCccccccCH
Confidence               233456788887778899999999999999999999999432  2222222222111111   11111110112345


Q ss_pred             HHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          607 TLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       607 ~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      ++.+++.+||+.+|++||+++++++.
T Consensus       232 ~~~~li~~~l~~~~~rr~s~~~ll~h  257 (333)
T cd05600         232 EAWDLITKLINDPSRRFGSLEDIKNH  257 (333)
T ss_pred             HHHHHHHHHhhChhhhcCCHHHHHhC
Confidence            68899999999999999999999864

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=100.00  E-value=4.2e-35  Score=301.56  Aligned_cols=247  Identities=19%  Similarity=0.309  Sum_probs=196.1

Q ss_pred             hhhcccccCCCeEEEEEEECC-----CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCce
Q 006019          373 DFSNVIGSSPIGTVYKGTLSN-----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  447 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~~-----~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  447 (664)
                      .+.+.||+|+||.||+|...+     +..|++|.+...    ........+.+|+.++++++|+||+++++++...+. .
T Consensus         9 ~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~----~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~-~   83 (280)
T cd05043           9 TLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDH----ASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGE-P   83 (280)
T ss_pred             EEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCC----CCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCC-C
Confidence            355889999999999999765     678888887532    123445778999999999999999999999876432 5


Q ss_pred             eEEEEEecCCCChhhhhcccCC------CCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEeccc
Q 006019          448 RMMVFEYAPNGTLFEHIHIKES------EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDL  521 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~~~------~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~Df  521 (664)
                      .++++||+++|+|.+++.....      ..+++.++..++.+++.||+|||+.+  ++||||||+||++++++.+||+||
T Consensus        84 ~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~--i~H~di~p~nil~~~~~~~kl~d~  161 (280)
T cd05043          84 PFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKRG--VIHKDIAARNCVIDEELQVKITDN  161 (280)
T ss_pred             CEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHCC--EeecccCHhhEEEcCCCcEEECCC
Confidence            6899999999999999864321      46899999999999999999999988  999999999999999999999999


Q ss_pred             Cchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCC
Q 006019          522 SFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPL  589 (664)
Q Consensus       522 Gla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~  589 (664)
                      |+++.+...           ...+.+||......++.++||||||+++||++| |+.||...  ...++......+ ...
T Consensus       162 g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~--~~~~~~~~~~~~-~~~  238 (280)
T cd05043         162 ALSRDLFPMDYHCLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEI--DPFEMAAYLKDG-YRL  238 (280)
T ss_pred             CCcccccCCceEEeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcC--CHHHHHHHHHcC-CCC
Confidence            999865211           223567787776778999999999999999999 99999432  233333222221 111


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          590 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       590 ~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      .         .+..++..+.+++.+||+.+|++||++.++++.|+++.+
T Consensus       239 ~---------~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~~~~~  278 (280)
T cd05043         239 A---------QPINCPDELFAVMACCWALDPEERPSFSQLVQCLTDFHA  278 (280)
T ss_pred             C---------CCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence            1         111233568999999999999999999999999998865

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=100.00  E-value=6.9e-35  Score=297.40  Aligned_cols=248  Identities=23%  Similarity=0.330  Sum_probs=199.8

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|... +|..+++|.+......+  ....+.+.+|++++++++|+|++++++++...+  ..++||
T Consensus         6 ~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~--~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~--~~~lv~   81 (267)
T cd08224           6 IEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMD--AKARQDCLKEIDLLKQLDHPNVIKYLASFIENN--ELNIVL   81 (267)
T ss_pred             eeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccc--hhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCC--eEEEEE
Confidence            4578999999999999976 78999999886533222  233567999999999999999999999998876  679999


Q ss_pred             EecCCCChhhhhccc--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh
Q 006019          453 EYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~  530 (664)
                      ||+++|+|.+++...  ....+++.++..++.+++.|++|||+.+  ++||||||+||+++.++.++|+|||+++.....
T Consensus        82 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~--i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~~  159 (267)
T cd08224          82 ELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKR--IMHRDIKPANVFITATGVVKLGDLGLGRFFSSK  159 (267)
T ss_pred             ecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhCC--EecCCcChhhEEECCCCcEEEeccceeeeccCC
Confidence            999999999988532  3456899999999999999999999998  999999999999999999999999998754321


Q ss_pred             ---------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 006019          531 ---------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  601 (664)
Q Consensus       531 ---------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  601 (664)
                               ...+.+||......++.++|||||||++|||++|+.||.....+..++......+.          ....+
T Consensus       160 ~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~----------~~~~~  229 (267)
T cd08224         160 TTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEKCD----------YPPLP  229 (267)
T ss_pred             CcccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCCccHHHHHhhhhcCC----------CCCCC
Confidence                     22345688777777889999999999999999999999655444444433322211          11111


Q ss_pred             H-HHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhh
Q 006019          602 E-EQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  637 (664)
Q Consensus       602 ~-~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~  637 (664)
                      . .....+.+++.+||..+|++||++.+|+++|+++.
T Consensus       230 ~~~~~~~~~~~i~~cl~~~p~~Rp~~~~il~~~~~~~  266 (267)
T cd08224         230 ADHYSEELRDLVSRCINPDPEKRPDISYVLQVAKEMH  266 (267)
T ss_pred             hhhcCHHHHHHHHHHcCCCcccCCCHHHHHHHHHHhc
Confidence            1 34457889999999999999999999999999874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=2.5e-35  Score=313.76  Aligned_cols=235  Identities=20%  Similarity=0.292  Sum_probs=180.8

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||+|+.. +++.||||.+....    .......|.+|++++++++|+||+++++++.+.+  ..++|||
T Consensus        79 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~e  152 (353)
T PLN00034         79 VNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNH----EDTVRRQICREIEILRDVNHPNVVKCHDMFDHNG--EIQVLLE  152 (353)
T ss_pred             hhhccCCCCeEEEEEEECCCCCEEEEEEEecCC----cHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCC--eEEEEEe
Confidence            467999999999999965 68999999985432    1234567999999999999999999999998776  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|+|.+..      ...+.....++.+++.||+|||+.+  |+||||||+|||+++++.+||+|||+++....    
T Consensus       153 ~~~~~~L~~~~------~~~~~~~~~i~~qi~~aL~~LH~~~--ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~  224 (353)
T PLN00034        153 FMDGGSLEGTH------IADEQFLADVARQILSGIAYLHRRH--IVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDP  224 (353)
T ss_pred             cCCCCcccccc------cCCHHHHHHHHHHHHHHHHHHHHCC--EeecCCCHHHEEEcCCCCEEEcccccceeccccccc
Confidence            99999996543      3456778889999999999999998  99999999999999999999999999876532    


Q ss_pred             -----hhhhcccccccC-----CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 006019          530 -----AEMAATSKKLSS-----APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  599 (664)
Q Consensus       530 -----~~~~~~~pe~~~-----~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  599 (664)
                           ....+.+||...     ....+.++|||||||++|||++|+.||....  ..+|..........       ....
T Consensus       225 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~--~~~~~~~~~~~~~~-------~~~~  295 (353)
T PLN00034        225 CNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGR--QGDWASLMCAICMS-------QPPE  295 (353)
T ss_pred             ccccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCC--CccHHHHHHHHhcc-------CCCC
Confidence                 123455677542     2334568999999999999999999995222  12222111100000       0011


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          600 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       600 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      .+.....++.+++.+||+.||++||++.|+++.
T Consensus       296 ~~~~~~~~l~~li~~~l~~~P~~Rpt~~ell~h  328 (353)
T PLN00034        296 APATASREFRHFISCCLQREPAKRWSAMQLLQH  328 (353)
T ss_pred             CCCccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            122334568999999999999999999999875

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-36  Score=307.21  Aligned_cols=248  Identities=17%  Similarity=0.248  Sum_probs=190.8

Q ss_pred             hhcccccCCCeEEEEEE-ECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      ..++||.|.||.||+|+ ..+|..||||+++.+... |   .+..=.+|++.|+++. |||||++..++.+.+. ..++|
T Consensus        14 ~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s-~---ee~~nLREvksL~kln~hpniikL~Evi~d~~~-~L~fV   88 (538)
T KOG0661|consen   14 VIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYS-W---EECMNLREVKSLRKLNPHPNIIKLKEVIRDNDR-ILYFV   88 (538)
T ss_pred             HHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhcc-H---HHHHHHHHHHHHHhcCCCCcchhhHHHhhccCc-eEeee
Confidence            44789999999999999 457889999988654322 1   2233468999999998 9999999999988765 68999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhhh
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  531 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~~  531 (664)
                      ||||+. +|+++++.+ ...++......|+.||.+||+|+|.++  ++|||+||+|||+..+..+||+|||+||.+....
T Consensus        89 fE~Md~-NLYqLmK~R-~r~fse~~irnim~QilqGL~hiHk~G--fFHRDlKPENiLi~~~~~iKiaDFGLARev~Skp  164 (538)
T KOG0661|consen   89 FEFMDC-NLYQLMKDR-NRLFSESDIRNIMYQILQGLAHIHKHG--FFHRDLKPENILISGNDVIKIADFGLAREVRSKP  164 (538)
T ss_pred             HHhhhh-hHHHHHhhc-CCcCCHHHHHHHHHHHHHHHHHHHhcC--cccccCChhheEecccceeEecccccccccccCC
Confidence            999975 999999876 788999999999999999999999999  9999999999999999999999999999885332


Q ss_pred             --------hhccccccc-CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCC----------------
Q 006019          532 --------MAATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV----------------  586 (664)
Q Consensus       532 --------~~~~~pe~~-~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~----------------  586 (664)
                              ..|.+||.. ....|+.+.|||++|||++|+.+-+.-|.+.+ +..+ +..+..-.                
T Consensus       165 PYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~s-E~Dq-i~KIc~VLGtP~~~~~~eg~~La~  242 (538)
T KOG0661|consen  165 PYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGAS-EIDQ-IYKICEVLGTPDKDSWPEGYNLAS  242 (538)
T ss_pred             CcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCc-HHHH-HHHHHHHhCCCccccchhHHHHHH
Confidence                    233456543 45668999999999999999999887774322 2222 11111100                


Q ss_pred             ---CCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          587 ---QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       587 ---~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                         -.+.....-.+...-..+..+..+++.+|++.||++|||+.++++.
T Consensus       243 ~mnf~~P~~~~~~l~~L~p~~s~~~~~li~~ll~WDP~kRpTA~~al~~  291 (538)
T KOG0661|consen  243 AMNFRFPQVKPSPLKDLLPNASSEAASLIERLLAWDPDKRPTASQALQH  291 (538)
T ss_pred             HhccCCCcCCCCChHHhCcccCHHHHHHHHHHhcCCCccCccHHHHhcC
Confidence               0111111111122223366788999999999999999999988864

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=100.00  E-value=2.9e-35  Score=304.83  Aligned_cols=245  Identities=23%  Similarity=0.353  Sum_probs=194.0

Q ss_pred             hhhcccccCCCeEEEEEEECC------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCC
Q 006019          373 DFSNVIGSSPIGTVYKGTLSN------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEP  445 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~~------~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~  445 (664)
                      ++.+.||+|+||.||+|...+      ...+|+|.+....    ......++.+|++++.++ +|+||+++++++...+ 
T Consensus        15 ~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~----~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~-   89 (293)
T cd05053          15 TLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDA----TEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEG-   89 (293)
T ss_pred             EEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCC----CHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCCC-
Confidence            345789999999999998642      3578888875322    123346789999999999 8999999999998877 


Q ss_pred             ceeEEEEEecCCCChhhhhccc--------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEec
Q 006019          446 FTRMMVFEYAPNGTLFEHIHIK--------------ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT  511 (664)
Q Consensus       446 ~~~~lV~Ey~~~GsL~~~l~~~--------------~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld  511 (664)
                       ..+++|||+++|+|.++++..              ....+++..+++++.+++.||+|||+.+  |+||||||+||+++
T Consensus        90 -~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~--ivH~dlkp~Nil~~  166 (293)
T cd05053          90 -PLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKK--CIHRDLAARNVLVT  166 (293)
T ss_pred             -CeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHCC--ccccccceeeEEEc
Confidence             569999999999999998632              2456899999999999999999999988  99999999999999


Q ss_pred             CCCceEecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHH
Q 006019          512 EDYAAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWA  579 (664)
Q Consensus       512 ~~~~~kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~  579 (664)
                      +++.+||+|||+++.....           ...+.+||......++.++|||||||++|||++ |..||..  ....+..
T Consensus       167 ~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~--~~~~~~~  244 (293)
T cd05053         167 EDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPG--IPVEELF  244 (293)
T ss_pred             CCCeEEeCccccccccccccceeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCC--CCHHHHH
Confidence            9999999999998765321           123556887777778999999999999999998 9999842  2222322


Q ss_pred             HHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhh
Q 006019          580 ADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  637 (664)
Q Consensus       580 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~  637 (664)
                      ...... ..         ...+..+...+.+++.+||+.+|++|||+.|+++.|+++.
T Consensus       245 ~~~~~~-~~---------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~eil~~l~~~~  292 (293)
T cd05053         245 KLLKEG-YR---------MEKPQNCTQELYHLMRDCWHEVPSQRPTFKQLVEDLDRML  292 (293)
T ss_pred             HHHHcC-Cc---------CCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHHHHhh
Confidence            222211 11         0112233456889999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=100.00  E-value=2.9e-35  Score=311.95  Aligned_cols=251  Identities=19%  Similarity=0.310  Sum_probs=193.0

Q ss_pred             HhhhhcccccCCCeEEEEEEE------CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecC
Q 006019          371 CEDFSNVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEE  443 (664)
Q Consensus       371 ~~~~~~~iG~G~~G~Vy~g~~------~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~  443 (664)
                      ...+.+.||+|+||.||+|..      .+++.||||++.....    ......+.+|++++.++ +|+||++++++|...
T Consensus         8 ~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~----~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~   83 (343)
T cd05103           8 RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT----HSEHRALMSELKILIHIGHHLNVVNLLGACTKP   83 (343)
T ss_pred             HhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCC----hHHHHHHHHHHHHHHhccCCccHhhhcceeecC
Confidence            345668999999999999973      3467899999864321    22346788999999999 689999999998765


Q ss_pred             CCceeEEEEEecCCCChhhhhcccC-------------------------------------------------------
Q 006019          444 EPFTRMMVFEYAPNGTLFEHIHIKE-------------------------------------------------------  468 (664)
Q Consensus       444 ~~~~~~lV~Ey~~~GsL~~~l~~~~-------------------------------------------------------  468 (664)
                      +. ..++|+||+++|+|.++++...                                                       
T Consensus        84 ~~-~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (343)
T cd05103          84 GG-PLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVE  162 (343)
T ss_pred             CC-ceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccch
Confidence            42 4689999999999999886421                                                       


Q ss_pred             ----------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--------
Q 006019          469 ----------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--------  530 (664)
Q Consensus       469 ----------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--------  530 (664)
                                ...++|.++.+++.+++.||+|||+.+  |+||||||+|||+++++.+||+|||+++.....        
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~--i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~  240 (343)
T cd05103         163 EEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLASRK--CIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGD  240 (343)
T ss_pred             hhhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCC
Confidence                      124788899999999999999999998  999999999999999999999999998764211        


Q ss_pred             ---hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHH
Q 006019          531 ---EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE  606 (664)
Q Consensus       531 ---~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  606 (664)
                         ...+.+||......++.++||||||+++|||++ |..||...... .+... .+......         ..+.....
T Consensus       241 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~-~~~~~-~~~~~~~~---------~~~~~~~~  309 (343)
T cd05103         241 ARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID-EEFCR-RLKEGTRM---------RAPDYTTP  309 (343)
T ss_pred             CCCCcceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCcccc-HHHHH-HHhccCCC---------CCCCCCCH
Confidence               123557787767778999999999999999997 99998532211 11111 11111110         00111224


Q ss_pred             HHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          607 TLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       607 ~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                      ++.+++.+||+.+|++||++.||++.|+.+.+.
T Consensus       310 ~~~~~~~~cl~~~p~~Rps~~eil~~l~~~~~~  342 (343)
T cd05103         310 EMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA  342 (343)
T ss_pred             HHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence            688999999999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=100.00  E-value=3.7e-35  Score=304.82  Aligned_cols=247  Identities=23%  Similarity=0.401  Sum_probs=193.2

Q ss_pred             hhcccccCCCeEEEEEEECC-Cc--EEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeE
Q 006019          374 FSNVIGSSPIGTVYKGTLSN-GV--EIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRM  449 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~-~~--~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~  449 (664)
                      +.+.||+|+||.||+|...+ +.  .+++|.++...    .....+.|.+|++++.++ +||||+++++++...+  ..+
T Consensus         6 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~----~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~--~~~   79 (297)
T cd05089           6 FEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFA----SENDHRDFAGELEVLCKLGHHPNIINLLGACENRG--YLY   79 (297)
T ss_pred             eeeeecCCCcceEEEEEecCCCCcceeEEEEccccC----CHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCC--cce
Confidence            45789999999999998754 33  46777665321    123456799999999999 7999999999998766  579


Q ss_pred             EEEEecCCCChhhhhcccC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCc
Q 006019          450 MVFEYAPNGTLFEHIHIKE--------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA  515 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~  515 (664)
                      +|+||+++|+|.++++...              ...+++..+.+|+.+++.|++|||+.+  ++||||||+|||+++++.
T Consensus        80 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~--ivH~dlkp~Nill~~~~~  157 (297)
T cd05089          80 IAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEKQ--FIHRDLAARNVLVGENLA  157 (297)
T ss_pred             EEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCcCCcceEEECCCCe
Confidence            9999999999999986421              135889999999999999999999988  999999999999999999


Q ss_pred             eEecccCchhhhhh--------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCC
Q 006019          516 AKLSDLSFWNEIAM--------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGV  586 (664)
Q Consensus       516 ~kl~DfGla~~~~~--------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~  586 (664)
                      +||+|||++.....        ....+.+||......++.++|||||||++|||+| |+.||..  ....+.......+.
T Consensus       158 ~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~--~~~~~~~~~~~~~~  235 (297)
T cd05089         158 SKIADFGLSRGEEVYVKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCG--MTCAELYEKLPQGY  235 (297)
T ss_pred             EEECCcCCCccccceeccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCC--CCHHHHHHHHhcCC
Confidence            99999999864321        1123567887777778999999999999999998 9999943  23333333222211


Q ss_pred             CCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCC
Q 006019          587 QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  640 (664)
Q Consensus       587 ~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~  640 (664)
                      .          ...+...+..+.+++.+||+.+|.+||++.++++.|+++....
T Consensus       236 ~----------~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~~~~~  279 (297)
T cd05089         236 R----------MEKPRNCDDEVYELMRQCWRDRPYERPPFAQISVQLSRMLEAR  279 (297)
T ss_pred             C----------CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhh
Confidence            0          0112223456889999999999999999999999999998654

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=100.00  E-value=6.1e-35  Score=295.86  Aligned_cols=240  Identities=20%  Similarity=0.306  Sum_probs=194.2

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|... ++..+++|.+......   .....++.+|++++++++||||+++++++.+.+  ..++||
T Consensus         4 ~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   78 (256)
T cd08529           4 ILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMN---RREREEAIDEARVLAKLDSSYIIRYYESFLDKG--KLNIVM   78 (256)
T ss_pred             EeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCC---HHHHHHHHHHHHHHHhcCCCCeehheeeeccCC--EEEEEE
Confidence            4478999999999999965 6889999988654322   344578999999999999999999999998876  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++++|.++++......+++..+.+++.+++.||.|||+.+  ++||||||+||++++++.+||+|||+++.....  
T Consensus        79 e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~--i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~~  156 (256)
T cd08529          79 EYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKK--ILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTN  156 (256)
T ss_pred             EeCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCcceEEEeCCCCEEEcccccceeccCccc
Confidence            9999999999998655667999999999999999999999988  999999999999999999999999988765322  


Q ss_pred             -------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          531 -------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       531 -------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                             ...+.+||+......+.++|||||||++|||+||+.||....  ..+.......+.          ....+..
T Consensus       157 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~--~~~~~~~~~~~~----------~~~~~~~  224 (256)
T cd08529         157 FANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANN--QGALILKIIRGV----------FPPVSQM  224 (256)
T ss_pred             hhhccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHcCC----------CCCCccc
Confidence                   123457888777778899999999999999999999995332  222222222211          1111223


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      ....+.+++.+||+.+|++||+|.++++.
T Consensus       225 ~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~  253 (256)
T cd08529         225 YSQQLAQLIDQCLTKDYRQRPDTFQLLRN  253 (256)
T ss_pred             cCHHHHHHHHHHccCCcccCcCHHHHhhC
Confidence            34568999999999999999999998763

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=100.00  E-value=3.3e-35  Score=306.69  Aligned_cols=254  Identities=22%  Similarity=0.334  Sum_probs=198.2

Q ss_pred             HHHHHHhhhhcccccCCCeEEEEEEEC--------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccce
Q 006019          366 ELEAACEDFSNVIGSSPIGTVYKGTLS--------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNL  436 (664)
Q Consensus       366 el~~~~~~~~~~iG~G~~G~Vy~g~~~--------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l  436 (664)
                      ++......+.+.||+|+||.||+++..        +...+|+|.+.....    .....++..|+++++++ +|+||+++
T Consensus        14 ~~~~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~----~~~~~~~~~e~~~l~~l~~h~~i~~~   89 (307)
T cd05098          14 EVPRDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDAT----EKDLSDLISEMEMMKMIGKHKNIINL   89 (307)
T ss_pred             eeehHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCC----hHHHHHHHHHHHHHHHhcCCCCEeeE
Confidence            344444456689999999999999853        234688888764321    22345788999999999 79999999


Q ss_pred             EEEEecCCCceeEEEEEecCCCChhhhhcccC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeC
Q 006019          437 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNY  502 (664)
Q Consensus       437 ~g~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrD  502 (664)
                      +++|...+  ..++||||+++|+|.++++...              ...++|.++++++.+++.||+|||+.+  ++|||
T Consensus        90 ~~~~~~~~--~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~g--i~H~d  165 (307)
T cd05098          90 LGACTQDG--PLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKK--CIHRD  165 (307)
T ss_pred             EEEEecCC--ceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCC--ccccc
Confidence            99998877  6799999999999999986432              235899999999999999999999988  99999


Q ss_pred             cCCCCeEecCCCceEecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccC
Q 006019          503 LNSSAVHLTEDYAAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLV  570 (664)
Q Consensus       503 Lk~~NILld~~~~~kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~  570 (664)
                      |||+||+++.++.+||+|||+++.....           ...+.+||......++.++|||||||++|||++ |+.||..
T Consensus       166 lkp~Nill~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~  245 (307)
T cd05098         166 LAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPG  245 (307)
T ss_pred             ccHHheEEcCCCcEEECCCcccccccccchhhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCc
Confidence            9999999999999999999998754311           123567887777778999999999999999999 8888842


Q ss_pred             CCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          571 DNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                        ....+........ ..         ...+.....++.+++.+||+.+|++||+|.+|++.|+++...
T Consensus       246 --~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~~l~~~~~~  302 (307)
T cd05098         246 --VPVEELFKLLKEG-HR---------MDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILAL  302 (307)
T ss_pred             --CCHHHHHHHHHcC-CC---------CCCCCcCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHHH
Confidence              2333333322211 10         111223345788999999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=100.00  E-value=1.4e-35  Score=302.93  Aligned_cols=243  Identities=20%  Similarity=0.368  Sum_probs=192.0

Q ss_pred             hhhcccccCCCeEEEEEEEC----CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          373 DFSNVIGSSPIGTVYKGTLS----NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~----~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      ++.+.||+|+||.||+|+..    .+..+|+|.+....    .....+.|.+|+.++++++||||+++++++...+  ..
T Consensus         7 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~----~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~   80 (267)
T cd05066           7 KIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGY----TEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSK--PV   80 (267)
T ss_pred             EeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCC----CHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCC--cc
Confidence            35588999999999999863    23468888775322    1234568999999999999999999999998776  56


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++||||+++|+|.++++.. ...+++.+...|+.+++.|++|||+.+  ++||||||+|||++.++.+|++|||+++...
T Consensus        81 ~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lH~~~--i~h~dlkp~nili~~~~~~~l~dfg~~~~~~  157 (267)
T cd05066          81 MIVTEYMENGSLDAFLRKH-DGQFTVIQLVGMLRGIASGMKYLSDMG--YVHRDLAARNILVNSNLVCKVSDFGLSRVLE  157 (267)
T ss_pred             EEEEEcCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCC--EeehhhchhcEEECCCCeEEeCCCCcccccc
Confidence            9999999999999998643 346899999999999999999999998  9999999999999999999999999987653


Q ss_pred             hhh------------hhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCC
Q 006019          529 MAE------------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  595 (664)
Q Consensus       529 ~~~------------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~  595 (664)
                      ...            ..+.+||+.....++.++||||||+++||+++ |+.||....  ..+........ ...     +
T Consensus       158 ~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~--~~~~~~~~~~~-~~~-----~  229 (267)
T cd05066         158 DDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMS--NQDVIKAIEEG-YRL-----P  229 (267)
T ss_pred             cccceeeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCC--HHHHHHHHhCC-CcC-----C
Confidence            211            12456777777778999999999999999887 999984322  22222222211 110     1


Q ss_pred             CCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 006019          596 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  636 (664)
Q Consensus       596 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i  636 (664)
                          .+...+..+.+++.+||+.+|++||+|.++++.|+++
T Consensus       230 ----~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  266 (267)
T cd05066         230 ----APMDCPAALHQLMLDCWQKDRNERPKFEQIVSILDKL  266 (267)
T ss_pred             ----CCCCCCHHHHHHHHHHcccCchhCCCHHHHHHHHHhh
Confidence                1122345688999999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=100.00  E-value=5.4e-35  Score=296.64  Aligned_cols=239  Identities=22%  Similarity=0.329  Sum_probs=190.6

Q ss_pred             cccccCCCeEEEEEEECC--C--cEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          376 NVIGSSPIGTVYKGTLSN--G--VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~--~--~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.||+|+||.||+|.+.+  +  ..+|+|.+......    ...++|.+|++++++++|+||+++++++.. .  ..++|
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~----~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~--~~~~v   73 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLS----DIMDDFLKEAAIMHSLDHENLIRLYGVVLT-H--PLMMV   73 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccH----HHHHHHHHHHHHHhhcCCCCccceeEEEcC-C--eEEEE
Confidence            468999999999999743  2  36899888654321    456789999999999999999999999987 4  67999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh-
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  530 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~-  530 (664)
                      +||+++|+|.+++.......++|.....++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++..... 
T Consensus        74 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~--i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~  151 (257)
T cd05040          74 TELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESKR--FIHRDLAARNILLASDDKVKIGDFGLMRALPQNE  151 (257)
T ss_pred             EEecCCCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhCC--ccccccCcccEEEecCCEEEeccccccccccccc
Confidence            99999999999987543357899999999999999999999998  999999999999999999999999998766331 


Q ss_pred             -----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 006019          531 -----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       531 -----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                                 ...+.+||+.....++.++|||||||++|||+| |+.||..  ....+............         
T Consensus       152 ~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~--~~~~~~~~~~~~~~~~~---------  220 (257)
T cd05040         152 DHYVMEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAG--LSGSQILKKIDKEGERL---------  220 (257)
T ss_pred             cceecccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHhcCCcC---------
Confidence                       123456777777778999999999999999999 9999842  22233332222111100         


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 006019          599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR  634 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~  634 (664)
                      ..+...+..+.+++.+||+.+|++||++.++++.|.
T Consensus       221 ~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~  256 (257)
T cd05040         221 ERPEACPQDIYNVMLQCWAHNPADRPTFAALREFLP  256 (257)
T ss_pred             CCCccCCHHHHHHHHHHCCCCcccCCCHHHHHHHhc
Confidence            112223457889999999999999999999999885

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=100.00  E-value=1.8e-35  Score=307.98  Aligned_cols=247  Identities=24%  Similarity=0.416  Sum_probs=190.9

Q ss_pred             hhhcccccCCCeEEEEEEEC-CCcE--EEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCcee
Q 006019          373 DFSNVIGSSPIGTVYKGTLS-NGVE--IAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~-~~~~--vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~  448 (664)
                      .+.+.||+|+||.||+|+.. ++..  +++|.+....    .....+.|.+|++++.++ +|+||+++++++...+  ..
T Consensus        10 ~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~----~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~--~~   83 (303)
T cd05088          10 KFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYA----SKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRG--YL   83 (303)
T ss_pred             eeeeeecCCCCceEEEEEEccCCceeeEEEEEecccC----CHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCC--Cc
Confidence            34588999999999999964 4543  4666553211    133456899999999999 8999999999998776  67


Q ss_pred             EEEEEecCCCChhhhhcccC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC
Q 006019          449 MMVFEYAPNGTLFEHIHIKE--------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY  514 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~  514 (664)
                      ++|+||+++|+|.++++...              ...+++.++..++.+++.|++|||+.+  ++||||||+|||+++++
T Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~g--i~H~dlkp~Nili~~~~  161 (303)
T cd05088          84 YLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ--FIHRDLAARNILVGENY  161 (303)
T ss_pred             eEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhCC--ccccccchheEEecCCC
Confidence            99999999999999986431              235889999999999999999999998  99999999999999999


Q ss_pred             ceEecccCchhhhhhh--------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcC
Q 006019          515 AAKLSDLSFWNEIAMA--------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSG  585 (664)
Q Consensus       515 ~~kl~DfGla~~~~~~--------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~  585 (664)
                      .+||+|||+++.....        ...+.+||+.....++.++|||||||++|||+| |..||...  ...+........
T Consensus       162 ~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~--~~~~~~~~~~~~  239 (303)
T cd05088         162 VAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGM--TCAELYEKLPQG  239 (303)
T ss_pred             cEEeCccccCcccchhhhcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccC--ChHHHHHHHhcC
Confidence            9999999998643211        123556777766678899999999999999998 99998422  222222222111


Q ss_pred             CCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          586 VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       586 ~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                       ...         ..+...+..+.+++.+||+.+|++||++.++++.|+++...
T Consensus       240 -~~~---------~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~l~~~~~~  283 (303)
T cd05088         240 -YRL---------EKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEE  283 (303)
T ss_pred             -CcC---------CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence             000         01112234688999999999999999999999999988654

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=2.7e-35  Score=304.61  Aligned_cols=250  Identities=16%  Similarity=0.222  Sum_probs=183.5

Q ss_pred             hhcccccCCCeEEEEEEEC--CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc---CCCcccceEEEEecC---CC
Q 006019          374 FSNVIGSSPIGTVYKGTLS--NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV---NHKNFVNLIGFCEEE---EP  445 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~--~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l---~H~niv~l~g~~~~~---~~  445 (664)
                      +.+.||+|+||.||+|+..  ++..||+|.+.......   .....+.+|+.+++.+   +||||++++++|...   ..
T Consensus         5 ~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~---~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~   81 (290)
T cd07862           5 CVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEE---GMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRE   81 (290)
T ss_pred             eeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCC---CchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCC
Confidence            4578999999999999863  46889999887544322   1234566777776665   699999999998632   12


Q ss_pred             ceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchh
Q 006019          446 FTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN  525 (664)
Q Consensus       446 ~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~  525 (664)
                      ...++|+||++ ++|.+++.......+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++
T Consensus        82 ~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~--iiH~dlkp~Nil~~~~~~~kl~Dfg~~~  158 (290)
T cd07862          82 TKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHR--VVHRDLKPQNILVTSSGQIKLADFGLAR  158 (290)
T ss_pred             CcEEEEEccCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeeCCCCHHHEEEcCCCCEEEccccceE
Confidence            25789999996 69999987555566899999999999999999999998  9999999999999999999999999987


Q ss_pred             hhhhh--------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCC-----CC---
Q 006019          526 EIAMA--------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-----PL---  589 (664)
Q Consensus       526 ~~~~~--------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~-----~~---  589 (664)
                      .....        ...+.+||......++.++|||||||++|||+||+.||....  ..+..........     ..   
T Consensus       159 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~--~~~~~~~i~~~~~~~~~~~~~~~  236 (290)
T cd07862         159 IYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSS--DVDQLGKILDVIGLPGEEDWPRD  236 (290)
T ss_pred             eccCCcccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCC--HHHHHHHHHHHhCCCChhhchhh
Confidence            55321        234567887777778999999999999999999999995322  1222222211100     00   


Q ss_pred             ----ccccCCCCC----CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          590 ----QQFVDPTLS----SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       590 ----~~~~d~~~~----~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                          .....+...    .........+.+++.+|++.||++||++.|+++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~  286 (290)
T cd07862         237 VALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  286 (290)
T ss_pred             hcccchhccCCCCCCHHHHccCCCHHHHHHHHHHhccCchhcCCHHHHhc
Confidence                000000000    011123456789999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.3e-35  Score=301.83  Aligned_cols=241  Identities=24%  Similarity=0.404  Sum_probs=195.6

Q ss_pred             hhhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      .+.+.||+|+||.||+|..++++.++||.+.....      ..+++.+|++++++++|+||+++++++....  ..++||
T Consensus         9 ~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~------~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~~v~   80 (261)
T cd05034           9 KLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTM------SPEAFLQEAQIMKKLRHDKLVQLYAVCSEEE--PIYIVT   80 (261)
T ss_pred             eeeeeeccCcceEEEEEEEcCCceEEEEEecCCcc------CHHHHHHHHHHHhhCCCCCEeeeeeeeecCC--ceEEEE
Confidence            34588999999999999988888899998864321      2367999999999999999999999998766  569999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++++|.++++......+++..+..++.+++.|++|||+.+  ++|+||||+||++++++.+|++|||+++.....  
T Consensus        81 e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~~--i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~  158 (261)
T cd05034          81 EYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESRN--YIHRDLAARNILVGENLVCKIADFGLARLIEDDEY  158 (261)
T ss_pred             eccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCcchheEEEcCCCCEEECccccceeccchhh
Confidence            9999999999997655567999999999999999999999998  999999999999999999999999998765321  


Q ss_pred             --------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 006019          531 --------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  601 (664)
Q Consensus       531 --------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  601 (664)
                              ...+.+||......++.++|||||||++||++| |+.||...  ...+..........          ...+
T Consensus       159 ~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~--~~~~~~~~~~~~~~----------~~~~  226 (261)
T cd05034         159 TAREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGM--TNREVLEQVERGYR----------MPRP  226 (261)
T ss_pred             hhhhccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHcCCC----------CCCC
Confidence                    123557887777778999999999999999999 99998432  22222222222110          0111


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHh
Q 006019          602 EEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  635 (664)
Q Consensus       602 ~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~  635 (664)
                      ...+.++.+++.+||+.+|++||+++++.+.|+.
T Consensus       227 ~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~l~~  260 (261)
T cd05034         227 PNCPEELYDLMLQCWDKDPEERPTFEYLQSFLED  260 (261)
T ss_pred             CCCCHHHHHHHHHHcccCcccCCCHHHHHHHHhc
Confidence            2224578999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.6e-35  Score=305.61  Aligned_cols=250  Identities=22%  Similarity=0.298  Sum_probs=187.8

Q ss_pred             hhhcccccCCCeEEEEEEECC---------------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceE
Q 006019          373 DFSNVIGSSPIGTVYKGTLSN---------------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI  437 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~~---------------~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~  437 (664)
                      .+.+.||+|+||.||+++..+               ...||+|.+....    .......|.+|++++++++|+|+++++
T Consensus         8 ~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~ei~~l~~l~h~~i~~~~   83 (295)
T cd05097           8 RLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADV----TKTARNDFLKEIKIMSRLKNPNIIRLL   83 (295)
T ss_pred             eehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCC----CHHHHHHHHHHHHHHHhCCCCCcCeEE
Confidence            455789999999999987532               2347888875332    123456799999999999999999999


Q ss_pred             EEEecCCCceeEEEEEecCCCChhhhhcccC----------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCC
Q 006019          438 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE----------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSA  507 (664)
Q Consensus       438 g~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~----------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~N  507 (664)
                      +++...+  ..++||||+++++|.+++....          ...++|..+++++.+++.|++|||+.+  ++||||||+|
T Consensus        84 ~~~~~~~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~--i~H~dlkp~N  159 (295)
T cd05097          84 GVCVSDD--PLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLN--FVHRDLATRN  159 (295)
T ss_pred             EEEcCCC--ccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhcC--eeccccChhh
Confidence            9998776  6799999999999999885321          124789999999999999999999998  9999999999


Q ss_pred             eEecCCCceEecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh--CCCCccCCCCC
Q 006019          508 VHLTEDYAAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT--GRLPYLVDNGS  574 (664)
Q Consensus       508 ILld~~~~~kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t--G~~P~~~~~~~  574 (664)
                      |++++++.+||+|||+++.....           ...+.+||......++.++|||||||++|||+|  |..||...  .
T Consensus       160 ill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~--~  237 (295)
T cd05097         160 CLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLL--S  237 (295)
T ss_pred             EEEcCCCcEEecccccccccccCcceeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCccc--C
Confidence            99999999999999998754221           123556777777778999999999999999998  56677422  2


Q ss_pred             hHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHh
Q 006019          575 LEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  635 (664)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~  635 (664)
                      ..+............   ........+...+..+.+++.+||+.+|++||+|.+|++.|++
T Consensus       238 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~li~~~l~~~p~~RPs~~~i~~~l~~  295 (295)
T cd05097         238 DEQVIENTGEFFRNQ---GRQIYLSQTPLCPSPVFKLMMRCWSRDIKDRPTFNKIHHFLRE  295 (295)
T ss_pred             hHHHHHHHHHhhhhc---cccccCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHhC
Confidence            222221111000000   0000001112233579999999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=100.00  E-value=5.8e-35  Score=304.39  Aligned_cols=252  Identities=21%  Similarity=0.333  Sum_probs=197.8

Q ss_pred             HHHhhhhcccccCCCeEEEEEEEC--------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEE
Q 006019          369 AACEDFSNVIGSSPIGTVYKGTLS--------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGF  439 (664)
Q Consensus       369 ~~~~~~~~~iG~G~~G~Vy~g~~~--------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~  439 (664)
                      .....+.+.||+|+||.||+|+..        ++..+|+|.+....    .....+++.+|+.+++.+ +||||++++++
T Consensus        14 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~----~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~   89 (304)
T cd05101          14 RDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDA----TEKDLSDLVSEMEMMKMIGKHKNIINLLGA   89 (304)
T ss_pred             HHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeeccccc----chHHHHHHHHHHHHHHhhccCCCchheeEE
Confidence            333345688999999999999741        24578888875321    123356799999999999 89999999999


Q ss_pred             EecCCCceeEEEEEecCCCChhhhhcccC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCC
Q 006019          440 CEEEEPFTRMMVFEYAPNGTLFEHIHIKE--------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNS  505 (664)
Q Consensus       440 ~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~  505 (664)
                      +....  ..++||||+++|+|.+++....              ...++|.++..++.|++.||+|||+.+  ++||||||
T Consensus        90 ~~~~~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~g--ivH~dlkp  165 (304)
T cd05101          90 CTQDG--PLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQK--CIHRDLAA  165 (304)
T ss_pred             EecCC--ceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHCC--eeeccccc
Confidence            98876  6799999999999999986431              235889999999999999999999998  99999999


Q ss_pred             CCeEecCCCceEecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCC
Q 006019          506 SAVHLTEDYAAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNG  573 (664)
Q Consensus       506 ~NILld~~~~~kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~  573 (664)
                      +||++++++.+||+|||+++.....           ...+.+||......++.++||||||+++|||+| |..||.  ..
T Consensus       166 ~Nili~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~--~~  243 (304)
T cd05101         166 RNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYP--GI  243 (304)
T ss_pred             ceEEEcCCCcEEECCCccceecccccccccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcc--cC
Confidence            9999999999999999998765321           123567887777778999999999999999999 788883  23


Q ss_pred             ChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCC
Q 006019          574 SLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  640 (664)
Q Consensus       574 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~  640 (664)
                      ...++........ ..         ..+..++..+.+++.+||+.+|++||+|.|+++.|+++....
T Consensus       244 ~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~~~~  300 (304)
T cd05101         244 PVEELFKLLKEGH-RM---------DKPANCTNELYMMMRDCWHAIPSHRPTFKQLVEDLDRILTLT  300 (304)
T ss_pred             CHHHHHHHHHcCC-cC---------CCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHHHHhh
Confidence            3444443332221 10         112234467889999999999999999999999999987653

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=100.00  E-value=5.1e-35  Score=302.61  Aligned_cols=245  Identities=23%  Similarity=0.350  Sum_probs=191.1

Q ss_pred             hhcccccCCCeEEEEEEEC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCce
Q 006019          374 FSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  447 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  447 (664)
                      +.+.||+|+||.||+|...      ....+++|.+....    .....+++.+|++++++++||||++++++|...+  .
T Consensus         4 ~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~----~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~   77 (290)
T cd05045           4 LGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENA----SSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDG--P   77 (290)
T ss_pred             ccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCC----CHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCC--C
Confidence            3478999999999999853      23467777775322    1233467999999999999999999999998777  5


Q ss_pred             eEEEEEecCCCChhhhhccc----------------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCC
Q 006019          448 RMMVFEYAPNGTLFEHIHIK----------------------ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNS  505 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~----------------------~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~  505 (664)
                      .++++||+++|+|.+++...                      ....+++.....++.+++.||+|||+.+  ++||||||
T Consensus        78 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~--ivH~dikp  155 (290)
T cd05045          78 LLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMK--LVHRDLAA  155 (290)
T ss_pred             cEEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHCC--eehhhhhh
Confidence            69999999999999987532                      1235889999999999999999999988  99999999


Q ss_pred             CCeEecCCCceEecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCC
Q 006019          506 SAVHLTEDYAAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNG  573 (664)
Q Consensus       506 ~NILld~~~~~kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~  573 (664)
                      +|||+++++.+||+|||+++.....           ...+.+||......++.++||||||+++|||+| |+.||..  .
T Consensus       156 ~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~--~  233 (290)
T cd05045         156 RNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPG--I  233 (290)
T ss_pred             heEEEcCCCcEEeccccccccccCccchhcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCC--C
Confidence            9999999999999999998754211           123456776666778999999999999999999 9999842  2


Q ss_pred             ChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          574 SLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       574 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      ...++....... ..      .   ..+......+.+++.+||+.+|++||++.++++.|+++.+
T Consensus       234 ~~~~~~~~~~~~-~~------~---~~~~~~~~~~~~~i~~cl~~~P~~Rp~~~~i~~~l~~~~~  288 (290)
T cd05045         234 APERLFNLLKTG-YR------M---ERPENCSEEMYNLMLTCWKQEPDKRPTFADISKELEKMMV  288 (290)
T ss_pred             CHHHHHHHHhCC-CC------C---CCCCCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHHHHh
Confidence            233322221111 00      0   1122233568899999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4e-35  Score=302.70  Aligned_cols=241  Identities=19%  Similarity=0.240  Sum_probs=189.6

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||++... ++..||+|++.......  ......+.+|++++++++|+||+++++++...+  ..++|||
T Consensus         5 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~e   80 (285)
T cd05605           5 YRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKK--RKGEAMALNEKQILEKVNSRFVVSLAYAYETKD--ALCLVLT   80 (285)
T ss_pred             EEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhh--hhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCC--eEEEEEe
Confidence            478999999999999964 68899999986543221  123456788999999999999999999998776  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      |+++|+|.+++.......+++.....++.+++.|++|||+.+  ++||||||+||++++++.++|+|||+++.....   
T Consensus        81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~  158 (285)
T cd05605          81 LMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRER--IVYRDLKPENILLDDYGHIRISDLGLAVEIPEGETI  158 (285)
T ss_pred             ccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHCC--cEecCCCHHHEEECCCCCEEEeeCCCceecCCCCcc
Confidence            999999998886544457999999999999999999999998  999999999999999999999999998764321   


Q ss_pred             -----hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCC-hHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          531 -----EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGS-LEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       531 -----~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                           ...+.+||......++.++|||||||++|||++|+.||...... ..+.+...+..          ....++...
T Consensus       159 ~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~----------~~~~~~~~~  228 (285)
T cd05605         159 RGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKVKREEVERRVKE----------DQEEYSEKF  228 (285)
T ss_pred             ccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCchhhHHHHHHHHhhh----------cccccCccc
Confidence                 23455788877777899999999999999999999999533221 11111111111          011122334


Q ss_pred             HHHHHHHHHHhccCCCCCCC-----CHHHHHH
Q 006019          605 LETLGELIKSCVRADPEKRP-----TMRDIAA  631 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RP-----s~~ev~~  631 (664)
                      +..+.+++.+||+.||++||     +++++++
T Consensus       229 ~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~  260 (285)
T cd05605         229 SEAARSICRQLLTKDPGFRLGCRGEGAEEVKA  260 (285)
T ss_pred             CHHHHHHHHHHccCCHHHhcCCCCCCHHHHhc
Confidence            45688999999999999999     7777754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=100.00  E-value=4.6e-35  Score=299.40  Aligned_cols=244  Identities=19%  Similarity=0.334  Sum_probs=193.5

Q ss_pred             hhhhcccccCCCeEEEEEEECC-C---cEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCce
Q 006019          372 EDFSNVIGSSPIGTVYKGTLSN-G---VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  447 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~~~-~---~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  447 (664)
                      ..+.+.||+|+||.||+|+... +   ..+|+|.+....    .....++|..|++++++++||||+++++++.+.+  .
T Consensus         6 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~--~   79 (269)
T cd05065           6 VKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGY----TEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSR--P   79 (269)
T ss_pred             eEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCC----CHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCC--c
Confidence            3456889999999999999753 3   368999875432    1334578999999999999999999999998776  5


Q ss_pred             eEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhh
Q 006019          448 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~  527 (664)
                      .++||||+++|+|.++++.. ...+++.++..++.+++.|++|||+.+  ++||||||+||+++.++.+|++|||+++..
T Consensus        80 ~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~~l~~al~~lH~~g--~~H~dl~p~nili~~~~~~kl~dfg~~~~~  156 (269)
T cd05065          80 VMIITEFMENGALDSFLRQN-DGQFTVIQLVGMLRGIAAGMKYLSEMN--YVHRDLAARNILVNSNLVCKVSDFGLSRFL  156 (269)
T ss_pred             eEEEEecCCCCcHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHHCC--EeecccChheEEEcCCCcEEECCCcccccc
Confidence            69999999999999998643 456899999999999999999999988  999999999999999999999999998754


Q ss_pred             hhhh--------------hhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccc
Q 006019          528 AMAE--------------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQF  592 (664)
Q Consensus       528 ~~~~--------------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~  592 (664)
                      ....              ..+.+||+.....++.++|||||||++||+++ |+.||...  +..+........ ...   
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~--~~~~~~~~i~~~-~~~---  230 (269)
T cd05065         157 EDDTSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDM--SNQDVINAIEQD-YRL---  230 (269)
T ss_pred             ccCccccccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCC--CHHHHHHHHHcC-CcC---
Confidence            3211              13456887777788999999999999999987 99998432  222222222111 110   


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 006019          593 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  636 (664)
Q Consensus       593 ~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i  636 (664)
                            ..+.+++..+.+++.+||+.+|++||++.+|+..|+++
T Consensus       231 ------~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  268 (269)
T cd05065         231 ------PPPMDCPTALHQLMLDCWQKDRNARPKFGQIVSTLDKM  268 (269)
T ss_pred             ------CCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence                  11223345688999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=2.6e-35  Score=311.38  Aligned_cols=239  Identities=18%  Similarity=0.250  Sum_probs=189.2

Q ss_pred             hhhcccccCCCeEEEEEEECC--CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLSN--GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  450 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~~--~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~l  450 (664)
                      .+.+.||+|+||.||+|...+  +..||+|++.......  ....+.+.+|+++++.++||||+++++++.+.+  ..++
T Consensus        33 ~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~--~~~l  108 (340)
T PTZ00426         33 NFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIK--QKQVDHVFSERKILNYINHPFCVNLYGSFKDES--YLYL  108 (340)
T ss_pred             EEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhh--hhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCC--EEEE
Confidence            345889999999999998643  3689999886433211  223457889999999999999999999998877  7799


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh-
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM-  529 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~-  529 (664)
                      ||||+++|+|.+++..  ...+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.... 
T Consensus       109 v~Ey~~~g~L~~~i~~--~~~~~~~~~~~~~~qi~~aL~~LH~~~--ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~~  184 (340)
T PTZ00426        109 VLEFVIGGEFFTFLRR--NKRFPNDVGCFYAAQIVLIFEYLQSLN--IVYRDLKPENLLLDKDGFIKMTDFGFAKVVDTR  184 (340)
T ss_pred             EEeCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEccCCCHHHEEECCCCCEEEecCCCCeecCCC
Confidence            9999999999999863  346889999999999999999999998  99999999999999999999999999876532 


Q ss_pred             -----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          530 -----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       530 -----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                           ....+.+||......++.++|||||||++|||+||+.||...  +..............           ++...
T Consensus       185 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~--~~~~~~~~i~~~~~~-----------~p~~~  251 (340)
T PTZ00426        185 TYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYAN--EPLLIYQKILEGIIY-----------FPKFL  251 (340)
T ss_pred             cceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCC--CHHHHHHHHhcCCCC-----------CCCCC
Confidence                 223466788877777899999999999999999999999532  222222222222111           12222


Q ss_pred             HHHHHHHHHHhccCCCCCCC-----CHHHHHHH
Q 006019          605 LETLGELIKSCVRADPEKRP-----TMRDIAAI  632 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RP-----s~~ev~~~  632 (664)
                      ...+.+++.+|++.||++|+     +++++.+.
T Consensus       252 ~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~h  284 (340)
T PTZ00426        252 DNNCKHLMKKLLSHDLTKRYGNLKKGAQNVKEH  284 (340)
T ss_pred             CHHHHHHHHHHcccCHHHcCCCCCCCHHHHHcC
Confidence            34578999999999999995     78877653

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.6e-35  Score=299.11  Aligned_cols=239  Identities=24%  Similarity=0.363  Sum_probs=190.3

Q ss_pred             cccccCCCeEEEEEEECC----CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          376 NVIGSSPIGTVYKGTLSN----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~----~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.||+|+||.||+|.+..    +..+|+|.+......    ...+++.+|++++++++|+|||++++++...   ..++|
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~----~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~---~~~~v   73 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIA----AGKKEFLREASVMAQLDHPCIVRLIGVCKGE---PLMLV   73 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccch----HHHHHHHHHHHHHHhcCCCCeeeEEEEEcCC---ceEEE
Confidence            469999999999998532    267899987643321    3456899999999999999999999988643   45899


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhhh
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  531 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~~  531 (664)
                      |||+++|+|.+++...  ..+++..+..++.+++.|++|||+.+  ++||||||+||+++.++.+||+|||+++......
T Consensus        74 ~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lh~~~--i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~  149 (257)
T cd05060          74 MELAPLGPLLKYLKKR--REIPVSDLKELAHQVAMGMAYLESKH--FVHRDLAARNVLLVNRHQAKISDFGMSRALGAGS  149 (257)
T ss_pred             EEeCCCCcHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHhhcC--eeccCcccceEEEcCCCcEEeccccccceeecCC
Confidence            9999999999999643  36899999999999999999999988  9999999999999999999999999987553211


Q ss_pred             ------------hhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 006019          532 ------------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       532 ------------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                                  ..+.+||......++.++|||||||++|||+| |+.||...  ...+........ ...         
T Consensus       150 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~--~~~~~~~~~~~~-~~~---------  217 (257)
T cd05060         150 DYYRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEM--KGAEVIAMLESG-ERL---------  217 (257)
T ss_pred             cccccccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccC--CHHHHHHHHHcC-CcC---------
Confidence                        23556787777778999999999999999998 99999432  222332222221 111         


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhh
Q 006019          599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  637 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~  637 (664)
                      ..+...+..+.+++.+||..+|++||++.++++.|+++.
T Consensus       218 ~~~~~~~~~l~~li~~cl~~~p~~Rp~~~~l~~~l~~~~  256 (257)
T cd05060         218 PRPEECPQEIYSIMLSCWKYRPEDRPTFSELESTFRRDP  256 (257)
T ss_pred             CCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhcc
Confidence            112233457889999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=5.2e-35  Score=307.38  Aligned_cols=236  Identities=18%  Similarity=0.283  Sum_probs=186.3

Q ss_pred             cccccCCCeEEEEEEE----CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          376 NVIGSSPIGTVYKGTL----SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~----~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.||+|+||.||+++.    ..++.+|+|.+....... .......+.+|+++++.++||||+++++++...+  ..++|
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~-~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~--~~~lv   78 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVR-NQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGG--KLYLI   78 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHh-hhhhHHHHHHHHHHHHhCCCCchhceeeEEecCC--eEEEE
Confidence            4699999999999985    357889999987532211 1123356789999999999999999999998876  67999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh--
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM--  529 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~--  529 (664)
                      |||+++|+|.+++..  ...+.+.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....  
T Consensus        79 ~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  154 (323)
T cd05584          79 LEYLSGGELFMHLER--EGIFMEDTACFYLSEISLALEHLHQQG--IIYRDLKPENILLDAQGHVKLTDFGLCKESIHEG  154 (323)
T ss_pred             EeCCCCchHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHeEECCCCCEEEeeCcCCeecccCC
Confidence            999999999998863  345788888899999999999999998  99999999999999999999999999864321  


Q ss_pred             -------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          530 -------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       530 -------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                             ....+.+||.......+.++|||||||++|||+||+.||...  +..+...........           .+.
T Consensus       155 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~--~~~~~~~~~~~~~~~-----------~~~  221 (323)
T cd05584         155 TVTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAE--NRKKTIDKILKGKLN-----------LPP  221 (323)
T ss_pred             CcccccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCC--CHHHHHHHHHcCCCC-----------CCC
Confidence                   123456788887777889999999999999999999999432  223333333322111           122


Q ss_pred             HHHHHHHHHHHHhccCCCCCCC-----CHHHHHH
Q 006019          603 EQLETLGELIKSCVRADPEKRP-----TMRDIAA  631 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RP-----s~~ev~~  631 (664)
                      .....+.+++.+||+.+|++||     ++.++++
T Consensus       222 ~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~  255 (323)
T cd05584         222 YLTPEARDLLKKLLKRNPSSRLGAGPGDAAEVQS  255 (323)
T ss_pred             CCCHHHHHHHHHHcccCHhHcCCCCCCCHHHHhc
Confidence            2235688999999999999999     7777765

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=2.8e-35  Score=302.54  Aligned_cols=241  Identities=20%  Similarity=0.233  Sum_probs=187.8

Q ss_pred             cccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEecC
Q 006019          378 IGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAP  456 (664)
Q Consensus       378 iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey~~  456 (664)
                      ||+|+||.||+++.. +|..+|+|.+.......  ....+.+..|++++++++||||+++.+++....  ..++||||++
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~--~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~--~~~lv~e~~~   76 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKK--KSGEKMALLEKEILEKVNSPFIVNLAYAFESKT--HLCLVMSLMN   76 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhc--chhhHHHHHHHHHHHhcCCCcEEEEEEEEecCC--eEEEEEecCC
Confidence            799999999999964 58999999986433222  122345677999999999999999999998766  6799999999


Q ss_pred             CCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh-------
Q 006019          457 NGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM-------  529 (664)
Q Consensus       457 ~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~-------  529 (664)
                      +|+|.++++......+++..+..++.+++.|++|||+.+  ++||||||+||+++.++.+||+|||++.....       
T Consensus        77 g~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~--ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~  154 (277)
T cd05607          77 GGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLHSMD--IVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKTITQR  154 (277)
T ss_pred             CCCHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCC--EEEccCChHhEEEcCCCCEEEeeceeeeecCCCceeecc
Confidence            999998886555566899999999999999999999998  99999999999999999999999999875432       


Q ss_pred             -hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCC--ChHHHHHHHhcCCCCCccccCCCCCCCCHHHHH
Q 006019          530 -AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG--SLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE  606 (664)
Q Consensus       530 -~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  606 (664)
                       ....+.+||......++.++|||||||++|||+||+.||.....  ...+.........      ....    ......
T Consensus       155 ~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~------~~~~----~~~~~~  224 (277)
T cd05607         155 AGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEELKRRTLEDE------VKFE----HQNFTE  224 (277)
T ss_pred             CCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHhhccc------cccc----cccCCH
Confidence             12345678887777789999999999999999999999953222  1122222222110      0000    112234


Q ss_pred             HHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 006019          607 TLGELIKSCVRADPEKRPTMRDIAAILR  634 (664)
Q Consensus       607 ~l~~l~~~Cl~~~P~~RPs~~ev~~~L~  634 (664)
                      ++.+++.+||+.||++||+++|+++.+.
T Consensus       225 ~~~~li~~~L~~~P~~R~~~~~~~~~~~  252 (277)
T cd05607         225 ESKDICRLFLAKKPEDRLGSREKNDDPR  252 (277)
T ss_pred             HHHHHHHHHhccCHhhCCCCccchhhhh
Confidence            6889999999999999999987764333

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=1.4e-35  Score=311.15  Aligned_cols=231  Identities=21%  Similarity=0.282  Sum_probs=184.5

Q ss_pred             cccccCCCeEEEEEEE----CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          376 NVIGSSPIGTVYKGTL----SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~----~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.||+|+||.||+++.    .+|..+|+|++.......   .....+..|++++++++||||+++++++...+  ..++|
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~--~~~lv   76 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKV---RDRVRTKMERDILAEVNHPFIVKLHYAFQTEG--KLYLI   76 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhh---hhHHHHHHHHHHHHhCCCCCcccEEEEEEcCC--EEEEE
Confidence            4699999999999874    357899999987543221   22346788999999999999999999998776  67999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh-
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  530 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~-  530 (664)
                      |||+++|+|.+++..  ...+++.....++.+++.||+|||+++  |+||||||+|||+++++.+||+|||+++..... 
T Consensus        77 ~e~~~~~~L~~~l~~--~~~l~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~  152 (318)
T cd05582          77 LDFLRGGDLFTRLSK--EVMFTEEDVKFYLAELALALDHLHSLG--IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHE  152 (318)
T ss_pred             EcCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--EecCCCCHHHeEECCCCcEEEeeccCCcccCCCC
Confidence            999999999999853  346899999999999999999999998  999999999999999999999999998764322 


Q ss_pred             --------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          531 --------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       531 --------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                              ...+.+||......++.++|||||||++|||+||+.||..  ....+..........           ..+.
T Consensus       153 ~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~--~~~~~~~~~i~~~~~-----------~~p~  219 (318)
T cd05582         153 KKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQG--KDRKETMTMILKAKL-----------GMPQ  219 (318)
T ss_pred             CceecccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCC--CCHHHHHHHHHcCCC-----------CCCC
Confidence                    2345578877777788999999999999999999999943  222333333322211           1122


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHH
Q 006019          603 EQLETLGELIKSCVRADPEKRPTMRD  628 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~~e  628 (664)
                      .....+.+++.+||+.||++||++.+
T Consensus       220 ~~~~~~~~li~~~l~~~P~~R~~a~~  245 (318)
T cd05582         220 FLSPEAQSLLRALFKRNPANRLGAGP  245 (318)
T ss_pred             CCCHHHHHHHHHHhhcCHhHcCCCCC
Confidence            23356889999999999999999655

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=100.00  E-value=5e-35  Score=303.68  Aligned_cols=247  Identities=23%  Similarity=0.333  Sum_probs=187.6

Q ss_pred             hhhcccccCCCeEEEEEEEC-----------------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccc
Q 006019          373 DFSNVIGSSPIGTVYKGTLS-----------------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN  435 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~-----------------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~  435 (664)
                      .+.+.||+|+||.||++...                 ++..+|+|.+.....    .....+|.+|++++++++|+||++
T Consensus         8 ~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~----~~~~~~~~~E~~~l~~l~~~~i~~   83 (296)
T cd05095           8 TFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDAN----KNARNDFLKEIKIMSRLKDPNIIR   83 (296)
T ss_pred             eeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCC----HHHHHHHHHHHHHHHhCCCCCcce
Confidence            35578999999999998642                 234678888754321    234568999999999999999999


Q ss_pred             eEEEEecCCCceeEEEEEecCCCChhhhhcccC---------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCC
Q 006019          436 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE---------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSS  506 (664)
Q Consensus       436 l~g~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~---------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~  506 (664)
                      +++++...+  ..++||||+++|+|.+++....         ...+++.+...++.+++.|++|||+++  ++||||||+
T Consensus        84 ~~~~~~~~~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~--i~H~dlkp~  159 (296)
T cd05095          84 LLAVCITSD--PLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLN--FVHRDLATR  159 (296)
T ss_pred             EEEEEecCC--ccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHCC--eecccCChh
Confidence            999998877  5699999999999999986432         134788999999999999999999998  999999999


Q ss_pred             CeEecCCCceEecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh--CCCCccCCCC
Q 006019          507 AVHLTEDYAAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT--GRLPYLVDNG  573 (664)
Q Consensus       507 NILld~~~~~kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t--G~~P~~~~~~  573 (664)
                      |||+++++.+||+|||+++.....           ...+.+||......++.++|||||||++|||+|  |..||..  .
T Consensus       160 Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~--~  237 (296)
T cd05095         160 NCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQ--L  237 (296)
T ss_pred             eEEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCCCCccc--c
Confidence            999999999999999998764221           123345665555678899999999999999998  7788742  2


Q ss_pred             ChHHHHHHH---hcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHh
Q 006019          574 SLEDWAADY---LSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  635 (664)
Q Consensus       574 ~~~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~  635 (664)
                      ...+.....   .....  .....    ..+..++..+.+++.+||+.||++||+|.+|++.|++
T Consensus       238 ~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~  296 (296)
T cd05095         238 SDEQVIENTGEFFRDQG--RQVYL----PKPALCPDSLYKLMLSCWRRNAKERPSFQEIHATLLE  296 (296)
T ss_pred             ChHHHHHHHHHHHhhcc--ccccC----CCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence            222222111   11000  00011    1122234678899999999999999999999999874

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.6e-35  Score=304.07  Aligned_cols=243  Identities=21%  Similarity=0.334  Sum_probs=191.4

Q ss_pred             hhhcccccCCCeEEEEEEECC------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCc
Q 006019          373 DFSNVIGSSPIGTVYKGTLSN------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF  446 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~~------~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  446 (664)
                      .+.+.||+|+||.||+|...+      +..+|+|.+....    .......|.+|+++++.++|+||+++++++....  
T Consensus         9 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~----~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--   82 (277)
T cd05032           9 TLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENA----SMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQ--   82 (277)
T ss_pred             eEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCcc----CHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCC--
Confidence            345889999999999998643      3679999875322    1233467899999999999999999999998876  


Q ss_pred             eeEEEEEecCCCChhhhhcccC--------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEe
Q 006019          447 TRMMVFEYAPNGTLFEHIHIKE--------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKL  518 (664)
Q Consensus       447 ~~~lV~Ey~~~GsL~~~l~~~~--------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl  518 (664)
                      ..++||||+++|+|.+++....        ...++|..+..++.+++.||+|||+.+  ++||||||+||++++++.+||
T Consensus        83 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~di~p~nill~~~~~~kl  160 (277)
T cd05032          83 PTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKK--FVHRDLAARNCMVAEDLTVKI  160 (277)
T ss_pred             CcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhCC--ccccccChheEEEcCCCCEEE
Confidence            5699999999999999986421        234789999999999999999999988  999999999999999999999


Q ss_pred             cccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCC
Q 006019          519 SDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGV  586 (664)
Q Consensus       519 ~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~  586 (664)
                      +|||+++.....           ...+.+||.......+.++|||||||++||++| |+.||..  ....+........ 
T Consensus       161 ~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~--~~~~~~~~~~~~~-  237 (277)
T cd05032         161 GDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQG--LSNEEVLKFVIDG-  237 (277)
T ss_pred             CCcccchhhccCcccccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCcc--CCHHHHHHHHhcC-
Confidence            999998765321           123556887777778999999999999999999 9999842  2222222222211 


Q ss_pred             CCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHh
Q 006019          587 QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  635 (664)
Q Consensus       587 ~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~  635 (664)
                      .         ....+..++..+.+++.+||+.+|++|||+.++++.|++
T Consensus       238 ~---------~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  277 (277)
T cd05032         238 G---------HLDLPENCPDKLLELMRMCWQYNPKMRPTFLEIVSSLKD  277 (277)
T ss_pred             C---------CCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHhcC
Confidence            1         111222235678999999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-34  Score=293.74  Aligned_cols=251  Identities=23%  Similarity=0.355  Sum_probs=188.5

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhc--cCCCcccceEEEEecCC--CceeE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSK--VNHKNFVNLIGFCEEEE--PFTRM  449 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~--l~H~niv~l~g~~~~~~--~~~~~  449 (664)
                      +.++||+|+||.||||.+.+ +.||||++..        ...+.|..|-++.+.  ++|+||++++++-....  ..+.+
T Consensus       214 l~eli~~Grfg~V~KaqL~~-~~VAVKifp~--------~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eyw  284 (534)
T KOG3653|consen  214 LLELIGRGRFGCVWKAQLDN-RLVAVKIFPE--------QEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYW  284 (534)
T ss_pred             hHHHhhcCccceeehhhccC-ceeEEEecCH--------HHHHHHHhHHHHHhccCccchhHHHhhchhccCCcccccee
Confidence            34679999999999999954 8999999853        335678888888775  58999999999875433  23568


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhc-------CCCCeEEeCcCCCCeEecCCCceEecccC
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-------LNPPIAHNYLNSSAVHLTEDYAAKLSDLS  522 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~-------~~~~ivHrDLk~~NILld~~~~~kl~DfG  522 (664)
                      ||+||.++|+|.++|.   ...++|....+||..+++||+|||+       .+|+|+|||||++||||..|+++.|+|||
T Consensus       285 LVt~fh~kGsL~dyL~---~ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFG  361 (534)
T KOG3653|consen  285 LVTEFHPKGSLCDYLK---ANTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFG  361 (534)
T ss_pred             EEeeeccCCcHHHHHH---hccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccc
Confidence            9999999999999995   4569999999999999999999995       34689999999999999999999999999


Q ss_pred             chhhhhh-----------hhhhcccccccCC------CCCCcCCcchhhHHHHHHHHhCCCCc------------c---C
Q 006019          523 FWNEIAM-----------AEMAATSKKLSSA------PSASLESNVYNFGVLLFEMVTGRLPY------------L---V  570 (664)
Q Consensus       523 la~~~~~-----------~~~~~~~pe~~~~------~~~s~ksDVySfGvvl~El~tG~~P~------------~---~  570 (664)
                      +|..+..           ++..|++||...+      +..-.+.||||.|.|||||+++..-+            .   +
T Consensus       362 LAl~~~p~~~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG  441 (534)
T KOG3653|consen  362 LALRLEPGKPQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVG  441 (534)
T ss_pred             eeEEecCCCCCcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhc
Confidence            9987742           2334566765432      22234689999999999999964322            1   1


Q ss_pred             CCCChHHHHHHHhcCCCCCccccCCCCCC--CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCCC
Q 006019          571 DNGSLEDWAADYLSGVQPLQQFVDPTLSS--FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPD  642 (664)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~~  642 (664)
                      ....+.+...-+++.      -..|.+.+  .....+..+.+.+..||..||+.|.|+.-|.+++.++....+.
T Consensus       442 ~hPt~e~mq~~VV~k------K~RP~~p~~W~~h~~~~~l~et~EeCWDhDaeARLTA~Cv~eR~~~l~~~~~~  509 (534)
T KOG3653|consen  442 NHPTLEEMQELVVRK------KQRPKIPDAWRKHAGMAVLCETIEECWDHDAEARLTAGCVEERMAELMMLWED  509 (534)
T ss_pred             CCCCHHHHHHHHHhh------ccCCCChhhhhcCccHHHHHHHHHHHcCCchhhhhhhHHHHHHHHHHhccCCc
Confidence            112222222222221      11122221  0123456788999999999999999999999999999776654

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=100.00  E-value=1.7e-35  Score=301.15  Aligned_cols=243  Identities=21%  Similarity=0.366  Sum_probs=193.9

Q ss_pred             HHhhhhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeE
Q 006019          370 ACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  449 (664)
Q Consensus       370 ~~~~~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~  449 (664)
                      ....+.+.||+|+||.||+|...++..+++|.+....      ...+.|.+|++++++++|+||+++.+++.+ .  ..+
T Consensus         6 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~------~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~--~~~   76 (260)
T cd05073           6 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS------MSVEAFLAEANVMKTLQHDKLVKLHAVVTK-E--PIY   76 (260)
T ss_pred             cceeEEeEecCccceEEEEEEecCCccEEEEecCCCh------hHHHHHHHHHHHHHhcCCCCcceEEEEEcC-C--CeE
Confidence            3344568999999999999998888889998875321      234679999999999999999999999876 4  568


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                      ++|||+++|+|.+++.......+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||.++....
T Consensus        77 ~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~--i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~  154 (260)
T cd05073          77 IITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRN--YIHRDLRAANILVSASLVCKIADFGLARVIED  154 (260)
T ss_pred             EEEEeCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhCC--ccccccCcceEEEcCCCcEEECCCcceeeccC
Confidence            9999999999999997655667899999999999999999999988  99999999999999999999999998875432


Q ss_pred             h----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 006019          530 A----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       530 ~----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                      .          ...+.+||+.....++.++|||||||++||++| |+.||....  ..+.......+ ...     +   
T Consensus       155 ~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~--~~~~~~~~~~~-~~~-----~---  223 (260)
T cd05073         155 NEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMS--NPEVIRALERG-YRM-----P---  223 (260)
T ss_pred             CCcccccCCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCC--HHHHHHHHhCC-CCC-----C---
Confidence            1          123556887777778999999999999999999 999984322  22222211111 110     1   


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHh
Q 006019          599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  635 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~  635 (664)
                       .+...+.++.+++.+||+.+|++||++.++.+.|+.
T Consensus       224 -~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~L~~  259 (260)
T cd05073         224 -RPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDD  259 (260)
T ss_pred             -CcccCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence             112233568899999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=100.00  E-value=9.1e-35  Score=307.08  Aligned_cols=258  Identities=22%  Similarity=0.330  Sum_probs=201.6

Q ss_pred             HHHHHHHhhhhcccccCCCeEEEEEEEC--------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccc
Q 006019          365 SELEAACEDFSNVIGSSPIGTVYKGTLS--------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVN  435 (664)
Q Consensus       365 ~el~~~~~~~~~~iG~G~~G~Vy~g~~~--------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~  435 (664)
                      .++......+.+.||+|+||.||+++..        .+..+|+|.+....    .....+++.+|+++++++ +|+||++
T Consensus         7 ~~~~~~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~~E~~~l~~l~~h~~iv~   82 (334)
T cd05100           7 WELSRTRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDA----TDKDLSDLVSEMEMMKMIGKHKNIIN   82 (334)
T ss_pred             cccCHhHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEccccc----CHHHHHHHHHHHHHHHhhcCCCCeee
Confidence            3455555567789999999999999742        12368888775322    123456899999999999 7999999


Q ss_pred             eEEEEecCCCceeEEEEEecCCCChhhhhccc--------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEe
Q 006019          436 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIK--------------ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHN  501 (664)
Q Consensus       436 l~g~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~--------------~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHr  501 (664)
                      ++++|.+.+  ..++++||+++|+|.+++...              ....++|.++.+++.+++.||+|||+.+  ++||
T Consensus        83 ~~~~~~~~~--~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~g--ivH~  158 (334)
T cd05100          83 LLGACTQDG--PLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQK--CIHR  158 (334)
T ss_pred             eeEEEccCC--ceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCC--eecc
Confidence            999998876  579999999999999998642              1245889999999999999999999998  9999


Q ss_pred             CcCCCCeEecCCCceEecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCcc
Q 006019          502 YLNSSAVHLTEDYAAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYL  569 (664)
Q Consensus       502 DLk~~NILld~~~~~kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~  569 (664)
                      ||||+|||+++++.+||+|||+++.....           ...+.+||......++.++|||||||++|||++ |+.||.
T Consensus       159 dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~  238 (334)
T cd05100         159 DLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYP  238 (334)
T ss_pred             ccccceEEEcCCCcEEECCcccceecccccccccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCC
Confidence            99999999999999999999998754321           123567787777778899999999999999999 888884


Q ss_pred             CCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCCC
Q 006019          570 VDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPD  642 (664)
Q Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~~  642 (664)
                        .....++........ .         ...+.....++.+++.+||+.+|++||+|.|+++.|+++....+.
T Consensus       239 --~~~~~~~~~~~~~~~-~---------~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ell~~l~~~~~~~~~  299 (334)
T cd05100         239 --GIPVEELFKLLKEGH-R---------MDKPANCTHELYMIMRECWHAVPSQRPTFKQLVEDLDRVLTVTST  299 (334)
T ss_pred             --CCCHHHHHHHHHcCC-C---------CCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHhhhcCC
Confidence              233444443332221 1         011222345688999999999999999999999999999865543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=3.5e-35  Score=309.03  Aligned_cols=235  Identities=18%  Similarity=0.224  Sum_probs=187.3

Q ss_pred             cccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      +.||+|+||.||+++. .++..+|+|.+.......  ......+..|+++++.++||||+++.+++...+  ..++||||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~--~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~--~~~lv~E~   76 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVA--KDEVAHTLTENRVLQNSRHPFLTALKYSFQTHD--RLCFVMEY   76 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCC--EEEEEEeC
Confidence            3699999999999985 468899999987543221  233456788999999999999999999998776  67999999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEEeCcCCCCeEecCCCceEecccCchhhhh-----
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA-----  528 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~-~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~-----  528 (664)
                      +++|+|.+++..  ...+++.....++.+++.||+|||+ .+  |+||||||+|||++.++.+||+|||+++...     
T Consensus        77 ~~~~~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~lH~~~~--ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~  152 (325)
T cd05594          77 ANGGELFFHLSR--ERVFSEDRARFYGAEIVSALDYLHSEKN--VVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGAT  152 (325)
T ss_pred             CCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhcCC--EEecCCCCCeEEECCCCCEEEecCCCCeecCCCCcc
Confidence            999999988853  3468999999999999999999997 67  9999999999999999999999999986432     


Q ss_pred             ----hhhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          529 ----MAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       529 ----~~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                          .....+.+||......++.++|||||||++|||+||+.||..  ....+...........           ++...
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~--~~~~~~~~~i~~~~~~-----------~p~~~  219 (325)
T cd05594         153 MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYN--QDHEKLFELILMEEIR-----------FPRTL  219 (325)
T ss_pred             cccccCCcccCCHHHHccCCCCCccccccccceeeeeccCCCCCCC--CCHHHHHHHHhcCCCC-----------CCCCC
Confidence                123345678887777889999999999999999999999943  2223333322222111           12223


Q ss_pred             HHHHHHHHHHhccCCCCCCC-----CHHHHHH
Q 006019          605 LETLGELIKSCVRADPEKRP-----TMRDIAA  631 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RP-----s~~ev~~  631 (664)
                      ..++.+++.+||+.||++|+     ++.++++
T Consensus       220 ~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~  251 (325)
T cd05594         220 SPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQ  251 (325)
T ss_pred             CHHHHHHHHHHhhcCHHHhCCCCCCCHHHHhc
Confidence            35688999999999999996     8888874

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=100.00  E-value=1.9e-35  Score=305.47  Aligned_cols=246  Identities=18%  Similarity=0.309  Sum_probs=191.9

Q ss_pred             hhhcccccCCCeEEEEEEEC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCc
Q 006019          373 DFSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF  446 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  446 (664)
                      .+.+.||+|+||.||+|...      .+..||+|.+....    .......|.+|+.++++++|+||+++++++.+.+  
T Consensus         9 ~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--   82 (288)
T cd05061           9 TLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESA----SLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQ--   82 (288)
T ss_pred             eeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcC----CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCC--
Confidence            44588999999999999753      24578998765322    1223456889999999999999999999998776  


Q ss_pred             eeEEEEEecCCCChhhhhcccC--------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEe
Q 006019          447 TRMMVFEYAPNGTLFEHIHIKE--------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKL  518 (664)
Q Consensus       447 ~~~lV~Ey~~~GsL~~~l~~~~--------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl  518 (664)
                      ..++||||+++|+|.++++...        ...+++....+++.+++.||+|||+.+  ++||||||+||++++++.+|+
T Consensus        83 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~--i~H~dikp~nili~~~~~~~L  160 (288)
T cd05061          83 PTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKK--FVHRDLAARNCMVAHDFTVKI  160 (288)
T ss_pred             CcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCC--CcCCCCChheEEEcCCCcEEE
Confidence            5699999999999999986421        234577888999999999999999988  999999999999999999999


Q ss_pred             cccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCC
Q 006019          519 SDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGV  586 (664)
Q Consensus       519 ~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~  586 (664)
                      +|||+++.....           ...+.+||......++.++|||||||++|||++ |+.||..  ....++......+.
T Consensus       161 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~--~~~~~~~~~~~~~~  238 (288)
T cd05061         161 GDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQG--LSNEQVLKFVMDGG  238 (288)
T ss_pred             CcCCccccccccccccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHcCC
Confidence            999998754211           123556777777778999999999999999999 7888842  22333333222211


Q ss_pred             CCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          587 QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       587 ~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                                ....+...+..+.+++.+||+.+|++||++.++++.|++...
T Consensus       239 ----------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~~~  280 (288)
T cd05061         239 ----------YLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDLH  280 (288)
T ss_pred             ----------CCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHhhcC
Confidence                      111122334679999999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=100.00  E-value=1.2e-34  Score=301.58  Aligned_cols=245  Identities=22%  Similarity=0.347  Sum_probs=192.3

Q ss_pred             hhhcccccCCCeEEEEEEEC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCC
Q 006019          373 DFSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEP  445 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~  445 (664)
                      .+.+.||+|+||.||+|...      .+..+|+|.+.....    ....+.|.+|+++++++ +|+||+++++++...+ 
T Consensus        38 ~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~----~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~-  112 (302)
T cd05055          38 SFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAH----SSEREALMSELKIMSHLGNHENIVNLLGACTIGG-  112 (302)
T ss_pred             EEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCC----hHHHHHHHHHHHHHHhccCCCCcceEEEEEecCC-
Confidence            34589999999999999741      345788888754321    23346799999999999 7999999999998777 


Q ss_pred             ceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchh
Q 006019          446 FTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN  525 (664)
Q Consensus       446 ~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~  525 (664)
                       ..++||||+++|+|.++++......+++.++..++.+++.||+|||+.+  ++|+||||+|||++.++.+|++|||+++
T Consensus       113 -~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~--ivH~dlkp~Nil~~~~~~~~l~dfg~~~  189 (302)
T cd05055         113 -PILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKN--CIHRDLAARNVLLTHGKIVKICDFGLAR  189 (302)
T ss_pred             -ceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--eehhhhccceEEEcCCCeEEECCCcccc
Confidence             5799999999999999997544455899999999999999999999988  9999999999999999999999999987


Q ss_pred             hhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCcccc
Q 006019          526 EIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFV  593 (664)
Q Consensus       526 ~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (664)
                      .....           ...+.+||......++.++|||||||++|||+| |+.||.....  .+............    
T Consensus       190 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~--~~~~~~~~~~~~~~----  263 (302)
T cd05055         190 DIMNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPV--DSKFYKLIKEGYRM----  263 (302)
T ss_pred             cccCCCceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCc--hHHHHHHHHcCCcC----
Confidence            55321           123556787777778899999999999999998 9999843221  11111122111000    


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 006019          594 DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  636 (664)
Q Consensus       594 d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i  636 (664)
                           ..+.....++.+++.+||+.+|++||++.|+++.|+++
T Consensus       264 -----~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ell~~l~~~  301 (302)
T cd05055         264 -----AQPEHAPAEIYDIMKTCWDADPLKRPTFKQIVQLIGKQ  301 (302)
T ss_pred             -----CCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHhh
Confidence                 01112235689999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=100.00  E-value=6.8e-35  Score=299.60  Aligned_cols=242  Identities=22%  Similarity=0.312  Sum_probs=189.8

Q ss_pred             hhcccccCCCeEEEEEEECC------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCce
Q 006019          374 FSNVIGSSPIGTVYKGTLSN------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  447 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~------~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  447 (664)
                      +.+.||+|+||.||+|.+.+      +..|++|.+....    .......|.+|+.++++++|+||+++++++.+.+  .
T Consensus        10 ~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~----~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~   83 (277)
T cd05036          10 LLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESC----SEQDESDFLMEALIMSKFNHQNIVRLIGVSFERL--P   83 (277)
T ss_pred             eeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCC----CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCC--C
Confidence            34789999999999999753      5677888764322    1234567999999999999999999999998776  5


Q ss_pred             eEEEEEecCCCChhhhhcccC-----CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC---ceEec
Q 006019          448 RMMVFEYAPNGTLFEHIHIKE-----SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY---AAKLS  519 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~~-----~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~---~~kl~  519 (664)
                      .++||||+++|+|.++++...     ...++|..+.+++.+|+.|++|||+.+  ++||||||+||+++.++   .+||+
T Consensus        84 ~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~--ivH~dlkp~nil~~~~~~~~~~kl~  161 (277)
T cd05036          84 RFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENH--FIHRDIAARNCLLTCKGPGRVAKIA  161 (277)
T ss_pred             cEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--EeecccchheEEEeccCCCcceEec
Confidence            689999999999999986432     236899999999999999999999998  99999999999998764   69999


Q ss_pred             ccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCC
Q 006019          520 DLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ  587 (664)
Q Consensus       520 DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~  587 (664)
                      |||+++.....           ...+.+||......++.++|||||||++|||+| |+.||..  ....+........ .
T Consensus       162 dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~--~~~~~~~~~~~~~-~  238 (277)
T cd05036         162 DFGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPG--RTNQEVMEFVTGG-G  238 (277)
T ss_pred             cCccccccCCccceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCC--CCHHHHHHHHHcC-C
Confidence            99998765211           123567888777789999999999999999997 9999843  2223333222211 1


Q ss_pred             CCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHh
Q 006019          588 PLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  635 (664)
Q Consensus       588 ~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~  635 (664)
                      ..         ..+...+..+.+++.+||+.+|++||++.+|++.|++
T Consensus       239 ~~---------~~~~~~~~~~~~~i~~cl~~~p~~Rps~~~vl~~l~~  277 (277)
T cd05036         239 RL---------DPPKGCPGPVYRIMTDCWQHTPEDRPNFATILERIQY  277 (277)
T ss_pred             cC---------CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHhhC
Confidence            11         1122234578899999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.2e-35  Score=298.24  Aligned_cols=240  Identities=25%  Similarity=0.406  Sum_probs=194.3

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.+.||.|+||.||+|... |+.+++|.+.....      ..+++.+|+.++++++|+||+++++++....  ..++|||
T Consensus        10 ~~~~ig~g~~g~v~~~~~~-~~~v~iK~~~~~~~------~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~~v~e   80 (256)
T cd05039          10 LGATIGKGEFGDVMLGDYR-GQKVAVKCLKDDST------AAQAFLAEASVMTTLRHPNLVQLLGVVLQGN--PLYIVTE   80 (256)
T ss_pred             ceeeeecCCCceEEEEEec-CcEEEEEEeccchh------HHHHHHHHHHHHHhcCCcceeeeEEEEcCCC--CeEEEEE
Confidence            4588999999999999875 78899998864321      3567999999999999999999999998765  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      |+++++|.+++.......+++..+..++.+++.|+.|||+.+  ++||||||+||+++.++.+||+|||+++.....   
T Consensus        81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~--i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~~~  158 (256)
T cd05039          81 YMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKN--FVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQDS  158 (256)
T ss_pred             ecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--ccchhcccceEEEeCCCCEEEccccccccccccccc
Confidence            999999999997655557999999999999999999999998  999999999999999999999999998866322   


Q ss_pred             ---hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHH
Q 006019          531 ---EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE  606 (664)
Q Consensus       531 ---~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  606 (664)
                         ...+.+||......++.++||||||+++||+++ |+.||...  ...+.......+ ..      .   ..+...+.
T Consensus       159 ~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~--~~~~~~~~~~~~-~~------~---~~~~~~~~  226 (256)
T cd05039         159 GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI--PLKDVVPHVEKG-YR------M---EAPEGCPP  226 (256)
T ss_pred             CCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHhcC-CC------C---CCccCCCH
Confidence               123456887777778889999999999999998 99998432  222222221111 00      0   11122345


Q ss_pred             HHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 006019          607 TLGELIKSCVRADPEKRPTMRDIAAILREI  636 (664)
Q Consensus       607 ~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i  636 (664)
                      .+.+++.+||..+|++||+++|++++|+.+
T Consensus       227 ~~~~li~~~l~~~p~~Rp~~~~l~~~l~~~  256 (256)
T cd05039         227 EVYKVMKDCWELDPAKRPTFKQLREQLALI  256 (256)
T ss_pred             HHHHHHHHHhccChhhCcCHHHHHHHHhcC
Confidence            788999999999999999999999999764

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.6e-35  Score=309.86  Aligned_cols=237  Identities=19%  Similarity=0.293  Sum_probs=198.9

Q ss_pred             hcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      ++.||.|+-|.|-.|++ .+|+.+|||++......  .......+.+|+-+|+-+.|||+++++.++....  +.|+|.|
T Consensus        17 gkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~--s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~--~lylvlE   92 (786)
T KOG0588|consen   17 GKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSEL--SSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQ--HLYLVLE   92 (786)
T ss_pred             cccccCCCCceehhhhcccccceeEEEeecccccc--ccccccchhhhhHHHHHhcCCCeeeeeeeeccCc--eEEEEEE
Confidence            46799999999999995 57999999999765322  2234456889999999999999999999999877  7899999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|.|++++.  ..+.+......++..||..|+.|+|..+  |+||||||+|+|||.+.++||+|||+|..-..    
T Consensus        93 yv~gGELFdylv--~kG~l~e~eaa~ff~QIi~gv~yCH~~~--icHRDLKpENlLLd~~~nIKIADFGMAsLe~~gklL  168 (786)
T KOG0588|consen   93 YVPGGELFDYLV--RKGPLPEREAAHFFRQILDGVSYCHAFN--ICHRDLKPENLLLDVKNNIKIADFGMASLEVPGKLL  168 (786)
T ss_pred             ecCCchhHHHHH--hhCCCCCHHHHHHHHHHHHHHHHHhhhc--ceeccCCchhhhhhcccCEeeeccceeecccCCccc
Confidence            999999999996  4567888999999999999999999999  99999999999999999999999999876532    


Q ss_pred             ----hhhhcccccccCCCCC-CcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          530 ----AEMAATSKKLSSAPSA-SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       530 ----~~~~~~~pe~~~~~~~-s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                          +..+|.+||..++..| ..++||||.||||+-|+||+.||+  ++++......+..+...+           |...
T Consensus       169 eTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFd--DdNir~LLlKV~~G~f~M-----------Ps~I  235 (786)
T KOG0588|consen  169 ETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFD--DDNIRVLLLKVQRGVFEM-----------PSNI  235 (786)
T ss_pred             cccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCC--CccHHHHHHHHHcCcccC-----------CCcC
Confidence                2346677888776655 789999999999999999999994  556666655555553322           3334


Q ss_pred             HHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          605 LETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      +.++.+|+.+++..||+.|.|++||.+.
T Consensus       236 s~eaQdLLr~ml~VDp~~RiT~~eI~kH  263 (786)
T KOG0588|consen  236 SSEAQDLLRRMLDVDPSTRITTEEILKH  263 (786)
T ss_pred             CHHHHHHHHHHhccCccccccHHHHhhC
Confidence            4568899999999999999999999875

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=5.3e-35  Score=284.86  Aligned_cols=247  Identities=18%  Similarity=0.208  Sum_probs=189.5

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      +.|++|.||.||+|+.. ++..||+|+++....++.   ..-.-.+||.+|.+++|||||.+..+....+-...|+||||
T Consensus        82 nrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~G---FPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy~VMe~  158 (419)
T KOG0663|consen   82 NRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEG---FPITSLREINILLKARHPNIVEVKEVVVGSNMDKIYIVMEY  158 (419)
T ss_pred             hhcccCcceeEEEeccCCcceeEEeeecccccccCC---CcchhHHHHHHHHhcCCCCeeeeEEEEeccccceeeeeHHH
Confidence            78999999999999964 688999999987665442   22346789999999999999999988876655578999999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhhh---
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE---  531 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~~---  531 (664)
                      |+. +|...++. -...+......-++.|+++|++|||+..  |+|||||++|+|+...|.+||+|||+||.+....   
T Consensus       159 ~Eh-DLksl~d~-m~q~F~~~evK~L~~QlL~glk~lH~~w--ilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp~k~~  234 (419)
T KOG0663|consen  159 VEH-DLKSLMET-MKQPFLPGEVKTLMLQLLRGLKHLHDNW--ILHRDLKTSNLLLSHKGILKIADFGLAREYGSPLKPY  234 (419)
T ss_pred             HHh-hHHHHHHh-ccCCCchHHHHHHHHHHHHHHHHHhhce--eEecccchhheeeccCCcEEecccchhhhhcCCcccC
Confidence            988 89988864 3467888899999999999999999999  9999999999999999999999999999886442   


Q ss_pred             ------hhccccccc-CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCC-------
Q 006019          532 ------MAATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL-------  597 (664)
Q Consensus       532 ------~~~~~pe~~-~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-------  597 (664)
                            ..|.+||+. .++.+++..|+||+|||+.|+++++.-|.+ ...+.+.- .+....+...+-+.|.+       
T Consensus       235 T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G-~sE~dQl~-~If~llGtPte~iwpg~~~lp~~k  312 (419)
T KOG0663|consen  235 TPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPG-KSEIDQLD-KIFKLLGTPSEAIWPGYSELPAVK  312 (419)
T ss_pred             cceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCC-CchHHHHH-HHHHHhCCCccccCCCccccchhh
Confidence                  344567754 456689999999999999999999877743 22332221 11111111111111111       


Q ss_pred             ----CCCC---------HH-HHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          598 ----SSFD---------EE-QLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       598 ----~~~~---------~~-~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                          ...+         .. ..+.-++++...+..||.+|-|+.|.++
T Consensus       313 ~~~f~~~pyn~lr~kF~~~~lse~g~~Lln~llt~dP~kR~tA~~~L~  360 (419)
T KOG0663|consen  313 KMTFSEHPYNNLRKKFGALSLSEQGFDLLNKLLTYDPGKRITAEDGLK  360 (419)
T ss_pred             ccccCCCCchhhhhhccccccchhHHHHHHHHhccCccccccHHHhhc
Confidence                1111         11 2356789999999999999999998775

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=5.5e-35  Score=301.45  Aligned_cols=246  Identities=20%  Similarity=0.285  Sum_probs=190.7

Q ss_pred             hhcccccCCCeEEEEEEE-----CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          374 FSNVIGSSPIGTVYKGTL-----SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-----~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      ..+.||+|+||.||++++     .++..+|+|.+.....    ......|.+|++++++++|+||+++.+++...+....
T Consensus         8 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (284)
T cd05079           8 RIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESG----GNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI   83 (284)
T ss_pred             hceecCCCCceeEEEEEEccCCCCccceEEEEEcCcccc----HHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCce
Confidence            347899999999999985     2478899998754321    2345679999999999999999999999987643357


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++||||+++++|.+++... ...++|..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++...
T Consensus        84 ~lv~e~~~g~~L~~~l~~~-~~~~~~~~~~~i~~~i~~aL~~lH~~g--i~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~  160 (284)
T cd05079          84 KLIMEFLPSGSLKEYLPRN-KNKINLKQQLKYAVQICKGMDYLGSRQ--YVHRDLAARNVLVESEHQVKIGDFGLTKAIE  160 (284)
T ss_pred             EEEEEccCCCCHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHCC--eeecccchheEEEcCCCCEEECCCccccccc
Confidence            8999999999999998633 346899999999999999999999998  9999999999999999999999999987653


Q ss_pred             hhh------------hhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCC-------------ChHHHHHHHh
Q 006019          529 MAE------------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG-------------SLEDWAADYL  583 (664)
Q Consensus       529 ~~~------------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~-------------~~~~~~~~~~  583 (664)
                      ...            ..+.+||......++.++|||||||++|||+|++.|......             ....+.. ..
T Consensus       161 ~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  239 (284)
T cd05079         161 TDKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLVR-VL  239 (284)
T ss_pred             cCccceeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCccccchhhhhcccccccccHHHHHH-HH
Confidence            211            124567776667788999999999999999998776421110             0011111 11


Q ss_pred             cCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 006019          584 SGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  636 (664)
Q Consensus       584 ~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i  636 (664)
                      ..         ......+...+..+.+++.+||+.+|++||++.++++.|+++
T Consensus       240 ~~---------~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~~~  283 (284)
T cd05079         240 EE---------GKRLPRPPNCPEEVYQLMRKCWEFQPSKRTTFQNLIEGFEAI  283 (284)
T ss_pred             Hc---------CccCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHHhh
Confidence            11         000111223446799999999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=100.00  E-value=2.8e-35  Score=303.05  Aligned_cols=241  Identities=22%  Similarity=0.372  Sum_probs=189.3

Q ss_pred             hhcccccCCCeEEEEEEEC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCce
Q 006019          374 FSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  447 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  447 (664)
                      +.++||+|+||.||++...      ++..+++|.+....     ......|.+|++++++++|+||+++++++....  .
T Consensus         9 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~-----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~   81 (280)
T cd05092           9 LKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEAS-----ESARQDFQREAELLTVLQHQHIVRFYGVCTEGR--P   81 (280)
T ss_pred             eccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCC-----HHHHHHHHHHHHHHhcCCCCCCceEEEEEecCC--c
Confidence            3578999999999999742      35678888764322     334568999999999999999999999998776  5


Q ss_pred             eEEEEEecCCCChhhhhcccCC-------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC
Q 006019          448 RMMVFEYAPNGTLFEHIHIKES-------------EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY  514 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~~~-------------~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~  514 (664)
                      .++++||+++|+|.++++....             ..+++..+..++.+++.|++|||+.+  ++||||||+|||+++++
T Consensus        82 ~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~~--i~H~dlkp~nil~~~~~  159 (280)
T cd05092          82 LLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASLH--FVHRDLATRNCLVGQGL  159 (280)
T ss_pred             eEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHCC--eecccccHhhEEEcCCC
Confidence            6999999999999999864321             35899999999999999999999998  99999999999999999


Q ss_pred             ceEecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHH
Q 006019          515 AAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADY  582 (664)
Q Consensus       515 ~~kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~  582 (664)
                      .+||+|||+++.....           ...+.+||......++.++|||||||++|||+| |+.||...  ...+.....
T Consensus       160 ~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~--~~~~~~~~~  237 (280)
T cd05092         160 VVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQL--SNTEAIECI  237 (280)
T ss_pred             CEEECCCCceeEcCCCceeecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccC--CHHHHHHHH
Confidence            9999999998644211           123567887777778999999999999999999 89998422  222222222


Q ss_pred             hcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHh
Q 006019          583 LSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  635 (664)
Q Consensus       583 ~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~  635 (664)
                      ..... .         ..+..++..+.+++.+||+.||++||++.||.+.|++
T Consensus       238 ~~~~~-~---------~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~l~~~l~~  280 (280)
T cd05092         238 TQGRE-L---------ERPRTCPPEVYAIMQGCWQREPQQRMVIKDIHSRLQA  280 (280)
T ss_pred             HcCcc-C---------CCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHhC
Confidence            22111 0         1112233568899999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=1.1e-34  Score=298.66  Aligned_cols=248  Identities=19%  Similarity=0.324  Sum_probs=193.6

Q ss_pred             hhcccccCCCeEEEEEEEC-----CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          374 FSNVIGSSPIGTVYKGTLS-----NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-----~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      +.+.||+|+||.||+|++.     ++..+|||.+......    ...++|.+|++++++++|+||+++++++...+....
T Consensus         8 ~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~----~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~   83 (284)
T cd05038           8 FIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEE----QHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSL   83 (284)
T ss_pred             hheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccch----HHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCce
Confidence            4578999999999999964     3678999988643321    345789999999999999999999999977443367


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++||||+++|+|.++++.. ...+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||++....
T Consensus        84 ~lv~e~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~l~~aL~~lH~~~--i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  160 (284)
T cd05038          84 RLIMEYLPSGSLRDYLQRH-RDQINLKRLLLFSSQICKGMDYLGSQR--YIHRDLAARNILVESEDLVKISDFGLAKVLP  160 (284)
T ss_pred             EEEEecCCCCCHHHHHHhC-ccccCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHhEEEcCCCCEEEcccccccccc
Confidence            9999999999999999643 336999999999999999999999998  9999999999999999999999999988764


Q ss_pred             hh------------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChH------------HHHHHHhc
Q 006019          529 MA------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLE------------DWAADYLS  584 (664)
Q Consensus       529 ~~------------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~------------~~~~~~~~  584 (664)
                      ..            ...+.+||......++.++||||||+++|||+||+.|+........            ......+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (284)
T cd05038         161 EDKDYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLK  240 (284)
T ss_pred             cCCcceeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcccccchhccccccccccccHHHHHHHHH
Confidence            21            1123457766666788999999999999999999999743211110            00111111


Q ss_pred             CCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhh
Q 006019          585 GVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  637 (664)
Q Consensus       585 ~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~  637 (664)
                      ...         ....+..++.++.+++.+||+.+|++||+|.||+++|+++.
T Consensus       241 ~~~---------~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~i~  284 (284)
T cd05038         241 EGE---------RLPRPPSCPDEVYDLMKLCWEAEPQDRPSFADLILIVDRLR  284 (284)
T ss_pred             cCC---------cCCCCccCCHHHHHHHHHHhccChhhCCCHHHHHHHHhhcC
Confidence            100         01112234467899999999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=100.00  E-value=6.1e-35  Score=301.66  Aligned_cols=242  Identities=22%  Similarity=0.361  Sum_probs=191.5

Q ss_pred             hhcccccCCCeEEEEEEEC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCce
Q 006019          374 FSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  447 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  447 (664)
                      +.+.||+|+||.||+|...      ++..+|+|.+....    .....++|.+|++++++++||||+++++++....  .
T Consensus         9 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~----~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~--~   82 (288)
T cd05050           9 YVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA----SADMQADFQREAALMAEFDHPNIVKLLGVCAVGK--P   82 (288)
T ss_pred             ecccccccccccEEEEEEcccCCCCcceeEEEEecCCCc----CHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCC--c
Confidence            3478999999999999863      46788999875322    1234567999999999999999999999998776  5


Q ss_pred             eEEEEEecCCCChhhhhcccC--------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCC
Q 006019          448 RMMVFEYAPNGTLFEHIHIKE--------------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSA  507 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~~--------------------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~N  507 (664)
                      .++|+||+++|+|.++++...                    ...+++..++.++.+++.||+|||+.+  ++||||||+|
T Consensus        83 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~~--i~H~dl~p~n  160 (288)
T cd05050          83 MCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERK--FVHRDLATRN  160 (288)
T ss_pred             cEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCC--eecccccHhh
Confidence            699999999999999986321                    134788999999999999999999988  9999999999


Q ss_pred             eEecCCCceEecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCCh
Q 006019          508 VHLTEDYAAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSL  575 (664)
Q Consensus       508 ILld~~~~~kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~  575 (664)
                      |++++++.+||+|||+++.....           ...+.+||......++.++|||||||++|||++ |..||.  ....
T Consensus       161 il~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~--~~~~  238 (288)
T cd05050         161 CLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYY--GMAH  238 (288)
T ss_pred             eEecCCCceEECccccceecccCccccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCC--CCCH
Confidence            99999999999999998754211           123556777777778999999999999999998 888883  2233


Q ss_pred             HHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHh
Q 006019          576 EDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  635 (664)
Q Consensus       576 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~  635 (664)
                      .++......+ .         ....+...+.++.+++.+||+.+|++||++.|+++.|++
T Consensus       239 ~~~~~~~~~~-~---------~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~el~~~l~~  288 (288)
T cd05050         239 EEVIYYVRDG-N---------VLSCPDNCPLELYNLMRLCWSKLPSDRPSFASINRILQR  288 (288)
T ss_pred             HHHHHHHhcC-C---------CCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHhhC
Confidence            3443333221 1         111122334678999999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=7.9e-35  Score=298.70  Aligned_cols=233  Identities=20%  Similarity=0.337  Sum_probs=177.2

Q ss_pred             ccccCCCeEEEEEEECC-------------------------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCC
Q 006019          377 VIGSSPIGTVYKGTLSN-------------------------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK  431 (664)
Q Consensus       377 ~iG~G~~G~Vy~g~~~~-------------------------~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~  431 (664)
                      .||+|+||.||+|.+..                         ...|++|.+....     .....+|.+|++++++++||
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~-----~~~~~~~~~~~~~~~~l~h~   76 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSH-----RDIALAFFETASLMSQVSHI   76 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHH-----HHHHHHHHHHHHHHhcCCCC
Confidence            59999999999998521                         1346777764321     23456789999999999999


Q ss_pred             cccceEEEEecCCCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEec
Q 006019          432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT  511 (664)
Q Consensus       432 niv~l~g~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld  511 (664)
                      ||++++|+|.+..  ..++||||+++|+|..+++. ....+++..+.+++.|+++||+|||+.+  |+||||||+|||++
T Consensus        77 niv~~~~~~~~~~--~~~lv~ey~~~g~L~~~l~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~~--iiH~dlkp~Nill~  151 (274)
T cd05076          77 HLAFVHGVCVRGS--ENIMVEEFVEHGPLDVCLRK-EKGRVPVAWKITVAQQLASALSYLEDKN--LVHGNVCAKNILLA  151 (274)
T ss_pred             CeeeEEEEEEeCC--ceEEEEecCCCCcHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHcCC--ccCCCCCcccEEEe
Confidence            9999999998876  67999999999999988863 3456899999999999999999999988  99999999999998


Q ss_pred             CCC-------ceEecccCchhhhhh-----hhhhcccccccCC-CCCCcCCcchhhHHHHHHHH-hCCCCccCCCCChHH
Q 006019          512 EDY-------AAKLSDLSFWNEIAM-----AEMAATSKKLSSA-PSASLESNVYNFGVLLFEMV-TGRLPYLVDNGSLED  577 (664)
Q Consensus       512 ~~~-------~~kl~DfGla~~~~~-----~~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~-tG~~P~~~~~~~~~~  577 (664)
                      .++       .+|++|||++.....     ....+.+||.... ..++.++|||||||++||++ +|+.||.........
T Consensus       152 ~~~~~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~  231 (274)
T cd05076         152 RLGLAEGTSPFIKLSDPGVSFTALSREERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTPSEKE  231 (274)
T ss_pred             ccCcccCccceeeecCCccccccccccccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCccccChHHHH
Confidence            654       379999998764321     1234556776543 56789999999999999995 699998532211111


Q ss_pred             HHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 006019          578 WAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL  633 (664)
Q Consensus       578 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L  633 (664)
                         .........           +......+.+++.+||+.+|++||+|.+|++.|
T Consensus       232 ---~~~~~~~~~-----------~~~~~~~~~~li~~cl~~~p~~Rps~~~il~~L  273 (274)
T cd05076         232 ---RFYEKKHRL-----------PEPSCKELATLISQCLTYEPTQRPSFRTILRDL  273 (274)
T ss_pred             ---HHHHhccCC-----------CCCCChHHHHHHHHHcccChhhCcCHHHHHHhh
Confidence               111110000           111123588999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=100.00  E-value=2.2e-34  Score=293.01  Aligned_cols=243  Identities=25%  Similarity=0.369  Sum_probs=187.1

Q ss_pred             cccccCCCeEEEEEEEC----CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          376 NVIGSSPIGTVYKGTLS----NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~----~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.||+|+||.||+|.+.    ++..+|+|.+....    .....+.|.+|+.+++.++||||+++++++...+. ..++|
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~----~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~-~~~lv   75 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRIT----DLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEG-SPLVV   75 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccC----CHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCC-CcEEE
Confidence            46999999999999863    23578888764321    12345678999999999999999999998865432 46899


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh-
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  530 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~-  530 (664)
                      +||+++|+|.++++.. ...+.+..+..++.+++.|++|||+.+  ++||||||+|||+++++.+||+|||+++..... 
T Consensus        76 ~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~  152 (262)
T cd05058          76 LPYMKHGDLRNFIRSE-THNPTVKDLIGFGLQVAKGMEYLASKK--FVHRDLAARNCMLDESFTVKVADFGLARDIYDKE  152 (262)
T ss_pred             EecCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhCC--ccccccCcceEEEcCCCcEEECCccccccccCCc
Confidence            9999999999998643 345778888999999999999999988  999999999999999999999999998754211 


Q ss_pred             ------------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhC-CCCccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 006019          531 ------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTG-RLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  597 (664)
Q Consensus       531 ------------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG-~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  597 (664)
                                  ...+.+||......++.++|||||||++|||+|| ..||.  .....+.......+.. .        
T Consensus       153 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~--~~~~~~~~~~~~~~~~-~--------  221 (262)
T cd05058         153 YYSVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYP--DVDSFDITVYLLQGRR-L--------  221 (262)
T ss_pred             ceeecccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCC--CCCHHHHHHHHhcCCC-C--------
Confidence                        1234567777677789999999999999999995 55553  2223333333222211 0        


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          598 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       598 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                       ..+...+..+.+++.+||+.+|++||++.+|++.|+++..
T Consensus       222 -~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~il~~l~~~~~  261 (262)
T cd05058         222 -LQPEYCPDPLYEVMLSCWHPKPEMRPTFSELVSRIEQIFS  261 (262)
T ss_pred             -CCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHhc
Confidence             1112223568899999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=100.00  E-value=2.1e-34  Score=294.58  Aligned_cols=243  Identities=22%  Similarity=0.343  Sum_probs=181.2

Q ss_pred             cccccCCCeEEEEEEECC---CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          376 NVIGSSPIGTVYKGTLSN---GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~---~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.||+|+||.||+|.+.+   +..+++|.+.....    ......|.+|+.++++++||||++++|++.+..  ..++||
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~----~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~   74 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSAS----VQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVT--PYLLVM   74 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCCC----hHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCC--CcEEEE
Confidence            359999999999998653   35688887754321    233457999999999999999999999998766  569999


Q ss_pred             EecCCCChhhhhcccC---CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          453 EYAPNGTLFEHIHIKE---SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~---~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                      ||+++|+|.++++...   ....++..+.+++.+++.|++|||+.+  ++||||||+||+++.++.+|++|||+++....
T Consensus        75 e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~--i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~  152 (269)
T cd05087          75 EFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKNN--FIHSDLALRNCLLTADLTVKIGDYGLSHNKYK  152 (269)
T ss_pred             ECCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCC--EeccccCcceEEEcCCCcEEECCccccccccC
Confidence            9999999999986432   235678888899999999999999998  99999999999999999999999999865422


Q ss_pred             h-----------hhhcccccccCC-------CCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCc
Q 006019          530 A-----------EMAATSKKLSSA-------PSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQ  590 (664)
Q Consensus       530 ~-----------~~~~~~pe~~~~-------~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~  590 (664)
                      .           ...+.+||+...       ..++.++||||||+++|||++ |+.||....  ..+........  ...
T Consensus       153 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~--~~~~~~~~~~~--~~~  228 (269)
T cd05087         153 EDYYVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLS--DEQVLTYTVRE--QQL  228 (269)
T ss_pred             cceeecCCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCC--hHHHHHHHhhc--ccC
Confidence            1           123456776532       135789999999999999997 999994321  11111111111  111


Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 006019          591 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR  634 (664)
Q Consensus       591 ~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~  634 (664)
                      ...++....   .....+.+++.+|| .+|++||+++||++.|+
T Consensus       229 ~~~~~~~~~---~~~~~~~~l~~~c~-~~P~~Rpt~~~l~~~l~  268 (269)
T cd05087         229 KLPKPRLKL---PLSDRWYEVMQFCW-LQPEQRPSAEEVHLLLS  268 (269)
T ss_pred             CCCCCccCC---CCChHHHHHHHHHh-cCcccCCCHHHHHHHhc
Confidence            122222211   12245788999999 68999999999998874

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=3.9e-35  Score=291.21  Aligned_cols=241  Identities=23%  Similarity=0.372  Sum_probs=197.9

Q ss_pred             HhhhhcccccCCCeEEEEEE-ECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeE
Q 006019          371 CEDFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  449 (664)
Q Consensus       371 ~~~~~~~iG~G~~G~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~  449 (664)
                      .++|.+.||+|.||+|-+|. ...|+.||||.++....++  ......+++|+++|+.++||||+.++.++...+  ...
T Consensus        54 RyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkd--eqDlvhIRREIeIMSsLNHPhII~IyEVFENkd--KIv  129 (668)
T KOG0611|consen   54 RYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKD--EQDLVHIRREIEIMSSLNHPHIIQIYEVFENKD--KIV  129 (668)
T ss_pred             HHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhccc--HHHHHHHHHHHHHHhhcCCCceeehhhhhcCCc--eEE
Confidence            34566789999999999998 4679999999998766655  334456899999999999999999999998877  679


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                      |||||..+|.|+|++.  +...|+......+.+||..|+.|+|..+  ++|||||-+|||||.|+++||+|||++..+..
T Consensus       130 ivMEYaS~GeLYDYiS--er~~LsErEaRhfFRQIvSAVhYCHknr--VvHRDLKLENILLD~N~NiKIADFGLSNly~~  205 (668)
T KOG0611|consen  130 IVMEYASGGELYDYIS--ERGSLSEREARHFFRQIVSAVHYCHKNR--VVHRDLKLENILLDQNNNIKIADFGLSNLYAD  205 (668)
T ss_pred             EEEEecCCccHHHHHH--HhccccHHHHHHHHHHHHHHHHHHhhcc--ceecccchhheeecCCCCeeeeccchhhhhcc
Confidence            9999999999999996  5567999999999999999999999999  99999999999999999999999999987753


Q ss_pred             hh--------hhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 006019          530 AE--------MAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  600 (664)
Q Consensus       530 ~~--------~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  600 (664)
                      ..        ..+.+||...+ +.-..+.|-||+||+||.|+.|..||+  +.+....++++..+..     ..|     
T Consensus       206 ~kfLqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFD--G~Dhk~lvrQIs~GaY-----rEP-----  273 (668)
T KOG0611|consen  206 KKFLQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFD--GRDHKRLVRQISRGAY-----REP-----  273 (668)
T ss_pred             ccHHHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccC--CchHHHHHHHhhcccc-----cCC-----
Confidence            32        23445665544 444788999999999999999999994  4445555665554421     111     


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 006019          601 DEEQLETLGELIKSCVRADPEKRPTMRDIAAIL  633 (664)
Q Consensus       601 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L  633 (664)
                        +.+....-|+++++..+|++|-|..||....
T Consensus       274 --~~PSdA~gLIRwmLmVNP~RRATieDiAsHW  304 (668)
T KOG0611|consen  274 --ETPSDASGLIRWMLMVNPERRATIEDIASHW  304 (668)
T ss_pred             --CCCchHHHHHHHHHhcCcccchhHHHHhhhh
Confidence              1223467899999999999999999998754

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=100.00  E-value=4.8e-35  Score=306.44  Aligned_cols=251  Identities=22%  Similarity=0.344  Sum_probs=196.0

Q ss_pred             hhhhcccccCCCeEEEEEEEC--------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEec
Q 006019          372 EDFSNVIGSSPIGTVYKGTLS--------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEE  442 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~~--------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~  442 (664)
                      ..+.+.||+|+||.||+++..        ....+|+|.+.....    .....++.+|+++++++ +||||++++++|..
T Consensus        14 ~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~----~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~   89 (314)
T cd05099          14 LVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNAT----DKDLADLISEMELMKLIGKHKNIINLLGVCTQ   89 (314)
T ss_pred             eeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCC----hHHHHHHHHHHHHHHhccCCCCeeeEEEEEcc
Confidence            345689999999999999742        245688888753221    23456789999999999 69999999999987


Q ss_pred             CCCceeEEEEEecCCCChhhhhcccC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCe
Q 006019          443 EEPFTRMMVFEYAPNGTLFEHIHIKE--------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAV  508 (664)
Q Consensus       443 ~~~~~~~lV~Ey~~~GsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NI  508 (664)
                      .+  ..++|+||+++|+|.+++....              ...++|....+++.+++.||+|||+.+  ++||||||+||
T Consensus        90 ~~--~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~g--i~H~dlkp~Ni  165 (314)
T cd05099          90 EG--PLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRR--CIHRDLAARNV  165 (314)
T ss_pred             CC--ceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHCC--eeeccccceeE
Confidence            66  5799999999999999986421              245899999999999999999999988  99999999999


Q ss_pred             EecCCCceEecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChH
Q 006019          509 HLTEDYAAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLE  576 (664)
Q Consensus       509 Lld~~~~~kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~  576 (664)
                      |+++++.+||+|||+++.....           ...+.+||......++.++|||||||++|||+| |+.||..  ....
T Consensus       166 ll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~--~~~~  243 (314)
T cd05099         166 LVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPG--IPVE  243 (314)
T ss_pred             EEcCCCcEEEccccccccccccccccccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCC--CCHH
Confidence            9999999999999999765321           123567887777778999999999999999999 8999842  2222


Q ss_pred             HHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCCC
Q 006019          577 DWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPD  642 (664)
Q Consensus       577 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~~  642 (664)
                      +........ ..         ...+..++.++.+++.+||+.+|++||++.++++.|+++.....+
T Consensus       244 ~~~~~~~~~-~~---------~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~ll~~l~~~~~~~~~  299 (314)
T cd05099         244 ELFKLLREG-HR---------MDKPSNCTHELYMLMRECWHAVPTQRPTFKQLVEALDKVLAAVSE  299 (314)
T ss_pred             HHHHHHHcC-CC---------CCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHHhcC
Confidence            322222211 11         111223345688999999999999999999999999999764433

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=8.1e-35  Score=300.56  Aligned_cols=247  Identities=15%  Similarity=0.193  Sum_probs=186.5

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. ++..+|+|++......   ....+.+.+|++++++++|+||+++++++...+  ..++||
T Consensus         5 ~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~   79 (287)
T cd07848           5 VLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEEN---EEVKETTLRELKMLRTLKQENIVELKEAFRRRG--KLYLVF   79 (287)
T ss_pred             EEEEecccCCEEEEEEEECCCCcEEEEEEEeccccc---ccchhhHHHHHHHHHhCCCccccchhhhEecCC--EEEEEE
Confidence            4478999999999999975 5788999998654322   233467889999999999999999999998776  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||++++.+..+..  ....+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++....   
T Consensus        80 e~~~~~~l~~~~~--~~~~~~~~~~~~~~~qi~~~L~~lH~~~--i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~  155 (287)
T cd07848          80 EYVEKNMLELLEE--MPNGVPPEKVRSYIYQLIKAIHWCHKND--IVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSN  155 (287)
T ss_pred             ecCCCCHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEEcCCCcEEEeeccCccccccccc
Confidence            9999887765443  2356899999999999999999999998  99999999999999999999999999876532   


Q ss_pred             -------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHH--------------HHHhcCCCC
Q 006019          530 -------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWA--------------ADYLSGVQP  588 (664)
Q Consensus       530 -------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~--------------~~~~~~~~~  588 (664)
                             ....+.+||......++.++|||||||++|||++|+.||..... .....              ...... ..
T Consensus       156 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~  233 (287)
T cd07848         156 ANYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESE-IDQLFTIQKVLGPLPAEQMKLFYSN-PR  233 (287)
T ss_pred             ccccccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHhhCCCCHHHHHhhhcc-ch
Confidence                   12335678877777789999999999999999999999953221 11110              000000 00


Q ss_pred             CccccCCCCC-------CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          589 LQQFVDPTLS-------SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       589 ~~~~~d~~~~-------~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ......+...       ......+..+.+++.+|++.||++||+++++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~  283 (287)
T cd07848         234 FHGLRFPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLN  283 (287)
T ss_pred             hcccccCcccCcccHHHhhhcccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            0000000000       001123456899999999999999999998875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=9.6e-35  Score=305.11  Aligned_cols=235  Identities=17%  Similarity=0.211  Sum_probs=185.8

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeEEEEE
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.||+|+||.||+|+.. ++..+|+|++.......  ....+.+..|.+++..+ +||||+++++++...+  ..++|||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~--~~~lv~E   76 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQ--DDDVDCTMTEKRILALAAKHPFLTALHCCFQTKD--RLFFVME   76 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhh--hhHHHHHHHHHHHHHhccCCCCccceeeEEEcCC--eEEEEEe
Confidence            36999999999999975 47899999987543211  22345678899998876 7999999999998877  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|+|.+++.  ....+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....    
T Consensus        77 ~~~~~~L~~~l~--~~~~~~~~~~~~~~~qi~~aL~~LH~~~--ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~  152 (321)
T cd05591          77 YVNGGDLMFQIQ--RSRKFDEPRSRFYAAEVTLALMFLHRHG--VIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVT  152 (321)
T ss_pred             CCCCCcHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCCHHHeEECCCCCEEEeecccceecccCCcc
Confidence            999999998885  3356899999999999999999999998  99999999999999999999999999875321    


Q ss_pred             -----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          530 -----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       530 -----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                           ....+.+||......++.++|||||||++|||+||+.||..  ....+.......+...           .+...
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~--~~~~~~~~~i~~~~~~-----------~p~~~  219 (321)
T cd05591         153 TTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEA--DNEDDLFESILHDDVL-----------YPVWL  219 (321)
T ss_pred             ccccccCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCC--CCHHHHHHHHHcCCCC-----------CCCCC
Confidence                 12345678887777889999999999999999999999943  2333333333332111           11122


Q ss_pred             HHHHHHHHHHhccCCCCCCC-------CHHHHHH
Q 006019          605 LETLGELIKSCVRADPEKRP-------TMRDIAA  631 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RP-------s~~ev~~  631 (664)
                      ..++.+++.+|++.||++||       ++.++++
T Consensus       220 ~~~~~~ll~~~L~~dp~~R~~~~~~~~~~~~~~~  253 (321)
T cd05591         220 SKEAVSILKAFMTKNPNKRLGCVASQGGEDAIKQ  253 (321)
T ss_pred             CHHHHHHHHHHhccCHHHcCCCCCCCCCHHHHhc
Confidence            35688999999999999999       6666654

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=1.1e-34  Score=305.46  Aligned_cols=233  Identities=20%  Similarity=0.243  Sum_probs=182.8

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeEEEEE
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.||+|+||.||+|+.. +++.+|+|.+.......  ......+..|+.++.++ +||||+++++++...+  ..++|||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~--~~~lv~E   76 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVND--DEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTES--RLFFVIE   76 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcc--hhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCC--EEEEEEe
Confidence            46999999999999965 57899999987543222  22345678899988876 8999999999998877  7799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|+|.+++..  ...+++..+..++.+++.||+|||+++  |+||||||+||+++.++.+||+|||+++....    
T Consensus        77 ~~~~~~L~~~~~~--~~~l~~~~~~~i~~qi~~~l~~lH~~~--ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~~~  152 (329)
T cd05618          77 YVNGGDLMFHMQR--QRKLPEEHARFYSAEISLALNYLHERG--IIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDT  152 (329)
T ss_pred             CCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eeeCCCCHHHEEECCCCCEEEeeCCccccccCCCCc
Confidence            9999999888753  356899999999999999999999998  99999999999999999999999999875311    


Q ss_pred             -----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCC------CCChHHHHHHHhcCCCCCccccCCCCC
Q 006019          530 -----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVD------NGSLEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       530 -----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~------~~~~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                           ....+.+||......++.++|||||||++|||+||+.||...      .....++.........          .
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~----------~  222 (329)
T cd05618         153 TSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQ----------I  222 (329)
T ss_pred             cccccCCccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHHHhcCC----------C
Confidence                 123456788887788899999999999999999999999421      1112223222221110          1


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCH
Q 006019          599 SFDEEQLETLGELIKSCVRADPEKRPTM  626 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~  626 (664)
                      ..+......+.+++.+||+.||++||++
T Consensus       223 ~~p~~~~~~~~~ll~~~L~~dP~~R~~~  250 (329)
T cd05618         223 RIPRSLSVKAASVLKSFLNKDPKERLGC  250 (329)
T ss_pred             CCCCCCCHHHHHHHHHHhcCCHHHcCCC
Confidence            1222334568899999999999999983

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=1.3e-34  Score=319.85  Aligned_cols=238  Identities=17%  Similarity=0.272  Sum_probs=189.1

Q ss_pred             hhhcccccCCCeEEEEEEEC-C-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLS-N-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  450 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~-~-~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~l  450 (664)
                      .+.+.||+|+||.||+|... + +..|++|.+....     ......+.+|+++++.++|||||++++++...+  ..++
T Consensus        70 ~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~-----~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~--~~~l  142 (478)
T PTZ00267         70 VLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLND-----ERQAAYARSELHCLAACDHFGIVKHFDDFKSDD--KLLL  142 (478)
T ss_pred             EEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCC-----HHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECC--EEEE
Confidence            34588999999999999854 3 5678887654321     233456888999999999999999999998877  7899


Q ss_pred             EEEecCCCChhhhhccc--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          451 VFEYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ||||+++|+|.++++..  ....+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...
T Consensus       143 v~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~--ivHrDlkp~NIll~~~~~~kL~DFgla~~~~  220 (478)
T PTZ00267        143 IMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRK--MMHRDLKSANIFLMPTGIIKLGDFGFSKQYS  220 (478)
T ss_pred             EEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCC--EEECCcCHHhEEECCCCcEEEEeCcCceecC
Confidence            99999999999887532  3456889999999999999999999988  9999999999999999999999999988653


Q ss_pred             h-----------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 006019          529 M-----------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  597 (664)
Q Consensus       529 ~-----------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  597 (664)
                      .           ....+.+||......++.++|||||||++|||+||+.||..  ....+.......+..          
T Consensus       221 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~--~~~~~~~~~~~~~~~----------  288 (478)
T PTZ00267        221 DSVSLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKG--PSQREIMQQVLYGKY----------  288 (478)
T ss_pred             CccccccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHHhCCC----------
Confidence            2           12335678887777889999999999999999999999942  233333333332211          


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          598 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       598 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ...+......+.+++.+||+.+|++||++.+++.
T Consensus       289 ~~~~~~~s~~~~~li~~~L~~dP~~Rps~~~~l~  322 (478)
T PTZ00267        289 DPFPCPVSSGMKALLDPLLSKNPALRPTTQQLLH  322 (478)
T ss_pred             CCCCccCCHHHHHHHHHHhccChhhCcCHHHHHh
Confidence            0112223356889999999999999999999864

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=6.2e-35  Score=300.49  Aligned_cols=237  Identities=19%  Similarity=0.218  Sum_probs=185.2

Q ss_pred             cccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEecC
Q 006019          378 IGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAP  456 (664)
Q Consensus       378 iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey~~  456 (664)
                      ||+|+||+||++... +++.+|+|.+.......  ....+.+..|++++++++|+||+++.+++....  ..++||||++
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~--~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~--~~~lv~e~~~   76 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKK--RKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKT--DLCLVMTIMN   76 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhh--hHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCC--eEEEEEeCCC
Confidence            799999999999864 68899999986543221  122356788999999999999999999988766  6799999999


Q ss_pred             CCChhhhhccc--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh----
Q 006019          457 NGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA----  530 (664)
Q Consensus       457 ~GsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~----  530 (664)
                      +|+|.+++...  ....+++..+..++.|++.||+|||+.+  |+||||||+||+++.++.+||+|||+++.....    
T Consensus        77 ~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~  154 (280)
T cd05608          77 GGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQRR--IIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSKT  154 (280)
T ss_pred             CCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEECCCCCEEEeeCccceecCCCCccc
Confidence            99998877432  3456899999999999999999999998  999999999999999999999999998754321    


Q ss_pred             -----hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCC--hHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          531 -----EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGS--LEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       531 -----~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                           ...+.+||......++.++|||||||++|||+||+.||......  ..+........          . ...+..
T Consensus       155 ~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~----------~-~~~~~~  223 (280)
T cd05608         155 KGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRILND----------S-VTYPDK  223 (280)
T ss_pred             cccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcchhHHHHHHhhccc----------C-CCCccc
Confidence                 23456788887788899999999999999999999999533221  11111111111          0 112233


Q ss_pred             HHHHHHHHHHHhccCCCCCCC-----CHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRP-----TMRDIAA  631 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RP-----s~~ev~~  631 (664)
                      .+..+.+++.+||+.||++||     +++++++
T Consensus       224 ~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~l~  256 (280)
T cd05608         224 FSPASKSFCEALLAKDPEKRLGFRDGNCDGLRT  256 (280)
T ss_pred             CCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHhc
Confidence            445688999999999999999     5566664

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=100.00  E-value=6.3e-35  Score=298.60  Aligned_cols=245  Identities=21%  Similarity=0.340  Sum_probs=192.8

Q ss_pred             hhhcccccCCCeEEEEEEECC----CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          373 DFSNVIGSSPIGTVYKGTLSN----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~~----~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      .+.+.||+|+||.||+|...+    ...+++|.......    ....+.|.+|+.++++++||||+++++++...   ..
T Consensus         9 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~----~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~---~~   81 (270)
T cd05056           9 TLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTS----PSVREKFLQEAYIMRQFDHPHIVKLIGVITEN---PV   81 (270)
T ss_pred             eeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCC----HHHHHHHHHHHHHHHhCCCCchhceeEEEcCC---Cc
Confidence            455889999999999998643    24678887753321    23456899999999999999999999998753   35


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++||||+++|+|.+++... ...+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+|++|||+++...
T Consensus        82 ~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~l~~~l~~lH~~~--~~H~dl~p~nili~~~~~~~l~d~g~~~~~~  158 (270)
T cd05056          82 WIVMELAPLGELRSYLQVN-KYSLDLASLILYSYQLSTALAYLESKR--FVHRDIAARNVLVSSPDCVKLGDFGLSRYLE  158 (270)
T ss_pred             EEEEEcCCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhCC--eeccccChheEEEecCCCeEEccCceeeecc
Confidence            8999999999999998643 346899999999999999999999988  9999999999999999999999999987543


Q ss_pred             hh----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 006019          529 MA----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  597 (664)
Q Consensus       529 ~~----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  597 (664)
                      ..          ...+.+||......++.++|||||||++||+++ |+.||....  ..+.......+ ...        
T Consensus       159 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~--~~~~~~~~~~~-~~~--------  227 (270)
T cd05056         159 DESYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVK--NNDVIGRIENG-ERL--------  227 (270)
T ss_pred             cccceecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCC--HHHHHHHHHcC-CcC--------
Confidence            21          123557887777778999999999999999997 999994322  12222222111 111        


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          598 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       598 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                       ..+..++..+.+++.+||..+|++||++.++++.|+++...
T Consensus       228 -~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~~~~l~~~~~~  268 (270)
T cd05056         228 -PMPPNCPPTLYSLMTKCWAYDPSKRPRFTELKAQLSDILQE  268 (270)
T ss_pred             -CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence             11223345789999999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=100.00  E-value=3.3e-34  Score=294.79  Aligned_cols=244  Identities=18%  Similarity=0.281  Sum_probs=190.9

Q ss_pred             hhcccccCCCeEEEEEEEC-CCc----EEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGV----EIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~----~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      +.+.||+|+||.||+|++. ++.    .||+|.+....    .....+++.+|+.+++.++|+||++++++|...   ..
T Consensus        11 ~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~----~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~---~~   83 (279)
T cd05109          11 KVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENT----SPKANKEILDEAYVMAGVGSPYVCRLLGICLTS---TV   83 (279)
T ss_pred             eeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCC----CHHHHHHHHHHHHHHHhcCCCCCceEEEEEcCC---Cc
Confidence            3478999999999999853 444    47888775322    234467899999999999999999999999754   35


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++++||+++|+|.++++.. ...+++..++.++.+++.||+|||+.+  ++||||||+|||+++++.+||+|||+++...
T Consensus        84 ~l~~~~~~~g~l~~~l~~~-~~~~~~~~~~~~~~qi~~~L~~lH~~~--iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~~  160 (279)
T cd05109          84 QLVTQLMPYGCLLDYVREN-KDRIGSQDLLNWCVQIAKGMSYLEEVR--LVHRDLAARNVLVKSPNHVKITDFGLARLLD  160 (279)
T ss_pred             EEEEEcCCCCCHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHHCC--eeccccccceEEEcCCCcEEECCCCceeecc
Confidence            7999999999999998743 346899999999999999999999998  9999999999999999999999999987653


Q ss_pred             hh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCC
Q 006019          529 MA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  596 (664)
Q Consensus       529 ~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  596 (664)
                      ..           ...+.+||......++.++|||||||++|||+| |+.||....  ..+... .+......       
T Consensus       161 ~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~--~~~~~~-~~~~~~~~-------  230 (279)
T cd05109         161 IDETEYHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIP--AREIPD-LLEKGERL-------  230 (279)
T ss_pred             cccceeecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCC--HHHHHH-HHHCCCcC-------
Confidence            11           123556777777778999999999999999999 999984321  111111 11111111       


Q ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          597 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       597 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                        ..+...+..+.+++.+||+.||++||++.++++.|+++...
T Consensus       231 --~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~l~~~l~~~~~~  271 (279)
T cd05109         231 --PQPPICTIDVYMIMVKCWMIDSECRPRFRELVDEFSRMARD  271 (279)
T ss_pred             --CCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhcC
Confidence              01122345688999999999999999999999999988553

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=2.3e-34  Score=309.47  Aligned_cols=241  Identities=16%  Similarity=0.241  Sum_probs=184.3

Q ss_pred             hcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||+|+. .++..+|+|++.......  ....+.+.+|++++++++|+|||++++++.+.+  ..++|||
T Consensus         6 ~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~--~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~--~~~lv~E   81 (381)
T cd05626           6 IKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLN--RNQVAHVKAERDILAEADNEWVVKLYYSFQDKD--NLYFVMD   81 (381)
T ss_pred             EEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhh--hHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCC--EEEEEEe
Confidence            47899999999999986 467899999987543221  234567899999999999999999999998876  7899999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh-----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA-----  528 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~-----  528 (664)
                      |+++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...     
T Consensus        82 ~~~gg~L~~~l~~--~~~~~e~~~~~~~~qi~~aL~~LH~~g--ivHrDlKp~Nili~~~~~~kL~DFGl~~~~~~~~~~  157 (381)
T cd05626          82 YIPGGDMMSLLIR--MEVFPEVLARFYIAELTLAIESVHKMG--FIHRDIKPDNILIDLDGHIKLTDFGLCTGFRWTHNS  157 (381)
T ss_pred             cCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCC--eeecCCcHHHEEECCCCCEEEeeCcCCccccccccc
Confidence            9999999999863  345888888999999999999999998  9999999999999999999999999875321     


Q ss_pred             ---------------------------------------------------hhhhhcccccccCCCCCCcCCcchhhHHH
Q 006019          529 ---------------------------------------------------MAEMAATSKKLSSAPSASLESNVYNFGVL  557 (664)
Q Consensus       529 ---------------------------------------------------~~~~~~~~pe~~~~~~~s~ksDVySfGvv  557 (664)
                                                                         .+...+.+||......++.++|||||||+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~i  237 (381)
T cd05626         158 KYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVI  237 (381)
T ss_pred             ccccccccccccccCcccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccceeehhhH
Confidence                                                               01234556777766778999999999999


Q ss_pred             HHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHH--hccCCCCCCCCHHHHHHH
Q 006019          558 LFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKS--CVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       558 l~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~--Cl~~~P~~RPs~~ev~~~  632 (664)
                      +|||+||+.||....  ..+............   .-+....    ...++.+++.+  |+..+|..||++.++++.
T Consensus       238 l~elltG~~Pf~~~~--~~~~~~~i~~~~~~~---~~~~~~~----~s~~~~dli~~ll~~~~~~~~R~~~~~~l~h  305 (381)
T cd05626         238 LFEMLVGQPPFLAPT--PTETQLKVINWENTL---HIPPQVK----LSPEAVDLITKLCCSAEERLGRNGADDIKAH  305 (381)
T ss_pred             HHHHHhCCCCCcCCC--HHHHHHHHHcccccc---CCCCCCC----CCHHHHHHHHHHccCcccccCCCCHHHHhcC
Confidence            999999999995332  122222222111111   0111111    22456778876  667777789999999764

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.1e-34  Score=291.98  Aligned_cols=241  Identities=17%  Similarity=0.226  Sum_probs=190.4

Q ss_pred             hcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||+|.. .++..+++|.+.............+.+.+|++++++++||||+++++++...+  ..++|+|
T Consensus         7 ~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~~v~e   84 (263)
T cd06625           7 GKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDE--TLSIFME   84 (263)
T ss_pred             cceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCC--eEEEEEE
Confidence            47899999999999986 46889999988754433222233467899999999999999999999998877  7899999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++++|.+++..  ...+++....+++.+++.|++|||+.+  ++||||+|+||++++++.+||+|||+++....    
T Consensus        85 ~~~~~~l~~~~~~--~~~~~~~~~~~~~~~l~~~l~~lH~~~--i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~~~  160 (263)
T cd06625          85 YMPGGSVKDQLKA--YGALTETVTRKYTRQILEGVEYLHSNM--IVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSS  160 (263)
T ss_pred             ECCCCcHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEcCCCCEEEeecccceeccccccc
Confidence            9999999998863  345888999999999999999999998  99999999999999999999999999865421    


Q ss_pred             --------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 006019          530 --------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  601 (664)
Q Consensus       530 --------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  601 (664)
                              ....+.+||......++.++||||||+++|||++|+.||...  ..............         ....+
T Consensus       161 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~--~~~~~~~~~~~~~~---------~~~~~  229 (263)
T cd06625         161 GTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEF--EAMAAIFKIATQPT---------NPQLP  229 (263)
T ss_pred             cccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCcccc--chHHHHHHHhccCC---------CCCCC
Confidence                    112355788777777899999999999999999999998422  11111111111100         11122


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          602 EEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       602 ~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      ......+.+++.+||..+|++||++.++++.
T Consensus       230 ~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  260 (263)
T cd06625         230 SHVSPDARNFLRRTFVENAKKRPSAEELLRH  260 (263)
T ss_pred             ccCCHHHHHHHHHHhhcCcccCCCHHHHhhC
Confidence            3344568899999999999999999998863

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.8e-35  Score=276.32  Aligned_cols=240  Identities=16%  Similarity=0.260  Sum_probs=197.7

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +++.||+|.||.||.|+.+ ++..||+|++.+.....  ....+++.+|+++-+.++||||.+++||+.+..  ..||++
T Consensus        26 igr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~--~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~--riyLil  101 (281)
T KOG0580|consen   26 IGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILK--TQVEHQLRREIEIQSHLRHPNILRLYGYFHDSK--RIYLIL  101 (281)
T ss_pred             ccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHH--hcchhhhhheeEeecccCCccHHhhhhheeccc--eeEEEE
Confidence            4589999999999999965 57899999987654322  345678999999999999999999999999887  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||.++|+++..|+......++......+..|+|.|+.|+|.++  |+|||+||+|+|++.++..||+|||-+...+.   
T Consensus       102 Eya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k~--VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p~~kR  179 (281)
T KOG0580|consen  102 EYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLKR--VIHRDIKPENLLLGSAGELKIADFGWSVHAPSNKR  179 (281)
T ss_pred             EecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccCC--cccCCCCHHHhccCCCCCeeccCCCceeecCCCCc
Confidence            9999999999998777778888888899999999999999999  99999999999999999999999998765431   


Q ss_pred             ----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 006019          530 ----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  605 (664)
Q Consensus       530 ----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  605 (664)
                          .+..+.+||...+...+.+.|+|++||+.||++.|..||....  -.+..+.+..-     ++.+      +....
T Consensus       180 ~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~--~~etYkrI~k~-----~~~~------p~~is  246 (281)
T KOG0580|consen  180 KTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQS--HSETYKRIRKV-----DLKF------PSTIS  246 (281)
T ss_pred             eeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhh--hHHHHHHHHHc-----cccC------CcccC
Confidence                2344557888888889999999999999999999999994322  22222222211     1111      23334


Q ss_pred             HHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          606 ETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       606 ~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      ..+.+++.+|+..+|.+|.+..|+++.
T Consensus       247 ~~a~dlI~~ll~~~p~~r~~l~~v~~h  273 (281)
T KOG0580|consen  247 GGAADLISRLLVKNPIERLALTEVMDH  273 (281)
T ss_pred             hhHHHHHHHHhccCccccccHHHHhhh
Confidence            568899999999999999999988763

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=100.00  E-value=4.4e-35  Score=299.42  Aligned_cols=240  Identities=25%  Similarity=0.407  Sum_probs=188.3

Q ss_pred             cccccCCCeEEEEEEECC-------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          376 NVIGSSPIGTVYKGTLSN-------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~-------~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      +.||+|+||.||+|+..+       +..+++|.+.....    .....+|.+|++++++++||||+++++++...+  ..
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~   74 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGAT----DQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNE--PQ   74 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccc----hhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCC--Ce
Confidence            369999999999998643       25788887753321    223567999999999999999999999998766  57


Q ss_pred             EEEEEecCCCChhhhhccc-----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC-----ceEe
Q 006019          449 MMVFEYAPNGTLFEHIHIK-----ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY-----AAKL  518 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~-----~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~-----~~kl  518 (664)
                      ++||||+++|+|.++++..     ....++|.+++.++.+++.||+|||+.+  ++|+||||+||+++.+.     .+|+
T Consensus        75 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~--i~H~dl~p~nil~~~~~~~~~~~~~l  152 (269)
T cd05044          75 YIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMH--FIHRDLAARNCLVSEKGYDADRVVKI  152 (269)
T ss_pred             EEEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhCC--cccCCCChheEEEecCCCCCCcceEE
Confidence            9999999999999998643     2244889999999999999999999988  99999999999999887     8999


Q ss_pred             cccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCC
Q 006019          519 SDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGV  586 (664)
Q Consensus       519 ~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~  586 (664)
                      +|||+++.....           ...+.+||+.....++.++|||||||++|||+| |+.||....  ..+.......+ 
T Consensus       153 ~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~--~~~~~~~~~~~-  229 (269)
T cd05044         153 GDFGLARDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALN--NQEVLQHVTAG-  229 (269)
T ss_pred             CCcccccccccccccccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccC--HHHHHHHHhcC-
Confidence            999998754321           123456887777788999999999999999998 999984322  22222211111 


Q ss_pred             CCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHh
Q 006019          587 QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  635 (664)
Q Consensus       587 ~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~  635 (664)
                      ..         ...+...+..+.+++.+||+.+|++||++.++++.|++
T Consensus       230 ~~---------~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  269 (269)
T cd05044         230 GR---------LQKPENCPDKIYQLMTNCWAQDPSERPTFDRIQEILQN  269 (269)
T ss_pred             Cc---------cCCcccchHHHHHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence            10         01122344678899999999999999999999999874

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=2.2e-34  Score=292.26  Aligned_cols=233  Identities=21%  Similarity=0.335  Sum_probs=180.7

Q ss_pred             cccccCCCeEEEEEEECCCc-----------EEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCC
Q 006019          376 NVIGSSPIGTVYKGTLSNGV-----------EIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE  444 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~~~-----------~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~  444 (664)
                      +.||+|+||.||+|...+..           .+++|.+....      .....|.+|+.++++++|+||++++|++.. .
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~------~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~   73 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDH------RDSLAFFETASLMSQLSHKHLVKLYGVCVR-D   73 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccch------hhHHHHHHHHHHHHcCCCcchhheeeEEec-C
Confidence            36999999999999976432           45666554221      115789999999999999999999999987 4


Q ss_pred             CceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC-------ceE
Q 006019          445 PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY-------AAK  517 (664)
Q Consensus       445 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~-------~~k  517 (664)
                        ..++|+||+++|+|.++++.. ...+++..+..++.+++.||+|||+++  ++||||||+||+++.++       .+|
T Consensus        74 --~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~LH~~~--i~H~dlkp~Nill~~~~~~~~~~~~~k  148 (259)
T cd05037          74 --ENIMVEEYVKFGPLDVFLHRE-KNNVSLHWKLDVAKQLASALHYLEDKK--LVHGNVCGKNILVARYGLNEGYVPFIK  148 (259)
T ss_pred             --CcEEEEEcCCCCcHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHhhCC--eecccCccceEEEecCccccCCceeEE
Confidence              458999999999999998643 237899999999999999999999988  99999999999999888       799


Q ss_pred             ecccCchhhhhh-----hhhhcccccccCCC--CCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCC
Q 006019          518 LSDLSFWNEIAM-----AEMAATSKKLSSAP--SASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPL  589 (664)
Q Consensus       518 l~DfGla~~~~~-----~~~~~~~pe~~~~~--~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~  589 (664)
                      |+|||+++....     ....+.+||+....  .++.++|||||||++|||++ |..|+....  ..++...+... .. 
T Consensus       149 l~Dfg~a~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~--~~~~~~~~~~~-~~-  224 (259)
T cd05037         149 LSDPGIPITVLSREERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLS--SSEKERFYQDQ-HR-  224 (259)
T ss_pred             eCCCCcccccccccccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCC--chhHHHHHhcC-CC-
Confidence            999999887532     22345678876655  78899999999999999999 577773221  22222211111 00 


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 006019          590 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR  634 (664)
Q Consensus       590 ~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~  634 (664)
                              ...+  ....+.+++.+||..+|++||++.+|++.|+
T Consensus       225 --------~~~~--~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~  259 (259)
T cd05037         225 --------LPMP--DCAELANLINQCWTYDPTKRPSFRAILRDLN  259 (259)
T ss_pred             --------CCCC--CchHHHHHHHHHhccChhhCCCHHHHHHhcC
Confidence                    0000  0156889999999999999999999998873

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=1.2e-34  Score=304.76  Aligned_cols=231  Identities=19%  Similarity=0.224  Sum_probs=182.0

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHH-HHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKID-TLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~-~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.||+|+||.||+|+.. +|+.||+|++.......  ....+++..|.. +++.++||||+++++++...+  ..++|||
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~--~~~lv~e   76 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILK--KKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTAD--KLYFVLD   76 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhh--hhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCC--EEEEEEc
Confidence            36999999999999975 68999999986543221  122344555555 567899999999999998776  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....    
T Consensus        77 ~~~~g~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~g--ivH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~~~  152 (323)
T cd05575          77 YVNGGELFFHLQR--ERSFPEPRARFYAAEIASALGYLHSLN--IIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSKT  152 (323)
T ss_pred             CCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEeCCCCHHHeEECCCCcEEEeccCCCcccccCCCc
Confidence            9999999998863  346889999999999999999999998  99999999999999999999999999875321    


Q ss_pred             -----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          530 -----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       530 -----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                           ....+.+||......++.++|||||||++|||+||+.||..  .+..+...........    .       +...
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~--~~~~~~~~~i~~~~~~----~-------~~~~  219 (323)
T cd05575         153 TSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYS--RDTAEMYDNILNKPLR----L-------KPNI  219 (323)
T ss_pred             cccccCChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCC--CCHHHHHHHHHcCCCC----C-------CCCC
Confidence                 12345678888778889999999999999999999999943  3334444433332111    1       1122


Q ss_pred             HHHHHHHHHHhccCCCCCCCCHH
Q 006019          605 LETLGELIKSCVRADPEKRPTMR  627 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RPs~~  627 (664)
                      ...+.+++.+|++.||++||+++
T Consensus       220 ~~~~~~li~~~l~~~p~~R~~~~  242 (323)
T cd05575         220 SVSARHLLEGLLQKDRTKRLGAK  242 (323)
T ss_pred             CHHHHHHHHHHhhcCHHhCCCCC
Confidence            35688999999999999999985

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=1.1e-34  Score=304.31  Aligned_cols=230  Identities=20%  Similarity=0.226  Sum_probs=183.0

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeEEEEE
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.||+|+||.||+|+.. ++..||+|++.......  ....+.+..|..++... +||||+++++++...+  ..++|||
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~--~~~iv~E   76 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQ--DDDVECTMTEKRILSLARNHPFLTQLYCCFQTPD--RLFFVME   76 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhh--ccHHHHHHHHHHHHHhccCCCchhceeeEEEcCC--EEEEEEc
Confidence            36999999999999975 57899999986533211  12345678888888876 6999999999998776  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|+|.+++..  ...+++..+..++.+++.||+|||+.+  |+||||||+|||+++++.+||+|||+++....    
T Consensus        77 y~~~g~L~~~i~~--~~~l~~~~~~~~~~ql~~~L~~lH~~~--ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~~~  152 (320)
T cd05590          77 FVNGGDLMFHIQK--SRRFDEARARFYAAEITSALMFLHDKG--IIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKT  152 (320)
T ss_pred             CCCCchHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCCCc
Confidence            9999999988863  356899999999999999999999998  99999999999999999999999999775311    


Q ss_pred             -----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          530 -----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       530 -----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                           ....+.+||......++.++|||||||++|||+||+.||..  ....+.......+...           .+...
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~--~~~~~~~~~i~~~~~~-----------~~~~~  219 (320)
T cd05590         153 TSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEA--ENEDDLFEAILNDEVV-----------YPTWL  219 (320)
T ss_pred             ccccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCC--CCHHHHHHHHhcCCCC-----------CCCCC
Confidence                 12345678887777889999999999999999999999943  2333333333322111           11123


Q ss_pred             HHHHHHHHHHhccCCCCCCCCH
Q 006019          605 LETLGELIKSCVRADPEKRPTM  626 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RPs~  626 (664)
                      ..++.+++.+|++.||++||++
T Consensus       220 ~~~~~~li~~~L~~dP~~R~~~  241 (320)
T cd05590         220 SQDAVDILKAFMTKNPTMRLGS  241 (320)
T ss_pred             CHHHHHHHHHHcccCHHHCCCC
Confidence            3568899999999999999998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=100.00  E-value=3.3e-34  Score=293.07  Aligned_cols=242  Identities=23%  Similarity=0.360  Sum_probs=179.5

Q ss_pred             ccccCCCeEEEEEEECCC---cEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          377 VIGSSPIGTVYKGTLSNG---VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       377 ~iG~G~~G~Vy~g~~~~~---~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .||+|+||.||+|...++   ..+++|.+....    .......|.+|++.++.++|+||+++++++....  ..++|||
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~----~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~--~~~lv~e   75 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASA----TPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESI--PYLLVLE   75 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccC----ChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCC--ceEEEEE
Confidence            599999999999986443   456666654321    1234567899999999999999999999998776  5699999


Q ss_pred             ecCCCChhhhhcccC---CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh
Q 006019          454 YAPNGTLFEHIHIKE---SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~---~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~  530 (664)
                      |+++|+|.+++....   ....++.....++.|++.|++|||+.+  |+||||||+|||+++++.+||+|||+++.....
T Consensus        76 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~  153 (269)
T cd05042          76 FCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQAD--FIHSDLALRNCQLTADLSVKIGDYGLALEQYPE  153 (269)
T ss_pred             eCCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhcC--EecccccHhheEecCCCcEEEeccccccccccc
Confidence            999999999986432   234568888999999999999999998  999999999999999999999999998653211


Q ss_pred             -----------hhhcccccccC-------CCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCcc
Q 006019          531 -----------EMAATSKKLSS-------APSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQ  591 (664)
Q Consensus       531 -----------~~~~~~pe~~~-------~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~  591 (664)
                                 ...+.+||...       ....+.++|||||||++|||++ |+.||...  ...+.........  ...
T Consensus       154 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~--~~~~~~~~~~~~~--~~~  229 (269)
T cd05042         154 DYYITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDL--SDEQVLKQVVREQ--DIK  229 (269)
T ss_pred             hheeccCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcC--CHHHHHHHHhhcc--Ccc
Confidence                       12245666532       2356789999999999999999 78888422  1122222222211  111


Q ss_pred             ccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 006019          592 FVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR  634 (664)
Q Consensus       592 ~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~  634 (664)
                      +.++.+   +......+.+++..|| .||++||++++|++.|.
T Consensus       230 ~~~~~~---~~~~~~~~~~~~~~~~-~dp~~Rpt~~~v~~~l~  268 (269)
T cd05042         230 LPKPQL---DLKYSDRWYEVMQFCW-LDPETRPTAEEVHELLT  268 (269)
T ss_pred             CCCCcc---cccCCHHHHHHHHHHh-cCcccccCHHHHHHHhc
Confidence            112221   2233456778899999 59999999999998873

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=3.4e-34  Score=291.96  Aligned_cols=234  Identities=21%  Similarity=0.388  Sum_probs=179.1

Q ss_pred             cccccCCCeEEEEEEECC-------------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEec
Q 006019          376 NVIGSSPIGTVYKGTLSN-------------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEE  442 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~-------------~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~  442 (664)
                      +.||+|+||.||+|.+..             ...+++|.+....     ......|.+|+.+++.++||||+++++++..
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~-----~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~   75 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSH-----RDISLAFFETASMMRQVSHKHIVLLYGVCVR   75 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhh-----hhHHHHHHHHHHHHHhCCCCCEeeEEEEEec
Confidence            368999999999998632             2246777654322     2334678999999999999999999999987


Q ss_pred             CCCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCc-------
Q 006019          443 EEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA-------  515 (664)
Q Consensus       443 ~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~-------  515 (664)
                      ..  ..++||||+++|+|..+++. ....+++..+.+++.|++.|++|||+.+  |+||||||+|||++.++.       
T Consensus        76 ~~--~~~lv~e~~~~~~l~~~~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~~--ivH~dlkp~Nill~~~~~~~~~~~~  150 (262)
T cd05077          76 DV--ENIMVEEFVEFGPLDLFMHR-KSDVLTTPWKFKVAKQLASALSYLEDKD--LVHGNVCTKNILLAREGIDGECGPF  150 (262)
T ss_pred             CC--CCEEEEecccCCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHhhhCC--eECCCCCcccEEEecCCccCCCCce
Confidence            76  56999999999999888763 3356899999999999999999999998  999999999999987664       


Q ss_pred             eEecccCchhhhhh-----hhhhcccccccC-CCCCCcCCcchhhHHHHHHHH-hCCCCccCCCCChHHHHHHHhcCCCC
Q 006019          516 AKLSDLSFWNEIAM-----AEMAATSKKLSS-APSASLESNVYNFGVLLFEMV-TGRLPYLVDNGSLEDWAADYLSGVQP  588 (664)
Q Consensus       516 ~kl~DfGla~~~~~-----~~~~~~~pe~~~-~~~~s~ksDVySfGvvl~El~-tG~~P~~~~~~~~~~~~~~~~~~~~~  588 (664)
                      +|++|||++.....     ....+.+||... ...++.++|||||||++|||+ +|+.|+....  ..+.. ....... 
T Consensus       151 ~~l~d~g~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~--~~~~~-~~~~~~~-  226 (262)
T cd05077         151 IKLSDPGIPITVLSRQECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKT--LAEKE-RFYEGQC-  226 (262)
T ss_pred             eEeCCCCCCccccCcccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcc--hhHHH-HHHhcCc-
Confidence            89999999875532     223466788765 456888999999999999998 5888874221  11111 1111100 


Q ss_pred             CccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 006019          589 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL  633 (664)
Q Consensus       589 ~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L  633 (664)
                        ...        ......+.+++.+||+.||++||++.+|++.+
T Consensus       227 --~~~--------~~~~~~~~~li~~cl~~dp~~Rp~~~~il~~~  261 (262)
T cd05077         227 --MLV--------TPSCKELADLMTHCMNYDPNQRPFFRAIMRDI  261 (262)
T ss_pred             --cCC--------CCChHHHHHHHHHHcCCChhhCcCHHHHHHhc
Confidence              000        11124688999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=1.2e-34  Score=299.50  Aligned_cols=246  Identities=15%  Similarity=0.199  Sum_probs=184.3

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. ++..||+|.+......    .....+.+|++++++++||||+++++++...+  ..++||
T Consensus         9 ~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~----~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~--~~~lv~   82 (288)
T cd07871           9 KLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEE----GAPCTAIREVSLLKNLKHANIVTLHDIIHTER--CLTLVF   82 (288)
T ss_pred             EeeEEecCCCEEEEEEEECCCCCEEEEEEecccccC----CcchhHHHHHHHHHhCCCCCEeeEEEEEcCCC--eEEEEE
Confidence            3478999999999999965 6889999998654322    12346789999999999999999999998766  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||++ |+|.+++.. ....+++.....++.+++.||+|||+.+  |+||||||+|||+++++.+||+|||+++....   
T Consensus        83 e~~~-~~l~~~l~~-~~~~~~~~~~~~~~~qi~~aL~~LH~~~--ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~~~  158 (288)
T cd07871          83 EYLD-SDLKQYLDN-CGNLMSMHNVKIFMFQLLRGLSYCHKRK--ILHRDLKPQNLLINEKGELKLADFGLARAKSVPTK  158 (288)
T ss_pred             eCCC-cCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHHEEECCCCCEEECcCcceeeccCCCc
Confidence            9997 499888753 2345789999999999999999999998  99999999999999999999999999875421   


Q ss_pred             ------hhhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCC--------------CC
Q 006019          530 ------AEMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV--------------QP  588 (664)
Q Consensus       530 ------~~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~--------------~~  588 (664)
                            ....+.+||.... ..++.++||||+||++|||+||+.||....  ..+.........              ..
T Consensus       159 ~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (288)
T cd07871         159 TYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGST--VKEELHLIFRLLGTPTEETWPGITSNEE  236 (288)
T ss_pred             cccCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHhCCCChHHhhccccchh
Confidence                  1234556886543 567889999999999999999999995322  222221111100              00


Q ss_pred             CccccCCCCCC-----CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          589 LQQFVDPTLSS-----FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       589 ~~~~~d~~~~~-----~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ......+....     .......++.+++.+|++.||.+|||++|+++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~~l~  284 (288)
T cd07871         237 FRSYLFPQYRAQPLINHAPRLDTDGIDLLSSLLLYETKSRISAEAALR  284 (288)
T ss_pred             hhccccCccCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence            01111111100     01122356789999999999999999999874

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=100.00  E-value=1.9e-34  Score=299.14  Aligned_cols=250  Identities=22%  Similarity=0.328  Sum_probs=189.7

Q ss_pred             hhhcccccCCCeEEEEEEECC-----------------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccc
Q 006019          373 DFSNVIGSSPIGTVYKGTLSN-----------------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN  435 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~~-----------------~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~  435 (664)
                      .+.+.||+|+||.||+|...+                 +..+|+|.+.....    .....+|.+|++++++++|+||++
T Consensus         8 ~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~----~~~~~~~~~e~~~l~~l~~~~i~~   83 (296)
T cd05051           8 NFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDAS----DNAREDFLKEVKILSRLSDPNIAR   83 (296)
T ss_pred             cccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccC----HHHHHHHHHHHHHHHhcCCCCEeE
Confidence            345789999999999998643                 24578888754321    234578999999999999999999


Q ss_pred             eEEEEecCCCceeEEEEEecCCCChhhhhcccC---------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCC
Q 006019          436 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE---------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSS  506 (664)
Q Consensus       436 l~g~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~---------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~  506 (664)
                      +++++...+  ..++++||+++++|.+++....         ...+++.....++.+++.||+|||+.+  ++||||||+
T Consensus        84 ~~~~~~~~~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~~--i~H~dlkp~  159 (296)
T cd05051          84 LLGVCTVDP--PLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLN--FVHRDLATR  159 (296)
T ss_pred             EEEEEecCC--CcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcC--ccccccchh
Confidence            999998776  5699999999999999986432         136899999999999999999999998  999999999


Q ss_pred             CeEecCCCceEecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh--CCCCccCCCC
Q 006019          507 AVHLTEDYAAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT--GRLPYLVDNG  573 (664)
Q Consensus       507 NILld~~~~~kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t--G~~P~~~~~~  573 (664)
                      ||+++.++.++|+|||+++.....           ...+.+||......++.++|||||||++|||++  |..||...  
T Consensus       160 Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~--  237 (296)
T cd05051         160 NCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHL--  237 (296)
T ss_pred             ceeecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCc--
Confidence            999999999999999998754221           123567887777778999999999999999998  67777321  


Q ss_pred             ChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHh
Q 006019          574 SLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  635 (664)
Q Consensus       574 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~  635 (664)
                      ...+............   ........+...+.++.+++.+||+.||++||++.+|++.|++
T Consensus       238 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rpt~~el~~~L~~  296 (296)
T cd05051         238 TDQQVIENAGHFFRDD---GRQIYLPRPPNCPKDIYELMLECWRRDEEDRPTFREIHLFLQR  296 (296)
T ss_pred             ChHHHHHHHHhccccc---cccccCCCccCCCHHHHHHHHHHhccChhcCCCHHHHHHHhcC
Confidence            1121111111100000   0000011122334579999999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=100.00  E-value=3.4e-34  Score=301.78  Aligned_cols=247  Identities=15%  Similarity=0.252  Sum_probs=185.6

Q ss_pred             hhcccccC--CCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEE
Q 006019          374 FSNVIGSS--PIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  450 (664)
Q Consensus       374 ~~~~iG~G--~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~l  450 (664)
                      +.++||+|  +|++||+++. .+|..||+|++......   ....+.+.+|+++++.++||||+++++++..++  ..++
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~--~~~l   76 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACT---NEMVTFLQGELHVSKLFNHPNIVPYRATFIADN--ELWV   76 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhcc---HHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECC--EEEE
Confidence            34679999  7899999986 46899999998654322   234456788999999999999999999998877  6799


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh-
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM-  529 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~-  529 (664)
                      |+||+++|+|.+++.......+++..+.+++.|++.||+|||+.+  |+||||||+|||++.++.++++||+....... 
T Consensus        77 v~e~~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~--iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~  154 (327)
T cd08227          77 VTSFMAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHMG--YVHRSVKASHILISVDGKVYLSGLRSNLSMINH  154 (327)
T ss_pred             EEeccCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCC--EecCCCChhhEEEecCCcEEEcccchhhccccc
Confidence            999999999999986444456899999999999999999999998  99999999999999999999999986433211 


Q ss_pred             ---------------hhhhcccccccCC--CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccc
Q 006019          530 ---------------AEMAATSKKLSSA--PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQF  592 (664)
Q Consensus       530 ---------------~~~~~~~pe~~~~--~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~  592 (664)
                                     ....+.+||....  ..++.++|||||||++|||+||+.||.....  .+.......+  .....
T Consensus       155 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~--~~~~~~~~~~--~~~~~  230 (327)
T cd08227         155 GQRLRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPA--TQMLLEKLNG--TVPCL  230 (327)
T ss_pred             cccccccccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCcch--hHHHHHHhcC--Ccccc
Confidence                           1122456776654  3578999999999999999999999953211  1111111110  00000


Q ss_pred             cC-------------------C------------------CCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          593 VD-------------------P------------------TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       593 ~d-------------------~------------------~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .+                   .                  ............+.+++.+||+.||++|||+.++++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~ell~  306 (327)
T cd08227         231 LDTTTIPAEELTMKPSRSGANSGLGESTTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNPDARPSASTLLN  306 (327)
T ss_pred             ccccchhhhhcccCCcccCCcCCCCcccccCCcCccccCCcccccccccCHHHHHHHHHHHhhCchhcCCHHHHhc
Confidence            00                   0                  000111223457889999999999999999999986

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=4.1e-35  Score=302.29  Aligned_cols=233  Identities=19%  Similarity=0.304  Sum_probs=196.5

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      ++||+|.||.||||+-+ +.+.||+|.+.+....   ....+...+|++++++++|||||.++..+....  +.++|+||
T Consensus         8 e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~---~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~--~~~vVte~   82 (808)
T KOG0597|consen    8 EMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRN---EKELKNLRQEVRILRSLKHPNIVEMLESFETSA--HLWVVTEY   82 (808)
T ss_pred             HHhcCCccceeeecccccceeEEEEEEehhcCCc---hHHHHHHHHHHHHHHhcCCcchhhHHHhhcccc--eEEEEehh
Confidence            68999999999999965 5788999988654322   334567999999999999999999999998877  78999999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh-----
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM-----  529 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~-----  529 (664)
                      +.+ +|+.+|.  ....+.......|+.++..||.|||+.+  |+|||+||.|||++..+.+|++|||+||.+..     
T Consensus        83 a~g-~L~~il~--~d~~lpEe~v~~~a~~LVsaL~yLhs~r--ilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~t~vl  157 (808)
T KOG0597|consen   83 AVG-DLFTILE--QDGKLPEEQVRAIAYDLVSALYYLHSNR--ILHRDMKPQNILLEKGGTLKLCDFGLARAMSTNTSVL  157 (808)
T ss_pred             hhh-hHHHHHH--hccCCCHHHHHHHHHHHHHHHHHHHhcC--cccccCCcceeeecCCCceeechhhhhhhcccCceee
Confidence            976 9999996  4467999999999999999999999999  99999999999999999999999999998752     


Q ss_pred             ----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 006019          530 ----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  605 (664)
Q Consensus       530 ----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  605 (664)
                          +...|++||...+..++..+|.||+||++||+++|++||.  ..++.+.++.+..+...           .+.+..
T Consensus       158 tsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~--a~si~~Lv~~I~~d~v~-----------~p~~~S  224 (808)
T KOG0597|consen  158 TSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFY--ARSITQLVKSILKDPVK-----------PPSTAS  224 (808)
T ss_pred             eeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCch--HHHHHHHHHHHhcCCCC-----------Cccccc
Confidence                3456778999999999999999999999999999999993  33445555555544211           123445


Q ss_pred             HHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          606 ETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       606 ~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ..+.+++...+.+||.+|.+-.+++.
T Consensus       225 ~~f~nfl~gLL~kdP~~RltW~~Ll~  250 (808)
T KOG0597|consen  225 SSFVNFLQGLLIKDPAQRLTWTDLLG  250 (808)
T ss_pred             HHHHHHHHHHhhcChhhcccHHHHhc
Confidence            67889999999999999999988764

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=1.9e-34  Score=303.85  Aligned_cols=237  Identities=20%  Similarity=0.258  Sum_probs=185.8

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeEEEEE
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.||+|+||.||+++.. ++..+|+|.+.......  ....+.+..|..++.++ +||||+++++++...+  ..++|||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~--~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~--~~~lv~e   76 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVND--DEDIDWVQTEKHVFETASNHPFLVGLHSCFQTES--RLFFVIE   76 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCC--EEEEEEe
Confidence            36999999999999965 58899999987543222  22345688999999998 7999999999998776  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh-----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA-----  528 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~-----  528 (664)
                      |+++|+|.+++..  ...+++..+..++.+++.||+|||+++  ++||||||+|||++.++.+||+|||+++...     
T Consensus        77 ~~~~g~L~~~~~~--~~~l~~~~~~~~~~qi~~~l~~lH~~~--ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~  152 (329)
T cd05588          77 FVSGGDLMFHMQR--QRKLPEEHARFYSAEISLALNFLHERG--IIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGDT  152 (329)
T ss_pred             CCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEecCCCHHHeEECCCCCEEECcCccccccccCCCc
Confidence            9999999988753  356999999999999999999999998  9999999999999999999999999987421     


Q ss_pred             ----hhhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCC------CCChHHHHHHHhcCCCCCccccCCCCC
Q 006019          529 ----MAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVD------NGSLEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       529 ----~~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~------~~~~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                          .....+.+||......++.++|||||||++|||+||+.||...      .....++....+....          .
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~----------~  222 (329)
T cd05588         153 TSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVILEKQ----------I  222 (329)
T ss_pred             cccccCCccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCcccccccccccccchHHHHHHHHcCC----------C
Confidence                1123456788887778899999999999999999999999521      1112233322222110          0


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCC------HHHHH
Q 006019          599 SFDEEQLETLGELIKSCVRADPEKRPT------MRDIA  630 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs------~~ev~  630 (664)
                      ..+.....++.+++.+|++.||++||+      +.+++
T Consensus       223 ~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~  260 (329)
T cd05588         223 RIPRSLSVKASSVLKGFLNKDPKERLGCHPQTGFRDIK  260 (329)
T ss_pred             CCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCHHHHh
Confidence            112223356889999999999999997      55665

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=100.00  E-value=7.3e-34  Score=290.51  Aligned_cols=242  Identities=22%  Similarity=0.321  Sum_probs=178.4

Q ss_pred             ccccCCCeEEEEEEECCCc---EEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          377 VIGSSPIGTVYKGTLSNGV---EIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       377 ~iG~G~~G~Vy~g~~~~~~---~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .||+|+||.||+|+..++.   .+++|.+....    .....+.|.+|+.+++.++||||++++++|....  ..++|||
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~----~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~--~~~lv~e   75 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANA----SSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAI--PYLLVFE   75 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCC----ChHHHHHHHHHHHHHhccCCcchhheEEEecCCC--ccEEEEe
Confidence            5999999999999864443   34455443221    1234568999999999999999999999998776  5699999


Q ss_pred             ecCCCChhhhhcccC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh--
Q 006019          454 YAPNGTLFEHIHIKE--SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM--  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~--~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~--  529 (664)
                      |+++|+|.++++...  .....+.....++.+++.||+|||+.+  ++||||||+|||++.++.+||+|||++.....  
T Consensus        76 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~--i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~  153 (268)
T cd05086          76 YCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKHN--FLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKED  153 (268)
T ss_pred             cCCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCC--eeccCCccceEEEcCCccEEecccccccccCcch
Confidence            999999999987432  234667778899999999999999988  99999999999999999999999998754211  


Q ss_pred             ---------hhhhcccccccCC-------CCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccc
Q 006019          530 ---------AEMAATSKKLSSA-------PSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQF  592 (664)
Q Consensus       530 ---------~~~~~~~pe~~~~-------~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~  592 (664)
                               ....+.+||+...       ...+.++|||||||++|||++ |+.||..  ....+.......+  .....
T Consensus       154 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~--~~~~~~~~~~~~~--~~~~~  229 (268)
T cd05086         154 YIETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSH--LSDREVLNHVIKD--QQVKL  229 (268)
T ss_pred             hhhcccCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHhh--ccccc
Confidence                     1123456775432       235789999999999999998 5778732  2223333333322  11222


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 006019          593 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR  634 (664)
Q Consensus       593 ~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~  634 (664)
                      .++.+..   .....+.+++..|| .+|++||++++|++.|.
T Consensus       230 ~~~~~~~---~~~~~~~~l~~~c~-~~P~~Rp~~~~i~~~l~  267 (268)
T cd05086         230 FKPQLEL---PYSERWYEVLQFCW-LSPEKRATAEEVHRLLT  267 (268)
T ss_pred             CCCccCC---CCcHHHHHHHHHHh-hCcccCCCHHHHHHHhc
Confidence            3333321   12345778999999 67999999999998873

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=100.00  E-value=4.5e-34  Score=289.68  Aligned_cols=237  Identities=23%  Similarity=0.393  Sum_probs=190.7

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.+.||+|+||.||+|.+.++..+++|.+.....      ...+|.+|++++++++|||++++++++....  ..++|+|
T Consensus         8 ~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~------~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~~v~e   79 (256)
T cd05112           8 LVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAM------SEEDFIEEAQVMMKLSHPKLVQLYGVCTERS--PICLVFE   79 (256)
T ss_pred             EEeeecCcccceEEEEEEeCCCeEEEEECCCCCC------CHHHHHHHHHHHHhCCCCCeeeEEEEEccCC--ceEEEEE
Confidence            4578999999999999987788899998754322      2357999999999999999999999998766  5699999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      |+++|+|.++++.. ...+++..+..++.+++.|++|||+.+  ++||||||+||+++.++.+||+|||+++.....   
T Consensus        80 ~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~lH~~~--i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~  156 (256)
T cd05112          80 FMEHGCLSDYLRAQ-RGKFSQETLLGMCLDVCEGMAYLESSN--VIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYT  156 (256)
T ss_pred             cCCCCcHHHHHHhC-ccCCCHHHHHHHHHHHHHHHHHHHHCC--ccccccccceEEEcCCCeEEECCCcceeecccCccc
Confidence            99999999998643 346889999999999999999999998  999999999999999999999999988754211   


Q ss_pred             -------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          531 -------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       531 -------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                             ...+.+||......++.++|||||||++|||++ |+.||..  ....+.......+.    ....+..     
T Consensus       157 ~~~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~--~~~~~~~~~~~~~~----~~~~~~~-----  225 (256)
T cd05112         157 SSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYEN--RSNSEVVETINAGF----RLYKPRL-----  225 (256)
T ss_pred             ccCCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCc--CCHHHHHHHHhCCC----CCCCCCC-----
Confidence                   123567887777788899999999999999998 9999842  22333333322211    1111221     


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 006019          603 EQLETLGELIKSCVRADPEKRPTMRDIAAIL  633 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L  633 (664)
                       .+..+.+++.+||+.+|++||++.++++.|
T Consensus       226 -~~~~~~~l~~~~l~~~p~~Rp~~~~~l~~l  255 (256)
T cd05112         226 -ASQSVYELMQHCWKERPEDRPSFSLLLHQL  255 (256)
T ss_pred             -CCHHHHHHHHHHcccChhhCCCHHHHHHhh
Confidence             235689999999999999999999999887

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=2.1e-34  Score=301.73  Aligned_cols=234  Identities=20%  Similarity=0.250  Sum_probs=181.7

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhc-cCCCcccceEEEEecCCCceeEEEEE
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSK-VNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~-l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.||+|+||.||+|+.. ++..||+|.+.......  ....+.+..|..++.. .+||||+++++++...+  ..++|||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~--~~~lv~e   76 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLE--DDDVECTMVERRVLALAWEHPFLTHLFCTFQTKE--HLFFVME   76 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh--hhhHHHHHHHHHHHHhccCCCCccceeeEEEcCC--EEEEEEc
Confidence            36999999999999975 57889999987543211  1223455667777765 48999999999998776  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|+|.+++..  ...++......++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....    
T Consensus        77 ~~~gg~L~~~~~~--~~~~~~~~~~~~~~qi~~al~~LH~~~--ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~~~  152 (316)
T cd05592          77 YLNGGDLMFHIQS--SGRFDEARARFYAAEIICGLQFLHKKG--IIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEGK  152 (316)
T ss_pred             CCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--EEeCCCCHHHeEECCCCCEEEccCcCCeECCCCCCc
Confidence            9999999998863  346889999999999999999999988  99999999999999999999999999875321    


Q ss_pred             -----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          530 -----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       530 -----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                           ....+.+||......++.++|||||||++|||++|+.||...  +..+.........           ..++...
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~--~~~~~~~~i~~~~-----------~~~~~~~  219 (316)
T cd05592         153 ASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGE--DEDELFDSILNDR-----------PHFPRWI  219 (316)
T ss_pred             cccccCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCC--CHHHHHHHHHcCC-----------CCCCCCC
Confidence                 123456788877777899999999999999999999999532  2233333222211           1112223


Q ss_pred             HHHHHHHHHHhccCCCCCCCCHH-HHH
Q 006019          605 LETLGELIKSCVRADPEKRPTMR-DIA  630 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RPs~~-ev~  630 (664)
                      ..++.+++.+||+.+|++||++. ++.
T Consensus       220 ~~~~~~ll~~~l~~~P~~R~~~~~~l~  246 (316)
T cd05592         220 SKEAKDCLSKLFERDPTKRLGVDGDIR  246 (316)
T ss_pred             CHHHHHHHHHHccCCHHHcCCChHHHH
Confidence            35678999999999999999875 443

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=1.7e-34  Score=302.89  Aligned_cols=235  Identities=20%  Similarity=0.244  Sum_probs=186.5

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeEEEEE
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.||+|+||.||+|+.. ++..+|+|++.......  ......+..|.+++..+ +||||+++++++...+  ..++|||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~--~~~lv~e   76 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQ--DDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKD--RLFFVME   76 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhh--hhHHHHHHHHHHHHHhccCCCCccceeeEEEcCC--EEEEEEc
Confidence            36999999999999975 47899999987543211  12345677899999887 7999999999998776  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|+|.+++..  ...+++.....++.+++.||+|||+.+  ++||||||+||++++++.+||+|||+++....    
T Consensus        77 ~~~~~~L~~~~~~--~~~l~~~~~~~~~~qi~~~l~~LH~~~--ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~  152 (318)
T cd05570          77 YVNGGDLMFHIQR--SGRFDEPRARFYAAEIVLGLQFLHERG--IIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVT  152 (318)
T ss_pred             CCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHhCC--eEccCCCHHHeEECCCCcEEecccCCCeecCcCCCc
Confidence            9999999988853  346999999999999999999999998  99999999999999999999999998864311    


Q ss_pred             -----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          530 -----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       530 -----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                           ....+.+||......++.++|||||||++|||+||+.||..  .+..+..........           .++...
T Consensus       153 ~~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~--~~~~~~~~~i~~~~~-----------~~~~~~  219 (318)
T cd05570         153 TSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEG--DDEDELFQSILEDEV-----------RYPRWL  219 (318)
T ss_pred             ccceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCC--CCHHHHHHHHHcCCC-----------CCCCcC
Confidence                 12345678888777889999999999999999999999943  223333333322211           112223


Q ss_pred             HHHHHHHHHHhccCCCCCCCCH-----HHHHH
Q 006019          605 LETLGELIKSCVRADPEKRPTM-----RDIAA  631 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RPs~-----~ev~~  631 (664)
                      ...+.+++.+||+.||++||++     .++++
T Consensus       220 ~~~~~~li~~~l~~dP~~R~s~~~~~~~~ll~  251 (318)
T cd05570         220 SKEAKSILKSFLTKNPEKRLGCLPTGEQDIKG  251 (318)
T ss_pred             CHHHHHHHHHHccCCHHHcCCCCCCCHHHHhc
Confidence            3568899999999999999999     77654

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=2.3e-34  Score=302.61  Aligned_cols=236  Identities=18%  Similarity=0.249  Sum_probs=183.7

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHH---hccCCCcccceEEEEecCCCceeE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTL---SKVNHKNFVNLIGFCEEEEPFTRM  449 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l---~~l~H~niv~l~g~~~~~~~~~~~  449 (664)
                      +.+.||+|+||.||+|+.. +++.||||++.......  ....+.+.+|++++   ++++||||+++++++...+  ..+
T Consensus         3 i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~--~~~   78 (324)
T cd05589           3 CLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIA--RDEVESLMCEKRIFETANSERHPFLVNLFACFQTED--HVC   78 (324)
T ss_pred             EEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCC--EEE
Confidence            3478999999999999965 58899999987543211  12234566666554   5678999999999998777  779


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                      +||||+++|+|..+++.   ..+++.....++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++....
T Consensus        79 lv~E~~~~~~L~~~~~~---~~l~~~~~~~~~~qi~~al~~lH~~~--ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~~  153 (324)
T cd05589          79 FVMEYAAGGDLMMHIHT---DVFSEPRAVFYAACVVLGLQYLHENK--IVYRDLKLDNLLLDTEGFVKIADFGLCKEGMG  153 (324)
T ss_pred             EEEcCCCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHhCC--eEecCCCHHHeEECCCCcEEeCcccCCccCCC
Confidence            99999999999988752   46999999999999999999999998  99999999999999999999999999875321


Q ss_pred             ---------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 006019          530 ---------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  600 (664)
Q Consensus       530 ---------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  600 (664)
                               ....+.+||......++.++|||||||++|||+||+.||..  ....+...........           +
T Consensus       154 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~--~~~~~~~~~i~~~~~~-----------~  220 (324)
T cd05589         154 FGDRTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPG--DDEEEVFDSIVNDEVR-----------Y  220 (324)
T ss_pred             CCCcccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCC--CCHHHHHHHHHhCCCC-----------C
Confidence                     12345678888777889999999999999999999999943  2333333333322111           1


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCC-----HHHHHH
Q 006019          601 DEEQLETLGELIKSCVRADPEKRPT-----MRDIAA  631 (664)
Q Consensus       601 ~~~~~~~l~~l~~~Cl~~~P~~RPs-----~~ev~~  631 (664)
                      +......+.+++.+||+.||++||+     +.++++
T Consensus       221 p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~l~~  256 (324)
T cd05589         221 PRFLSREAISIMRRLLRRNPERRLGSGEKDAEDVKK  256 (324)
T ss_pred             CCCCCHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhh
Confidence            2223356889999999999999994     555544

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.8e-34  Score=308.54  Aligned_cols=239  Identities=18%  Similarity=0.252  Sum_probs=187.2

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||+|+.. +++.||||++.......  ......+.+|++++..++||||+++++++.+.+  ..++|||
T Consensus         6 ~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~--~~~lv~E   81 (364)
T cd05599           6 IKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLE--KEQVAHVRAERDILAEADNPWVVKLYYSFQDEN--YLYLIME   81 (364)
T ss_pred             EEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCC--eEEEEEC
Confidence            478999999999999965 58899999997543211  233456889999999999999999999998877  7799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....    
T Consensus        82 ~~~~g~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~lH~~~--ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~  157 (364)
T cd05599          82 YLPGGDMMTLLMK--KDTFTEEETRFYIAETILAIDSIHKLG--YIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRT  157 (364)
T ss_pred             CCCCcHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEeccCCHHHeEECCCCCEEEeecccceeccccccc
Confidence            9999999999863  346899999999999999999999998  99999999999999999999999999864321    


Q ss_pred             -------------------------------------------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCC
Q 006019          530 -------------------------------------------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRL  566 (664)
Q Consensus       530 -------------------------------------------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~  566 (664)
                                                                 +...+.+||......++.++|||||||++|||++|+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~G~~  237 (364)
T cd05599         158 EFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGYP  237 (364)
T ss_pred             cccccccccccccccccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHhhcCCC
Confidence                                                       1234567887777778999999999999999999999


Q ss_pred             CccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCC---HHHHHH
Q 006019          567 PYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT---MRDIAA  631 (664)
Q Consensus       567 P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs---~~ev~~  631 (664)
                      ||...  ...+.............   -+...    .....+.+++.+|+. +|.+|++   +.++++
T Consensus       238 Pf~~~--~~~~~~~~i~~~~~~~~---~~~~~----~~s~~~~~li~~ll~-~p~~R~~~~~~~~ll~  295 (364)
T cd05599         238 PFCSD--NPQETYRKIINWKETLQ---FPDEV----PLSPEAKDLIKRLCC-EAERRLGNNGVNEIKS  295 (364)
T ss_pred             CCCCC--CHHHHHHHHHcCCCccC---CCCCC----CCCHHHHHHHHHHcc-CHhhcCCCCCHHHHhc
Confidence            99532  23333333322211111   01101    123467889999996 8999998   887766

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=1.6e-34  Score=319.29  Aligned_cols=243  Identities=19%  Similarity=0.302  Sum_probs=193.3

Q ss_pred             hhhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC------
Q 006019          373 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP------  445 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~------  445 (664)
                      .+.+.||+|+||.||+|+. .+|+.||||.+......   ......+.+|+..+..++|+|++++...+...+.      
T Consensus        35 ~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~---~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~~~~  111 (496)
T PTZ00283         35 WISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMS---EADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNPENV  111 (496)
T ss_pred             EEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCC---HHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCcccc
Confidence            3458899999999999985 46899999998754322   2345678899999999999999999877654321      


Q ss_pred             ceeEEEEEecCCCChhhhhccc--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCc
Q 006019          446 FTRMMVFEYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF  523 (664)
Q Consensus       446 ~~~~lV~Ey~~~GsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGl  523 (664)
                      ...++||||+++|+|.++++..  ....+++.....++.+++.||+|||+.+  |+||||||+|||+++++.+||+|||+
T Consensus       112 ~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~~--IiHrDLKP~NILl~~~~~vkL~DFGl  189 (496)
T PTZ00283        112 LMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKH--MIHRDIKSANILLCSNGLVKLGDFGF  189 (496)
T ss_pred             eEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCC--EecCCCCHHHEEEeCCCCEEEEeccc
Confidence            1357999999999999988643  3456889999999999999999999998  99999999999999999999999999


Q ss_pred             hhhhhh-----------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccc
Q 006019          524 WNEIAM-----------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQF  592 (664)
Q Consensus       524 a~~~~~-----------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~  592 (664)
                      ++....           ....+.+||......++.++|||||||++|||+||+.||.  .....+.......+..     
T Consensus       190 s~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~--~~~~~~~~~~~~~~~~-----  262 (496)
T PTZ00283        190 SKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFD--GENMEEVMHKTLAGRY-----  262 (496)
T ss_pred             CeeccccccccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCC--CCCHHHHHHHHhcCCC-----
Confidence            876432           1234567888877788999999999999999999999994  3344444444433211     


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          593 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       593 ~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                           ...+...+.++.+++.+||+.+|++||++.++++.
T Consensus       263 -----~~~~~~~~~~l~~li~~~L~~dP~~RPs~~ell~~  297 (496)
T PTZ00283        263 -----DPLPPSISPEMQEIVTALLSSDPKRRPSSSKLLNM  297 (496)
T ss_pred             -----CCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHhC
Confidence                 11223334578999999999999999999999764

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.3e-34  Score=307.94  Aligned_cols=241  Identities=21%  Similarity=0.292  Sum_probs=190.6

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. +++.||+|++.......  ......+.+|++++..++|+||+++++++.+.+  ..++||
T Consensus         5 ~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--~~~lv~   80 (350)
T cd05573           5 VIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIK--RNQIAHVRAERDILADADSPWIVKLYYSFQDEE--HLYLVM   80 (350)
T ss_pred             EEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhh--ccHHHHHHHHHHHHHhcCCCCccchhhheecCC--eEEEEE
Confidence            4478999999999999975 68999999987543211  234567899999999999999999999998776  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++|+|.+++...  ..+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....  
T Consensus        81 e~~~~~~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~g--iiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~  156 (350)
T cd05573          81 EYMPGGDLMNLLIRK--DVFPEETARFYIAELVLALDSVHKLG--FIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKD  156 (350)
T ss_pred             cCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCCHHHeEECCCCCEEeecCCCCccCcccCc
Confidence            999999999998643  57899999999999999999999988  999999999999999999999999998755322  


Q ss_pred             ------------------------------------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCC
Q 006019          531 ------------------------------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGS  574 (664)
Q Consensus       531 ------------------------------------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~  574 (664)
                                                          ...+.+||......++.++|||||||++|||+||+.||....  
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~--  234 (350)
T cd05573         157 REYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDT--  234 (350)
T ss_pred             ccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCCCC--
Confidence                                                223456777777788999999999999999999999995332  


Q ss_pred             hHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCC-HHHHHHH
Q 006019          575 LEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT-MRDIAAI  632 (664)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs-~~ev~~~  632 (664)
                      ..+...........   ...+....    ....+.+++.+|++ +|++||+ +.++++.
T Consensus       235 ~~~~~~~i~~~~~~---~~~p~~~~----~~~~~~~li~~ll~-dp~~R~~s~~~ll~h  285 (350)
T cd05573         235 LQETYNKIINWKES---LRFPPDPP----VSPEAIDLICRLLC-DPEDRLGSFEEIKSH  285 (350)
T ss_pred             HHHHHHHHhccCCc---ccCCCCCC----CCHHHHHHHHHHcc-ChhhcCCCHHHHhcC
Confidence            22222222221111   11111111    23568899999997 9999999 9999874

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=100.00  E-value=3.7e-34  Score=290.14  Aligned_cols=238  Identities=24%  Similarity=0.388  Sum_probs=190.9

Q ss_pred             hhhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      .+.+.||+|+||.||+|.. .+..+|+|.+....       ....|.+|+.++++++|||++++++++...+   .++||
T Consensus         9 ~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~~-------~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~---~~~v~   77 (254)
T cd05083           9 TLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCDV-------TAQAFLEETAVMTKLHHKNLVRLLGVILHNG---LYIVM   77 (254)
T ss_pred             eeeeeeccCCCCceEeccc-CCCceEEEeecCcc-------hHHHHHHHHHHHHhCCCCCcCeEEEEEcCCC---cEEEE
Confidence            3458899999999999985 56789999875321       2357899999999999999999999987543   58999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++|+|.+++.......+++..+.+++.+++.|++|||+.+  ++||||||+||+++.++.+||+|||+++.....  
T Consensus        78 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~--~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~~~  155 (254)
T cd05083          78 ELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKK--LVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVD  155 (254)
T ss_pred             ECCCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCC--eeccccCcceEEEcCCCcEEECCCccceeccccCC
Confidence            9999999999997655567899999999999999999999988  999999999999999999999999998754321  


Q ss_pred             ----hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 006019          531 ----EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  605 (664)
Q Consensus       531 ----~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  605 (664)
                          ...+.+||......++.++|||||||++|||++ |+.||..  ....+.......+ ...         ..+...+
T Consensus       156 ~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~--~~~~~~~~~~~~~-~~~---------~~~~~~~  223 (254)
T cd05083         156 NSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPK--MSLKEVKECVEKG-YRM---------EPPEGCP  223 (254)
T ss_pred             CCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCcc--CCHHHHHHHHhCC-CCC---------CCCCcCC
Confidence                223557887777788999999999999999998 9999843  2333333322221 110         0112234


Q ss_pred             HHHHHHHHHhccCCCCCCCCHHHHHHHHHh
Q 006019          606 ETLGELIKSCVRADPEKRPTMRDIAAILRE  635 (664)
Q Consensus       606 ~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~  635 (664)
                      ..+.+++.+||+.+|++||+++++++.|++
T Consensus       224 ~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  253 (254)
T cd05083         224 ADVYVLMTSCWETEPKKRPSFHKLREKLEK  253 (254)
T ss_pred             HHHHHHHHHHcCCChhhCcCHHHHHHHHcc
Confidence            568899999999999999999999998874

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=100.00  E-value=6e-34  Score=288.79  Aligned_cols=240  Identities=19%  Similarity=0.267  Sum_probs=193.3

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||.++. .++..+++|.+......   ....+++.+|++++++++|+||+++++++.+.+  ..+++|
T Consensus         4 ~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~---~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~--~~~~~~   78 (256)
T cd08221           4 PIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLS---EKERRDALNEIVILSLLQHPNIIAYYNHFMDDN--TLLIEM   78 (256)
T ss_pred             EeeEecccCCceEEEEEEcCCCcEEEEEEEeecccc---hhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCC--eEEEEE
Confidence            457899999999999885 45888999988654322   234567899999999999999999999998876  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++|+|.+++.......+++.++..++.+++.|++|||+.+  ++||||+|+||++++++.+||+|||+++.....  
T Consensus        79 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~--i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~  156 (256)
T cd08221          79 EYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKAG--ILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYS  156 (256)
T ss_pred             EecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCC--ccccCCChHhEEEeCCCCEEECcCcceEEcccccc
Confidence            9999999999987554567899999999999999999999998  999999999999999999999999998765322  


Q ss_pred             -------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          531 -------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       531 -------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                             ...+.+||.......+.++||||||+++|||++|+.||..  ....+.......+..          ...+..
T Consensus       157 ~~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~--~~~~~~~~~~~~~~~----------~~~~~~  224 (256)
T cd08221         157 MAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDA--TNPLNLVVKIVQGNY----------TPVVSV  224 (256)
T ss_pred             cccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHcCCC----------CCCccc
Confidence                   2234567776666778899999999999999999999843  333344433332211          111123


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      ...++.+++.+||+.+|++||++.++++.
T Consensus       225 ~~~~~~~~i~~~l~~~p~~R~s~~~ll~~  253 (256)
T cd08221         225 YSSELISLVHSLLQQDPEKRPTADEVLDQ  253 (256)
T ss_pred             cCHHHHHHHHHHcccCcccCCCHHHHhhC
Confidence            34568899999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=100.00  E-value=3.4e-34  Score=290.52  Aligned_cols=239  Identities=19%  Similarity=0.292  Sum_probs=191.5

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||++... ++..+++|.+.....    ....+.+.+|+.++++++|+||+++++++...+  ..++||
T Consensus         4 ~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   77 (255)
T cd08219           4 VLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKS----SSAVEDSRKEAVLLAKMKHPNIVAFKESFEADG--HLYIVM   77 (255)
T ss_pred             EEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcc----hHHHHHHHHHHHHHHhCCCCCcceEEEEEEECC--EEEEEE
Confidence            4578999999999999964 688999998864332    223467889999999999999999999998877  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++|+|.+++.......++......++.+++.|+.|||+.+  ++|+||||+||++++++.++++|||+++.....  
T Consensus        78 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~--i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~  155 (255)
T cd08219          78 EYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKR--VLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGA  155 (255)
T ss_pred             eeCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhCC--cccCCCCcceEEECCCCcEEEcccCcceeeccccc
Confidence            9999999999886555566889999999999999999999998  999999999999999999999999998755321  


Q ss_pred             -------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          531 -------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       531 -------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                             ...+.+||.......+.++||||||+++|||++|+.||..  .+..........+..          ...+..
T Consensus       156 ~~~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~--~~~~~~~~~~~~~~~----------~~~~~~  223 (255)
T cd08219         156 YACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQA--NSWKNLILKVCQGSY----------KPLPSH  223 (255)
T ss_pred             ccccccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCC--CCHHHHHHHHhcCCC----------CCCCcc
Confidence                   1234567877777788999999999999999999999943  222332222222111          111222


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      ....+.+++.+||+.||++||++.+++..
T Consensus       224 ~~~~~~~li~~~l~~~P~~Rp~~~~il~~  252 (255)
T cd08219         224 YSYELRSLIKQMFKRNPRSRPSATTILSR  252 (255)
T ss_pred             cCHHHHHHHHHHHhCCcccCCCHHHHhhc
Confidence            33568899999999999999999998864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=100.00  E-value=4.2e-34  Score=295.08  Aligned_cols=242  Identities=19%  Similarity=0.226  Sum_probs=187.4

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||+|... +++.+|+|.+.......  ......+.+|++++++++|+||+++.+++...+  ..++|||
T Consensus         5 ~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~--~~~lv~e   80 (285)
T cd05632           5 YRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKK--RKGESMALNEKQILEKVNSQFVVNLAYAYETKD--ALCLVLT   80 (285)
T ss_pred             EEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhh--hhHHHHHHHHHHHHHHcCCcCceeEEEEEecCC--EEEEEEE
Confidence            367999999999999964 68899999886543221  223456788999999999999999999988776  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|+|.+++.......+++.....++.|++.||.|||+.+  |+||||||+||++++++.+||+|||+++....    
T Consensus        81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~--iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~  158 (285)
T cd05632          81 IMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHREN--TVYRDLKPENILLDDYGHIRISDLGLAVKIPEGESI  158 (285)
T ss_pred             eccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeecCCCHHHEEECCCCCEEEecCCcceecCCCCcc
Confidence            999999998886544557999999999999999999999988  99999999999999999999999998865421    


Q ss_pred             ----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 006019          530 ----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  605 (664)
Q Consensus       530 ----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  605 (664)
                          ....+.+||......++.++|||||||++|||+||+.||.....  ................       .++....
T Consensus       159 ~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~--~~~~~~~~~~~~~~~~-------~~~~~~~  229 (285)
T cd05632         159 RGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKE--KVKREEVDRRVLETEE-------VYSAKFS  229 (285)
T ss_pred             cCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHHhhhcccc-------ccCccCC
Confidence                12345578887777889999999999999999999999953221  1111111111000011       1122233


Q ss_pred             HHHHHHHHHhccCCCCCCCC-----HHHHHH
Q 006019          606 ETLGELIKSCVRADPEKRPT-----MRDIAA  631 (664)
Q Consensus       606 ~~l~~l~~~Cl~~~P~~RPs-----~~ev~~  631 (664)
                      ..+.+++.+||+.||++||+     +.+++.
T Consensus       230 ~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~  260 (285)
T cd05632         230 EEAKSICKMLLTKDPKQRLGCQEEGAGEVKR  260 (285)
T ss_pred             HHHHHHHHHHccCCHhHcCCCcccChHHHHc
Confidence            56789999999999999999     556655

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=100.00  E-value=2.1e-34  Score=294.40  Aligned_cols=243  Identities=18%  Similarity=0.252  Sum_probs=185.2

Q ss_pred             HHHhhhh--cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC
Q 006019          369 AACEDFS--NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP  445 (664)
Q Consensus       369 ~~~~~~~--~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  445 (664)
                      .+++++.  ..||+|+||.||+|+.. ++..+++|.+....     ....+.+.+|++++++++|+||+++++++...+ 
T Consensus         5 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~-----~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-   78 (268)
T cd06624           5 YEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERD-----SRYVQPLHEEIALHSYLKHRNIVQYLGSDSENG-   78 (268)
T ss_pred             cccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCC-----HHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCC-
Confidence            3344443  68999999999999954 57789999875432     234567999999999999999999999998876 


Q ss_pred             ceeEEEEEecCCCChhhhhcccCCCCC--CHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecC-CCceEecccC
Q 006019          446 FTRMMVFEYAPNGTLFEHIHIKESEHL--DWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE-DYAAKLSDLS  522 (664)
Q Consensus       446 ~~~~lV~Ey~~~GsL~~~l~~~~~~~l--~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~-~~~~kl~DfG  522 (664)
                       ..++|+||+++++|.++++... ..+  ++..+..++.+++.|++|||+.+  |+||||||+||+++. ++.+||+|||
T Consensus        79 -~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~~qi~~al~~lH~~~--i~h~dl~p~nil~~~~~~~~~l~dfg  154 (268)
T cd06624          79 -FFKIFMEQVPGGSLSALLRSKW-GPLKDNEQTIIFYTKQILEGLKYLHDNQ--IVHRDIKGDNVLVNTYSGVVKISDFG  154 (268)
T ss_pred             -EEEEEEecCCCCCHHHHHHHhc-ccCCCcHHHHHHHHHHHHHHHHHHHHCC--EeecCCCHHHEEEcCCCCeEEEecch
Confidence             6799999999999999987432 234  78888999999999999999988  999999999999986 6799999999


Q ss_pred             chhhhhh---------hhhhcccccccCCC--CCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCcc
Q 006019          523 FWNEIAM---------AEMAATSKKLSSAP--SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQ  591 (664)
Q Consensus       523 la~~~~~---------~~~~~~~pe~~~~~--~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~  591 (664)
                      ++.....         ....+.+||+....  .++.++|||||||++|||++|+.||................       
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~~~~~~~~~~-------  227 (268)
T cd06624         155 TSKRLAGINPCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGEPQAAMFKVGMF-------  227 (268)
T ss_pred             hheecccCCCccccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccccChhhhHhhhhhh-------
Confidence            8865421         12234567765432  36889999999999999999999985322111111110000       


Q ss_pred             ccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          592 FVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       592 ~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                         ......+.....++.+++.+||+.+|++||++.+++.
T Consensus       228 ---~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~  264 (268)
T cd06624         228 ---KIHPEIPESLSAEAKNFILRCFEPDPDKRASAHDLLQ  264 (268)
T ss_pred             ---ccCCCCCcccCHHHHHHHHHHcCCCchhCCCHHHHHh
Confidence               0011123334467889999999999999999999875

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=9.4e-35  Score=307.37  Aligned_cols=251  Identities=18%  Similarity=0.209  Sum_probs=182.9

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC---ceeE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP---FTRM  449 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~---~~~~  449 (664)
                      +.+.||+|+||.||+|+.. ++..||||++......   ......+.+|++++++++||||+++++++.....   ...+
T Consensus         4 i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~   80 (338)
T cd07859           4 IQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEH---VSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIY   80 (338)
T ss_pred             EEEEEeecCCeEEEEEEECCCCCEEEEEEechhhcc---chhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEE
Confidence            4578999999999999964 6899999988643221   1234578899999999999999999999864331   1469


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                      +||||+. ++|.+++..  ...+++..+..++.|++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....
T Consensus        81 lv~e~~~-~~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~~  155 (338)
T cd07859          81 VVFELME-SDLHQVIKA--NDDLTPEHHQFFLYQLLRALKYIHTAN--VFHRDLKPKNILANADCKLKICDFGLARVAFN  155 (338)
T ss_pred             EEEecCC-CCHHHHHHh--cccCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHeEECCCCcEEEccCcccccccc
Confidence            9999995 689888853  346899999999999999999999998  99999999999999999999999999875421


Q ss_pred             ------------hhhhcccccccCC--CCCCcCCcchhhHHHHHHHHhCCCCccCCCC-ChHHHHHHHhcCC--------
Q 006019          530 ------------AEMAATSKKLSSA--PSASLESNVYNFGVLLFEMVTGRLPYLVDNG-SLEDWAADYLSGV--------  586 (664)
Q Consensus       530 ------------~~~~~~~pe~~~~--~~~s~ksDVySfGvvl~El~tG~~P~~~~~~-~~~~~~~~~~~~~--------  586 (664)
                                  ....+.+||....  ..++.++|||||||++|||+||+.||..... ...+.+.......        
T Consensus       156 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i  235 (338)
T cd07859         156 DTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLITDLLGTPSPETISRV  235 (338)
T ss_pred             ccCccccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHh
Confidence                        1223456776543  5678899999999999999999999953221 0001110000000        


Q ss_pred             --CC----CccccCC---CCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          587 --QP----LQQFVDP---TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       587 --~~----~~~~~d~---~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                        ..    ...+...   ............+.+++.+||+.||++||+++|+++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l~h  290 (338)
T cd07859         236 RNEKARRYLSSMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALAD  290 (338)
T ss_pred             hhhhHHHHHHhhcccCCCchHHhcCCCChHHHHHHHHHcCcCcccCCCHHHHhcC
Confidence              00    0000000   0000001123457899999999999999999999864

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=1.4e-34  Score=305.12  Aligned_cols=241  Identities=18%  Similarity=0.263  Sum_probs=188.4

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+++.. ++..+|+|++.......  ....+.+.+|+.+++.++|+||+++++++.+.+  ..++||
T Consensus         5 ~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~--~~~lv~   80 (330)
T cd05601           5 VKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLA--QETVSFFEEERDILSISNSPWIPQLQYAFQDKD--NLYLVM   80 (330)
T ss_pred             EEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHHhCCCCCCcceeeEEecCC--eEEEEE
Confidence            4578999999999999964 68899999987543211  234567889999999999999999999998776  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++|+|.+++... ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....   
T Consensus        81 e~~~~~~L~~~l~~~-~~~l~~~~~~~~~~qi~~aL~~lH~~~--i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~  157 (330)
T cd05601          81 EYQPGGDLLSLLNRY-EDQFDEDMAQFYLAELVLAIHSVHQMG--YVHRDIKPENVLIDRTGHIKLADFGSAARLTANKM  157 (330)
T ss_pred             CCCCCCCHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEcccCchHheEECCCCCEEeccCCCCeECCCCCc
Confidence            999999999998632 356899999999999999999999998  99999999999999999999999999875532   


Q ss_pred             -------hhhhcccccccC------CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCC
Q 006019          530 -------AEMAATSKKLSS------APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  596 (664)
Q Consensus       530 -------~~~~~~~pe~~~------~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  596 (664)
                             ....+.+||...      ...++.++|||||||++|||+||+.||..  ....+............ ..  +.
T Consensus       158 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~--~~~~~~~~~i~~~~~~~-~~--~~  232 (330)
T cd05601         158 VNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHE--GTSAKTYNNIMNFQRFL-KF--PE  232 (330)
T ss_pred             eeeecccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCCC--CCHHHHHHHHHcCCCcc-CC--CC
Confidence                   123455677654      44578899999999999999999999943  22233333333221111 00  11


Q ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          597 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       597 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                          .......+.+++.+|++ +|++||++.++++
T Consensus       233 ----~~~~~~~~~~li~~ll~-~p~~R~t~~~l~~  262 (330)
T cd05601         233 ----DPKVSSDFLDLIQSLLC-GQKERLGYEGLCC  262 (330)
T ss_pred             ----CCCCCHHHHHHHHHHcc-ChhhCCCHHHHhC
Confidence                11223568899999997 9999999999875

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=7.8e-34  Score=291.99  Aligned_cols=244  Identities=18%  Similarity=0.297  Sum_probs=193.4

Q ss_pred             hhcccccCCCeEEEEEEECC-Cc----EEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          374 FSNVIGSSPIGTVYKGTLSN-GV----EIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~-~~----~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      +.+.||+|+||.||+|.+.+ |.    .+|+|.......    .....++.+|++++++++|+||++++++|.. .  ..
T Consensus        11 ~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~--~~   83 (279)
T cd05057          11 KIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETS----PKANKEILDEAYVMASVDHPHVVRLLGICLS-S--QV   83 (279)
T ss_pred             EcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCC----HHHHHHHHHHHHHHHhCCCCCcceEEEEEec-C--ce
Confidence            45789999999999999643 32    577777643321    3345679999999999999999999999986 3  56


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++|+||+++|+|.++++.. ...+++....+++.+++.|++|||+++  ++||||||+||++++++.+||+|||+++...
T Consensus        84 ~~v~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~LH~~~--i~H~di~p~nil~~~~~~~kL~dfg~~~~~~  160 (279)
T cd05057          84 QLITQLMPLGCLLDYVRNH-KDNIGSQYLLNWCVQIAKGMSYLEEKR--LVHRDLAARNVLVKTPQHVKITDFGLAKLLD  160 (279)
T ss_pred             EEEEecCCCCcHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHhCC--EEecccCcceEEEcCCCeEEECCCccccccc
Confidence            8999999999999998743 345899999999999999999999988  9999999999999999999999999987653


Q ss_pred             hhh-----------hhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCC
Q 006019          529 MAE-----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  596 (664)
Q Consensus       529 ~~~-----------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  596 (664)
                      ...           ..+.+||......++.++||||||+++||++| |+.||..  ....++....... ...       
T Consensus       161 ~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~--~~~~~~~~~~~~~-~~~-------  230 (279)
T cd05057         161 VDEKEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEG--IPAVEIPDLLEKG-ERL-------  230 (279)
T ss_pred             CcccceecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCC--CCHHHHHHHHhCC-CCC-------
Confidence            211           23456776666778899999999999999999 9999843  2334444333322 110       


Q ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          597 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       597 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                        ..+..+...+.+++.+||..+|++||++.++++.|+++...
T Consensus       231 --~~~~~~~~~~~~~~~~~l~~~p~~Rp~~~~l~~~l~~~~~~  271 (279)
T cd05057         231 --PQPPICTIDVYMVLVKCWMIDAESRPTFKELINEFSKMARD  271 (279)
T ss_pred             --CCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhC
Confidence              11122234688999999999999999999999999998664

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=3.6e-34  Score=299.93  Aligned_cols=234  Identities=19%  Similarity=0.253  Sum_probs=183.1

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhc-cCCCcccceEEEEecCCCceeEEEEE
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSK-VNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~-l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.||+|+||.||+|+.. ++..||+|.+.......  ......+..|..++.. .+||||+++++++.+.+  ..++|||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~--~~~lv~e   76 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLM--DDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKE--NLFFVME   76 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhh--cchHHHHHHHHHHHHhccCCCcCcceEEEEEeCC--EEEEEEe
Confidence            36999999999999975 47889999987543211  1223456778888876 48999999999998877  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....    
T Consensus        77 y~~~g~L~~~l~~--~~~~~~~~~~~~~~qi~~al~~LH~~~--ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~  152 (316)
T cd05619          77 YLNGGDLMFHIQS--CHKFDLPRATFYAAEIICGLQFLHSKG--IVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAK  152 (316)
T ss_pred             CCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHhCC--eEeCCCCHHHEEECCCCCEEEccCCcceECCCCCCc
Confidence            9999999998863  356889999999999999999999998  99999999999999999999999999874311    


Q ss_pred             -----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          530 -----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       530 -----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                           ....+.+||......++.++|||||||++|||+||+.||...  ...+.........        +.   ++...
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~--~~~~~~~~i~~~~--------~~---~~~~~  219 (316)
T cd05619         153 TCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGH--DEEELFQSIRMDN--------PC---YPRWL  219 (316)
T ss_pred             eeeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCC--CHHHHHHHHHhCC--------CC---CCccC
Confidence                 123456788877778899999999999999999999999432  2233222222111        11   11123


Q ss_pred             HHHHHHHHHHhccCCCCCCCCHH-HHH
Q 006019          605 LETLGELIKSCVRADPEKRPTMR-DIA  630 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RPs~~-ev~  630 (664)
                      ..++.+++.+||+.||++||++. ++.
T Consensus       220 ~~~~~~li~~~l~~~P~~R~~~~~~l~  246 (316)
T cd05619         220 TREAKDILVKLFVREPERRLGVKGDIR  246 (316)
T ss_pred             CHHHHHHHHHHhccCHhhcCCChHHHH
Confidence            35688999999999999999997 554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=2.6e-34  Score=299.35  Aligned_cols=247  Identities=17%  Similarity=0.230  Sum_probs=182.8

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. ++..+|+|++.......    ....+.+|++++++++||||+++++++...+  ..++||
T Consensus         9 ~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~--~~~lv~   82 (303)
T cd07869           9 KLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEG----TPFTAIREASLLKGLKHANIVLLHDIIHTKE--TLTLVF   82 (303)
T ss_pred             EeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccc----cchhHHHHHHHHhhCCCCCcCeEEEEEecCC--eEEEEE
Confidence            3478999999999999975 68899999986543221    2346788999999999999999999998776  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||++ ++|.+++.. ....+++.....++.+++.||+|||+.+  |+||||||+|||+++++.+||+|||+++....   
T Consensus        83 e~~~-~~l~~~~~~-~~~~~~~~~~~~~~~qi~~al~~lH~~~--ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~  158 (303)
T cd07869          83 EYVH-TDLCQYMDK-HPGGLHPENVKLFLFQLLRGLSYIHQRY--ILHRDLKPQNLLISDTGELKLADFGLARAKSVPSH  158 (303)
T ss_pred             ECCC-cCHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEECCCCCEEECCCCcceeccCCCc
Confidence            9996 688887753 3356888899999999999999999998  99999999999999999999999999865421   


Q ss_pred             ------hhhhcccccccC-CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhc---CC--C------CCcc
Q 006019          530 ------AEMAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLS---GV--Q------PLQQ  591 (664)
Q Consensus       530 ------~~~~~~~pe~~~-~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~---~~--~------~~~~  591 (664)
                            ....+.+||... ...++.++|||||||++|||+||+.||.... +..+.......   ..  .      ....
T Consensus       159 ~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (303)
T cd07869         159 TYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMK-DIQDQLERIFLVLGTPNEDTWPGVHSLPH  237 (303)
T ss_pred             cCCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCc-cHHHHHHHHHHHhCCCChhhccchhhccc
Confidence                  123355677654 3457889999999999999999999995322 22222111110   00  0      0000


Q ss_pred             ccCCCCCCC-CH---------HHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          592 FVDPTLSSF-DE---------EQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       592 ~~d~~~~~~-~~---------~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ......... +.         .....+.+++.+|++.||++|||+.|+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R~s~~~~l~  287 (303)
T cd07869         238 FKPERFTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALS  287 (303)
T ss_pred             cccccccccCCccHHHHhhccCCChHHHHHHHHHhccCchhccCHHHHhc
Confidence            000000000 00         01245789999999999999999998875

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-34  Score=325.02  Aligned_cols=256  Identities=23%  Similarity=0.357  Sum_probs=204.5

Q ss_pred             HHHHHHHHhhhhcccccCCCeEEEEEEEC--------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCccc
Q 006019          364 RSELEAACEDFSNVIGSSPIGTVYKGTLS--------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFV  434 (664)
Q Consensus       364 ~~el~~~~~~~~~~iG~G~~G~Vy~g~~~--------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv  434 (664)
                      ..|+.+..-.+.+.+|+|.||.|++|.+.        ....||||.++....    ....+.+..|+++|+.+ +|+||+
T Consensus       290 ~~e~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~----~~~~~~~~~El~~m~~~g~H~niv  365 (609)
T KOG0200|consen  290 KWEIPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENAS----SSEKKDLMSELNVLKELGKHPNIV  365 (609)
T ss_pred             ceeechhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccC----cHHHHHHHHHHHHHHHhcCCcchh
Confidence            44555544456679999999999999853        145788988864432    23567899999999998 599999


Q ss_pred             ceEEEEecCCCceeEEEEEecCCCChhhhhcccC------C--------CCCCHHHHHHHHHHHHHHHHHhhcCCCCeEE
Q 006019          435 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE------S--------EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAH  500 (664)
Q Consensus       435 ~l~g~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~------~--------~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivH  500 (664)
                      .++|+|...+  ..++|.||++.|+|.++|+.+.      .        ..++....+.++.|||.|++||++..  +||
T Consensus       366 ~llG~~t~~~--~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~--~vH  441 (609)
T KOG0200|consen  366 NLLGACTQDG--PLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASVP--CVH  441 (609)
T ss_pred             hheeeeccCC--ceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhCC--ccc
Confidence            9999999866  5699999999999999997543      0        23888999999999999999999988  999


Q ss_pred             eCcCCCCeEecCCCceEecccCchhhhhhh------------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCC
Q 006019          501 NYLNSSAVHLTEDYAAKLSDLSFWNEIAMA------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLP  567 (664)
Q Consensus       501 rDLk~~NILld~~~~~kl~DfGla~~~~~~------------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P  567 (664)
                      |||.++|||+.++..+||+|||++|.....            ...+.+||-.....++.|||||||||+||||+| |..|
T Consensus       442 RDLAaRNVLi~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~P  521 (609)
T KOG0200|consen  442 RDLAARNVLITKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTP  521 (609)
T ss_pred             hhhhhhhEEecCCCEEEEccccceeccCCCCceEecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCC
Confidence            999999999999999999999999854321            223556777777889999999999999999999 9999


Q ss_pred             ccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          568 YLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       568 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      |.+ -....+... .+..         ......|..|..+++++|+.||+.+|++||+|.++++.|+..+.
T Consensus       522 Yp~-~~~~~~l~~-~l~~---------G~r~~~P~~c~~eiY~iM~~CW~~~p~~RP~F~~~~~~~~~~l~  581 (609)
T KOG0200|consen  522 YPG-IPPTEELLE-FLKE---------GNRMEQPEHCSDEIYDLMKSCWNADPEDRPTFSECVEFFEKHLQ  581 (609)
T ss_pred             CCC-CCcHHHHHH-HHhc---------CCCCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHH
Confidence            943 111222222 2222         12234466677889999999999999999999999999999653

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=100.00  E-value=5.8e-34  Score=288.89  Aligned_cols=239  Identities=19%  Similarity=0.328  Sum_probs=193.8

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+++. .+++.+++|.+......   ....+++.+|++++++++|+||+++++++.+.+  ..++|+
T Consensus         4 ~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~lv~   78 (256)
T cd08218           4 KVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMS---PKEREESRKEVAVLSNMKHPNIVQYQESFEENG--NLYIVM   78 (256)
T ss_pred             EEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCC---hHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCC--eEEEEE
Confidence            457899999999999985 46889999998654322   234468999999999999999999999998776  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++++|.++++......+++.++.+++.+++.|++|||+++  ++|+||+|+||+++.++.++|+|||++......  
T Consensus        79 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~--i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~  156 (256)
T cd08218          79 DYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDRK--ILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVE  156 (256)
T ss_pred             ecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCC--EecCCCCHHHEEEcCCCCEEEeeccceeecCcchh
Confidence            9999999999987555556899999999999999999999998  999999999999999999999999998755321  


Q ss_pred             -------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          531 -------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       531 -------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                             ...+.+||.......+.++|||||||+++||+||+.||..  ....+.......+..          ...+..
T Consensus       157 ~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~--~~~~~~~~~~~~~~~----------~~~~~~  224 (256)
T cd08218         157 LARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEA--GNMKNLVLKIIRGSY----------PPVSSH  224 (256)
T ss_pred             hhhhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccC--CCHHHHHHHHhcCCC----------CCCccc
Confidence                   1234567877777788999999999999999999999843  334444444333211          111223


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ....+.+++.+||+.+|++||+|.+|++
T Consensus       225 ~~~~~~~li~~~l~~~p~~Rp~~~~vl~  252 (256)
T cd08218         225 YSYDLRNLVSQLFKRNPRDRPSVNSILE  252 (256)
T ss_pred             CCHHHHHHHHHHhhCChhhCcCHHHHhh
Confidence            3456899999999999999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=4.4e-34  Score=305.33  Aligned_cols=241  Identities=17%  Similarity=0.238  Sum_probs=183.2

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||+++.. +++.+|+|++.......  ......+.+|++++.+++|+||+++++++.+..  ..++|||
T Consensus         6 ~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~--~~~lv~E   81 (363)
T cd05628           6 LKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLE--KEQVGHIRAERDILVEADSLWVVKMFYSFQDKL--NLYLIME   81 (363)
T ss_pred             eEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHH--hhHHHHHHHHHHHHHhCCCCCcceEEEEEecCC--eEEEEEc
Confidence            478999999999999864 58899999986533211  233457889999999999999999999998876  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....    
T Consensus        82 ~~~gg~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~lH~~g--ivHrDlKp~NILi~~~~~vkL~DFGla~~~~~~~~~  157 (363)
T cd05628          82 FLPGGDMMTLLMK--KDTLTEEETQFYIAETVLAIDSIHQLG--FIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRT  157 (363)
T ss_pred             CCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCC--eEecCCCHHHeEECCCCCEEEeeccCcccccccccc
Confidence            9999999999863  356899999999999999999999998  99999999999999999999999999864321    


Q ss_pred             ----------------------------------------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCcc
Q 006019          530 ----------------------------------------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYL  569 (664)
Q Consensus       530 ----------------------------------------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~  569 (664)
                                                              +...+.+||......++.++|||||||++|||+||+.||.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~~Pf~  237 (363)
T cd05628         158 EFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFC  237 (363)
T ss_pred             cccccccccccccccccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCCCCCC
Confidence                                                    1223457787777778999999999999999999999994


Q ss_pred             CCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHH--hccCCCCCCCCHHHHHHH
Q 006019          570 VDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKS--CVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~--Cl~~~P~~RPs~~ev~~~  632 (664)
                      ..  ...+............   ..+......    .++.+++.+  |...++..||++.||++.
T Consensus       238 ~~--~~~~~~~~i~~~~~~~---~~p~~~~~s----~~~~~li~~l~~~~~~r~~r~~~~ei~~h  293 (363)
T cd05628         238 SE--TPQETYKKVMNWKETL---IFPPEVPIS----EKAKDLILRFCCEWEHRIGAPGVEEIKTN  293 (363)
T ss_pred             CC--CHHHHHHHHHcCcCcc---cCCCcCCCC----HHHHHHHHHHcCChhhcCCCCCHHHHhCC
Confidence            32  2333333333211111   111111122    345666665  433445567999999875

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=100.00  E-value=8.2e-34  Score=289.72  Aligned_cols=241  Identities=16%  Similarity=0.248  Sum_probs=185.7

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||+|... ++..+++|++...............+.+|++++++++||||+++++++.+......++++|
T Consensus         7 ~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l~~e   86 (266)
T cd06651           7 GKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTLTIFME   86 (266)
T ss_pred             cceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEEEEEEe
Confidence            478999999999999864 5889999988654433222334567899999999999999999999987643336789999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++++|.+++..  ...+++.....++.+++.||+|||+++  ++||||||+||+++.++.+||+|||+++....    
T Consensus        87 ~~~~~~L~~~l~~--~~~l~~~~~~~~~~qi~~~l~~LH~~~--i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~~~~~  162 (266)
T cd06651          87 YMPGGSVKDQLKA--YGALTESVTRKYTRQILEGMSYLHSNM--IVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMS  162 (266)
T ss_pred             CCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHhCC--eeeCCCCHHHEEECCCCCEEEccCCCcccccccccc
Confidence            9999999999863  345889999999999999999999988  99999999999999999999999999875421    


Q ss_pred             --------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 006019          530 --------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  601 (664)
Q Consensus       530 --------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  601 (664)
                              ....+.+||.......+.++|||||||++|||+||+.||...  ...+.........      ..+   ..+
T Consensus       163 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~--~~~~~~~~~~~~~------~~~---~~~  231 (266)
T cd06651         163 GTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEY--EAMAAIFKIATQP------TNP---QLP  231 (266)
T ss_pred             CCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCcccc--chHHHHHHHhcCC------CCC---CCc
Confidence                    112345678777777889999999999999999999999422  2222222211110      011   122


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          602 EEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       602 ~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ......+.+++ +||..+|++||+|+||++
T Consensus       232 ~~~~~~~~~li-~~~~~~p~~Rp~~~eil~  260 (266)
T cd06651         232 SHISEHARDFL-GCIFVEARHRPSAEELLR  260 (266)
T ss_pred             hhcCHHHHHHH-HHhcCChhhCcCHHHHhc
Confidence            23334566666 788899999999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=100.00  E-value=7.2e-34  Score=288.43  Aligned_cols=239  Identities=28%  Similarity=0.416  Sum_probs=193.2

Q ss_pred             cccccCCCeEEEEEEECC----CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          376 NVIGSSPIGTVYKGTLSN----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~----~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.||+|+||.||+|....    +..+++|.+......    ...+.+.+|++.++.++|+||+++++++....  ..++|
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~----~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--~~~lv   74 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASE----EERKDFLKEARVMKKLGHPNVVRLLGVCTEEE--PLYLV   74 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccch----hHHHHHHHHHHHHhhcCCCChheeeeeecCCC--ceEEE
Confidence            469999999999999754    788999988644321    13578999999999999999999999998866  67999


Q ss_pred             EEecCCCChhhhhcccC-------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCch
Q 006019          452 FEYAPNGTLFEHIHIKE-------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW  524 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~-------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla  524 (664)
                      |||+++|+|.+++....       ...+++..+.+++.+++.|++|||+.+  ++||||||+||++++++.+||+|||.+
T Consensus        75 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~--i~H~di~p~nili~~~~~~~l~dfg~~  152 (262)
T cd00192          75 LEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKK--FVHRDLAARNCLVGEDLVVKISDFGLS  152 (262)
T ss_pred             EEeccCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcCC--cccCccCcceEEECCCCcEEEcccccc
Confidence            99999999999987531       367999999999999999999999988  999999999999999999999999998


Q ss_pred             hhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccc
Q 006019          525 NEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQF  592 (664)
Q Consensus       525 ~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~  592 (664)
                      +.....           ...+.+||......++.++||||+|++++||++ |+.||...  ...+........ .     
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~--~~~~~~~~~~~~-~-----  224 (262)
T cd00192         153 RDVYDDDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGL--SNEEVLEYLRKG-Y-----  224 (262)
T ss_pred             cccccccccccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHHcC-C-----
Confidence            866432           123456787766678999999999999999999 69998432  333333322221 1     


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 006019          593 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR  634 (664)
Q Consensus       593 ~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~  634 (664)
                          ....+...+.++.+++.+||+.+|++||++.++++.|+
T Consensus       225 ----~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~  262 (262)
T cd00192         225 ----RLPKPEYCPDELYELMLSCWQLDPEDRPTFSELVERLE  262 (262)
T ss_pred             ----CCCCCccCChHHHHHHHHHccCCcccCcCHHHHHHhhC
Confidence                11122333567899999999999999999999998874

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=100.00  E-value=2.9e-34  Score=294.91  Aligned_cols=236  Identities=17%  Similarity=0.262  Sum_probs=187.8

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      ..+.||+|+||.||+|... ++..||+|.+.....    ....+.+.+|++++++++||||+++++++....  ..++||
T Consensus         8 ~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   81 (277)
T cd06642           8 KLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEA----EDEIEDIQQEITVLSQCDSPYITRYYGSYLKGT--KLWIIM   81 (277)
T ss_pred             HHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccc----hHHHHHHHHHHHHHHcCCCCccHhhhcccccCC--ceEEEE
Confidence            3467999999999999864 578899998754322    234567999999999999999999999998766  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++++|.+++..   ..+++..+..++.+++.|+.|||+.+  ++|+||+|+||++++++.+|++|||+++.....  
T Consensus        82 e~~~~~~L~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~--ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~  156 (277)
T cd06642          82 EYLGGGSALDLLKP---GPLEETYIATILREILKGLDYLHSER--KIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQI  156 (277)
T ss_pred             EccCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHhcCC--eeccCCChheEEEeCCCCEEEccccccccccCcch
Confidence            99999999998853   46899999999999999999999988  999999999999999999999999998765321  


Q ss_pred             -------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          531 -------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       531 -------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                             ...+.+||+.....++.++|||||||++|||+||+.|+....  ...........       ..+   .....
T Consensus       157 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~--~~~~~~~~~~~-------~~~---~~~~~  224 (277)
T cd06642         157 KRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLH--PMRVLFLIPKN-------SPP---TLEGQ  224 (277)
T ss_pred             hhhcccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccc--hhhHHhhhhcC-------CCC---CCCcc
Confidence                   223457887777778999999999999999999999984221  11111111100       011   12223


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      .+..+.+++.+||+.+|++||+|.++++.
T Consensus       225 ~~~~~~~li~~~l~~~p~~Rp~~~~il~~  253 (277)
T cd06642         225 YSKPFKEFVEACLNKDPRFRPTAKELLKH  253 (277)
T ss_pred             cCHHHHHHHHHHccCCcccCcCHHHHHHh
Confidence            44668899999999999999999999983

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=100.00  E-value=2.7e-34  Score=326.15  Aligned_cols=252  Identities=17%  Similarity=0.236  Sum_probs=195.0

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.++||+|+||.||+|+.. +++.||+|++.......  ....++|.+|++++++++||||+++++++.+.+  ..++||
T Consensus         6 Ii~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~--e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~--~lyLVM   81 (932)
T PRK13184          6 IIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSEN--PLLKKRFLREAKIAADLIHPGIVPVYSICSDGD--PVYYTM   81 (932)
T ss_pred             EEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccC--HHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCC--EEEEEE
Confidence            3478999999999999965 58899999986433221  344568999999999999999999999998877  679999


Q ss_pred             EecCCCChhhhhccc---------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCc
Q 006019          453 EYAPNGTLFEHIHIK---------ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF  523 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~---------~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGl  523 (664)
                      ||+++|+|.+++...         ....+++....+++.++++||+|||+.+  |+||||||+|||++.++.+||+|||+
T Consensus        82 EY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~G--IIHRDLKPeNILLd~dg~vKLiDFGL  159 (932)
T PRK13184         82 PYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSKG--VLHRDLKPDNILLGLFGEVVILDWGA  159 (932)
T ss_pred             EcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHCC--ccccCCchheEEEcCCCCEEEEecCc
Confidence            999999999988531         1234677888999999999999999998  99999999999999999999999999


Q ss_pred             hhhhhh---------------------------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChH
Q 006019          524 WNEIAM---------------------------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLE  576 (664)
Q Consensus       524 a~~~~~---------------------------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~  576 (664)
                      ++....                           +...+.+||...+..++.++|||||||++|||+||+.||........
T Consensus       160 Ak~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~~ki  239 (932)
T PRK13184        160 AIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRKKGRKI  239 (932)
T ss_pred             ceecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcchhhh
Confidence            876510                           12234567877777789999999999999999999999953221110


Q ss_pred             HHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCC-CCHHHHHHHHHhhhCCCC
Q 006019          577 DWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKR-PTMRDIAAILREITGITP  641 (664)
Q Consensus       577 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~R-Ps~~ev~~~L~~i~~~~~  641 (664)
                      .. ....         .++.......+.+..+.+++.+|++.||++| ++++++.+.|+......+
T Consensus       240 ~~-~~~i---------~~P~~~~p~~~iP~~L~~LI~rcL~~DP~kR~ss~eeLl~~Le~~lq~~p  295 (932)
T PRK13184        240 SY-RDVI---------LSPIEVAPYREIPPFLSQIAMKALAVDPAERYSSVQELKQDLEPHLQGSP  295 (932)
T ss_pred             hh-hhhc---------cChhhccccccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhcCc
Confidence            00 0000         1110000011233568899999999999999 478889999998876544

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=100.00  E-value=3e-34  Score=290.08  Aligned_cols=239  Identities=26%  Similarity=0.402  Sum_probs=191.5

Q ss_pred             cccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEec
Q 006019          376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYA  455 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey~  455 (664)
                      ++||+|+||.||++...+++.+++|.+.....    ......|.+|++++++++|+||+++++++.+.+  ..++|+||+
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~----~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~~v~e~~   74 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLP----PDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQ--PIYIVMELV   74 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCC----HHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCC--CeEEEEEcC
Confidence            36999999999999987799999998764322    234568999999999999999999999998776  679999999


Q ss_pred             CCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh-----
Q 006019          456 PNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-----  530 (664)
Q Consensus       456 ~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~-----  530 (664)
                      ++++|.++++.. ...+++.....++.+++.|++|||+.+  ++||||||+||+++.++.+||+|||+++.....     
T Consensus        75 ~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~l~~lH~~~--i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~  151 (251)
T cd05041          75 PGGSLLTFLRKK-KNRLTVKKLLQMSLDAAAGMEYLESKN--CIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVS  151 (251)
T ss_pred             CCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhCC--EehhhcCcceEEEcCCCcEEEeeccccccccCCcceec
Confidence            999999998643 346889999999999999999999998  999999999999999999999999998754310     


Q ss_pred             ------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          531 ------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       531 ------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                            ...+.+||......++.++|||||||++|||+| |..||....  ........... .   ..      ..+..
T Consensus       152 ~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~--~~~~~~~~~~~-~---~~------~~~~~  219 (251)
T cd05041         152 DGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMS--NQQTRERIESG-Y---RM------PAPQL  219 (251)
T ss_pred             cccCcceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCC--HHHHHHHHhcC-C---CC------CCCcc
Confidence                  123567887777778999999999999999999 888884221  22222221111 0   00      11223


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHHHHHh
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAAILRE  635 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~  635 (664)
                      .+.++.+++.+||+.+|++||++.|+++.|++
T Consensus       220 ~~~~~~~li~~~l~~~p~~Rp~~~ell~~l~~  251 (251)
T cd05041         220 CPEEIYRLMLQCWAYDPENRPSFSEIYNELQI  251 (251)
T ss_pred             CCHHHHHHHHHHhccChhhCcCHHHHHHHhhC
Confidence            34579999999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=3.7e-34  Score=299.92  Aligned_cols=234  Identities=19%  Similarity=0.248  Sum_probs=182.9

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhc-cCCCcccceEEEEecCCCceeEEEEE
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSK-VNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~-l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.||+|+||.||+|+.. +|..||+|.+.......  ......+..|..++.. .+||||+++++++...+  ..++|||
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~--~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~--~~~lv~E   76 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLI--DDDVECTMVEKRVLALAWENPFLTHLYCTFQTKE--HLFFVME   76 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh--cchHHHHHHHHHHHHhccCCCCccCeeEEEEeCC--EEEEEEC
Confidence            36999999999999975 58899999987543211  1223456778888775 48999999999998876  7799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....    
T Consensus        77 ~~~~g~L~~~i~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~  152 (316)
T cd05620          77 FLNGGDLMFHIQD--KGRFDLYRATFYAAEIVCGLQFLHSKG--IIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNR  152 (316)
T ss_pred             CCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEecCCCHHHeEECCCCCEEeCccCCCeecccCCCc
Confidence            9999999998863  356889999999999999999999998  99999999999999999999999999874311    


Q ss_pred             -----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          530 -----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       530 -----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                           ....+.+||......++.++|||||||++|||+||+.||...  +..+.........        +   ..+...
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~--~~~~~~~~~~~~~--------~---~~~~~~  219 (316)
T cd05620         153 ASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGD--DEDELFESIRVDT--------P---HYPRWI  219 (316)
T ss_pred             eeccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCC--CHHHHHHHHHhCC--------C---CCCCCC
Confidence                 123456788887778899999999999999999999999532  2223222222111        1   111123


Q ss_pred             HHHHHHHHHHhccCCCCCCCCHH-HHH
Q 006019          605 LETLGELIKSCVRADPEKRPTMR-DIA  630 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RPs~~-ev~  630 (664)
                      ..++.+++.+||+.||++||++. ++.
T Consensus       220 ~~~~~~li~~~l~~dP~~R~~~~~~~~  246 (316)
T cd05620         220 TKESKDILEKLFERDPTRRLGVVGNIR  246 (316)
T ss_pred             CHHHHHHHHHHccCCHHHcCCChHHHH
Confidence            35688999999999999999985 554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=100.00  E-value=1.9e-34  Score=297.56  Aligned_cols=241  Identities=20%  Similarity=0.269  Sum_probs=188.9

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||++... +++.+|+|.+.......  ......+.+|+.++++++|+|++++++.+...+  ..++|||
T Consensus         5 ~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~--~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~--~~~lv~e   80 (285)
T cd05630           5 YRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKK--RKGESMALNEKQILEKVNSRFVVSLAYAYETKD--ALCLVLT   80 (285)
T ss_pred             eEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccc--hHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCC--EEEEEEE
Confidence            367999999999999965 68899999886543222  223456788999999999999999999998776  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|+|.+++.......+++..+..++.+++.||+|||+.+  |+||||||+||++++++.++|+|||++.....    
T Consensus        81 ~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~--iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~  158 (285)
T cd05630          81 LMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQER--IVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTI  158 (285)
T ss_pred             ecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCC--EEeCCCCHHHEEECCCCCEEEeeccceeecCCCccc
Confidence            999999999886544556899999999999999999999988  99999999999999999999999999865432    


Q ss_pred             ----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCCh-HHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          530 ----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSL-EDWAADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       530 ----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                          ....+.+||......++.++|||||||++|||++|+.||....... .+........   ...       ..+...
T Consensus       159 ~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~  228 (285)
T cd05630         159 KGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKE---VQE-------EYSEKF  228 (285)
T ss_pred             cCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCccchHHHHHhhhhh---hhh-------hcCccC
Confidence                1234557888777778999999999999999999999995322111 1111111111   000       112223


Q ss_pred             HHHHHHHHHHhccCCCCCCCC-----HHHHHH
Q 006019          605 LETLGELIKSCVRADPEKRPT-----MRDIAA  631 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RPs-----~~ev~~  631 (664)
                      ...+.+++.+||+.||++||+     +.|+++
T Consensus       229 ~~~~~~li~~~l~~~p~~R~s~~~~~~~~~~~  260 (285)
T cd05630         229 SPDARSLCKMLLCKDPKERLGCQGGGAREVKE  260 (285)
T ss_pred             CHHHHHHHHHHhhcCHHHccCCCCCchHHHHc
Confidence            356889999999999999999     777776

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4e-34  Score=307.26  Aligned_cols=240  Identities=16%  Similarity=0.218  Sum_probs=184.5

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||+++.. ++..||+|++.......  ....+.+.+|++++++++|||||++++++.+.+  ..++|||
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~--~~~lv~E   81 (377)
T cd05629           6 VKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFK--KDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQ--YLYLIME   81 (377)
T ss_pred             eEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHH--hHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCC--eeEEEEe
Confidence            478999999999999864 68899999986432211  233467889999999999999999999998877  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|+|.+++..  ...+++.....++.+++.||+|||+++  |+||||||+|||++.++.+||+|||+++....    
T Consensus        82 ~~~gg~L~~~l~~--~~~~~~~~~~~~~~ql~~aL~~LH~~g--ivHrDlkp~NIll~~~~~~kl~DfGla~~~~~~~~~  157 (377)
T cd05629          82 FLPGGDLMTMLIK--YDTFSEDVTRFYMAECVLAIEAVHKLG--FIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDS  157 (377)
T ss_pred             CCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCC--eeccCCCHHHEEECCCCCEEEeeccccccccccccc
Confidence            9999999999863  356888888999999999999999999  99999999999999999999999999863210    


Q ss_pred             ----------------------------------------------------hhhhcccccccCCCCCCcCCcchhhHHH
Q 006019          530 ----------------------------------------------------AEMAATSKKLSSAPSASLESNVYNFGVL  557 (664)
Q Consensus       530 ----------------------------------------------------~~~~~~~pe~~~~~~~s~ksDVySfGvv  557 (664)
                                                                          +...+.+||......++.++|||||||+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvi  237 (377)
T cd05629         158 AYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLGAI  237 (377)
T ss_pred             ccccccccccccccccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCCceeeEecchh
Confidence                                                                1223556777777778999999999999


Q ss_pred             HHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCC---CCHHHHHHH
Q 006019          558 LFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKR---PTMRDIAAI  632 (664)
Q Consensus       558 l~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~R---Ps~~ev~~~  632 (664)
                      +|||+||+.||....  ..+............   .-+...    ....++.+++.+|+. +|.+|   +++.|+++.
T Consensus       238 l~elltG~~Pf~~~~--~~~~~~~i~~~~~~~---~~p~~~----~~s~~~~dli~~lL~-~~~~r~~r~~~~~~l~h  305 (377)
T cd05629         238 MFECLIGWPPFCSEN--SHETYRKIINWRETL---YFPDDI----HLSVEAEDLIRRLIT-NAENRLGRGGAHEIKSH  305 (377)
T ss_pred             hhhhhcCCCCCCCCC--HHHHHHHHHccCCcc---CCCCCC----CCCHHHHHHHHHHhc-CHhhcCCCCCHHHHhcC
Confidence            999999999995322  222222222211111   001111    123468899999997 66665   588888764

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=100.00  E-value=4.9e-34  Score=291.37  Aligned_cols=240  Identities=18%  Similarity=0.223  Sum_probs=184.3

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+. .++..+|+|++.....     .....+.+|+.++++++||||+++++++...+  ..++|+
T Consensus        13 ~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~-----~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~--~~~iv~   85 (267)
T cd06646          13 LIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPG-----DDFSLIQQEIFMVKECKHCNIVAYFGSYLSRE--KLWICM   85 (267)
T ss_pred             hhheeecCCCeEEEEEEECCCCeEEEEEEEecCcc-----chHHHHHHHHHHHHhcCCCCeeeeeEEEEeCC--EEEEEE
Confidence            457899999999999996 4688899998864322     12356889999999999999999999998776  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++|+|.++++.  ...+++..+..++.+++.|++|||+.+  |+||||||+||++++++.+||+|||+++.....  
T Consensus        86 e~~~~~~L~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~  161 (267)
T cd06646          86 EYCGGGSLQDIYHV--TGPLSELQIAYVCRETLQGLAYLHSKG--KMHRDIKGANILLTDNGDVKLADFGVAAKITATIA  161 (267)
T ss_pred             eCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCCHHHEEECCCCCEEECcCccceeeccccc
Confidence            99999999998863  346889999999999999999999988  999999999999999999999999998755321  


Q ss_pred             -------hhhcccccccC---CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 006019          531 -------EMAATSKKLSS---APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  600 (664)
Q Consensus       531 -------~~~~~~pe~~~---~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  600 (664)
                             ...+.+||...   ...++.++|||||||++|||+||+.||.....  .+..... .. .   ....+... .
T Consensus       162 ~~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~--~~~~~~~-~~-~---~~~~~~~~-~  233 (267)
T cd06646         162 KRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHP--MRALFLM-SK-S---NFQPPKLK-D  233 (267)
T ss_pred             ccCccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccch--hhhheee-ec-C---CCCCCCCc-c
Confidence                   12345677542   34467899999999999999999999842211  0000000 00 0   00111111 1


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          601 DEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       601 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      ....+..+.+++.+||+.+|++||+++++++.
T Consensus       234 ~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  265 (267)
T cd06646         234 KTKWSSTFHNFVKISLTKNPKKRPTAERLLTH  265 (267)
T ss_pred             ccccCHHHHHHHHHHhhCChhhCcCHHHHhcC
Confidence            12234578999999999999999999998864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=4.3e-34  Score=300.57  Aligned_cols=232  Identities=17%  Similarity=0.190  Sum_probs=182.6

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCC-cccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK-NFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~-niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.+.||+|+||.||+|+.. +++.+|+|++.......  ....+.+..|++++..++|+ +|+++++++...+  ..++|
T Consensus         4 ~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~--~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~--~~~lv   79 (324)
T cd05587           4 FLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQ--DDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMD--RLYFV   79 (324)
T ss_pred             EEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCC--EEEEE
Confidence            4578999999999999965 47789999987543211  22345688899999999765 5888888887766  67999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh--
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM--  529 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~--  529 (664)
                      |||+++|+|.+++..  ...+++..+..++.+++.||+|||+.+  |+||||||+|||+++++.+||+|||+++....  
T Consensus        80 ~E~~~~g~L~~~~~~--~~~~~~~~~~~~~~qi~~al~~lH~~~--ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~  155 (324)
T cd05587          80 MEYVNGGDLMYHIQQ--VGKFKEPHAVFYAAEIAIGLFFLHSKG--IIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGG  155 (324)
T ss_pred             EcCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEecCCCHHHeEEcCCCCEEEeecCcceecCCCC
Confidence            999999999998863  346889999999999999999999998  99999999999999999999999999864311  


Q ss_pred             -------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          530 -------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       530 -------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                             ....+.+||......++.++|||||||++|||+||+.||...  ...+..........           .++.
T Consensus       156 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~--~~~~~~~~i~~~~~-----------~~~~  222 (324)
T cd05587         156 KTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGE--DEDELFQSIMEHNV-----------SYPK  222 (324)
T ss_pred             CceeeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCC--CHHHHHHHHHcCCC-----------CCCC
Confidence                   233456788887778899999999999999999999999432  22333333222211           1122


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCH
Q 006019          603 EQLETLGELIKSCVRADPEKRPTM  626 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~  626 (664)
                      ....++.+++.+||+.||++|++.
T Consensus       223 ~~~~~~~~li~~~l~~~P~~R~~~  246 (324)
T cd05587         223 SLSKEAVSICKGLLTKHPAKRLGC  246 (324)
T ss_pred             CCCHHHHHHHHHHhhcCHHHcCCC
Confidence            233568899999999999999976

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=2.6e-34  Score=302.39  Aligned_cols=237  Identities=17%  Similarity=0.212  Sum_probs=184.4

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHH-HHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKID-TLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~-~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.||+|+||.||+|+.. +|..+|+|++.......  ......+..|.. +++.++||||+++++++...+  ..++|||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~--~~~lv~e   76 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLN--RKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTE--KLYFVLD   76 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCC--EEEEEEc
Confidence            36999999999999964 68899999986543221  123345666655 467799999999999998777  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|+|.+++.  ....+++.....++.+++.||+|||+.+  |+||||||+|||+++++.+||+|||+++....    
T Consensus        77 ~~~~~~L~~~l~--~~~~~~~~~~~~~~~qi~~al~~lH~~g--ivH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~  152 (325)
T cd05604          77 FVNGGELFFHLQ--RERSFPEPRARFYAAEIASALGYLHSIN--IVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSDT  152 (325)
T ss_pred             CCCCCCHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHCC--eeecCCCHHHeEECCCCCEEEeecCCcccCCCCCCC
Confidence            999999998885  3456899999999999999999999998  99999999999999999999999999875311    


Q ss_pred             -----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          530 -----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       530 -----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                           ....+.+||......++.++|||||||++|||+||+.||..  .+..+..........    ...       +..
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~--~~~~~~~~~~~~~~~----~~~-------~~~  219 (325)
T cd05604         153 TTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYC--RDVAEMYDNILHKPL----VLR-------PGA  219 (325)
T ss_pred             cccccCChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCC--CCHHHHHHHHHcCCc----cCC-------CCC
Confidence                 22345678888777889999999999999999999999943  333333333332211    111       122


Q ss_pred             HHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 006019          605 LETLGELIKSCVRADPEKRPTMRDIAAIL  633 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L  633 (664)
                      ...+.+++.+|++.+|++||++++.++.+
T Consensus       220 ~~~~~~ll~~ll~~~p~~R~~~~~~~~~i  248 (325)
T cd05604         220 SLTAWSILEELLEKDRQRRLGAKEDFLEI  248 (325)
T ss_pred             CHHHHHHHHHHhccCHHhcCCCCCCHHHH
Confidence            34678999999999999999886444333

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=6.1e-34  Score=304.63  Aligned_cols=241  Identities=19%  Similarity=0.223  Sum_probs=185.9

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+++.. ++..+|+|.+.......  ......+.+|+.+++.++||||+++++++.+.+  ..++||
T Consensus        47 ~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~--~~~lv~  122 (370)
T cd05596          47 VIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIK--RSDSAFFWEERDIMAHANSEWIVQLHYAFQDDK--YLYMVM  122 (370)
T ss_pred             EEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhh--hhhHHHHHHHHHHHHhCCCCCcceEEEEEecCC--EEEEEE
Confidence            4488999999999999965 58899999986432211  123355789999999999999999999998776  789999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++|+|.++++.   ..++......++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....   
T Consensus       123 Ey~~gg~L~~~l~~---~~l~~~~~~~~~~qi~~aL~~LH~~~--ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~~~~  197 (370)
T cd05596         123 EYMPGGDLVNLMSN---YDIPEKWARFYTAEVVLALDAIHSMG--FIHRDVKPDNMLLDKSGHLKLADFGTCMKMDANGM  197 (370)
T ss_pred             cCCCCCcHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCCHHHEEEcCCCCEEEEeccceeeccCCCc
Confidence            99999999998863   24778888889999999999999998  99999999999999999999999999876532   


Q ss_pred             -------hhhhcccccccCC----CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 006019          530 -------AEMAATSKKLSSA----PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       530 -------~~~~~~~pe~~~~----~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                             ....+.+||....    ..++.++|||||||++|||+||+.||...  ................   ..+.. 
T Consensus       198 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~--~~~~~~~~i~~~~~~~---~~~~~-  271 (370)
T cd05596         198 VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD--SLVGTYSKIMDHKNSL---TFPDD-  271 (370)
T ss_pred             ccCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCC--CHHHHHHHHHcCCCcC---CCCCc-
Confidence                   1233556776533    24788999999999999999999999533  2233333333221111   11111 


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCC--CCCHHHHHHH
Q 006019          599 SFDEEQLETLGELIKSCVRADPEK--RPTMRDIAAI  632 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~--RPs~~ev~~~  632 (664)
                         ...+.++.+++.+|++.+|++  ||++.|+++.
T Consensus       272 ---~~~s~~~~~li~~~L~~~p~r~~R~s~~ell~h  304 (370)
T cd05596         272 ---IEISKQAKDLICAFLTDREVRLGRNGVDEIKSH  304 (370)
T ss_pred             ---CCCCHHHHHHHHHHccChhhccCCCCHHHHhcC
Confidence               122356889999999999988  9999999653

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=8.7e-34  Score=294.38  Aligned_cols=235  Identities=20%  Similarity=0.303  Sum_probs=187.3

Q ss_pred             hcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||+|+. .++..+++|.+......     ....+.+|+.+++.++|+||+++++++....  ..++|||
T Consensus        25 ~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~-----~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~--~~~lv~e   97 (296)
T cd06654          25 FEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQP-----KKELIINEILVMRENKNPNIVNYLDSYLVGD--ELWVVME   97 (296)
T ss_pred             EEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcc-----hHHHHHHHHHHHHhCCCCCEeeEEEEEEeCC--EEEEeec
Confidence            46799999999999985 46889999988653322     2467889999999999999999999998766  7799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|+|.++++.   ..+++.++..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++....    
T Consensus        98 ~~~~~~L~~~~~~---~~~~~~~~~~i~~ql~~aL~~LH~~g--i~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~~  172 (296)
T cd06654          98 YLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLHSNQ--VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK  172 (296)
T ss_pred             ccCCCCHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEEcCCCCEEECccccchhccccccc
Confidence            9999999999853   35889999999999999999999998  99999999999999999999999999875432    


Q ss_pred             -----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          530 -----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       530 -----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                           ....+.+||.......+.++|||||||++|||+||+.||.....  .++.........  ...      ..+...
T Consensus       173 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~--~~~~~~~~~~~~--~~~------~~~~~~  242 (296)
T cd06654         173 RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENP--LRALYLIATNGT--PEL------QNPEKL  242 (296)
T ss_pred             cCcccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCH--HHhHHHHhcCCC--CCC------CCcccc
Confidence                 12245568877777788999999999999999999999953321  111111111100  000      112233


Q ss_pred             HHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          605 LETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ...+.+++.+||..+|++||++.++++
T Consensus       243 ~~~l~~li~~~l~~~p~~Rpt~~eil~  269 (296)
T cd06654         243 SAIFRDFLNRCLDMDVEKRGSAKELLQ  269 (296)
T ss_pred             CHHHHHHHHHHCcCCcccCcCHHHHhh
Confidence            456889999999999999999999987

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=100.00  E-value=1.2e-33  Score=289.35  Aligned_cols=239  Identities=20%  Similarity=0.333  Sum_probs=183.9

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCC----ce
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEP----FT  447 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~----~~  447 (664)
                      +.+.||+|+||.||+|... +++.+|+|.+.....      ....+.+|+.+++++ +|+||+++++++...+.    ..
T Consensus        10 ~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~------~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~   83 (272)
T cd06637          10 LVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD------EEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQ   83 (272)
T ss_pred             HHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCCc------cHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCcE
Confidence            3477999999999999965 578899998864321      235788999999998 79999999999875321    25


Q ss_pred             eEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhh
Q 006019          448 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~  527 (664)
                      .++||||+++|+|.+++.......+++..+..++.|++.|++|||+.+  |+||||||+||++++++.+||+|||+++..
T Consensus        84 ~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~--ivh~dl~~~nili~~~~~~~l~Dfg~~~~~  161 (272)
T cd06637          84 LWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHK--VIHRDIKGQNVLLTENAEVKLVDFGVSAQL  161 (272)
T ss_pred             EEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC--CccCCCCHHHEEECCCCCEEEccCCCceec
Confidence            789999999999999987545567899999999999999999999998  999999999999999999999999998754


Q ss_pred             hhh---------hhhcccccccC-----CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCcccc
Q 006019          528 AMA---------EMAATSKKLSS-----APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFV  593 (664)
Q Consensus       528 ~~~---------~~~~~~pe~~~-----~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (664)
                      ...         ...+.+||+..     ...++.++|||||||++|||++|+.||.... ...... ....  .......
T Consensus       162 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~-~~~~~~-~~~~--~~~~~~~  237 (272)
T cd06637         162 DRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMH-PMRALF-LIPR--NPAPRLK  237 (272)
T ss_pred             ccccccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccC-HHHHHH-HHhc--CCCCCCC
Confidence            211         22345677653     2357789999999999999999999984321 111111 1111  1111111


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          594 DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       594 d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                             ....+..+.+++.+||+.+|.+||++.++++
T Consensus       238 -------~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  268 (272)
T cd06637         238 -------SKKWSKKFQSFIESCLVKNHSQRPTTEQLMK  268 (272)
T ss_pred             -------CCCcCHHHHHHHHHHcCCChhhCCCHHHHhh
Confidence                   1123356889999999999999999999875

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=8.4e-34  Score=298.24  Aligned_cols=232  Identities=16%  Similarity=0.177  Sum_probs=183.5

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.+.||+|+||.||+|+.. ++..+|+|.+.......  ....+.+..|..++..+ +|++|+++++++...+  ..++|
T Consensus         4 ~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~--~~~lv   79 (323)
T cd05616           4 FLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQ--DDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMD--RLYFV   79 (323)
T ss_pred             EEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCC--EEEEE
Confidence            4478999999999999965 57899999987543221  22334577788888877 5899999999998776  67999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh--
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM--  529 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~--  529 (664)
                      |||+++|+|.+++..  ...+++..+..++.+++.||+|||+.+  |+||||||+|||+++++.+||+|||+++....  
T Consensus        80 ~E~~~~g~L~~~~~~--~~~~~~~~~~~~~~qi~~aL~~LH~~~--ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~~~  155 (323)
T cd05616          80 MEYVNGGDLMYQIQQ--VGRFKEPHAVFYAAEIAIGLFFLHSKG--IIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDG  155 (323)
T ss_pred             EcCCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--EEecCCCHHHeEECCCCcEEEccCCCceecCCCC
Confidence            999999999988853  346889999999999999999999998  99999999999999999999999999875321  


Q ss_pred             -------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          530 -------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       530 -------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                             ....+.+||......++.++|||||||++|||+||+.||..  .+..+..........           .++.
T Consensus       156 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~--~~~~~~~~~i~~~~~-----------~~p~  222 (323)
T cd05616         156 VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEG--EDEDELFQSIMEHNV-----------AYPK  222 (323)
T ss_pred             CccccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCC--CCHHHHHHHHHhCCC-----------CCCC
Confidence                   23346678888888899999999999999999999999943  223333333332211           1122


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCH
Q 006019          603 EQLETLGELIKSCVRADPEKRPTM  626 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~  626 (664)
                      ....++.+++.+|++.+|++|++.
T Consensus       223 ~~s~~~~~li~~~l~~~p~~R~~~  246 (323)
T cd05616         223 SMSKEAVAICKGLMTKHPGKRLGC  246 (323)
T ss_pred             cCCHHHHHHHHHHcccCHHhcCCC
Confidence            234568899999999999999984

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=7.7e-35  Score=306.02  Aligned_cols=241  Identities=20%  Similarity=0.329  Sum_probs=194.8

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      |..+||+|+|-+||||... +|.+||--.++...... .....+.|..|+.+|+.++|+|||+++.++.+.......+|+
T Consensus        44 ~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q-~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iT  122 (632)
T KOG0584|consen   44 FDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQ-SPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFIT  122 (632)
T ss_pred             hhhhcccccceeeeeccccccchhhHHHHHhHHHhhc-ChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeee
Confidence            4578999999999999854 57888754443322221 133457899999999999999999999999877644578999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCC-CceEecccCchhhhhhhh
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED-YAAKLSDLSFWNEIAMAE  531 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~-~~~kl~DfGla~~~~~~~  531 (664)
                      |.|..|+|+.|+.  +.+.++......+++||++||.|||++.|||+|||||..||+|+.+ |.+||+|.|+|.......
T Consensus       123 EL~TSGtLr~Y~k--k~~~vn~kaik~W~RQILkGL~yLHs~~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s~  200 (632)
T KOG0584|consen  123 ELFTSGTLREYRK--KHRRVNIKAIKSWCRQILKGLVYLHSQDPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKSH  200 (632)
T ss_pred             ecccCCcHHHHHH--HhccCCHHHHHHHHHHHHHHhhhhhcCCCCccccccccceEEEcCCcCceeecchhHHHHhhccc
Confidence            9999999999985  5567888899999999999999999999999999999999999965 799999999998875432


Q ss_pred             -------hhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCC--CccccCCCCCCCCH
Q 006019          532 -------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP--LQQFVDPTLSSFDE  602 (664)
Q Consensus       532 -------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~  602 (664)
                             ...++||.+. ..|.+..||||||++++||+|+..||. +..+..+..+++..+..+  +..+-|        
T Consensus       201 aksvIGTPEFMAPEmYE-E~YnE~VDVYaFGMCmLEMvT~eYPYs-EC~n~AQIYKKV~SGiKP~sl~kV~d--------  270 (632)
T KOG0584|consen  201 AKSVIGTPEFMAPEMYE-ENYNELVDVYAFGMCMLEMVTSEYPYS-ECTNPAQIYKKVTSGIKPAALSKVKD--------  270 (632)
T ss_pred             cceeccCccccChHHHh-hhcchhhhhhhhhHHHHHHHhccCChh-hhCCHHHHHHHHHcCCCHHHhhccCC--------
Confidence                   2234555554 568999999999999999999999994 556677777777776432  222322        


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          603 EQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                         .++.++|.+|+.. ..+||++.|+++
T Consensus       271 ---Pevr~fIekCl~~-~~~R~sa~eLL~  295 (632)
T KOG0584|consen  271 ---PEVREFIEKCLAT-KSERLSAKELLK  295 (632)
T ss_pred             ---HHHHHHHHHHhcC-chhccCHHHHhh
Confidence               3588999999999 999999999886

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=3.6e-34  Score=292.30  Aligned_cols=240  Identities=18%  Similarity=0.290  Sum_probs=188.1

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCC----chhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDW----PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~----~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      +...||+|+||.||+|... ++..+|+|.+........    .....+.+.+|++++++++||||+++++++.+.+  ..
T Consensus         4 ~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~   81 (267)
T cd06628           4 KGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDAD--HL   81 (267)
T ss_pred             ccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCC--cc
Confidence            4568999999999999864 578999998865433221    1223467889999999999999999999998876  67


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++|+||+++++|.+++..  ...+++.....++.+++.|++|||+.+  ++||||+|+||++++++.+||+|||+++...
T Consensus        82 ~lv~e~~~~~~L~~~l~~--~~~l~~~~~~~~~~~l~~~l~~lH~~~--ivH~di~p~nil~~~~~~~~l~dfg~~~~~~  157 (267)
T cd06628          82 NIFLEYVPGGSVAALLNN--YGAFEETLVRNFVRQILKGLNYLHNRG--IIHRDIKGANILVDNKGGIKISDFGISKKLE  157 (267)
T ss_pred             EEEEEecCCCCHHHHHHh--ccCccHHHHHHHHHHHHHHHHHHHhcC--cccccCCHHHEEEcCCCCEEecccCCCcccc
Confidence            999999999999999863  356889999999999999999999998  9999999999999999999999999987664


Q ss_pred             h---------------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCcccc
Q 006019          529 M---------------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFV  593 (664)
Q Consensus       529 ~---------------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (664)
                      .               ....+.+||......++.++|||||||++|||+||+.||....  ..+-.......       .
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~--~~~~~~~~~~~-------~  228 (267)
T cd06628         158 ANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCT--QLQAIFKIGEN-------A  228 (267)
T ss_pred             cccccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCcc--HHHHHHHHhcc-------C
Confidence            1               1123456777666778889999999999999999999994321  11111111110       1


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          594 DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       594 d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .   ...+...+..+.+++.+||+.||++||++.++++
T Consensus       229 ~---~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  263 (267)
T cd06628         229 S---PEIPSNISSEAIDFLEKTFEIDHNKRPTAAELLK  263 (267)
T ss_pred             C---CcCCcccCHHHHHHHHHHccCCchhCcCHHHHhh
Confidence            1   1122334467889999999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=6.4e-34  Score=298.90  Aligned_cols=231  Identities=18%  Similarity=0.216  Sum_probs=179.9

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHH-HHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKID-TLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~-~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.||+|+||.||+|+.. ++..+|+|++.......  ......+..|.. +++.++||||+++++++.+.+  ..++|||
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~--~~~lv~e   76 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILK--KKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAE--KLYFVLD   76 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHH--hhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCC--EEEEEEc
Confidence            36999999999999975 58899999986543211  122344555554 678899999999999998776  7799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|+|.+++..  ...+.......++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||+++....    
T Consensus        77 ~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~L~~lH~~~--ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~  152 (321)
T cd05603          77 YVNGGELFFHLQR--ERCFLEPRARFYAAEVASAIGYLHSLN--IIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEET  152 (321)
T ss_pred             CCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEeccCCHHHeEECCCCCEEEccCCCCccCCCCCCc
Confidence            9999999888753  346788888899999999999999998  99999999999999999999999999875311    


Q ss_pred             -----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          530 -----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       530 -----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                           ....+.+||......++.++|||||||++|||+||+.||...  +..+..........           ..+...
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~--~~~~~~~~i~~~~~-----------~~~~~~  219 (321)
T cd05603         153 TSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSR--DVSQMYDNILHKPL-----------QLPGGK  219 (321)
T ss_pred             cccccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCC--CHHHHHHHHhcCCC-----------CCCCCC
Confidence                 123456788877777899999999999999999999999432  33333333332210           112223


Q ss_pred             HHHHHHHHHHhccCCCCCCCCHH
Q 006019          605 LETLGELIKSCVRADPEKRPTMR  627 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RPs~~  627 (664)
                      ...+.+++.+|++.||++||+..
T Consensus       220 ~~~~~~li~~~l~~~p~~R~~~~  242 (321)
T cd05603         220 TVAACDLLVGLLHKDQRRRLGAK  242 (321)
T ss_pred             CHHHHHHHHHHccCCHhhcCCCC
Confidence            35688999999999999999764

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-34  Score=275.54  Aligned_cols=228  Identities=21%  Similarity=0.288  Sum_probs=188.7

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      ...||.|+||.|...+.+ +|..+|+|++.....-.  ..+.+...+|..+|+.+.||.++++.+-+.+..  ..+||||
T Consensus        49 ~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVk--lKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~--~lymvme  124 (355)
T KOG0616|consen   49 LKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVK--LKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNS--NLYMVME  124 (355)
T ss_pred             eeeeccCccceEEEEEEccCCceeehhhcCHHHHHH--HHHHHHHhhHHHHHhhccCceeEEEEEeeccCC--eEEEEEe
Confidence            367999999999999965 58899999997544322  234466789999999999999999999998887  7899999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      |+++|.|+.+++  ..+.++.....-+|.+|+.||+|||+++  |++|||||+|||||.+|.+||+|||+|+.....   
T Consensus       125 yv~GGElFS~Lr--k~~rF~e~~arFYAAeivlAleylH~~~--iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~rT~T  200 (355)
T KOG0616|consen  125 YVPGGELFSYLR--KSGRFSEPHARFYAAEIVLALEYLHSLD--IIYRDLKPENLLLDQNGHIKITDFGFAKRVSGRTWT  200 (355)
T ss_pred             ccCCccHHHHHH--hcCCCCchhHHHHHHHHHHHHHHHHhcC--eeeccCChHHeeeccCCcEEEEeccceEEecCcEEE
Confidence            999999999997  5667999999999999999999999999  999999999999999999999999999987543   


Q ss_pred             ---hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHH
Q 006019          531 ---EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLET  607 (664)
Q Consensus       531 ---~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  607 (664)
                         +..+.+||......+..++|.|||||++|||+.|..||.....  .+....++.+.-.           +|......
T Consensus       201 lCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~--~~iY~KI~~~~v~-----------fP~~fs~~  267 (355)
T KOG0616|consen  201 LCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNP--IQIYEKILEGKVK-----------FPSYFSSD  267 (355)
T ss_pred             ecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCCh--HHHHHHHHhCccc-----------CCcccCHH
Confidence               2345578888888899999999999999999999999954332  3333444444222           23333356


Q ss_pred             HHHHHHHhccCCCCCC
Q 006019          608 LGELIKSCVRADPEKR  623 (664)
Q Consensus       608 l~~l~~~Cl~~~P~~R  623 (664)
                      +.+|+...++.|-.+|
T Consensus       268 ~kdLl~~LL~vD~t~R  283 (355)
T KOG0616|consen  268 AKDLLKKLLQVDLTKR  283 (355)
T ss_pred             HHHHHHHHHhhhhHhh
Confidence            7889999999988888

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=3.3e-34  Score=291.33  Aligned_cols=235  Identities=20%  Similarity=0.351  Sum_probs=179.3

Q ss_pred             cccccCCCeEEEEEEECC--------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCce
Q 006019          376 NVIGSSPIGTVYKGTLSN--------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  447 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~--------~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  447 (664)
                      +.||+|+||.||+|....        ...+++|.+....     ....++|.+|+.+++.++||||+++++++...+  .
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~-----~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~--~   73 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSH-----RNYSESFFEAASMMSQLSHKHLVLNYGVCVCGD--E   73 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchh-----HHHHHHHHHHHHHHHhCCCCChhheeeEEEeCC--C
Confidence            369999999999998642        2236666664321     234567899999999999999999999998766  5


Q ss_pred             eEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCc--------eEec
Q 006019          448 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA--------AKLS  519 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~--------~kl~  519 (664)
                      .++||||+++|+|.++++.. ...+++..+++++.|++.||+|||+++  |+||||||+||+++.++.        +|++
T Consensus        74 ~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~--iiH~dlkp~nili~~~~~~~~~~~~~~~l~  150 (258)
T cd05078          74 SIMVQEYVKFGSLDTYLKKN-KNLINISWKLEVAKQLAWALHFLEDKG--LTHGNVCAKNVLLIREEDRKTGNPPFIKLS  150 (258)
T ss_pred             cEEEEecCCCCcHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCccceEEEecccccccCCCceEEec
Confidence            68999999999999998743 346899999999999999999999998  999999999999987765        5999


Q ss_pred             ccCchhhhhhh-----hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCC-CCccCCCCChHHHHHHHhcCCCCCccc
Q 006019          520 DLSFWNEIAMA-----EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGR-LPYLVDNGSLEDWAADYLSGVQPLQQF  592 (664)
Q Consensus       520 DfGla~~~~~~-----~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~-~P~~~~~~~~~~~~~~~~~~~~~~~~~  592 (664)
                      |||++......     ...+.+||.... ..++.++|||||||++|||++|. .|+...  ....... ......     
T Consensus       151 d~g~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~--~~~~~~~-~~~~~~-----  222 (258)
T cd05078         151 DPGISITVLPKEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSAL--DSQKKLQ-FYEDRH-----  222 (258)
T ss_pred             ccccccccCCchhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhc--cHHHHHH-HHHccc-----
Confidence            99987655322     234567877654 45788999999999999999985 555221  1111111 111100     


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 006019          593 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR  634 (664)
Q Consensus       593 ~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~  634 (664)
                            ..+.....++.+++.+||+.+|++||+++++++.|+
T Consensus       223 ------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~  258 (258)
T cd05078         223 ------QLPAPKWTELANLINQCMDYEPDFRPSFRAIIRDLN  258 (258)
T ss_pred             ------cCCCCCcHHHHHHHHHHhccChhhCCCHHHHHHhcC
Confidence                  111122246889999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=100.00  E-value=1.4e-33  Score=286.05  Aligned_cols=240  Identities=22%  Similarity=0.332  Sum_probs=191.8

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||++... +++.+++|++......   ....+.+.+|++++++++|+|++++++.+...+. ..++||
T Consensus         4 ~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~-~~~lv~   79 (257)
T cd08223           4 FVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNAS---RRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDG-LLYIVM   79 (257)
T ss_pred             EEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcC---HHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCC-EEEEEe
Confidence            4578999999999999964 5788999998643321   2345678999999999999999999988764332 468999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++++|.+++.......+++.++..++.+++.|++|||+.+  ++||||||+||+++.++.++|+|||+++....   
T Consensus        80 e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~~--i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~~~  157 (257)
T cd08223          80 GFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEKH--ILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCD  157 (257)
T ss_pred             cccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeccCCCchhEEEecCCcEEEecccceEEecccCC
Confidence            9999999999997655567899999999999999999999998  99999999999999999999999999875532   


Q ss_pred             ------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          530 ------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       530 ------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                            ....+.+||......++.++||||||++++||+||+.||..  .+...+......+.  .        ...+..
T Consensus       158 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~--~~~~~~~~~~~~~~--~--------~~~~~~  225 (257)
T cd08223         158 MASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNA--KDMNSLVYRIIEGK--L--------PPMPKD  225 (257)
T ss_pred             ccccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCC--CCHHHHHHHHHhcC--C--------CCCccc
Confidence                  12234578887777888999999999999999999999843  23333333333221  1        112233


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ....+.+++.+||+.+|++||++.++++
T Consensus       226 ~~~~~~~li~~~l~~~p~~Rp~~~~~l~  253 (257)
T cd08223         226 YSPELGELIATMLSKRPEKRPSVKSILR  253 (257)
T ss_pred             cCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence            4457899999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=100.00  E-value=1.1e-33  Score=294.72  Aligned_cols=242  Identities=20%  Similarity=0.334  Sum_probs=187.5

Q ss_pred             cccccCCCeEEEEEEEC-CCc----EEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEE
Q 006019          376 NVIGSSPIGTVYKGTLS-NGV----EIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  450 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~----~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~l  450 (664)
                      +.||+|+||.||+|... ++.    .+|+|.+....    ......+|.+|+.++++++||||++++|+|....   .++
T Consensus        13 ~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~---~~~   85 (303)
T cd05110          13 KVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETT----GPKANVEFMDEALIMASMDHPHLVRLLGVCLSPT---IQL   85 (303)
T ss_pred             cccccCCCccEEEEEEecCCCcceeeEEEEeccccC----CHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCCC---cee
Confidence            67999999999999863 444    45777664322    1233457899999999999999999999997543   479


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  530 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~  530 (664)
                      ++||+++|+|.+++... ...+++..+..++.+++.||+|||+.+  |+||||||+||++++++.+||+|||+++.....
T Consensus        86 v~e~~~~g~l~~~~~~~-~~~~~~~~~~~~~~qi~~~L~~LH~~~--ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~~~  162 (303)
T cd05110          86 VTQLMPHGCLLDYVHEH-KDNIGSQLLLNWCVQIAKGMMYLEERR--LVHRDLAARNVLVKSPNHVKITDFGLARLLEGD  162 (303)
T ss_pred             eehhcCCCCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHhhcC--eeccccccceeeecCCCceEEccccccccccCc
Confidence            99999999999998632 346889999999999999999999998  999999999999999999999999998765321


Q ss_pred             -----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 006019          531 -----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       531 -----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                                 ...+.+||......++.++|||||||++|||+| |+.||....  ..+. ...+.......        
T Consensus       163 ~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~--~~~~-~~~~~~~~~~~--------  231 (303)
T cd05110         163 EKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIP--TREI-PDLLEKGERLP--------  231 (303)
T ss_pred             ccccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCC--HHHH-HHHHHCCCCCC--------
Confidence                       123456777667778899999999999999998 999984321  2222 22222211110        


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                       .+..+...+.+++.+||..+|++||+++++++.|+++...
T Consensus       232 -~~~~~~~~~~~li~~c~~~~p~~Rp~~~~l~~~l~~~~~~  271 (303)
T cd05110         232 -QPPICTIDVYMVMVKCWMIDADSRPKFKELAAEFSRMARD  271 (303)
T ss_pred             -CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence             1112234688999999999999999999999999998644

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=100.00  E-value=4.8e-34  Score=292.41  Aligned_cols=246  Identities=20%  Similarity=0.326  Sum_probs=188.5

Q ss_pred             hhcccccCCCeEEEEEEEC----CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC----
Q 006019          374 FSNVIGSSPIGTVYKGTLS----NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----  445 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~----~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~----  445 (664)
                      +.+.||+|+||.||+|.+.    ++..+|+|.+......   ....+++.+|++++++++||||+++++++.....    
T Consensus         3 ~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~   79 (273)
T cd05074           3 LGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFS---SSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRL   79 (273)
T ss_pred             chhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCC---hHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCcc
Confidence            3468999999999999863    3678999988643322   2345678999999999999999999999865331    


Q ss_pred             ceeEEEEEecCCCChhhhhccc----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEeccc
Q 006019          446 FTRMMVFEYAPNGTLFEHIHIK----ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDL  521 (664)
Q Consensus       446 ~~~~lV~Ey~~~GsL~~~l~~~----~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~Df  521 (664)
                      ...++++||+++|+|.+++...    ....+++....+++.+++.|++|||+.+  |+||||||+||++++++.+|++||
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~--i~H~dikp~nili~~~~~~kl~df  157 (273)
T cd05074          80 PIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSKN--FIHRDLAARNCMLNENMTVCVADF  157 (273)
T ss_pred             cceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhCC--EeecccchhhEEEcCCCCEEECcc
Confidence            1247899999999998887422    2235889999999999999999999988  999999999999999999999999


Q ss_pred             Cchhhhhhhh-----------hhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCC
Q 006019          522 SFWNEIAMAE-----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPL  589 (664)
Q Consensus       522 Gla~~~~~~~-----------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~  589 (664)
                      |+++......           ..+.+||.......+.++||||||+++|||++ |+.||...  ...+........ ...
T Consensus       158 g~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~--~~~~~~~~~~~~-~~~  234 (273)
T cd05074         158 GLSKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGV--ENSEIYNYLIKG-NRL  234 (273)
T ss_pred             cccccccCCcceecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCC--CHHHHHHHHHcC-CcC
Confidence            9988653211           12334565555667889999999999999999 88888422  222222222221 111


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 006019          590 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  636 (664)
Q Consensus       590 ~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i  636 (664)
                               ..+...+..+.+++.+||+.+|++||++.++++.|+++
T Consensus       235 ---------~~~~~~~~~~~~l~~~~l~~~p~~Rps~~~~~~~l~~~  272 (273)
T cd05074         235 ---------KQPPDCLEDVYELMCQCWSPEPKCRPSFQHLRDQLELI  272 (273)
T ss_pred             ---------CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence                     01122335789999999999999999999999999976

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-35  Score=297.44  Aligned_cols=234  Identities=18%  Similarity=0.297  Sum_probs=190.6

Q ss_pred             cccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      +.||+|.||.||||.. ..++.||+|++.+...++    ...+..+|+.++..++|+||.+++|.+..+.  ..+++|||
T Consensus        19 ~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~d----eIediqqei~~Ls~~~~~~it~yygsyl~g~--~LwiiMey   92 (467)
T KOG0201|consen   19 ELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAED----EIEDIQQEISVLSQCDSPNITEYYGSYLKGT--KLWIIMEY   92 (467)
T ss_pred             hhccccccceeeeeeeccccceEEEEEechhhcch----hhHHHHHHHHHHHhcCcchHHhhhhheeecc--cHHHHHHH
Confidence            5799999999999995 468899999998876544    4567899999999999999999999998877  67999999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh-----
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM-----  529 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~-----  529 (664)
                      |.+|++.+.+..  +..++.....-|.+++..|+.|||..+  .+|||||+.|||+..+|.+|++|||.+..+..     
T Consensus        93 ~~gGsv~~lL~~--~~~~~E~~i~~ilre~l~~l~ylH~~~--kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~rr  168 (467)
T KOG0201|consen   93 CGGGSVLDLLKS--GNILDEFEIAVILREVLKGLDYLHSEK--KIHRDIKAANILLSESGDVKLADFGVAGQLTNTVKRR  168 (467)
T ss_pred             hcCcchhhhhcc--CCCCccceeeeehHHHHHHhhhhhhcc--eecccccccceeEeccCcEEEEecceeeeeechhhcc
Confidence            999999999863  344466667778899999999999998  99999999999999999999999999866532     


Q ss_pred             ----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 006019          530 ----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  605 (664)
Q Consensus       530 ----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  605 (664)
                          ++..+++||......|+.|+||||+|++.+||.+|..|+....  .       +.-...+.+-..|.+   .....
T Consensus       169 ~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~h--P-------mrvlflIpk~~PP~L---~~~~S  236 (467)
T KOG0201|consen  169 KTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLH--P-------MRVLFLIPKSAPPRL---DGDFS  236 (467)
T ss_pred             ccccccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccC--c-------ceEEEeccCCCCCcc---ccccC
Confidence                3456778999888889999999999999999999999983211  1       000001111112222   23455


Q ss_pred             HHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          606 ETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       606 ~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ..+.+++..|+.++|+.||++.++++
T Consensus       237 ~~~kEFV~~CL~k~P~~RpsA~~LLK  262 (467)
T KOG0201|consen  237 PPFKEFVEACLDKNPEFRPSAKELLK  262 (467)
T ss_pred             HHHHHHHHHHhhcCcccCcCHHHHhh
Confidence            67899999999999999999999875

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=7.1e-34  Score=293.15  Aligned_cols=243  Identities=19%  Similarity=0.292  Sum_probs=191.2

Q ss_pred             hhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      .+.+.||+|+||.||++... ++..+|+|.+.....    ....+.|.+|+++++.++||||+++++++...+  ..++|
T Consensus         8 ~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~----~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~lv   81 (284)
T cd06620           8 ETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAK----SSVRKQILRELQIMHECRSPYIVSFYGAFLNEN--NICMC   81 (284)
T ss_pred             HHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCc----chHHHHHHHHHHHHHHcCCCCcceEeeeEecCC--EEEEE
Confidence            34578999999999999964 588899998764322    234578999999999999999999999998876  77999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh-
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM-  529 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~-~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~-  529 (664)
                      |||+++|+|.++++.  ...+++.....++.+++.|+.|||+ .+  ++||||||+||++++++.++|+|||++..... 
T Consensus        82 ~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~~i~~~l~~LH~~~~--i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~  157 (284)
T cd06620          82 MEFMDCGSLDRIYKK--GGPIPVEILGKIAVAVVEGLTYLYNVHR--IMHRDIKPSNILVNSRGQIKLCDFGVSGELINS  157 (284)
T ss_pred             EecCCCCCHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHHhcC--eeccCCCHHHEEECCCCcEEEccCCcccchhhh
Confidence            999999999998863  3468999999999999999999996 56  99999999999999999999999999865422 


Q ss_pred             ------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCC---------hHHHHHHHhcCCCCCccccC
Q 006019          530 ------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGS---------LEDWAADYLSGVQPLQQFVD  594 (664)
Q Consensus       530 ------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~---------~~~~~~~~~~~~~~~~~~~d  594 (664)
                            ....+.+||.......+.++|||||||++||++||+.||......         ..++........       .
T Consensus       158 ~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~  230 (284)
T cd06620         158 IADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQEP-------P  230 (284)
T ss_pred             ccCccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHHhhcc-------C
Confidence                  123445678776677889999999999999999999999532221         112222222111       0


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 006019          595 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR  634 (664)
Q Consensus       595 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~  634 (664)
                      +.+.  ....+.++.+++.+||+.||++||++.|+++..-
T Consensus       231 ~~~~--~~~~~~~~~~li~~~l~~dp~~Rpt~~e~~~~~~  268 (284)
T cd06620         231 PRLP--SSDFPEDLRDFVDACLLKDPTERPTPQQLCAMPP  268 (284)
T ss_pred             CCCC--chhcCHHHHHHHHHHhcCCcccCcCHHHHhcCcc
Confidence            1111  1124456889999999999999999999998643

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=100.00  E-value=1.4e-33  Score=294.61  Aligned_cols=247  Identities=15%  Similarity=0.242  Sum_probs=187.2

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||++... ++..+++|.+.....    .....++.+|++++++++||||+++++++...+  ..++|+
T Consensus         5 ~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~----~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~   78 (308)
T cd06615           5 KLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIK----PAIRNQIIRELKVLHECNSPYIVGFYGAFYSDG--EISICM   78 (308)
T ss_pred             EEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccC----HHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCC--EEEEEe
Confidence            3478999999999999965 577888888754321    234567899999999999999999999998877  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM--  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~-~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~--  529 (664)
                      ||+++|+|.++++.  ...+++.....++.+++.||+|||+ ++  ++||||||+|||++.++.+||+|||+++....  
T Consensus        79 ey~~~~~L~~~l~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~~--i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~  154 (308)
T cd06615          79 EHMDGGSLDQVLKK--AGRIPENILGKISIAVLRGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM  154 (308)
T ss_pred             eccCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhhCC--EEECCCChHHEEEecCCcEEEccCCCcccccccc
Confidence            99999999999863  3568899999999999999999997 56  99999999999999999999999999875532  


Q ss_pred             -----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCcc-------------
Q 006019          530 -----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQ-------------  591 (664)
Q Consensus       530 -----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~-------------  591 (664)
                           ....+.+||...+..++.++|||||||++|||+||+.||....  ...+....-........             
T Consensus       155 ~~~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (308)
T cd06615         155 ANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPD--AKELEAMFGRPVSEGEAKESHRPVSGHPPD  232 (308)
T ss_pred             cccCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCcc--hhhHHHhhcCccccccccCCcccccCCCCC
Confidence                 1234456787777778899999999999999999999985322  11111111100000000             


Q ss_pred             -------------ccCCCCCCCC-HHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          592 -------------FVDPTLSSFD-EEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       592 -------------~~d~~~~~~~-~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                                   .........+ .....++.+++.+||+.+|++||++++|++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~  287 (308)
T cd06615         233 SPRPMAIFELLDYIVNEPPPKLPSGAFSDEFQDFVDKCLKKNPKERADLKELTKH  287 (308)
T ss_pred             ccchhhHHHHHHHHhcCCCccCcCcccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence                         0000000000 1133468899999999999999999998876

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=9.7e-34  Score=304.86  Aligned_cols=239  Identities=15%  Similarity=0.240  Sum_probs=181.3

Q ss_pred             hcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||+|+. .++..+|+|++.......  ....+.+.+|++++++++|+|||++++++.+.+  ..++|||
T Consensus         6 ~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~--~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~--~~~lv~E   81 (382)
T cd05625           6 IKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLL--RNQVAHVKAERDILAEADNEWVVRLYYSFQDKD--NLYFVMD   81 (382)
T ss_pred             EEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhh--HHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCC--EEEEEEe
Confidence            47899999999999996 467899999986433211  234567899999999999999999999998877  7799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh-----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA-----  528 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~-----  528 (664)
                      ||++|+|.+++..  ...++......++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...     
T Consensus        82 ~~~gg~L~~~l~~--~~~~~e~~~~~~~~qi~~al~~lH~~~--ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~~~~~  157 (382)
T cd05625          82 YIPGGDMMSLLIR--MGIFPEDLARFYIAELTCAVESVHKMG--FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDS  157 (382)
T ss_pred             CCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEECCCCCEEEeECCCCccccccccc
Confidence            9999999999863  346788888899999999999999998  9999999999999999999999999974221     


Q ss_pred             ---------------------------------------------------hhhhhcccccccCCCCCCcCCcchhhHHH
Q 006019          529 ---------------------------------------------------MAEMAATSKKLSSAPSASLESNVYNFGVL  557 (664)
Q Consensus       529 ---------------------------------------------------~~~~~~~~pe~~~~~~~s~ksDVySfGvv  557 (664)
                                                                         .+...+.+||......++.++|||||||+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvi  237 (382)
T cd05625         158 KYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVI  237 (382)
T ss_pred             cccccccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEechHH
Confidence                                                               01223567887777778999999999999


Q ss_pred             HHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCC---HHHHHH
Q 006019          558 LFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT---MRDIAA  631 (664)
Q Consensus       558 l~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs---~~ev~~  631 (664)
                      +|||+||+.||...  ...+............   ..+....    ...++.+++.+++ .+|++|++   +.++++
T Consensus       238 l~elltG~~Pf~~~--~~~~~~~~i~~~~~~~---~~p~~~~----~s~~~~~li~~l~-~~p~~R~~~~~~~ei~~  304 (382)
T cd05625         238 LYEMLVGQPPFLAQ--TPLETQMKVINWQTSL---HIPPQAK----LSPEASDLIIKLC-RGPEDRLGKNGADEIKA  304 (382)
T ss_pred             HHHHHhCCCCCCCC--CHHHHHHHHHccCCCc---CCCCccc----CCHHHHHHHHHHc-cCHhHcCCCCCHHHHhc
Confidence            99999999999532  2222222222211111   1111111    2234667776655 59999987   776654

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=5.7e-34  Score=299.80  Aligned_cols=236  Identities=19%  Similarity=0.205  Sum_probs=181.5

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHH-HHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKID-TLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~-~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.||+|+||.||+|+.. ++..+|+|++.......  ......+..|.. +++.++|+||+++++++...+  ..++|||
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~--~~~lv~e   76 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILK--KKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTAD--KLYFVLD   76 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHh--hhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCC--eEEEEEe
Confidence            36999999999999965 57789999986533211  112234444444 568899999999999998777  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|+|.+++..  ...+.......++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....    
T Consensus        77 ~~~~~~L~~~~~~--~~~~~~~~~~~~~~qi~~~L~~lH~~g--iiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~~~  152 (325)
T cd05602          77 YINGGELFYHLQR--ERCFLEPRARFYAAEIASALGYLHSLN--IVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNGT  152 (325)
T ss_pred             CCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEecCCCHHHeEECCCCCEEEccCCCCcccccCCCC
Confidence            9999999998863  345778888889999999999999998  99999999999999999999999999875321    


Q ss_pred             -----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          530 -----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       530 -----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                           ....+.+||......++.++|||||||++|||++|+.||..  ....+...........           .++..
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~--~~~~~~~~~i~~~~~~-----------~~~~~  219 (325)
T cd05602         153 TSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYS--RNTAEMYDNILNKPLQ-----------LKPNI  219 (325)
T ss_pred             cccccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCC--CCHHHHHHHHHhCCcC-----------CCCCC
Confidence                 22345678887777889999999999999999999999943  2333333333222110           11122


Q ss_pred             HHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          605 LETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      ...+.+++.+|++.+|.+||++.+.+..
T Consensus       220 ~~~~~~li~~~l~~~p~~R~~~~~~~~~  247 (325)
T cd05602         220 TNSARHLLEGLLQKDRTKRLGAKDDFME  247 (325)
T ss_pred             CHHHHHHHHHHcccCHHHCCCCCCCHHH
Confidence            3568899999999999999998754433

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=7.1e-34  Score=300.04  Aligned_cols=240  Identities=19%  Similarity=0.304  Sum_probs=184.6

Q ss_pred             hhcccccCCCeEEEEEEE----CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCcee
Q 006019          374 FSNVIGSSPIGTVYKGTL----SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~----~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~  448 (664)
                      +.+.||+|+||.||+++.    .++..+|+|++....... .....+.+..|++++.++ +|+||+++++++...+  ..
T Consensus         4 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~--~~   80 (332)
T cd05614           4 LLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQ-KAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEA--KL   80 (332)
T ss_pred             EEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhh-hhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCC--EE
Confidence            457899999999999885    357899999986433211 122345688999999999 4999999999988776  67


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++||||+++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...
T Consensus        81 ~lv~e~~~~g~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~  156 (332)
T cd05614          81 HLILDYVSGGEMFTHLYQ--RDNFSEDEVRFYSGEIILALEHLHKLG--IVYRDIKLENILLDSEGHVVLTDFGLSKEFL  156 (332)
T ss_pred             EEEEeCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--cEecCCCHHHeEECCCCCEEEeeCcCCcccc
Confidence            999999999999999863  346889999999999999999999998  9999999999999999999999999987542


Q ss_pred             h----------hhhhcccccccCCC-CCCcCCcchhhHHHHHHHHhCCCCccCCCC--ChHHHHHHHhcCCCCCccccCC
Q 006019          529 M----------AEMAATSKKLSSAP-SASLESNVYNFGVLLFEMVTGRLPYLVDNG--SLEDWAADYLSGVQPLQQFVDP  595 (664)
Q Consensus       529 ~----------~~~~~~~pe~~~~~-~~s~ksDVySfGvvl~El~tG~~P~~~~~~--~~~~~~~~~~~~~~~~~~~~d~  595 (664)
                      .          ....+.+||..... ..+.++|||||||++|||+||+.||.....  ............        ++
T Consensus       157 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~--------~~  228 (332)
T cd05614         157 SEEKERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGERNTQSEVSRRILKC--------DP  228 (332)
T ss_pred             ccCCCccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCCCCCCCHHHHHHHHhcC--------CC
Confidence            1          12345577766543 468899999999999999999999953221  222222222211        11


Q ss_pred             CCCCCCHHHHHHHHHHHHHhccCCCCCCC-----CHHHHHH
Q 006019          596 TLSSFDEEQLETLGELIKSCVRADPEKRP-----TMRDIAA  631 (664)
Q Consensus       596 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RP-----s~~ev~~  631 (664)
                      .   .+......+.+++.+||+.||++||     +++++++
T Consensus       229 ~---~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~  266 (332)
T cd05614         229 P---FPSFIGPEAQDLLHKLLRKDPKKRLGAGPQGASEIKE  266 (332)
T ss_pred             C---CCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHHc
Confidence            1   1122335688999999999999999     6667764

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=7.4e-34  Score=299.09  Aligned_cols=233  Identities=19%  Similarity=0.220  Sum_probs=183.1

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeEEEEE
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.||+|+||.||+|+.. +++.+|+|++.......  ....+.+.+|+.++.++ +||||+++++++...+  ..++|||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~--~~~lv~e   76 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHD--DEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTS--RLFLVIE   76 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCC--EEEEEEe
Confidence            36999999999999964 57889999987543222  22345688999999888 6999999999998776  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|+|.+++..  ...+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....    
T Consensus        77 ~~~~~~L~~~~~~--~~~l~~~~~~~~~~qi~~al~~lH~~~--ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~  152 (327)
T cd05617          77 YVNGGDLMFHMQR--QRKLPEEHARFYAAEICIALNFLHERG--IIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDT  152 (327)
T ss_pred             CCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCCHHHEEEeCCCCEEEeccccceeccCCCCc
Confidence            9999999988752  346999999999999999999999998  99999999999999999999999999875311    


Q ss_pred             -----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCC----CCChHHHHHHHhcCCCCCccccCCCCCCC
Q 006019          530 -----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVD----NGSLEDWAADYLSGVQPLQQFVDPTLSSF  600 (664)
Q Consensus       530 -----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~----~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  600 (664)
                           ....+.+||......++.++|||||||++|||+||+.||...    .....++.........          ...
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~----------~~~  222 (327)
T cd05617         153 TSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVILEKP----------IRI  222 (327)
T ss_pred             eecccCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCccCCCcccccHHHHHHHHHhCC----------CCC
Confidence                 123456788887788899999999999999999999999521    1122233332222110          011


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCCH
Q 006019          601 DEEQLETLGELIKSCVRADPEKRPTM  626 (664)
Q Consensus       601 ~~~~~~~l~~l~~~Cl~~~P~~RPs~  626 (664)
                      +......+.+++.+|++.||++|+++
T Consensus       223 p~~~~~~~~~li~~~L~~dP~~R~~~  248 (327)
T cd05617         223 PRFLSVKASHVLKGFLNKDPKERLGC  248 (327)
T ss_pred             CCCCCHHHHHHHHHHhccCHHHcCCC
Confidence            22233567899999999999999984

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=8.4e-34  Score=288.02  Aligned_cols=244  Identities=24%  Similarity=0.290  Sum_probs=186.6

Q ss_pred             hcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCC---c------hhHHHHHHHHHHHHhccCCCcccceEEEEecCC
Q 006019          375 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDW---P------KNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE  444 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~---~------~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~  444 (664)
                      ...||+|.||.|-+|+. .+++.||+|++........   .      ....+...+||.+|++++|||||+|+.+..+..
T Consensus       102 ~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~LiEvLDDP~  181 (576)
T KOG0585|consen  102 IKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKLIEVLDDPE  181 (576)
T ss_pred             hhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEEEEeecCcc
Confidence            46799999999999994 4789999999975443210   0      011357899999999999999999999998877


Q ss_pred             CceeEEEEEecCCCChhhhhcccCCCC-CCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCc
Q 006019          445 PFTRMMVFEYAPNGTLFEHIHIKESEH-LDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF  523 (664)
Q Consensus       445 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~-l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGl  523 (664)
                      ....|||+|||..|.+...   ..... ++..+..++.+++..||+|||.++  ||||||||+|+||++++.+||+|||.
T Consensus       182 s~~~YlVley~s~G~v~w~---p~d~~els~~~Ar~ylrDvv~GLEYLH~Qg--iiHRDIKPsNLLl~~~g~VKIsDFGV  256 (576)
T KOG0585|consen  182 SDKLYLVLEYCSKGEVKWC---PPDKPELSEQQARKYLRDVVLGLEYLHYQG--IIHRDIKPSNLLLSSDGTVKISDFGV  256 (576)
T ss_pred             cCceEEEEEeccCCccccC---CCCcccccHHHHHHHHHHHHHHHHHHHhcC--eeccccchhheEEcCCCcEEeeccce
Confidence            6688999999999988543   22333 999999999999999999999999  99999999999999999999999998


Q ss_pred             hhhhhh--------------hhhhcccccccCCC----CCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcC
Q 006019          524 WNEIAM--------------AEMAATSKKLSSAP----SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG  585 (664)
Q Consensus       524 a~~~~~--------------~~~~~~~pe~~~~~----~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~  585 (664)
                      +.....              ++.+..+||...++    ..+.+-||||+||+||=|+.|+.||..+  ...+....+..+
T Consensus       257 s~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~--~~~~l~~KIvn~  334 (576)
T KOG0585|consen  257 SNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDD--FELELFDKIVND  334 (576)
T ss_pred             eeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccc--hHHHHHHHHhcC
Confidence            775521              12233456654432    2467889999999999999999999432  223333333332


Q ss_pred             CCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 006019          586 VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR  634 (664)
Q Consensus       586 ~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~  634 (664)
                      .-.         -...++..+.+.+|+.+.+.+||++|.+..+|....-
T Consensus       335 pL~---------fP~~pe~~e~~kDli~~lL~KdP~~Ri~l~~ik~Hpw  374 (576)
T KOG0585|consen  335 PLE---------FPENPEINEDLKDLIKRLLEKDPEQRITLPDIKLHPW  374 (576)
T ss_pred             ccc---------CCCcccccHHHHHHHHHHhhcChhheeehhhheecce
Confidence            111         0112234567899999999999999999998876544

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=5.8e-34  Score=305.99  Aligned_cols=241  Identities=16%  Similarity=0.241  Sum_probs=183.3

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+++.. +++.+|+|.+.......  ......+.+|++++++++|+||+++++++.+.+  ..++||
T Consensus         5 ~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~--~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~--~~~lv~   80 (376)
T cd05598           5 KIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLM--RNQAAHVKAERDILAEADNEWVVKLYYSFQDKD--NLYFVM   80 (376)
T ss_pred             EEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHh--hhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCC--EEEEEE
Confidence            3478999999999999964 58899999986432211  123456889999999999999999999998877  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh----
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA----  528 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~----  528 (664)
                      ||+++|+|.+++..  ...++......++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||++..+.    
T Consensus        81 E~~~~g~L~~~i~~--~~~~~~~~~~~~~~qi~~al~~lH~~~--ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~~~~~  156 (376)
T cd05598          81 DYIPGGDMMSLLIR--LGIFEEDLARFYIAELTCAIESVHKMG--FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHD  156 (376)
T ss_pred             eCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEeCCCCHHHEEECCCCCEEEEeCCCCcccccccc
Confidence            99999999999863  346788888889999999999999998  9999999999999999999999999974221    


Q ss_pred             ------------------------------------------------hhhhhcccccccCCCCCCcCCcchhhHHHHHH
Q 006019          529 ------------------------------------------------MAEMAATSKKLSSAPSASLESNVYNFGVLLFE  560 (664)
Q Consensus       529 ------------------------------------------------~~~~~~~~pe~~~~~~~s~ksDVySfGvvl~E  560 (664)
                                                                      .+...+.+||......++.++|||||||++||
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilye  236 (376)
T cd05598         157 SKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYE  236 (376)
T ss_pred             ccccccccccccccccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeeeccceeee
Confidence                                                            01223556777777778999999999999999


Q ss_pred             HHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCC---CHHHHHHH
Q 006019          561 MVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRP---TMRDIAAI  632 (664)
Q Consensus       561 l~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RP---s~~ev~~~  632 (664)
                      |+||+.||....  ..++...........   ..+..    ......+.+++.+|+ .+|++|+   ++.++++.
T Consensus       237 ll~G~~Pf~~~~--~~~~~~~i~~~~~~~---~~~~~----~~~s~~~~~li~~l~-~~p~~R~~~~t~~ell~h  301 (376)
T cd05598         237 MLVGQPPFLADT--PAETQLKVINWETTL---HIPSQ----AKLSREASDLILRLC-CGAEDRLGKNGADEIKAH  301 (376)
T ss_pred             hhhCCCCCCCCC--HHHHHHHHhccCccc---cCCCC----CCCCHHHHHHHHHHh-cCHhhcCCCCCHHHHhCC
Confidence            999999995332  223222222111110   11111    112345677888876 5999999   78888754

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=100.00  E-value=2.4e-33  Score=286.01  Aligned_cols=241  Identities=20%  Similarity=0.307  Sum_probs=188.4

Q ss_pred             hcccccCCCeEEEEEEECCCcEEEEEEeeecccCC-CchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKD-WPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~-~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||+|...++..+|+|.+....... ........+.+|++++++++|+||+++++++.+.+  ..++|+|
T Consensus         5 ~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~lv~e   82 (265)
T cd06631           5 GEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDN--TISIFME   82 (265)
T ss_pred             cceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCC--eEEEEEe
Confidence            46799999999999998889999999886543211 11233456899999999999999999999998876  7799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|+|.+++..  ...+++.....++.+++.|++|||+.+  ++|+||+|+||++++++.+||+|||+++....    
T Consensus        83 ~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~  158 (265)
T cd06631          83 FVPGGSISSILNR--FGPLPEPVFCKYTKQILDGVAYLHNNC--VVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLH  158 (265)
T ss_pred             cCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCcCHHhEEECCCCeEEeccchhhHhhhhcccc
Confidence            9999999999863  345889999999999999999999988  99999999999999999999999999876521    


Q ss_pred             -----------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 006019          530 -----------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       530 -----------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                                 ....+.+||......++.++|||||||++|||+||+.||.... ...... .........     +   
T Consensus       159 ~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~-~~~~~~-~~~~~~~~~-----~---  228 (265)
T cd06631         159 GTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMD-RLAAMF-YIGAHRGLM-----P---  228 (265)
T ss_pred             ccccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCC-hHHHHH-HhhhccCCC-----C---
Confidence                       1123456777777778899999999999999999999994321 111111 111110010     1   


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ..+.....++.+++.+||+.+|++||++.++++
T Consensus       229 ~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~  261 (265)
T cd06631         229 RLPDSFSAAAIDFVTSCLTRDQHERPSALQLLR  261 (265)
T ss_pred             CCCCCCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            112223456889999999999999999998875

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=100.00  E-value=2.4e-33  Score=288.12  Aligned_cols=235  Identities=16%  Similarity=0.240  Sum_probs=189.2

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||+|... ++..+|+|.+.....    ......+.+|++++++++|+||+++++++.+..  ..++|||
T Consensus         9 ~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~e   82 (277)
T cd06640           9 LERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEA----EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGT--KLWIIME   82 (277)
T ss_pred             hhhcccCCCeEEEEEEEccCCEEEEEEEEecccc----HHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECC--EEEEEEe
Confidence            467999999999999965 588999998864321    234567999999999999999999999998876  7799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      |+++|+|.+++..   ..+++.....++.+++.|++|||+.+  ++|+||+|+||+++.++.++|+|||++......   
T Consensus        83 ~~~~~~L~~~i~~---~~l~~~~~~~~~~~l~~~l~~lh~~~--ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~  157 (277)
T cd06640          83 YLGGGSALDLLRA---GPFDEFQIATMLKEILKGLDYLHSEK--KIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIK  157 (277)
T ss_pred             cCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCC--ccCcCCChhhEEEcCCCCEEEcccccceeccCCccc
Confidence            9999999998853   45888999999999999999999988  999999999999999999999999998665321   


Q ss_pred             ------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          531 ------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       531 ------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                            ...+.+||.......+.++|||||||++|||+||+.||....  ..........          ..........
T Consensus       158 ~~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~--~~~~~~~~~~----------~~~~~~~~~~  225 (277)
T cd06640         158 RNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMH--PMRVLFLIPK----------NNPPTLTGEF  225 (277)
T ss_pred             cccccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcC--hHhHhhhhhc----------CCCCCCchhh
Confidence                  123457887777778999999999999999999999984321  1111111100          0111234456


Q ss_pred             HHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          605 LETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      +..+.+++.+||+.+|++||++.++++.
T Consensus       226 ~~~~~~li~~~l~~~p~~Rp~~~~il~~  253 (277)
T cd06640         226 SKPFKEFIDACLNKDPSFRPTAKELLKH  253 (277)
T ss_pred             hHHHHHHHHHHcccCcccCcCHHHHHhC
Confidence            6778999999999999999999999765

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=100.00  E-value=2.4e-33  Score=288.52  Aligned_cols=236  Identities=20%  Similarity=0.285  Sum_probs=184.8

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+. .++..+|+|.+....    .....++|.+|++++++++||||+++++++...+  ..++||
T Consensus         5 ~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~----~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~   78 (279)
T cd06619           5 YQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDI----TVELQKQIMSELEILYKCDSPYIIGFYGAFFVEN--RISICT   78 (279)
T ss_pred             heeeeccCCCeEEEEEEEcCCCcEEEEEEEecCC----ChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECC--EEEEEE
Confidence            347899999999999985 468899999886432    1234567999999999999999999999998877  678999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++|+|..+.      .+++.....++.+++.|++|||+.+  ++|+||||+||+++.++.+||+|||++......  
T Consensus        79 e~~~~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~~~  150 (279)
T cd06619          79 EFMDGGSLDVYR------KIPEHVLGRIAVAVVKGLTYLWSLK--ILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSIA  150 (279)
T ss_pred             ecCCCCChHHhh------cCCHHHHHHHHHHHHHHHHHHHHCC--EeeCCCCHHHEEECCCCCEEEeeCCcceecccccc
Confidence            999999996543      3678888999999999999999998  999999999999999999999999998754321  


Q ss_pred             -----hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCC-----hHHHHHHHhcCCCCCccccCCCCCCC
Q 006019          531 -----EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGS-----LEDWAADYLSGVQPLQQFVDPTLSSF  600 (664)
Q Consensus       531 -----~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~-----~~~~~~~~~~~~~~~~~~~d~~~~~~  600 (664)
                           ...+.+||......++.++||||||+++|||+||+.||......     ..++....... .      .+...  
T Consensus       151 ~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~--  221 (279)
T cd06619         151 KTYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLLQCIVDE-D------PPVLP--  221 (279)
T ss_pred             cCCCCChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhcccccccchHHHHHHHhcc-C------CCCCC--
Confidence                 23456788887778899999999999999999999999532111     11111111111 0      11111  


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          601 DEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       601 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      ......++.+++.+||+.+|++||+++|+++.
T Consensus       222 ~~~~~~~~~~li~~~l~~~P~~Rp~~~eil~~  253 (279)
T cd06619         222 VGQFSEKFVHFITQCMRKQPKERPAPENLMDH  253 (279)
T ss_pred             CCcCCHHHHHHHHHHhhCChhhCCCHHHHhcC
Confidence            11123468899999999999999999998764

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=100.00  E-value=6.9e-33  Score=285.41  Aligned_cols=237  Identities=17%  Similarity=0.195  Sum_probs=183.7

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||+|... ++..+++|.+....     ....+.|.+|+++++.++|+||+++++++...+  ..++|+|
T Consensus        10 ~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~-----~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~--~~~~v~e   82 (282)
T cd06643          10 IGELGDGAFGKVYKAQNKETGVLAAAKVIDTKS-----EEELEDYMVEIDILASCDHPNIVKLLDAFYYEN--NLWILIE   82 (282)
T ss_pred             HhhcccCCCeEEEEEEECCCCeEEEEEEeCCCC-----HHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCC--EEEEEEE
Confidence            467999999999999975 46777888774322     233567899999999999999999999998776  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|+|.++++. ....+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++....    
T Consensus        83 ~~~~~~l~~~~~~-~~~~l~~~~~~~~~~qi~~~L~~LH~~~--i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~  159 (282)
T cd06643          83 FCAGGAVDAVMLE-LERPLTEPQIRVVCKQTLEALNYLHENK--IIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQR  159 (282)
T ss_pred             ecCCCcHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeecCCCcccEEEccCCCEEEccccccccccccccc
Confidence            9999999888763 2356899999999999999999999998  99999999999999999999999999865421    


Q ss_pred             -----hhhhcccccccC-----CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 006019          530 -----AEMAATSKKLSS-----APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  599 (664)
Q Consensus       530 -----~~~~~~~pe~~~-----~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  599 (664)
                           ....+.+||+..     ...++.++|||||||++|||++|+.||...  ...+..........  ...      .
T Consensus       160 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~--~~~~~~~~~~~~~~--~~~------~  229 (282)
T cd06643         160 RDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHEL--NPMRVLLKIAKSEP--PTL------A  229 (282)
T ss_pred             cccccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCcccc--CHHHHHHHHhhcCC--CCC------C
Confidence                 122345677642     344678999999999999999999998432  22222222221110  011      1


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          600 FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       600 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .+...+.++.+++.+||+.+|++||++.++++
T Consensus       230 ~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  261 (282)
T cd06643         230 QPSRWSSEFKDFLKKCLEKNVDARWTTTQLLQ  261 (282)
T ss_pred             CccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            12223456889999999999999999998764

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=4.9e-34  Score=295.99  Aligned_cols=241  Identities=19%  Similarity=0.266  Sum_probs=202.3

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      ..+++|+|+||.++..+.+ ++..+++|.+......+   ...+...+|+.++++++|||||.+...+.+++. ..+|||
T Consensus         8 ~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~---~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~-~l~Ivm   83 (426)
T KOG0589|consen    8 VLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTE---PERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQ-LLCIVM   83 (426)
T ss_pred             hhhhcCccccchhhhhhhccCCceEEEEEEeccccCc---hhhHHHHHHHHHHHhccCCCeeeeccchhcCCc-eEEEEE
Confidence            3478999999999998864 57789999998776544   334578899999999999999999999988772 289999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhhh-
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  531 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~~-  531 (664)
                      +|++||++.+.+....+..+...+..++..|++.|+.|||+.+  |+|||||+.||+++.+..+||+|||+|+.+.... 
T Consensus        84 ~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~~--iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~~~  161 (426)
T KOG0589|consen   84 EYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHENR--VLHRDLKCANIFLTKDKKVKLGDFGLAKILNPEDS  161 (426)
T ss_pred             eecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhhh--hhcccchhhhhhccccCceeecchhhhhhcCCchh
Confidence            9999999999997666778899999999999999999999888  9999999999999999999999999999885432 


Q ss_pred             --------hhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          532 --------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       532 --------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                              ..+..||......+..|+||||+||++|||++=+.+|.  ..+....+..+....          ....+..
T Consensus       162 ~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~--a~~m~~Li~ki~~~~----------~~Plp~~  229 (426)
T KOG0589|consen  162 LASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFK--ASNMSELILKINRGL----------YSPLPSM  229 (426)
T ss_pred             hhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccC--ccchHHHHHHHhhcc----------CCCCCcc
Confidence                    34556888888999999999999999999999999994  333444444444331          2233455


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      ...++..++..|++.+|+.||++.+++.+
T Consensus       230 ys~el~~lv~~~l~~~P~~RPsa~~LL~~  258 (426)
T KOG0589|consen  230 YSSELRSLVKSMLRKNPEHRPSALELLRR  258 (426)
T ss_pred             ccHHHHHHHHHHhhcCCccCCCHHHHhhC
Confidence            55679999999999999999999999886

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=100.00  E-value=2.8e-33  Score=283.70  Aligned_cols=236  Identities=20%  Similarity=0.271  Sum_probs=188.2

Q ss_pred             hhcccccCCCeEEEEEEECC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|...+ +..+++|.+....       ..++|.+|++++++++|+||+++++++....  ..++++
T Consensus         7 ~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~-------~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~--~~~l~~   77 (256)
T cd06612           7 ILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEE-------DLQEIIKEISILKQCDSPYIVKYYGSYFKNT--DLWIVM   77 (256)
T ss_pred             hhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHH-------HHHHHHHHHHHHHhCCCCcEeeeeeeeecCC--cEEEEE
Confidence            44789999999999999765 7889999885432       1568999999999999999999999998876  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++++|.+++.. ....+++.....++.+++.|+.|||+.+  ++||||+|+||++++++.+||+|||++......  
T Consensus        78 e~~~~~~L~~~l~~-~~~~l~~~~~~~~~~~l~~~l~~lh~~~--i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~  154 (256)
T cd06612          78 EYCGAGSVSDIMKI-TNKTLTEEEIAAILYQTLKGLEYLHSNK--KIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMA  154 (256)
T ss_pred             ecCCCCcHHHHHHh-CccCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCcceEEECCCCcEEEcccccchhcccCcc
Confidence            99999999999863 3457899999999999999999999998  999999999999999999999999998765322  


Q ss_pred             -------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          531 -------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       531 -------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                             ...+.+||......++.++|||||||++|||+||+.||.....  .+-......       ...+. ...+..
T Consensus       155 ~~~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~--~~~~~~~~~-------~~~~~-~~~~~~  224 (256)
T cd06612         155 KRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHP--MRAIFMIPN-------KPPPT-LSDPEK  224 (256)
T ss_pred             ccccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcch--hhhhhhhcc-------CCCCC-CCchhh
Confidence                   1234567877777789999999999999999999999842211  111100000       00011 112233


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ....+.+++.+||+.+|++||++.|+++
T Consensus       225 ~~~~~~~~i~~~l~~~P~~Rps~~~il~  252 (256)
T cd06612         225 WSPEFNDFVKKCLVKDPEERPSAIQLLQ  252 (256)
T ss_pred             cCHHHHHHHHHHHhcChhhCcCHHHHhc
Confidence            4457899999999999999999999875

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=100.00  E-value=1.5e-33  Score=291.10  Aligned_cols=250  Identities=18%  Similarity=0.211  Sum_probs=183.8

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc---CCCcccceEEEEecCC---Cc
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV---NHKNFVNLIGFCEEEE---PF  446 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l---~H~niv~l~g~~~~~~---~~  446 (664)
                      +.+.||+|+||.||+|+.. +++.+|+|.+.......   .....+.+|+++++++   +||||+++++++....   ..
T Consensus         4 ~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~---~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~   80 (288)
T cd07863           4 PVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNED---GLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRET   80 (288)
T ss_pred             EeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCC---CCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCc
Confidence            3478999999999999965 68899999887543222   1223456677777665   7999999999986422   22


Q ss_pred             eeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhh
Q 006019          447 TRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  526 (664)
Q Consensus       447 ~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~  526 (664)
                      ..++||||++ ++|.+++.......+++.....++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++.
T Consensus        81 ~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~--ivH~dikp~Nili~~~~~~kl~dfg~~~~  157 (288)
T cd07863          81 KVTLVFEHVD-QDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHANC--IVHRDLKPENILVTSGGQVKLADFGLARI  157 (288)
T ss_pred             eEEEEEcccc-cCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEECCCCCEEECccCcccc
Confidence            4689999997 48988887555556899999999999999999999998  99999999999999999999999999876


Q ss_pred             hhhh--------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcC-----CCCCc---
Q 006019          527 IAMA--------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG-----VQPLQ---  590 (664)
Q Consensus       527 ~~~~--------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~-----~~~~~---  590 (664)
                      ....        ...+.+||......++.++|||||||++|||++|+.||.....  .+........     .....   
T Consensus       158 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  235 (288)
T cd07863         158 YSCQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSE--ADQLGKIFDLIGLPPEDDWPRDV  235 (288)
T ss_pred             ccCcccCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCCH--HHHHHHHHHHhCCCChhhCcccc
Confidence            5321        2345678887777889999999999999999999999843221  1111111100     00000   


Q ss_pred             ----cccCCCC----CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          591 ----QFVDPTL----SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       591 ----~~~d~~~----~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                          ....+..    ....+.....+.+++.+|++.||++||++.|++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l~  284 (288)
T cd07863         236 TLPRGAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQ  284 (288)
T ss_pred             cccccccCCCCCCchHHhCcCcCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence                0000000    0111233456889999999999999999998874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=1.2e-33  Score=291.96  Aligned_cols=232  Identities=19%  Similarity=0.254  Sum_probs=182.8

Q ss_pred             cccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      .+||+|+||.||.++- .+|..+|+|++++.....  ....+..+.|-.+|...++|+||+|+-.+.+.+  ..||||||
T Consensus       147 k~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~--~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~--~LYLiMEy  222 (550)
T KOG0605|consen  147 KVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLK--KNQVEHVRAERDILAEVDSPWVVKLYYSFQDKE--YLYLIMEY  222 (550)
T ss_pred             eeeccccceeEEEEEEccCCcEEeeecccHHHHHh--hhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCC--eeEEEEEe
Confidence            7899999999999994 569999999998765543  345577899999999999999999998888877  88999999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh----
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA----  530 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~----  530 (664)
                      +|||++..+|.  ....|+.......+.+++-|++-+|+.+  +|||||||+|+|||..|.+||+|||++..+...    
T Consensus       223 lPGGD~mTLL~--~~~~L~e~~arfYiaE~vlAI~~iH~~g--yIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~~~~~~~  298 (550)
T KOG0605|consen  223 LPGGDMMTLLM--RKDTLTEDWARFYIAETVLAIESIHQLG--YIHRDIKPDNLLIDAKGHIKLSDFGLSTGLDKKHRIE  298 (550)
T ss_pred             cCCccHHHHHH--hcCcCchHHHHHHHHHHHHHHHHHHHcC--cccccCChhheeecCCCCEeeccccccchhhhhhhhh
Confidence            99999999985  4567888888888999999999999999  999999999999999999999999997533110    


Q ss_pred             ----------------------------------------------------hhhcccccccCCCCCCcCCcchhhHHHH
Q 006019          531 ----------------------------------------------------EMAATSKKLSSAPSASLESNVYNFGVLL  558 (664)
Q Consensus       531 ----------------------------------------------------~~~~~~pe~~~~~~~s~ksDVySfGvvl  558 (664)
                                                                          +..+.+||...+..++..+|.||+|||+
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwWSLG~Im  378 (550)
T KOG0605|consen  299 SYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWSLGCIM  378 (550)
T ss_pred             hhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCccccHHHHHHHH
Confidence                                                                0011245555666688999999999999


Q ss_pred             HHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCC
Q 006019          559 FEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT  625 (664)
Q Consensus       559 ~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs  625 (664)
                      |||+.|.+||..  ....+..+.++.....+....+       .....++.+||.+|+. ||++|..
T Consensus       379 yEmLvGyPPF~s--~tp~~T~rkI~nwr~~l~fP~~-------~~~s~eA~DLI~rll~-d~~~RLG  435 (550)
T KOG0605|consen  379 YEMLVGYPPFCS--ETPQETYRKIVNWRETLKFPEE-------VDLSDEAKDLITRLLC-DPENRLG  435 (550)
T ss_pred             HHHHhCCCCCCC--CCHHHHHHHHHHHhhhccCCCc-------CcccHHHHHHHHHHhc-CHHHhcC
Confidence            999999999943  3333333333332211111111       1122678999999998 9999976

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=100.00  E-value=2.9e-33  Score=283.77  Aligned_cols=240  Identities=21%  Similarity=0.318  Sum_probs=189.6

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||+|... ++..+++|.+.............+.+.+|++++++++|+||+++++++....  ..++++|
T Consensus         5 ~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~--~~~lv~e   82 (258)
T cd06632           5 GELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREED--NLYIFLE   82 (258)
T ss_pred             cceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCC--eEEEEEE
Confidence            467999999999999976 7899999998765443333445678999999999999999999999998776  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      |+++++|.++++.  ...+++..+..++.+++.|++|||+.+  ++|+||+|+||+++.++.+||+|||++......   
T Consensus        83 ~~~~~~L~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~~~  158 (258)
T cd06632          83 LVPGGSLAKLLKK--YGSFPEPVIRLYTRQILLGLEYLHDRN--TVHRDIKGANILVDTNGVVKLADFGMAKQVVEFSFA  158 (258)
T ss_pred             ecCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEECCCCCEEEccCccceeccccccc
Confidence            9999999999863  345889999999999999999999998  999999999999999999999999988754322   


Q ss_pred             -----hhhcccccccCCCC-CCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          531 -----EMAATSKKLSSAPS-ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       531 -----~~~~~~pe~~~~~~-~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                           ...+.+||...... ++.++|+|||||++|||++|+.||....  ..+........ ..        ....+...
T Consensus       159 ~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~--~~~~~~~~~~~-~~--------~~~~~~~~  227 (258)
T cd06632         159 KSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLE--GVAAVFKIGRS-KE--------LPPIPDHL  227 (258)
T ss_pred             cccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCc--HHHHHHHHHhc-cc--------CCCcCCCc
Confidence                 12345677655544 7889999999999999999999984322  11221111110 00        11112233


Q ss_pred             HHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          605 LETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ...+.+++.+||+.+|++||++.+++.
T Consensus       228 ~~~~~~li~~~l~~~p~~Rp~~~~~l~  254 (258)
T cd06632         228 SDEAKDFILKCLQRDPSLRPTAAELLE  254 (258)
T ss_pred             CHHHHHHHHHHhhcCcccCcCHHHHhc
Confidence            456889999999999999999999875

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=100.00  E-value=1.3e-33  Score=288.72  Aligned_cols=247  Identities=19%  Similarity=0.308  Sum_probs=190.6

Q ss_pred             hhcccccCCCeEEEEEEECC--CcEEEEEEeeecccCC-----CchhHHHHHHHHHHHHhc-cCCCcccceEEEEecCCC
Q 006019          374 FSNVIGSSPIGTVYKGTLSN--GVEIAVASVSVASAKD-----WPKNLEVQFRKKIDTLSK-VNHKNFVNLIGFCEEEEP  445 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~--~~~vavk~~~~~~~~~-----~~~~~~~~f~~E~~~l~~-l~H~niv~l~g~~~~~~~  445 (664)
                      +.+.||+|+||.||+|....  +..+|+|.+.......     .......++.+|+.++.+ ++||||+++++++.+.+ 
T Consensus         4 ~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~-   82 (269)
T cd08528           4 VLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLEND-   82 (269)
T ss_pred             hhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEccCC-
Confidence            34789999999999999765  6789999886433211     112334567889998875 79999999999998877 


Q ss_pred             ceeEEEEEecCCCChhhhhcc--cCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEEeCcCCCCeEecCCCceEecccC
Q 006019          446 FTRMMVFEYAPNGTLFEHIHI--KESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLS  522 (664)
Q Consensus       446 ~~~~lV~Ey~~~GsL~~~l~~--~~~~~l~~~~~~~ia~~ia~gL~yLH~-~~~~ivHrDLk~~NILld~~~~~kl~DfG  522 (664)
                       ..++||||+++++|.+++..  .....+++..+.+++.+++.|+.|||+ .+  ++|+||+|+||++++++.+||+|||
T Consensus        83 -~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~--i~H~dl~~~nil~~~~~~~~l~dfg  159 (269)
T cd08528          83 -RLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKR--IVHRDLTPNNIMLGEDDKVTITDFG  159 (269)
T ss_pred             -eEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCCc--eeecCCCHHHEEECCCCcEEEeccc
Confidence             67999999999999988743  234568999999999999999999996 56  9999999999999999999999999


Q ss_pred             chhhhhhh--------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccC
Q 006019          523 FWNEIAMA--------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD  594 (664)
Q Consensus       523 la~~~~~~--------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d  594 (664)
                      ++......        ...+.+||......++.++||||||+++|||++|+.||..  ..............  ..... 
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~--~~~~~~~~~~~~~~--~~~~~-  234 (269)
T cd08528         160 LAKQKQPESKLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYS--TNMLSLATKIVEAV--YEPLP-  234 (269)
T ss_pred             ceeecccccccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccc--cCHHHHHHHHhhcc--CCcCC-
Confidence            98765322        2234567777777789999999999999999999999842  22233332222211  11000 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHh
Q 006019          595 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  635 (664)
Q Consensus       595 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~  635 (664)
                            .......+.+++.+||+.||++||++.|+..++++
T Consensus       235 ------~~~~~~~l~~li~~cl~~~p~~Rp~~~e~~~~~~~  269 (269)
T cd08528         235 ------EGMYSEDVTDVITSCLTPDAEARPDIIQVSAMISD  269 (269)
T ss_pred             ------cccCCHHHHHHHHHHCCCCCccCCCHHHHHHHhcC
Confidence                  11223568899999999999999999999998863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=100.00  E-value=9.7e-34  Score=292.02  Aligned_cols=248  Identities=17%  Similarity=0.227  Sum_probs=184.6

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. ++..+|+|++......   ......+.+|+.++++++||||+++++++.+++  ..++|+
T Consensus         4 ~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~~v~   78 (285)
T cd07861           4 KIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEE---EGVPSTAIREISLLKELQHPNIVCLQDVLMQES--RLYLIF   78 (285)
T ss_pred             EeeEecccCceEEEEEEECCCCcEEEEEEecccccc---CCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCC--eEEEEE
Confidence            3478999999999999975 6889999988654322   123457889999999999999999999998776  679999


Q ss_pred             EecCCCChhhhhcccC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh-
Q 006019          453 EYAPNGTLFEHIHIKE-SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~-~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~-  530 (664)
                      ||++ |+|.+++.... ...+++.....++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++..... 
T Consensus        79 e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~--i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~  155 (285)
T cd07861          79 EFLS-MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRR--VLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPV  155 (285)
T ss_pred             ecCC-CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhCC--eeecCCCHHHEEEcCCCcEEECcccceeecCCCc
Confidence            9997 68988876432 357899999999999999999999998  999999999999999999999999998754211 


Q ss_pred             --------hhhcccccccC-CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCC-----------C--
Q 006019          531 --------EMAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-----------P--  588 (664)
Q Consensus       531 --------~~~~~~pe~~~-~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~-----------~--  588 (664)
                              ...+.+||... ...++.++|||||||++|||+||+.||.....  .+..........           .  
T Consensus       156 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (285)
T cd07861         156 RVYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDSE--IDQLFRIFRILGTPTEDVWPGVTSLP  233 (285)
T ss_pred             ccccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHHHhCCCChhhhhcchhhH
Confidence                    23345677654 34568899999999999999999999953221  111111110000           0  


Q ss_pred             -----CccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          589 -----LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       589 -----~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                           ..................++.+++.+||+.||++||++.+|++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ll~  281 (285)
T cd07861         234 DYKNTFPKWKKGSLRSAVKNLDEDGLDLLEKMLIYDPAKRISAKKALN  281 (285)
T ss_pred             HHHhhccccCcchhHHhcCCCCHHHHHHHHHHhcCChhhCCCHHHHhc
Confidence                 0000000000011123456789999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=100.00  E-value=5.4e-33  Score=283.45  Aligned_cols=241  Identities=15%  Similarity=0.208  Sum_probs=186.6

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||+|... ++..|++|.+.............+.+.+|++++++++|+||+++++++.+......++|||
T Consensus         7 ~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~v~e   86 (265)
T cd06652           7 GKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTLSIFME   86 (265)
T ss_pred             eeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceEEEEEE
Confidence            478999999999999964 5889999988643322222334567899999999999999999999987654335689999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|+|.+++..  ...+++....+++.+++.||+|||+++  ++|+||||+||+++.++.+||+|||+++....    
T Consensus        87 ~~~~~~L~~~l~~--~~~~~~~~~~~~~~~l~~~l~~lH~~~--i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~~~~~  162 (265)
T cd06652          87 HMPGGSIKDQLKS--YGALTENVTRKYTRQILEGVSYLHSNM--IVHRDIKGANILRDSVGNVKLGDFGASKRLQTICLS  162 (265)
T ss_pred             ecCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHhCC--EecCCCCHHHEEecCCCCEEECcCcccccccccccc
Confidence            9999999998863  245788889999999999999999998  99999999999999999999999998875421    


Q ss_pred             --------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 006019          530 --------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  601 (664)
Q Consensus       530 --------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  601 (664)
                              ....+.+||.......+.++|||||||++|||++|+.||... ..... .......         +.....+
T Consensus       163 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~-~~~~~-~~~~~~~---------~~~~~~~  231 (265)
T cd06652         163 GTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEF-EAMAA-IFKIATQ---------PTNPVLP  231 (265)
T ss_pred             ccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCcc-chHHH-HHHHhcC---------CCCCCCc
Confidence                    122356788777777889999999999999999999998422 11111 1111111         1111223


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          602 EEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       602 ~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ......+.+++.+||. +|++||+++||++
T Consensus       232 ~~~~~~~~~~i~~~l~-~p~~Rp~~~~il~  260 (265)
T cd06652         232 PHVSDHCRDFLKRIFV-EAKLRPSADELLR  260 (265)
T ss_pred             hhhCHHHHHHHHHHhc-ChhhCCCHHHHhc
Confidence            4445668889999995 8999999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.4e-33  Score=303.49  Aligned_cols=240  Identities=13%  Similarity=0.141  Sum_probs=180.5

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||++.. .+++.||+|...           ...+.+|++++++++|||||++++++....  ..++|+
T Consensus        96 ~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~-----------~~~~~~E~~il~~l~HpnIv~~~~~~~~~~--~~~lv~  162 (391)
T PHA03212         96 ILETFTPGAEGFAFACIDNKTCEHVVIKAGQ-----------RGGTATEAHILRAINHPSIIQLKGTFTYNK--FTCLIL  162 (391)
T ss_pred             EEEEEcCCCCeEEEEEEECCCCCEEEEechh-----------hhhhHHHHHHHHhCCCCCCCCEeEEEEECC--eeEEEE
Confidence            447899999999999996 468889998642           134678999999999999999999998766  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+. ++|.+++..  ...+++..++.|+.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....   
T Consensus       163 e~~~-~~L~~~l~~--~~~l~~~~~~~i~~qi~~aL~ylH~~~--IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~~~  237 (391)
T PHA03212        163 PRYK-TDLYCYLAA--KRNIAICDILAIERSVLRAIQYLHENR--IIHRDIKAENIFINHPGDVCLGDFGAACFPVDINA  237 (391)
T ss_pred             ecCC-CCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCChHhEEEcCCCCEEEEeCCcccccccccc
Confidence            9995 689888753  346899999999999999999999998  99999999999999999999999999864321   


Q ss_pred             -------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCC-----ChHHHHHHHhcCCCCC--------
Q 006019          530 -------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG-----SLEDWAADYLSGVQPL--------  589 (664)
Q Consensus       530 -------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~-----~~~~~~~~~~~~~~~~--------  589 (664)
                             ....+.+||+.....++.++|||||||++|||+||+.|+.....     .........+......        
T Consensus       238 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~  317 (391)
T PHA03212        238 NKYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDA  317 (391)
T ss_pred             cccccccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHHHHHHHHhcCChhhcCcch
Confidence                   12344578888777889999999999999999999988742210     0111111111000000        


Q ss_pred             ----cc---------ccCCCCCCC---CHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          590 ----QQ---------FVDPTLSSF---DEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       590 ----~~---------~~d~~~~~~---~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                          ..         ...+.....   ....+.++.+++.+|++.||++|||++|+++
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~mL~~dP~~Rpta~elL~  375 (391)
T PHA03212        318 QANLDEIYIGLAKKSSRKPGSRPLWTNLYELPIDLEYLICKMLAFDAHHRPSAEALLD  375 (391)
T ss_pred             hHHHHHHHHHHHhccCCCCCCCCCHHHHhhhhhhHHHHHHHHhcCChhhCCCHHHHhc
Confidence                00         000000000   0123457889999999999999999999985

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=100.00  E-value=1.6e-33  Score=296.01  Aligned_cols=233  Identities=16%  Similarity=0.198  Sum_probs=183.3

Q ss_pred             hhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcccceEEEEecCCCceeEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMM  450 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~~~l  450 (664)
                      ++.+.||+|+||.||+|+.. ++..||+|++.......  ....+.+..|..++..+. |++|+++.+++...+  ..++
T Consensus         3 ~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~--~~~l   78 (323)
T cd05615           3 NFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQ--DDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVD--RLYF   78 (323)
T ss_pred             eEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHHhccCCCchhheeeEEecCC--EEEE
Confidence            35588999999999999964 68899999987543211  223456788999998886 577888988887766  6799


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh-
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM-  529 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~-  529 (664)
                      ||||+++|+|.+++.  ....+++..+..++.+++.||+|||+.+  |+||||||+|||+++++.+||+|||+++.... 
T Consensus        79 v~Ey~~~g~L~~~i~--~~~~l~~~~~~~i~~qi~~al~~lH~~~--ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~~  154 (323)
T cd05615          79 VMEYVNGGDLMYHIQ--QVGKFKEPQAVFYAAEISVGLFFLHRRG--IIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVD  154 (323)
T ss_pred             EEcCCCCCcHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCCHHHeEECCCCCEEEeccccccccCCC
Confidence            999999999999885  3356899999999999999999999998  99999999999999999999999999875321 


Q ss_pred             --------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 006019          530 --------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  601 (664)
Q Consensus       530 --------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  601 (664)
                              ....+.+||......++.++|||||||++|||+||+.||...  ...+..........           .++
T Consensus       155 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~--~~~~~~~~i~~~~~-----------~~p  221 (323)
T cd05615         155 GVTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGE--DEDELFQSIMEHNV-----------SYP  221 (323)
T ss_pred             CccccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCC--CHHHHHHHHHhCCC-----------CCC
Confidence                    123456788877777899999999999999999999999432  23333333332211           112


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCH
Q 006019          602 EEQLETLGELIKSCVRADPEKRPTM  626 (664)
Q Consensus       602 ~~~~~~l~~l~~~Cl~~~P~~RPs~  626 (664)
                      .....++.+++.+|++.+|++|++.
T Consensus       222 ~~~~~~~~~li~~~l~~~p~~R~~~  246 (323)
T cd05615         222 KSLSKEAVSICKGLMTKHPSKRLGC  246 (323)
T ss_pred             ccCCHHHHHHHHHHcccCHhhCCCC
Confidence            2233567899999999999999985

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.5e-34  Score=285.28  Aligned_cols=251  Identities=19%  Similarity=0.276  Sum_probs=184.3

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC---ceeEEE
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP---FTRMMV  451 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~---~~~~lV  451 (664)
                      +++|.|+||.||+|.+. ++..||||++.....         ---+|+++|++++|||||+|+-++.....   ....+|
T Consensus        30 ~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r---------~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlV  100 (364)
T KOG0658|consen   30 RLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKR---------YKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLV  100 (364)
T ss_pred             EEEeecccceEEEEEEcCCCceeEEEEecCCCC---------cCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHH
Confidence            78999999999999965 578999999864332         12368999999999999999988865432   245689


Q ss_pred             EEecCCCChhhhhccc--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCC-CceEecccCchhhhh
Q 006019          452 FEYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED-YAAKLSDLSFWNEIA  528 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~-~~~kl~DfGla~~~~  528 (664)
                      +||||. +|+++++..  ....++.....-+..|+.+||+|||+.+  |+||||||.|+|+|.+ +.+||+|||.|+.+.
T Consensus       101 leymP~-tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~~--IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~  177 (364)
T KOG0658|consen  101 LEYMPE-TLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSHG--ICHRDIKPQNLLVDPDTGVLKICDFGSAKVLV  177 (364)
T ss_pred             HHhchH-HHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhcC--cccCCCChheEEEcCCCCeEEeccCCcceeec
Confidence            999998 999888632  2345666666678999999999999988  9999999999999966 999999999999885


Q ss_pred             hhh--------hhccccccc-CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCC--ChHHHHHHHhcC---------CCC
Q 006019          529 MAE--------MAATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG--SLEDWAADYLSG---------VQP  588 (664)
Q Consensus       529 ~~~--------~~~~~pe~~-~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~--~~~~~~~~~~~~---------~~~  588 (664)
                      ..+        ..+.+||+. .+..++.+.||||.|||+.||+-|+.-|.++.+  .+++.++ .+--         ...
T Consensus       178 ~~epniSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~dQL~eIik-~lG~Pt~e~I~~mn~~  256 (364)
T KOG0658|consen  178 KGEPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSVDQLVEIIK-VLGTPTREDIKSMNPN  256 (364)
T ss_pred             cCCCceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHHHHHHHHHH-HhCCCCHHHHhhcCcc
Confidence            443        345567754 566799999999999999999999988864332  1222221 1100         000


Q ss_pred             CccccCCCCC-----C-CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH--HHHhhhCC
Q 006019          589 LQQFVDPTLS-----S-FDEEQLETLGELIKSCVRADPEKRPTMRDIAA--ILREITGI  639 (664)
Q Consensus       589 ~~~~~d~~~~-----~-~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~--~L~~i~~~  639 (664)
                      ..+...+.+.     . +......+..+++.++++.+|.+|.++.|++.  .++++.+.
T Consensus       257 y~~~~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l~h~fFdelr~~  315 (364)
T KOG0658|consen  257 YTEFKFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSPSKRLSALEALAHPFFDELRDP  315 (364)
T ss_pred             cccccCcccccccceeecccCCCHHHHHHHHHHhccChhhcCCHHHHhcchhhHHhhCc
Confidence            0011112221     1 22334567889999999999999999998874  45555543

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=100.00  E-value=4.5e-33  Score=282.15  Aligned_cols=239  Identities=22%  Similarity=0.338  Sum_probs=190.5

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||++.. .++..+++|.+......   ....+.+.+|++++++++|||++++++++...+  ..++|+
T Consensus         4 ~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--~~~lv~   78 (256)
T cd08220           4 KIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMT---KDERLAAQNECQVLKLLSHPNIIEYYENFLEDK--ALMIVM   78 (256)
T ss_pred             EEEEecccCceEEEEEEEcCCCcEEEEEEEeccccc---cHHHHHHHHHHHHHhhCCCCchhheeeeEecCC--EEEEEE
Confidence            447899999999999986 46888999998754322   234578999999999999999999999987766  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCC-CceEecccCchhhhhhh-
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED-YAAKLSDLSFWNEIAMA-  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~-~~~kl~DfGla~~~~~~-  530 (664)
                      ||+++++|.++++......+++..+.+++.+++.|++|||+++  ++||||||+||+++++ +.+|++|||+++..... 
T Consensus        79 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~--i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~  156 (256)
T cd08220          79 EYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKL--ILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKS  156 (256)
T ss_pred             ecCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEcCCCCEEEEccCCCceecCCCc
Confidence            9999999999997655566899999999999999999999998  9999999999999855 56899999998765322 


Q ss_pred             -------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          531 -------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       531 -------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                             ...+.+||.......+.++||||||+++|||++|+.||..  .+.............  .        ..+..
T Consensus       157 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~--~~~~~~~~~~~~~~~--~--------~~~~~  224 (256)
T cd08220         157 KAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEA--ANLPALVLKIMSGTF--A--------PISDR  224 (256)
T ss_pred             cccccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCccc--CchHHHHHHHHhcCC--C--------CCCCC
Confidence                   2235568877777788999999999999999999999843  233333333222110  1        11122


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ....+.+++.+||+.+|++||++.|+++
T Consensus       225 ~~~~l~~li~~~l~~~p~~Rpt~~~ll~  252 (256)
T cd08220         225 YSPDLRQLILSMLNLDPSKRPQLSQIMA  252 (256)
T ss_pred             cCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence            3456889999999999999999999876

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=100.00  E-value=2e-33  Score=289.81  Aligned_cols=249  Identities=18%  Similarity=0.222  Sum_probs=185.0

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. ++..+|+|++......   ....+.+.+|++++++++|+|++++++++....  ..++||
T Consensus         5 ~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~---~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~--~~~~v~   79 (286)
T cd07847           5 KLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDD---PVIKKIALREIRMLKQLKHPNLVNLIEVFRRKR--KLHLVF   79 (286)
T ss_pred             eeeeecccCCeEEEEEEECCCCcEEEEEEEeecccC---ccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCC--EEEEEE
Confidence            3467999999999999976 5889999988654322   123456889999999999999999999998776  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhhh-
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  531 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~~-  531 (664)
                      ||++++.|..+..  ....+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||++....... 
T Consensus        80 e~~~~~~l~~~~~--~~~~~~~~~~~~~~~ql~~~l~~LH~~~--i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~  155 (286)
T cd07847          80 EYCDHTVLNELEK--NPRGVPEHLIKKIIWQTLQAVNFCHKHN--CIHRDVKPENILITKQGQIKLCDFGFARILTGPGD  155 (286)
T ss_pred             eccCccHHHHHHh--CCCCCCHHHHHHHHHHHHHHHHHHHHCC--ceecCCChhhEEEcCCCcEEECccccceecCCCcc
Confidence            9999988887764  3346899999999999999999999988  9999999999999999999999999987653321 


Q ss_pred             --------hhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHH-HHHHHhcCC-----------CCCc
Q 006019          532 --------MAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLED-WAADYLSGV-----------QPLQ  590 (664)
Q Consensus       532 --------~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~-~~~~~~~~~-----------~~~~  590 (664)
                              ..+.+||...+ ..++.++|||||||++|||+||+.||......... .........           ....
T Consensus       156 ~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (286)
T cd07847         156 DYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVDQLYLIRKTLGDLIPRHQQIFSTNQFFK  235 (286)
T ss_pred             cccCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcccccccc
Confidence                    23456776543 45788999999999999999999999532211110 011111000           0000


Q ss_pred             cccCCCCCC------CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          591 QFVDPTLSS------FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       591 ~~~d~~~~~------~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ....+....      ..+.....+.+++.+||+.+|++||++.|++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~  282 (286)
T cd07847         236 GLSIPEPETREPLESKFPNISSPALSFLKGCLQMDPTERLSCEELLE  282 (286)
T ss_pred             cccCCCcccccCHHHHhccCCHHHHHHHHHHhcCCccccCCHHHHhc
Confidence            000000000      00122456889999999999999999998875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=2.2e-33  Score=300.04  Aligned_cols=241  Identities=20%  Similarity=0.235  Sum_probs=183.6

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+++.. +++.+|+|.+.......  ....+.+.+|+++++.++||||+++++++...+  ..++||
T Consensus        47 ~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~--~~~lv~  122 (370)
T cd05621          47 VVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIK--RSDSAFFWEERDIMAFANSPWVVQLFCAFQDDK--YLYMVM  122 (370)
T ss_pred             EEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhh--hhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC--EEEEEE
Confidence            4478999999999999975 57889999986432211  223456889999999999999999999998776  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++|+|.+++..   ..++......++.+++.||+|||+.+  |+||||||+|||+++++.+||+|||+++....   
T Consensus       123 Ey~~gg~L~~~l~~---~~~~~~~~~~~~~qil~aL~~LH~~~--IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~~~~~  197 (370)
T cd05621         123 EYMPGGDLVNLMSN---YDVPEKWAKFYTAEVVLALDAIHSMG--LIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGM  197 (370)
T ss_pred             cCCCCCcHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHCC--eEecCCCHHHEEECCCCCEEEEecccceecccCCc
Confidence            99999999999853   34788889999999999999999998  99999999999999999999999999876532   


Q ss_pred             -------hhhhcccccccCC----CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 006019          530 -------AEMAATSKKLSSA----PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       530 -------~~~~~~~pe~~~~----~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                             ....+.+||....    ..++.++|||||||++|||+||+.||...  +..+.............   -+.  
T Consensus       198 ~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~--~~~~~~~~i~~~~~~~~---~p~--  270 (370)
T cd05621         198 VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYAD--SLVGTYSKIMDHKNSLN---FPE--  270 (370)
T ss_pred             eecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCC--CHHHHHHHHHhCCcccC---CCC--
Confidence                   1233456776543    23678999999999999999999999532  23333333332211111   011  


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCC--CCCHHHHHHH
Q 006019          599 SFDEEQLETLGELIKSCVRADPEK--RPTMRDIAAI  632 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~--RPs~~ev~~~  632 (664)
                        .......+.+++.+|++.++.+  |+++.|+++.
T Consensus       271 --~~~~s~~~~~li~~~L~~~~~r~~R~~~~e~l~h  304 (370)
T cd05621         271 --DVEISKHAKNLICAFLTDREVRLGRNGVEEIKQH  304 (370)
T ss_pred             --cccCCHHHHHHHHHHccCchhccCCCCHHHHhcC
Confidence              1122345778999999865543  8899988775

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-33  Score=282.12  Aligned_cols=249  Identities=22%  Similarity=0.381  Sum_probs=186.7

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhc--cCCCcccceEEEEecCCC--ceeE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSK--VNHKNFVNLIGFCEEEEP--FTRM  449 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~--l~H~niv~l~g~~~~~~~--~~~~  449 (664)
                      +.+.||+|.||.||+|+|+ |..||||++....        ++.+.+|.++.+.  +||+||..+++.-..++.  .+.+
T Consensus       215 L~e~IGkGRyGEVwrG~wr-Ge~VAVKiF~srd--------E~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLw  285 (513)
T KOG2052|consen  215 LQEIIGKGRFGEVWRGRWR-GEDVAVKIFSSRD--------ERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLW  285 (513)
T ss_pred             EEEEecCccccceeecccc-CCceEEEEecccc--------hhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEE
Confidence            4588999999999999995 6789999996432        4667888888876  499999999988654332  2579


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCeEEeCcCCCCeEecCCCceEecccCc
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMH------QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF  523 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH------~~~~~ivHrDLk~~NILld~~~~~kl~DfGl  523 (664)
                      ||++|.++|||+|+|.   ...++-...++++..+|.||++||      +-+|.|.|||||+.|||+..++.+.|+|+|+
T Consensus       286 LvTdYHe~GSL~DyL~---r~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGL  362 (513)
T KOG2052|consen  286 LVTDYHEHGSLYDYLN---RNTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL  362 (513)
T ss_pred             EeeecccCCcHHHHHh---hccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeecee
Confidence            9999999999999995   367999999999999999999999      2458899999999999999999999999999


Q ss_pred             hhhhhhh-------------hhhcccccccCCCC------CCcCCcchhhHHHHHHHHhC----------CCCccC---C
Q 006019          524 WNEIAMA-------------EMAATSKKLSSAPS------ASLESNVYNFGVLLFEMVTG----------RLPYLV---D  571 (664)
Q Consensus       524 a~~~~~~-------------~~~~~~pe~~~~~~------~s~ksDVySfGvvl~El~tG----------~~P~~~---~  571 (664)
                      |......             +..|.+||.....-      --..+||||||.|+||+.-+          +.||.+   .
T Consensus       363 Av~h~~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~  442 (513)
T KOG2052|consen  363 AVRHDSDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPS  442 (513)
T ss_pred             eEEecccCCcccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCC
Confidence            8755322             23344555432211      12348999999999998753          356642   1


Q ss_pred             CCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          572 NGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      +.+.+ ..++.+.. +.....++...  ...+++..+.++|+.||..+|..|-|+-.|.+.|.++.+
T Consensus       443 DPs~e-eMrkVVCv-~~~RP~ipnrW--~s~~~l~~m~klMkeCW~~Np~aRltALriKKtl~~l~~  505 (513)
T KOG2052|consen  443 DPSFE-EMRKVVCV-QKLRPNIPNRW--KSDPALRVMAKLMKECWYANPAARLTALRIKKTLAKLSN  505 (513)
T ss_pred             CCCHH-HHhcceee-cccCCCCCccc--ccCHHHHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhc
Confidence            12222 22222211 22222222222  235677889999999999999999999999999999875

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=1.6e-33  Score=294.31  Aligned_cols=245  Identities=16%  Similarity=0.215  Sum_probs=183.1

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||+|+.. ++..+|+|.+.......    ....+.+|++++++++||||+++++++...+  ..++|||
T Consensus        11 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~----~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~e   84 (309)
T cd07872          11 LEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEG----APCTAIREVSLLKDLKHANIVTLHDIVHTDK--SLTLVFE   84 (309)
T ss_pred             EEEecccCCEEEEEEEecCCCCeEEEEEeeccccCC----cchhHHHHHHHHHhCCCCCcceEEEEEeeCC--eEEEEEe
Confidence            478999999999999965 57889999987543222    2346788999999999999999999998776  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++ +|.+++.. ....+++.....++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||+++....    
T Consensus        85 ~~~~-~l~~~~~~-~~~~~~~~~~~~~~~qi~~aL~~lH~~~--ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~  160 (309)
T cd07872          85 YLDK-DLKQYMDD-CGNIMSMHNVKIFLYQILRGLAYCHRRK--VLHRDLKPQNLLINERGELKLADFGLARAKSVPTKT  160 (309)
T ss_pred             CCCC-CHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEECCCCCEEECccccceecCCCccc
Confidence            9975 88887753 3345889999999999999999999998  99999999999999999999999999875421    


Q ss_pred             -----hhhhcccccccC-CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCC--------------CCC
Q 006019          530 -----AEMAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV--------------QPL  589 (664)
Q Consensus       530 -----~~~~~~~pe~~~-~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~--------------~~~  589 (664)
                           ....+.+||... ...++.++|||||||++|||+||+.||....  ..+.........              ...
T Consensus       161 ~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
T cd07872         161 YSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGST--VEDELHLIFRLLGTPTEETWPGISSNDEF  238 (309)
T ss_pred             cccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHHHhCCCCHHHHhhhcchhhh
Confidence                 122345677653 3457889999999999999999999995322  111111111000              000


Q ss_pred             ccccCCCCC-----CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          590 QQFVDPTLS-----SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       590 ~~~~d~~~~-----~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .....+...     ........++.+++.+|++.||++|||+.|+++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~  285 (309)
T cd07872         239 KNYNFPKYKPQPLINHAPRLDTEGIELLTKFLQYESKKRISAEEAMK  285 (309)
T ss_pred             hhhhcCccCCCchhhhccCCCHHHHHHHHHhccCChhhCCCHHHHhc
Confidence            000000000     011123456789999999999999999999987

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2e-33  Score=288.10  Aligned_cols=236  Identities=16%  Similarity=0.269  Sum_probs=188.4

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||.|+||.||+|+.. ++..+++|.+.....    ......+.+|++++++++|+||+++++++.+..  ..++|+
T Consensus         5 ~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~~v~   78 (274)
T cd06609           5 LLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEA----EDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGS--KLWIIM   78 (274)
T ss_pred             hhhhhcCCCCeEEEEEEECCCCeEEEEEEeecccc----chHHHHHHHHHHHHHHcCCCCeeeeeEEEEECC--eEEEEE
Confidence            4477999999999999965 588999998865431    123467889999999999999999999998776  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++++|.++++..   .+++.....++.+++.|+.|||+.+  ++||||+|+||++++++.++|+|||+++.....  
T Consensus        79 e~~~~~~L~~~~~~~---~~~~~~~~~~~~ql~~~l~~lh~~~--i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~  153 (274)
T cd06609          79 EYCGGGSCLDLLKPG---KLDETYIAFILREVLLGLEYLHEEG--KIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMS  153 (274)
T ss_pred             EeeCCCcHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHHEEECCCCCEEEcccccceeeccccc
Confidence            999999999998632   7899999999999999999999988  999999999999999999999999998766432  


Q ss_pred             -------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          531 -------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       531 -------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                             ...+.+||+.....++.++|||||||++|||+||+.||....  ..+........       ..+....  ..
T Consensus       154 ~~~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~--~~~~~~~~~~~-------~~~~~~~--~~  222 (274)
T cd06609         154 KRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLH--PMRVLFLIPKN-------NPPSLEG--NK  222 (274)
T ss_pred             ccccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCc--hHHHHHHhhhc-------CCCCCcc--cc
Confidence                   123456887777778999999999999999999999994322  22222111111       0111110  00


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .+..+.+++.+||..+|++||+++++++
T Consensus       223 ~~~~~~~~l~~~l~~~p~~Rpt~~~il~  250 (274)
T cd06609         223 FSKPFKDFVSLCLNKDPKERPSAKELLK  250 (274)
T ss_pred             cCHHHHHHHHHHhhCChhhCcCHHHHhh
Confidence            3456889999999999999999999976

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=100.00  E-value=3.9e-33  Score=289.60  Aligned_cols=252  Identities=18%  Similarity=0.228  Sum_probs=188.8

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|... ++..|++|.+...............+..|++++++++|+||+++++++.+.+  ..++||
T Consensus         4 ~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~--~~~lv~   81 (298)
T cd07841           4 KGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKS--NINLVF   81 (298)
T ss_pred             eeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCC--EEEEEE
Confidence            3467999999999999965 6889999999765543222334567889999999999999999999998866  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+ +|+|.++++... ..+++..+.+++.++++||+|||+.+  ++||||||+||+++.++.+||+|||+++.....  
T Consensus        82 e~~-~~~L~~~i~~~~-~~~~~~~~~~~~~qi~~al~~lH~~~--i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~  157 (298)
T cd07841          82 EFM-ETDLEKVIKDKS-IVLTPADIKSYMLMTLRGLEYLHSNW--ILHRDLKPNNLLIASDGVLKLADFGLARSFGSPNR  157 (298)
T ss_pred             ccc-CCCHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHhCC--eeecCCChhhEEEcCCCCEEEccceeeeeccCCCc
Confidence            999 999999986433 47999999999999999999999998  999999999999999999999999998765322  


Q ss_pred             -------hhhcccccccC-CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHH--hcC--------CCCCccc
Q 006019          531 -------EMAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY--LSG--------VQPLQQF  592 (664)
Q Consensus       531 -------~~~~~~pe~~~-~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~--~~~--------~~~~~~~  592 (664)
                             ...+.+||... ...++.++|||||||++|||++|..||.... .........  ...        .......
T Consensus       158 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (298)
T cd07841         158 KMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDS-DIDQLGKIFEALGTPTEENWPGVTSLPDY  236 (298)
T ss_pred             cccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCc-cHHHHHHHHHHcCCCchhhhhhccccccc
Confidence                   12245677553 3456889999999999999999977774322 222111110  000        0000000


Q ss_pred             cC------CCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          593 VD------PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       593 ~d------~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      ..      .............+.+++.+||+.+|++||+++|+++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~~  282 (298)
T cd07841         237 VEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALEH  282 (298)
T ss_pred             ccccccCCcchhhhcccccHHHHHHHHHHhcCCcccCcCHHHHhhC
Confidence            00      00001112334678899999999999999999999983

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=4.8e-33  Score=297.74  Aligned_cols=241  Identities=19%  Similarity=0.237  Sum_probs=183.2

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+++.. +++.+|+|.+.......  ....+.+.+|+.+++.++||||+++++++...+  ..++||
T Consensus        47 i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~--~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~--~~~lv~  122 (371)
T cd05622          47 VVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIK--RSDSAFFWEERDIMAFANSPWVVQLFYAFQDDR--YLYMVM  122 (371)
T ss_pred             EEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhh--hHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCC--EEEEEE
Confidence            4488999999999999975 57889999886432211  223456889999999999999999999998776  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++|+|.+++..   ..++...+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....   
T Consensus       123 Ey~~gg~L~~~~~~---~~~~~~~~~~~~~qi~~aL~~LH~~~--ivHrDLkp~NIll~~~~~ikL~DfG~a~~~~~~~~  197 (371)
T cd05622         123 EYMPGGDLVNLMSN---YDVPEKWARFYTAEVVLALDAIHSMG--FIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGM  197 (371)
T ss_pred             cCCCCCcHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHCC--EEeCCCCHHHEEECCCCCEEEEeCCceeEcCcCCc
Confidence            99999999998853   34788888899999999999999999  99999999999999999999999999875532   


Q ss_pred             -------hhhhcccccccCC----CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 006019          530 -------AEMAATSKKLSSA----PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       530 -------~~~~~~~pe~~~~----~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                             ....+.+||....    ..++.++|||||||++|||++|+.||..  .+.......+........ +  +.  
T Consensus       198 ~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~--~~~~~~~~~i~~~~~~~~-~--~~--  270 (371)
T cd05622         198 VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYA--DSLVGTYSKIMNHKNSLT-F--PD--  270 (371)
T ss_pred             ccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCC--CCHHHHHHHHHcCCCccc-C--CC--
Confidence                   1233556776543    2378899999999999999999999953  233333333332211111 1  11  


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCC--CCCHHHHHHH
Q 006019          599 SFDEEQLETLGELIKSCVRADPEK--RPTMRDIAAI  632 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~--RPs~~ev~~~  632 (664)
                        .......+.+++.+|++.++.+  ||++.++.+.
T Consensus       271 --~~~~s~~~~~li~~~L~~~~~r~~r~~~~ei~~h  304 (371)
T cd05622         271 --DNDISKEAKNLICAFLTDREVRLGRNGVEEIKRH  304 (371)
T ss_pred             --cCCCCHHHHHHHHHHcCChhhhcCCCCHHHHhcC
Confidence              1123356889999999844433  6788888774

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=100.00  E-value=4.7e-33  Score=285.45  Aligned_cols=241  Identities=24%  Similarity=0.437  Sum_probs=187.9

Q ss_pred             cccccCCCeEEEEEEEC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeE
Q 006019          376 NVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  449 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~  449 (664)
                      ..||+|+||.||+|+..      +...+++|.+.....    ....++|.+|++++++++|+||+++++++.+.+  ..+
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~----~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~   84 (275)
T cd05046          11 TTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKD----ENLQSEFRRELDMFRKLSHKNVVRLLGLCREAE--PHY   84 (275)
T ss_pred             eeecccceeEEEEEEeccCCcCCCcceEEEEccCCccc----hHHHHHHHHHHHHHHhcCCcceeeeEEEECCCC--cce
Confidence            67999999999999964      245688887753221    224567999999999999999999999998766  569


Q ss_pred             EEEEecCCCChhhhhcccCC-------CCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccC
Q 006019          450 MVFEYAPNGTLFEHIHIKES-------EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLS  522 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~-------~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfG  522 (664)
                      +||||+++|+|.++++....       ..+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+|++|||
T Consensus        85 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~--i~H~dlkp~Nili~~~~~~~l~~~~  162 (275)
T cd05046          85 MILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNAR--FVHRDLAARNCLVSSQREVKVSLLS  162 (275)
T ss_pred             EEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhcC--cccCcCccceEEEeCCCcEEEcccc
Confidence            99999999999999864331       26899999999999999999999998  9999999999999999999999999


Q ss_pred             chhhhhhh----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCcc
Q 006019          523 FWNEIAMA----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQ  591 (664)
Q Consensus       523 la~~~~~~----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~  591 (664)
                      +++.....          ...+.+||.......+.++|||||||++|||++ |..||..  ....+.........  ...
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~--~~~~~~~~~~~~~~--~~~  238 (275)
T cd05046         163 LSKDVYNSEYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYG--LSDEEVLNRLQAGK--LEL  238 (275)
T ss_pred             cccccCcccccccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccc--cchHHHHHHHHcCC--cCC
Confidence            97643211          123566787766778899999999999999999 8888832  12222222222111  000


Q ss_pred             ccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHh
Q 006019          592 FVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  635 (664)
Q Consensus       592 ~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~  635 (664)
                             ..+...+..+.+++.+||+.+|++||++.|+++.|.+
T Consensus       239 -------~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~~l~~l~~  275 (275)
T cd05046         239 -------PVPEGCPSRLYKLMTRCWAVNPKDRPSFSELVSALGE  275 (275)
T ss_pred             -------CCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhcC
Confidence                   0112233578999999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=100.00  E-value=7.8e-33  Score=287.19  Aligned_cols=236  Identities=19%  Similarity=0.299  Sum_probs=187.4

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||.|+||.||+|.. .+++.+++|.+.....     ...+.+.+|+++++.++|+||+++++++...+  ..++|+
T Consensus        23 ~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~-----~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~   95 (296)
T cd06655          23 RYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQ-----PKKELIINEILVMKELKNPNIVNFLDSFLVGD--ELFVVM   95 (296)
T ss_pred             EEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccC-----chHHHHHHHHHHHHhcCCCceeeeeeeEecCc--eEEEEE
Confidence            347899999999999985 5688999998864332     22467889999999999999999999998776  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++|+|.+++..   ..+++.++..++.+++.|++|||+.+  ++||||||+||+++.++.+||+|||+++.....  
T Consensus        96 e~~~~~~L~~~~~~---~~l~~~~~~~i~~~l~~al~~LH~~~--i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~  170 (296)
T cd06655          96 EYLAGGSLTDVVTE---TCMDEAQIAAVCRECLQALEFLHANQ--VIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQS  170 (296)
T ss_pred             EecCCCcHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEECCCCCEEEccCccchhcccccc
Confidence            99999999998853   35899999999999999999999998  999999999999999999999999998754321  


Q ss_pred             -------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          531 -------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       531 -------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                             ...+.+||......++.++|||||||++|||+||+.||....  ..+..........  ...      ..+..
T Consensus       171 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~--~~~~~~~~~~~~~--~~~------~~~~~  240 (296)
T cd06655         171 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNEN--PLRALYLIATNGT--PEL------QNPEK  240 (296)
T ss_pred             cCCCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHhcCC--ccc------CCccc
Confidence                   123456887777778899999999999999999999994322  2222221111110  000      11222


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ....+.+++.+||+.||++||++.++++
T Consensus       241 ~~~~~~~li~~~l~~dp~~Rpt~~~il~  268 (296)
T cd06655         241 LSPIFRDFLNRCLEMDVEKRGSAKELLQ  268 (296)
T ss_pred             CCHHHHHHHHHHhhcChhhCCCHHHHhh
Confidence            3356889999999999999999998875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=2e-33  Score=306.97  Aligned_cols=251  Identities=16%  Similarity=0.246  Sum_probs=181.4

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecC------CCc
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEE------EPF  446 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------~~~  446 (664)
                      +.+.||+|+||.||+|... ++..||||++....         ....+|+.+|++++|||||++++++...      ...
T Consensus        70 ~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~---------~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~  140 (440)
T PTZ00036         70 LGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP---------QYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNI  140 (440)
T ss_pred             EeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc---------chHHHHHHHHHhcCCCCCcceeeeEeecccccCCCce
Confidence            4578999999999999964 68899999885321         2345799999999999999999886432      112


Q ss_pred             eeEEEEEecCCCChhhhhcc--cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC-ceEecccCc
Q 006019          447 TRMMVFEYAPNGTLFEHIHI--KESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY-AAKLSDLSF  523 (664)
Q Consensus       447 ~~~lV~Ey~~~GsL~~~l~~--~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~-~~kl~DfGl  523 (664)
                      ..++||||+++ +|.+++..  .....+++.....++.+++.||+|||+.+  |+||||||+|||++.++ .+||+|||+
T Consensus       141 ~l~lvmE~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~~--IiHrDLKp~NILl~~~~~~vkL~DFGl  217 (440)
T PTZ00036        141 FLNVVMEFIPQ-TVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSKF--ICHRDLKPQNLLIDPNTHTLKLCDFGS  217 (440)
T ss_pred             EEEEEEecCCc-cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCC--EecCCcCHHHEEEcCCCCceeeecccc
Confidence            35789999985 77776642  24467899999999999999999999998  99999999999999665 799999999


Q ss_pred             hhhhhhh--------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCC-C-----
Q 006019          524 WNEIAMA--------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-P-----  588 (664)
Q Consensus       524 a~~~~~~--------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~-~-----  588 (664)
                      ++.....        ...+.+||...+ ..++.++|||||||++|||+||+.||....  ..+.......... .     
T Consensus       218 a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~--~~~~~~~i~~~~~~p~~~~~  295 (440)
T PTZ00036        218 AKNLLAGQRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQS--SVDQLVRIIQVLGTPTEDQL  295 (440)
T ss_pred             chhccCCCCcccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHHHhCCCCHHHH
Confidence            9865321        233567886543 468899999999999999999999995322  1111111111000 0     


Q ss_pred             ------CccccCCCCC------CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH--HHHhhhC
Q 006019          589 ------LQQFVDPTLS------SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA--ILREITG  638 (664)
Q Consensus       589 ------~~~~~d~~~~------~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~--~L~~i~~  638 (664)
                            ...+.-+...      .++...+.++.+++.+||+.||.+||++.|+++  .++++..
T Consensus       296 ~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~hp~f~~~~~  359 (440)
T PTZ00036        296 KEMNPNYADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALADPFFDDLRD  359 (440)
T ss_pred             HHhchhhhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCcCHHHHhCChhHHhhhc
Confidence                  0000001100      112233467899999999999999999999884  4555443

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=100.00  E-value=7.9e-33  Score=280.42  Aligned_cols=240  Identities=28%  Similarity=0.443  Sum_probs=190.6

Q ss_pred             hhcccccCCCeEEEEEEECC-----CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          374 FSNVIGSSPIGTVYKGTLSN-----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~-----~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      +.+.||.|+||.||+++..+     +..+|+|.+.....    ....+.+.+|++++++++|+||+++++++.+.+  ..
T Consensus         3 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~   76 (258)
T smart00219        3 LGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDAD----EQQIEEFLREARIMRKLDHPNIVKLLGVCTEEE--PL   76 (258)
T ss_pred             ccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCC----hHHHHHHHHHHHHHHhcCCCchheEEEEEcCCC--ee
Confidence            45789999999999999754     37899998854332    124578999999999999999999999998876  67


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      +++|||+++++|.+++.......+++.++..++.+++.|++|||+.+  ++||||||+||++++++.++|+|||+++...
T Consensus        77 ~~i~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~--~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~  154 (258)
T smart00219       77 MIVMEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKN--FIHRDLAARNCLVGENLVVKISDFGLSRDLY  154 (258)
T ss_pred             EEEEeccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcCC--eeecccccceEEEccCCeEEEcccCCceecc
Confidence            99999999999999987543333899999999999999999999998  9999999999999999999999999987654


Q ss_pred             hh----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 006019          529 MA----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  597 (664)
Q Consensus       529 ~~----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  597 (664)
                      ..          ...+.+||......++.++||||+|++++||++ |+.||..  ....+......... .         
T Consensus       155 ~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~--~~~~~~~~~~~~~~-~---------  222 (258)
T smart00219      155 DDDYYKKKGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPG--MSNEEVLEYLKKGY-R---------  222 (258)
T ss_pred             cccccccccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHhcCC-C---------
Confidence            22          123445776666778999999999999999999 8888843  23333333322221 0         


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 006019          598 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL  633 (664)
Q Consensus       598 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L  633 (664)
                      ...+...+.++.+++.+||..+|++||++.++++.|
T Consensus       223 ~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~l  258 (258)
T smart00219      223 LPKPENCPPEIYKLMLQCWAEDPEDRPTFSELVEIL  258 (258)
T ss_pred             CCCCCcCCHHHHHHHHHHCcCChhhCcCHHHHHhhC
Confidence            011122345788999999999999999999998764

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=100.00  E-value=3.4e-33  Score=287.89  Aligned_cols=247  Identities=18%  Similarity=0.264  Sum_probs=185.0

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||+|+.. ++..++||++......   ......+.+|++++++++||||+++++++.+.+  ..++|||
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~~v~e   79 (284)
T cd07860           5 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTET---EGVPSTAIREISLLKELNHPNIVKLLDVIHTEN--KLYLVFE   79 (284)
T ss_pred             eeeecCCCceEEEEEEECCCCCEEEEEEccccccc---cccchHHHHHHHHHHhcCCCCCcchhhhcccCC--cEEEEee
Confidence            467999999999999965 6889999988644322   123357889999999999999999999998776  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      |+. ++|.++++......+++.....++.+++.||+|||+.+  ++||||+|+||++++++.+||+|||+++.....   
T Consensus        80 ~~~-~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~--i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~~~  156 (284)
T cd07860          80 FLH-QDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHR--VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRT  156 (284)
T ss_pred             ccc-cCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEECCCCCEEEeeccchhhcccCccc
Confidence            996 68999887655677999999999999999999999988  999999999999999999999999998755321   


Q ss_pred             ------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCC---------------
Q 006019          531 ------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP---------------  588 (664)
Q Consensus       531 ------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~---------------  588 (664)
                            ...+.+||...+ ...+.++|||||||++|||+||+.||..+. . .+...........               
T Consensus       157 ~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (284)
T cd07860         157 YTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDS-E-IDQLFRIFRTLGTPDEVVWPGVTSLPDY  234 (284)
T ss_pred             cccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC-H-HHHHHHHHHHhCCCChhhhhhhhHHHHH
Confidence                  123456775543 335888999999999999999999985332 1 1111111110000               


Q ss_pred             ---CccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          589 ---LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       589 ---~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                         ..................++.+++.+||+.||++||+++++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~  280 (284)
T cd07860         235 KPSFPKWARQDFSKVVPPLDEDGRDLLSQMLHYDPNKRISAKAALA  280 (284)
T ss_pred             HhhcccccccCHHHHcccCCHHHHHHHHHhcCCCcccCCCHHHHhc
Confidence               0000000000001122346789999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=1.1e-32  Score=282.34  Aligned_cols=244  Identities=20%  Similarity=0.325  Sum_probs=185.5

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCC-----chhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDW-----PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~-----~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      .+.||+|+||.||+|... ++..+|+|.+........     .....+.+.+|++++++++|+|++++++++...+  ..
T Consensus         6 ~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~   83 (272)
T cd06629           6 GELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEE--YL   83 (272)
T ss_pred             cceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCC--ce
Confidence            368999999999999854 688999998864322110     1123457889999999999999999999998776  67


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++|+||+++|+|.++++..  ..+++..+..++.+++.|+.|||+.+  ++||||+|+||++++++.+|++|||+++...
T Consensus        84 ~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~~~nil~~~~~~~~l~d~~~~~~~~  159 (272)
T cd06629          84 SIFLEYVPGGSIGSCLRTY--GRFEEQLVRFFTEQVLEGLAYLHSKG--ILHRDLKADNLLVDADGICKISDFGISKKSD  159 (272)
T ss_pred             EEEEecCCCCcHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHhhCC--eeecCCChhhEEEcCCCeEEEeecccccccc
Confidence            9999999999999998643  56899999999999999999999988  9999999999999999999999999987543


Q ss_pred             hh-----------hhhcccccccCCC--CCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCC
Q 006019          529 MA-----------EMAATSKKLSSAP--SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  595 (664)
Q Consensus       529 ~~-----------~~~~~~pe~~~~~--~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~  595 (664)
                      ..           ...+.+||.....  .++.++||||||+++||+++|+.||.... ....+. .....  .....++.
T Consensus       160 ~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~-~~~~~~-~~~~~--~~~~~~~~  235 (272)
T cd06629         160 DIYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEE-AIAAMF-KLGNK--RSAPPIPP  235 (272)
T ss_pred             ccccccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCcc-hHHHHH-Hhhcc--ccCCcCCc
Confidence            11           1234467765443  37889999999999999999999984221 111111 11111  00111111


Q ss_pred             CCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          596 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       596 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .   .....+..+.+++.+||+.+|++||++.+|++
T Consensus       236 ~---~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  268 (272)
T cd06629         236 D---VSMNLSPVALDFLNACFTINPDNRPTARELLQ  268 (272)
T ss_pred             c---ccccCCHHHHHHHHHHhcCChhhCCCHHHHhh
Confidence            1   11223467889999999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=7.1e-33  Score=285.87  Aligned_cols=242  Identities=20%  Similarity=0.289  Sum_probs=187.0

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||++... ++..+|+|.+....    .......+.+|++++++++|+||+++++++...+  ..++|+
T Consensus         5 ~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~----~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--~~~lv~   78 (286)
T cd06622           5 VLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLEL----DESKFNQIIMELDILHKAVSPYIVDFYGAFFIEG--AVYMCM   78 (286)
T ss_pred             hhhhhcccCCeEEEEEEEcCCCcEEEEEEeeccc----CHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCC--eEEEEE
Confidence            4578999999999999975 68899999886432    1223467999999999999999999999998776  679999


Q ss_pred             EecCCCChhhhhcccC-CCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh
Q 006019          453 EYAPNGTLFEHIHIKE-SEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~-~~~l~~~~~~~ia~~ia~gL~yLH~-~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~  530 (664)
                      ||+++++|..+++... ...+++..+.+++.+++.|+.|||+ ++  ++||||||+||+++.++.+||+|||++......
T Consensus        79 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~--i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~  156 (286)
T cd06622          79 EYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHN--IIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVAS  156 (286)
T ss_pred             eecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcCC--EeeCCCCHHHEEECCCCCEEEeecCCcccccCC
Confidence            9999999998886431 3468999999999999999999996 57  999999999999999999999999998755221


Q ss_pred             -------hhhcccccccCCC------CCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 006019          531 -------EMAATSKKLSSAP------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  597 (664)
Q Consensus       531 -------~~~~~~pe~~~~~------~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  597 (664)
                             ...+.+||.....      .++.++|||||||++|||+||+.||.....  ..+......       +.+...
T Consensus       157 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~--~~~~~~~~~-------~~~~~~  227 (286)
T cd06622         157 LAKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETY--ANIFAQLSA-------IVDGDP  227 (286)
T ss_pred             ccccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCcch--hhHHHHHHH-------HhhcCC
Confidence                   1234567765332      347899999999999999999999953221  111111100       111111


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          598 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       598 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      ...+......+.+++.+||+.+|++||++.++++.
T Consensus       228 ~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~  262 (286)
T cd06622         228 PTLPSGYSDDAQDFVAKCLNKIPNRRPTYAQLLEH  262 (286)
T ss_pred             CCCCcccCHHHHHHHHHHcccCcccCCCHHHHhcC
Confidence            12233355678899999999999999999998873

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=100.00  E-value=9e-33  Score=281.24  Aligned_cols=237  Identities=20%  Similarity=0.272  Sum_probs=188.8

Q ss_pred             cccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEecC
Q 006019          378 IGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAP  456 (664)
Q Consensus       378 iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey~~  456 (664)
                      ||.|+||.||+++.. ++..+++|.+.......  ....+.+.+|++++++++||||+++++++.+..  ..++|+||++
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~e~~~   76 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVE--TGQQEHIFSEKEILEECNHPFIVKLYRTFKDKK--YIYMLMEYCL   76 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchh--hhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCC--ccEEEEecCC
Confidence            699999999999975 48899999986543222  234577999999999999999999999998776  6799999999


Q ss_pred             CCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh------
Q 006019          457 NGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA------  530 (664)
Q Consensus       457 ~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~------  530 (664)
                      +|+|.+++..  ...+++..+..++.+++.||+|||+.+  ++|+||+|+||+++.++.+||+|||+++.....      
T Consensus        77 ~~~L~~~l~~--~~~l~~~~~~~~~~~i~~~l~~lH~~~--~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~~~~~~  152 (262)
T cd05572          77 GGELWTILRD--RGLFDEYTARFYIACVVLAFEYLHNRG--IIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQKTWTF  152 (262)
T ss_pred             CCcHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHhhCC--cccCCCCHHHEEEcCCCCEEEeeCCcccccCcccccccc
Confidence            9999999863  345889999999999999999999988  999999999999999999999999998866432      


Q ss_pred             --hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHH
Q 006019          531 --EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETL  608 (664)
Q Consensus       531 --~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l  608 (664)
                        ...+.+||......++.++|+||||+++|||++|+.||.....+..+...........         ..++.....++
T Consensus       153 ~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~  223 (262)
T cd05572         153 CGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDEDPMEIYNDILKGNGK---------LEFPNYIDKAA  223 (262)
T ss_pred             cCCcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCCCHHHHHHHHhccCCC---------CCCCcccCHHH
Confidence              2234567777667788999999999999999999999954433334444333321111         11222224678


Q ss_pred             HHHHHHhccCCCCCCCC-----HHHHHH
Q 006019          609 GELIKSCVRADPEKRPT-----MRDIAA  631 (664)
Q Consensus       609 ~~l~~~Cl~~~P~~RPs-----~~ev~~  631 (664)
                      .+++.+||+.+|++||+     ++|+++
T Consensus       224 ~~~i~~~l~~~p~~R~~~~~~~~~~l~~  251 (262)
T cd05572         224 KDLIKQLLRRNPEERLGNLKGGIKDIKK  251 (262)
T ss_pred             HHHHHHHccCChhhCcCCcccCHHHHhc
Confidence            99999999999999999     555554

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=100.00  E-value=4.2e-33  Score=282.50  Aligned_cols=239  Identities=19%  Similarity=0.336  Sum_probs=190.0

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|... +|..+|+|.+......   ....+.+.+|++++++++|+||+++++++....  ..++|+
T Consensus         4 ~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~--~~~lv~   78 (257)
T cd08225           4 IIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMP---VKEKEASKKEVILLAKMKHPNIVTFFASFQENG--RLFIVM   78 (257)
T ss_pred             EEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhcc---chhhHHHHHHHHHHHhCCCCChhhhhheeccCC--eEEEEE
Confidence            4578999999999999975 5788999988654321   123457889999999999999999999998776  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC-ceEecccCchhhhhhh-
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY-AAKLSDLSFWNEIAMA-  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~-~~kl~DfGla~~~~~~-  530 (664)
                      ||+++++|.+++.......+++..+.+++.+++.|++|||+.+  ++|+||||+||++++++ .+||+|||.+...... 
T Consensus        79 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~--i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~  156 (257)
T cd08225          79 EYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDRK--ILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSM  156 (257)
T ss_pred             ecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC--cccccCCHHHEEEcCCCCeEEecccccchhccCCc
Confidence            9999999999987555557899999999999999999999998  99999999999999885 5699999988765322 


Q ss_pred             --------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          531 --------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       531 --------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                              ...+.+||......++.++|||||||++||+++|+.||..  ....++........      ..+    ...
T Consensus       157 ~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~--~~~~~~~~~~~~~~------~~~----~~~  224 (257)
T cd08225         157 ELAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEG--NNLHQLVLKICQGY------FAP----ISP  224 (257)
T ss_pred             ccccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHhccc------CCC----CCC
Confidence                    1234567776666788999999999999999999999842  23344443333221      111    111


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          603 EQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .....+.+++.+||+.+|++||++.|+++
T Consensus       225 ~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~  253 (257)
T cd08225         225 NFSRDLRSLISQLFKVSPRDRPSITSILK  253 (257)
T ss_pred             CCCHHHHHHHHHHhccChhhCcCHHHHhh
Confidence            22346889999999999999999999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=100.00  E-value=1.9e-32  Score=283.66  Aligned_cols=238  Identities=20%  Similarity=0.251  Sum_probs=185.1

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||.|+||.||+|+.. ++..+++|.+....     ....+.+.+|++++++++|+||+++++++...+  ..++||
T Consensus        16 i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~-----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   88 (292)
T cd06644          16 IIGELGDGAFGKVYKAKNKETGALAAAKVIETKS-----EEELEDYMVEIEILATCNHPYIVKLLGAFYWDG--KLWIMI   88 (292)
T ss_pred             hhheecCCCCeEEEEEEECCCCceEEEEEeccCC-----HHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCC--eEEEEE
Confidence            4467999999999999975 47889999885432     234577999999999999999999999988766  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++++|..++... ...+++..+..++.+++.|++|||+.+  ++||||||+||+++.++.+||+|||++......  
T Consensus        89 e~~~~~~l~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lH~~~--i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~  165 (292)
T cd06644          89 EFCPGGAVDAIMLEL-DRGLTEPQIQVICRQMLEALQYLHSMK--IIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQ  165 (292)
T ss_pred             ecCCCCcHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHhcCC--eeecCCCcceEEEcCCCCEEEccCccceecccccc
Confidence            999999998877532 356899999999999999999999988  999999999999999999999999987653211  


Q ss_pred             -------hhhcccccccC-----CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 006019          531 -------EMAATSKKLSS-----APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       531 -------~~~~~~pe~~~-----~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                             ...+.+||+..     ...++.++|||||||++|||+||+.||....  ..+..........       +.. 
T Consensus       166 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~--~~~~~~~~~~~~~-------~~~-  235 (292)
T cd06644         166 RRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELN--PMRVLLKIAKSEP-------PTL-  235 (292)
T ss_pred             ccceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCcccc--HHHHHHHHhcCCC-------ccC-
Confidence                   22345677653     3346789999999999999999999984322  2222222221110       110 


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ..+.....++.+++.+||+.+|++||++.++++
T Consensus       236 ~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  268 (292)
T cd06644         236 SQPSKWSMEFRDFLKTALDKHPETRPSAAQLLE  268 (292)
T ss_pred             CCCcccCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence            112233356889999999999999999998875

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=100.00  E-value=7.8e-33  Score=295.30  Aligned_cols=248  Identities=19%  Similarity=0.293  Sum_probs=184.2

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC----cee
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----FTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~----~~~  448 (664)
                      ..+.||+|+||.||+++.. +|..+|+|++......   ......+.+|+.+++.++||||+++++++...+.    ...
T Consensus        25 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~  101 (359)
T cd07876          25 QLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQN---QTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEFQDV  101 (359)
T ss_pred             EEEEeecCCCEEEEEEEEcCCCceeEEEEecccccc---hhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCcccccee
Confidence            3478999999999999864 5889999998643221   2335678899999999999999999999865431    146


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++||||+++ +|.+.++    ..+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...
T Consensus       102 ~lv~e~~~~-~l~~~~~----~~~~~~~~~~~~~qi~~~L~~LH~~~--ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~~  174 (359)
T cd07876         102 YLVMELMDA-NLCQVIH----MELDHERMSYLLYQMLCGIKHLHSAG--IIHRDLKPSNIVVKSDCTLKILDFGLARTAC  174 (359)
T ss_pred             EEEEeCCCc-CHHHHHh----ccCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHHEEECCCCCEEEecCCCccccc
Confidence            899999975 6666654    24788889999999999999999998  9999999999999999999999999987542


Q ss_pred             h--------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHH--------------------
Q 006019          529 M--------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAA--------------------  580 (664)
Q Consensus       529 ~--------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~--------------------  580 (664)
                      .        ....+.+||......++.++|||||||++|||+||+.||...+ ....|..                    
T Consensus       175 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (359)
T cd07876         175 TNFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGTD-HIDQWNKVIEQLGTPSAEFMNRLQPTV  253 (359)
T ss_pred             cCccCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCCC-HHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            2        1234567888877888999999999999999999999995322 1111111                    


Q ss_pred             -HHhcCCCCCc-----c----ccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          581 -DYLSGVQPLQ-----Q----FVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       581 -~~~~~~~~~~-----~----~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                       .+........     +    +..+............+.+++.+||+.||++|||+.|+++.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h  315 (359)
T cd07876         254 RNYVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLSKMLVIDPDKRISVDEALRH  315 (359)
T ss_pred             HHHHhhCCCCCCcchhhhccccccccccccccccchhHHHHHHHHhccCcccCCCHHHHhcC
Confidence             0110000000     0    00000001111223568899999999999999999999874

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=100.00  E-value=4.2e-33  Score=289.41  Aligned_cols=236  Identities=19%  Similarity=0.299  Sum_probs=186.6

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|.. .++..||+|.+.....     ...+.+.+|+.+++.++|+||+++++++...+  ..++||
T Consensus        23 ~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~-----~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~--~~~lv~   95 (297)
T cd06656          23 RFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQ-----PKKELIINEILVMRENKNPNIVNYLDSYLVGD--ELWVVM   95 (297)
T ss_pred             eeeeeccCCCeEEEEEEECCCCCEEEEEEEecCcc-----chHHHHHHHHHHHHhCCCCCEeeEEEEEecCC--EEEEee
Confidence            347899999999999995 5789999998864332     22456889999999999999999999998776  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++++|.+++..   ..+++.++.+++.+++.||.|||+.+  ++||||||+||+++.++.+||+|||++......  
T Consensus        96 e~~~~~~L~~~~~~---~~~~~~~~~~~~~~l~~~L~~LH~~~--i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~  170 (297)
T cd06656          96 EYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALDFLHSNQ--VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS  170 (297)
T ss_pred             cccCCCCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEECCCCCEEECcCccceEccCCcc
Confidence            99999999998853   45789999999999999999999988  999999999999999999999999988654221  


Q ss_pred             -------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          531 -------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       531 -------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                             ...+.+||......++.++|||||||++||++||+.||.....  ..........  .     .+. ...+..
T Consensus       171 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~--~~~~~~~~~~--~-----~~~-~~~~~~  240 (297)
T cd06656         171 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENP--LRALYLIATN--G-----TPE-LQNPER  240 (297)
T ss_pred             CcCcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCc--chheeeeccC--C-----CCC-CCCccc
Confidence                   2234567777777788999999999999999999999943221  1100000000  0     000 111223


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ....+.+++.+||+.+|++||+++++++
T Consensus       241 ~~~~~~~li~~~l~~~p~~Rps~~~il~  268 (297)
T cd06656         241 LSAVFRDFLNRCLEMDVDRRGSAKELLQ  268 (297)
T ss_pred             cCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            3456889999999999999999999987

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=6.4e-33  Score=290.72  Aligned_cols=184  Identities=16%  Similarity=0.268  Sum_probs=149.5

Q ss_pred             cccccCCCeEEEEEEEC---CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          376 NVIGSSPIGTVYKGTLS---NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~---~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      ..||+|+||.||+|+..   +++.+|+|.+....       ....+.+|++++++++||||+++++++........++|+
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~-------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~   79 (317)
T cd07868           7 CKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTG-------ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLF   79 (317)
T ss_pred             cccccCCCeEEEEEEEccCCCCceEEEEEECCCC-------CcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEE
Confidence            67999999999999864   45789999875322       124578899999999999999999998654433678999


Q ss_pred             EecCCCChhhhhccc-------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEe----cCCCceEeccc
Q 006019          453 EYAPNGTLFEHIHIK-------ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL----TEDYAAKLSDL  521 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~-------~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILl----d~~~~~kl~Df  521 (664)
                      ||+.+ +|.+++...       ....+++.....++.|++.||+|||+.+  |+||||||+|||+    +.++.+||+||
T Consensus        80 e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~--ivHrDlkp~Nil~~~~~~~~~~~kl~Df  156 (317)
T cd07868          80 DYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANW--VLHRDLKPANILVMGEGPERGRVKIADM  156 (317)
T ss_pred             eccCC-CHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhCC--EEcCCCCHHHEEEecCCCCcCcEEEeec
Confidence            99964 887776421       1235888999999999999999999998  9999999999999    46679999999


Q ss_pred             Cchhhhhhh------------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCcc
Q 006019          522 SFWNEIAMA------------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYL  569 (664)
Q Consensus       522 Gla~~~~~~------------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~  569 (664)
                      |+++.....            ...+.+||...+ ..++.++||||+||++|||+||+.||.
T Consensus       157 G~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~  217 (317)
T cd07868         157 GFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFH  217 (317)
T ss_pred             CceeccCCCCccccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCcc
Confidence            998765321            223567886654 457889999999999999999999995

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=3.1e-33  Score=318.61  Aligned_cols=249  Identities=17%  Similarity=0.278  Sum_probs=188.7

Q ss_pred             hhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      .+.+.||+|+||.||+++.. .+..+|+|.+......   ......|..|+.++++++|||||++++++........+||
T Consensus        16 eIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~---e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~lyIV   92 (1021)
T PTZ00266         16 EVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLK---EREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQKLYIL   92 (1021)
T ss_pred             EEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccC---HHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCEEEEE
Confidence            34588999999999999965 5678889888654322   2345679999999999999999999998865543367999


Q ss_pred             EEecCCCChhhhhccc--CCCCCCHHHHHHHHHHHHHHHHHhhcCC-----CCeEEeCcCCCCeEecC------------
Q 006019          452 FEYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQLN-----PPIAHNYLNSSAVHLTE------------  512 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gL~yLH~~~-----~~ivHrDLk~~NILld~------------  512 (664)
                      |||+++|+|.+++...  ....+++...+.|+.||+.||+|||+.+     ..||||||||+||||+.            
T Consensus        93 MEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~  172 (1021)
T PTZ00266         93 MEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQA  172 (1021)
T ss_pred             EeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccccccccc
Confidence            9999999999998642  2356999999999999999999999843     34999999999999964            


Q ss_pred             -----CCceEecccCchhhhhh--------hhhhcccccccC--CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHH
Q 006019          513 -----DYAAKLSDLSFWNEIAM--------AEMAATSKKLSS--APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLED  577 (664)
Q Consensus       513 -----~~~~kl~DfGla~~~~~--------~~~~~~~pe~~~--~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~  577 (664)
                           ...+||+|||+++....        ....+.+||...  ...++.++|||||||+||||+||+.||... ....+
T Consensus       173 ~n~ng~~iVKLsDFGlAr~l~~~s~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~-~~~~q  251 (1021)
T PTZ00266        173 NNLNGRPIAKIGDFGLSKNIGIESMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKA-NNFSQ  251 (1021)
T ss_pred             cccCCCCceEEccCCccccccccccccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcC-CcHHH
Confidence                 34589999999876532        233456788653  345788999999999999999999999532 22333


Q ss_pred             HHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH--HHHhh
Q 006019          578 WAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA--ILREI  636 (664)
Q Consensus       578 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~--~L~~i  636 (664)
                      +....... ..      .....    ....+.+|+..||+.+|++||++.+++.  .+..+
T Consensus       252 li~~lk~~-p~------lpi~~----~S~eL~dLI~~~L~~dPeeRPSa~QlL~h~~ik~i  301 (1021)
T PTZ00266        252 LISELKRG-PD------LPIKG----KSKELNILIKNLLNLSAKERPSALQCLGYQIIKNV  301 (1021)
T ss_pred             HHHHHhcC-CC------CCcCC----CCHHHHHHHHHHhcCChhHCcCHHHHhccHHHhhc
Confidence            33222211 00      00111    2346889999999999999999999984  44433

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=100.00  E-value=1e-32  Score=280.60  Aligned_cols=242  Identities=21%  Similarity=0.300  Sum_probs=191.1

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||.|+||.||++... ++..+++|.+.....   .....+.+..|++++++++|+||+++++++........+++|
T Consensus         4 ~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (265)
T cd08217           4 VLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNM---TEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVM   80 (265)
T ss_pred             eeeeeccCCCeEEEEeeecCCCCEEEEEEEecccC---CHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEe
Confidence            3478999999999999854 678899998864332   233456789999999999999999999988754433678999


Q ss_pred             EecCCCChhhhhccc--CCCCCCHHHHHHHHHHHHHHHHHhh-----cCCCCeEEeCcCCCCeEecCCCceEecccCchh
Q 006019          453 EYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMH-----QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN  525 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gL~yLH-----~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~  525 (664)
                      ||+++++|.+++...  ....+++.....++.+++.||+|||     +.+  ++|+||||+||+++.++.+||+|||+++
T Consensus        81 e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~--i~h~dl~p~nili~~~~~~kl~d~g~~~  158 (265)
T cd08217          81 EYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNT--VLHRDLKPANIFLDANNNVKLGDFGLAK  158 (265)
T ss_pred             hhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCc--ceecCCCHHHEEEecCCCEEEecccccc
Confidence            999999999998642  3467999999999999999999999     666  9999999999999999999999999988


Q ss_pred             hhhhh---------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCC
Q 006019          526 EIAMA---------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  596 (664)
Q Consensus       526 ~~~~~---------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  596 (664)
                      .....         ...+.+||......++.++||||||+++|||++|+.||....  ..+........          .
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~--~~~~~~~~~~~----------~  226 (265)
T cd08217         159 ILGHDSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARN--QLQLASKIKEG----------K  226 (265)
T ss_pred             cccCCcccccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcC--HHHHHHHHhcC----------C
Confidence            66432         123456777777778899999999999999999999995332  33333222211          1


Q ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          597 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       597 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      ....+......+.+++.+|++.+|++||++.+|++.
T Consensus       227 ~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~il~~  262 (265)
T cd08217         227 FRRIPYRYSSELNEVIKSMLNVDPDKRPSTEELLQL  262 (265)
T ss_pred             CCCCccccCHHHHHHHHHHccCCcccCCCHHHHhhC
Confidence            112233344678999999999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=100.00  E-value=1.4e-32  Score=280.24  Aligned_cols=239  Identities=19%  Similarity=0.324  Sum_probs=192.0

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||++... +++.+++|.+.....    ....+++.+|++++++++||||+++++++...+  ..++++
T Consensus         5 ~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~----~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--~~~lv~   78 (265)
T cd06605           5 YLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEIN----EAIQKQILRELDILHKCNSPYIVGFYGAFYNNG--DISICM   78 (265)
T ss_pred             HHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccC----hHHHHHHHHHHHHHHHCCCCchhhhheeeecCC--EEEEEE
Confidence            4478999999999999976 588899998865432    234567999999999999999999999998876  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh-
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~-~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~-  530 (664)
                      ||+++++|.+++.... ..++.....+++.+++.|++|||+ .+  ++||||||+||++++++.+||+|||.+...... 
T Consensus        79 e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~~~--i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~  155 (265)
T cd06605          79 EYMDGGSLDKILKEVQ-GRIPERILGKIAVAVLKGLTYLHEKHK--IIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSL  155 (265)
T ss_pred             EecCCCcHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHHcCCCC--eecCCCCHHHEEECCCCCEEEeecccchhhHHHH
Confidence            9999999999986432 678889999999999999999999 88  999999999999999999999999998765322 


Q ss_pred             ------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCC---CChHHHHHHHhcCCCCCccccCCCCCCCC
Q 006019          531 ------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDN---GSLEDWAADYLSGVQPLQQFVDPTLSSFD  601 (664)
Q Consensus       531 ------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  601 (664)
                            ...+.+||+..+..++.++||||||+++|||+||+.||....   ....+..........       +   ..+
T Consensus       156 ~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~-------~---~~~  225 (265)
T cd06605         156 AKTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYIVNEPP-------P---RLP  225 (265)
T ss_pred             hhcccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCccccccccHHHHHHHHhcCCC-------C---CCC
Confidence                  223556888777788999999999999999999999995432   223333333322210       1   111


Q ss_pred             HH-HHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          602 EE-QLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       602 ~~-~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .. ...++.+++.+||..+|++||++.+++.
T Consensus       226 ~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~  256 (265)
T cd06605         226 SGKFSPDFQDFVNLCLIKDPRERPSYKELLE  256 (265)
T ss_pred             hhhcCHHHHHHHHHHcCCCchhCcCHHHHhh
Confidence            11 4456889999999999999999999875

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=8.8e-33  Score=285.47  Aligned_cols=247  Identities=20%  Similarity=0.280  Sum_probs=189.7

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||.|++|.||++... ++..+|+|.+.....    .....++.+|++++++++||||+++++++........++|||
T Consensus         6 ~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~----~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e   81 (287)
T cd06621           6 LSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPN----PDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAME   81 (287)
T ss_pred             EEEeccCCceEEEEEEECCCCeEEEEEEEecCCc----hHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEEE
Confidence            378999999999999974 578899998864322    234577999999999999999999999987654446799999


Q ss_pred             ecCCCChhhhhcc--cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh-
Q 006019          454 YAPNGTLFEHIHI--KESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  530 (664)
Q Consensus       454 y~~~GsL~~~l~~--~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~-  530 (664)
                      |+++++|.+++..  .....++......|+.+++.||+|||+.+  ++|+||+|+||++++++.++|+|||++...... 
T Consensus        82 ~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~~--i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~  159 (287)
T cd06621          82 YCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSRK--IIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSL  159 (287)
T ss_pred             ecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEEecCCeEEEeeccccccccccc
Confidence            9999999988753  23456888999999999999999999998  999999999999999999999999997654321 


Q ss_pred             ------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCC---CChHHHHHHHhcCCCCCccccCCCCCCCC
Q 006019          531 ------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDN---GSLEDWAADYLSGVQPLQQFVDPTLSSFD  601 (664)
Q Consensus       531 ------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  601 (664)
                            ...+.+||......++.++||||||+++|||+||+.||....   ....+........ .. ..+.+.  ....
T Consensus       160 ~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~--~~~~  235 (287)
T cd06621         160 AGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVNM-PN-PELKDE--PGNG  235 (287)
T ss_pred             cccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCCCCChHHHHHHHhcC-Cc-hhhccC--CCCC
Confidence                  223456777777778899999999999999999999996432   1222222222111 10 011000  0101


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          602 EEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       602 ~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ......+.+++.+||+.+|++||++.|+++
T Consensus       236 ~~~~~~~~~li~~~l~~~p~~Rpt~~eil~  265 (287)
T cd06621         236 IKWSEEFKDFIKQCLEKDPTRRPTPWDMLE  265 (287)
T ss_pred             CchHHHHHHHHHHHcCCCcccCCCHHHHHh
Confidence            123467899999999999999999999887

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.7e-32  Score=277.37  Aligned_cols=240  Identities=19%  Similarity=0.247  Sum_probs=188.6

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|... ++..+++|.+.....     ...+.+.+|++++++++||||+++++++...+  ..+++|
T Consensus         7 ~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~-----~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~--~~~l~~   79 (262)
T cd06613           7 LIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPG-----DDFEIIQQEISMLKECRHPNIVAYFGSYLRRD--KLWIVM   79 (262)
T ss_pred             EEEEecCCCceEEEEeEecCCCCEEEEEEEEcCch-----hhHHHHHHHHHHHHhCCCCChhceEEEEEeCC--EEEEEE
Confidence            4478999999999999964 578899998865432     23567899999999999999999999998776  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++++|.+++... ...++......++.+++.|++|||+.+  ++|+||||+||++++++.+||+|||++......  
T Consensus        80 e~~~~~~l~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lh~~~--i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~  156 (262)
T cd06613          80 EYCGGGSLQDIYQVT-RGPLSELQIAYVCRETLKGLAYLHETG--KIHRDIKGANILLTEDGDVKLADFGVSAQLTATIA  156 (262)
T ss_pred             eCCCCCcHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHhCC--ceecCCChhhEEECCCCCEEECccccchhhhhhhh
Confidence            999999999988632 356889999999999999999999998  999999999999999999999999998765422  


Q ss_pred             -------hhhcccccccCCC---CCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 006019          531 -------EMAATSKKLSSAP---SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  600 (664)
Q Consensus       531 -------~~~~~~pe~~~~~---~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  600 (664)
                             ...+.+||.....   .++.++|||||||++|||+||+.||....  ..+-.......  .    ..+.....
T Consensus       157 ~~~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~--~~~~~~~~~~~--~----~~~~~~~~  228 (262)
T cd06613         157 KRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLH--PMRALFLISKS--N----FPPPKLKD  228 (262)
T ss_pred             ccccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHhc--c----CCCccccc
Confidence                   1234567776555   78889999999999999999999984322  11111111111  0    01111112


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          601 DEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       601 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ....+.++.+++.+||+.+|++||++.+|+.
T Consensus       229 ~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  259 (262)
T cd06613         229 KEKWSPVFHDFIKKCLTKDPKKRPTATKLLQ  259 (262)
T ss_pred             hhhhhHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            3344567899999999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=100.00  E-value=5.5e-33  Score=285.43  Aligned_cols=237  Identities=16%  Similarity=0.246  Sum_probs=188.2

Q ss_pred             hhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      .+.+.||+|+||.||+|... ++..+|+|.......    ....+.|.+|++++++++||||+++++++...+  ..++|
T Consensus         7 ~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~----~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~~lv   80 (277)
T cd06641           7 TKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEA----EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDT--KLWII   80 (277)
T ss_pred             hhheeEeecCCeEEEEEEECCCCcEEEEEEeccccc----hHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCC--eEEEE
Confidence            34578999999999999864 678999998753321    223467999999999999999999999998876  67999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh-
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  530 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~-  530 (664)
                      |||+++|+|.+++..   ..+++.....++.+++.|+.|||+.+  ++|+||||+||+++.++.++|+|||+++..... 
T Consensus        81 ~e~~~~~~l~~~i~~---~~~~~~~~~~~~~~l~~~l~~lh~~~--i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~  155 (277)
T cd06641          81 MEYLGGGSALDLLEP---GPLDETQIATILREILKGLDYLHSEK--KIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQ  155 (277)
T ss_pred             EEeCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHccCC--eecCCCCHHhEEECCCCCEEEeecccceecccch
Confidence            999999999998852   35899999999999999999999988  999999999999999999999999988654321 


Q ss_pred             --------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          531 --------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       531 --------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                              ...+.+||.......+.++|||||||++|||+||+.||...  ....+....... .         ....+.
T Consensus       156 ~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~--~~~~~~~~~~~~-~---------~~~~~~  223 (277)
T cd06641         156 IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSEL--HPMKVLFLIPKN-N---------PPTLEG  223 (277)
T ss_pred             hhhccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCcc--chHHHHHHHhcC-C---------CCCCCc
Confidence                    12345677776677888999999999999999999998422  122222211111 0         011122


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          603 EQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      ..+..+.+++.+||+.+|++||++.++++.
T Consensus       224 ~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~  253 (277)
T cd06641         224 NYSKPLKEFVEACLNKEPSFRPTAKELLKH  253 (277)
T ss_pred             ccCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence            334568899999999999999999999984

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=100.00  E-value=1.9e-32  Score=285.85  Aligned_cols=241  Identities=18%  Similarity=0.231  Sum_probs=186.2

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|... ++..|++|.+.......  ....+++.+|++++++++||||+++.++|...+  ..++|+
T Consensus        19 ~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~--~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~--~~~lv~   94 (307)
T cd06607          19 DLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQS--NEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREH--TAWLVM   94 (307)
T ss_pred             hheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCc--HHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCC--eEEEEH
Confidence            4478999999999999964 68899999885433221  234467899999999999999999999998877  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||++ |++.+++.. ....+++..+..++.|++.||.|||+.+  ++||||+|+||++++++.+||+|||+++.....  
T Consensus        95 e~~~-g~l~~~~~~-~~~~l~~~~~~~~~~ql~~~L~~LH~~~--i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~~~  170 (307)
T cd06607          95 EYCL-GSASDILEV-HKKPLQEVEIAAICHGALQGLAYLHSHE--RIHRDIKAGNILLTEPGTVKLADFGSASLVSPANS  170 (307)
T ss_pred             HhhC-CCHHHHHHH-cccCCCHHHHHHHHHHHHHHHHHHHHCC--ceecCCCcccEEECCCCCEEEeecCcceecCCCCC
Confidence            9997 577777643 2346899999999999999999999998  999999999999999999999999998765322  


Q ss_pred             ---hhhcccccccC---CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          531 ---EMAATSKKLSS---APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       531 ---~~~~~~pe~~~---~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                         ...+.+||...   ...++.++|||||||++|||+||+.||...  +........... .      .+..  .....
T Consensus       171 ~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~--~~~~~~~~~~~~-~------~~~~--~~~~~  239 (307)
T cd06607         171 FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM--NAMSALYHIAQN-D------SPTL--SSNDW  239 (307)
T ss_pred             ccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCc--cHHHHHHHHhcC-C------CCCC--Cchhh
Confidence               22345677642   355788999999999999999999998422  222222111111 0      0111  12234


Q ss_pred             HHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 006019          605 LETLGELIKSCVRADPEKRPTMRDIAAIL  633 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L  633 (664)
                      ...+.+++.+||+.+|++||+|.+|+...
T Consensus       240 ~~~~~~li~~~l~~~p~~Rp~~~~il~~~  268 (307)
T cd06607         240 SDYFRNFVDSCLQKIPQDRPSSEELLKHR  268 (307)
T ss_pred             CHHHHHHHHHHhcCChhhCcCHHHHhcCh
Confidence            56789999999999999999999998753

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=100.00  E-value=2.9e-33  Score=300.10  Aligned_cols=246  Identities=14%  Similarity=0.151  Sum_probs=182.8

Q ss_pred             hcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC---ceeEE
Q 006019          375 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP---FTRMM  450 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~---~~~~l  450 (664)
                      .+.||+|+||.||++.. .++..||+|++......   ....+.+.+|+++++.++|+||+++++++...+.   ...++
T Consensus         5 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~l   81 (372)
T cd07853           5 DRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQN---LVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIYV   81 (372)
T ss_pred             cceeeeCCCEEEEEEEECCCCCEEEEEeccccccc---hHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEEE
Confidence            47899999999999996 46899999988533211   2334678899999999999999999999876431   14689


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  530 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~  530 (664)
                      |+||+. ++|.+++.  ....+++.....++.+++.||+|||+.+  ++||||||+|||++.++.+||+|||+++.....
T Consensus        82 v~e~~~-~~l~~~~~--~~~~l~~~~~~~~~~qi~~aL~~LH~~~--ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~~  156 (372)
T cd07853          82 VTELMQ-SDLHKIIV--SPQPLSSDHVKVFLYQILRGLKYLHSAG--ILHRDIKPGNLLVNSNCVLKICDFGLARVEEPD  156 (372)
T ss_pred             Eeeccc-cCHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeCCCCChHHEEECCCCCEEeccccceeecccC
Confidence            999997 58888774  3456899999999999999999999998  999999999999999999999999998754211


Q ss_pred             ----------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHh----------------
Q 006019          531 ----------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYL----------------  583 (664)
Q Consensus       531 ----------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~----------------  583 (664)
                                ...+.+||...+ ..++.++|||||||++|||+||+.||....  ..+....+.                
T Consensus       157 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~--~~~~~~~i~~~~g~~~~~~~~~~~~  234 (372)
T cd07853         157 ESKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQS--PIQQLDLITDLLGTPSLEAMRSACE  234 (372)
T ss_pred             ccccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCC--HHHHHHHHHHHcCCCCHHHHHHhhH
Confidence                      223456776554 347889999999999999999999995322  111111110                


Q ss_pred             -------cCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          584 -------SGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       584 -------~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                             ........  .............++.+++.+|++.||++||++.|+++.
T Consensus       235 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h  288 (372)
T cd07853         235 GARAHILRGPHKPPS--LPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADALAH  288 (372)
T ss_pred             HHHHHHHhCCCCCCc--hHHhcccCCCCCHHHHHHHHHhCCCChhhCcCHHHHhcC
Confidence                   00000000  000001112234568899999999999999999999863

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=100.00  E-value=1.5e-32  Score=279.99  Aligned_cols=241  Identities=20%  Similarity=0.313  Sum_probs=188.2

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||.|+||.||+|... ++..+++|++......    ...+.+.+|+++++.++|+||+++++.+...+  ..++|+
T Consensus         5 ~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~----~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~iv~   78 (267)
T cd06610           5 LIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQ----TSVDELRKEVQAMSQCNHPNVVKYYTSFVVGD--ELWLVM   78 (267)
T ss_pred             eeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcc----hHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCC--EEEEEE
Confidence            4578999999999999954 6788999988543221    24567999999999999999999999998776  679999


Q ss_pred             EecCCCChhhhhcccCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhhh
Q 006019          453 EYAPNGTLFEHIHIKES-EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  531 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~-~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~~  531 (664)
                      ||+++++|.++++.... ..+++.....++.+++.|++|||+.+  ++||||||+||++++++.+||+|||++.......
T Consensus        79 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~~--i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~  156 (267)
T cd06610          79 PYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNG--QIHRDIKAGNILLGEDGSVKIADFGVSASLADGG  156 (267)
T ss_pred             eccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHhEEEcCCCCEEEcccchHHHhccCc
Confidence            99999999999875432 57899999999999999999999998  9999999999999999999999999987664221


Q ss_pred             -------------hhcccccccCCC-CCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 006019          532 -------------MAATSKKLSSAP-SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  597 (664)
Q Consensus       532 -------------~~~~~pe~~~~~-~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  597 (664)
                                   ..+.+||..... ..+.++|||||||++|||+||+.||....  ..+.........       .+..
T Consensus       157 ~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~--~~~~~~~~~~~~-------~~~~  227 (267)
T cd06610         157 DRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYP--PMKVLMLTLQND-------PPSL  227 (267)
T ss_pred             cccccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccC--hhhhHHHHhcCC-------CCCc
Confidence                         123456765544 67889999999999999999999994322  111122222111       0111


Q ss_pred             CCC--CHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          598 SSF--DEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       598 ~~~--~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ...  ....+..+.+++.+||+.+|++||++.++++
T Consensus       228 ~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~  263 (267)
T cd06610         228 ETGADYKKYSKSFRKMISLCLQKDPSKRPTAEELLK  263 (267)
T ss_pred             CCccccccccHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence            110  1233466889999999999999999999875

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=100.00  E-value=5.7e-33  Score=291.05  Aligned_cols=184  Identities=16%  Similarity=0.255  Sum_probs=149.2

Q ss_pred             cccccCCCeEEEEEEEC---CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          376 NVIGSSPIGTVYKGTLS---NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~---~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      ..||+|+||.||+|+..   ++..+|+|.+....       ....+.+|++++++++||||+++++++........++|+
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~-------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~   79 (317)
T cd07867           7 CKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTG-------ISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLF   79 (317)
T ss_pred             eEeccCCCeeEEEEEecCCCccceEEEEEecCCC-------CcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEE
Confidence            57999999999999965   34688999875322       124678999999999999999999998654444679999


Q ss_pred             EecCCCChhhhhccc-------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEe----cCCCceEeccc
Q 006019          453 EYAPNGTLFEHIHIK-------ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL----TEDYAAKLSDL  521 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~-------~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILl----d~~~~~kl~Df  521 (664)
                      ||+++ +|.+++...       ....+++.....++.|++.||+|||+.+  |+||||||+|||+    ++++.+||+||
T Consensus        80 e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~--ivH~Dlkp~Nil~~~~~~~~~~~kl~Df  156 (317)
T cd07867          80 DYAEH-DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANW--VLHRDLKPANILVMGEGPERGRVKIADM  156 (317)
T ss_pred             eeeCC-cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhCC--EEcCCCCHHHEEEccCCCCCCcEEEeec
Confidence            99975 777766421       2235889999999999999999999998  9999999999999    56789999999


Q ss_pred             Cchhhhhhh------------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCcc
Q 006019          522 SFWNEIAMA------------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYL  569 (664)
Q Consensus       522 Gla~~~~~~------------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~  569 (664)
                      |+++.....            ...+.+||.... ..++.++|||||||++|||+||+.||.
T Consensus       157 G~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~  217 (317)
T cd07867         157 GFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFH  217 (317)
T ss_pred             cceeccCCCcccccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCcc
Confidence            999765321            223567886654 457889999999999999999999985

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=100.00  E-value=6e-33  Score=292.87  Aligned_cols=244  Identities=16%  Similarity=0.226  Sum_probs=184.8

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+++.. +++.+|+|.+.......  ......|.+|+.++..++|+||+++++++.+.+  ..++||
T Consensus         5 ~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--~~~lv~   80 (332)
T cd05623           5 ILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLK--RAETACFREERDVLVNGDNQWITTLHYAFQDEN--NLYLVM   80 (332)
T ss_pred             EEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHH--hhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCC--EEEEEE
Confidence            3478999999999999975 47789999886432111  223456889999999999999999999998776  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++|+|.++++. ....+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....   
T Consensus        81 ey~~~g~L~~~l~~-~~~~l~~~~~~~~~~qi~~al~~lH~~~--iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~~~  157 (332)
T cd05623          81 DYYVGGDLLTLLSK-FEDRLPEDMARFYLAEMVIAIDSVHQLH--YVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGT  157 (332)
T ss_pred             eccCCCcHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCC--eEecCCCHHHEEECCCCCEEEeecchheecccCCc
Confidence            99999999999963 2346899999999999999999999998  99999999999999999999999999865421   


Q ss_pred             -------hhhhcccccccC-----CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 006019          530 -------AEMAATSKKLSS-----APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  597 (664)
Q Consensus       530 -------~~~~~~~pe~~~-----~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  597 (664)
                             ....+.+||+..     ...++.++|||||||++|||++|+.||..  .+..+............      ..
T Consensus       158 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~--~~~~~~~~~i~~~~~~~------~~  229 (332)
T cd05623         158 VQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYA--ESLVETYGKIMNHKERF------QF  229 (332)
T ss_pred             ceecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCC--CCHHHHHHHHhCCCccc------cC
Confidence                   123455677654     34578899999999999999999999943  33334433333321111      01


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCC--CCCHHHHHHH
Q 006019          598 SSFDEEQLETLGELIKSCVRADPEK--RPTMRDIAAI  632 (664)
Q Consensus       598 ~~~~~~~~~~l~~l~~~Cl~~~P~~--RPs~~ev~~~  632 (664)
                      .........++.+++.+|+..++++  |+++.++++.
T Consensus       230 p~~~~~~s~~~~~li~~ll~~~~~r~~r~~~~~~~~h  266 (332)
T cd05623         230 PAQVTDVSEDAKDLIRRLICSREHRLGQNGIEDFKQH  266 (332)
T ss_pred             CCccccCCHHHHHHHHHHccChhhhcCCCCHHHHhCC
Confidence            1111223456788898877654444  6889888766

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=100.00  E-value=4.5e-33  Score=297.21  Aligned_cols=239  Identities=17%  Similarity=0.253  Sum_probs=182.9

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||+++.. ++..+|+|++.......  ......+.+|++++.+++|+||+++++++.+.+  ..++|||
T Consensus         6 ~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~--~~~lv~E   81 (360)
T cd05627           6 LKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLE--KEQVAHIRAERDILVEADGAWVVKMFYSFQDKR--NLYLIME   81 (360)
T ss_pred             EEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhh--hhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC--EEEEEEe
Confidence            478999999999999965 58899999986432211  233467889999999999999999999998776  7799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....    
T Consensus        82 ~~~gg~L~~~l~~--~~~l~~~~~~~~~~qi~~~L~~lH~~g--ivHrDLkp~NIli~~~~~vkL~DfG~~~~~~~~~~~  157 (360)
T cd05627          82 FLPGGDMMTLLMK--KDTLSEEATQFYIAETVLAIDAIHQLG--FIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRT  157 (360)
T ss_pred             CCCCccHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEccCCCHHHEEECCCCCEEEeeccCCccccccccc
Confidence            9999999999863  356889999999999999999999998  99999999999999999999999999764321    


Q ss_pred             ----------------------------------------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCcc
Q 006019          530 ----------------------------------------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYL  569 (664)
Q Consensus       530 ----------------------------------------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~  569 (664)
                                                              +...+.+||......++.++|||||||++|||+||+.||.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~Pf~  237 (360)
T cd05627         158 EFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFC  237 (360)
T ss_pred             ccccccccCCcccccccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecccCCCCCC
Confidence                                                    1234557787777778999999999999999999999994


Q ss_pred             CCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCC---HHHHHH
Q 006019          570 VDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT---MRDIAA  631 (664)
Q Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs---~~ev~~  631 (664)
                      ..  ...+............  .+.+. ..    ...++.+++.+++ .+|.+|++   +.++.+
T Consensus       238 ~~--~~~~~~~~i~~~~~~~--~~p~~-~~----~s~~~~~li~~l~-~~p~~R~~~~~~~ei~~  292 (360)
T cd05627         238 SE--TPQETYRKVMNWKETL--VFPPE-VP----ISEKAKDLILRFC-TDSENRIGSNGVEEIKS  292 (360)
T ss_pred             CC--CHHHHHHHHHcCCCce--ecCCC-CC----CCHHHHHHHHHhc-cChhhcCCCCCHHHHhc
Confidence            32  2233333332211111  01111 11    2245778888766 49999986   455544

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.7e-32  Score=282.07  Aligned_cols=239  Identities=21%  Similarity=0.268  Sum_probs=186.5

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||.|+||.||+|... ++..+++|......     ....+.|.+|++++++++|+||+++++++....  ..++||
T Consensus         9 i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~-----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   81 (280)
T cd06611           9 IIGELGDGAFGKVYKAQHKETGLFAAAKIIQIES-----EEELEDFMVEIDILSECKHPNIVGLYEAYFYEN--KLWILI   81 (280)
T ss_pred             HHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCC-----HHHHHHHHHHHHHHHhCCCCceeEEEEEEecCC--eEEEEe
Confidence            4477999999999999975 58899999886432     234567999999999999999999999998766  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++|+|.+++.. ....+++.....++.+++.|+.|||+.+  ++|+||||+||+++.++.+||+|||++......  
T Consensus        82 e~~~~~~L~~~~~~-~~~~l~~~~~~~~~~ql~~~l~~lh~~~--i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~  158 (280)
T cd06611          82 EFCDGGALDSIMLE-LERGLTEPQIRYVCRQMLEALNFLHSHK--VIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQ  158 (280)
T ss_pred             eccCCCcHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCChhhEEECCCCCEEEccCccchhhccccc
Confidence            99999999998863 2346899999999999999999999998  999999999999999999999999987654321  


Q ss_pred             -------hhhcccccccC-----CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 006019          531 -------EMAATSKKLSS-----APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       531 -------~~~~~~pe~~~-----~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                             ...+.+||...     ...++.++||||||+++|||++|+.||...  +..+..........       +.+ 
T Consensus       159 ~~~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~--~~~~~~~~~~~~~~-------~~~-  228 (280)
T cd06611         159 KRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHEL--NPMRVLLKILKSEP-------PTL-  228 (280)
T ss_pred             ccceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccC--CHHHHHHHHhcCCC-------CCc-
Confidence                   22345666542     344678999999999999999999998432  22222222221110       010 


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      ..+.....++.+++.+||+.+|++||++.++++.
T Consensus       229 ~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  262 (280)
T cd06611         229 DQPSKWSSSFNDFLKSCLVKDPDDRPTAAELLKH  262 (280)
T ss_pred             CCcccCCHHHHHHHHHHhccChhhCcCHHHHhcC
Confidence            1122234568899999999999999999998764

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=100.00  E-value=1.2e-32  Score=287.03  Aligned_cols=244  Identities=18%  Similarity=0.183  Sum_probs=190.5

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||++... .++.|++|.+.......  ......+.+|+++++.++||||+++++.+...+  ..++||
T Consensus         5 ~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~--~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--~~~lv~   80 (305)
T cd05609           5 TIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLIL--RNQIQQVFVERDILTFAENPFVVSMFCSFETKR--HLCMVM   80 (305)
T ss_pred             EeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhh--HHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCC--EEEEEE
Confidence            3478999999999999965 57889999886543211  233467889999999999999999999998776  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh----
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA----  528 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~----  528 (664)
                      ||+++|+|.+++..  ...+++.....++.+++.|++|||+.+  ++||||||+||+++.++.+|++|||+++...    
T Consensus        81 e~~~g~~L~~~l~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~~~  156 (305)
T cd05609          81 EYVEGGDCATLLKN--IGALPVDMARMYFAETVLALEYLHNYG--IVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLT  156 (305)
T ss_pred             ecCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCchHHEEECCCCCEEEeeCCCccccCcCcc
Confidence            99999999999863  346899999999999999999999988  9999999999999999999999999886421    


Q ss_pred             --------------------hhhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCC
Q 006019          529 --------------------MAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP  588 (664)
Q Consensus       529 --------------------~~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~  588 (664)
                                          .....+.+||+......+.++|||||||++||++||+.||..  ....++..........
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~--~~~~~~~~~~~~~~~~  234 (305)
T cd05609         157 TNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFG--DTPEELFGQVISDDIE  234 (305)
T ss_pred             ccccccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHHhcccC
Confidence                                011234567777667789999999999999999999999943  2333433333222111


Q ss_pred             CccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHh
Q 006019          589 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  635 (664)
Q Consensus       589 ~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~  635 (664)
                           .+..   ....+..+.+++.+||+.+|++||++.++.+.|+.
T Consensus       235 -----~~~~---~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~ll~~  273 (305)
T cd05609         235 -----WPEG---DEALPADAQDLISRLLRQNPLERLGTGGAFEVKQH  273 (305)
T ss_pred             -----CCCc---cccCCHHHHHHHHHHhccChhhccCccCHHHHHhC
Confidence                 1111   11233568899999999999999998777777775

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=100.00  E-value=2e-32  Score=279.45  Aligned_cols=239  Identities=16%  Similarity=0.216  Sum_probs=183.6

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. ++..+|+|.+.....     .....+.+|+.+++.++||||+++++++...+  ..++|+
T Consensus        13 ~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~-----~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~--~~~lv~   85 (267)
T cd06645          13 LIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPG-----EDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRD--KLWICM   85 (267)
T ss_pred             HHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCch-----hHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCC--EEEEEE
Confidence            4478999999999999864 688999998864432     22356889999999999999999999998776  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++|+|.++++.  ...+++.+...++.+++.|+.|||+.+  ++|+||||+||+++.++.+||+|||++.....   
T Consensus        86 e~~~~~~L~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~  161 (267)
T cd06645          86 EFCGGGSLQDIYHV--TGPLSESQIAYVSRETLQGLYYLHSKG--KMHRDIKGANILLTDNGHVKLADFGVSAQITATIA  161 (267)
T ss_pred             eccCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEECCCCCEEECcceeeeEccCccc
Confidence            99999999998863  346899999999999999999999998  99999999999999999999999999765421   


Q ss_pred             ------hhhhcccccccC---CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 006019          530 ------AEMAATSKKLSS---APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  600 (664)
Q Consensus       530 ------~~~~~~~pe~~~---~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  600 (664)
                            ....+.+||...   ...++.++|||||||++|||++|+.||......  ...........     ..+.... 
T Consensus       162 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~--~~~~~~~~~~~-----~~~~~~~-  233 (267)
T cd06645         162 KRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLHPM--RALFLMTKSNF-----QPPKLKD-  233 (267)
T ss_pred             ccccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccccch--hhHHhhhccCC-----CCCcccc-
Confidence                  123345677642   345788999999999999999999998432211  11111111100     0111110 


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          601 DEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       601 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .......+.+++.+||+.+|++||++++|++
T Consensus       234 ~~~~~~~~~~li~~~l~~~P~~R~~~~~ll~  264 (267)
T cd06645         234 KMKWSNSFHHFVKMALTKNPKKRPTAEKLLQ  264 (267)
T ss_pred             cCCCCHHHHHHHHHHccCCchhCcCHHHHhc
Confidence            0112345889999999999999999998875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=100.00  E-value=7.3e-33  Score=286.58  Aligned_cols=248  Identities=21%  Similarity=0.302  Sum_probs=186.1

Q ss_pred             HHHHHHhhhh--cccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEe
Q 006019          366 ELEAACEDFS--NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCE  441 (664)
Q Consensus       366 el~~~~~~~~--~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~  441 (664)
                      ++.+++++|.  +.||+|+||.||++.. .++..+|+|.+....      ....++.+|+.+++++ +|||++++++++.
T Consensus        16 ~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~------~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~   89 (291)
T cd06639          16 SLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPIS------DVDEEIEAEYNILQSLPNHPNVVKFYGMFY   89 (291)
T ss_pred             cCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccc------cHHHHHHHHHHHHHHhcCCCCeEEEEEEEE
Confidence            3333344443  7899999999999996 468889999875321      1245678899999999 8999999999987


Q ss_pred             cCCC---ceeEEEEEecCCCChhhhhccc--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCce
Q 006019          442 EEEP---FTRMMVFEYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAA  516 (664)
Q Consensus       442 ~~~~---~~~~lV~Ey~~~GsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~  516 (664)
                      ..+.   ...++|+||+++|+|.++++..  ....+++..+..++.+++.||+|||+.+  ++||||||+||++++++.+
T Consensus        90 ~~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~--ivH~dlkp~nili~~~~~~  167 (291)
T cd06639          90 KADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNNR--IIHRDVKGNNILLTTEGGV  167 (291)
T ss_pred             eccccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeccCCCHHHEEEcCCCCE
Confidence            5431   2478999999999999987532  3456899999999999999999999988  9999999999999999999


Q ss_pred             EecccCchhhhhhh---------hhhcccccccCCC-----CCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHH
Q 006019          517 KLSDLSFWNEIAMA---------EMAATSKKLSSAP-----SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY  582 (664)
Q Consensus       517 kl~DfGla~~~~~~---------~~~~~~pe~~~~~-----~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~  582 (664)
                      ||+|||+++.....         ...+.+||.....     .++.++|||||||++|||+||+.||....  ..+-....
T Consensus       168 kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~--~~~~~~~~  245 (291)
T cd06639         168 KLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMH--PVKTLFKI  245 (291)
T ss_pred             EEeecccchhcccccccccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCc--HHHHHHHH
Confidence            99999998764321         1234567764322     35789999999999999999999984321  11111111


Q ss_pred             hcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          583 LSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       583 ~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ...  ....+.+      ++.....+.+++.+||+.+|++||++.|+++
T Consensus       246 ~~~--~~~~~~~------~~~~~~~l~~li~~~l~~~p~~Rps~~~il~  286 (291)
T cd06639         246 PRN--PPPTLLH------PEKWCRSFNHFISQCLIKDFEARPSVTHLLE  286 (291)
T ss_pred             hcC--CCCCCCc------ccccCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence            111  0111111      2223356889999999999999999999876

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=100.00  E-value=2.9e-32  Score=277.57  Aligned_cols=239  Identities=20%  Similarity=0.316  Sum_probs=187.4

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||+|... ++..+++|.+......   ....+.+..|++++++++|+||+++++++...+  ..++|+|
T Consensus         5 ~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~--~~~lv~e   79 (264)
T cd06626           5 GNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDND---PKTIKEIADEMKVLELLKHPNLVKYYGVEVHRE--KVYIFME   79 (264)
T ss_pred             eeEeecCCCcEEEEEEECCCCcEEEEEEEECcccc---hHHHHHHHHHHHHHHhCCCCChhheeeeEecCC--EEEEEEe
Confidence            478999999999999964 6889999998754432   345678999999999999999999999988766  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      |+++++|.++++.  ...+++..+..|+.++++|++|||+.+  ++|+||+|+||++++++.+||+|||++......   
T Consensus        80 ~~~~~~L~~~~~~--~~~~~~~~~~~i~~~i~~~l~~lh~~~--i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~  155 (264)
T cd06626          80 YCSGGTLEELLEH--GRILDEHVIRVYTLQLLEGLAYLHSHG--IVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTT  155 (264)
T ss_pred             cCCCCcHHHHHhh--cCCCChHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEECCCCCEEEcccccccccCCCCCc
Confidence            9999999999863  345889999999999999999999998  999999999999999999999999998765321   


Q ss_pred             ----------hhhcccccccCCCC---CCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 006019          531 ----------EMAATSKKLSSAPS---ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  597 (664)
Q Consensus       531 ----------~~~~~~pe~~~~~~---~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  597 (664)
                                ...+.+||+.....   .+.++||||||+++||+++|+.||.... ............       ..+.+
T Consensus       156 ~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~-~~~~~~~~~~~~-------~~~~~  227 (264)
T cd06626         156 MGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELD-NEFQIMFHVGAG-------HKPPI  227 (264)
T ss_pred             ccccccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCc-chHHHHHHHhcC-------CCCCC
Confidence                      12344577665544   7889999999999999999999995322 111222111111       01111


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          598 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       598 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .. .......+.+++.+||+.+|++||++.+++.
T Consensus       228 ~~-~~~~~~~~~~li~~~l~~~p~~R~~~~~i~~  260 (264)
T cd06626         228 PD-SLQLSPEGKDFLDRCLESDPKKRPTASELLQ  260 (264)
T ss_pred             Cc-ccccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            11 1112456789999999999999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=100.00  E-value=2.4e-33  Score=289.27  Aligned_cols=248  Identities=19%  Similarity=0.268  Sum_probs=185.3

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|... +++.+|+|++......   ....+.+.+|++++++++||||+++++++...+  ..++|+
T Consensus         5 ~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   79 (286)
T cd07846           5 NLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDD---KMVKKIAMREIRMLKQLRHENLVNLIEVFRRKK--RLYLVF   79 (286)
T ss_pred             EeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCc---chhhHHHHHHHHHHHhcCCcchhhHHHhcccCC--eEEEEE
Confidence            3478999999999999976 5889999987543321   134567889999999999999999999998766  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++++|.++.+.  ...++|..+..++.+++.||+|||+.+  ++||||+|+||++++++.+||+|||+++.....  
T Consensus        80 e~~~~~~l~~~~~~--~~~~~~~~~~~~~~~i~~~l~~LH~~~--i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~~  155 (286)
T cd07846          80 EFVDHTVLDDLEKY--PNGLDESRVRKYLFQILRGIEFCHSHN--IIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGE  155 (286)
T ss_pred             ecCCccHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCCHHHEEECCCCcEEEEeeeeeeeccCCcc
Confidence            99999999887652  345899999999999999999999988  999999999999999999999999998755321  


Q ss_pred             -------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHh--cC-----------CCCC
Q 006019          531 -------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYL--SG-----------VQPL  589 (664)
Q Consensus       531 -------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~--~~-----------~~~~  589 (664)
                             ...+.+||+..+ ...+.++|||||||++|||+||+.||..+. ....+.....  ..           ....
T Consensus       156 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (286)
T cd07846         156 VYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDS-DIDQLYHIIKCLGNLIPRHQEIFQKNPLF  234 (286)
T ss_pred             ccCcccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCCc-hHHHHHHHHHHhCCCchhhHHHhccchHh
Confidence                   123456776543 446789999999999999999999885322 2222111100  00           0000


Q ss_pred             ccccCCCCCC------CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          590 QQFVDPTLSS------FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       590 ~~~~d~~~~~------~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .....+....      ..+..+..+.+++.+||+.+|++||++.++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  282 (286)
T cd07846         235 AGMRLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLH  282 (286)
T ss_pred             hccccccccCcchHHHhCCCcCHHHHHHHHHHhcCCcccchhHHHHhc
Confidence            0000011000      01223467899999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9.1e-33  Score=291.34  Aligned_cols=244  Identities=19%  Similarity=0.251  Sum_probs=183.4

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+++.. +++.+|+|++.......  ....+.|.+|+.++..++|+||+++++++.+.+  ..++||
T Consensus         5 ~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--~~~lv~   80 (331)
T cd05597           5 ILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLK--RAETACFREERDVLVNGDRRWITNLHYAFQDEN--NLYLVM   80 (331)
T ss_pred             EEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhh--hhhHHHHHHHHHHHHhCCCCCCCceEEEEecCC--eEEEEE
Confidence            4578999999999999965 58899999986432211  223456889999999999999999999998876  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++|+|.+++.. ....+++.....++.|++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....   
T Consensus        81 e~~~g~~L~~~l~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~  157 (331)
T cd05597          81 DYYVGGDLLTLLSK-FEDRLPEDMARFYLAEMVLAIDSVHQLG--YVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGT  157 (331)
T ss_pred             ecCCCCcHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhCC--eEECCCCHHHEEECCCCCEEEEECCceeecCCCCC
Confidence            99999999999853 2456889999999999999999999998  99999999999999999999999999865421   


Q ss_pred             -------hhhhcccccccC-----CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 006019          530 -------AEMAATSKKLSS-----APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  597 (664)
Q Consensus       530 -------~~~~~~~pe~~~-----~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  597 (664)
                             ....+.+||...     ...++.++|||||||++|||++|+.||..  ....+.............  +.+. 
T Consensus       158 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~--~~~~~~~~~i~~~~~~~~--~~~~-  232 (331)
T cd05597         158 VQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYA--ESLVETYGKIMNHKEHFQ--FPPD-  232 (331)
T ss_pred             ccccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCC--CCHHHHHHHHHcCCCccc--CCCc-
Confidence                   123455677654     24567899999999999999999999943  233333333332211111  1111 


Q ss_pred             CCCCHHHHHHHHHHHHHhccC--CCCCCCCHHHHHHH
Q 006019          598 SSFDEEQLETLGELIKSCVRA--DPEKRPTMRDIAAI  632 (664)
Q Consensus       598 ~~~~~~~~~~l~~l~~~Cl~~--~P~~RPs~~ev~~~  632 (664)
                         ....+..+.+++.+|+..  ++..||+++++++.
T Consensus       233 ---~~~~~~~~~~li~~ll~~~~~r~~r~~~~~~l~h  266 (331)
T cd05597         233 ---VTDVSEEAKDLIRRLICSPETRLGRNGLQDFKDH  266 (331)
T ss_pred             ---cCCCCHHHHHHHHHHccCcccccCCCCHHHHhcC
Confidence               111334577888886654  34447888888765

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5e-33  Score=293.30  Aligned_cols=230  Identities=17%  Similarity=0.210  Sum_probs=175.9

Q ss_pred             cccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc---CCCcccceEEEEecCCCceeEEEEE
Q 006019          378 IGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV---NHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       378 iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l---~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      ||+|+||.||+|+.. ++..+|+|++.......  ......+..|..++.+.   +||||+++++++...+  ..++|||
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~--~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~--~~~lv~e   76 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVA--KKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDS--DLYLVTD   76 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhh--hhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCC--eEEEEEc
Confidence            799999999999964 58899999986432211  12233456677777665   6999999999998776  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....    
T Consensus        77 ~~~~g~L~~~l~~--~~~~~~~~~~~~~~qil~al~~LH~~~--ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~  152 (330)
T cd05586          77 YMSGGELFWHLQK--EGRFSEDRAKFYIAELVLALEHLHKYD--IVYRDLKPENILLDATGHIALCDFGLSKANLTDNKT  152 (330)
T ss_pred             CCCCChHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEeccCCHHHeEECCCCCEEEecCCcCcCCCCCCCC
Confidence            9999999988863  456899999999999999999999998  99999999999999999999999999875321    


Q ss_pred             -----hhhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          530 -----AEMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       530 -----~~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                           ....+.+||.... ..++.++|||||||++|||+||+.||..  ....+.......+...+   ..       ..
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~--~~~~~~~~~i~~~~~~~---~~-------~~  220 (330)
T cd05586         153 TNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYA--EDTQQMYRNIAFGKVRF---PK-------NV  220 (330)
T ss_pred             ccCccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCC--CCHHHHHHHHHcCCCCC---CC-------cc
Confidence                 1234567886643 3478999999999999999999999943  23333333322221111   00       11


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMR  627 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~  627 (664)
                      ....+.+++.+||+.||++||++.
T Consensus       221 ~~~~~~~li~~~L~~~P~~R~~~~  244 (330)
T cd05586         221 LSDEGRQFVKGLLNRNPQHRLGAH  244 (330)
T ss_pred             CCHHHHHHHHHHcCCCHHHCCCCC
Confidence            234678999999999999999543

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=100.00  E-value=9.9e-33  Score=287.12  Aligned_cols=245  Identities=16%  Similarity=0.225  Sum_probs=182.9

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||+|+.. ++..||+|.+.......    ....+.+|++++++++|+||+++++++...+  ..++|+|
T Consensus        11 ~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~----~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~--~~~lv~e   84 (301)
T cd07873          11 LDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEG----APCTAIREVSLLKDLKHANIVTLHDIIHTEK--SLTLVFE   84 (301)
T ss_pred             eeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccC----chhHHHHHHHHHHhcCCCCcceEEEEEecCC--eEEEEEe
Confidence            478999999999999865 57889999886543222    2346778999999999999999999998776  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      |++ ++|.+++.. ....+++.....++.+++.||+|||+.+  ++||||||+||++++++.+||+|||+++.....   
T Consensus        85 ~~~-~~l~~~l~~-~~~~~~~~~~~~~~~qi~~aL~~lH~~~--i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~  160 (301)
T cd07873          85 YLD-KDLKQYLDD-CGNSINMHNVKLFLFQLLRGLNYCHRRK--VLHRDLKPQNLLINERGELKLADFGLARAKSIPTKT  160 (301)
T ss_pred             ccc-cCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeCCCCCHHHEEECCCCcEEECcCcchhccCCCCCc
Confidence            997 589888763 2446889999999999999999999998  999999999999999999999999998754211   


Q ss_pred             ------hhhcccccccC-CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhc---CC--CCCccc------
Q 006019          531 ------EMAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLS---GV--QPLQQF------  592 (664)
Q Consensus       531 ------~~~~~~pe~~~-~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~---~~--~~~~~~------  592 (664)
                            ...+.+||... ...++.++|||||||++|||+||+.||....  ..+.......   ..  .....+      
T Consensus       161 ~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (301)
T cd07873         161 YSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGST--VEEQLHFIFRILGTPTEETWPGILSNEEF  238 (301)
T ss_pred             ccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHcCCCChhhchhhhccccc
Confidence                  22344566543 3446789999999999999999999995322  2222111111   00  000000      


Q ss_pred             cC---CCC-----CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          593 VD---PTL-----SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       593 ~d---~~~-----~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ..   +..     ..........+.+++.+|++.||.+|||++|+++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil~  285 (301)
T cd07873         239 KSYNYPKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMK  285 (301)
T ss_pred             cccccCccccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence            00   000     0011223456889999999999999999999886

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=100.00  E-value=2.6e-32  Score=283.45  Aligned_cols=248  Identities=18%  Similarity=0.255  Sum_probs=190.7

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      ..||+|+||.||+|... ++..+++|.+.....     ...+.+.+|+.+++.++||||+++++++...+  ..++|+||
T Consensus        27 ~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~-----~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~--~~~iv~e~   99 (297)
T cd06659          27 IKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQ-----QRRELLFNEVVIMRDYQHQNVVEMYKSYLVGE--ELWVLMEF   99 (297)
T ss_pred             hhcCCCCceeEEEEEEcCCCCEEEEEEEEeccc-----chHHHHHHHHHHHHhCCCCchhhhhhheeeCC--eEEEEEec
Confidence            46999999999999864 688999999865332     12456889999999999999999999998776  67999999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh-----
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM-----  529 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~-----  529 (664)
                      +++++|.+++..   ..+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++....     
T Consensus       100 ~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~L~~LH~~~--ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~~~  174 (297)
T cd06659         100 LQGGALTDIVSQ---TRLNEEQIATVCESVLQALCYLHSQG--VIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKR  174 (297)
T ss_pred             CCCCCHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHeEEccCCcEEEeechhHhhcccccccc
Confidence            999999987742   45899999999999999999999998  99999999999999999999999999875432     


Q ss_pred             ----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 006019          530 ----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  605 (664)
Q Consensus       530 ----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  605 (664)
                          ....+.+||+.....++.++|||||||++|||++|+.||....  ..+..........  .     .. .......
T Consensus       175 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~--~~~~~~~~~~~~~--~-----~~-~~~~~~~  244 (297)
T cd06659         175 KSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDS--PVQAMKRLRDSPP--P-----KL-KNAHKIS  244 (297)
T ss_pred             cceecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHhccCC--C-----Cc-cccCCCC
Confidence                1223567887777778999999999999999999999984322  1221211111100  0     00 0111223


Q ss_pred             HHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCCCCCC
Q 006019          606 ETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAI  645 (664)
Q Consensus       606 ~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~~~~~  645 (664)
                      ..+.+++.+||+.+|++||++.++++.---.....|+..+
T Consensus       245 ~~l~~~i~~~l~~~P~~Rps~~~ll~~~~~~~~~~~~~~~  284 (297)
T cd06659         245 PVLRDFLERMLTREPQERATAQELLDHPFLLQTGLPECLV  284 (297)
T ss_pred             HHHHHHHHHHhcCCcccCcCHHHHhhChhhccCCCccccc
Confidence            4588999999999999999999999853322233344444

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>PHA03211 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.4e-32  Score=299.47  Aligned_cols=241  Identities=11%  Similarity=0.146  Sum_probs=179.5

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||+|+.. .++.||||...           ...+.+|++++++++|+|||++++++...+  ..++|||
T Consensus       174 ~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~-----------~~~~~~E~~iL~~L~HpnIv~l~~~~~~~~--~~~lv~e  240 (461)
T PHA03211        174 HRALTPGSEGCVFESSHPDYPQRVVVKAGW-----------YASSVHEARLLRRLSHPAVLALLDVRVVGG--LTCLVLP  240 (461)
T ss_pred             EEEEccCCCeEEEEEEECCCCCEEEEeccc-----------ccCHHHHHHHHHHCCCCCCCcEEEEEEECC--EEEEEEE
Confidence            478999999999999975 47889998532           124678999999999999999999998876  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+. |+|.+++.. ....++|..+.+|+.|++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....    
T Consensus       241 ~~~-~~L~~~l~~-~~~~l~~~~~~~i~~qi~~aL~yLH~~g--IvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~  316 (461)
T PHA03211        241 KYR-SDLYTYLGA-RLRPLGLAQVTAVARQLLSAIDYIHGEG--IIHRDIKTENVLVNGPEDICLGDFGAACFARGSWST  316 (461)
T ss_pred             ccC-CCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHCC--EEECcCCHHHEEECCCCCEEEcccCCceeccccccc
Confidence            995 799888753 2346999999999999999999999998  99999999999999999999999999875421    


Q ss_pred             -------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCC-----CChHHHHHHHhcCCCC----Ccccc
Q 006019          530 -------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDN-----GSLEDWAADYLSGVQP----LQQFV  593 (664)
Q Consensus       530 -------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~-----~~~~~~~~~~~~~~~~----~~~~~  593 (664)
                             ....+.+||+.....++.++|||||||++|||++|..|+....     ......+...+.....    .....
T Consensus       317 ~~~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~  396 (461)
T PHA03211        317 PFHYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLFSASRGDERRPYDAQILRIIRQAQVHVDEFPQHA  396 (461)
T ss_pred             ccccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcccCCcccccCCcHHHHHHHHHhhccccccCCCCc
Confidence                   2334567888877788999999999999999999887653211     1111111111111000    00000


Q ss_pred             ----------------CCCCCC--CC--HHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          594 ----------------DPTLSS--FD--EEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       594 ----------------d~~~~~--~~--~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                                      .+....  ..  ......+.+|+.+||+.||.+|||+.|+++.
T Consensus       397 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~DP~~RPsa~elL~h  455 (461)
T PHA03211        397 GSRLVSQYRHRAARNRRPAYTRPAWTRYYKLDLDVEYLVCRALTFDGARRPSAAELLRL  455 (461)
T ss_pred             chHHHHHHHhhhhcccCCccCCcchhhhccccchHHHHHHHHcccChhhCcCHHHHhhC
Confidence                            000000  00  0112357899999999999999999999863

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=100.00  E-value=1.1e-32  Score=294.84  Aligned_cols=247  Identities=16%  Similarity=0.200  Sum_probs=183.7

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC----cee
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----FTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~----~~~  448 (664)
                      +.+.||+|+||.||++... .++.+|||++......   ....+.+.+|+.+++.++||||+++++++.....    ...
T Consensus        28 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~~~~  104 (364)
T cd07875          28 NLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQN---QTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDV  104 (364)
T ss_pred             EEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccC---chhHHHHHHHHHHHHhcCCCCccccceeecccccccccCeE
Confidence            3478999999999999854 5888999988643221   2334678899999999999999999998764321    146


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++||||+++ +|.+.+.    ..+++..+..++.|++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...
T Consensus       105 ~lv~e~~~~-~l~~~~~----~~~~~~~~~~~~~qi~~aL~~LH~~~--ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~  177 (364)
T cd07875         105 YIVMELMDA-NLCQVIQ----MELDHERMSYLLYQMLCGIKHLHSAG--IIHRDLKPSNIVVKSDCTLKILDFGLARTAG  177 (364)
T ss_pred             EEEEeCCCC-CHHHHHH----hcCCHHHHHHHHHHHHHHHHHHhhCC--eecCCCCHHHEEECCCCcEEEEeCCCccccC
Confidence            899999975 7777664    24788999999999999999999998  9999999999999999999999999987653


Q ss_pred             h--------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcC---------------
Q 006019          529 M--------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG---------------  585 (664)
Q Consensus       529 ~--------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~---------------  585 (664)
                      .        ....+.+||......++.++|||||||++|||+||+.||....  ..+.....+..               
T Consensus       178 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (364)
T cd07875         178 TSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTD--HIDQWNKVIEQLGTPCPEFMKKLQPT  255 (364)
T ss_pred             CCCcccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHhcCCCCHHHHHhhhHH
Confidence            2        1234567888777788999999999999999999999995322  11111111110               


Q ss_pred             -------CCCCc-----cccC----CCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          586 -------VQPLQ-----QFVD----PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       586 -------~~~~~-----~~~d----~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                             .....     ....    +............+.+++.+|++.||++|||+.++++.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~t~~e~L~h  318 (364)
T cd07875         256 VRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQH  318 (364)
T ss_pred             HHHHHhhCCCcCCCChHhhCccccccccccccccccHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence                   00000     0000    00001111123468899999999999999999999874

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2e-32  Score=286.82  Aligned_cols=241  Identities=20%  Similarity=0.276  Sum_probs=187.2

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||+|... ++..+|+|.+.......  ....+.+..|+++++.++|+||+++++++.+..  ..++|||
T Consensus         6 ~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~lv~e   81 (316)
T cd05574           6 IKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIK--RNKVKRVLTEQEILATLDHPFLPTLYASFQTET--YLCLVMD   81 (316)
T ss_pred             eeeecCCccEEEEEEEEcCCCcEEEEEEEeccccch--HHHHHHHHHHHHHHHhCCCCCchhheeeeecCC--EEEEEEE
Confidence            468999999999999975 48999999987543221  234567999999999999999999999998776  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      |+++++|.+++.......+++.....++.+++.||+|||+.+  ++||||||+||+++.++.++|+|||++......   
T Consensus        82 ~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~  159 (316)
T cd05574          82 YCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLLG--IVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPP  159 (316)
T ss_pred             ecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHCC--eeccCCChHHeEEcCCCCEEEeecchhhcccccccc
Confidence            999999999987555567999999999999999999999988  999999999999999999999999987654211   


Q ss_pred             -----------------------------------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCCh
Q 006019          531 -----------------------------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSL  575 (664)
Q Consensus       531 -----------------------------------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~  575 (664)
                                                         ...+.+||......++.++||||||+++|||++|+.||...+  .
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~--~  237 (316)
T cd05574         160 VSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSN--R  237 (316)
T ss_pred             cccccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCc--h
Confidence                                               112445666666667889999999999999999999994322  1


Q ss_pred             HHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          576 EDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       576 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      .+...........        ... ....+..+.+++.+||+.+|++||+++..++.
T Consensus       238 ~~~~~~~~~~~~~--------~~~-~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~  285 (316)
T cd05574         238 DETFSNILKKEVT--------FPG-SPPVSSSARDLIRKLLVKDPSKRLGSKRGAAE  285 (316)
T ss_pred             HHHHHHHhcCCcc--------CCC-ccccCHHHHHHHHHHccCCHhHCCCchhhHHH
Confidence            1211222211100        000 11134678999999999999999994433333

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=100.00  E-value=7.7e-33  Score=285.02  Aligned_cols=239  Identities=19%  Similarity=0.296  Sum_probs=182.9

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCC----Cce
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEE----PFT  447 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~----~~~  447 (664)
                      +.+.||+|+||.||+|+. .++..+|+|.+....      ....++..|+.+++++ +|+||+++++++....    ...
T Consensus        20 ~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~------~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~   93 (282)
T cd06636          20 LVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE------DEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQ   93 (282)
T ss_pred             hheeeccCCCeEEEEEEEcCCCcEEEEEEEecCh------HHHHHHHHHHHHHHHhcCCCcEEEEeeehhcccccCCCCE
Confidence            347899999999999996 457889999875432      2235688999999998 6999999999986421    125


Q ss_pred             eEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhh
Q 006019          448 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~  527 (664)
                      .+++|||+++|+|.+++.......+++..+..++.+++.|++|||+.+  ++||||||+||++++++.++|+|||+++..
T Consensus        94 ~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~--ivH~dl~~~nili~~~~~~~l~dfg~~~~~  171 (282)
T cd06636          94 LWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAHK--VIHRDIKGQNVLLTENAEVKLVDFGVSAQL  171 (282)
T ss_pred             EEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEECCCCCEEEeeCcchhhh
Confidence            799999999999999987555566889999999999999999999998  999999999999999999999999998755


Q ss_pred             hh---------hhhhcccccccC-----CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCcccc
Q 006019          528 AM---------AEMAATSKKLSS-----APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFV  593 (664)
Q Consensus       528 ~~---------~~~~~~~pe~~~-----~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (664)
                      ..         ....+.+||...     ...++.++|||||||++|||+||+.||.... .... .......       .
T Consensus       172 ~~~~~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~-~~~~-~~~~~~~-------~  242 (282)
T cd06636         172 DRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMH-PMRA-LFLIPRN-------P  242 (282)
T ss_pred             hccccCCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccccC-HHhh-hhhHhhC-------C
Confidence            32         122345677643     3457889999999999999999999984221 1111 1000000       0


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          594 DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       594 d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .+..  .....+..+.+++.+||+.||.+||++.|+++
T Consensus       243 ~~~~--~~~~~~~~~~~li~~cl~~~p~~Rp~~~ell~  278 (282)
T cd06636         243 PPKL--KSKKWSKKFIDFIEGCLVKNYLSRPSTEQLLK  278 (282)
T ss_pred             CCCC--cccccCHHHHHHHHHHhCCChhhCcCHHHHhc
Confidence            0111  11223457899999999999999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=100.00  E-value=1.1e-32  Score=293.73  Aligned_cols=247  Identities=17%  Similarity=0.262  Sum_probs=183.5

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC----ceeE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----FTRM  449 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~----~~~~  449 (664)
                      .+.||+|+||.||++... .+..+|||++......   ....+.+.+|+.+++.++||||+++++++.....    ...+
T Consensus        22 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~   98 (355)
T cd07874          22 LKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQN---QTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEEFQDVY   98 (355)
T ss_pred             EEEeeecCCEEEEEEEecCCCceEEEEEeCCcccC---hHHHHHHHHHHHHHHHhCCCchhceeeeeeccccccccceeE
Confidence            478999999999999854 5889999988643221   2345678899999999999999999999864321    2468


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                      +||||+++ +|.+.+.    ..+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....
T Consensus        99 lv~e~~~~-~l~~~~~----~~l~~~~~~~~~~qi~~aL~~LH~~g--ivHrDikp~Nill~~~~~~kl~Dfg~~~~~~~  171 (355)
T cd07874          99 LVMELMDA-NLCQVIQ----MELDHERMSYLLYQMLCGIKHLHSAG--IIHRDLKPSNIVVKSDCTLKILDFGLARTAGT  171 (355)
T ss_pred             EEhhhhcc-cHHHHHh----hcCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCChHHEEECCCCCEEEeeCcccccCCC
Confidence            99999975 6766664    24888899999999999999999998  99999999999999999999999999876532


Q ss_pred             h--------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHH---------------------H
Q 006019          530 A--------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWA---------------------A  580 (664)
Q Consensus       530 ~--------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~---------------------~  580 (664)
                      .        ...+.+||...+..++.++|||||||++|||++|+.||.... ....+.                     .
T Consensus       172 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (355)
T cd07874         172 SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRD-YIDQWNKVIEQLGTPCPEFMKKLQPTVR  250 (355)
T ss_pred             ccccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC-HHHHHHHHHHHhCCCCHHHHHhhcHHHH
Confidence            1        234567888777788999999999999999999999995322 111111                     0


Q ss_pred             HHhcCCCCCccccCCC-----C----CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          581 DYLSGVQPLQQFVDPT-----L----SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       581 ~~~~~~~~~~~~~d~~-----~----~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      .+............+.     .    ..........+.+++.+|++.||++|||+.|+++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rps~~ell~h  311 (355)
T cd07874         251 NYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQH  311 (355)
T ss_pred             HHHhcCCccccccchhhccccccccccccccccchHHHHHHHHHhcCCchhcCCHHHHhcC
Confidence            1110000000000000     0    01111224568899999999999999999999985

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-33  Score=294.70  Aligned_cols=235  Identities=21%  Similarity=0.302  Sum_probs=186.9

Q ss_pred             ccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEec
Q 006019          377 VIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYA  455 (664)
Q Consensus       377 ~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey~  455 (664)
                      +||+|.||+||-|+. .+...+|||.+......     ..+-..+|+.+.++++|.|||+++|.|.+++  ..-+.||.+
T Consensus       582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr-----~~QPLhEEIaLH~~LrHkNIVrYLGs~senG--f~kIFMEqV  654 (1226)
T KOG4279|consen  582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSR-----EVQPLHEEIALHSTLRHKNIVRYLGSVSENG--FFKIFMEQV  654 (1226)
T ss_pred             EeecCceeEEEeeccccceeEEEeeecccccch-----hhccHHHHHHHHHHHhhHhHHHHhhccCCCC--eEEEEeecC
Confidence            699999999999995 45678899988654432     3456789999999999999999999999887  668999999


Q ss_pred             CCCChhhhhcccCCCCC--CHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEec-CCCceEecccCchhhhhh---
Q 006019          456 PNGTLFEHIHIKESEHL--DWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT-EDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       456 ~~GsL~~~l~~~~~~~l--~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld-~~~~~kl~DfGla~~~~~---  529 (664)
                      |||+|.++|+.+ =+++  ...+.-.+..||++||.|||+..  |||||||-.|||++ -.|.+||+|||-++.+..   
T Consensus       655 PGGSLSsLLrsk-WGPlKDNEstm~fYtkQILeGLkYLHen~--IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAginP  731 (1226)
T KOG4279|consen  655 PGGSLSSLLRSK-WGPLKDNESTMNFYTKQILEGLKYLHENK--IVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINP  731 (1226)
T ss_pred             CCCcHHHHHHhc-cCCCccchhHHHHHHHHHHHHhhhhhhcc--eeeccccCCcEEEeeccceEEecccccchhhccCCc
Confidence            999999999754 2334  45666778899999999999999  99999999999998 568999999999887742   


Q ss_pred             ------hhhhcccccccCCC--CCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 006019          530 ------AEMAATSKKLSSAP--SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  601 (664)
Q Consensus       530 ------~~~~~~~pe~~~~~--~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  601 (664)
                            ++..+++||....+  .|..++|||||||.+.||.||++||..-+......++     .+ +    =...++.|
T Consensus       732 ~TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~ElgspqAAMFk-----VG-m----yKvHP~iP  801 (1226)
T KOG4279|consen  732 CTETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQAAMFK-----VG-M----YKVHPPIP  801 (1226)
T ss_pred             cccccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCChhHhhhh-----hc-c----eecCCCCc
Confidence                  34566778876433  3788999999999999999999999432221111111     00 0    01223567


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          602 EEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       602 ~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ++...+...++.+|+..||.+||+++++++
T Consensus       802 eelsaeak~FilrcFepd~~~R~sA~~LL~  831 (1226)
T KOG4279|consen  802 EELSAEAKNFILRCFEPDPCDRPSAKDLLQ  831 (1226)
T ss_pred             HHHHHHHHHHHHHHcCCCcccCccHHHhcc
Confidence            888889999999999999999999998875

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=100.00  E-value=2.1e-32  Score=281.09  Aligned_cols=234  Identities=21%  Similarity=0.249  Sum_probs=182.4

Q ss_pred             cccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEecC
Q 006019          378 IGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAP  456 (664)
Q Consensus       378 iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey~~  456 (664)
                      ||+|+||.||++... +|..+++|.+.......  ....+.+..|++++++++||||+++++++...+  ..++|+||++
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~lv~e~~~   76 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKK--RKGEQMALNEKKILEKVSSRFIVSLAYAFETKD--DLCLVMTLMN   76 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhh--hhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCC--eEEEEEecCC
Confidence            699999999999854 68899999886533221  223456788999999999999999999998776  6799999999


Q ss_pred             CCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh------
Q 006019          457 NGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA------  530 (664)
Q Consensus       457 ~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~------  530 (664)
                      +++|.+++.......+++..+..++.+++.|+.|||+++  ++||||+|+||++++++.+||+|||++......      
T Consensus        77 ~~~L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~--i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~  154 (277)
T cd05577          77 GGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRR--IVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKKIKGR  154 (277)
T ss_pred             CCcHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHHEEECCCCCEEEccCcchhhhccCCccccc
Confidence            999999987555457899999999999999999999998  999999999999999999999999998765321      


Q ss_pred             --hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCC--ChHHHHHHHhcCCCCCccccCCCCCCCCHHHHH
Q 006019          531 --EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG--SLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE  606 (664)
Q Consensus       531 --~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  606 (664)
                        ...+.+||......++.++|||||||+++||++|+.||.....  ...+.......           .....+.....
T Consensus       155 ~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~  223 (277)
T cd05577         155 AGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKEELKRRTLE-----------MAVEYPDKFSP  223 (277)
T ss_pred             cCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCcccccHHHHHhcccc-----------ccccCCccCCH
Confidence              1234567877666788999999999999999999999953221  11111111110           00111222345


Q ss_pred             HHHHHHHHhccCCCCCCCCHHH
Q 006019          607 TLGELIKSCVRADPEKRPTMRD  628 (664)
Q Consensus       607 ~l~~l~~~Cl~~~P~~RPs~~e  628 (664)
                      .+.+++.+||+.+|++||++++
T Consensus       224 ~~~~li~~~l~~~p~~R~~~~~  245 (277)
T cd05577         224 EAKDLCEALLQKDPEKRLGCRG  245 (277)
T ss_pred             HHHHHHHHHccCChhHccCCCc
Confidence            6889999999999999995444

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=100.00  E-value=1.2e-32  Score=285.32  Aligned_cols=235  Identities=17%  Similarity=0.289  Sum_probs=185.3

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      ..||+|+||.||++... ++..+|||.+....     ....+.+.+|+.++++++|+||+++++++...+  ..++||||
T Consensus        28 ~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~-----~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~--~~~lv~e~  100 (292)
T cd06658          28 IKIGEGSTGIVCIATEKHTGKQVAVKKMDLRK-----QQRRELLFNEVVIMRDYHHENVVDMYNSYLVGD--ELWVVMEF  100 (292)
T ss_pred             hcccCCCCeEEEEEEECCCCCEEEEEEEecch-----HHHHHHHHHHHHHHHhCCCCcHHHHHHheecCC--eEEEEEeC
Confidence            46999999999999864 58899999875432     223467899999999999999999999998776  67999999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh-----
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM-----  529 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~-----  529 (664)
                      +++++|.+++..   ..+++.....++.+++.|++|||+.+  ++||||||+||++++++.+||+|||++.....     
T Consensus       101 ~~~~~L~~~~~~---~~l~~~~~~~~~~qi~~~l~~LH~~~--ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~~~  175 (292)
T cd06658         101 LEGGALTDIVTH---TRMNEEQIATVCLSVLRALSYLHNQG--VIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKR  175 (292)
T ss_pred             CCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC--EeecCCCHHHEEEcCCCCEEEccCcchhhcccccccC
Confidence            999999998742   35889999999999999999999998  99999999999999999999999999875421     


Q ss_pred             ----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 006019          530 ----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  605 (664)
Q Consensus       530 ----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  605 (664)
                          ....+.+||......++.++|||||||++|||++|+.||....  ..+........       ..+.... .....
T Consensus       176 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~--~~~~~~~~~~~-------~~~~~~~-~~~~~  245 (292)
T cd06658         176 KSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEP--PLQAMRRIRDN-------LPPRVKD-SHKVS  245 (292)
T ss_pred             ceeecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHhc-------CCCcccc-ccccC
Confidence                1224557887777778899999999999999999999984322  11111111111       1111110 11223


Q ss_pred             HHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          606 ETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       606 ~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      ..+.+++.+||+.||++||+++++++.
T Consensus       246 ~~~~~li~~~l~~~P~~Rpt~~~il~~  272 (292)
T cd06658         246 SVLRGFLDLMLVREPSQRATAQELLQH  272 (292)
T ss_pred             HHHHHHHHHHccCChhHCcCHHHHhhC
Confidence            468899999999999999999999874

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-32  Score=292.24  Aligned_cols=231  Identities=19%  Similarity=0.250  Sum_probs=189.3

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      |..+||+|.||+|+.+.++ ++..+|||++++...-.  .+..+..+.|.+++... +||.++.|++++...+  +.+.|
T Consensus       372 ~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~--~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~--~l~fv  447 (694)
T KOG0694|consen  372 LLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQ--RDEVESLMCEKRIFELANRHPFLVNLFSCFQTKE--HLFFV  447 (694)
T ss_pred             EEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceec--cccHHHHHHHHHHHHHhccCCeEeecccccccCC--eEEEE
Confidence            3489999999999999976 57899999998655332  33456677888887766 5999999999998887  78999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh--
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM--  529 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~--  529 (664)
                      |||+.+|++..+.   ....++.....-+|..|+.||.|||+++  ||+||||-.|||||.+|.+||+|||++|....  
T Consensus       448 mey~~Ggdm~~~~---~~~~F~e~rarfyaAev~l~L~fLH~~~--IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m~~g  522 (694)
T KOG0694|consen  448 MEYVAGGDLMHHI---HTDVFSEPRARFYAAEVVLGLQFLHENG--IIYRDLKLDNLLLDTEGHVKIADFGLCKEGMGQG  522 (694)
T ss_pred             EEecCCCcEEEEE---ecccccHHHHHHHHHHHHHHHHHHHhcC--ceeeecchhheEEcccCcEEecccccccccCCCC
Confidence            9999999965554   3567999999999999999999999999  99999999999999999999999999997641  


Q ss_pred             -------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          530 -------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       530 -------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                             ++..+.+||......|+...|.|||||+||||++|+.||.++  +-.+....++.+.           ..+|.
T Consensus       523 ~~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gd--dEee~FdsI~~d~-----------~~yP~  589 (694)
T KOG0694|consen  523 DRTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGD--DEEEVFDSIVNDE-----------VRYPR  589 (694)
T ss_pred             CccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCC--CHHHHHHHHhcCC-----------CCCCC
Confidence                   123445788889999999999999999999999999999533  3344444444431           12445


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCH
Q 006019          603 EQLETLGELIKSCVRADPEKRPTM  626 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~  626 (664)
                      ....+..+++.+.+.++|++|..+
T Consensus       590 ~ls~ea~~il~~ll~k~p~kRLG~  613 (694)
T KOG0694|consen  590 FLSKEAIAIMRRLLRKNPEKRLGS  613 (694)
T ss_pred             cccHHHHHHHHHHhccCcccccCC
Confidence            556788999999999999999866

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-33  Score=276.89  Aligned_cols=252  Identities=18%  Similarity=0.231  Sum_probs=185.2

Q ss_pred             cccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEec---CCCceeEEE
Q 006019          376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEE---EEPFTRMMV  451 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~---~~~~~~~lV  451 (664)
                      +.||+|+||.|+++.. .+|..||||++...-..   ....++-.+|+++|+.++|+||+.+..+...   ++-...|+|
T Consensus        28 ~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~---~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~DvYiV  104 (359)
T KOG0660|consen   28 EPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFEN---QIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFNDVYLV  104 (359)
T ss_pred             ccccCcceeeEEEEEEcCCCCEeehhhhhhhhhc---hHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccceeEEe
Confidence            5699999999999995 46899999998633222   2346778899999999999999999998865   222257999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh--
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM--  529 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~--  529 (664)
                      +|+|+ -+|...++  ....|+......+..|+++||.|+|+.+  |+||||||+|+|++.+...||+|||+|+....  
T Consensus       105 ~elMe-tDL~~iik--~~~~L~d~H~q~f~YQiLrgLKyiHSAn--ViHRDLKPsNll~n~~c~lKI~DFGLAR~~~~~~  179 (359)
T KOG0660|consen  105 FELME-TDLHQIIK--SQQDLTDDHAQYFLYQILRGLKYIHSAN--VIHRDLKPSNLLLNADCDLKICDFGLARYLDKFF  179 (359)
T ss_pred             hhHHh-hHHHHHHH--cCccccHHHHHHHHHHHHHhcchhhccc--ccccccchhheeeccCCCEEeccccceeeccccC
Confidence            99995 48988886  3445888899999999999999999999  99999999999999999999999999998842  


Q ss_pred             --hh-h------hccccccc-CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHH--H------------------
Q 006019          530 --AE-M------AATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDW--A------------------  579 (664)
Q Consensus       530 --~~-~------~~~~pe~~-~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~--~------------------  579 (664)
                        .. .      .+.+||.. ....+|...||||.||++.||++|+.-|.+.+ .+.+.  +                  
T Consensus       180 ~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d-~v~Ql~lI~~~lGtP~~e~l~~i~s~  258 (359)
T KOG0660|consen  180 EDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKD-YVHQLQLILELLGTPSEEDLQKIRSE  258 (359)
T ss_pred             cccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCc-hHHHHHHHHHhcCCCCHHHHHHhccH
Confidence              11 1      22345443 34568999999999999999999998885332 11111  1                  


Q ss_pred             --HHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH--HHhhhCC
Q 006019          580 --ADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI--LREITGI  639 (664)
Q Consensus       580 --~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~--L~~i~~~  639 (664)
                        +.++...   ...-...+...-+.......+|+.+++..||.+|+|++|.++.  |...-..
T Consensus       259 ~ar~yi~sl---p~~p~~~f~~~fp~a~p~AidLlekmL~fdP~kRita~eAL~hPYl~~~hdp  319 (359)
T KOG0660|consen  259 KARPYIKSL---PQIPKQPFSSIFPNANPLAIDLLEKMLVFDPKKRITAEEALAHPYLAPYHDP  319 (359)
T ss_pred             HHHHHHHhC---CCCCCCCHHHHcCCCCHHHHHHHHHHhccCccccCCHHHHhcChhhhhhcCC
Confidence              1111110   0000000011112334567899999999999999999998763  4444333

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=100.00  E-value=2e-32  Score=283.69  Aligned_cols=249  Identities=17%  Similarity=0.199  Sum_probs=184.5

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|... ++..+++|.+.......   .....+.+|++++++++||||+++++++...+....++||
T Consensus         9 ~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~---~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv~   85 (293)
T cd07843           9 KLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKE---GFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMVM   85 (293)
T ss_pred             hhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccc---cchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEEe
Confidence            3478999999999999976 58889999987544321   2334678899999999999999999998876323789999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||++ ++|.+++... ...+++.....++.+++.||+|||+++  ++||||||+||+++.++.+||+|||+++.....  
T Consensus        86 e~~~-~~L~~~~~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~~--i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~  161 (293)
T cd07843          86 EYVE-HDLKSLMETM-KQPFLQSEVKCLMLQLLSGVAHLHDNW--ILHRDLKTSNLLLNNRGILKICDFGLAREYGSPLK  161 (293)
T ss_pred             hhcC-cCHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHCC--eeeccCCHHHEEECCCCcEEEeecCceeeccCCcc
Confidence            9997 5998888643 336899999999999999999999998  999999999999999999999999988765332  


Q ss_pred             -------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCC---------------
Q 006019          531 -------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ---------------  587 (664)
Q Consensus       531 -------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~---------------  587 (664)
                             ...+.+||.... ...+.++|+||||+++|||++|+.||....  ..+..........               
T Consensus       162 ~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (293)
T cd07843         162 PYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKS--EIDQLNKIFKLLGTPTEKIWPGFSELPG  239 (293)
T ss_pred             ccccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHHHhCCCchHHHHHhhccch
Confidence                   122456776543 346889999999999999999999984321  1111111110000               


Q ss_pred             ----CCccccCCCC-CCCCHH-HHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          588 ----PLQQFVDPTL-SSFDEE-QLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       588 ----~~~~~~d~~~-~~~~~~-~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                          .........+ ..++.. ....+.+++.+||+.+|++||++.|+++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~t~~ell~  289 (293)
T cd07843         240 AKKKTFTKYPYNQLRKKFPALSLSDNGFDLLNRLLTYDPAKRISAEDALK  289 (293)
T ss_pred             hcccccccccchhhhccccccCCChHHHHHHHHHhccCccccCCHHHHhc
Confidence                0000000000 011111 2456889999999999999999999875

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=100.00  E-value=1.1e-32  Score=290.65  Aligned_cols=244  Identities=17%  Similarity=0.225  Sum_probs=184.1

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+++.. +++.+|+|.+.......  ......+.+|+.++..++|+||+++++++.+.+  ..++||
T Consensus         5 i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~--~~~lv~   80 (331)
T cd05624           5 IIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLK--RAETACFREERNVLVNGDCQWITTLHYAFQDEN--YLYLVM   80 (331)
T ss_pred             EEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHh--hHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC--EEEEEE
Confidence            3478999999999999965 57889999886432111  223456889999999999999999999998777  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++|+|.++++.. ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....   
T Consensus        81 Ey~~gg~L~~~l~~~-~~~l~~~~~~~~~~qi~~~L~~lH~~~--iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~  157 (331)
T cd05624          81 DYYVGGDLLTLLSKF-EDRLPEDMARFYIAEMVLAIHSIHQLH--YVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGT  157 (331)
T ss_pred             eCCCCCcHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCC--eeeccCchHHEEEcCCCCEEEEeccceeeccCCCc
Confidence            999999999999642 346889999999999999999999998  99999999999999999999999999875432   


Q ss_pred             -------hhhhcccccccCC-----CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 006019          530 -------AEMAATSKKLSSA-----PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  597 (664)
Q Consensus       530 -------~~~~~~~pe~~~~-----~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  597 (664)
                             ....+.+||....     ..++.++|||||||++|||+||+.||..  .+..+.............  .....
T Consensus       158 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~--~~~~~~~~~i~~~~~~~~--~p~~~  233 (331)
T cd05624         158 VQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYA--ESLVETYGKIMNHEERFQ--FPSHI  233 (331)
T ss_pred             eeeccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccC--CCHHHHHHHHHcCCCccc--CCCcc
Confidence                   1234556776543     4578899999999999999999999943  233333333332211110  11111


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCC--CCCHHHHHHH
Q 006019          598 SSFDEEQLETLGELIKSCVRADPEK--RPTMRDIAAI  632 (664)
Q Consensus       598 ~~~~~~~~~~l~~l~~~Cl~~~P~~--RPs~~ev~~~  632 (664)
                          ...++++.+++.+|+..++++  |++++++.+.
T Consensus       234 ----~~~~~~~~~li~~ll~~~~~~~~~~~~~~~~~h  266 (331)
T cd05624         234 ----TDVSEEAKDLIQRLICSRERRLGQNGIEDFKKH  266 (331)
T ss_pred             ----ccCCHHHHHHHHHHccCchhhcCCCCHHHHhcC
Confidence                123456889999998865544  4678777653

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=100.00  E-value=3.9e-32  Score=280.40  Aligned_cols=234  Identities=19%  Similarity=0.287  Sum_probs=186.9

Q ss_pred             cccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      +.||+|++|.||+|.. .++..+++|++....     ....+.+.+|+.+++.++|+||+++++++...+  ..++|+||
T Consensus        25 ~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~-----~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~--~~~~v~e~   97 (285)
T cd06648          25 VKIGEGSTGIVCIATDKSTGRQVAVKKMDLRK-----QQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGD--ELWVVMEF   97 (285)
T ss_pred             eEeccCCCeEEEEEEECCCCCEEEEEEEeccc-----hhHHHHHHHHHHHHHHcCCCChheEEEEEEcCC--eEEEEEec
Confidence            6899999999999996 468889999875432     123456889999999999999999999988766  67999999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh-----
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM-----  529 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~-----  529 (664)
                      +++++|.+++..   ..+++..+..++.+++.|++|||+.+  ++||||+|+||+++.++.++++|||++.....     
T Consensus        98 ~~~~~L~~~~~~---~~~~~~~~~~~~~ql~~~l~~lH~~~--i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~~~  172 (285)
T cd06648          98 LEGGALTDIVTH---TRMNEEQIATVCLAVLKALSFLHAQG--VIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPRR  172 (285)
T ss_pred             cCCCCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCChhhEEEcCCCcEEEcccccchhhccCCccc
Confidence            999999999864   46899999999999999999999998  99999999999999999999999998765422     


Q ss_pred             ----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 006019          530 ----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  605 (664)
Q Consensus       530 ----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  605 (664)
                          ....+.+||......++.++|||||||++|||++|+.||..  ....+..........       +.. .......
T Consensus       173 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~--~~~~~~~~~~~~~~~-------~~~-~~~~~~~  242 (285)
T cd06648         173 KSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFN--EPPLQAMKRIRDNLP-------PKL-KNLHKVS  242 (285)
T ss_pred             ccccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcC--CCHHHHHHHHHhcCC-------CCC-cccccCC
Confidence                12235567877777789999999999999999999999843  222333332222210       111 0111233


Q ss_pred             HHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          606 ETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       606 ~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ..+.+++.+||+.+|++||++.++++
T Consensus       243 ~~l~~li~~~l~~~p~~Rpt~~~il~  268 (285)
T cd06648         243 PRLRSFLDRMLVRDPAQRATAAELLN  268 (285)
T ss_pred             HHHHHHHHHHcccChhhCcCHHHHcc
Confidence            56899999999999999999998886

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=100.00  E-value=1.1e-32  Score=279.80  Aligned_cols=236  Identities=17%  Similarity=0.199  Sum_probs=187.9

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||.|+||.||+|+.. ++..+++|.+.......  ....+.+.+|++++++++||||+++++++.+..  ..++|+
T Consensus         4 ~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   79 (258)
T cd05578           4 LLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVE--KGSVRNVLNERRILQELNHPFLVNLWYSFQDEE--NMYLVV   79 (258)
T ss_pred             EEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcc--hhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCC--eEEEEE
Confidence            4578999999999999975 58899999987543221  234578999999999999999999999988766  789999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++++|.+++...  ..+++.....++.+++.||+|||+.+  ++|+||+|+||++++++.++|+|||++......  
T Consensus        80 e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~i~~~l~~lh~~~--i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~  155 (258)
T cd05578          80 DLLLGGDLRYHLSQK--VKFSEEQVKFWICEIVLALEYLHSKG--IIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTL  155 (258)
T ss_pred             eCCCCCCHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHhCC--eeccCCCHHHeEEcCCCCEEEeecccccccCCCcc
Confidence            999999999998633  57899999999999999999999998  999999999999999999999999988765322  


Q ss_pred             ------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          531 ------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       531 ------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                            ...+.+||.......+.++||||||+++|||++|+.||........++.......   ..       ...+...
T Consensus       156 ~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~---~~-------~~~~~~~  225 (258)
T cd05578         156 TTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIRDQIRAKQET---AD-------VLYPATW  225 (258)
T ss_pred             ccccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCccHHHHHHHHhcc---cc-------ccCcccC
Confidence                  2234567777666789999999999999999999999964333222322222211   00       1122233


Q ss_pred             HHHHHHHHHHhccCCCCCCCCHH
Q 006019          605 LETLGELIKSCVRADPEKRPTMR  627 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RPs~~  627 (664)
                      +..+.+++.+||+.||.+||++.
T Consensus       226 ~~~~~~~i~~~l~~~p~~R~~~~  248 (258)
T cd05578         226 STEAIDAINKLLERDPQKRLGDN  248 (258)
T ss_pred             cHHHHHHHHHHccCChhHcCCcc
Confidence            46788999999999999999993

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=100.00  E-value=1.4e-32  Score=279.57  Aligned_cols=238  Identities=21%  Similarity=0.253  Sum_probs=186.8

Q ss_pred             cccCCCeEEEEEEECC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEecC
Q 006019          378 IGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAP  456 (664)
Q Consensus       378 iG~G~~G~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey~~  456 (664)
                      ||+|+||.||+++..+ |..+++|.+.......  ....+.+.+|++++++++|+||+++++++....  ..++++||++
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~--~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~--~~~lv~e~~~   76 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIR--KNQVDQVLTERDILSQAQSPYVVKLYYSFQGKK--NLYLVMEYLP   76 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhh--hhHHHHHHHHHHHHHhCCCcchhHHHHheecCc--EEEEEEecCC
Confidence            6899999999999864 8999999886443211  234567999999999999999999999988766  6799999999


Q ss_pred             CCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh------
Q 006019          457 NGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA------  530 (664)
Q Consensus       457 ~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~------  530 (664)
                      +++|.++++..  ..+++..+..++.+++.||+|||+.+  ++||||+|+||++++++.+||+|||++......      
T Consensus        77 ~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~L~~lH~~~--i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~  152 (265)
T cd05579          77 GGDLASLLENV--GSLDEDVARIYIAEIVLALEYLHSNG--IIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLN  152 (265)
T ss_pred             CCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHcC--eecCCCCHHHeEEcCCCCEEEEecccchhcccCcccccc
Confidence            99999998632  36899999999999999999999998  999999999999999999999999987754322      


Q ss_pred             -----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 006019          531 -----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  599 (664)
Q Consensus       531 -----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  599 (664)
                                 ...+.+||.......+.++||||||+++||++||+.||..  ....+.......+....     +... 
T Consensus       153 ~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~--~~~~~~~~~~~~~~~~~-----~~~~-  224 (265)
T cd05579         153 DDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHG--ETPEEIFQNILNGKIEW-----PEDV-  224 (265)
T ss_pred             cccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHhcCCcCC-----Cccc-
Confidence                       1123456666666678899999999999999999999943  23333333332211110     0000 


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 006019          600 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR  634 (664)
Q Consensus       600 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~  634 (664)
                         ..+..+.+++.+||+.+|++||++.++.+.|+
T Consensus       225 ---~~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~l~  256 (265)
T cd05579         225 ---EVSDEAIDLISKLLVPDPEKRLGAKSIEEIKN  256 (265)
T ss_pred             ---cCCHHHHHHHHHHhcCCHhhcCCCccHHHHhc
Confidence               02456889999999999999999966666554

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>PHA03209 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=6.1e-33  Score=295.65  Aligned_cols=179  Identities=14%  Similarity=0.156  Sum_probs=150.2

Q ss_pred             hhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      .+.+.||+|+||.||+|+.. ++..||+|....           .....|+.++++++|+||+++++++...+  ..++|
T Consensus        69 ~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~-----------~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv  135 (357)
T PHA03209         69 TVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQK-----------GTTLIEAMLLQNVNHPSVIRMKDTLVSGA--ITCMV  135 (357)
T ss_pred             EEEEEecCCCCeEEEEEEECCCCceEEEEeCCc-----------cccHHHHHHHHhCCCCCCcChhheEEeCC--eeEEE
Confidence            34478999999999999975 467888886421           12356899999999999999999998876  67999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh--
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM--  529 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~--  529 (664)
                      +||+. |+|.+++.. ....+++..+.+|+.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....  
T Consensus       136 ~e~~~-~~l~~~l~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~  211 (357)
T PHA03209        136 LPHYS-SDLYTYLTK-RSRPLPIDQALIIEKQILEGLRYLHAQR--IIHRDVKTENIFINDVDQVCIGDLGAAQFPVVAP  211 (357)
T ss_pred             EEccC-CcHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEECCCCCEEEecCccccccccCc
Confidence            99995 689888853 3457899999999999999999999998  99999999999999999999999999874321  


Q ss_pred             ------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCc
Q 006019          530 ------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPY  568 (664)
Q Consensus       530 ------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~  568 (664)
                            ....+.+||......++.++|||||||++|||+++..|+
T Consensus       212 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~  256 (357)
T PHA03209        212 AFLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTI  256 (357)
T ss_pred             ccccccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCcc
Confidence                  223456788888888899999999999999999965554

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=100.00  E-value=9.4e-32  Score=281.93  Aligned_cols=245  Identities=18%  Similarity=0.239  Sum_probs=188.9

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||+|+.. ++..+|+|.+......  ......++.+|++++++++|+|++++++++.+.+  ..++|||
T Consensus        30 ~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~e  105 (317)
T cd06635          30 LREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQ--SNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREH--TAWLVME  105 (317)
T ss_pred             hheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCC--chHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCC--eEEEEEe
Confidence            467999999999999964 6889999988643222  2334567999999999999999999999998876  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      |++ |+|.+.+.. ....++|.++..++.+++.|+.|||+.+  ++||||+|+||+++.++.+||+|||++......   
T Consensus       106 ~~~-g~l~~~~~~-~~~~l~~~~~~~i~~~i~~~l~~lH~~~--i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~  181 (317)
T cd06635         106 YCL-GSASDLLEV-HKKPLQEVEIAAITHGALQGLAYLHSHN--MIHRDIKAGNILLTEPGQVKLADFGSASIASPANSF  181 (317)
T ss_pred             CCC-CCHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCcccEEECCCCCEEEecCCCccccCCcccc
Confidence            997 588777643 3456899999999999999999999998  999999999999999999999999987755322   


Q ss_pred             --hhhccccccc---CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 006019          531 --EMAATSKKLS---SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  605 (664)
Q Consensus       531 --~~~~~~pe~~---~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  605 (664)
                        ...+.+||+.   ....++.++|||||||++|||++|+.||...  ...............       .  .......
T Consensus       182 ~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~--~~~~~~~~~~~~~~~-------~--~~~~~~~  250 (317)
T cd06635         182 VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM--NAMSALYHIAQNESP-------T--LQSNEWS  250 (317)
T ss_pred             cCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCc--cHHHHHHHHHhccCC-------C--CCCcccc
Confidence              2235567765   2356788999999999999999999998432  112222222221110       0  0112234


Q ss_pred             HHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          606 ETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       606 ~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      ..+.+++.+||+.+|++||++.++++.+-.+..
T Consensus       251 ~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~~  283 (317)
T cd06635         251 DYFRNFVDSCLQKIPQDRPTSEELLKHMFVLRE  283 (317)
T ss_pred             HHHHHHHHHHccCCcccCcCHHHHHhChhhhcc
Confidence            568899999999999999999999987665443

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=100.00  E-value=1.4e-32  Score=283.15  Aligned_cols=248  Identities=18%  Similarity=0.241  Sum_probs=186.0

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||.|++|.||+|... +|..+++|++......   ......+.+|++++++++|+|++++++++.+.+  ..+++|
T Consensus         3 ~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~--~~~iv~   77 (283)
T cd07835           3 KVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETED---EGVPSTAIREISLLKELNHPNIVRLLDVVHSEN--KLYLVF   77 (283)
T ss_pred             hheEecCCCCeEEEEEEEcCCCCEEEEEEeeccccc---ccchhHHHHHHHHHHhcCCCCccCHhheeccCC--eEEEEE
Confidence            3468999999999999964 6899999988754322   123356889999999999999999999998776  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||++ ++|.+++.......+++..+.+++.++++||+|||+.+  ++||||+|+||+++.++.+||+|||+++.....  
T Consensus        78 e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~~--~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~~  154 (283)
T cd07835          78 EFLD-LDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSHR--VLHRDLKPQNLLIDREGALKLADFGLARAFGVPVR  154 (283)
T ss_pred             eccC-cCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeCCCCCHHHEEEcCCCcEEEeecccccccCCCcc
Confidence            9995 69999886544457899999999999999999999988  999999999999999999999999998754311  


Q ss_pred             -------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCC--------------
Q 006019          531 -------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP--------------  588 (664)
Q Consensus       531 -------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~--------------  588 (664)
                             ...+.+||.... ..++.++|||||||++|||+||+.||..... ..+ ..........              
T Consensus       155 ~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~  232 (283)
T cd07835         155 TYTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSE-IDQ-LFRIFRTLGTPDEDVWPGVTSLPD  232 (283)
T ss_pred             ccCccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCH-HHH-HHHHHHHhCCCChHHhhhhhhchh
Confidence                   223456776543 3468899999999999999999999853221 111 1111110000              


Q ss_pred             ----CccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          589 ----LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       589 ----~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                          .............+.....+.+++.+||+.+|++||+++|+++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~  279 (283)
T cd07835         233 YKPTFPKWARQDLSKVVPNLDEDGLDLLSKMLVYDPAKRISAKAALQ  279 (283)
T ss_pred             hhhhcccccccchhhhcCCCCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence                0000001111111223356889999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=2.6e-32  Score=289.44  Aligned_cols=247  Identities=15%  Similarity=0.170  Sum_probs=180.9

Q ss_pred             hcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC----ceeE
Q 006019          375 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----FTRM  449 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~----~~~~  449 (664)
                      .+.||+|+||.||+|.. .++..||||++......   ....+.+.+|++++++++|+||+++++++.....    ...+
T Consensus        20 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~   96 (343)
T cd07878          20 LTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQS---LIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIENFNEVY   96 (343)
T ss_pred             heecccCCCeEEEEEEECCCCCEEEEEEeCchhhh---hHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccccccCcEE
Confidence            47899999999999985 46789999988643211   1234567899999999999999999998754321    2468


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                      +++||+ +++|.+++.   ...+++.....++.|++.||+|||+.+  |+||||||+|||+++++.+||+|||+++....
T Consensus        97 ~~~~~~-~~~l~~~~~---~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~  170 (343)
T cd07878          97 LVTNLM-GADLNNIVK---CQKLSDEHVQFLIYQLLRGLKYIHSAG--IIHRDLKPSNVAVNEDCELRILDFGLARQADD  170 (343)
T ss_pred             EEeecC-CCCHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHCC--eecccCChhhEEECCCCCEEEcCCccceecCC
Confidence            999988 779988774   346899999999999999999999998  99999999999999999999999999876532


Q ss_pred             h------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCC-CCCcccc--------
Q 006019          530 A------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV-QPLQQFV--------  593 (664)
Q Consensus       530 ~------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~-~~~~~~~--------  593 (664)
                      .      ...+.+||.... ..++.++|||||||++|||++|+.||....  ..+......... .......        
T Consensus       171 ~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (343)
T cd07878         171 EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGND--YIDQLKRIMEVVGTPSPEVLKKISSEHA  248 (343)
T ss_pred             CcCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCCC--HHHHHHHHHHHhCCCCHHHHHhcchhhH
Confidence            2      234567776654 467889999999999999999999994322  111111111000 0000000        


Q ss_pred             ---CCCCCCCC--------HHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          594 ---DPTLSSFD--------EEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       594 ---d~~~~~~~--------~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                         ...+...+        ......+.+++.+|++.||++|||+.|+++.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s~~ell~h  298 (343)
T cd07878         249 RKYIQSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISASEALAH  298 (343)
T ss_pred             HHHhhccccccchhHHHhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence               00000001        0112347799999999999999999999854

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.5e-32  Score=275.36  Aligned_cols=242  Identities=17%  Similarity=0.226  Sum_probs=187.1

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|... ++..+++|.+...............|.+|++++++++|+||+++++++.+......++++
T Consensus         6 ~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~v~   85 (264)
T cd06653           6 LGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKLSIFV   85 (264)
T ss_pred             eeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEEEEEE
Confidence            4578999999999999964 588999998754322222233456899999999999999999999998765433578999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++++|.+++..  ...+++....+++.+++.|+.|||+++  ++|+||||+||+++.++.++|+|||+++....   
T Consensus        86 e~~~~~~L~~~~~~--~~~l~~~~~~~~~~~i~~al~~LH~~~--i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~  161 (264)
T cd06653          86 EYMPGGSIKDQLKA--YGALTENVTRRYTRQILQGVSYLHSNM--IVHRDIKGANILRDSAGNVKLGDFGASKRIQTICM  161 (264)
T ss_pred             EeCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHhCC--EecCCCCHHHEEEcCCCCEEECccccccccccccc
Confidence            99999999998863  235889999999999999999999998  99999999999999999999999999875421   


Q ss_pred             ---------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 006019          530 ---------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  600 (664)
Q Consensus       530 ---------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  600 (664)
                               ....+.+||+......+.++|||||||++|||+||+.||...  ...+-+......  .       .....
T Consensus       162 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~--~~~~~~~~~~~~--~-------~~~~~  230 (264)
T cd06653         162 SGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEY--EAMAAIFKIATQ--P-------TKPML  230 (264)
T ss_pred             cCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCcc--CHHHHHHHHHcC--C-------CCCCC
Confidence                     122345678777777889999999999999999999999422  111111111111  0       11122


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          601 DEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       601 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      +....+.+.+++.+||+ +|..||+..+++.
T Consensus       231 p~~~~~~~~~~i~~~l~-~~~~r~~~~~~~~  260 (264)
T cd06653         231 PDGVSDACRDFLKQIFV-EEKRRPTAEFLLR  260 (264)
T ss_pred             CcccCHHHHHHHHHHhc-CcccCccHHHHhc
Confidence            33444678999999998 5799999997764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=100.00  E-value=5.2e-33  Score=286.52  Aligned_cols=248  Identities=16%  Similarity=0.221  Sum_probs=183.9

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. +|..+++|.+......   ......+.+|++++++++|+||+++++++.+..  ..++|+
T Consensus         4 ~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~---~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   78 (284)
T cd07839           4 KLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDD---EGVPSSALREICLLKELKHKNIVRLYDVLHSDK--KLTLVF   78 (284)
T ss_pred             eEEEecccCCeEEEEEEECCCCcEEEEEEeeccccc---ccCccchhHHHHHHHhcCCCCeeeHHHHhccCC--ceEEEE
Confidence            4478999999999999975 6889999988654322   123356788999999999999999999998776  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||++ ++|.+++... ...+++.....++.++++||+|||+.+  ++||||||+||+++.++.+||+|||+++.....  
T Consensus        79 e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~al~~LH~~~--i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~  154 (284)
T cd07839          79 EYCD-QDLKKYFDSC-NGDIDPEIVKSFMFQLLKGLAFCHSHN--VLHRDLKPQNLLINKNGELKLADFGLARAFGIPVR  154 (284)
T ss_pred             ecCC-CCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCC--EecCCCCHHHEEEcCCCcEEECccchhhccCCCCC
Confidence            9997 5888877532 356899999999999999999999998  999999999999999999999999998765321  


Q ss_pred             -------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcC--------------CCC
Q 006019          531 -------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG--------------VQP  588 (664)
Q Consensus       531 -------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~--------------~~~  588 (664)
                             ...+.+||...+ ..++.++|||||||++|||+||+.|+..... ..+........              ...
T Consensus       155 ~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (284)
T cd07839         155 CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGND-VDDQLKRIFRLLGTPTEESWPGVSKLPD  233 (284)
T ss_pred             CcCCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCC-HHHHHHHHHHHhCCCChHHhHHhhhccc
Confidence                   223456776544 3468899999999999999999998643222 12211111100              000


Q ss_pred             Cccc--cCCCC--CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          589 LQQF--VDPTL--SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       589 ~~~~--~d~~~--~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ....  .....  .........++.+++.+||+.||++|||+.++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~il~  280 (284)
T cd07839         234 YKPYPMYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQ  280 (284)
T ss_pred             ccccCCCCCcchhhhhcccCCHHHHHHHHHHhcCChhhcCCHHHHhc
Confidence            0000  00000  0011223467889999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=100.00  E-value=2.3e-32  Score=282.04  Aligned_cols=240  Identities=19%  Similarity=0.291  Sum_probs=180.5

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCC---CceeE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEE---PFTRM  449 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~---~~~~~  449 (664)
                      .+.||+|+||.||++... ++..+|+|.+....      ....++.+|+.+++++ +|+||+++++++....   ....+
T Consensus        23 ~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~------~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~   96 (286)
T cd06638          23 IETIGKGTYGKVFKVLNKKNGSKAAVKILDPIH------DIDEEIEAEYNILKALSDHPNVVKFYGMYYKKDVKNGDQLW   96 (286)
T ss_pred             eeeeccCCCcEEEEEEECCCCceeEEEeecccc------chHHHHHHHHHHHHHHhcCCCeeeeeeeeeecccCCCCeEE
Confidence            378999999999999864 57889999875321      1235688999999999 6999999999985321   12579


Q ss_pred             EEEEecCCCChhhhhcc--cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhh
Q 006019          450 MVFEYAPNGTLFEHIHI--KESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~--~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~  527 (664)
                      +||||+++|+|.++++.  .....+++.....++.+++.|+.|||+.+  ++||||||+||++++++.+||+|||+++..
T Consensus        97 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dlkp~nili~~~~~~kl~dfg~~~~~  174 (286)
T cd06638          97 LVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNK--TIHRDVKGNNILLTTEGGVKLVDFGVSAQL  174 (286)
T ss_pred             EEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhCC--ccccCCCHHhEEECCCCCEEEccCCceeec
Confidence            99999999999988753  23456889999999999999999999988  999999999999999999999999998754


Q ss_pred             hhh---------hhhcccccccC-----CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCcccc
Q 006019          528 AMA---------EMAATSKKLSS-----APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFV  593 (664)
Q Consensus       528 ~~~---------~~~~~~pe~~~-----~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (664)
                      ...         ...+.+||...     ...++.++|||||||++|||+||+.||.... ....+ ......  ......
T Consensus       175 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~-~~~~~-~~~~~~--~~~~~~  250 (286)
T cd06638         175 TSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLH-PMRAL-FKIPRN--PPPTLH  250 (286)
T ss_pred             ccCCCccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCc-hhHHH-hhcccc--CCCccc
Confidence            321         12344676543     2346889999999999999999999984321 11111 111110  000111


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          594 DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       594 d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      +      +......+.+++.+||+.+|++||++.|+++.
T Consensus       251 ~------~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~  283 (286)
T cd06638         251 Q------PELWSNEFNDFIRKCLTKDYEKRPTVSDLLQH  283 (286)
T ss_pred             C------CCCcCHHHHHHHHHHccCCcccCCCHHHHhhc
Confidence            1      11223468899999999999999999999864

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=100.00  E-value=1.1e-31  Score=277.19  Aligned_cols=236  Identities=20%  Similarity=0.295  Sum_probs=188.3

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||+|... ++..+++|.+.....      ..+.+.+|++++++++|+|++++++++...+  ..++|+|
T Consensus        24 ~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~------~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~lv~e   95 (286)
T cd06614          24 LEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ------NKELIINEILIMKDCKHPNIVDYYDSYLVGD--ELWVVME   95 (286)
T ss_pred             hHhccCCCCeEEEEEEEccCCcEEEEEEEecCch------hHHHHHHHHHHHHHCCCCCeeEEEEEEEECC--EEEEEEe
Confidence            467999999999999976 688899998864332      3467899999999999999999999998876  7799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      |+++++|.+++.... ..+++..+..++.+++.||+|||+.+  ++|+||+|+||+++.++.+||+|||++......   
T Consensus        96 ~~~~~~L~~~l~~~~-~~l~~~~~~~i~~~i~~~L~~lH~~g--i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~  172 (286)
T cd06614          96 YMDGGSLTDIITQNF-VRMNEPQIAYVCREVLQGLEYLHSQN--VIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSK  172 (286)
T ss_pred             ccCCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHhCC--eeeCCCChhhEEEcCCCCEEECccchhhhhccchhh
Confidence            999999999997432 47999999999999999999999988  999999999999999999999999987654321   


Q ss_pred             ------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          531 ------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       531 ------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                            ...+.+||......++.++|||||||++|||+||+.||...  ............  ......      .....
T Consensus       173 ~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~--~~~~~~~~~~~~--~~~~~~------~~~~~  242 (286)
T cd06614         173 RNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLRE--PPLRALFLITTK--GIPPLK------NPEKW  242 (286)
T ss_pred             hccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHhc--CCCCCc------chhhC
Confidence                  12345677777777899999999999999999999998422  222222211111  111111      11123


Q ss_pred             HHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          605 LETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      +..+.+++.+||+.+|.+||++.++++
T Consensus       243 ~~~l~~li~~~l~~~p~~Rpt~~~il~  269 (286)
T cd06614         243 SPEFKDFLNKCLVKDPEKRPSAEELLQ  269 (286)
T ss_pred             CHHHHHHHHHHhccChhhCcCHHHHhh
Confidence            456889999999999999999999975

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=100.00  E-value=5.7e-32  Score=286.11  Aligned_cols=253  Identities=19%  Similarity=0.232  Sum_probs=185.5

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.+.||+|+||.||+|... ++..+++|++......   ......+.+|+.+++++ +|+||+++++++...+....++|
T Consensus        11 ~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~---~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~~lv   87 (337)
T cd07852          11 ILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRN---ATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDIYLV   87 (337)
T ss_pred             HhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCc---chhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceEEEE
Confidence            4578999999999999965 5788999988542211   12235677899999999 99999999999876544467999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhhh
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  531 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~~  531 (664)
                      |||++ ++|..++...   .++|..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++......
T Consensus        88 ~e~~~-~~L~~~~~~~---~~~~~~~~~i~~qi~~~L~~LH~~~--i~H~dl~p~nill~~~~~~kl~d~g~~~~~~~~~  161 (337)
T cd07852          88 FEYME-TDLHAVIRAN---ILEDVHKRYIMYQLLKALKYIHSGN--VIHRDLKPSNILLNSDCRVKLADFGLARSLSELE  161 (337)
T ss_pred             ecccc-cCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEEcCCCcEEEeeccchhcccccc
Confidence            99997 5998888532   7889999999999999999999998  9999999999999999999999999987653221


Q ss_pred             --------------hhcccccccC-CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCC--------
Q 006019          532 --------------MAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP--------  588 (664)
Q Consensus       532 --------------~~~~~pe~~~-~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~--------  588 (664)
                                    ..+.+||... ....+.++||||||+++|||+||+.||.....  .+...........        
T Consensus       162 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~~--~~~~~~~~~~~~~~~~~~~~~  239 (337)
T cd07852         162 ENPENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTST--LNQLEKIIEVIGPPSAEDIES  239 (337)
T ss_pred             ccccCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCCCCh--HHHHHHHHHHhCCCCHHHHHH
Confidence                          1245577543 34578899999999999999999999843211  1111111100000        


Q ss_pred             ---------CccccCCC---CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH--HHhhh
Q 006019          589 ---------LQQFVDPT---LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI--LREIT  637 (664)
Q Consensus       589 ---------~~~~~d~~---~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~--L~~i~  637 (664)
                               ...+....   ..........++.+++.+||+.+|++||++.++++.  ++...
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~~~~~~~~~  302 (337)
T cd07852         240 IKSPFAATMLDSLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRLTAEEALEHPYVAQFH  302 (337)
T ss_pred             HHhhhHHHhhhhcccccccchhhhccCCCHHHHHHHHHhccCCcccccCHHHHhhChhhhhhc
Confidence                     00000000   001111234678999999999999999999999975  44443

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=4.8e-32  Score=269.69  Aligned_cols=254  Identities=17%  Similarity=0.232  Sum_probs=186.5

Q ss_pred             cccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCc-ccceEEEEecCCC----ceeE
Q 006019          376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN-FVNLIGFCEEEEP----FTRM  449 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~n-iv~l~g~~~~~~~----~~~~  449 (664)
                      ++||+|+||+||+|+. .+|+.||+|++......+.   ......+|+.++++++|+| ||+|++++...+.    ...+
T Consensus        17 eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG---~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~~l~   93 (323)
T KOG0594|consen   17 EKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEG---VPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIGKLY   93 (323)
T ss_pred             HHhCCCCceEEEEEEEecCCCEEEEEEEeccccccC---CCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccceEE
Confidence            5699999999999994 5789999999987765321   2234578999999999999 9999999987552    1467


Q ss_pred             EEEEecCCCChhhhhcccCC--CCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhh
Q 006019          450 MVFEYAPNGTLFEHIHIKES--EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~--~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~  527 (664)
                      +|+||+.. +|.+++.....  ..++......++.|+++|++|||+.+  |+||||||.|||+++++.+||+|||+|+..
T Consensus        94 lvfe~~d~-DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~~--IlHRDLKPQNlLi~~~G~lKlaDFGlAra~  170 (323)
T KOG0594|consen   94 LVFEFLDR-DLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSHG--ILHRDLKPQNLLISSSGVLKLADFGLARAF  170 (323)
T ss_pred             EEEEeecc-cHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhCC--eecccCCcceEEECCCCcEeeeccchHHHh
Confidence            99999976 99999865432  35777889999999999999999999  999999999999999999999999999976


Q ss_pred             hhhh---------hhcccccccCCC-CCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHH--hc--CCCCCcccc
Q 006019          528 AMAE---------MAATSKKLSSAP-SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY--LS--GVQPLQQFV  593 (664)
Q Consensus       528 ~~~~---------~~~~~pe~~~~~-~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~--~~--~~~~~~~~~  593 (664)
                      ....         ..+.+||...+. .++...||||+||++.||++++.-|.++. +..+..+-.  +.  .......+.
T Consensus       171 ~ip~~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~s-e~~ql~~If~~lGtP~e~~Wp~v~  249 (323)
T KOG0594|consen  171 SIPMRTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDS-EIDQLFRIFRLLGTPNEKDWPGVS  249 (323)
T ss_pred             cCCcccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCc-HHHHHHHHHHHcCCCCccCCCCcc
Confidence            5222         234467655443 68999999999999999999887774332 222222111  10  001111100


Q ss_pred             ---CC--CCC------CCCH---HHHHHHHHHHHHhccCCCCCCCCHHHHHHH--HHhh
Q 006019          594 ---DP--TLS------SFDE---EQLETLGELIKSCVRADPEKRPTMRDIAAI--LREI  636 (664)
Q Consensus       594 ---d~--~~~------~~~~---~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~--L~~i  636 (664)
                         +-  ...      ....   .......+++.+|++.+|..|.|++.+++.  +.++
T Consensus       250 ~~~~~k~~f~~~~~~~~l~~~~~~~~~~~~dll~~~L~y~p~~R~Sa~~al~h~yf~~~  308 (323)
T KOG0594|consen  250 SLPDYKAPFPKWPGPKDLSSILPKLDPDGIELLSKLLQYDPAKRISAKGALTHPYFSEL  308 (323)
T ss_pred             ccccccccCcCCCCccchHHhccccCccHHHHHHHHhccCcccCcCHHHHhcChhhccc
Confidence               00  000      0001   111367899999999999999999998876  5444

>PHA03207 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.8e-32  Score=295.82  Aligned_cols=244  Identities=20%  Similarity=0.249  Sum_probs=181.9

Q ss_pred             hhhhcccccCCCeEEEEEEEC---CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          372 EDFSNVIGSSPIGTVYKGTLS---NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~~---~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      +.+.+.||+|+||.||++...   .+..|++|.+...          +.+.+|++++++++|||||++++++....  ..
T Consensus        94 y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~----------~~~~~E~~il~~l~h~~iv~~~~~~~~~~--~~  161 (392)
T PHA03207         94 YNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG----------KTPGREIDILKTISHRAIINLIHAYRWKS--TV  161 (392)
T ss_pred             eEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc----------ccHHHHHHHHHhcCCCCccceeeeEeeCC--EE
Confidence            344578999999999999753   3567888876421          23568999999999999999999998766  67


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++||||+. ++|.+++.  ....+++..+..|+.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...
T Consensus       162 ~lv~e~~~-~~l~~~l~--~~~~l~~~~~~~i~~ql~~aL~~LH~~g--ivHrDlkp~Nill~~~~~~~l~DfG~a~~~~  236 (392)
T PHA03207        162 CMVMPKYK-CDLFTYVD--RSGPLPLEQAITIQRRLLEALAYLHGRG--IIHRDVKTENIFLDEPENAVLGDFGAACKLD  236 (392)
T ss_pred             EEEehhcC-CCHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCCHHHEEEcCCCCEEEccCccccccC
Confidence            99999996 68888883  4467999999999999999999999998  9999999999999999999999999987553


Q ss_pred             h-----------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCC-ChHHHHHHHhcCCCC--C-----
Q 006019          529 M-----------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG-SLEDWAADYLSGVQP--L-----  589 (664)
Q Consensus       529 ~-----------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~-~~~~~~~~~~~~~~~--~-----  589 (664)
                      .           ....+.+||+.....++.++|||||||++|||++|+.||..... ...............  .     
T Consensus       237 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~l~~i~~~~~~~~~~~~~~  316 (392)
T PHA03207        237 AHPDTPQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLRSIIRCMQVHPLEFPQN  316 (392)
T ss_pred             cccccccccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCCCCcHHHHHHHHHHhccCccccCCc
Confidence            2           12334578888777889999999999999999999999853221 111111111110000  0     


Q ss_pred             ------------ccccCCCCC--CC--CHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          590 ------------QQFVDPTLS--SF--DEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       590 ------------~~~~d~~~~--~~--~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                                  .....+...  ..  .......+.+++.+|++.||++||++.|++..
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~Rpsa~e~l~~  375 (392)
T PHA03207        317 GSTNLCKHFKQYAIVLRPPYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFRPSAQDILSL  375 (392)
T ss_pred             cchhHHHHHHhhcccccCCccccchhhccCcchhHHHHHHHHhccChhhCCCHHHHhhC
Confidence                        000000000  00  01123467889999999999999999998875

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=100.00  E-value=3.8e-32  Score=280.70  Aligned_cols=241  Identities=21%  Similarity=0.275  Sum_probs=182.6

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcccceEEEEecCCCceeEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      .+.||+|+||.||++... ++..+|+|.+......    .....+.+|+.++.++. |+||+++++++...+  ..+++|
T Consensus         9 ~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~----~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~--~~~~~~   82 (288)
T cd06616           9 LGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDE----KEQKRLLMDLDVVMRSSDCPYIVKFYGALFREG--DCWICM   82 (288)
T ss_pred             HHHhCCCCceEEEEEEECCCCCEEEEEEehhccCh----HHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCC--cEEEEE
Confidence            367999999999999964 5889999988643321    34567899999999996 999999999988766  668999


Q ss_pred             EecCCCChhhh---hcccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          453 EYAPNGTLFEH---IHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       453 Ey~~~GsL~~~---l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~-~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ||+.. ++.++   +.......+++....+++.+++.||+|||+ .+  ++||||||+||+++.++.+||+|||+++...
T Consensus        83 e~~~~-~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~--i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~  159 (288)
T cd06616          83 ELMDI-SLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEELK--IIHRDVKPSNILLDRNGNIKLCDFGISGQLV  159 (288)
T ss_pred             ecccC-CHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcCC--eeccCCCHHHEEEccCCcEEEeecchhHHhc
Confidence            99864 55443   332334678999999999999999999996 47  9999999999999999999999999987653


Q ss_pred             hh--------hhhcccccccCCC---CCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 006019          529 MA--------EMAATSKKLSSAP---SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  597 (664)
Q Consensus       529 ~~--------~~~~~~pe~~~~~---~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  597 (664)
                      ..        ...+.+||.....   .++.++|||||||++|||+||+.||.... ...+.........       .+.+
T Consensus       160 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~-~~~~~~~~~~~~~-------~~~~  231 (288)
T cd06616         160 DSIAKTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWN-SVFDQLTQVVKGD-------PPIL  231 (288)
T ss_pred             cCCccccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcc-hHHHHHhhhcCCC-------CCcC
Confidence            21        2234567766554   67889999999999999999999995332 1212222221111       0111


Q ss_pred             C-CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          598 S-SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       598 ~-~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      . ......+.++.+++.+||+.+|++||++.+|++.
T Consensus       232 ~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~~  267 (288)
T cd06616         232 SNSEEREFSPSFVNFINLCLIKDESKRPKYKELLEH  267 (288)
T ss_pred             CCcCCCccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            1 1112345678999999999999999999998864

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=100.00  E-value=4.2e-32  Score=279.25  Aligned_cols=238  Identities=16%  Similarity=0.191  Sum_probs=178.8

Q ss_pred             ccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHh---ccCCCcccceEEEEecCCCceeEEEE
Q 006019          377 VIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLS---KVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       377 ~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~---~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      .||+|+||.||++... ++..+|+|.+.......  ......+.+|..+++   ..+|+||+.+.+++...+  ..++||
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~lv~   76 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKM--KQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPD--KLCFIL   76 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEcccccc--chHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCC--eEEEEE
Confidence            4899999999999964 58899999886543322  112233445544443   347999999999998776  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++|+|.+++..  ...+++.....++.|++.||+|||+.+  ++||||||+|||+++++.+||+|||++.....   
T Consensus        77 e~~~~~~L~~~i~~--~~~l~~~~~~~i~~qi~~al~~lH~~~--ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~~~  152 (279)
T cd05633          77 DLMNGGDLHYHLSQ--HGVFSEKEMRFYATEIILGLEHMHNRF--VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKP  152 (279)
T ss_pred             ecCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--cCCCCCCHHHEEECCCCCEEEccCCcceeccccCc
Confidence            99999999998863  346999999999999999999999998  99999999999999999999999999865421   


Q ss_pred             ----hhhhcccccccC-CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          530 ----AEMAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       530 ----~~~~~~~pe~~~-~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                          ....+.+||... ...++.++|||||||++|||+||+.||.................       ...   ..++..
T Consensus       153 ~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~-------~~~---~~~~~~  222 (279)
T cd05633         153 HASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLT-------VNV---ELPDSF  222 (279)
T ss_pred             cCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCCcCHHHHHHHhhc-------CCc---CCcccc
Confidence                123445677654 34578899999999999999999999954322222221111110       011   122334


Q ss_pred             HHHHHHHHHHhccCCCCCCC-----CHHHHHHH
Q 006019          605 LETLGELIKSCVRADPEKRP-----TMRDIAAI  632 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RP-----s~~ev~~~  632 (664)
                      ..++.+++.+||+.||++||     +++++++.
T Consensus       223 ~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~h  255 (279)
T cd05633         223 SPELKSLLEGLLQRDVSKRLGCLGRGAQEVKEH  255 (279)
T ss_pred             CHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHhC
Confidence            46788999999999999999     58888773

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.7e-32  Score=280.16  Aligned_cols=236  Identities=16%  Similarity=0.276  Sum_probs=183.9

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC---CCcccceEEEEecCCCceeE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN---HKNFVNLIGFCEEEEPFTRM  449 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~---H~niv~l~g~~~~~~~~~~~  449 (664)
                      +.+.||+|+||.||+|.. .++..+++|.+.....    .....++.+|++++++++   |||++++++++....  ..+
T Consensus         5 ~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~----~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~--~~~   78 (277)
T cd06917           5 RLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTP----DDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGP--RLW   78 (277)
T ss_pred             hhhheeccCCceEEEEEEcCCCcEEEEEEecCCCC----chhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCC--EEE
Confidence            346799999999999996 4688999998864322    223457889999999997   999999999998766  679


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                      +||||+++++|.++++.   ..+++.....++.+++.|+.|||+.+  ++||||+|+||++++++.++|+|||++.....
T Consensus        79 lv~e~~~~~~L~~~~~~---~~l~~~~~~~i~~~i~~~l~~lh~~~--i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~  153 (277)
T cd06917          79 IIMEYAEGGSVRTLMKA---GPIAEKYISVIIREVLVALKYIHKVG--VIHRDIKAANILVTNTGNVKLCDFGVAALLNQ  153 (277)
T ss_pred             EEEecCCCCcHHHHHHc---cCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCcCHHHEEEcCCCCEEEccCCceeecCC
Confidence            99999999999998853   36899999999999999999999998  99999999999999999999999998876532


Q ss_pred             h---------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 006019          530 A---------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  599 (664)
Q Consensus       530 ~---------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  599 (664)
                      .         ...+.+||.... ..++.++|||||||++|||++|+.||...  ....+.... ..      ...+.+..
T Consensus       154 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~--~~~~~~~~~-~~------~~~~~~~~  224 (277)
T cd06917         154 NSSKRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDV--DAFRAMMLI-PK------SKPPRLED  224 (277)
T ss_pred             CccccccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCC--Chhhhhhcc-cc------CCCCCCCc
Confidence            1         122456776543 34688999999999999999999999432  222211111 00      01111111


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          600 FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       600 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                        ...+.++.+++.+||+.||++||++.+++.
T Consensus       225 --~~~~~~~~~~i~~~l~~~p~~R~~~~~il~  254 (277)
T cd06917         225 --NGYSKLLREFVAACLDEEPKERLSAEELLK  254 (277)
T ss_pred             --ccCCHHHHHHHHHHcCCCcccCcCHHHHhh
Confidence              113456889999999999999999999976

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=100.00  E-value=3.8e-32  Score=281.21  Aligned_cols=248  Identities=18%  Similarity=0.226  Sum_probs=181.8

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|... ++..+|+|.+.......    ....+.+|++++++++|+||+++++++.+.+  ..++||
T Consensus         9 ~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~----~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   82 (291)
T cd07844           9 KLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEG----APFTAIREASLLKDLKHANIVTLHDIIHTKK--TLTLVF   82 (291)
T ss_pred             EEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccC----CchhHHHHHHHHhhCCCcceeeEEEEEecCC--eEEEEE
Confidence            3478999999999999975 67899999986543221    1235778999999999999999999998776  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++ +|.+++... ...+++.....++.+++.||.|||+.+  ++||||||+||++++++.+||+|||+++....   
T Consensus        83 e~~~~-~L~~~~~~~-~~~~~~~~~~~~~~ql~~al~~lH~~~--i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~  158 (291)
T cd07844          83 EYLDT-DLKQYMDDC-GGGLSMHNVRLFLFQLLRGLAYCHQRR--VLHRDLKPQNLLISERGELKLADFGLARAKSVPSK  158 (291)
T ss_pred             ecCCC-CHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhCC--eecccCCHHHEEEcCCCCEEECccccccccCCCCc
Confidence            99984 999888633 346889999999999999999999998  99999999999999999999999998865421   


Q ss_pred             ------hhhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHH--HHHhcCC--CCC------ccc
Q 006019          530 ------AEMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWA--ADYLSGV--QPL------QQF  592 (664)
Q Consensus       530 ------~~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~--~~~~~~~--~~~------~~~  592 (664)
                            ....+.+||...+ ..++.++|||||||++|||++|+.||.........+.  ...+...  ...      ...
T Consensus       159 ~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (291)
T cd07844         159 TYSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVEDQLHKIFRVLGTPTEETWPGVSSNPEF  238 (291)
T ss_pred             cccccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHhcCCCChhhhhhhhhcccc
Confidence                  1223456776543 4578899999999999999999999953321111111  0110000  000      000


Q ss_pred             cC--------CCCCCCCHHH--HHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          593 VD--------PTLSSFDEEQ--LETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       593 ~d--------~~~~~~~~~~--~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ..        ..+.......  ...+.+++.+|++.+|++||++.++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~p~~Rps~~e~l~  287 (291)
T cd07844         239 KPYSFPFYPPRPLINHAPRLDRIPHGEELALKFLQYEPKKRISAAEAMK  287 (291)
T ss_pred             ccccccccCChhHHHhCcCCCCchhHHHHHHHHhccCcccccCHHHHhc
Confidence            00        0000000001  146789999999999999999998875

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=100.00  E-value=3.8e-33  Score=283.21  Aligned_cols=242  Identities=23%  Similarity=0.414  Sum_probs=186.8

Q ss_pred             hhcccccCCCeEEEEEEECC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+++... +..+|+|.+.......   .......+|+.++++++||||+++++++....  ..++||
T Consensus         3 ~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~---~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~--~~~~v~   77 (260)
T PF00069_consen    3 LVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEE---EEREENIREIKILRRLRHPNIVQILDVFQDDN--YLYIVM   77 (260)
T ss_dssp             EEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHH---HHHHHHHHHHHHHHHHTBTTBCHEEEEEEESS--EEEEEE
T ss_pred             EeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccc---cccchhhhhhhccccccccccccccccccccc--cccccc
Confidence            45789999999999999764 5689999997543221   22233456999999999999999999998876  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh----
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA----  528 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~----  528 (664)
                      ||+++++|.+++.  ....+++..+..++.++++||+|||+.+  ++|+||||+||++++++.++|+|||.+....    
T Consensus        78 ~~~~~~~L~~~l~--~~~~~~~~~~~~~~~qi~~~L~~Lh~~~--i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~~  153 (260)
T PF00069_consen   78 EYCPGGSLQDYLQ--KNKPLSEEEILKIAYQILEALAYLHSKG--IVHRDIKPENILLDENGEVKLIDFGSSVKLSENNE  153 (260)
T ss_dssp             EEETTEBHHHHHH--HHSSBBHHHHHHHHHHHHHHHHHHHHTT--EEESSBSGGGEEESTTSEEEESSGTTTEESTSTTS
T ss_pred             ccccccccccccc--cccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccc
Confidence            9999999999986  3456899999999999999999999998  9999999999999999999999999986421    


Q ss_pred             -----hhhhhcccccccC-CCCCCcCCcchhhHHHHHHHHhCCCCccCCCC-ChHHHHHHHhcCCCCCccccCCCCCCCC
Q 006019          529 -----MAEMAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNG-SLEDWAADYLSGVQPLQQFVDPTLSSFD  601 (664)
Q Consensus       529 -----~~~~~~~~pe~~~-~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~  601 (664)
                           .....+.+||... ....+.++||||+|+++|||++|+.||..... +............  .   .... . ..
T Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~~~--~---~~~~-~-~~  226 (260)
T PF00069_consen  154 NFNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEESNSDDQLEIIEKILKRP--L---PSSS-Q-QS  226 (260)
T ss_dssp             EBSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSHHHHHHHHHHHHHTH--H---HHHT-T-SH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhccccc--c---cccc-c-cc
Confidence                 1123456788877 77889999999999999999999999953310 1111111111110  0   0000 0 00


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          602 EEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       602 ~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .....++.+++.+||+.||++||++.++++
T Consensus       227 ~~~~~~l~~li~~~l~~~p~~R~~~~~l~~  256 (260)
T PF00069_consen  227 REKSEELRDLIKKMLSKDPEQRPSAEELLK  256 (260)
T ss_dssp             TTSHHHHHHHHHHHSSSSGGGSTTHHHHHT
T ss_pred             chhHHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            011267999999999999999999999875

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=100.00  E-value=2.2e-32  Score=282.26  Aligned_cols=247  Identities=18%  Similarity=0.236  Sum_probs=186.6

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|... ++..|++|.+......   ......+.+|++++++++|+||+++++++...+  ..++||
T Consensus         5 ~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~iv~   79 (288)
T cd07833           5 VLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDD---EDVKKTALREVKVLRQLRHENIVNLKEAFRRKG--RLYLVF   79 (288)
T ss_pred             EEEEecccCCeeEEEEEeCCCCcEEEEehhhhhccc---ccchhHHHHHHHHHHhcCCCCeeehhheEEECC--EEEEEE
Confidence            4578999999999999975 5789999988653322   233467899999999999999999999998866  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhhh-
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  531 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~~-  531 (664)
                      ||++++.+..+..  ....+++.....++.+++.|++|||+.+  ++||||+|+||++++++.+||+|||++....... 
T Consensus        80 e~~~~~~l~~~~~--~~~~~~~~~~~~~~~~i~~~l~~LH~~~--i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~~  155 (288)
T cd07833          80 EYVERTLLELLEA--SPGGLPPDAVRSYIWQLLQAIAYCHSHN--IIHRDIKPENILVSESGVLKLCDFGFARALRARPA  155 (288)
T ss_pred             ecCCCCHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHeEECCCCCEEEEeeecccccCCCcc
Confidence            9999877766553  2345899999999999999999999998  9999999999999999999999999987654322 


Q ss_pred             ---------hhcccccccCCC-CCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHH---hcC-----------CC
Q 006019          532 ---------MAATSKKLSSAP-SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY---LSG-----------VQ  587 (664)
Q Consensus       532 ---------~~~~~pe~~~~~-~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~---~~~-----------~~  587 (664)
                               ..+.+||+.... .++.++||||||+++|||++|+.||.....  .+.....   ...           ..
T Consensus       156 ~~~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (288)
T cd07833         156 SPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSD--IDQLYLIQKCLGPLPPSHQELFSSNP  233 (288)
T ss_pred             ccccCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHHHhCCCCHHHhhhcccCc
Confidence                     234567776666 788999999999999999999999853221  1111110   000           00


Q ss_pred             CC-----ccccCCCC--CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          588 PL-----QQFVDPTL--SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       588 ~~-----~~~~d~~~--~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ..     .+..++..  ..++...+.++.+++.+||..+|++||+++++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  284 (288)
T cd07833         234 RFAGVAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCDELLQ  284 (288)
T ss_pred             cccccccCCCCCcHHHHHhcCCccchHHHHHHHHHhccCchhcccHHHHhc
Confidence            00     00000000  0112223577999999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=100.00  E-value=5e-32  Score=280.26  Aligned_cols=236  Identities=22%  Similarity=0.313  Sum_probs=186.5

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||++... +++.+|+|.+.......  ......+.+|++++++++||||+++++++.+.+  ..++||
T Consensus         5 ~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~~v~   80 (290)
T cd05580           5 FIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVK--LKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDS--NLYLVM   80 (290)
T ss_pred             EEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHHhCCCCCccceeeEEEcCC--eEEEEE
Confidence            4478999999999999965 58899999886433211  233567899999999999999999999998876  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++|+|.+++..  ...+++..+..++.+++.||+|||+.+  ++||||+|+||++++++.+||+|||+++.....  
T Consensus        81 e~~~~~~L~~~~~~--~~~l~~~~~~~~~~qil~~l~~lH~~~--i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~  156 (290)
T cd05580          81 EYVPGGELFSHLRK--SGRFPEPVARFYAAQVVLALEYLHSLD--IVYRDLKPENLLLDSDGYIKITDFGFAKRVKGRTY  156 (290)
T ss_pred             ecCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--EecCCCCHHHEEECCCCCEEEeeCCCccccCCCCC
Confidence            99999999999863  356899999999999999999999988  999999999999999999999999998865432  


Q ss_pred             ----hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHH
Q 006019          531 ----EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE  606 (664)
Q Consensus       531 ----~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  606 (664)
                          ...+.+||.......+.++||||||+++|||+||+.||....  ..+.......+..           ..+.....
T Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~--~~~~~~~~~~~~~-----------~~~~~~~~  223 (290)
T cd05580         157 TLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDN--PIQIYEKILEGKV-----------RFPSFFSP  223 (290)
T ss_pred             CCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHhcCCc-----------cCCccCCH
Confidence                223456777766677889999999999999999999984322  2222222221111           11122235


Q ss_pred             HHHHHHHHhccCCCCCCC-----CHHHHH
Q 006019          607 TLGELIKSCVRADPEKRP-----TMRDIA  630 (664)
Q Consensus       607 ~l~~l~~~Cl~~~P~~RP-----s~~ev~  630 (664)
                      .+.+++.+||+.+|.+|+     +++|++
T Consensus       224 ~l~~li~~~l~~~p~~R~~~~~~~~~~l~  252 (290)
T cd05580         224 DAKDLIRNLLQVDLTKRLGNLKNGVNDIK  252 (290)
T ss_pred             HHHHHHHHHccCCHHHccCcccCCHHHHH
Confidence            688999999999999998     555554

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=100.00  E-value=2.8e-32  Score=282.63  Aligned_cols=237  Identities=21%  Similarity=0.314  Sum_probs=186.0

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|.. .++..+++|.+.....     ...+.+.+|+.++++++||||+++++++...+  ..++|+
T Consensus        23 ~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~-----~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~--~~~lv~   95 (293)
T cd06647          23 RFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQ-----PKKELIINEILVMRENKHPNIVNYLDSYLVGD--ELWVVM   95 (293)
T ss_pred             eeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccc-----hHHHHHHHHHHHHhhcCCCCeeehhheeeeCC--cEEEEE
Confidence            447899999999999985 4678899998754321     23467899999999999999999999998776  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++|+|.+++..   ..+++..+..++.+++.|++|||+.+  ++||||||+||+++.++.+||+|||++......  
T Consensus        96 e~~~~~~L~~~~~~---~~l~~~~~~~i~~~l~~al~~LH~~g--i~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~~  170 (293)
T cd06647          96 EYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLHSNQ--VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS  170 (293)
T ss_pred             ecCCCCcHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHhCC--EeeccCCHHHEEEcCCCCEEEccCcceeccccccc
Confidence            99999999999853   35789999999999999999999998  999999999999999999999999987654321  


Q ss_pred             -------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          531 -------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       531 -------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                             ...+.+||......++.++|||||||++||+++|+.||.....  .+........ .      .+.. ..+..
T Consensus       171 ~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~--~~~~~~~~~~-~------~~~~-~~~~~  240 (293)
T cd06647         171 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENP--LRALYLIATN-G------TPEL-QNPEK  240 (293)
T ss_pred             ccccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCh--hhheeehhcC-C------CCCC-CCccc
Confidence                   1235568877777788999999999999999999999953221  1111000000 0      0001 11222


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      ....+.+++.+||+.+|++||++.+++..
T Consensus       241 ~~~~l~~li~~~l~~~p~~Rp~~~~il~h  269 (293)
T cd06647         241 LSAIFRDFLNRCLEMDVEKRGSAKELLQH  269 (293)
T ss_pred             cCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            34568899999999999999999998865

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=100.00  E-value=7.7e-32  Score=282.11  Aligned_cols=247  Identities=17%  Similarity=0.215  Sum_probs=181.7

Q ss_pred             cccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEec
Q 006019          376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYA  455 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey~  455 (664)
                      +.+|.|+++.||++.. ++..+|+|++.....   .....+.+.+|++++++++|+||+++++++...+  ..+++|||+
T Consensus         8 ~~~~~~~~v~~~~~~~-~~~~~avK~~~~~~~---~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~--~~~~~~e~~   81 (314)
T cd08216           8 KCFEDLMIVHLAKHKP-TNTLVAVKKINLDSC---SKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDS--ELYVVSPLM   81 (314)
T ss_pred             HhhcCCceEEEEEecC-CCCEEEEEEEecccc---chhHHHHHHHHHHHHHhcCCcchhhhhheeecCC--eEEEEEecc
Confidence            4456666666666665 688999999875421   1234567999999999999999999999998776  679999999


Q ss_pred             CCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh-----
Q 006019          456 PNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-----  530 (664)
Q Consensus       456 ~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~-----  530 (664)
                      ++|+|.++++......+++.....++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||.+......     
T Consensus        82 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~--ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~  159 (314)
T cd08216          82 AYGSCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSKG--FIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQR  159 (314)
T ss_pred             CCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCcceEEEecCCceEEecCccceeecccccccc
Confidence            9999999997554556889999999999999999999998  999999999999999999999999987644211     


Q ss_pred             -----------hhhcccccccCC--CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCC-----------
Q 006019          531 -----------EMAATSKKLSSA--PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV-----------  586 (664)
Q Consensus       531 -----------~~~~~~pe~~~~--~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~-----------  586 (664)
                                 ...+.+||....  ..++.++|||||||++|||++|+.||..... ....... ..+.           
T Consensus       160 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~~-~~~~~~~-~~~~~~~~~~~~~~~  237 (314)
T cd08216         160 VVHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDMPA-TQMLLEK-VRGTVPCLLDKSTYP  237 (314)
T ss_pred             ccccccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHH-HhccCccccccCchh
Confidence                       112345665543  3467899999999999999999999953221 1111111 1100           


Q ss_pred             ---CCCcc----ccCCCC-----CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          587 ---QPLQQ----FVDPTL-----SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       587 ---~~~~~----~~d~~~-----~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                         .....    ..++..     .........++.+++.+||+.+|++||+++++++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~  295 (314)
T cd08216         238 LYEDSMSQSRSSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLNH  295 (314)
T ss_pred             hhcCCcCcccccccccchhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCcCHHHHhcC
Confidence               00000    001100     01122334678899999999999999999998863

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=100.00  E-value=5.1e-32  Score=279.24  Aligned_cols=247  Identities=17%  Similarity=0.209  Sum_probs=186.8

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|... +|..+++|++......   ......+.+|+.++++++|+||+++++++....  ..++|+
T Consensus         4 ~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~---~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--~~~~v~   78 (286)
T cd07832           4 ILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLE---GGIPNQALREIKALQACQHPYVVKLLDVFPHGS--GFVLVM   78 (286)
T ss_pred             EEeecccCCCcEEEEEEECCCCceEEEEEEEccccc---chhhHHHHHHHHHHHhCCCCCCcceeeEEecCC--eeEEEe
Confidence            4578999999999999964 6889999998754322   234567999999999999999999999998766  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+ +++|.++++.. ...+++.++.+++.++++||+|||+.+  ++|+||||+||+++.++.++|+|||++......  
T Consensus        79 e~~-~~~L~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~~  154 (286)
T cd07832          79 EYM-PSDLSEVLRDE-ERPLPEAQVKSYMRMLLKGVAYMHANG--IMHRDLKPANLLISADGVLKIADFGLARLFSEEEP  154 (286)
T ss_pred             ccc-CCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCcCHHHEEEcCCCcEEEeeeeecccccCCCC
Confidence            999 99999988643 356999999999999999999999998  999999999999999999999999998765332  


Q ss_pred             --------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCC-------------
Q 006019          531 --------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP-------------  588 (664)
Q Consensus       531 --------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~-------------  588 (664)
                              ...+.+||.... ..++.++||||+|++++||+||+.||.... ....+.. .......             
T Consensus       155 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~  232 (286)
T cd07832         155 RLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGEN-DIEQLAI-VFRTLGTPNEETWPGLTSLP  232 (286)
T ss_pred             CccccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCC-HHHHHHH-HHHHcCCCChHHHhhccCcc
Confidence                    123456776543 346889999999999999999977774322 2221111 1110000             


Q ss_pred             -CccccCCCCC-----CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          589 -LQQFVDPTLS-----SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       589 -~~~~~d~~~~-----~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                       ...+..+...     ...++....+.+++.+|++.+|++||++++++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~  281 (286)
T cd07832         233 DYNKITFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEALR  281 (286)
T ss_pred             hhhcccCCCCCcchHHHhCCCccHHHHHHHHHHhccChhhCCCHHHHhh
Confidence             0000000000     011123467899999999999999999999875

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=100.00  E-value=1.1e-31  Score=282.97  Aligned_cols=253  Identities=18%  Similarity=0.259  Sum_probs=186.4

Q ss_pred             ccccC--CCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          377 VIGSS--PIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       377 ~iG~G--~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .||+|  +||+||+++.. +|+.||+|.+......   ....+.+.+|+.+++.++||||+++++++...+  ..++|+|
T Consensus         5 ~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~--~~~~v~e   79 (328)
T cd08226           5 EIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCT---EEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGS--WLWVISP   79 (328)
T ss_pred             HhCCcccCceeEEEEEEcCCCcEEEEEEeccccCC---HHHHHHHHHHHHHHHhCCCCCcceEeeeEecCC--ceEEEEe
Confidence            46666  99999999964 7899999998654322   233467899999999999999999999998876  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|+|.+++.......+++.....++.+++.||+|||+++  ++||||||+||+++.++.+|++||+.+.....    
T Consensus        80 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~--ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~  157 (328)
T cd08226          80 FMAYGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQNG--YIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQK  157 (328)
T ss_pred             cccCCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEeCCCcEEEechHHHhhhhccCcc
Confidence            999999999987554456899999999999999999999988  99999999999999999999999975432211    


Q ss_pred             ------------hhhhcccccccCC--CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCC--C----
Q 006019          530 ------------AEMAATSKKLSSA--PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP--L----  589 (664)
Q Consensus       530 ------------~~~~~~~pe~~~~--~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~--~----  589 (664)
                                  ....+.+||+...  ..++.++|||||||++|||++|+.||......  +.....+.....  .    
T Consensus       158 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~  235 (328)
T cd08226         158 AKVVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDMLRT--QMLLQKLKGPPYSPLDITT  235 (328)
T ss_pred             ccccccccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcChH--HHHHHHhcCCCCCCccccc
Confidence                        0112456776544  34678999999999999999999999432211  111111110000  0    


Q ss_pred             -----------------------------ccccCCCCC-CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH--HHHhhh
Q 006019          590 -----------------------------QQFVDPTLS-SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA--ILREIT  637 (664)
Q Consensus       590 -----------------------------~~~~d~~~~-~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~--~L~~i~  637 (664)
                                                   ....+..+. .........+.+++.+||+.||++|||++|+++  .++.+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l~~~~~~~~~  315 (328)
T cd08226         236 FPCEESRMKNSQSGVDSGIGESVVAAGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEKRPSASSLLSHAFFKQVK  315 (328)
T ss_pred             cchhhhhhccchhhhhcccccchhccccccccccccccchhhhhhhHHHHHHHHHHccCCcccCCCHHHHhhCHHHHHHH
Confidence                                         000000010 112345567899999999999999999999963  455544


Q ss_pred             C
Q 006019          638 G  638 (664)
Q Consensus       638 ~  638 (664)
                      +
T Consensus       316 ~  316 (328)
T cd08226         316 E  316 (328)
T ss_pred             H
Confidence            4

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=100.00  E-value=8.3e-32  Score=274.91  Aligned_cols=242  Identities=16%  Similarity=0.285  Sum_probs=188.9

Q ss_pred             hcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCC-chhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          375 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDW-PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      .+.||+|+||.||+|.. .++..+|+|.+........ .....+.+.+|++++++++|+||+++++++.+.+  ..++|+
T Consensus         5 ~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~~~v~   82 (268)
T cd06630           5 GQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDS--HFNLFV   82 (268)
T ss_pred             cceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCC--eEEEEE
Confidence            46799999999999985 5688999998864432211 1224578999999999999999999999998776  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC-ceEecccCchhhhhhh-
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY-AAKLSDLSFWNEIAMA-  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~-~~kl~DfGla~~~~~~-  530 (664)
                      ||+++++|.+++..  ...+++....+++.+++.||+|||+++  ++|+||||+||+++.++ .+||+|||++...... 
T Consensus        83 e~~~~~~L~~~l~~--~~~~~~~~~~~~~~ql~~al~~LH~~~--i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~~~  158 (268)
T cd06630          83 EWMAGGSVSHLLSK--YGAFKEAVIINYTEQLLRGLSYLHENQ--IIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKG  158 (268)
T ss_pred             eccCCCcHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEcCCCCEEEEccccccccccccc
Confidence            99999999999863  346889999999999999999999998  99999999999998776 6999999998765321 


Q ss_pred             ------------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCC-ChHHHHHHHhcCCCCCccccCCCC
Q 006019          531 ------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG-SLEDWAADYLSGVQPLQQFVDPTL  597 (664)
Q Consensus       531 ------------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~  597 (664)
                                  ...+.+||.......+.++||||+|+++|||++|+.||..... ............         ...
T Consensus       159 ~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~---------~~~  229 (268)
T cd06630         159 TGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALIFKIASA---------TTA  229 (268)
T ss_pred             ccCCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCcchHHHHHHHhcc---------CCC
Confidence                        1234567777667788999999999999999999999853221 111211111110         001


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          598 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       598 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ...+......+.+++.+||+.+|++||++.++++
T Consensus       230 ~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~ll~  263 (268)
T cd06630         230 PSIPEHLSPGLRDVTLRCLELQPEDRPPSRELLK  263 (268)
T ss_pred             CCCchhhCHHHHHHHHHHcCCCcccCcCHHHHhc
Confidence            1233444567889999999999999999999874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=100.00  E-value=8e-32  Score=277.83  Aligned_cols=250  Identities=19%  Similarity=0.223  Sum_probs=186.1

Q ss_pred             hhcccccCCCeEEEEEEECC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc---CCCcccceEEEEecCCC---c
Q 006019          374 FSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV---NHKNFVNLIGFCEEEEP---F  446 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l---~H~niv~l~g~~~~~~~---~  446 (664)
                      +.+.||+|+||.||+|+.+. +..+|+|.+......+   .....+.+|+++++++   +|+|++++++++...+.   .
T Consensus         3 ~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~---~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~   79 (287)
T cd07838           3 ELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEE---GIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDREL   79 (287)
T ss_pred             EEEEecccCceEEEEEEECCCCCEEEEEEeccccccc---hhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCc
Confidence            34789999999999999864 8999999987544321   2335677788877666   59999999999987652   1


Q ss_pred             eeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhh
Q 006019          447 TRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  526 (664)
Q Consensus       447 ~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~  526 (664)
                      ..+++|||++ ++|.+++.......+++..+..++.+++.||+|||+.+  ++|+||+|+||+++.++.+||+|||++..
T Consensus        80 ~~~l~~e~~~-~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~--i~h~~l~~~nili~~~~~~~l~dfg~~~~  156 (287)
T cd07838          80 KLTLVFEHVD-QDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSHR--IVHRDLKPQNILVTSDGQVKIADFGLARI  156 (287)
T ss_pred             eeEEEehhcc-cCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeeccCChhhEEEccCCCEEEeccCccee
Confidence            2789999997 48988886544456999999999999999999999998  99999999999999999999999999876


Q ss_pred             hhhh--------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCC---------
Q 006019          527 IAMA--------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL---------  589 (664)
Q Consensus       527 ~~~~--------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~---------  589 (664)
                      ....        ...+.+||.......+.++|||||||++|||+||+.||...  ...+............         
T Consensus       157 ~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  234 (287)
T cd07838         157 YSFEMALTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGT--SEADQLDKIFDVIGLPSEEEWPRNV  234 (287)
T ss_pred             ccCCcccccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCC--ChHHHHHHHHHHcCCCChHhcCCCc
Confidence            5322        12345678777777899999999999999999999888432  2222222222110000         


Q ss_pred             ---ccccCCC----CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          590 ---QQFVDPT----LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       590 ---~~~~d~~----~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                         .......    ......+....+.+++.+||+.||++||++.+++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il~  283 (287)
T cd07838         235 SLPRSSFPSYTPRSFKSFVPEICEEGLDLLKKMLTFNPHKRISAFEALQ  283 (287)
T ss_pred             ccchhhcccccccchhhhhhhhhHHHHHHHHHHhccCCccCCCHHHHhc
Confidence               0000000    01111233467789999999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=100.00  E-value=6.4e-32  Score=278.14  Aligned_cols=239  Identities=17%  Similarity=0.262  Sum_probs=179.6

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHH-HhccCCCcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDT-LSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~-l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.+.||+|+||.||+|+.. +|..||+|++......    ....++..|+.. ++..+||||+++++++...+  ..+++
T Consensus         5 ~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~----~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~--~~~lv   78 (283)
T cd06617           5 VIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNS----QEQKRLLMDLDISMRSVDCPYTVTFYGALFREG--DVWIC   78 (283)
T ss_pred             EEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCc----HHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCC--cEEEE
Confidence            3478999999999999975 6899999988654321    223456666665 66678999999999998776  67999


Q ss_pred             EEecCCCChhhhhccc--CCCCCCHHHHHHHHHHHHHHHHHhhcC-CCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          452 FEYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gL~yLH~~-~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      |||++ |+|.++++..  ....+++....+++.|++.||+|||+. +  ++||||||+||+++.++.+||+|||+++...
T Consensus        79 ~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~--i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~  155 (283)
T cd06617          79 MEVMD-TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLS--VIHRDVKPSNVLINRNGQVKLCDFGISGYLV  155 (283)
T ss_pred             hhhhc-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCC--eecCCCCHHHEEECCCCCEEEeecccccccc
Confidence            99997 6888777532  335689999999999999999999985 7  9999999999999999999999999987553


Q ss_pred             hh--------hhhcccccccCC----CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCC
Q 006019          529 MA--------EMAATSKKLSSA----PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  596 (664)
Q Consensus       529 ~~--------~~~~~~pe~~~~----~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  596 (664)
                      ..        ...+.+||....    ..++.++||||||+++|||++|+.||.......... .......       .+.
T Consensus       156 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~-~~~~~~~-------~~~  227 (283)
T cd06617         156 DSVAKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQQL-KQVVEEP-------SPQ  227 (283)
T ss_pred             cccccccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCccccCHHHH-HHHHhcC-------CCC
Confidence            21        223456775533    345789999999999999999999984322222221 1111110       011


Q ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          597 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       597 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      +.  ....+.++.+++.+||+.+|++||++.++++
T Consensus       228 ~~--~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~  260 (283)
T cd06617         228 LP--AEKFSPEFQDFVNKCLKKNYKERPNYPELLQ  260 (283)
T ss_pred             CC--ccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            10  1123356889999999999999999999876

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=100.00  E-value=3.6e-32  Score=276.74  Aligned_cols=239  Identities=21%  Similarity=0.322  Sum_probs=192.3

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|++|.||+|+.. ++..+++|++......    ...+++.+|++.+.+++|+|++++++++...+  ..++|+
T Consensus         5 ~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~----~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~lv~   78 (264)
T cd06623           5 RVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDE----EFRKQLLRELKTLRSCESPYVVKCYGAFYKEG--EISIVL   78 (264)
T ss_pred             eeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcch----HHHHHHHHHHHHHHhcCCCCeeeEEEEEccCC--eEEEEE
Confidence            3478999999999999976 4899999988654321    34578999999999999999999999998876  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh-
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~-~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~-  530 (664)
                      ||+++++|.+++...  ..+++..+.+++.++++|++|||+ .+  ++||||+|+||+++.++.++|+|||++...... 
T Consensus        79 e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~l~~~l~~lh~~~~--~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~  154 (264)
T cd06623          79 EYMDGGSLADLLKKV--GKIPEPVLAYIARQILKGLDYLHTKRH--IIHRDIKPSNLLINSKGEVKIADFGISKVLENTL  154 (264)
T ss_pred             EecCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHhccCC--CccCCCCHHHEEECCCCCEEEccCccceecccCC
Confidence            999999999998633  568999999999999999999999 88  999999999999999999999999988765321 


Q ss_pred             --------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCC-ChHHHHHHHhcCCCCCccccCCCCCCCC
Q 006019          531 --------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG-SLEDWAADYLSGVQPLQQFVDPTLSSFD  601 (664)
Q Consensus       531 --------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~  601 (664)
                              ...+.+||.......+.++||||||+++|||+||+.||..... ...+.........          ....+
T Consensus       155 ~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~----------~~~~~  224 (264)
T cd06623         155 DQCNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQPSFFELMQAICDGP----------PPSLP  224 (264)
T ss_pred             CcccceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccccccCHHHHHHHHhcCC----------CCCCC
Confidence                    2234567877777788999999999999999999999953321 2222222222110          01112


Q ss_pred             HH-HHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          602 EE-QLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       602 ~~-~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      .. .+..+.+++.+||+.+|++||++.++++.
T Consensus       225 ~~~~~~~l~~li~~~l~~~p~~R~~~~~ll~~  256 (264)
T cd06623         225 AEEFSPEFRDFISACLQKDPKKRPSAAELLQH  256 (264)
T ss_pred             cccCCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence            22 34678999999999999999999999873

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=7.6e-32  Score=274.07  Aligned_cols=242  Identities=16%  Similarity=0.165  Sum_probs=181.3

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHH-hccCCCcccceEEEEecCCCceeEEEEE
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTL-SKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l-~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.||+|+||.||+|... +++.+|+|.+.......  ......+..|..++ ...+|+|++++++++...+  ..++|+|
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~--~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~--~~~lv~e   77 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIA--KNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKD--YLYLVME   77 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhH--HHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCC--eEEEEEe
Confidence            45899999999999864 58899999886432211  12223455555544 4558999999999998776  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|+|.+++..  ...+++..+.+++.+++.||.|||+.+  ++||||+|+||++++++.+||+|||+++....    
T Consensus        78 ~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~lH~~~--i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~  153 (260)
T cd05611          78 YLNGGDCASLIKT--LGGLPEDWAKQYIAEVVLGVEDLHQRG--IIHRDIKPENLLIDQTGHLKLTDFGLSRNGLENKKF  153 (260)
T ss_pred             ccCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHeEECCCCcEEEeecccceeccccccC
Confidence            9999999999863  346888999999999999999999998  99999999999999999999999998875432    


Q ss_pred             -hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHH
Q 006019          530 -AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETL  608 (664)
Q Consensus       530 -~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l  608 (664)
                       ....+.+||......++.++||||||+++|||+||+.||...  ...+.............    .   ......+..+
T Consensus       154 ~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~--~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~  224 (260)
T cd05611         154 VGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAE--TPDAVFDNILSRRINWP----E---EVKEFCSPEA  224 (260)
T ss_pred             CCCcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCC--CHHHHHHHHHhcccCCC----C---cccccCCHHH
Confidence             122345677766666889999999999999999999999432  22333322222111100    0   0111234568


Q ss_pred             HHHHHHhccCCCCCCCCHHHHHHHHH
Q 006019          609 GELIKSCVRADPEKRPTMRDIAAILR  634 (664)
Q Consensus       609 ~~l~~~Cl~~~P~~RPs~~ev~~~L~  634 (664)
                      .+++.+||+.+|++||++.++.+.|.
T Consensus       225 ~~~i~~~l~~~p~~R~~~~~~~~~l~  250 (260)
T cd05611         225 VDLINRLLCMDPAKRLGANGYQEIKS  250 (260)
T ss_pred             HHHHHHHccCCHHHccCCCcHHHHHc
Confidence            99999999999999998766655443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.98  E-value=4.7e-32  Score=280.96  Aligned_cols=250  Identities=17%  Similarity=0.209  Sum_probs=182.6

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcccceEEEEecCCC---cee
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEP---FTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~---~~~  448 (664)
                      +.+.||+|+||.||+|... ++..||+|.+......   ......+.+|++++++++ |+||+++++++...+.   ...
T Consensus         5 ~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~---~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~   81 (295)
T cd07837           5 KLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDE---EGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPSL   81 (295)
T ss_pred             EeeEecccCCeEEEEEEECCCCcEEEEEeehhhccc---cCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCceE
Confidence            3478999999999999965 6889999987654322   123357889999999995 6999999999876542   126


Q ss_pred             EEEEEecCCCChhhhhcccC---CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecC-CCceEecccCch
Q 006019          449 MMVFEYAPNGTLFEHIHIKE---SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE-DYAAKLSDLSFW  524 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~---~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~-~~~~kl~DfGla  524 (664)
                      ++||||+++ +|.+++....   ...+++.....++.+|+.||+|||+.+  ++||||||+||+++. ++.+||+|||++
T Consensus        82 ~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~--i~H~dl~~~nil~~~~~~~~kl~dfg~~  158 (295)
T cd07837          82 YLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHG--VMHRDLKPQNLLVDKQKGLLKIADLGLG  158 (295)
T ss_pred             EEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeecCCChHHEEEecCCCeEEEeecccc
Confidence            899999985 8988875432   346899999999999999999999998  999999999999998 899999999998


Q ss_pred             hhhhhh---------hhhcccccccC-CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccC
Q 006019          525 NEIAMA---------EMAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD  594 (664)
Q Consensus       525 ~~~~~~---------~~~~~~pe~~~-~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d  594 (664)
                      +.....         ...+.+||... ...++.++|||||||++|||+||+.||.... ...+. ...............
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~  236 (295)
T cd07837         159 RAFSIPVKSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDS-ELQQL-LHIFKLLGTPTEQVW  236 (295)
T ss_pred             eecCCCccccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCC-HHHHH-HHHHHHhCCCChhhC
Confidence            754321         22345677554 3457889999999999999999999985322 22221 111111000000000


Q ss_pred             ------------CC-----CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          595 ------------PT-----LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       595 ------------~~-----~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                                  +.     .....+....++.+++.+||+.+|++||++.|++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~  290 (295)
T cd07837         237 PGVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALT  290 (295)
T ss_pred             cchhhccchhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCCHHHHhc
Confidence                        00     00011223466889999999999999999998875

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.98  E-value=7e-32  Score=277.64  Aligned_cols=249  Identities=18%  Similarity=0.181  Sum_probs=181.8

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.+.||+|+||.||+|... ++..+|+|++......    .......+|+.++.++. |+|++++++++.+......++|
T Consensus         3 ~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~----~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv   78 (282)
T cd07831           3 ILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKS----LEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALV   78 (282)
T ss_pred             eEeeccccccceEEEEEEcCCCcEEEEEEehhccCC----chhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEE
Confidence            3478999999999999964 6889999987643221    12234567899999885 9999999999987622267999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh-
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  530 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~-  530 (664)
                      +||++ |+|.+++... ...++|..+..++.+++.||+|||+.+  ++||||||+||+++. +.+||+|||+++..... 
T Consensus        79 ~e~~~-~~l~~~l~~~-~~~~~~~~~~~~~~qi~~~L~~LH~~~--i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~~~  153 (282)
T cd07831          79 FELMD-MNLYELIKGR-KRPLPEKRVKSYMYQLLKSLDHMHRNG--IFHRDIKPENILIKD-DILKLADFGSCRGIYSKP  153 (282)
T ss_pred             EecCC-ccHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHCC--ceecccCHHHEEEcC-CCeEEEecccccccccCC
Confidence            99997 5888887632 356899999999999999999999998  999999999999999 99999999998765321 


Q ss_pred             -------hhhccccccc-CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCC-ChHHHHHHHhcCCC----------CCcc
Q 006019          531 -------EMAATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG-SLEDWAADYLSGVQ----------PLQQ  591 (664)
Q Consensus       531 -------~~~~~~pe~~-~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~-~~~~~~~~~~~~~~----------~~~~  591 (664)
                             ...+.+||.. .....+.++|||||||++|||++|+.||...+. +...+.........          ....
T Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (282)
T cd07831         154 PYTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRKSRHMN  233 (282)
T ss_pred             CcCCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCHHHHHHHHHHHcCCCCHHHHHhhccccccc
Confidence                   2234567754 345578899999999999999999999953221 11111111110000          0000


Q ss_pred             ccCCC-----CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          592 FVDPT-----LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       592 ~~d~~-----~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ...+.     +.......+..+.+++.+||+.+|++||++.++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~  278 (282)
T cd07831         234 YNFPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALR  278 (282)
T ss_pred             ccCcccccccHHHHcccccHHHHHHHHHHhccCcccccCHHHHhh
Confidence            00000     00111234578999999999999999999999875

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=7.8e-32  Score=275.82  Aligned_cols=240  Identities=19%  Similarity=0.271  Sum_probs=184.6

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCC----Cce
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEE----PFT  447 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~----~~~  447 (664)
                      +.+.||+|+||.||+|... ++..+++|.+....      ...++|.+|+++++++ +|+||+++++++....    ...
T Consensus        10 ~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~------~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~   83 (275)
T cd06608          10 LVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIE------DEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDDQ   83 (275)
T ss_pred             heeeecCCCCeEEEEEEECCCCcEEEEEEEecCc------hhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcceE
Confidence            3478999999999999975 57889999876432      1346799999999999 6999999999997643    224


Q ss_pred             eEEEEEecCCCChhhhhcccC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchh
Q 006019          448 RMMVFEYAPNGTLFEHIHIKE--SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN  525 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~~--~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~  525 (664)
                      .++||||+++++|.++++...  ...+++..+..++.+++.||+|||+.+  ++|+||+|+||++++++.+||+|||++.
T Consensus        84 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~--i~H~~l~p~ni~~~~~~~~~l~d~~~~~  161 (275)
T cd06608          84 LWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENK--VIHRDIKGQNILLTKNAEVKLVDFGVSA  161 (275)
T ss_pred             EEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcCC--cccCCCCHHHEEEccCCeEEECCCccce
Confidence            789999999999999886432  467899999999999999999999998  9999999999999999999999999876


Q ss_pred             hhhhh---------hhhcccccccC-----CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCcc
Q 006019          526 EIAMA---------EMAATSKKLSS-----APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQ  591 (664)
Q Consensus       526 ~~~~~---------~~~~~~pe~~~-----~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~  591 (664)
                      .....         ...+.+||...     ...++.++|||||||+++||+||+.||...  .............  .  
T Consensus       162 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~--~~~~~~~~~~~~~--~--  235 (275)
T cd06608         162 QLDSTLGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDM--HPMRALFKIPRNP--P--  235 (275)
T ss_pred             ecccchhhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCcccc--chHHHHHHhhccC--C--
Confidence            54221         12345666543     234678999999999999999999999422  1111111111110  0  


Q ss_pred             ccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          592 FVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       592 ~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                         +.. ..+......+.+++.+||+.||++||++.++++
T Consensus       236 ---~~~-~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~  271 (275)
T cd06608         236 ---PTL-KSPENWSKKFNDFISECLIKNYEQRPFMEELLE  271 (275)
T ss_pred             ---CCC-CchhhcCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence               111 112234567889999999999999999999875

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>PTZ00284 protein kinase; Provisional

Probab=99.98  E-value=4.7e-32  Score=299.24  Aligned_cols=244  Identities=16%  Similarity=0.213  Sum_probs=176.1

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCC------CcccceEEEEecCCCc
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH------KNFVNLIGFCEEEEPF  446 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H------~niv~l~g~~~~~~~~  446 (664)
                      +.+.||+|+||.||+|... .+..||||++....      ...+++..|++++.+++|      .+++++++++..... 
T Consensus       133 i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~------~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~~~~-  205 (467)
T PTZ00284        133 ILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVP------KYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQNETG-  205 (467)
T ss_pred             EEEEEEeccCEEEEEEEEcCCCeEEEEEEEecch------hhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEcCCc-
Confidence            3478999999999999864 57889999985321      123455667777777654      458889998876442 


Q ss_pred             eeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEEeCcCCCCeEecCCC-----------
Q 006019          447 TRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDY-----------  514 (664)
Q Consensus       447 ~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~-~~~~ivHrDLk~~NILld~~~-----------  514 (664)
                      ..++|||++ +++|.+++..  ...+++.....|+.||+.||+|||+ ++  ||||||||+|||++.++           
T Consensus       206 ~~~iv~~~~-g~~l~~~l~~--~~~l~~~~~~~i~~qi~~aL~yLH~~~g--IiHrDlKP~NILl~~~~~~~~~~~~~~~  280 (467)
T PTZ00284        206 HMCIVMPKY-GPCLLDWIMK--HGPFSHRHLAQIIFQTGVALDYFHTELH--LMHTDLKPENILMETSDTVVDPVTNRAL  280 (467)
T ss_pred             eEEEEEecc-CCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHhcCC--eecCCCCHHHEEEecCCccccccccccc
Confidence            578999988 6789888853  3569999999999999999999997 58  99999999999998765           


Q ss_pred             -----ceEecccCchhhhhh------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHh
Q 006019          515 -----AAKLSDLSFWNEIAM------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYL  583 (664)
Q Consensus       515 -----~~kl~DfGla~~~~~------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~  583 (664)
                           .+||+|||.+.....      ....+.+||...+..++.++|||||||++|||+||+.||.....  .+....+.
T Consensus       281 ~~~~~~vkl~DfG~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~--~~~~~~i~  358 (467)
T PTZ00284        281 PPDPCRVRICDLGGCCDERHSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDTHDN--LEHLHLME  358 (467)
T ss_pred             CCCCceEEECCCCccccCccccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCh--HHHHHHHH
Confidence                 499999998754321      23456788888888899999999999999999999999953221  11111000


Q ss_pred             c-----------------------CCCCCccccCCCC----C---CC-CHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          584 S-----------------------GVQPLQQFVDPTL----S---SF-DEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       584 ~-----------------------~~~~~~~~~d~~~----~---~~-~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .                       .........++..    .   .. .......+.+|+.+|++.||++|||++|+++
T Consensus       359 ~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~ta~e~L~  437 (467)
T PTZ00284        359 KTLGRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPVREVIRDDLLCDLIYGLLHYDRQKRLNARQMTT  437 (467)
T ss_pred             HHcCCCCHHHHhhccchhHHHHhhhcccccccCCHHHHHhhhcccchhhhhchHHHHHHHHHhCCcChhhCCCHHHHhc
Confidence            0                       0000000000000    0   00 0011245779999999999999999999986

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.98  E-value=9.5e-32  Score=278.25  Aligned_cols=246  Identities=17%  Similarity=0.204  Sum_probs=179.9

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||+|... ++..+++|.+.......    ....+.+|++++++++|+||+++.+++...+  ..++|+|
T Consensus        10 ~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~----~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~--~~~lv~e   83 (291)
T cd07870          10 LEKLGEGSYATVYKGISRINGQLVALKVISMKTEEG----VPFTAIREASLLKGLKHANIVLLHDIIHTKE--TLTFVFE   83 (291)
T ss_pred             EEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCC----CcHHHHHHHHHHHhcCCCCEeEEEEEEecCC--eEEEEEe
Confidence            478999999999999864 68899999986543221    2346788999999999999999999998766  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+. ++|.+++... ...+.+.....++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++....    
T Consensus        84 ~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~~L~~lH~~~--i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~  159 (291)
T cd07870          84 YMH-TDLAQYMIQH-PGGLHPYNVRLFMFQLLRGLAYIHGQH--ILHRDLKPQNLLISYLGELKLADFGLARAKSIPSQT  159 (291)
T ss_pred             ccc-CCHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCChHHEEEcCCCcEEEeccccccccCCCCCC
Confidence            996 6887776432 345788888999999999999999998  99999999999999999999999999875421    


Q ss_pred             -----hhhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCC-----------CCccc
Q 006019          530 -----AEMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-----------PLQQF  592 (664)
Q Consensus       530 -----~~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~-----------~~~~~  592 (664)
                           ....+.+||.... ..++.++|||||||++|||+||+.||............ ......           .....
T Consensus       160 ~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  238 (291)
T cd07870         160 YSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVSDVFEQLEK-IWTVLGVPTEDTWPGVSKLPNY  238 (291)
T ss_pred             CCCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHH-HHHHcCCCChhhhhhhhhcccc
Confidence                 1223456776543 34678899999999999999999999533221111111 100000           00000


Q ss_pred             cCC--------CCCCC--CHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          593 VDP--------TLSSF--DEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       593 ~d~--------~~~~~--~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ...        .....  .......+.+++.+|++.||++|||+.|++.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dp~~R~t~~~~l~  287 (291)
T cd07870         239 KPEWFLPCKPQQLRVVWKRLSRPPKAEDLASQMLMMFPKDRISAQDALL  287 (291)
T ss_pred             cchhccccCCcchhhhccccCCChHHHHHHHHHhCcCcccCcCHHHHhc
Confidence            000        00000  0011346789999999999999999998864

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.98  E-value=2.4e-31  Score=269.18  Aligned_cols=240  Identities=21%  Similarity=0.294  Sum_probs=190.9

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|++|.||+|... ++..+++|.+......   ....+.+.+|++.+++++|+||+++++++........++|+|
T Consensus         5 ~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e   81 (260)
T cd06606           5 GELLGRGSFGSVYLALDKDTGELMAVKSVELSGDS---EEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFLE   81 (260)
T ss_pred             eeEeeecCceEEEEEEECCCCcEEEEEEeeccccc---hHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEEE
Confidence            368999999999999976 6889999988654422   234578999999999999999999999998762126799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhhh--
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE--  531 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~~--  531 (664)
                      |+++++|.+++...  ..+++..+..++.++++|++|||+.+  ++|+||+|+||+++.++.++|+|||.+.......  
T Consensus        82 ~~~~~~L~~~~~~~--~~~~~~~~~~~~~~l~~~l~~lh~~~--~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~  157 (260)
T cd06606          82 YVSGGSLSSLLKKF--GKLPEPVIRKYTRQILEGLAYLHSNG--IVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETG  157 (260)
T ss_pred             ecCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCCHHHEEEcCCCCEEEcccccEEeccccccc
Confidence            99999999998643  37999999999999999999999988  9999999999999999999999999877654322  


Q ss_pred             ---------hhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          532 ---------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       532 ---------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                               ..+.+||.......+.++||||||++++||++|+.||.... ............         ......+.
T Consensus       158 ~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~-~~~~~~~~~~~~---------~~~~~~~~  227 (260)
T cd06606         158 EGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELG-NPMAALYKIGSS---------GEPPEIPE  227 (260)
T ss_pred             ccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC-chHHHHHhcccc---------CCCcCCCc
Confidence                     23346777776778999999999999999999999995433 112211111110         01112233


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          603 EQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .....+.+++.+|++.+|++||++.++++
T Consensus       228 ~~~~~l~~~i~~~l~~~p~~Rp~~~~ll~  256 (260)
T cd06606         228 HLSEEAKDFLRKCLRRDPKKRPTADELLQ  256 (260)
T ss_pred             ccCHHHHHHHHHhCcCChhhCCCHHHHhh
Confidence            33567999999999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.98  E-value=1.4e-31  Score=277.80  Aligned_cols=240  Identities=18%  Similarity=0.276  Sum_probs=181.0

Q ss_pred             hhcccccCCCeEEEEEEECC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.+.||+|+||.||+|...+ +..+|||.+.....    .....++..|+.++.+.+ |+||++++++|.+..  ..++|
T Consensus        19 ~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~----~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~--~~~~v   92 (296)
T cd06618          19 NLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGN----KEENKRILMDLDVVLKSHDCPYIVKCYGYFITDS--DVFIC   92 (296)
T ss_pred             eeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCC----hHHHHHHHHHHHHHHhccCCCchHhhheeeecCC--eEEEE
Confidence            45889999999999999865 88999999864332    123456777887777775 999999999998876  67999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  530 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~-~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~  530 (664)
                      |||++ ++|.++... ....+++..+.+++.+++.|++|||+ ++  ++||||+|+||++++++.+||+|||++......
T Consensus        93 ~e~~~-~~l~~l~~~-~~~~l~~~~~~~i~~~i~~~l~~lH~~~~--i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~~  168 (296)
T cd06618          93 MELMS-TCLDKLLKR-IQGPIPEDILGKMTVAIVKALHYLKEKHG--VIHRDVKPSNILLDASGNVKLCDFGISGRLVDS  168 (296)
T ss_pred             eeccC-cCHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhhCC--EecCCCcHHHEEEcCCCCEEECccccchhccCC
Confidence            99985 467666542 23478999999999999999999997 56  999999999999999999999999998765321


Q ss_pred             --------hhhcccccccCCC----CCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 006019          531 --------EMAATSKKLSSAP----SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       531 --------~~~~~~pe~~~~~----~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                              ...+.+||.....    .++.++||||||+++|||++|+.||...... .+...........       ...
T Consensus       169 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~-~~~~~~~~~~~~~-------~~~  240 (296)
T cd06618         169 KAKTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCKTE-FEVLTKILQEEPP-------SLP  240 (296)
T ss_pred             CcccCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcchhH-HHHHHHHhcCCCC-------CCC
Confidence                    1234567766543    3788999999999999999999999432211 2222222222110       010


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                       .......++.+++.+||+.||++||++.++++.
T Consensus       241 -~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~  273 (296)
T cd06618         241 -PNEGFSPDFCSFVDLCLTKDHRKRPKYRELLQH  273 (296)
T ss_pred             -CCCCCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence             011233568999999999999999999998765

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.98  E-value=1.2e-31  Score=276.36  Aligned_cols=249  Identities=18%  Similarity=0.213  Sum_probs=185.0

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. ++..+++|.+......   ......+.+|++++++++|+|++++++++........++|+
T Consensus         3 ~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~   79 (287)
T cd07840           3 KIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEK---EGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVF   79 (287)
T ss_pred             eeEEeccCCCeEEEEEEECCCCeEEEEEEEeccccc---ccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEe
Confidence            3467999999999999975 4889999999765311   22346788999999999999999999999876212679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++ +|.+++... ...+++..+..++.+++.||+|||+.+  ++|+||||+||++++++.+||+|||++......  
T Consensus        80 e~~~~-~l~~~~~~~-~~~~~~~~~~~i~~~i~~al~~LH~~~--~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~  155 (287)
T cd07840          80 EYMDH-DLTGLLDSP-EVKFTESQIKCYMKQLLEGLQYLHSNG--ILHRDIKGSNILINNDGVLKLADFGLARPYTKRNS  155 (287)
T ss_pred             ccccc-cHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHHCC--ceeccCcHHHeEEcCCCCEEEccccceeeccCCCc
Confidence            99975 898887533 257899999999999999999999988  999999999999999999999999998766432  


Q ss_pred             --------hhhcccccccC-CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCC-----CCccccC--
Q 006019          531 --------EMAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-----PLQQFVD--  594 (664)
Q Consensus       531 --------~~~~~~pe~~~-~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~-----~~~~~~d--  594 (664)
                              ...+.+||... ...++.++||||||+++|||+||+.||....  ..+..........     ......+  
T Consensus       156 ~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (287)
T cd07840         156 ADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGST--ELEQLEKIFELCGSPTDENWPGVSKLP  233 (287)
T ss_pred             ccccccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHHHhCCCchhhccccccch
Confidence                    12245677543 3356889999999999999999999995332  1111111111000     0000000  


Q ss_pred             ------CCC------CC-CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          595 ------PTL------SS-FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       595 ------~~~------~~-~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                            +..      .. +...+...+.+++.+||+.+|++||+++++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  283 (287)
T cd07840         234 WFENLKPKKPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISADQALQ  283 (287)
T ss_pred             hhhhccccccchhHHHHHhcccCCHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence                  000      00 00112467889999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.98  E-value=7.5e-32  Score=277.64  Aligned_cols=247  Identities=20%  Similarity=0.258  Sum_probs=183.9

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.+.||+|+||.||+|+.. ++..+++|++......    .......+|+..+++++ |+|++++++++...+  ..++|
T Consensus         3 ~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~----~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~--~~~lv   76 (283)
T cd07830           3 VIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYS----WEECMNLREVKSLRKLNEHPNIVKLKEVFREND--ELYFV   76 (283)
T ss_pred             eheeeccCCceEEEEEEECCCCcEEEEEEehhhccc----hhHHHHHHHHHHHHhccCCCCchhHHHHhhcCC--cEEEE
Confidence            4578999999999999975 4788999987643321    12234567999999999 999999999998866  67999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh-
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  530 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~-  530 (664)
                      |||+ +|+|.++++......+++..+..++.+++.+|.|||+++  ++|+||+|+||++++++.++|+|||+++..... 
T Consensus        77 ~e~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~--i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~  153 (283)
T cd07830          77 FEYM-EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKHG--FFHRDLKPENLLVSGPEVVKIADFGLAREIRSRP  153 (283)
T ss_pred             EecC-CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCChhhEEEcCCCCEEEeecccceeccCCC
Confidence            9999 889999887555567899999999999999999999998  999999999999999999999999998765321 


Q ss_pred             -------hhhccccccc-CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHh---cCC------------C
Q 006019          531 -------EMAATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYL---SGV------------Q  587 (664)
Q Consensus       531 -------~~~~~~pe~~-~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~---~~~------------~  587 (664)
                             ...+.+||.. .....+.++||||||+++|||+||+.||.....  .+......   ...            .
T Consensus       154 ~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (283)
T cd07830         154 PYTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSE--IDQLYKICSVLGTPTKQDWPEGYKLAS  231 (283)
T ss_pred             CcCCCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCCCh--HHHHHHHHHhcCCCChhhhhhHhhhhc
Confidence                   1234567754 344578899999999999999999999843221  11111100   000            0


Q ss_pred             CCccccCC----CCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          588 PLQQFVDP----TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       588 ~~~~~~d~----~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .....+..    .+....+.....+.+++.+||+.+|++||+++|++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~  279 (283)
T cd07830         232 KLGFRFPQFAPTSLHQLIPNASPEAIDLIKDMLRWDPKKRPTASQALQ  279 (283)
T ss_pred             cccccccccccccHHHHcccCCHHHHHHHHHhcccCcccCCCHHHHhh
Confidence            00000000    000001112356889999999999999999999875

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.98  E-value=1.2e-31  Score=280.06  Aligned_cols=249  Identities=17%  Similarity=0.186  Sum_probs=184.3

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|... +|..||+|.+.......   .....+.+|++++++++|+||+++++++.+......++||
T Consensus        11 ~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~---~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~   87 (309)
T cd07845          11 KLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERD---GIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIFLVM   87 (309)
T ss_pred             EeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCC---CCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEEEEE
Confidence            3478999999999999974 58999999987543322   1223567899999999999999999998765433579999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+.+ +|.+++... ...+++..+..++.+++.|++|||+.+  ++||||||+||++++++.+||+|||+++.....  
T Consensus        88 e~~~~-~l~~~l~~~-~~~l~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~~~~~  163 (309)
T cd07845          88 EYCEQ-DLASLLDNM-PTPFSESQVKCLMLQLLRGLQYLHENF--IIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAK  163 (309)
T ss_pred             ecCCC-CHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEECCCCCEEECccceeeecCCccC
Confidence            99974 888887532 356899999999999999999999999  999999999999999999999999998765422  


Q ss_pred             -------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCC-cc----------
Q 006019          531 -------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL-QQ----------  591 (664)
Q Consensus       531 -------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~-~~----------  591 (664)
                             ...+.+||...+ ..++.++|||||||++|||++|+.||..  .+..+............ ..          
T Consensus       164 ~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (309)
T cd07845         164 PMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPG--KSEIEQLDLIIQLLGTPNESIWPGFSDLPL  241 (309)
T ss_pred             CCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHHHhcCCCChhhchhhhcccc
Confidence                   122456776543 4578899999999999999999999942  22222222222110000 00          


Q ss_pred             ---cc-C-CCCCC---CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          592 ---FV-D-PTLSS---FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       592 ---~~-d-~~~~~---~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                         .. . .....   ........+.+++.+|++.||++||++.+++.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~~il~  289 (309)
T cd07845         242 VGKFTLPKQPYNNLKHKFPWLSEAGLRLLNFLLMYDPKKRATAEEALE  289 (309)
T ss_pred             cccccccCCCCCchHHhccccCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence               00 0 00000   00112456789999999999999999999886

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.98  E-value=1e-31  Score=276.73  Aligned_cols=246  Identities=19%  Similarity=0.269  Sum_probs=184.3

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||.|++|.||+|+.. +|..+|+|.+......    .....+.+|++++++++|+||+++++++.+.+  ..++||
T Consensus         4 ~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   77 (284)
T cd07836           4 QLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEE----GTPSTAIREISLMKELKHENIVRLHDVIHTEN--KLMLVF   77 (284)
T ss_pred             EeeeeccCCceEEEEEEECCCCeEEEEEEecccccc----cchHHHHHHHHHHHhhcCCCEeeeeeeEeeCC--cEEEEE
Confidence            3478999999999999975 5889999988754322    12356778999999999999999999998877  679999


Q ss_pred             EecCCCChhhhhcccC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh-
Q 006019          453 EYAPNGTLFEHIHIKE-SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~-~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~-  530 (664)
                      ||+++ +|.+++.... ...+++..+.+++.+++.||+|||+.+  ++||||||+||++++++.+|++|||+++..... 
T Consensus        78 e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~  154 (284)
T cd07836          78 EYMDK-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENR--VLHRDLKPQNLLINKRGELKLADFGLARAFGIPV  154 (284)
T ss_pred             ecCCc-cHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHCC--eeeCCCCHHHEEECCCCcEEEeecchhhhhcCCc
Confidence            99985 8888875432 346899999999999999999999998  999999999999999999999999998754321 


Q ss_pred             --------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCC-----------CCCc
Q 006019          531 --------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV-----------QPLQ  590 (664)
Q Consensus       531 --------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~-----------~~~~  590 (664)
                              ...+.+||.... ..++.++|||||||++|||+||+.||....  ..+.........           ....
T Consensus       155 ~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (284)
T cd07836         155 NTFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTN--NEDQLLKIFRIMGTPTESTWPGISQLP  232 (284)
T ss_pred             cccccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC--cHHHHHHHHHHhCCCChhhHHHHhcCc
Confidence                    123456775533 456889999999999999999999985332  111111111000           0000


Q ss_pred             cccCCCCC--------CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          591 QFVDPTLS--------SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       591 ~~~d~~~~--------~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .+ .....        ...+.....+.+++.+|++.||++||++.++++
T Consensus       233 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~  280 (284)
T cd07836         233 EY-KPTFPRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDALQ  280 (284)
T ss_pred             hh-cccccCCChHHHHHHhhhcCcHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            00 00000        011223456889999999999999999999875

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.98  E-value=1.1e-31  Score=278.09  Aligned_cols=248  Identities=18%  Similarity=0.225  Sum_probs=182.2

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|++|.||+|+.. +++.+++|.+......   ....+.+.+|++++++++|+||+++++++...+  ..++||
T Consensus         6 ~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   80 (294)
T PLN00009          6 KVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQED---EGVPSTAIREISLLKEMQHGNIVRLQDVVHSEK--RLYLVF   80 (294)
T ss_pred             EEEEecCCCCEEEEEEEecCCCcEEEEEehhhcccc---ccchHHHHHHHHHHHhccCCCEeeEEEEEecCC--eEEEEE
Confidence            3478999999999999965 6889999988643321   123457889999999999999999999998776  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecC-CCceEecccCchhhhhhh-
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE-DYAAKLSDLSFWNEIAMA-  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~-~~~~kl~DfGla~~~~~~-  530 (664)
                      ||++ ++|.+++.......+++.....++.+++.||+|||+.+  ++||||+|+||+++. ++.+||+|||+++..... 
T Consensus        81 e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~--i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~~  157 (294)
T PLN00009         81 EYLD-LDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSHR--VLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPV  157 (294)
T ss_pred             eccc-ccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhCC--eeCCCCCcceEEEECCCCEEEEcccccccccCCCc
Confidence            9996 58888775444445688888899999999999999988  999999999999985 567999999998754321 


Q ss_pred             --------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcC-CCCCccc--------
Q 006019          531 --------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG-VQPLQQF--------  592 (664)
Q Consensus       531 --------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~-~~~~~~~--------  592 (664)
                              ...+.+||+..+ ..++.++|||||||++|||+||+.||.... ....... .... .......        
T Consensus       158 ~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~  235 (294)
T PLN00009        158 RTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDS-EIDELFK-IFRILGTPNEETWPGVTSLP  235 (294)
T ss_pred             cccccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC-HHHHHHH-HHHHhCCCChhhccccccch
Confidence                    123456776543 457889999999999999999999995321 1111111 1100 0000000        


Q ss_pred             ---------cCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          593 ---------VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       593 ---------~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                               .........+....++.+++.+|++.+|++||++.++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~~l~  283 (294)
T PLN00009        236 DYKSAFPKWPPKDLATVVPTLEPAGVDLLSKMLRLDPSKRITARAALE  283 (294)
T ss_pred             hhhhhcccCCCCCHHHhCcCCChHHHHHHHHHccCChhhCcCHHHHhc
Confidence                     000000011223356889999999999999999999886

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.98  E-value=3.2e-31  Score=276.72  Aligned_cols=244  Identities=19%  Similarity=0.229  Sum_probs=186.2

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||+|+.. ++..+++|.+.......  ....+++.+|++++++++|+|++++++++....  ..++|+|
T Consensus        20 ~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~e   95 (308)
T cd06634          20 LREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQS--NEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREH--TAWLVME   95 (308)
T ss_pred             HHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccC--hHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCC--eeEEEEE
Confidence            467999999999999964 57889999886432221  234467889999999999999999999998876  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      |+. |+|.+.+... ...+++..+..++.+++.|+.|||+.+  ++||||||+||+++.++.+||+|||++......   
T Consensus        96 ~~~-~~l~~~~~~~-~~~l~~~~~~~~~~~l~~~l~~LH~~~--i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~  171 (308)
T cd06634          96 YCL-GSASDLLEVH-KKPLQEVEIAAVTHGALQGLAYLHSHN--MIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANXF  171 (308)
T ss_pred             ccC-CCHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHhEEECCCCcEEECCcccceeecCcccc
Confidence            996 6888776532 345899999999999999999999988  999999999999999999999999998765322   


Q ss_pred             --hhhcccccccC---CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 006019          531 --EMAATSKKLSS---APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  605 (664)
Q Consensus       531 --~~~~~~pe~~~---~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  605 (664)
                        ...+.+||...   ....+.++|||||||++|||+||+.||....  ..+..........       +..  ......
T Consensus       172 ~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~--~~~~~~~~~~~~~-------~~~--~~~~~~  240 (308)
T cd06634         172 VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN--AMSALYHIAQNES-------PAL--QSGHWS  240 (308)
T ss_pred             cCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCcccc--HHHHHHHHhhcCC-------CCc--Cccccc
Confidence              22345677642   3457889999999999999999999984321  1122222211110       000  112234


Q ss_pred             HHHHHHHHHhccCCCCCCCCHHHHHHHHHhhh
Q 006019          606 ETLGELIKSCVRADPEKRPTMRDIAAILREIT  637 (664)
Q Consensus       606 ~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~  637 (664)
                      ..+.+++.+||+.+|++||++.++++......
T Consensus       241 ~~~~~li~~cl~~~P~~Rp~~~~ll~~~~~~~  272 (308)
T cd06634         241 EYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLR  272 (308)
T ss_pred             HHHHHHHHHHhhCCcccCCCHHHHhhCccccc
Confidence            56889999999999999999999998755444

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.98  E-value=1.2e-31  Score=275.97  Aligned_cols=246  Identities=17%  Similarity=0.241  Sum_probs=186.5

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|++|.||+|... ++..+++|.+......   ......+.+|++++++++|+||+++++++...+  ..++|+|
T Consensus         4 ~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~~v~e   78 (283)
T cd05118           4 LGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFES---EGIPKTALREIKLLKELNHPNIIKLLDVFRHKG--DLYLVFE   78 (283)
T ss_pred             ceeeecCCCceEEEEEcCCCCcEEEEEEecccccc---chhHHHHHHHHHHHHHhcCCCcchHHHhhccCC--CEEEEEe
Confidence            467999999999999964 6888999988654322   134567889999999999999999999998776  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhhh--
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE--  531 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~~--  531 (664)
                      |+++ +|.+++... ...+++..+..++.+++.||+|||+.+  ++|+||||+||++++++.+||+|||.+.......  
T Consensus        79 ~~~~-~l~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~LH~~~--i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~~~  154 (283)
T cd05118          79 FMDT-DLYKLIKDR-QRGLPESLIKSYLYQLLQGLAFCHSHG--ILHRDLKPENLLINTEGVLKLADFGLARSFGSPVRP  154 (283)
T ss_pred             ccCC-CHHHHHHhh-cccCCHHHHHHHHHHHHHHHHHHHHCC--eeecCcCHHHEEECCCCcEEEeeeeeeEecCCCccc
Confidence            9975 888887643 357899999999999999999999998  9999999999999999999999999886553321  


Q ss_pred             -------hhcccccccCCC-CCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCC-----Cccc------
Q 006019          532 -------MAATSKKLSSAP-SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP-----LQQF------  592 (664)
Q Consensus       532 -------~~~~~pe~~~~~-~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~-----~~~~------  592 (664)
                             ..+.+||..... ..+.++||||||+++|||+||+.||...+ . .+...........     ....      
T Consensus       155 ~~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (283)
T cd05118         155 YTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKS-E-IDQLFKIFRTLGTPDPEVWPKFTSLARN  232 (283)
T ss_pred             ccCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCC-H-HHHHHHHHHHcCCCchHhcccchhhhhh
Confidence                   234467765554 67899999999999999999999984322 1 1111111110000     0000      


Q ss_pred             --------cCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          593 --------VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       593 --------~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                              .+.......+....++.+++.+||+.||.+||++.+++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~  279 (283)
T cd05118         233 YKFSFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQALA  279 (283)
T ss_pred             hhhhhccccccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHHHHhh
Confidence                    000011112345678999999999999999999999875

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.97  E-value=4.7e-32  Score=268.71  Aligned_cols=244  Identities=20%  Similarity=0.314  Sum_probs=193.1

Q ss_pred             hcccccCCCeEEEEEEECC------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          375 SNVIGSSPIGTVYKGTLSN------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~~------~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      ..++-+|.||.||+|.|++      .+.|-||.++...    .+.....|.+|.-++..+.|||+..+.|++.+... ..
T Consensus       289 ~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~A----S~iQv~~~L~es~lly~~sH~nll~V~~V~ie~~~-~P  363 (563)
T KOG1024|consen  289 SCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHA----SQIQVNLLLQESMLLYGASHPNLLSVLGVSIEDYA-TP  363 (563)
T ss_pred             hhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcc----cHHHHHHHHHHHHHHhcCcCCCccceeEEEeeccC-cc
Confidence            3678999999999997653      3455566554322    23345678899999999999999999999987553 57


Q ss_pred             EEEEEecCCCChhhhhccc------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccC
Q 006019          449 MMVFEYAPNGTLFEHIHIK------ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLS  522 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~------~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfG  522 (664)
                      +++|.|+.-|+|..+|..-      ..+.++-.+...+|.|++.|++|||..+  |||.||.++|+++|+...+||+|=.
T Consensus       364 ~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~~--ViHkDiAaRNCvIdd~LqVkltDsa  441 (563)
T KOG1024|consen  364 FVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNHG--VIHKDIAARNCVIDDQLQVKLTDSA  441 (563)
T ss_pred             eEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhcC--cccchhhhhcceehhheeEEeccch
Confidence            8999999999999999732      2345667788899999999999999999  9999999999999999999999999


Q ss_pred             chhhhhhhh-----------hhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCc
Q 006019          523 FWNEIAMAE-----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQ  590 (664)
Q Consensus       523 la~~~~~~~-----------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~  590 (664)
                      ++|.+-...           ..+.++|-.....++.++|||||||+||||+| |+.||.  ..+..+.. .++.+...  
T Consensus       442 LSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~Pya--eIDPfEm~-~ylkdGyR--  516 (563)
T KOG1024|consen  442 LSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYA--EIDPFEME-HYLKDGYR--  516 (563)
T ss_pred             hccccCcccccccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCcc--ccCHHHHH-HHHhccce--
Confidence            988764332           23445565566778999999999999999999 999993  33333333 33333222  


Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhh
Q 006019          591 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  637 (664)
Q Consensus       591 ~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~  637 (664)
                             ...|-+|+++++.+|.-||+..|++||++++++.-|.++-
T Consensus       517 -------laQP~NCPDeLf~vMacCWallpeeRPsf~Qlv~cLseF~  556 (563)
T KOG1024|consen  517 -------LAQPFNCPDELFTVMACCWALLPEERPSFSQLVICLSEFH  556 (563)
T ss_pred             -------ecCCCCCcHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHH
Confidence                   2345677889999999999999999999999999998864

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.97  E-value=3e-32  Score=258.42  Aligned_cols=241  Identities=23%  Similarity=0.357  Sum_probs=189.8

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCC---chhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeEE
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDW---PKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMM  450 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~---~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~l  450 (664)
                      +.+|.|..+.|-++..+ +|.+.|+|++........   .....++-.+|+++|+++ .||+|+.+..++..+.  ..++
T Consensus        23 eilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~s--F~Fl  100 (411)
T KOG0599|consen   23 EILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESDA--FVFL  100 (411)
T ss_pred             HHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCcc--hhhh
Confidence            67999999999998864 688999999976554332   234456678999999998 6999999999998876  6799


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  530 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~  530 (664)
                      |+|.|+.|.|+|+|.  +.-.++.....+|+.++..|++|||..+  ||||||||+|||+|+++++||+|||++..+..+
T Consensus       101 VFdl~prGELFDyLt--s~VtlSEK~tR~iMrqlfegVeylHa~~--IVHRDLKpENILlddn~~i~isDFGFa~~l~~G  176 (411)
T KOG0599|consen  101 VFDLMPRGELFDYLT--SKVTLSEKETRRIMRQLFEGVEYLHARN--IVHRDLKPENILLDDNMNIKISDFGFACQLEPG  176 (411)
T ss_pred             hhhhcccchHHHHhh--hheeecHHHHHHHHHHHHHHHHHHHHhh--hhhcccChhheeeccccceEEeccceeeccCCc
Confidence            999999999999996  4567899999999999999999999999  999999999999999999999999999887644


Q ss_pred             h--------hhccccccc------CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCC
Q 006019          531 E--------MAATSKKLS------SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  596 (664)
Q Consensus       531 ~--------~~~~~pe~~------~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  596 (664)
                      +        ..+.+||..      ..+.++.+.|+|+.||++|.|+.|..||....  ..-..+.++.+...   +-.|.
T Consensus       177 ekLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRk--QmlMLR~ImeGkyq---F~spe  251 (411)
T KOG0599|consen  177 EKLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHRK--QMLMLRMIMEGKYQ---FRSPE  251 (411)
T ss_pred             hhHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHHH--HHHHHHHHHhcccc---cCCcc
Confidence            3        223345432      45668999999999999999999999994210  11112222333221   12222


Q ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          597 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       597 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .    .+....+.+|+.+|++.||.+|.|++|+++
T Consensus       252 W----adis~~~KdLIsrlLqVdp~~Ritake~La  282 (411)
T KOG0599|consen  252 W----ADISATVKDLISRLLQVDPTKRITAKEALA  282 (411)
T ss_pred             h----hhccccHHHHHHHHHeeCchhcccHHHHhc
Confidence            2    223456889999999999999999999875

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.97  E-value=4.4e-31  Score=267.29  Aligned_cols=238  Identities=21%  Similarity=0.342  Sum_probs=191.4

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||.|+||.||++... ++..+++|++......   ....+++.+|++++++++|+|++++.+.+...+  ..++|+|
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~--~~~lv~e   79 (258)
T cd08215           5 IKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMS---EKEREDALNEVKILKKLNHPNIIKYYESFEEKG--KLCIVME   79 (258)
T ss_pred             EeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCC---hHHHHHHHHHHHHHHhcCCCChhheEEEEecCC--EEEEEEE
Confidence            467999999999999975 5889999998654322   244567899999999999999999999988776  6799999


Q ss_pred             ecCCCChhhhhcccC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh-
Q 006019          454 YAPNGTLFEHIHIKE--SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~--~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~-  530 (664)
                      |+++++|.++++...  ...+++.....++.+++.|++|||+.+  ++|+||+|+||++++++.++|+|||++...... 
T Consensus        80 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~--~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~  157 (258)
T cd08215          80 YADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRK--ILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTV  157 (258)
T ss_pred             ecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhCC--EecccCChHHeEEcCCCcEEECCccceeecccCc
Confidence            999999999987532  467999999999999999999999998  999999999999999999999999998765332 


Q ss_pred             --------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          531 --------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       531 --------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                              ...+.+||.......+.++||||||++++||++|+.||...  ...+.........          ....+.
T Consensus       158 ~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~--~~~~~~~~~~~~~----------~~~~~~  225 (258)
T cd08215         158 DLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGE--NLLELALKILKGQ----------YPPIPS  225 (258)
T ss_pred             ceecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCC--cHHHHHHHHhcCC----------CCCCCC
Confidence                    12345677666667889999999999999999999998432  2333333322211          111122


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          603 EQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .....+.+++.+||..+|++||++.++++
T Consensus       226 ~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~  254 (258)
T cd08215         226 QYSSELRNLVSSLLQKDPEERPSIAQILQ  254 (258)
T ss_pred             CCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence            33456889999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.97  E-value=3.9e-31  Score=278.54  Aligned_cols=243  Identities=21%  Similarity=0.302  Sum_probs=197.1

Q ss_pred             hhhhcccccCCCeEEEEEEECC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcccceEEEEecCCCceeE
Q 006019          372 EDFSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRM  449 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~~~  449 (664)
                      +++.+.||+|.||.||+++.+. |..+|+|.+.......  ......+.+|+++|+++. |||||.+.+++....  ..+
T Consensus        37 Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~--~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~--~~~  112 (382)
T KOG0032|consen   37 YELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRG--KEDREDVRREVAILQQLSGHPNIVQLKDAFEDPD--SVY  112 (382)
T ss_pred             EEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccc--cccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCC--eEE
Confidence            3455789999999999999765 9999999998765543  223467899999999998 999999999999887  789


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCC----CceEecccCchh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED----YAAKLSDLSFWN  525 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~----~~~kl~DfGla~  525 (664)
                      +|||++.+|.|++.+...   .++......++.+++.++.|||+.+  |+||||||+|+|+...    +.+|++|||+++
T Consensus       113 lvmEL~~GGeLfd~i~~~---~~sE~da~~~~~~il~av~~lH~~g--vvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~  187 (382)
T KOG0032|consen  113 LVMELCEGGELFDRIVKK---HYSERDAAGIIRQILEAVKYLHSLG--VVHRDLKPENLLLASKDEGSGRIKLIDFGLAK  187 (382)
T ss_pred             EEEEecCCchHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHhCC--ceeccCCHHHeeeccccCCCCcEEEeeCCCce
Confidence            999999999999998654   3999999999999999999999999  9999999999999744    479999999998


Q ss_pred             hhhhh--------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 006019          526 EIAMA--------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  597 (664)
Q Consensus       526 ~~~~~--------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  597 (664)
                      .....        +..+.+||......++.++||||.||++|.|++|..||..+....  ....+..+.-   .+.++..
T Consensus       188 ~~~~~~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~--~~~~i~~~~~---~f~~~~w  262 (382)
T KOG0032|consen  188 FIKPGERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFE--IFLAILRGDF---DFTSEPW  262 (382)
T ss_pred             EccCCceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhH--HHHHHHcCCC---CCCCCCc
Confidence            87652        234557888887889999999999999999999999996443221  1112332211   2222222


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          598 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       598 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                          +.....+.+++.+++..||.+|+++.++++.
T Consensus       263 ----~~is~~akd~i~~ll~~dp~~R~ta~~~L~H  293 (382)
T KOG0032|consen  263 ----DDISESAKDFIRKLLEFDPRKRLTAAQALQH  293 (382)
T ss_pred             ----cccCHHHHHHHHHhcccCcccCCCHHHHhcC
Confidence                2234678999999999999999999999884

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.97  E-value=2.3e-31  Score=269.52  Aligned_cols=239  Identities=23%  Similarity=0.308  Sum_probs=190.9

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||++... ++..+++|.+......   .....++.+|++++++++|+||+++++++.+..  ..++|+
T Consensus         4 ~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~~v~   78 (256)
T cd08530           4 VLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMS---QKEREDAVNEIRILASVNHPNIISYKEAFLDGN--KLCIVM   78 (256)
T ss_pred             EeeeecCCCceeEEEEEECCCCCEEEEEEEehhhcc---HHHHHHHHHHHHHHHhCCCCCchhhhhhhccCC--EEEEEe
Confidence            3478999999999999854 6788999988654322   233567889999999999999999999988776  779999


Q ss_pred             EecCCCChhhhhccc--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh
Q 006019          453 EYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~  530 (664)
                      ||+++++|.+++...  ....+++.....++.+++.|++|||+.+  ++|+||+|+||++++++.+|++|||+++.....
T Consensus        79 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~~--i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~  156 (256)
T cd08530          79 EYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQK--ILHRDLKSANILLVANDLVKIGDLGISKVLKKN  156 (256)
T ss_pred             hhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCC--cccCCCCcceEEEecCCcEEEeeccchhhhccC
Confidence            999999999988642  2356899999999999999999999998  999999999999999999999999998766432


Q ss_pred             -------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          531 -------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       531 -------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                             ...+.+||+.....++.++|+||||+++|||++|+.||...  +..+........          .....+..
T Consensus       157 ~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~--~~~~~~~~~~~~----------~~~~~~~~  224 (256)
T cd08530         157 MAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEAR--SMQDLRYKVQRG----------KYPPIPPI  224 (256)
T ss_pred             CcccccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHhcC----------CCCCCchh
Confidence                   22345677777777888999999999999999999999432  222222222111          11122234


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ...++.+++.+|++.+|++||++.++++
T Consensus       225 ~~~~~~~li~~~l~~~p~~Rp~~~~~l~  252 (256)
T cd08530         225 YSQDLQNFIRSMLQVKPKLRPNCDKILA  252 (256)
T ss_pred             hCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence            4567899999999999999999999876

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.97  E-value=3.4e-31  Score=272.34  Aligned_cols=237  Identities=15%  Similarity=0.185  Sum_probs=177.5

Q ss_pred             ccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHH---HHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          377 VIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKID---TLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       377 ~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~---~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      .||+|+||.||+|+. .+++.||+|.+.......  ......+..|..   .++...||||+++++++.+.+  ..++||
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~v~   76 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKM--KQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPD--KLSFIL   76 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeecccccc--chhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCC--EEEEEE
Confidence            489999999999986 458899999987543222  111223444443   444567999999999998776  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++|+|.+++.  ....+++..+..++.+++.|++|||+.+  ++||||||+||++++++.+||+|||+++....   
T Consensus        77 e~~~g~~L~~~l~--~~~~l~~~~~~~~~~ql~~~l~~lH~~~--i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~~~  152 (278)
T cd05606          77 DLMNGGDLHYHLS--QHGVFSEAEMRFYAAEIILGLEHMHNRF--VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKP  152 (278)
T ss_pred             ecCCCCcHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHCC--EEcCCCCHHHEEECCCCCEEEccCcCccccCccCC
Confidence            9999999998885  3456999999999999999999999988  99999999999999999999999999875432   


Q ss_pred             ----hhhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          530 ----AEMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       530 ----~~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                          ....+.+||.... ..++.++|||||||++|||++|+.||.................       .++.   .+...
T Consensus       153 ~~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~-------~~~~---~~~~~  222 (278)
T cd05606         153 HASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLT-------MAVE---LPDSF  222 (278)
T ss_pred             cCcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCccchHHHHHHhhc-------cCCC---CCCcC
Confidence                1233456776653 3578899999999999999999999954322111111111110       0111   12223


Q ss_pred             HHHHHHHHHHhccCCCCCCC-----CHHHHHH
Q 006019          605 LETLGELIKSCVRADPEKRP-----TMRDIAA  631 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RP-----s~~ev~~  631 (664)
                      ...+.+++.+|+..+|++||     ++.++++
T Consensus       223 s~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~  254 (278)
T cd05606         223 SPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE  254 (278)
T ss_pred             CHHHHHHHHHHhhcCHHhccCCCCCCHHHHHh
Confidence            45788999999999999999     8888874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.97  E-value=2.3e-31  Score=282.06  Aligned_cols=256  Identities=15%  Similarity=0.214  Sum_probs=186.6

Q ss_pred             cccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC----ceeEE
Q 006019          376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----FTRMM  450 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~----~~~~l  450 (664)
                      +.||+|+||.||+|+. .+|..+|+|++......   ......+.+|++++++++|+||+++++++.....    ...++
T Consensus        21 ~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~l   97 (342)
T cd07879          21 KQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQS---EIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQDFYL   97 (342)
T ss_pred             EEeeecCCeEEEEEEeCCCCcEEEEEEecCcccc---ccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCceEEE
Confidence            7899999999999996 46899999988643221   1234568899999999999999999999865431    14589


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  530 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~  530 (664)
                      |+||+.. +|.++..    ..+++.....++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++.....
T Consensus        98 v~e~~~~-~l~~~~~----~~~~~~~~~~~~~qi~~aL~~LH~~~--i~H~dlkp~NIll~~~~~~kL~dfg~~~~~~~~  170 (342)
T cd07879          98 VMPYMQT-DLQKIMG----HPLSEDKVQYLVYQMLCGLKYIHSAG--IIHRDLKPGNLAVNEDCELKILDFGLARHADAE  170 (342)
T ss_pred             Eeccccc-CHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEECCCCCEEEeeCCCCcCCCCC
Confidence            9999964 7766542    35889999999999999999999998  999999999999999999999999998765322


Q ss_pred             ------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCC-C------------Cc
Q 006019          531 ------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-P------------LQ  590 (664)
Q Consensus       531 ------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~-~------------~~  590 (664)
                            ...+.+||.... ..++.++|||||||++|||++|+.||....  ............. .            ..
T Consensus       171 ~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (342)
T cd07879         171 MTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKD--YLDQLTQILKVTGVPGPEFVQKLEDKAAK  248 (342)
T ss_pred             CCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHhcCCCCHHHHHHhcccchH
Confidence                  123456776544 457889999999999999999999995322  1111111111000 0            00


Q ss_pred             cc-------cCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH--HHhhhCCCCCC
Q 006019          591 QF-------VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI--LREITGITPDG  643 (664)
Q Consensus       591 ~~-------~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~--L~~i~~~~~~~  643 (664)
                      ..       ....+....+.....+.+++.+||+.||++||++.+++..  ++...+..++.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~e~l~h~~f~~~~~~~~~~  310 (342)
T cd07879         249 SYIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKRLTATEALEHPYFDSFRDADEET  310 (342)
T ss_pred             HHHhhcCCcccchHHHHhcCCCHHHHHHHHHHcCCChhhCcCHHHHhcCcchhhcccccccC
Confidence            00       0000000001123457899999999999999999999954  88877654444

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.97  E-value=2.7e-33  Score=268.46  Aligned_cols=231  Identities=20%  Similarity=0.300  Sum_probs=190.4

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.++||+|+||.||||.++ .|..+|+|.+.+..       ..+++.+|+.+|++++.|++|+++|.|....  ..++||
T Consensus        37 i~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~s-------DLQEIIKEISIMQQC~S~yVVKYYGSYFK~s--DLWIVM  107 (502)
T KOG0574|consen   37 IVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVDT-------DLQEIIKEISIMQQCKSKYVVKYYGSYFKHS--DLWIVM  107 (502)
T ss_pred             HHHHhcCCcchHHHHHHHhccCcEEEEEecCccc-------hHHHHHHHHHHHHHcCCchhhhhhhhhccCC--ceEeeh
Confidence            3478999999999999965 69999999987643       2578999999999999999999999987766  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      |||--|+..|.++.+ ...|+......|..+.++||+|||...  -+|||||+.||||+.+|.+|++|||.+..+...  
T Consensus       108 EYCGAGSiSDI~R~R-~K~L~E~EIs~iL~~TLKGL~YLH~~~--KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTMA  184 (502)
T KOG0574|consen  108 EYCGAGSISDIMRAR-RKPLSEQEISAVLRDTLKGLQYLHDLK--KIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTMA  184 (502)
T ss_pred             hhcCCCcHHHHHHHh-cCCccHHHHHHHHHHHHhHHHHHHHHH--HHHhhcccccEEEcccchhhhhhccccchhhhhHH
Confidence            999999999999754 467999999999999999999999977  799999999999999999999999998876422  


Q ss_pred             -------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCcccc-----CCCCC
Q 006019          531 -------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFV-----DPTLS  598 (664)
Q Consensus       531 -------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~~  598 (664)
                             ...+.+||....-.|..++||||+|+...||.-|+.||..-               .+++.++     .|..-
T Consensus       185 KRNTVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDI---------------HPMRAIFMIPT~PPPTF  249 (502)
T KOG0574|consen  185 KRNTVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDI---------------HPMRAIFMIPTKPPPTF  249 (502)
T ss_pred             hhCccccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCcccc---------------cccceeEeccCCCCCCC
Confidence                   23445666666666889999999999999999999999311               1111111     11111


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ..++....++.+++++|+.++|++|-|+-++++
T Consensus       250 ~KPE~WS~~F~DFi~~CLiK~PE~R~TA~~L~~  282 (502)
T KOG0574|consen  250 KKPEEWSSEFNDFIRSCLIKKPEERKTALRLCE  282 (502)
T ss_pred             CChHhhhhHHHHHHHHHhcCCHHHHHHHHHHhh
Confidence            246777889999999999999999999887765

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.97  E-value=1.5e-31  Score=269.64  Aligned_cols=237  Identities=20%  Similarity=0.330  Sum_probs=188.2

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|++|.||++... ++..+++|++.....     ...+.+.+|++++++++|+|++++++++...+  ..++++|
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-----~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~l~~e   77 (253)
T cd05122           5 LEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESK-----EKKEKIINEIQILKKCKHPNIVKYYGSYLKKD--ELWIVME   77 (253)
T ss_pred             eeeeccCCceEEEEEEECCCCcEEEEEEecccch-----hHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC--eEEEEEe
Confidence            468999999999999975 688899999865432     23568999999999999999999999998776  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhhh--
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE--  531 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~~--  531 (664)
                      |+++++|.+++... ...+++..+..++.+++.|++|||+.+  ++||||+|+||++++++.++|+|||.+.......  
T Consensus        78 ~~~~~~L~~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lh~~~--i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~  154 (253)
T cd05122          78 FCSGGSLKDLLKST-NQTLTESQIAYVCKELLKGLEYLHSNG--IIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKAR  154 (253)
T ss_pred             cCCCCcHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhcCC--EecCCCCHHHEEEccCCeEEEeeccccccccccccc
Confidence            99999999988643 257899999999999999999999988  9999999999999999999999999987664332  


Q ss_pred             ------hhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 006019          532 ------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  605 (664)
Q Consensus       532 ------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  605 (664)
                            ..+.+||+......+.++||||||++++||++|+.||....  ..+.......  ........      .....
T Consensus       155 ~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~--~~~~~~~~~~--~~~~~~~~------~~~~~  224 (253)
T cd05122         155 NTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELP--PMKALFKIAT--NGPPGLRN------PEKWS  224 (253)
T ss_pred             cceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCc--hHHHHHHHHh--cCCCCcCc------ccccC
Confidence                  23456777766678899999999999999999999984322  1121111111  11111111      11123


Q ss_pred             HHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          606 ETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       606 ~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ..+.+++.+||+.||++||++.++++
T Consensus       225 ~~~~~~i~~~l~~~p~~R~t~~~~l~  250 (253)
T cd05122         225 DEFKDFLKKCLQKNPEKRPTAEQLLK  250 (253)
T ss_pred             HHHHHHHHHHccCChhhCCCHHHHhc
Confidence            56889999999999999999999875

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.97  E-value=1.1e-31  Score=285.08  Aligned_cols=188  Identities=19%  Similarity=0.233  Sum_probs=162.8

Q ss_pred             HhhhhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-C-----CcccceEEEEecC
Q 006019          371 CEDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-H-----KNFVNLIGFCEEE  443 (664)
Q Consensus       371 ~~~~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H-----~niv~l~g~~~~~  443 (664)
                      ++.+.+.||+|.||.|-||.. .+++.||||+++...      ....+-..|+.+|..++ |     -|+|+++.|+...
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k------~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr  260 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKK------RFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFR  260 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcEEEEEeeccCh------HHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccc
Confidence            344568999999999999994 569999999997532      34456778999999997 4     3899999999988


Q ss_pred             CCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCC--CceEeccc
Q 006019          444 EPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED--YAAKLSDL  521 (664)
Q Consensus       444 ~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~--~~~kl~Df  521 (664)
                      +  +.|||+|.+.. +|++++..+....++......|+.||+.||.+||+.+  |||+||||+||||.+-  ..+||+||
T Consensus       261 ~--HlciVfELL~~-NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l~--IIHcDLKPENILL~~~~r~~vKVIDF  335 (586)
T KOG0667|consen  261 N--HLCIVFELLST-NLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHELG--IIHCDLKPENILLKDPKRSRIKVIDF  335 (586)
T ss_pred             c--ceeeeehhhhh-hHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeeccCChhheeeccCCcCceeEEec
Confidence            8  78999999966 9999999888888999999999999999999999998  9999999999999854  48999999


Q ss_pred             Cchhhhhh------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCcc
Q 006019          522 SFWNEIAM------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYL  569 (664)
Q Consensus       522 Gla~~~~~------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~  569 (664)
                      |.+.....      ....|.+||...+..++.+.||||||||+.||+||..-|.
T Consensus       336 GSSc~~~q~vytYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfp  389 (586)
T KOG0667|consen  336 GSSCFESQRVYTYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFP  389 (586)
T ss_pred             ccccccCCcceeeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccccC
Confidence            99887643      3456778999999999999999999999999999966564

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.97  E-value=3.9e-31  Score=275.05  Aligned_cols=249  Identities=19%  Similarity=0.217  Sum_probs=182.9

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCC--------
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE--------  444 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~--------  444 (664)
                      +.+.||+|+||.||+|... ++..+++|.+.......   .....+.+|++++++++||||+++++++.+..        
T Consensus        11 ~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~---~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~~~~~   87 (302)
T cd07864          11 IIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKE---GFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALDFKKD   87 (302)
T ss_pred             eeeeecccCCEEEEEEEECCCCcEEEEEEEeeccccc---CchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhhcccc
Confidence            4588999999999999975 58899999987543322   23356788999999999999999999987543        


Q ss_pred             CceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCch
Q 006019          445 PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW  524 (664)
Q Consensus       445 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla  524 (664)
                      ....++|+||+++ ++.+.+... ...+++..+..++.+++.||+|||+.+  |+||||||+||++++++.+||+|||++
T Consensus        88 ~~~~~lv~e~~~~-~l~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~~--i~H~dl~p~nili~~~~~~kl~dfg~~  163 (302)
T cd07864          88 KGAFYLVFEYMDH-DLMGLLESG-LVHFSEDHIKSFMKQLLEGLNYCHKKN--FLHRDIKCSNILLNNKGQIKLADFGLA  163 (302)
T ss_pred             CCcEEEEEcccCc-cHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEECCCCcEEeCccccc
Confidence            1257899999986 777776532 456899999999999999999999998  999999999999999999999999998


Q ss_pred             hhhhhh----------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHH---HHhcCCC--C
Q 006019          525 NEIAMA----------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAA---DYLSGVQ--P  588 (664)
Q Consensus       525 ~~~~~~----------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~---~~~~~~~--~  588 (664)
                      ......          ...+.+||.... ...+.++|||||||++|||++|+.||....  ..+...   .......  .
T Consensus       164 ~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~  241 (302)
T cd07864         164 RLYNSEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQ--ELAQLELISRLCGSPCPAV  241 (302)
T ss_pred             ccccCCcccccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHHHhCCCChhh
Confidence            765321          123456775543 346889999999999999999999995322  111111   1111100  0


Q ss_pred             Ccccc--------CC------CCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          589 LQQFV--------DP------TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       589 ~~~~~--------d~------~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ...+.        ++      .........+..+.+++.+||+.+|++||++.+++.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  298 (302)
T cd07864         242 WPDVIKLPYFNTMKPKKQYRRRLREEFSFIPTPALDLLDHMLTLDPSKRCTAEEALN  298 (302)
T ss_pred             cccccccccccccccccccccchhhhcCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            00000        00      000001123457899999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.97  E-value=5.6e-31  Score=272.71  Aligned_cols=234  Identities=19%  Similarity=0.291  Sum_probs=183.8

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      ..||+|+||.||+|... ++..+++|++....     ......+.+|+.++++++|+|++++++++...+  ..++||||
T Consensus        26 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~-----~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~e~   98 (292)
T cd06657          26 IKIGEGSTGIVCIATVKSSGKLVAVKKMDLRK-----QQRRELLFNEVVIMRDYQHENVVEMYNSYLVGD--ELWVVMEF   98 (292)
T ss_pred             HHcCCCCCeEEEEEEEcCCCeEEEEEEecccc-----hhHHHHHHHHHHHHHhcCCcchhheeeEEEeCC--EEEEEEec
Confidence            56999999999999874 68899999875322     223567899999999999999999999998877  77999999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh----
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA----  530 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~----  530 (664)
                      +++++|.+++..   ..+++.....++.+++.|++|||+.+  ++||||+|+||++++++.++|+|||++......    
T Consensus        99 ~~~~~L~~~~~~---~~~~~~~~~~~~~ql~~~l~~lH~~g--ivH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~~~  173 (292)
T cd06657          99 LEGGALTDIVTH---TRMNEEQIAAVCLAVLKALSVLHAQG--VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRR  173 (292)
T ss_pred             CCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEECCCCCEEEcccccceecccccccc
Confidence            999999988742   35899999999999999999999998  999999999999999999999999987654321    


Q ss_pred             -----hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 006019          531 -----EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  605 (664)
Q Consensus       531 -----~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  605 (664)
                           ...+.+||+......+.++|||||||++|||+||+.||...  ...+.........       .+.+.. .....
T Consensus       174 ~~~~~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~--~~~~~~~~~~~~~-------~~~~~~-~~~~~  243 (292)
T cd06657         174 KSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE--PPLKAMKMIRDNL-------PPKLKN-LHKVS  243 (292)
T ss_pred             cccccCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHhhC-------CcccCC-cccCC
Confidence                 12345677776667789999999999999999999998432  2222221111110       111110 11123


Q ss_pred             HHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          606 ETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       606 ~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ..+.+++.+||+.+|.+||++.++++
T Consensus       244 ~~l~~li~~~l~~~P~~R~~~~~ll~  269 (292)
T cd06657         244 PSLKGFLDRLLVRDPAQRATAAELLK  269 (292)
T ss_pred             HHHHHHHHHHHhCCcccCcCHHHHhc
Confidence            45789999999999999999999887

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.97  E-value=1.3e-30  Score=272.73  Aligned_cols=238  Identities=18%  Similarity=0.243  Sum_probs=184.0

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      +.||+|+||.||+|+.. ++..+++|++.......  ....+.+.+|++++++++|+|++++++++.+..  ..++||||
T Consensus        27 ~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~e~  102 (313)
T cd06633          27 HEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQT--NEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEH--TAWLVMEY  102 (313)
T ss_pred             eeeccCCCeEEEEEEECCCCcEEEEEEEeccccCc--hHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCC--EEEEEEec
Confidence            56999999999999964 68889999886543222  234467889999999999999999999998876  67999999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh-----
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM-----  529 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~-----  529 (664)
                      +. |+|.+++.. ....+++..+..++.+++.|++|||+.+  ++||||+|+||+++.++.+||+|||++.....     
T Consensus       103 ~~-~~l~~~l~~-~~~~l~~~~~~~~~~qi~~al~~LH~~g--i~H~dl~p~nili~~~~~~kL~dfg~~~~~~~~~~~~  178 (313)
T cd06633         103 CL-GSASDLLEV-HKKPLQEVEIAAITHGALQGLAYLHSHN--MIHRDIKAGNILLTEPGQVKLADFGSASKSSPANSFV  178 (313)
T ss_pred             CC-CCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCChhhEEECCCCCEEEeecCCCcccCCCCCcc
Confidence            96 588777753 3456899999999999999999999998  99999999999999999999999998765421     


Q ss_pred             hhhhcccccccC---CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHH
Q 006019          530 AEMAATSKKLSS---APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE  606 (664)
Q Consensus       530 ~~~~~~~pe~~~---~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  606 (664)
                      ....+.+||+..   ...++.++|||||||++|||++|+.||....  ............  .....       ......
T Consensus       179 ~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~--~~~~~~~~~~~~--~~~~~-------~~~~~~  247 (313)
T cd06633         179 GTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN--AMSALYHIAQND--SPTLQ-------SNEWTD  247 (313)
T ss_pred             ccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHhcC--CCCCC-------ccccCH
Confidence            123456777653   3557889999999999999999999984322  222222222111  11111       111224


Q ss_pred             HHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          607 TLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       607 ~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      .+.+++.+||+.+|++||++.+++..
T Consensus       248 ~l~~li~~~l~~~P~~Rp~~~~~l~~  273 (313)
T cd06633         248 SFRGFVDYCLQKIPQERPASAELLRH  273 (313)
T ss_pred             HHHHHHHHHccCChhhCcCHHHHhcC
Confidence            58899999999999999999998853

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.97  E-value=1.9e-31  Score=271.22  Aligned_cols=241  Identities=18%  Similarity=0.221  Sum_probs=184.1

Q ss_pred             hhcccccCCCeEEEEEEECC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+++... +..+++|.++.....+.......++..|+.++++++||||+++++++.+..  ..++||
T Consensus         4 i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   81 (260)
T cd08222           4 LQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERD--AFCIIT   81 (260)
T ss_pred             eeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCC--ceEEEE
Confidence            45789999999999998643 444556665443322222233456778999999999999999999998766  679999


Q ss_pred             EecCCCChhhhhcc--cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh
Q 006019          453 EYAPNGTLFEHIHI--KESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~--~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~  530 (664)
                      ||+++++|.++++.  .....+++..+..++.+++.|+.|||+.+  ++|+||||+||++++ ..+||+|||+++.....
T Consensus        82 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~--i~h~~l~~~nili~~-~~~~l~d~g~~~~~~~~  158 (260)
T cd08222          82 EYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRR--ILHRDLKAKNIFLKN-NLLKIGDFGVSRLLMGS  158 (260)
T ss_pred             EeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHcC--ccccCCChhheEeec-CCEeecccCceeecCCC
Confidence            99999999988863  23457999999999999999999999988  999999999999985 56999999988755321


Q ss_pred             ---------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 006019          531 ---------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  601 (664)
Q Consensus       531 ---------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  601 (664)
                               ...+.+||.......+.++||||||+++|||++|+.||..  ....+.......+.          ....+
T Consensus       159 ~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~----------~~~~~  226 (260)
T cd08222         159 CDLATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEG--QNFLSVVLRIVEGP----------TPSLP  226 (260)
T ss_pred             cccccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHcCC----------CCCCc
Confidence                     1223467766666678899999999999999999999842  22333333222211          11123


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          602 EEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       602 ~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .....++.+++.+||+.+|++||++.++++
T Consensus       227 ~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  256 (260)
T cd08222         227 ETYSRQLNSIMQSMLNKDPSLRPSAAEILR  256 (260)
T ss_pred             chhcHHHHHHHHHHhcCChhhCcCHHHHhh
Confidence            344567899999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.97  E-value=3.1e-31  Score=274.03  Aligned_cols=245  Identities=20%  Similarity=0.286  Sum_probs=186.9

Q ss_pred             hhcccccCCCeEEEEEEE----CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCcee
Q 006019          374 FSNVIGSSPIGTVYKGTL----SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~----~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~  448 (664)
                      +.+.||+|+||.||+++.    .++..+|||.+....... .....+.+.+|++++.++ +|+||+++++.+....  ..
T Consensus         4 ~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~-~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~--~~   80 (288)
T cd05583           4 LLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQ-KAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDT--KL   80 (288)
T ss_pred             EEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHh-hhhHHHHHHHHHHHHHhccCCcchhhhheeeecCC--EE
Confidence            347899999999999984    256789999886432211 122346788999999999 5999999999887766  67


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++||||+++|+|.+++..  ...+++.....++.++++||+|||+.+  ++||||||+||+++.++.++|+|||+++...
T Consensus        81 ~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~ql~~~l~~lH~~~--~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  156 (288)
T cd05583          81 HLILDYVNGGELFTHLYQ--REHFTESEVRVYIAEIVLALDHLHQLG--IIYRDIKLENILLDSEGHVVLTDFGLSKEFL  156 (288)
T ss_pred             EEEEecCCCCcHHHHHhh--cCCcCHHHHHHHHHHHHHHHHHHHHCC--eeccCCCHHHeEECCCCCEEEEECccccccc
Confidence            899999999999998863  346889999999999999999999988  9999999999999999999999999987643


Q ss_pred             hh----------hhhcccccccCCCC--CCcCCcchhhHHHHHHHHhCCCCccCCCC--ChHHHHHHHhcCCCCCccccC
Q 006019          529 MA----------EMAATSKKLSSAPS--ASLESNVYNFGVLLFEMVTGRLPYLVDNG--SLEDWAADYLSGVQPLQQFVD  594 (664)
Q Consensus       529 ~~----------~~~~~~pe~~~~~~--~s~ksDVySfGvvl~El~tG~~P~~~~~~--~~~~~~~~~~~~~~~~~~~~d  594 (664)
                      ..          ...+.+||......  .+.++||||||+++|||+||+.||.....  ...+..........       
T Consensus       157 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~-------  229 (288)
T cd05583         157 AEEEERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQNSQSEISRRILKSKP-------  229 (288)
T ss_pred             cccccccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCcccchHHHHHHHHHccCC-------
Confidence            21          12334566554433  67899999999999999999999843221  12222222222111       


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 006019          595 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  636 (664)
Q Consensus       595 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i  636 (664)
                          ..+......+.+++.+||+.+|++|||++++.+.|+..
T Consensus       230 ----~~~~~~~~~l~~li~~~l~~~p~~R~t~~~~~~~l~~~  267 (288)
T cd05583         230 ----PFPKTMSAEARDFIQKLLEKDPKKRLGANGADEIKNHP  267 (288)
T ss_pred             ----CCCcccCHHHHHHHHHHhcCCHhhccCcchHHHHhcCc
Confidence                11222334688999999999999999999888877754

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.97  E-value=2.3e-31  Score=278.61  Aligned_cols=252  Identities=16%  Similarity=0.229  Sum_probs=182.3

Q ss_pred             hhcccccCCCeEEEEEEEC---CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS---NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  450 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~---~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~l  450 (664)
                      +.+.||+|+||.||+|...   ++..+|+|.+.......  ....+.+.+|++++++++||||+++++++...+....++
T Consensus         4 ~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   81 (316)
T cd07842           4 IEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQY--TGISQSACREIALLRELKHENVVSLVEVFLEHADKSVYL   81 (316)
T ss_pred             EEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccc--cCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEEE
Confidence            4477999999999999974   47899999987643211  223456788999999999999999999998873337899


Q ss_pred             EEEecCCCChhhhhccc---CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecC----CCceEecccCc
Q 006019          451 VFEYAPNGTLFEHIHIK---ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE----DYAAKLSDLSF  523 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~---~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~----~~~~kl~DfGl  523 (664)
                      ||||+++ +|.+++...   ....++......|+.|++.|++|||+.+  ++||||||+||+++.    ++.+||+|||+
T Consensus        82 v~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~  158 (316)
T cd07842          82 LFDYAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSNW--VLHRDLKPANILVMGEGPERGVVKIGDLGL  158 (316)
T ss_pred             EEeCCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhCC--EeeCCCCHHHEEEcCCCCccceEEECCCcc
Confidence            9999975 676665422   2236888999999999999999999998  999999999999999    99999999999


Q ss_pred             hhhhhhh------------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCCh-----------HHHH
Q 006019          524 WNEIAMA------------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSL-----------EDWA  579 (664)
Q Consensus       524 a~~~~~~------------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~-----------~~~~  579 (664)
                      ++.....            ...+.+||...+ ..++.++|||||||+++||+||+.||.......           ...+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (316)
T cd07842         159 ARLFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQLERIF  238 (316)
T ss_pred             ccccCCCcccccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCcccccccchhHHHHHHHHH
Confidence            8765321            122456775544 457889999999999999999999995332211           0000


Q ss_pred             HHHhcCC-----------CCCccccCC-CCCCCC---------H--HHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          580 ADYLSGV-----------QPLQQFVDP-TLSSFD---------E--EQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       580 ~~~~~~~-----------~~~~~~~d~-~~~~~~---------~--~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      . .+...           .......+. ....++         .  ....++.+++.+|++.||++||++.|+++
T Consensus       239 ~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~eil~  312 (316)
T cd07842         239 E-VLGTPTEKDWPDIKKMPEYDTLMKDFKTKTYPSNSLAKWMEKHKKPDSQGFDLLRKLLEYDPTKRITAEEALE  312 (316)
T ss_pred             H-HhCCCchhHHHHHhhcccchhhhhhccCCCCCCccHHHHHHhccCCCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence            0 00000           000000000 000001         0  22346889999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=2.2e-31  Score=269.17  Aligned_cols=237  Identities=22%  Similarity=0.361  Sum_probs=188.5

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|++|.||+|+.. ++..+++|.+......   ......+.+|++++++++|+|++++++++...+  ..++++
T Consensus         4 ~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~~v~   78 (254)
T cd06627           4 LGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIK---EEALKSIMQEIDLLKNLKHPNIVKYIGSIETSD--SLYIIL   78 (254)
T ss_pred             eeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccC---HHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCC--EEEEEE
Confidence            4578999999999999865 5788999998754322   234568999999999999999999999998766  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++++|.+++...  ..+++..+..++.+++.|+.|||+.+  ++||||||+||+++.++.+||+|||++......  
T Consensus        79 e~~~~~~L~~~~~~~--~~l~~~~~~~~~~~i~~~l~~lH~~~--i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~  154 (254)
T cd06627          79 EYAENGSLRQIIKKF--GPFPESLVAVYVYQVLQGLAYLHEQG--VIHRDIKAANILTTKDGVVKLADFGVATKLNDVSK  154 (254)
T ss_pred             ecCCCCcHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHhhCC--cccCCCCHHHEEECCCCCEEEeccccceecCCCcc
Confidence            999999999988633  57899999999999999999999998  999999999999999999999999998765422  


Q ss_pred             -------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          531 -------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       531 -------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                             ...+.+||.......+.++||||||+++|||++|+.|+.... ..... ......  .        ....+..
T Consensus       155 ~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~-~~~~~-~~~~~~--~--------~~~~~~~  222 (254)
T cd06627         155 DDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLN-PMAAL-FRIVQD--D--------HPPLPEG  222 (254)
T ss_pred             cccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCcc-HHHHH-HHHhcc--C--------CCCCCCC
Confidence                   223456777666667889999999999999999999985322 11111 111111  0        0111222


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ....+.+++.+||+.+|++||++.+++.
T Consensus       223 ~~~~~~~~i~~~l~~~p~~R~~~~~~l~  250 (254)
T cd06627         223 ISPELKDFLMQCFQKDPNLRPTAKQLLK  250 (254)
T ss_pred             CCHHHHHHHHHHHhCChhhCcCHHHHhc
Confidence            3457889999999999999999999874

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.97  E-value=5.2e-31  Score=275.01  Aligned_cols=251  Identities=17%  Similarity=0.205  Sum_probs=180.0

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC------c
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP------F  446 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~------~  446 (664)
                      +.+.||+|+||.||+|... ++..+|||.+.......   .....+.+|++++++++||||++++++|...+.      .
T Consensus        16 ~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   92 (310)
T cd07865          16 KLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKE---GFPITALREIKILQLLKHENVVNLIEICRTKATPYNRYKG   92 (310)
T ss_pred             EEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcC---CchhHHHHHHHHHHhCCCCCccceEEEEecccccccCCCc
Confidence            3478999999999999965 68899999886543221   223456789999999999999999999875431      1


Q ss_pred             eeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhh
Q 006019          447 TRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  526 (664)
Q Consensus       447 ~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~  526 (664)
                      ..++||||+.+ +|.+.+.. ....+++.....++.+++.||+|||+.+  ++|+||||+||+++.++.+||+|||++..
T Consensus        93 ~~~lv~e~~~~-~l~~~l~~-~~~~~~~~~~~~i~~qi~~al~~lH~~~--i~H~dl~p~nil~~~~~~~kl~dfg~~~~  168 (310)
T cd07865          93 SFYLVFEFCEH-DLAGLLSN-KNVKFTLSEIKKVMKMLLNGLYYIHRNK--ILHRDMKAANILITKDGILKLADFGLARA  168 (310)
T ss_pred             eEEEEEcCCCc-CHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCCHHHEEECCCCcEEECcCCCccc
Confidence            45899999974 88887753 2346899999999999999999999998  99999999999999999999999999875


Q ss_pred             hhhh-------------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCC-hHHHHHHHhcCC--CCC
Q 006019          527 IAMA-------------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGS-LEDWAADYLSGV--QPL  589 (664)
Q Consensus       527 ~~~~-------------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~-~~~~~~~~~~~~--~~~  589 (664)
                      ....             ...+.+||.... ...+.++||||||+++|||+||+.||...... ............  ...
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (310)
T cd07865         169 FSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQHQLTLISQLCGSITPEVW  248 (310)
T ss_pred             ccCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhc
Confidence            5321             123456776543 33678999999999999999999998533211 111111111000  000


Q ss_pred             ccc-----cCC-CCCC-C---------CHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          590 QQF-----VDP-TLSS-F---------DEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       590 ~~~-----~d~-~~~~-~---------~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ...     .+. .... .         +......+.+++.+||+.||++||++.++++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~~~P~~R~t~~e~l~  306 (310)
T cd07865         249 PGVDKLELFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDPAKRIDADTALN  306 (310)
T ss_pred             ccccchhhhhhccCCCccchhhHHhcccccCCHHHHHHHHHHhcCChhhccCHHHHhc
Confidence            000     000 0000 0         0011245679999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.97  E-value=7.1e-31  Score=279.55  Aligned_cols=247  Identities=19%  Similarity=0.294  Sum_probs=183.1

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC----ceeE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----FTRM  449 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~----~~~~  449 (664)
                      .+.||+|+||.||+|+.. ++..+|+|.+......   ......+.+|++++++++|+||+++++++.....    ...+
T Consensus        21 ~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~   97 (353)
T cd07850          21 LKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQN---VTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEFQDVY   97 (353)
T ss_pred             EEEeccCCCEEEEEEEECCCCCEEEEEecCccccC---hhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCccccCcEE
Confidence            378999999999999964 6889999987533211   2234567889999999999999999999864331    1468


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                      +||||+. ++|.+.+..    .++......++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++....
T Consensus        98 lv~e~~~-~~l~~~~~~----~l~~~~~~~~~~ql~~aL~~LH~~g--i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~  170 (353)
T cd07850          98 LVMELMD-ANLCQVIQM----DLDHERMSYLLYQMLCGIKHLHSAG--IIHRDLKPSNIVVKSDCTLKILDFGLARTAGT  170 (353)
T ss_pred             EEEeccC-CCHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHhCC--eeeCCCCHHHEEECCCCCEEEccCccceeCCC
Confidence            9999996 588887742    2888999999999999999999998  99999999999999999999999999876532


Q ss_pred             h--------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHH--------------------
Q 006019          530 A--------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAAD--------------------  581 (664)
Q Consensus       530 ~--------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~--------------------  581 (664)
                      .        ...+.+||......++.++|||||||++|||++|+.||...+ ....|...                    
T Consensus       171 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (353)
T cd07850         171 SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGTD-HIDQWNKIIEQLGTPSDEFMSRLQPTVR  249 (353)
T ss_pred             CCCCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCCCC-HHHHHHHHHHhcCCCCHHHHHHhhhhhh
Confidence            2        223557887777788999999999999999999999985322 11111100                    


Q ss_pred             -HhcCCC-----CCccccCCCC----C-CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          582 -YLSGVQ-----PLQQFVDPTL----S-SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       582 -~~~~~~-----~~~~~~d~~~----~-~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                       +.....     ...+......    . .........+.+++.+||+.||++||++.|+++.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eiL~~  311 (353)
T cd07850         250 NYVENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQH  311 (353)
T ss_pred             HHhhcCCCCCCcchhhhCcccccCcccccccccchhHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence             000000     0001110000    0 0011235568899999999999999999999864

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=8.4e-31  Score=262.82  Aligned_cols=238  Identities=20%  Similarity=0.267  Sum_probs=185.9

Q ss_pred             cccccCCCeEEEEEEECC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      +.||.|.-|+||.+++++ +..+|+|++.......  .....+...|-+||+.++||.++.|++.+..++  ..|+||||
T Consensus        83 k~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~--rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~--~~cl~mey  158 (459)
T KOG0610|consen   83 KRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLAS--RKKLKRAQTEREILSLLDHPFLPTLYASFETDK--YSCLVMEY  158 (459)
T ss_pred             HHcCCCCceeEEEEEecCCCceEEEEEecHHHHhh--hhHHHHHHHHHHHHHhcCCCccchhhheeeccc--eeEEEEec
Confidence            679999999999999865 5889999998665443  233456778999999999999999999999877  77999999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhhh---
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE---  531 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~~---  531 (664)
                      |+||+|+..++......++.....-+|..|.-||+|||-.+  ||.|||||+||||-++|.+-|+||.++.......   
T Consensus       159 CpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHmlG--ivYRDLKPENILvredGHIMLsDFDLS~~~~~~Pt~~  236 (459)
T KOG0610|consen  159 CPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHMLG--IVYRDLKPENILVREDGHIMLSDFDLSLRCPVSPTLV  236 (459)
T ss_pred             CCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHhhc--eeeccCCcceeEEecCCcEEeeeccccccCCCCCeee
Confidence            99999999998778889999999999999999999999999  9999999999999999999999998764331000   


Q ss_pred             --------------------------------------------------------------hhcccccccCCCCCCcCC
Q 006019          532 --------------------------------------------------------------MAATSKKLSSAPSASLES  549 (664)
Q Consensus       532 --------------------------------------------------------------~~~~~pe~~~~~~~s~ks  549 (664)
                                                                                    ..|.+||...+...+.+.
T Consensus       237 ~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~GHgsAV  316 (459)
T KOG0610|consen  237 KSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEGHGSAV  316 (459)
T ss_pred             ccCCCCCCCCCcccccccccccccchhccccccccccccccccchhhhcCCCCccccccccccccccceeeecCCCCchh
Confidence                                                                          000123333444456789


Q ss_pred             cchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCC----
Q 006019          550 NVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT----  625 (664)
Q Consensus       550 DVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs----  625 (664)
                      |.|+|||++|||+.|+.||.+.+  -.+....++...-        .....+ +.+..+.+||++.+.+||.+|..    
T Consensus       317 DWWtfGIflYEmLyG~TPFKG~~--~~~Tl~NIv~~~l--------~Fp~~~-~vs~~akDLIr~LLvKdP~kRlg~~rG  385 (459)
T KOG0610|consen  317 DWWTFGIFLYEMLYGTTPFKGSN--NKETLRNIVGQPL--------KFPEEP-EVSSAAKDLIRKLLVKDPSKRLGSKRG  385 (459)
T ss_pred             hHHHHHHHHHHHHhCCCCcCCCC--chhhHHHHhcCCC--------cCCCCC-cchhHHHHHHHHHhccChhhhhccccc
Confidence            99999999999999999995332  2233333332211        111212 44567899999999999999988    


Q ss_pred             HHHHH
Q 006019          626 MRDIA  630 (664)
Q Consensus       626 ~~ev~  630 (664)
                      +.||-
T Consensus       386 A~eIK  390 (459)
T KOG0610|consen  386 AAEIK  390 (459)
T ss_pred             hHHhh
Confidence            55553

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.97  E-value=3.2e-31  Score=274.85  Aligned_cols=251  Identities=10%  Similarity=0.150  Sum_probs=169.9

Q ss_pred             hhhcccccCCCeEEEEEEECCC----cEEEEEEeeecccCCCchh------HHHHHHHHHHHHhccCCCcccceEEEEec
Q 006019          373 DFSNVIGSSPIGTVYKGTLSNG----VEIAVASVSVASAKDWPKN------LEVQFRKKIDTLSKVNHKNFVNLIGFCEE  442 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~~~----~~vavk~~~~~~~~~~~~~------~~~~f~~E~~~l~~l~H~niv~l~g~~~~  442 (664)
                      .+.++||+|+||.||+|...+.    ..+++|.............      .......+...+..++|+|++++++++..
T Consensus        15 ~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~   94 (294)
T PHA02882         15 KIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGCGSF   94 (294)
T ss_pred             EEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEeeeE
Confidence            3457899999999999997543    4455554332221100000      01122344455667799999999998754


Q ss_pred             CCC--ceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecc
Q 006019          443 EEP--FTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD  520 (664)
Q Consensus       443 ~~~--~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~D  520 (664)
                      ...  ...++++|++.. ++.+.+..  ....++.....|+.+++.||+|||+.+  |+||||||+|||++.++.+||+|
T Consensus        95 ~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~~--iiHrDiKp~Nill~~~~~~~l~D  169 (294)
T PHA02882         95 KRCRMYYRFILLEKLVE-NTKEIFKR--IKCKNKKLIKNIMKDMLTTLEYIHEHG--ISHGDIKPENIMVDGNNRGYIID  169 (294)
T ss_pred             ecCCceEEEEEEehhcc-CHHHHHHh--hccCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEcCCCcEEEEE
Confidence            331  234677787643 56555532  223567888999999999999999998  99999999999999999999999


Q ss_pred             cCchhhhhh----------------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhc
Q 006019          521 LSFWNEIAM----------------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLS  584 (664)
Q Consensus       521 fGla~~~~~----------------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~  584 (664)
                      ||+++....                .+..+.+||...+..++.++|||||||++|||+||+.||....... ..+.....
T Consensus       170 FGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~-~~~~~~~~  248 (294)
T PHA02882        170 YGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNG-NLIHAAKC  248 (294)
T ss_pred             cCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccch-HHHHHhHH
Confidence            999875421                1233456777777778999999999999999999999996432211 11110000


Q ss_pred             CCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 006019          585 GVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL  633 (664)
Q Consensus       585 ~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L  633 (664)
                      +  ....+..+...  ...++.++.+++..||+.+|++||++.++.+.|
T Consensus       249 ~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~rp~~~~l~~~~  293 (294)
T PHA02882        249 D--FIKRLHEGKIK--IKNANKFIYDFIECVTKLSYEEKPDYDALIKIF  293 (294)
T ss_pred             H--HHHHhhhhhhc--cCCCCHHHHHHHHHHHhCCCCCCCCHHHHHHhh
Confidence            0  00000001000  112246689999999999999999999999876

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.97  E-value=6.2e-31  Score=272.00  Aligned_cols=233  Identities=19%  Similarity=0.301  Sum_probs=179.0

Q ss_pred             hhcccccCCCeEEEEEEE----CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCcee
Q 006019          374 FSNVIGSSPIGTVYKGTL----SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~----~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~  448 (664)
                      +.+.||+|+||.||+++.    .+|..+|+|.+....... .....+.+.+|+++++++ +|+||+++++++....  ..
T Consensus         4 ~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~--~~   80 (290)
T cd05613           4 LLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQ-KAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDT--KL   80 (290)
T ss_pred             eeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhh-cchHHHHHHHHHHHHHhcccCCChhceeeEeecCC--eE
Confidence            347899999999999985    368899999986432211 122346788999999999 5999999999888766  67


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++|+||+++|+|.+++..  ...+++.....++.+++.||+|||+.+  ++||||+|+|||++.++.+||+|||+++...
T Consensus        81 ~lv~e~~~~~~L~~~l~~--~~~l~~~~~~~~~~qi~~al~~lH~~~--i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~  156 (290)
T cd05613          81 HLILDYINGGELFTHLSQ--RERFKEQEVQIYSGEIVLALEHLHKLG--IIYRDIKLENILLDSNGHVVLTDFGLSKEFH  156 (290)
T ss_pred             EEEEecCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHhCC--eeccCCCHHHeEECCCCCEEEeeCccceecc
Confidence            899999999999999863  346888899999999999999999988  9999999999999999999999999987653


Q ss_pred             hh----------hhhcccccccCC--CCCCcCCcchhhHHHHHHHHhCCCCccCCC--CChHHHHHHHhcCCCCCccccC
Q 006019          529 MA----------EMAATSKKLSSA--PSASLESNVYNFGVLLFEMVTGRLPYLVDN--GSLEDWAADYLSGVQPLQQFVD  594 (664)
Q Consensus       529 ~~----------~~~~~~pe~~~~--~~~s~ksDVySfGvvl~El~tG~~P~~~~~--~~~~~~~~~~~~~~~~~~~~~d  594 (664)
                      ..          ...+.+||....  ...+.++||||||+++|||+||+.||....  ....++.........       
T Consensus       157 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~-------  229 (290)
T cd05613         157 EDEVERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEP-------  229 (290)
T ss_pred             cccccccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcCCccccHHHHHHHhhccCC-------
Confidence            21          123455666543  235788999999999999999999985322  222333332222111       


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhccCCCCCCC
Q 006019          595 PTLSSFDEEQLETLGELIKSCVRADPEKRP  624 (664)
Q Consensus       595 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RP  624 (664)
                          .++......+.+++.+||+.+|++||
T Consensus       230 ----~~~~~~~~~~~~ll~~~l~~~p~~R~  255 (290)
T cd05613         230 ----PYPQEMSALAKDIIQRLLMKDPKKRL  255 (290)
T ss_pred             ----CCCccCCHHHHHHHHHHhcCCHHHhc
Confidence                11222335688999999999999997

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.7e-31  Score=272.43  Aligned_cols=240  Identities=20%  Similarity=0.329  Sum_probs=196.8

Q ss_pred             hhhhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEE
Q 006019          372 EDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  450 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~l  450 (664)
                      +++.+.||+|.|..|-.|++ =.|..||||++.+.....   .....+.+|+..|+-++|||||+|+.+...+.  ..||
T Consensus        20 YDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~---~st~hlfqEVRCMKLVQHpNiVRLYEViDTQT--KlyL   94 (864)
T KOG4717|consen   20 YDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDT---LSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQT--KLYL   94 (864)
T ss_pred             ehhhhhhcCCceehhhhhhhhcccceeEEEEecccccch---hhhhHHHHHHHHHHHhcCcCeeeeeehhcccc--eEEE
Confidence            34557799999999999984 379999999998766544   33456889999999999999999999988766  6799


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEec-CCCceEecccCchhhhhh
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT-EDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld-~~~~~kl~DfGla~~~~~  529 (664)
                      |+|.=.+|+|+||+- +....+......++..||..|+.|+|+..  +|||||||+||.+= .-|.+|+.|||++..+..
T Consensus        95 iLELGD~GDl~DyIm-KHe~Gl~E~La~kYF~QI~~AI~YCHqLH--VVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~P  171 (864)
T KOG4717|consen   95 ILELGDGGDLFDYIM-KHEEGLNEDLAKKYFAQIVHAISYCHQLH--VVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQP  171 (864)
T ss_pred             EEEecCCchHHHHHH-hhhccccHHHHHHHHHHHHHHHHHHhhhh--hhcccCCcceeEEeeecCceEeeeccccccCCC
Confidence            999999999999985 33456888889999999999999999988  99999999998865 558999999999887643


Q ss_pred             h--------hhhcccccccCCCCC-CcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 006019          530 A--------EMAATSKKLSSAPSA-SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  600 (664)
Q Consensus       530 ~--------~~~~~~pe~~~~~~~-s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  600 (664)
                      +        ..+|.+||...+..| .++.||||+|||||-|+.|+.||...+            +.+.+..++|... ..
T Consensus       172 G~kL~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeAN------------DSETLTmImDCKY-tv  238 (864)
T KOG4717|consen  172 GKKLTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEAN------------DSETLTMIMDCKY-TV  238 (864)
T ss_pred             cchhhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCcccccc------------chhhhhhhhcccc-cC
Confidence            3        456778888766655 467899999999999999999995332            2233444555443 24


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          601 DEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       601 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      |.....+..+|+..++..||.+|-+.+||+..
T Consensus       239 PshvS~eCrdLI~sMLvRdPkkRAslEeI~s~  270 (864)
T KOG4717|consen  239 PSHVSKECRDLIQSMLVRDPKKRASLEEIVST  270 (864)
T ss_pred             chhhhHHHHHHHHHHHhcCchhhccHHHHhcc
Confidence            66677888999999999999999999988763

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.97  E-value=9e-31  Score=264.26  Aligned_cols=230  Identities=23%  Similarity=0.306  Sum_probs=184.1

Q ss_pred             cccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEecC
Q 006019          378 IGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAP  456 (664)
Q Consensus       378 iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey~~  456 (664)
                      ||+|+||.||++... ++..+++|.+.......  ......+..|++++++++|+||+++++.+...+  ..++||||++
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~~v~e~~~   76 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIK--RKEVEHTLTERNILSRINHPFIVKLHYAFQTEE--KLYLVLEYAP   76 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcc--hHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCC--eeEEEEecCC
Confidence            699999999999975 48899999887554322  234567899999999999999999999988766  6799999999


Q ss_pred             CCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh------
Q 006019          457 NGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA------  530 (664)
Q Consensus       457 ~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~------  530 (664)
                      +++|.+++...  ..+++.....++.+++.|+.|||+.+  ++|+||+|+||+++.++.++|+|||++......      
T Consensus        77 ~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lh~~~--~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~  152 (250)
T cd05123          77 GGELFSHLSKE--GRFSEERARFYAAEIVLALEYLHSLG--IIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNT  152 (250)
T ss_pred             CCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCC--ceecCCCcceEEEcCCCcEEEeecCcceecccCCCcccC
Confidence            99999998633  36899999999999999999999988  999999999999999999999999998765332      


Q ss_pred             ---hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHH
Q 006019          531 ---EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLET  607 (664)
Q Consensus       531 ---~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  607 (664)
                         ...+.+||.......+.++|+||||+++||+++|+.||....  ..+..........           ..+......
T Consensus       153 ~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~--~~~~~~~~~~~~~-----------~~~~~~~~~  219 (250)
T cd05123         153 FCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAED--RKEIYEKILKDPL-----------RFPEFLSPE  219 (250)
T ss_pred             CcCCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCC--HHHHHHHHhcCCC-----------CCCCCCCHH
Confidence               234456777766667889999999999999999999994322  2333222222111           112222456


Q ss_pred             HHHHHHHhccCCCCCCCCHHH
Q 006019          608 LGELIKSCVRADPEKRPTMRD  628 (664)
Q Consensus       608 l~~l~~~Cl~~~P~~RPs~~e  628 (664)
                      +.+++.+||..||++||++.+
T Consensus       220 l~~~i~~~l~~~p~~R~~~~~  240 (250)
T cd05123         220 ARDLISGLLQKDPTKRLGSGG  240 (250)
T ss_pred             HHHHHHHHhcCCHhhCCCccc
Confidence            889999999999999999954

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.97  E-value=2.5e-31  Score=280.78  Aligned_cols=249  Identities=16%  Similarity=0.220  Sum_probs=181.9

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCC--CceeEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE--PFTRMMV  451 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~--~~~~~lV  451 (664)
                      .+.||+|+||.||+|... ++..|++|++......   ....+.+.+|+.++++++||||+++++++....  ....++|
T Consensus        10 ~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv   86 (334)
T cd07855          10 IENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDV---PTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDVYVV   86 (334)
T ss_pred             eeeeecCCCeEEEEEEEcCCCCEEEEEEecccccc---ccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceEEEE
Confidence            478999999999999964 6899999988653321   123456788999999999999999998875422  2257999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh-
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  530 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~-  530 (664)
                      +||+. |+|.++++.  ...+++.....++.+++.||+|||+.+  ++||||||+||++++++.+||+|||+++..... 
T Consensus        87 ~e~~~-~~l~~~~~~--~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~  161 (334)
T cd07855          87 MDLME-SDLHHIIHS--DQPLTEEHIRYFLYQLLRGLKYIHSAN--VIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSP  161 (334)
T ss_pred             Eehhh-hhHHHHhcc--CCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEEcCCCcEEecccccceeecccC
Confidence            99995 689988863  345899999999999999999999998  999999999999999999999999998755321 


Q ss_pred             ------------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCCh-HHHHHHHhcCC----------
Q 006019          531 ------------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSL-EDWAADYLSGV----------  586 (664)
Q Consensus       531 ------------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~-~~~~~~~~~~~----------  586 (664)
                                  ...+.+||.... ..++.++|||||||++|||++|+.||...+... ...........          
T Consensus       162 ~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  241 (334)
T cd07855         162 TEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLILSVLGSPSEEVLNRIGS  241 (334)
T ss_pred             cCCCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCChHHHHHHHHHHhCCChhHhhhhhch
Confidence                        122345665433 457899999999999999999999995332110 00000000000          


Q ss_pred             CCCccccC--CCCC-----CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          587 QPLQQFVD--PTLS-----SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       587 ~~~~~~~d--~~~~-----~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .......+  +...     ...+..+.++.+++.+||+.+|++||++.+++.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~  293 (334)
T cd07855         242 DRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVEQALQ  293 (334)
T ss_pred             hhHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence            00000000  0000     011223567899999999999999999998877

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.97  E-value=5e-31  Score=278.69  Aligned_cols=249  Identities=13%  Similarity=0.221  Sum_probs=182.1

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCch---------hHHHHHHHHHHHHhccCCCcccceEEEEecCC
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPK---------NLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE  444 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~---------~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~  444 (664)
                      .+.||+|+||.||+|+.. ++..||||++..........         .....+.+|++++++++|+||+++++++...+
T Consensus        14 ~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   93 (335)
T PTZ00024         14 GAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDVYVEGD   93 (335)
T ss_pred             hhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEEEecCC
Confidence            467999999999999964 68899999886543221000         01235789999999999999999999998776


Q ss_pred             CceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCch
Q 006019          445 PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW  524 (664)
Q Consensus       445 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla  524 (664)
                        ..++||||++ |+|.+++.  ....+++.....++.+++.||+|||+.+  ++||||+|+||+++.++.+||+|||++
T Consensus        94 --~~~lv~e~~~-~~l~~~l~--~~~~~~~~~~~~~~~ql~~aL~~LH~~~--i~H~dl~~~nill~~~~~~kl~dfg~~  166 (335)
T PTZ00024         94 --FINLVMDIMA-SDLKKVVD--RKIRLTESQVKCILLQILNGLNVLHKWY--FMHRDLSPANIFINSKGICKIADFGLA  166 (335)
T ss_pred             --cEEEEEeccc-cCHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHhCC--eecccccHHHeEECCCCCEEECCccce
Confidence              6799999997 69998885  3345889999999999999999999998  999999999999999999999999998


Q ss_pred             hhhhh-----------------------hhhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHH--
Q 006019          525 NEIAM-----------------------AEMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDW--  578 (664)
Q Consensus       525 ~~~~~-----------------------~~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~--  578 (664)
                      +....                       ....+.+||...+ ..++.++|||||||++|||+||+.||...+. ....  
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~-~~~~~~  245 (335)
T PTZ00024        167 RRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGENE-IDQLGR  245 (335)
T ss_pred             eecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHHHH
Confidence            75541                       0112345665543 3468899999999999999999999853321 1111  


Q ss_pred             HHHHhcCCCC--Cc------------cccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          579 AADYLSGVQP--LQ------------QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       579 ~~~~~~~~~~--~~------------~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      +.........  ..            ....+...........++.+++.+||+.+|++||++.|++.
T Consensus       246 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~  312 (335)
T PTZ00024        246 IFELLGTPNEDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERISAKEALK  312 (335)
T ss_pred             HHHHhCCCchhhCcchhhcccccccCcCCcccHHHhCcCCChHHHHHHHHHcCCCchhccCHHHHhc
Confidence            1111110000  00            00000000111123456889999999999999999999986

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.97  E-value=4.2e-31  Score=271.33  Aligned_cols=237  Identities=23%  Similarity=0.304  Sum_probs=186.0

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.+.||+|+||.||+|... ++..+++|.+......  .....+.+.+|++++++++ |+||+++++++...+  ..++|
T Consensus         5 ~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~--~~~lv   80 (280)
T cd05581           5 FGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLI--KEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEE--NLYFV   80 (280)
T ss_pred             EeeeecCCCceEEEEEEEcCCCCEEEEEEechHhcc--chHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCc--eEEEE
Confidence            4478999999999999965 6899999988653221  1233467899999999998 999999999988776  67999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhhh
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  531 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~~  531 (664)
                      |||+++++|.+++..  ...+++.....|+.+++.||+|||+.+  ++|+||+|+||+++.++.++++|||++.......
T Consensus        81 ~e~~~~~~L~~~l~~--~~~l~~~~~~~i~~ql~~~l~~Lh~~~--~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~~~  156 (280)
T cd05581          81 LEYAPNGELLQYIRK--YGSLDEKCTRFYAAEILLALEYLHSKG--IIHRDLKPENILLDKDMHIKITDFGTAKVLDPNS  156 (280)
T ss_pred             EcCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eeecCCCHHHeEECCCCCEEecCCccccccCCcc
Confidence            999999999999863  346999999999999999999999998  9999999999999999999999999987653211


Q ss_pred             -----------------------------hhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHH
Q 006019          532 -----------------------------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY  582 (664)
Q Consensus       532 -----------------------------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~  582 (664)
                                                   ..+.+||.......+.++||||||++++|+++|+.||....  ........
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~--~~~~~~~~  234 (280)
T cd05581         157 SPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSN--EYLTFQKI  234 (280)
T ss_pred             ccccCCCCCccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCcc--HHHHHHHH
Confidence                                         22345666556667889999999999999999999994322  11111222


Q ss_pred             hcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCH----HHHHH
Q 006019          583 LSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTM----RDIAA  631 (664)
Q Consensus       583 ~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~----~ev~~  631 (664)
                      ....           ...+...+..+.+++.+||+.+|++||++    +++++
T Consensus       235 ~~~~-----------~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~ll~  276 (280)
T cd05581         235 LKLE-----------YSFPPNFPPDAKDLIEKLLVLDPQDRLGVNEGYDELKA  276 (280)
T ss_pred             HhcC-----------CCCCCccCHHHHHHHHHHhcCCHhhCCCcccCHHHHhc
Confidence            1110           01122224568899999999999999999    66553

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.4e-31  Score=277.07  Aligned_cols=238  Identities=20%  Similarity=0.274  Sum_probs=189.3

Q ss_pred             cccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      +.||.|+||.||.|+. .+...||||++.-...+.  ..--.++.+|+..|++++|||++.+.|||....  ..+|||||
T Consensus        32 rEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs--~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~--TaWLVMEY  107 (948)
T KOG0577|consen   32 REIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQS--NEKWQDILKEVRFLRQLRHPNTIEYKGCYLREH--TAWLVMEY  107 (948)
T ss_pred             HHhcCCccceeEEeeccCccceeeeeecccccccc--HHHHHHHHHHHHHHHhccCCCcccccceeeccc--hHHHHHHH
Confidence            4699999999999994 567899999987554433  233467999999999999999999999998766  67999999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh----
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA----  530 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~----  530 (664)
                      |- ||-.|++.. ...++.......|..|.+.||+|||+.+  .||||||+.||||++.+.+|++|||.|....+.    
T Consensus       108 Cl-GSAsDlleV-hkKplqEvEIAAi~~gaL~gLaYLHS~~--~IHRDiKAGNILLse~g~VKLaDFGSAsi~~PAnsFv  183 (948)
T KOG0577|consen  108 CL-GSASDLLEV-HKKPLQEVEIAAITHGALQGLAYLHSHN--RIHRDIKAGNILLSEPGLVKLADFGSASIMAPANSFV  183 (948)
T ss_pred             Hh-ccHHHHHHH-HhccchHHHHHHHHHHHHHHHHHHHHhh--HHhhhccccceEecCCCeeeeccccchhhcCchhccc
Confidence            94 588887743 2456888889999999999999999998  999999999999999999999999998877543    


Q ss_pred             -hhhccccccc---CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHH
Q 006019          531 -EMAATSKKLS---SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE  606 (664)
Q Consensus       531 -~~~~~~pe~~---~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  606 (664)
                       +.++.+||..   ..+.|+-|+||||+||...||.-.++|+.  +++...-.+.+-++ +      .|.+.  ..+..+
T Consensus       184 GTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlF--nMNAMSALYHIAQN-e------sPtLq--s~eWS~  252 (948)
T KOG0577|consen  184 GTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLF--NMNAMSALYHIAQN-E------SPTLQ--SNEWSD  252 (948)
T ss_pred             CCccccchhHheeccccccCCccceeeccchhhhhhhcCCCcc--CchHHHHHHHHHhc-C------CCCCC--CchhHH
Confidence             4566677765   34678999999999999999999999973  22222222222222 1      12222  355667


Q ss_pred             HHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          607 TLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       607 ~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      .+.+++..|+++-|.+|||..+++..
T Consensus       253 ~F~~Fvd~CLqKipqeRptse~ll~H  278 (948)
T KOG0577|consen  253 YFRNFVDSCLQKIPQERPTSEELLKH  278 (948)
T ss_pred             HHHHHHHHHHhhCcccCCcHHHHhhc
Confidence            89999999999999999999987753

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.97  E-value=5.6e-31  Score=270.81  Aligned_cols=246  Identities=18%  Similarity=0.255  Sum_probs=185.1

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||+|+.. ++..+++|.+......   ....+.+..|++++++++|+|++++++++.+.+  ..++|+|
T Consensus         4 ~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~---~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--~~~~v~e   78 (282)
T cd07829           4 LEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEE---EGIPSTALREISLLKELKHPNIVKLLDVIHTER--KLYLVFE   78 (282)
T ss_pred             ehcccccCcceEEEeeecCCCcEEEEEEecccccc---ccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCC--ceEEEec
Confidence            367999999999999975 4899999998765321   223467889999999999999999999998776  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      |++ ++|.+++.... ..+++..+.+++.+++.||+|||+.+  ++||||+|+||++++++.+||+|||+++.....   
T Consensus        79 ~~~-~~l~~~i~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~~--i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~  154 (282)
T cd07829          79 YCD-MDLKKYLDKRP-GPLSPNLIKSIMYQLLRGLAYCHSHR--ILHRDLKPQNILINRDGVLKLADFGLARAFGIPLRT  154 (282)
T ss_pred             CcC-cCHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCChheEEEcCCCCEEEecCCcccccCCCccc
Confidence            998 59999986432 46999999999999999999999998  999999999999999999999999998765322   


Q ss_pred             ------hhhcccccccCCC-CCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcC--------------C---
Q 006019          531 ------EMAATSKKLSSAP-SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG--------------V---  586 (664)
Q Consensus       531 ------~~~~~~pe~~~~~-~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~--------------~---  586 (664)
                            ...+.+||..... ..+.++|||||||++|||++|+.||..+.  ..+........              .   
T Consensus       155 ~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (282)
T cd07829         155 YTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDS--EIDQLFKIFQILGTPTEESWPGVTKLPDY  232 (282)
T ss_pred             cCccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCcc--HHHHHHHHHHHhCCCcHHHHHhhcccccc
Confidence                  1224567765544 67889999999999999999999984322  11111111100              0   


Q ss_pred             -CCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          587 -QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       587 -~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                       ...............+.....+.+++.+||+.+|++||++.+++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  278 (282)
T cd07829         233 KPTFPKFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEALK  278 (282)
T ss_pred             cccccccCccchHHhcccccHHHHHHHHHhhccCcccCCCHHHHhh
Confidence             000000000000001112457899999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.97  E-value=7.1e-31  Score=277.70  Aligned_cols=257  Identities=15%  Similarity=0.168  Sum_probs=186.8

Q ss_pred             hcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC---ceeEE
Q 006019          375 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP---FTRMM  450 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~---~~~~l  450 (664)
                      .+.||+|+||.||+|+. .++..||||.+......   ......+.+|+.++++++|+||+++++++.....   ...++
T Consensus        10 ~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~l   86 (337)
T cd07858          10 IKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDN---RIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFNDVYI   86 (337)
T ss_pred             EEEeccCCCeEEEEEEecCCCCeEEEEEecccccc---cchhHHHHHHHHHHHhcCCCCccchHHheecccccccCcEEE
Confidence            36899999999999995 46899999988643221   1234567889999999999999999998865421   14699


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  530 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~  530 (664)
                      ||||+. ++|.+++.  ....+++.....++.+++.||.|||+.+  ++||||||+||+++.++.+||+|||+++.....
T Consensus        87 v~e~~~-~~L~~~~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~~--i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~  161 (337)
T cd07858          87 VYELMD-TDLHQIIR--SSQTLSDDHCQYFLYQLLRGLKYIHSAN--VLHRDLKPSNLLLNANCDLKICDFGLARTTSEK  161 (337)
T ss_pred             EEeCCC-CCHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHhCC--EecCCCCHHHEEEcCCCCEEECcCccccccCCC
Confidence            999996 68988875  3356899999999999999999999998  999999999999999999999999998765322


Q ss_pred             ---------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCC-hHHHHHHHhcCC--CCCcc------
Q 006019          531 ---------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGS-LEDWAADYLSGV--QPLQQ------  591 (664)
Q Consensus       531 ---------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~-~~~~~~~~~~~~--~~~~~------  591 (664)
                               ...+.+||.... ..++.++|||||||++|||++|+.||...... ............  .....      
T Consensus       162 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (337)
T cd07858         162 GDFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKLITELLGSPSEEDLGFIRNEKA  241 (337)
T ss_pred             cccccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcCchhh
Confidence                     123456775432 45788999999999999999999998532210 000000000000  00000      


Q ss_pred             ---------ccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH--HHhhhCC
Q 006019          592 ---------FVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI--LREITGI  639 (664)
Q Consensus       592 ---------~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~--L~~i~~~  639 (664)
                               ..++......+....++.+++.+||+.+|++||+++++++.  ++.+...
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rps~~ell~h~~~~~~~~~  300 (337)
T cd07858         242 RRYIRSLPYTPRQSFARLFPHANPLAIDLLEKMLVFDPSKRITVEEALAHPYLASLHDP  300 (337)
T ss_pred             hHHHHhcCcccccCHHHHcccCCHHHHHHHHHHhcCChhhccCHHHHHcCcchhhhcCc
Confidence                     00000011112344668899999999999999999999987  7666444

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.97  E-value=9.1e-31  Score=273.31  Aligned_cols=249  Identities=18%  Similarity=0.156  Sum_probs=180.4

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC------c
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP------F  446 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~------~  446 (664)
                      +.+.||+|+||.||+|+.. ++..+++|++......+   .....+.+|++++++++|+||+++++++.+...      .
T Consensus        12 ~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~   88 (311)
T cd07866          12 ILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKD---GFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRKRG   88 (311)
T ss_pred             EEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCC---CcchhHHHHHHHHHhcCCCCccchhhheecccccccccCc
Confidence            3478999999999999965 58899999987654332   123457789999999999999999998754331      1


Q ss_pred             eeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhh
Q 006019          447 TRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  526 (664)
Q Consensus       447 ~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~  526 (664)
                      ..++|+||+.. +|...+.. ....+++.....++.++++||+|||+.+  ++||||||+||++++++.+||+|||+++.
T Consensus        89 ~~~lv~~~~~~-~l~~~~~~-~~~~~~~~~~~~i~~~l~~al~~lH~~~--i~H~dl~p~nil~~~~~~~~l~dfg~~~~  164 (311)
T cd07866          89 SVYMVTPYMDH-DLSGLLEN-PSVKLTESQIKCYMLQLLEGINYLHENH--ILHRDIKAANILIDNQGILKIADFGLARP  164 (311)
T ss_pred             eEEEEEecCCc-CHHHHHhc-cccCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEECCCCCEEECcCccchh
Confidence            46899999975 67776653 3456999999999999999999999998  99999999999999999999999999876


Q ss_pred             hhhh--------------------hhhcccccccC-CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcC
Q 006019          527 IAMA--------------------EMAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG  585 (664)
Q Consensus       527 ~~~~--------------------~~~~~~pe~~~-~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~  585 (664)
                      ....                    ...+.+||... ...++.++|||||||++|||+||+.||....  ...........
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~--~~~~~~~~~~~  242 (311)
T cd07866         165 YDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKS--DIDQLHLIFKL  242 (311)
T ss_pred             ccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHH
Confidence            5321                    11245677543 3457889999999999999999999984322  11111111110


Q ss_pred             CC-----------CCcccc----CCCCCC----CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          586 VQ-----------PLQQFV----DPTLSS----FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       586 ~~-----------~~~~~~----d~~~~~----~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ..           ......    ......    ........+.+++.+|++.+|++||++.|++.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~  307 (311)
T cd07866         243 CGTPTEETWPGWRSLPGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASDALE  307 (311)
T ss_pred             hCCCChhhchhhhhcccccccccCCCCCccHHHHcccCChhHHHHHHHHcccCcccCcCHHHHhc
Confidence            00           000000    000000    00112246789999999999999999998874

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.97  E-value=6.4e-31  Score=277.96  Aligned_cols=256  Identities=16%  Similarity=0.201  Sum_probs=185.1

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC---ceeE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP---FTRM  449 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~---~~~~  449 (664)
                      +.+.||+|+||.||+|+. .+|..||+|.+.....    ......+.+|+.++++++|+||+++++++.....   ...+
T Consensus         9 i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~   84 (336)
T cd07849           9 NLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEH----QTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDVY   84 (336)
T ss_pred             EEEEEEecCCeEEEEEEEcCCCCeEEEEEeccccc----chhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceEE
Confidence            347899999999999985 4688999998853221    2234678899999999999999999998765431   2468


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                      +|+||+++ +|.+.+.   ...+++.....++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||+++....
T Consensus        85 lv~e~~~~-~l~~~~~---~~~l~~~~~~~i~~ql~~aL~~LH~~~--ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~  158 (336)
T cd07849          85 IVQELMET-DLYKLIK---TQHLSNDHIQYFLYQILRGLKYIHSAN--VLHRDLKPSNLLLNTNCDLKICDFGLARIADP  158 (336)
T ss_pred             EEehhccc-CHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHhCC--eeccCCCHHHEEECCCCCEEECcccceeeccc
Confidence            99999974 8877764   346899999999999999999999998  99999999999999999999999999876532


Q ss_pred             h------------hhhcccccccC-CCCCCcCCcchhhHHHHHHHHhCCCCccCCCC-ChHHHHHHHhcCC--CCCcccc
Q 006019          530 A------------EMAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNG-SLEDWAADYLSGV--QPLQQFV  593 (664)
Q Consensus       530 ~------------~~~~~~pe~~~-~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~-~~~~~~~~~~~~~--~~~~~~~  593 (664)
                      .            ...+.+||... ...++.++|||||||++|||+||+.||..... .........+...  +....+.
T Consensus       159 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (336)
T cd07849         159 EHDHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDYLHQLNLILGVLGTPSQEDLNCII  238 (336)
T ss_pred             cccccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhh
Confidence            1            12245677543 34578899999999999999999999943221 0000111111100  0000000


Q ss_pred             CC----------CCCC-----CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH--HHhhhCC
Q 006019          594 DP----------TLSS-----FDEEQLETLGELIKSCVRADPEKRPTMRDIAAI--LREITGI  639 (664)
Q Consensus       594 d~----------~~~~-----~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~--L~~i~~~  639 (664)
                      +.          ....     ..+....++.+++.+||+.+|++||++.++++.  ++.....
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~hp~~~~~~~~  301 (336)
T cd07849         239 SLRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRITVEEALAHPYLEQYHDP  301 (336)
T ss_pred             chhhhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhhCcCHHHHhcCccccccCCC
Confidence            00          0000     001224568899999999999999999999886  6655543

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=5.4e-31  Score=271.96  Aligned_cols=235  Identities=24%  Similarity=0.333  Sum_probs=183.7

Q ss_pred             hcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .++||+||...|||+...+.+.+|+|++......   ......|.+|+..|.+++ |.+||+|+.|-..++  ..|+|||
T Consensus       366 lk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D---~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~--~lYmvmE  440 (677)
T KOG0596|consen  366 LKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEAD---NQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDG--YLYMVME  440 (677)
T ss_pred             HHhhcCCCcceeeeeecCCCcchhhhHHHHhhcC---HHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCc--eEEEEee
Confidence            4679999999999999888888898887654432   356678999999999995 999999999988777  7899999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      |=+ -+|..+|..+.....+| .+..+..+|+.|+.++|+.+  |||.||||.|+|+- +|.+||+|||+|+.+...   
T Consensus       441 ~Gd-~DL~kiL~k~~~~~~~~-~lk~ywkqML~aV~~IH~~g--IVHSDLKPANFLlV-kG~LKLIDFGIA~aI~~DTTs  515 (677)
T KOG0596|consen  441 CGD-IDLNKILKKKKSIDPDW-FLKFYWKQMLLAVKTIHQHG--IVHSDLKPANFLLV-KGRLKLIDFGIANAIQPDTTS  515 (677)
T ss_pred             ccc-ccHHHHHHhccCCCchH-HHHHHHHHHHHHHHHHHHhc--eeecCCCcccEEEE-eeeEEeeeechhcccCccccc
Confidence            874 49999998777777777 67778999999999999999  99999999999986 689999999999877432   


Q ss_pred             --------hhhcccccccC-----------CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChH-HHHHHHhcCCCCCc
Q 006019          531 --------EMAATSKKLSS-----------APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLE-DWAADYLSGVQPLQ  590 (664)
Q Consensus       531 --------~~~~~~pe~~~-----------~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~-~~~~~~~~~~~~~~  590 (664)
                              +..|++||-..           .-+++.+|||||+|||||+|+.|+.||.    +.. .|        ..+.
T Consensus       516 I~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~----~~~n~~--------aKl~  583 (677)
T KOG0596|consen  516 IVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFG----QIINQI--------AKLH  583 (677)
T ss_pred             eeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchH----HHHHHH--------HHHH
Confidence                    23445565332           1236789999999999999999999992    111 22        2233


Q ss_pred             cccCCCCC-CCCHH-HHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          591 QFVDPTLS-SFDEE-QLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       591 ~~~d~~~~-~~~~~-~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .+.||... +++.. ...++.++|+.|++.||.+||+..++++
T Consensus       584 aI~~P~~~Iefp~~~~~~~li~~mK~CL~rdPkkR~si~eLLq  626 (677)
T KOG0596|consen  584 AITDPNHEIEFPDIPENDELIDVMKCCLARDPKKRWSIPELLQ  626 (677)
T ss_pred             hhcCCCccccccCCCCchHHHHHHHHHHhcCcccCCCcHHHhc
Confidence            34444321 22211 1123889999999999999999998876

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.97  E-value=4.6e-32  Score=253.51  Aligned_cols=240  Identities=20%  Similarity=0.271  Sum_probs=189.8

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|.|..||++.. ++|+.+|+|++.......   ...+++.+|+.+-+.++|||||+|..-+.+..  ..+||+
T Consensus        15 l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~---~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~--~~ylvF   89 (355)
T KOG0033|consen   15 VKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSA---RDFQKLEREARICRKLQHPNIVRLHDSIQEES--FHYLVF   89 (355)
T ss_pred             HHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhcc---ccHHHHHHHHHHHHhcCCCcEeehhhhhcccc--eeEEEE
Confidence            447899999999999884 578999999887655433   35678999999999999999999999888776  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC---ceEecccCchhhhhh
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY---AAKLSDLSFWNEIAM  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~---~~kl~DfGla~~~~~  529 (664)
                      |+|.+|+|..-+-.+  ...+....-..++||+.+|.|+|..+  |||||+||.|+||.+.-   -+|++|||+|..+..
T Consensus        90 e~m~G~dl~~eIV~R--~~ySEa~aSH~~rQiLeal~yCH~n~--IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~~  165 (355)
T KOG0033|consen   90 DLVTGGELFEDIVAR--EFYSEADASHCIQQILEALAYCHSNG--IVHRDLKPENLLLASKAKGAAVKLADFGLAIEVND  165 (355)
T ss_pred             ecccchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcC--ceeccCChhheeeeeccCCCceeecccceEEEeCC
Confidence            999999997655422  34566677788999999999999999  99999999999997443   579999999988763


Q ss_pred             hh--------hhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 006019          530 AE--------MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  601 (664)
Q Consensus       530 ~~--------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  601 (664)
                      +.        ..+.+||.....+++..+|||+-||||+-|+.|..||.++  +..+...+++++...+.   .+....  
T Consensus       166 g~~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~--~~~rlye~I~~g~yd~~---~~~w~~--  238 (355)
T KOG0033|consen  166 GEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE--DQHRLYEQIKAGAYDYP---SPEWDT--  238 (355)
T ss_pred             ccccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCc--cHHHHHHHHhccccCCC---CcccCc--
Confidence            32        2345688888888999999999999999999999999643  33444555555433222   122222  


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          602 EEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       602 ~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                        ..++..+|+.+++..||.+|.|+.|.++
T Consensus       239 --is~~Ak~LvrrML~~dP~kRIta~EAL~  266 (355)
T KOG0033|consen  239 --VTPEAKSLIRRMLTVNPKKRITADEALK  266 (355)
T ss_pred             --CCHHHHHHHHHHhccChhhhccHHHHhC
Confidence              2356889999999999999999887653

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.97  E-value=2.5e-30  Score=274.38  Aligned_cols=246  Identities=17%  Similarity=0.169  Sum_probs=178.6

Q ss_pred             cccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC----ceeEE
Q 006019          376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----FTRMM  450 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~----~~~~l  450 (664)
                      +.||+|+||.||+|.. .++..||+|++......   ....+.+.+|++++++++|+||+++++++.....    ...++
T Consensus        23 ~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~l   99 (345)
T cd07877          23 SPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS---IIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYL   99 (345)
T ss_pred             EEeeecCCeEEEEEEEcCCCeEEEEEEecCcchh---hHHHHHHHHHHHHHHHcCCCcccceeeeeeecccccccccEEE
Confidence            7899999999999985 46889999988643211   2234568899999999999999999998864321    13578


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  530 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~  530 (664)
                      ++|++ +++|.+++..   ..+++..+..++.++++|++|||+.+  ++||||||+||++++++.+||+|||+++.....
T Consensus       100 v~~~~-~~~L~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~~--ivH~dlkp~NIll~~~~~~kl~dfg~~~~~~~~  173 (345)
T cd07877         100 VTHLM-GADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHSAD--IIHRDLKPSNLAVNEDCELKILDFGLARHTDDE  173 (345)
T ss_pred             Eehhc-ccCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC--eeecCCChHHEEEcCCCCEEEeccccccccccc
Confidence            88877 7899887742   35899999999999999999999998  999999999999999999999999998765322


Q ss_pred             ------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCC-CC-------------
Q 006019          531 ------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-PL-------------  589 (664)
Q Consensus       531 ------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~-~~-------------  589 (664)
                            ...+.+||.... ...+.++|||||||++|||++|+.||....  ............. ..             
T Consensus       174 ~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (345)
T cd07877         174 MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTD--HIDQLKLILRLVGTPGAELLKKISSESAR  251 (345)
T ss_pred             ccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHhCCCCHHHHhhcccHhHH
Confidence                  123456775543 457889999999999999999999984322  1111111110000 00             


Q ss_pred             ------ccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          590 ------QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       590 ------~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                            .................++.+++.+|++.||++||++.+++..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h  300 (345)
T cd07877         252 NYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH  300 (345)
T ss_pred             HHHHHhcccCCcchhhhcCCCCHHHHHHHHHHcCCChhhcCCHHHHhcC
Confidence                  0000000000001123467899999999999999999998764

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.97  E-value=2.4e-30  Score=274.22  Aligned_cols=260  Identities=15%  Similarity=0.184  Sum_probs=188.1

Q ss_pred             hcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC----ceeE
Q 006019          375 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----FTRM  449 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~----~~~~  449 (664)
                      .+.||+|+||.||+|.. .++..||||++......   ......+.+|++++++++|+||+++++++.....    ...+
T Consensus        20 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~   96 (343)
T cd07880          20 LKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQS---ELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDRFHDFY   96 (343)
T ss_pred             EEEeeecCCeEEEEEEECCCCcEEEEEEecccccc---hHHHHHHHHHHHHHHhcCCCCccceeeeecCCccccccceEE
Confidence            47899999999999985 46889999988543211   2334578899999999999999999999865432    1358


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                      +||||+ +++|.+++.   ...+++..+..++.+++.|++|||+.+  |+||||||+||+++.++.+|++|||+++....
T Consensus        97 lv~e~~-~~~l~~~~~---~~~l~~~~~~~i~~qi~~al~~LH~~g--i~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~  170 (343)
T cd07880          97 LVMPFM-GTDLGKLMK---HEKLSEDRIQFLVYQMLKGLKYIHAAG--IIHRDLKPGNLAVNEDCELKILDFGLARQTDS  170 (343)
T ss_pred             EEEecC-CCCHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEcCCCCEEEeeccccccccc
Confidence            999999 679988774   246899999999999999999999998  99999999999999999999999999876532


Q ss_pred             h------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCC-------------
Q 006019          530 A------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL-------------  589 (664)
Q Consensus       530 ~------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~-------------  589 (664)
                      .      ...+.+||.... ..++.++|||||||++||+++|+.||....  ...............             
T Consensus       171 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (343)
T cd07880         171 EMTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHD--HLDQLMEIMKVTGTPSKEFVQKLQSEDA  248 (343)
T ss_pred             CccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHhcCCCCHHHHHhhcchhH
Confidence            2      122345665443 357889999999999999999999995322  111111111110000             


Q ss_pred             -------ccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHH--HHHHhhhCCCCCCCC
Q 006019          590 -------QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIA--AILREITGITPDGAI  645 (664)
Q Consensus       590 -------~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~--~~L~~i~~~~~~~~~  645 (664)
                             .......+....+.....+.+++.+|++.||++||++.+++  ..++.......+...
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~t~~~~l~~~~~~~~~~~~~~~~~  313 (343)
T cd07880         249 KNYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRITAAEALAHPYFEEFHDPEDETEA  313 (343)
T ss_pred             HHHHHhccccCcchHHHhccCCChHHHHHHHHHcCCChhhCCCHHHHhcCccHhhhcCcccccCC
Confidence                   00000000011122334688999999999999999999998  556666554444333

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.97  E-value=5.6e-30  Score=261.68  Aligned_cols=226  Identities=16%  Similarity=0.226  Sum_probs=173.2

Q ss_pred             cccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeEEEEEec
Q 006019          378 IGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVFEYA  455 (664)
Q Consensus       378 iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~lV~Ey~  455 (664)
                      ||+|+||.||+++.. ++..+++|.+.......        .  |+.....+ +|+||+++++++...+  ..++||||+
T Consensus        24 lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~--------~--e~~~~~~~~~h~~iv~~~~~~~~~~--~~~iv~e~~   91 (267)
T PHA03390         24 LIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNA--------I--EPMVHQLMKDNPNFIKLYYSVTTLK--GHVLIMDYI   91 (267)
T ss_pred             ecCCCceEEEEEEEcCCCcEEEEEEEehhhcch--------h--hHHHHHHhhcCCCEEEEEEEEecCC--eeEEEEEcC
Confidence            599999999999964 57888888875432111        1  22222212 6999999999998877  679999999


Q ss_pred             CCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC-ceEecccCchhhhhhh----
Q 006019          456 PNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY-AAKLSDLSFWNEIAMA----  530 (664)
Q Consensus       456 ~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~-~~kl~DfGla~~~~~~----  530 (664)
                      ++|+|.+++...  ..+++.....++.++++|++|||+.+  ++||||||+||+++.++ .++|+|||+++.....    
T Consensus        92 ~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~~~  167 (267)
T PHA03390         92 KDGDLFDLLKKE--GKLSEAEVKKIIRQLVEALNDLHKHN--IIHNDIKLENVLYDRAKDRIYLCDYGLCKIIGTPSCYD  167 (267)
T ss_pred             CCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCC--eeeCCCCHHHEEEeCCCCeEEEecCccceecCCCccCC
Confidence            999999998643  37999999999999999999999998  99999999999999998 9999999988765322    


Q ss_pred             -hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCC---hHHHHHHHhcCCCCCccccCCCCCCCCHHHHH
Q 006019          531 -EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGS---LEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE  606 (664)
Q Consensus       531 -~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  606 (664)
                       ...+.+||......++.++|||||||++|||+||+.||......   ..++.... ..          . .........
T Consensus       168 ~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~-~~----------~-~~~~~~~~~  235 (267)
T PHA03390        168 GTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEELDLESLLKRQ-QK----------K-LPFIKNVSK  235 (267)
T ss_pred             CCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcchhhHHHHHHhh-cc----------c-CCcccccCH
Confidence             23456788777777889999999999999999999999533221   12222211 10          0 011123445


Q ss_pred             HHHHHHHHhccCCCCCCCC-HHHHHH
Q 006019          607 TLGELIKSCVRADPEKRPT-MRDIAA  631 (664)
Q Consensus       607 ~l~~l~~~Cl~~~P~~RPs-~~ev~~  631 (664)
                      .+.+++.+||+.+|.+||+ ++++++
T Consensus       236 ~~~~li~~~l~~~p~~R~~~~~~~l~  261 (267)
T PHA03390        236 NANDFVQSMLKYNINYRLTNYNEIIK  261 (267)
T ss_pred             HHHHHHHHHhccChhhCCchHHHHhc
Confidence            6899999999999999995 688764

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.97  E-value=1.3e-30  Score=289.07  Aligned_cols=255  Identities=14%  Similarity=0.169  Sum_probs=173.5

Q ss_pred             hhhhcccccCCCeEEEEEEECC--CcEEEEEEeee------------cccCCCchhHHHHHHHHHHHHhccCCCcccceE
Q 006019          372 EDFSNVIGSSPIGTVYKGTLSN--GVEIAVASVSV------------ASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI  437 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~~~--~~~vavk~~~~------------~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~  437 (664)
                      +.+.+.||+|+||.||++.++.  +...++|.+..            .............|.+|+++|++++|+|||+++
T Consensus       150 Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~  229 (501)
T PHA03210        150 FRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENILKIE  229 (501)
T ss_pred             cEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCcCcEe
Confidence            3445889999999999987643  22222221100            000001123456789999999999999999999


Q ss_pred             EEEecCCCceeEEEEEecCCCChhhhhcccC---CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC
Q 006019          438 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE---SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY  514 (664)
Q Consensus       438 g~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~---~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~  514 (664)
                      +++...+  ..++|+||+. ++|.+++....   ..........+|+.|++.||+|||+++  |+||||||+|||++.++
T Consensus       230 ~~~~~~~--~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~g--IiHrDLKP~NILl~~~~  304 (501)
T PHA03210        230 EILRSEA--NTYMITQKYD-FDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDKK--LIHRDIKLENIFLNCDG  304 (501)
T ss_pred             EEEEECC--eeEEEEeccc-cCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEECCCC
Confidence            9998877  6799999985 57777764321   122334566789999999999999998  99999999999999999


Q ss_pred             ceEecccCchhhhhh----------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCC-ccCCCCChHHHHHHHh
Q 006019          515 AAKLSDLSFWNEIAM----------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLP-YLVDNGSLEDWAADYL  583 (664)
Q Consensus       515 ~~kl~DfGla~~~~~----------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P-~~~~~~~~~~~~~~~~  583 (664)
                      .+||+|||+++....          ....+.+||......++.++|||||||++|||++|+.+ +..............+
T Consensus       305 ~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~p~~~~~~~~~~~~~~~~  384 (501)
T PHA03210        305 KIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFCPIGDGGGKPGKQLLKII  384 (501)
T ss_pred             CEEEEeCCCceecCcccccccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCccCCCCCHHHHHHHHH
Confidence            999999999976532          22344578888777889999999999999999998754 4322222222222222


Q ss_pred             cCCCCC-ccccCC-----------CCC----CCC-----HHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          584 SGVQPL-QQFVDP-----------TLS----SFD-----EEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       584 ~~~~~~-~~~~d~-----------~~~----~~~-----~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ...... .++.++           .+.    ..+     ......+.+++.+|++.||++||++.|+++
T Consensus       385 ~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~li~kmL~~DP~~Rpsa~elL~  453 (501)
T PHA03210        385 DSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVPPLIRNLGLPADFEYPLVKMLTFDWHLRPGAAELLA  453 (501)
T ss_pred             HhcccChhhcCCcHHHHHHHhhhhhcccCccchhhHHHhcCCChHHHHHHHHHhccCcccCcCHHHHhh
Confidence            111000 000000           000    000     011234677899999999999999999986

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=2.4e-31  Score=276.68  Aligned_cols=237  Identities=17%  Similarity=0.221  Sum_probs=184.3

Q ss_pred             hcccccCCCeEEEEEEECCCcE-EEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLSNGVE-IAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~~~~~-vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      ...||.|+||.||||..++... .|.|.+....     ....++|+-|+++|..++||+||+|++.|...+  ..+++.|
T Consensus        37 iGELGDGAFGKVyKA~nket~~lAAaKvIetks-----eEELEDylVEIeILa~CdHP~ivkLl~ayy~en--kLwiliE  109 (1187)
T KOG0579|consen   37 IGELGDGAFGKVYKAVNKETKLLAAAKVIETKS-----EEELEDYLVEIEILAECDHPVIVKLLSAYYFEN--KLWILIE  109 (1187)
T ss_pred             HhhhcCccchhhhhhhcccchhhhhhhhhcccc-----hhHHhhhhhhhhhhhcCCChHHHHHHHHHhccC--ceEEEEe
Confidence            3569999999999999765433 3455554333     234578999999999999999999999887766  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh-----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA-----  528 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~-----  528 (664)
                      ||.||.....+-. -+..|...+..-++.+++.||.|||+.+  |||||||+.|||++-+|.++++|||.+....     
T Consensus       110 FC~GGAVDaimlE-L~r~LtE~QIqvvc~q~ldALn~LHs~~--iIHRDLKAGNiL~TldGdirLADFGVSAKn~~t~qk  186 (1187)
T KOG0579|consen  110 FCGGGAVDAIMLE-LGRVLTEDQIQVVCYQVLDALNWLHSQN--IIHRDLKAGNILLTLDGDIRLADFGVSAKNKSTRQK  186 (1187)
T ss_pred             ecCCchHhHHHHH-hccccchHHHHHHHHHHHHHHHHHhhcc--hhhhhccccceEEEecCcEeeecccccccchhHHhh
Confidence            9999999877642 3567999999999999999999999999  9999999999999999999999999865432     


Q ss_pred             ----hhhhhccccccc-----CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 006019          529 ----MAEMAATSKKLS-----SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  599 (664)
Q Consensus       529 ----~~~~~~~~pe~~-----~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  599 (664)
                          .+..++++||..     ....|..++|||||||.|.||..+.+|..  ..+.......+..       -..|++. 
T Consensus       187 RDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHh--elnpMRVllKiaK-------SePPTLl-  256 (1187)
T KOG0579|consen  187 RDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHH--ELNPMRVLLKIAK-------SEPPTLL-  256 (1187)
T ss_pred             hccccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCcc--ccchHHHHHHHhh-------cCCCccc-
Confidence                234566677654     35568999999999999999999999963  2222222211111       1122222 


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          600 FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       600 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .|......+.+++.+|+.++|+.||++.++++
T Consensus       257 qPS~Ws~~F~DfLk~cL~Knp~~Rp~aaqll~  288 (1187)
T KOG0579|consen  257 QPSHWSRSFSDFLKRCLVKNPRNRPPAAQLLK  288 (1187)
T ss_pred             CcchhhhHHHHHHHHHHhcCCccCCCHHHHhh
Confidence            34455677999999999999999999998875

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.97  E-value=1.4e-30  Score=274.63  Aligned_cols=255  Identities=16%  Similarity=0.191  Sum_probs=190.9

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCC---CceeE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE---PFTRM  449 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~---~~~~~  449 (664)
                      +.+.||+|+||.||+|+.. ++..+++|++......   ....+.+.+|+++++.++|+||+++++++...+   ....+
T Consensus         4 i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (330)
T cd07834           4 LLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDD---LIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVY   80 (330)
T ss_pred             eeeeecCCCCeEEEEEEeCCCCcEEEEEeecccccc---chhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceE
Confidence            4578999999999999975 4889999988653321   234567999999999999999999999987653   11468


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                      +||||++ ++|.++++.  ...+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.++|+|||++.....
T Consensus        81 lv~e~~~-~~l~~~l~~--~~~l~~~~~~~i~~~l~~~l~~LH~~g--i~H~dlkp~nili~~~~~~~L~dfg~~~~~~~  155 (330)
T cd07834          81 IVTELME-TDLHKVIKS--PQPLTDDHIQYFLYQILRGLKYLHSAN--VIHRDLKPSNILVNSNCDLKICDFGLARGVDP  155 (330)
T ss_pred             EEecchh-hhHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEcCCCCEEEcccCceEeecc
Confidence            9999998 589888863  337999999999999999999999998  99999999999999999999999999876543


Q ss_pred             hh------------hhcccccccCCC-CCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCC--------
Q 006019          530 AE------------MAATSKKLSSAP-SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP--------  588 (664)
Q Consensus       530 ~~------------~~~~~pe~~~~~-~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~--------  588 (664)
                      ..            ..+.+||..... .++.++||||||+++|||+||+.||....  ..+...........        
T Consensus       156 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~--~~~~~~~i~~~~~~~~~~~~~~  233 (330)
T cd07834         156 DEDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRD--YIDQLNLIVEVLGTPSEEDLKF  233 (330)
T ss_pred             cccccccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCC--HHHHHHHHHHhcCCCChhHhhh
Confidence            21            124567776655 78899999999999999999999994322  12222211111000        


Q ss_pred             -----CccccC---C----CCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH--HHhhhC
Q 006019          589 -----LQQFVD---P----TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI--LREITG  638 (664)
Q Consensus       589 -----~~~~~d---~----~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~--L~~i~~  638 (664)
                           ....+.   .    ............+.+++.+||+.+|++||++.+++..  ++.+..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~~~  297 (330)
T cd07834         234 ITSEKARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEALAHPYLAQLHD  297 (330)
T ss_pred             ccccchhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHccCChhhCCCHHHHHhCccHHhhcc
Confidence                 000000   0    0000111234568899999999999999999999984  666554

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=8.1e-31  Score=275.58  Aligned_cols=237  Identities=21%  Similarity=0.318  Sum_probs=186.4

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +...||+|.|+.|..|+.. ++..||+|.+.......   ...+.+.+|+++|+.++|||||+++.+.....  ..|+||
T Consensus        60 i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~---~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~--~lylV~  134 (596)
T KOG0586|consen   60 IIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNP---SKRQKLGREVDIMKSLNHPNIVKLFSVIETEA--TLYLVM  134 (596)
T ss_pred             eeeeeccceeEEEEeeEecCCCceEEEEEehhcccCh---HHHHHHHHHHHHHHhcCCcceeeeeeeeeecc--eeEEEE
Confidence            3467999999999999954 68999999887654332   33355899999999999999999999998777  789999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhhh-
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  531 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~~-  531 (664)
                      ||+.+|.+++++..  ...........+..|+.+|++|+|++.  |||||||++|||||.++++||+|||++..+.... 
T Consensus       135 eya~~ge~~~yl~~--~gr~~e~~ar~~F~q~vsaveYcH~k~--ivHrdLk~eNilL~~~mnikIaDfgfS~~~~~~~~  210 (596)
T KOG0586|consen  135 EYASGGELFDYLVK--HGRMKEKEARAKFRQIVSAVEYCHSKN--IVHRDLKAENILLDENMNIKIADFGFSTFFDYGLM  210 (596)
T ss_pred             EeccCchhHHHHHh--cccchhhhhhhhhHHHHHHHHHHhhcc--eeccccchhhcccccccceeeeccccceeeccccc
Confidence            99999999999963  334444777788999999999999999  9999999999999999999999999998775433 


Q ss_pred             -------hhcccccccCCCC-CCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          532 -------MAATSKKLSSAPS-ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       532 -------~~~~~pe~~~~~~-~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                             ..+.+||++.+.+ ..+++|+||+||++|-|+.|..||++  ..+.+.-...+.+...+..           -
T Consensus       211 lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG--~~lk~Lr~rvl~gk~rIp~-----------~  277 (596)
T KOG0586|consen  211 LQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDG--QNLKELRPRVLRGKYRIPF-----------Y  277 (596)
T ss_pred             ccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCC--cccccccchheeeeecccc-----------e
Confidence                   2345677766544 57899999999999999999999943  3333322222222111111           1


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      ...+..+++++.+..+|.+|++++++.+.
T Consensus       278 ms~dce~lLrk~lvl~Pskr~~~dqim~~  306 (596)
T KOG0586|consen  278 MSCDCEDLLRKFLVLNPSKRGPCDQIMKD  306 (596)
T ss_pred             eechhHHHHHHhhccCccccCCHHHhhhh
Confidence            11235689999999999999999988764

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.97  E-value=2.7e-30  Score=272.07  Aligned_cols=248  Identities=15%  Similarity=0.169  Sum_probs=181.2

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||+|... ++..+|+|++......   ....+.+.+|++++++++||||+++.+++...+. ..++|+|
T Consensus        15 ~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~-~~~lv~e   90 (328)
T cd07856          15 LQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFST---PVLAKRTYRELKLLKHLRHENIISLSDIFISPLE-DIYFVTE   90 (328)
T ss_pred             EEeecccCCeEEEEEEECCCCCEEEEEEecccccc---cchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCC-cEEEEee
Confidence            378999999999999854 7889999988643221   2234678899999999999999999999865332 5689999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      |+ +++|.++++.   ..+.+.....++.+++.||+|||+.+  ++||||+|+||++++++.+||+|||+++.....   
T Consensus        91 ~~-~~~L~~~~~~---~~~~~~~~~~~~~ql~~aL~~LH~~~--iiH~dl~p~Nili~~~~~~~l~dfg~~~~~~~~~~~  164 (328)
T cd07856          91 LL-GTDLHRLLTS---RPLEKQFIQYFLYQILRGLKYVHSAG--VVHRDLKPSNILINENCDLKICDFGLARIQDPQMTG  164 (328)
T ss_pred             hh-ccCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHHEeECCCCCEEeCccccccccCCCcCC
Confidence            99 5689888752   35788888899999999999999998  999999999999999999999999998754321   


Q ss_pred             ---hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCC-------------ChHHHHHHHhcCCC--CCcc
Q 006019          531 ---EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNG-------------SLEDWAADYLSGVQ--PLQQ  591 (664)
Q Consensus       531 ---~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~-------------~~~~~~~~~~~~~~--~~~~  591 (664)
                         ...+.+||.... ..++.++|||||||++|||+||+.||.....             ...++.........  ....
T Consensus       165 ~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (328)
T cd07856         165 YVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVINTICSENTLRFVQS  244 (328)
T ss_pred             CcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhccchhhHHHHhh
Confidence               223456776543 5678899999999999999999999843221             01111111111000  0000


Q ss_pred             ccCCCC---CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          592 FVDPTL---SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       592 ~~d~~~---~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      ......   ....+.....+.+++.+||+.+|++||++.+++..
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~ell~~  288 (328)
T cd07856         245 LPKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEALAH  288 (328)
T ss_pred             ccccCCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            000000   00011234678899999999999999999988664

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.97  E-value=1.9e-30  Score=276.28  Aligned_cols=257  Identities=21%  Similarity=0.293  Sum_probs=185.4

Q ss_pred             cccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCC----CceeEE
Q 006019          376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE----PFTRMM  450 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~----~~~~~l  450 (664)
                      +.||+|+||.||+|+. ..|+.||||..+.....    ...+...+|+++|++++|+|||+++++-.+..    .....+
T Consensus        19 e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~----r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vl   94 (732)
T KOG4250|consen   19 ERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSL----RPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVL   94 (732)
T ss_pred             hhhcCCccceeeeecccccccchhHHhhhhhccc----chHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceE
Confidence            6799999999999994 57999999998764422    23466789999999999999999998865543    225689


Q ss_pred             EEEecCCCChhhhhccc-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEec--CCC--ceEecccCchh
Q 006019          451 VFEYAPNGTLFEHIHIK-ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT--EDY--AAKLSDLSFWN  525 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~-~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld--~~~--~~kl~DfGla~  525 (664)
                      |||||++|||+..|..- +...|+....+.+..+++.||.|||+++  |+||||||.||++-  +++  .-||+|||.||
T Consensus        95 vmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn~--IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Ar  172 (732)
T KOG4250|consen   95 VMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLRENG--IVHRDLKPGNIVLQIGEDGQSIYKLTDFGAAR  172 (732)
T ss_pred             EEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHcC--ceeccCCCCcEEEeecCCCceEEeeecccccc
Confidence            99999999999999743 4567999999999999999999999999  99999999999984  334  56999999999


Q ss_pred             hhhhhh--------hhcccccccC-CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCC--hHHHHHHHhcCCC-CCcccc
Q 006019          526 EIAMAE--------MAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGS--LEDWAADYLSGVQ-PLQQFV  593 (664)
Q Consensus       526 ~~~~~~--------~~~~~pe~~~-~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~--~~~~~~~~~~~~~-~~~~~~  593 (664)
                      .+....        ..+..|+.+. ...++..+|.|||||++||.+||..||....+.  ..+.++....... ......
T Consensus       173 el~d~s~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p~~~pk~~~~~~~~~~tkkp~~v~i~~  252 (732)
T KOG4250|consen  173 ELDDNSLFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFIPFGGPKNNKEIMWHIITKKPSGVAIGA  252 (732)
T ss_pred             cCCCCCeeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCCcCCCccccchhhhhhhccCCCceeEee
Confidence            886443        2344566665 477888999999999999999999999644332  3333333222211 111011


Q ss_pred             CCC---------CCCCC----HHHHHHHHHHHHHhccCCCCCCC--CHHHHHHHHHhhhC
Q 006019          594 DPT---------LSSFD----EEQLETLGELIKSCVRADPEKRP--TMRDIAAILREITG  638 (664)
Q Consensus       594 d~~---------~~~~~----~~~~~~l~~l~~~Cl~~~P~~RP--s~~ev~~~L~~i~~  638 (664)
                      ++.         ..+++    ......+..++...+..+|++|-  .+.+....+.+|+.
T Consensus       253 ~~~eNgpv~~s~~lP~p~~Ls~~l~~~~~kwLa~~L~~~~~~~~~~~~~~~Fa~~~dIL~  312 (732)
T KOG4250|consen  253 QEEENGPVEWSSTLPQPNHLSRGLATRLTKWLASMLEWNPRKRGHEGFDRFFAEVDDILN  312 (732)
T ss_pred             ecccCCceeeeccCCCcccccHHHHhhhhHHHHHHHhhhHHHhCCCCcchHHHHHHHHHh
Confidence            110         01111    22223344555555566677776  66666666666654

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.97  E-value=2.7e-30  Score=273.82  Aligned_cols=245  Identities=16%  Similarity=0.186  Sum_probs=178.0

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC-------
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP-------  445 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~-------  445 (664)
                      +.+.||.|+||.||+|... ++..|++|++.....     ...+.+.+|++++++++||||+++++++.....       
T Consensus         9 ~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~-----~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~   83 (342)
T cd07854           9 DLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDP-----QSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVG   83 (342)
T ss_pred             EEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCC-----chHHHHHHHHHHHHhcCCCcchhhHhhhcccccccccccc
Confidence            3478999999999999964 588999998865432     234678899999999999999999987654321       


Q ss_pred             -----ceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEec-CCCceEec
Q 006019          446 -----FTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT-EDYAAKLS  519 (664)
Q Consensus       446 -----~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld-~~~~~kl~  519 (664)
                           ...++|+||++ ++|.+++.   ...+++.....++.|++.||.|||+.+  ++||||||+||+++ ++..+|++
T Consensus        84 ~~~~~~~~~lv~e~~~-~~L~~~~~---~~~l~~~~~~~~~~qi~~aL~~LH~~g--ivH~dikp~Nili~~~~~~~kl~  157 (342)
T cd07854          84 SLTELNSVYIVQEYME-TDLANVLE---QGPLSEEHARLFMYQLLRGLKYIHSAN--VLHRDLKPANVFINTEDLVLKIG  157 (342)
T ss_pred             cccccceEEEEeeccc-ccHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHHEEEcCCCceEEEC
Confidence                 14689999997 58988774   235889999999999999999999998  99999999999998 45688999


Q ss_pred             ccCchhhhhh------------hhhhcccccccC-CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCC
Q 006019          520 DLSFWNEIAM------------AEMAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV  586 (664)
Q Consensus       520 DfGla~~~~~------------~~~~~~~pe~~~-~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~  586 (664)
                      |||+++....            ....+.+||... ...++.++|||||||++|||++|+.||....  ..+.........
T Consensus       158 dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~--~~~~~~~~~~~~  235 (342)
T cd07854         158 DFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAH--ELEQMQLILESV  235 (342)
T ss_pred             CcccceecCCccccccccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHhc
Confidence            9999875421            122345677543 3457889999999999999999999994322  111111111100


Q ss_pred             C------------CCccc-----cCCCC--CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          587 Q------------PLQQF-----VDPTL--SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       587 ~------------~~~~~-----~d~~~--~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .            .....     ..+..  ....+....++.+++.+||+.||++||++.+++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ell~  299 (342)
T cd07854         236 PVVREEDRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTFNPMDRLTAEEALM  299 (342)
T ss_pred             CCCChHHhhhhhhhhhhhhhhcccccCCCHHHHccCCCHHHHHHHHHHhCCCchhccCHHHHhC
Confidence            0            00000     00000  0001123356889999999999999999999984

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.97  E-value=7.5e-30  Score=269.34  Aligned_cols=248  Identities=16%  Similarity=0.167  Sum_probs=178.5

Q ss_pred             hhcccccCCCeEEEEEEEC-C--CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecC--CCce
Q 006019          374 FSNVIGSSPIGTVYKGTLS-N--GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEE--EPFT  447 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~--~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~--~~~~  447 (664)
                      +.+.||+|+||.||+++.. .  +..+|+|++......   ....+.+.+|+++++++ +||||+++++++...  ....
T Consensus         4 ~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~---~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~   80 (332)
T cd07857           4 LIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSK---KILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNE   80 (332)
T ss_pred             EEEEccccCCeEEEEEEeCCCCcCceEEEEEecccccc---chhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCc
Confidence            4578999999999999965 3  678999988643211   22356788999999999 599999999876432  1124


Q ss_pred             eEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhh
Q 006019          448 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~  527 (664)
                      .++++||+. ++|.+++.  ....+++..+..++.|++.||+|||+.+  ++||||||+||++++++.+||+|||+++..
T Consensus        81 ~~~~~e~~~-~~L~~~l~--~~~~~~~~~~~~~~~qi~~aL~~LH~~g--ivH~dlkp~Nili~~~~~~kl~Dfg~a~~~  155 (332)
T cd07857          81 LYLYEELME-ADLHQIIR--SGQPLTDAHFQSFIYQILCGLKYIHSAN--VLHRDLKPGNLLVNADCELKICDFGLARGF  155 (332)
T ss_pred             EEEEEeccc-CCHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHHeEEcCCCCEEeCcCCCceec
Confidence            678889886 68988885  3456899999999999999999999998  999999999999999999999999998754


Q ss_pred             hh-------------hhhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCC------
Q 006019          528 AM-------------AEMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ------  587 (664)
Q Consensus       528 ~~-------------~~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~------  587 (664)
                      ..             ....+.+||.... ..++.++|||||||++||+++|+.||...+  ........+....      
T Consensus       156 ~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~  233 (332)
T cd07857         156 SENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKD--YVDQLNQILQVLGTPDEET  233 (332)
T ss_pred             ccccccccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCCC--HHHHHHHHHHHhCCCCHHH
Confidence            31             1123456775543 457889999999999999999999984322  1111111110000      


Q ss_pred             -------C-------CccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          588 -------P-------LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       588 -------~-------~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                             .       ........+....+.....+.+++.+|++.+|++||++.+++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~ll~  291 (332)
T cd07857         234 LSRIGSPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKRISVEEALE  291 (332)
T ss_pred             HHhhhhhhHHHHHHhccccCCcchHhhCCCCCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence                   0       0000000000011112356889999999999999999999864

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.97  E-value=3.1e-30  Score=273.47  Aligned_cols=246  Identities=15%  Similarity=0.192  Sum_probs=180.9

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC----ceeE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----FTRM  449 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~----~~~~  449 (664)
                      .+.||+|+||.||+|+.. ++..+|+|++......   ......+.+|+.++++++|+|++++++++...+.    ...+
T Consensus        20 ~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~   96 (343)
T cd07851          20 LSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQS---AIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDFQDVY   96 (343)
T ss_pred             EEEeccCCceEEEEEEECCCCcEEEEEecccccch---hhHHHHHHHHHHHHHhccCCCHHHHHHHhhccccccccccEE
Confidence            478999999999999975 5788999987543211   2234567889999999999999999987765442    1368


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                      +|+||+ +++|.+++..   ..+++..+..++.+++.|++|||+.+  ++||||||+||++++++.+||+|||++.....
T Consensus        97 lv~e~~-~~~L~~~~~~---~~l~~~~~~~~~~ql~~aL~~LH~~g--i~H~dlkp~Nill~~~~~~kL~dfg~~~~~~~  170 (343)
T cd07851          97 LVTHLM-GADLNNIVKC---QKLSDDHIQFLVYQILRGLKYIHSAG--IIHRDLKPSNIAVNEDCELKILDFGLARHTDD  170 (343)
T ss_pred             EEEecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHeEECCCCCEEEccccccccccc
Confidence            999999 5699988853   46899999999999999999999998  99999999999999999999999999876532


Q ss_pred             h------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCc-c----------
Q 006019          530 A------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQ-Q----------  591 (664)
Q Consensus       530 ~------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~-~----------  591 (664)
                      .      ...+.+||.... ...+.++|||||||++||++||+.||....  ..+............. .          
T Consensus       171 ~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~  248 (343)
T cd07851         171 EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSD--HIDQLKRIMNLVGTPDEELLQKISSESA  248 (343)
T ss_pred             cccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHHhcCCCCHHHHhhccchhH
Confidence            2      123445665432 356889999999999999999999994322  2222222211100000 0          


Q ss_pred             --ccC-------CCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          592 --FVD-------PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       592 --~~d-------~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                        ++.       +............+.+++.+|++.+|++|||+.+|++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt~~ell~  297 (343)
T cd07851         249 RNYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAEALA  297 (343)
T ss_pred             HHHHHhccccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCCCHHHHhc
Confidence              000       0000000112457889999999999999999999876

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.97  E-value=1.5e-31  Score=299.49  Aligned_cols=236  Identities=19%  Similarity=0.308  Sum_probs=183.2

Q ss_pred             cccccCCCeEEEEEE-ECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      +.||.|.||.||-|. .++|...|+|-++.....   ....+...+|+.++..++|||+|+++|+-.+.+  ..+|.|||
T Consensus      1241 ~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~---~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRe--kv~IFMEy 1315 (1509)
T KOG4645|consen 1241 NFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSD---HKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHRE--KVYIFMEY 1315 (1509)
T ss_pred             cccCCcceeeeEEeecCCccchhhhhhhhcCccc---cccCcchHHHHHHHHhccCccccccCceeecHH--HHHHHHHH
Confidence            689999999999999 667889999988654432   233456789999999999999999999988877  67999999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh-----
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM-----  529 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~-----  529 (664)
                      |++|+|.+.+.  .+...+......+..|++.|++|||+.+  |||||+||.||+||.+|.+|.+|||.|+.+..     
T Consensus      1316 C~~GsLa~ll~--~gri~dE~vt~vyt~qll~gla~LH~~g--IVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~ 1391 (1509)
T KOG4645|consen 1316 CEGGSLASLLE--HGRIEDEMVTRVYTKQLLEGLAYLHEHG--IVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNAQTM 1391 (1509)
T ss_pred             hccCcHHHHHH--hcchhhhhHHHHHHHHHHHHHHHHHhcC--ceecCCCccceeeecCCcEEeecccceeEecCchhcC
Confidence            99999999985  3344556666667889999999999999  99999999999999999999999999886632     


Q ss_pred             --------hhhhcccccccCCCC---CCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 006019          530 --------AEMAATSKKLSSAPS---ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       530 --------~~~~~~~pe~~~~~~---~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                              ++..|++||...+..   -.-+.||||+|||++||+||++||..-+   .+|+-.+-        +--...+
T Consensus      1392 ~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~d---ne~aIMy~--------V~~gh~P 1460 (1509)
T KOG4645|consen 1392 PGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELD---NEWAIMYH--------VAAGHKP 1460 (1509)
T ss_pred             CHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhcc---chhHHHhH--------HhccCCC
Confidence                    233556777665433   3457899999999999999999994222   12321111        1111223


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ..|+....+-.+++.+|+..||++|-++.++++
T Consensus      1461 q~P~~ls~~g~dFle~Cl~~dP~~Rw~~~qlle 1493 (1509)
T KOG4645|consen 1461 QIPERLSSEGRDFLEHCLEQDPKMRWTASQLLE 1493 (1509)
T ss_pred             CCchhhhHhHHHHHHHHHhcCchhhhHHHHHHH
Confidence            445556677889999999999999976664443

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.96  E-value=7.9e-30  Score=255.75  Aligned_cols=215  Identities=18%  Similarity=0.231  Sum_probs=168.3

Q ss_pred             CCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEecCCCC
Q 006019          381 SPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGT  459 (664)
Q Consensus       381 G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey~~~Gs  459 (664)
                      |.||.||+++. .+++.+|+|++....          .+.+|...+....||||+++++++.+.+  ..++||||+++|+
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~----------~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~lv~e~~~~~~   71 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSS----------EYSRERLTIIPHCVPNMVCLHKYIVSED--SVFLVLQHAEGGK   71 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchh----------hhhhHHHHHHhcCCCceeehhhheecCC--eEEEEEecCCCCC
Confidence            88999999996 468899999885432          2344555566667999999999998776  6799999999999


Q ss_pred             hhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh------hhh
Q 006019          460 LFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA------EMA  533 (664)
Q Consensus       460 L~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~------~~~  533 (664)
                      |.+++..  ...+++.....++.+++.||+|||+.+  ++||||||+||++++++.++++|||.+......      ...
T Consensus        72 L~~~l~~--~~~l~~~~~~~~~~ql~~~l~~lH~~~--i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~  147 (237)
T cd05576          72 LWSHISK--FLNIPEECVKRWAAEMVVALDALHREG--IVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSCDGEAVENM  147 (237)
T ss_pred             HHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHhCC--eeccCCCHHHEEEcCCCCEEEecccchhccccccccCCcCcc
Confidence            9998863  345899999999999999999999988  999999999999999999999999987655321      123


Q ss_pred             cccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHH
Q 006019          534 ATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIK  613 (664)
Q Consensus       534 ~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~  613 (664)
                      +.+||.......+.++||||+|+++|||++|+.|+......        ...   ...      ...+......+.+++.
T Consensus       148 y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~~--------~~~---~~~------~~~~~~~~~~~~~li~  210 (237)
T cd05576         148 YCAPEVGGISEETEACDWWSLGAILFELLTGKTLVECHPSG--------INT---HTT------LNIPEWVSEEARSLLQ  210 (237)
T ss_pred             ccCCcccCCCCCCchhhHHHHHHHHHHHHHCcchhhcCchh--------ccc---ccc------cCCcccCCHHHHHHHH
Confidence            56788776677888999999999999999999887321100        000   000      0112223456889999


Q ss_pred             HhccCCCCCCCCHHH
Q 006019          614 SCVRADPEKRPTMRD  628 (664)
Q Consensus       614 ~Cl~~~P~~RPs~~e  628 (664)
                      +|++.||++||++.+
T Consensus       211 ~~l~~dp~~R~~~~~  225 (237)
T cd05576         211 QLLQFNPTERLGAGV  225 (237)
T ss_pred             HHccCCHHHhcCCCc
Confidence            999999999999743

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.96  E-value=3.1e-29  Score=286.62  Aligned_cols=144  Identities=24%  Similarity=0.297  Sum_probs=126.2

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|... ++..||+|++.......  ......+.+|+.+++.++|+||+++++++...+  ..++||
T Consensus         8 i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~--~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~--~~~lVm   83 (669)
T cd05610           8 IVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMIN--KNMVHQVQAERDALALSKSPFIVHLYYSLQSAN--NVYLVM   83 (669)
T ss_pred             EEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccC--HHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECC--EEEEEE
Confidence            3478999999999999975 68899999986543322  344567899999999999999999999988776  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchh
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN  525 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~  525 (664)
                      ||+++|+|.++++.  ...+++....+|+.+|+.||+|||+++  |+||||||+|||++.++.+||+|||+++
T Consensus        84 Ey~~g~~L~~li~~--~~~l~~~~~~~i~~qil~aL~yLH~~g--IiHrDLKP~NILl~~~g~vkL~DFGls~  152 (669)
T cd05610          84 EYLIGGDVKSLLHI--YGYFDEEMAVKYISEVALALDYLHRHG--IIHRDLKPDNMLISNEGHIKLTDFGLSK  152 (669)
T ss_pred             eCCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCC--EEeCCccHHHEEEcCCCCEEEEeCCCCc
Confidence            99999999999863  345888999999999999999999998  9999999999999999999999999876

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.96  E-value=5.5e-31  Score=249.27  Aligned_cols=249  Identities=20%  Similarity=0.288  Sum_probs=183.8

Q ss_pred             CCCHHHHHHHHhhhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHh-ccCCCcccceEE
Q 006019          361 KLKRSELEAACEDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLS-KVNHKNFVNLIG  438 (664)
Q Consensus       361 ~~~~~el~~~~~~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~-~l~H~niv~l~g  438 (664)
                      .|+.++++..     ..||.|+||+|+|-.++ .|+..|||++.....    ....++++.|.+... .-+.||||+++|
T Consensus        60 ~F~~~~Lqdl-----g~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~----~keq~rll~e~d~~mks~~cp~IVkfyG  130 (361)
T KOG1006|consen   60 TFTSDNLQDL-----GEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNI----EKEQKRLLMEHDTVMKSSNCPNIVKFYG  130 (361)
T ss_pred             ccccchHHHH-----HHhcCCcchhhhhhhcCccCcEEEEEEeeeccc----hHHHHHHHHHHHHHHhhcCCcHHHHHhh
Confidence            3555555443     46999999999999865 699999999976543    234577888888654 457999999999


Q ss_pred             EEecCCCceeEEEEEecCCCChhh---hhcccCCCCCCHHHHHHHHHHHHHHHHHhh-cCCCCeEEeCcCCCCeEecCCC
Q 006019          439 FCEEEEPFTRMMVFEYAPNGTLFE---HIHIKESEHLDWGMRLRIAMGMAYCLEHMH-QLNPPIAHNYLNSSAVHLTEDY  514 (664)
Q Consensus       439 ~~~~~~~~~~~lV~Ey~~~GsL~~---~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH-~~~~~ivHrDLk~~NILld~~~  514 (664)
                      .+..++  ..++.||.|.- ||..   +++......++....-.|+.-...||.||- ...  |||||+||+|||||..|
T Consensus       131 a~F~EG--dcWiCMELMd~-SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~lk--iIHRDvKPSNILldr~G  205 (361)
T KOG1006|consen  131 ALFSEG--DCWICMELMDI-SLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEELK--IIHRDVKPSNILLDRHG  205 (361)
T ss_pred             hhhcCC--ceeeeHHHHhh-hHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHHhh--hhhccCChhheEEecCC
Confidence            998777  67999999964 5543   344445566888888888889999999995 455  99999999999999999


Q ss_pred             ceEecccCchhhhhhh--------hhhcccccccC--CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhc
Q 006019          515 AAKLSDLSFWNEIAMA--------EMAATSKKLSS--APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLS  584 (664)
Q Consensus       515 ~~kl~DfGla~~~~~~--------~~~~~~pe~~~--~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~  584 (664)
                      .+|++|||++..+..+        -..+.+||...  ...+..+|||||+||.|+|+.||+.||..-+ +..+.+..+..
T Consensus       206 ~vKLCDFGIcGqLv~SiAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~-svfeql~~Vv~  284 (361)
T KOG1006|consen  206 DVKLCDFGICGQLVDSIAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKWD-SVFEQLCQVVI  284 (361)
T ss_pred             CEeeecccchHhHHHHHHhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchHH-HHHHHHHHHHc
Confidence            9999999998766322        12345666542  2247889999999999999999999994221 23333333333


Q ss_pred             CCCCCccccCCCCCCCCH---HHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          585 GVQPLQQFVDPTLSSFDE---EQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       585 ~~~~~~~~~d~~~~~~~~---~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      +.        +.+...+.   +....+.+++..|+.+|-.+||...++.+.
T Consensus       285 gd--------pp~l~~~~~~~~~s~~~~~fintCl~Kd~~~Rpky~~Lk~~  327 (361)
T KOG1006|consen  285 GD--------PPILLFDKECVHYSFSMVRFINTCLIKDRSDRPKYDDLKKF  327 (361)
T ss_pred             CC--------CCeecCcccccccCHHHHHHHHHHhhcccccCcchhhhhcC
Confidence            31        21111222   234568899999999999999999987653

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.96  E-value=8.1e-30  Score=242.11  Aligned_cols=237  Identities=19%  Similarity=0.294  Sum_probs=176.7

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcccceEEEEecCCCceeEEEEE
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      ..||.|..|.|+|++++ .|..+|||.+.....    +...++++..++++.+-+ .|.||+.+||+..+.  ...+.||
T Consensus        98 ~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~N----kee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~--dV~IcMe  171 (391)
T KOG0983|consen   98 GDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGN----KEENKRILMDLDVVLKSHDCPYIVQCFGYFITNT--DVFICME  171 (391)
T ss_pred             HhhcCCCccceEEEEEcccceEEEEEeecccCC----HHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCc--hHHHHHH
Confidence            56999999999999975 588999998865432    334567778888777664 899999999998766  5578899


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~-~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      .|.- .+..++. +-...+.+...-++...+..||.||.+ ++  |+|||+||+|||+|+.|++|++|||++..+...  
T Consensus       172 lMs~-C~ekLlk-rik~piPE~ilGk~tva~v~AL~YLKeKH~--viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSkA  247 (391)
T KOG0983|consen  172 LMST-CAEKLLK-RIKGPIPERILGKMTVAIVKALYYLKEKHG--VIHRDVKPSNILLDERGNIKLCDFGISGRLVDSKA  247 (391)
T ss_pred             HHHH-HHHHHHH-HhcCCchHHhhhhhHHHHHHHHHHHHHhcc--eeecccCccceEEccCCCEEeecccccceeecccc
Confidence            8853 4444443 334557777777889999999999965 45  999999999999999999999999998766322  


Q ss_pred             ------hhhcccccccC---CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 006019          531 ------EMAATSKKLSS---APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  601 (664)
Q Consensus       531 ------~~~~~~pe~~~---~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  601 (664)
                            -..+.+||...   .+.|..++|||||||.++||.||+.||...+.+.. ....++.+ ++      |.+.. .
T Consensus       248 htrsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~tdFe-~ltkvln~-eP------P~L~~-~  318 (391)
T KOG0983|consen  248 HTRSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCKTDFE-VLTKVLNE-EP------PLLPG-H  318 (391)
T ss_pred             cccccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCCccHH-HHHHHHhc-CC------CCCCc-c
Confidence                  12345566543   45688899999999999999999999965444332 22233332 11      22211 1


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          602 EEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       602 ~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ......+.+++..|+++|+.+||...++++
T Consensus       319 ~gFSp~F~~fv~~CL~kd~r~RP~Y~~Ll~  348 (391)
T KOG0983|consen  319 MGFSPDFQSFVKDCLTKDHRKRPKYNKLLE  348 (391)
T ss_pred             cCcCHHHHHHHHHHhhcCcccCcchHHHhc
Confidence            113346889999999999999999987765

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.96  E-value=1e-29  Score=268.72  Aligned_cols=229  Identities=20%  Similarity=0.307  Sum_probs=180.7

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      |...+|.|+|+.|-++.. .+++..+||++....         .+-.+|+.++... +||||+++.+.+.+..  +.++|
T Consensus       326 ~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~---------~~~~~e~~~~~~~~~h~niv~~~~v~~~~~--~~~~v  394 (612)
T KOG0603|consen  326 FREELGEGSFSAVKYCESSPTDQEPAVKIISKRA---------DDNQDEIPISLLVRDHPNIVKSHDVYEDGK--EIYLV  394 (612)
T ss_pred             cccccCCCCccceeeeeccccccchhheeccccc---------cccccccchhhhhcCCCcceeecceecCCc--eeeee
Confidence            445699999999999985 468889999986542         1234567666665 6999999999998877  78999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEe-cCCCceEecccCchhhhhhh
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL-TEDYAAKLSDLSFWNEIAMA  530 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILl-d~~~~~kl~DfGla~~~~~~  530 (664)
                      ||++.+|-+.+.+....  ... ..+..|+.+|+.|+.|||+++  ||||||||+|||+ ++.+.++|+|||.++.....
T Consensus       395 ~e~l~g~ell~ri~~~~--~~~-~e~~~w~~~lv~Av~~LH~~g--vvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~  469 (612)
T KOG0603|consen  395 MELLDGGELLRRIRSKP--EFC-SEASQWAAELVSAVDYLHEQG--VVHRDLKPGNILLDGSAGHLRLTYFGFWSELERS  469 (612)
T ss_pred             ehhccccHHHHHHHhcc--hhH-HHHHHHHHHHHHHHHHHHhcC--eeecCCChhheeecCCCCcEEEEEechhhhCchh
Confidence            99999999988876332  222 667789999999999999998  9999999999999 58999999999999988654


Q ss_pred             ------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          531 ------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       531 ------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                            +..+.+||......+++++|+|||||+||||+||+.||...... .+. ...+..         +   .+....
T Consensus       470 ~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~-~ei-~~~i~~---------~---~~s~~v  535 (612)
T KOG0603|consen  470 CDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAG-IEI-HTRIQM---------P---KFSECV  535 (612)
T ss_pred             hcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCch-HHH-HHhhcC---------C---cccccc
Confidence                  23456799988899999999999999999999999999432221 111 111111         1   112445


Q ss_pred             HHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          605 LETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      ++.+++|+.+|++.||.+||+|.++...
T Consensus       536 S~~AKdLl~~LL~~dP~~Rl~~~~i~~h  563 (612)
T KOG0603|consen  536 SDEAKDLLQQLLQVDPALRLGADEIGAH  563 (612)
T ss_pred             CHHHHHHHHHhccCChhhCcChhhhccC
Confidence            5679999999999999999999988653

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=8.2e-30  Score=284.36  Aligned_cols=243  Identities=20%  Similarity=0.323  Sum_probs=172.2

Q ss_pred             HHHHhhhh--cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCC
Q 006019          368 EAACEDFS--NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE  444 (664)
Q Consensus       368 ~~~~~~~~--~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~  444 (664)
                      .+...+|.  ..||+||||.|||++.+ ||+.+|||++.....    ........+|+..+++++|||||+++..+.+..
T Consensus       475 SRY~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s----~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~  550 (1351)
T KOG1035|consen  475 SRYLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKAS----DKLYSKILREVKLLARLNHPNVVRYYSAWVEST  550 (1351)
T ss_pred             hhHhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchH----HHHHHHHHHHHHHHhhcCCcceeeeehhhhccC
Confidence            44555666  67999999999999965 899999999976541    234567889999999999999999875442210


Q ss_pred             C-------------------------------------------------------------------------------
Q 006019          445 P-------------------------------------------------------------------------------  445 (664)
Q Consensus       445 ~-------------------------------------------------------------------------------  445 (664)
                      .                                                                               
T Consensus       551 ~~~~~~ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~  630 (1351)
T KOG1035|consen  551 AELTVLEIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNL  630 (1351)
T ss_pred             CccccccccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCccccccccccccc
Confidence            0                                                                               


Q ss_pred             --------------------------------------ceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHH
Q 006019          446 --------------------------------------FTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYC  487 (664)
Q Consensus       446 --------------------------------------~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~g  487 (664)
                                                            ...||=||||+.-.|+++++.+.... .-....++.++|+.|
T Consensus       631 S~tS~~e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~~~-~~d~~wrLFreIlEG  709 (1351)
T KOG1035|consen  631 SNTSDSEGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHFNS-QRDEAWRLFREILEG  709 (1351)
T ss_pred             ccccccCCccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhcccch-hhHHHHHHHHHHHHH
Confidence                                                  11345677777766666665332211 234556789999999


Q ss_pred             HHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---------------------------hhhhccccccc
Q 006019          488 LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---------------------------AEMAATSKKLS  540 (664)
Q Consensus       488 L~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---------------------------~~~~~~~pe~~  540 (664)
                      |+|+|+.+  +|||||||.||+||++..+||+|||+|.....                           ++..|.+||..
T Consensus       710 LaYIH~~g--iIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll  787 (1351)
T KOG1035|consen  710 LAYIHDQG--IIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELL  787 (1351)
T ss_pred             HHHHHhCc--eeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHHh
Confidence            99999999  99999999999999999999999999987320                           11234467766


Q ss_pred             CCC---CCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCC---CCCHHHHHHHHHHHHH
Q 006019          541 SAP---SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS---SFDEEQLETLGELIKS  614 (664)
Q Consensus       541 ~~~---~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~~l~~l~~~  614 (664)
                      ...   .++.|.|+||+|||++||+.   ||. ..++-..    .+.+.      -++.++   .+.......-..++.+
T Consensus       788 ~~~~~~~Yn~KiDmYSLGIVlFEM~y---PF~-TsMERa~----iL~~L------R~g~iP~~~~f~~~~~~~e~slI~~  853 (1351)
T KOG1035|consen  788 SDTSSNKYNSKIDMYSLGIVLFEMLY---PFG-TSMERAS----ILTNL------RKGSIPEPADFFDPEHPEEASLIRW  853 (1351)
T ss_pred             cccccccccchhhhHHHHHHHHHHhc---cCC-chHHHHH----HHHhc------ccCCCCCCcccccccchHHHHHHHH
Confidence            544   48999999999999999986   552 1111111    11111      111111   1222233345689999


Q ss_pred             hccCCCCCCCCHHHHHH
Q 006019          615 CVRADPEKRPTMRDIAA  631 (664)
Q Consensus       615 Cl~~~P~~RPs~~ev~~  631 (664)
                      .++.||.+|||+.|+++
T Consensus       854 Ll~hdP~kRPtA~eLL~  870 (1351)
T KOG1035|consen  854 LLSHDPSKRPTATELLN  870 (1351)
T ss_pred             HhcCCCccCCCHHHHhh
Confidence            99999999999999876

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.96  E-value=1.8e-28  Score=245.27  Aligned_cols=231  Identities=23%  Similarity=0.336  Sum_probs=181.5

Q ss_pred             CCeEEEEEEECC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEecCCCCh
Q 006019          382 PIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTL  460 (664)
Q Consensus       382 ~~G~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey~~~GsL  460 (664)
                      +||.||+|...+ +..+++|++.......    ..+.|.+|++.+++++|+|++++++++....  ..++++||+++++|
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~----~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~--~~~l~~e~~~~~~L   74 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKK----KRERILREISILKKLKHPNIVRLYDVFEDED--KLYLVMEYCDGGDL   74 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEeccccccc----HHHHHHHHHHHHHhCCCCcHHHHHhheeeCC--EEEEEEeCCCCCCH
Confidence            589999999864 8899999986544322    1578999999999999999999999998766  67999999999999


Q ss_pred             hhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--------hh
Q 006019          461 FEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--------EM  532 (664)
Q Consensus       461 ~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--------~~  532 (664)
                      .+++....  .+++..+..++.++++++.|||+.+  ++|+||+|+||++++++.++++|||.+......        ..
T Consensus        75 ~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lh~~~--i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~  150 (244)
T smart00220       75 FDLLKKRG--RLSEDEARFYARQILSALEYLHSNG--IIHRDLKPENILLDEDGHVKLADFGLARQLDPGGLLTTFVGTP  150 (244)
T ss_pred             HHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHHcC--eecCCcCHHHeEECCCCcEEEccccceeeeccccccccccCCc
Confidence            99986432  3899999999999999999999998  999999999999999999999999998766432        22


Q ss_pred             hcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHH
Q 006019          533 AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELI  612 (664)
Q Consensus       533 ~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~  612 (664)
                      .+.+||.......+.++||||||++++|+++|+.||... .................        .........++.+++
T Consensus       151 ~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~i  221 (244)
T smart00220      151 EYMAPEVLLGKGYGKAVDVWSLGVILYELLTGKPPFPGD-DQLLELFKKIGKPKPPF--------PPPEWKISPEAKDLI  221 (244)
T ss_pred             CCCCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCC-CcHHHHHHHHhccCCCC--------ccccccCCHHHHHHH
Confidence            344677766677888999999999999999999998431 22222222221111100        000000335688999


Q ss_pred             HHhccCCCCCCCCHHHHHH
Q 006019          613 KSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       613 ~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .+||..+|++||++.++++
T Consensus       222 ~~~l~~~p~~Rp~~~~~~~  240 (244)
T smart00220      222 RKLLVKDPEKRLTAEEALQ  240 (244)
T ss_pred             HHHccCCchhccCHHHHhh
Confidence            9999999999999999986

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.96  E-value=5.8e-29  Score=222.38  Aligned_cols=245  Identities=17%  Similarity=0.244  Sum_probs=179.0

Q ss_pred             cccccCCCeEEEEEE-ECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      ++||+|.||+||||+ ++.+..||+|++......+   .......+|+-+++.++|+|||+++.+...+.  ..-+|+||
T Consensus         8 ekigegtygtvfkarn~~t~eivalkrvrldddde---gvpssalreicllkelkhknivrl~dvlhsdk--kltlvfe~   82 (292)
T KOG0662|consen    8 EKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDE---GVPSSALREICLLKELKHKNIVRLHDVLHSDK--KLTLVFEF   82 (292)
T ss_pred             HhhcCCcceeeEecccCCccceEEEEEEeccCCCC---CCcHHHHHHHHHHHHhhhcceeehhhhhccCc--eeEEeHHH
Confidence            579999999999999 4568899999998766544   33456789999999999999999999987766  67899999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhhhhhc
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAA  534 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~~~~~  534 (664)
                      |.. +|..+... -...++......++.|+.+||.|+|+.+  +.||||||.|.|++.+|+.|++|||+++.++.....+
T Consensus        83 cdq-dlkkyfds-lng~~d~~~~rsfmlqllrgl~fchshn--vlhrdlkpqnllin~ngelkladfglarafgipvrcy  158 (292)
T KOG0662|consen   83 CDQ-DLKKYFDS-LNGDLDPEIVRSFMLQLLRGLGFCHSHN--VLHRDLKPQNLLINRNGELKLADFGLARAFGIPVRCY  158 (292)
T ss_pred             hhH-HHHHHHHh-cCCcCCHHHHHHHHHHHHhhhhhhhhhh--hhhccCCcceEEeccCCcEEecccchhhhcCCceEee
Confidence            976 78777643 3456888999999999999999999999  9999999999999999999999999999876443222


Q ss_pred             ---------cccc-ccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCC--------CccccCC
Q 006019          535 ---------TSKK-LSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQP--------LQQFVDP  595 (664)
Q Consensus       535 ---------~~pe-~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~--------~~~~~d~  595 (664)
                               ..|. ++.+.-+++..|+||-||++.|+.. |++-|.+  .+..+...++......        +.++-|-
T Consensus       159 saevvtlwyrppdvlfgakly~tsidmwsagcifaelanagrplfpg--~dvddqlkrif~~lg~p~ed~wps~t~lpdy  236 (292)
T KOG0662|consen  159 SAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPG--NDVDDQLKRIFRLLGTPTEDQWPSMTKLPDY  236 (292)
T ss_pred             eceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCC--CcHHHHHHHHHHHhCCCccccCCccccCCCC
Confidence                     2333 2344557889999999999999998 5554532  2223322222211111        1111111


Q ss_pred             CC-CCCC---------HHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          596 TL-SSFD---------EEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       596 ~~-~~~~---------~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .. +.++         +.....-.+++.+.+.-+|.+|.++++.++
T Consensus       237 k~yp~ypattswsqivp~lns~grdllqkll~cnp~qrisaeaalq  282 (292)
T KOG0662|consen  237 KPYPIYPATTSWSQIVPKLNSTGRDLLQKLLKCNPAQRISAEAALQ  282 (292)
T ss_pred             cccCCccccchHHHHhhhhcchhHHHHHHHhccCcccccCHHHHhc
Confidence            11 1111         111223457777888889999999987664

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.96  E-value=1e-29  Score=246.14  Aligned_cols=255  Identities=19%  Similarity=0.332  Sum_probs=189.1

Q ss_pred             CHHHHHHHHhhhhcccccCCCeEEEEEE-ECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcccceEEEE
Q 006019          363 KRSELEAACEDFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFC  440 (664)
Q Consensus       363 ~~~el~~~~~~~~~~iG~G~~G~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~  440 (664)
                      +++|+-+.|.   +.||+|+|+.|--++ +.+|.++|||++.+..     .+......+|++++...+ |+||+.|+.|+
T Consensus        74 ~F~d~YkLt~---e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~-----gHsR~RvfREVe~f~~Cqgh~nilqLiefF  145 (463)
T KOG0607|consen   74 KFEDMYKLTS---ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQP-----GHSRSRVFREVETFYQCQGHKNILQLIEFF  145 (463)
T ss_pred             hHHHHHHhHH---HHhcCccceeeeeeeeeccchhhhhhhhhcCC-----chHHHHHHHHHHHHHHhcCCccHHHHHHHh
Confidence            4566666553   689999999999988 7789999999996542     345678899999999995 99999999999


Q ss_pred             ecCCCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC---ceE
Q 006019          441 EEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY---AAK  517 (664)
Q Consensus       441 ~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~---~~k  517 (664)
                      .++.  ..|||||-|.+|.|..+++  +...++....-++..+||.||.|||.++  |.||||||+|||-.+-.   -+|
T Consensus       146 Edd~--~FYLVfEKm~GGplLshI~--~~~~F~E~EAs~vvkdia~aLdFlH~kg--IAHRDlKPENiLC~~pn~vsPvK  219 (463)
T KOG0607|consen  146 EDDT--RFYLVFEKMRGGPLLSHIQ--KRKHFNEREASRVVKDIASALDFLHTKG--IAHRDLKPENILCESPNKVSPVK  219 (463)
T ss_pred             cccc--eEEEEEecccCchHHHHHH--HhhhccHHHHHHHHHHHHHHHHHHhhcC--cccccCCccceeecCCCCcCcee
Confidence            9888  5699999999999999987  4456888899999999999999999999  99999999999986543   479


Q ss_pred             ecccCchhhhhhh----------------hhhccccccc-----CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChH
Q 006019          518 LSDLSFWNEIAMA----------------EMAATSKKLS-----SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLE  576 (664)
Q Consensus       518 l~DfGla~~~~~~----------------~~~~~~pe~~-----~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~  576 (664)
                      |+||.+.......                ...+++||..     .+..|..++|.||+|||||-|+.|..||.+..+...
T Consensus       220 iCDfDLgSg~k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~dC  299 (463)
T KOG0607|consen  220 ICDFDLGSGIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGADC  299 (463)
T ss_pred             eeccccccccccCCCCCCCCCccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccCCcC
Confidence            9999875433211                1122344432     344578899999999999999999999964333222


Q ss_pred             HHHHHHhcC--CCCCccccCCCCCCCCH----HHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          577 DWAADYLSG--VQPLQQFVDPTLSSFDE----EQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       577 ~~~~~~~~~--~~~~~~~~d~~~~~~~~----~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .|-+.....  ...+.+-+....-++|+    ....+..+++...+..|+.+|.++..+++
T Consensus       300 GWdrGe~Cr~CQ~~LFesIQEGkYeFPdkdWahIS~eakdlisnLlvrda~~rlsa~~vln  360 (463)
T KOG0607|consen  300 GWDRGEVCRVCQNKLFESIQEGKYEFPDKDWAHISSEAKDLISNLLVRDAKQRLSAAQVLN  360 (463)
T ss_pred             CccCCCccHHHHHHHHHHHhccCCcCChhhhHHhhHHHHHHHHHHHhccHHhhhhhhhccC
Confidence            222110000  00011111112223332    34567889999999999999999988876

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.96  E-value=2.1e-29  Score=243.27  Aligned_cols=251  Identities=18%  Similarity=0.217  Sum_probs=181.3

Q ss_pred             hcccccCCCeEEEEEEECC-----CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeE
Q 006019          375 SNVIGSSPIGTVYKGTLSN-----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  449 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~~-----~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~  449 (664)
                      ...||+|.||.||||.-.+     .+.+|+|+++......   .......+|+.+++.++||||+.|..++...+. ..+
T Consensus        29 ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~t---GiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~-~v~  104 (438)
T KOG0666|consen   29 IGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGT---GISMSACREIALLRELKHPNVISLVKVFLSHDK-KVW  104 (438)
T ss_pred             cceecccccceeeEeeeccCCcccchhhHHHHHhccCCCC---CcCHHHHHHHHHHHHhcCCcchhHHHHHhccCc-eEE
Confidence            4679999999999996432     2378999887654322   334567789999999999999999988876432 689


Q ss_pred             EEEEecCCCChhhhhcc---cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCC----CceEecccC
Q 006019          450 MVFEYAPNGTLFEHIHI---KESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED----YAAKLSDLS  522 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~---~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~----~~~kl~DfG  522 (664)
                      +++||.+. +|.+.++-   .....+...+...|..||+.|+.|||+.-  |+||||||.|||+..+    |.+||+|+|
T Consensus       105 l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~NW--vlHRDLKPaNIlvmgdgperG~VKIaDlG  181 (438)
T KOG0666|consen  105 LLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSNW--VLHRDLKPANILVMGDGPERGRVKIADLG  181 (438)
T ss_pred             EEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhhh--eeeccCCcceEEEeccCCccCeeEeeccc
Confidence            99999988 88887752   23467888999999999999999999999  9999999999999977    899999999


Q ss_pred             chhhhhhh------------hhhccccccc-CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCC-------hHHHHHHH
Q 006019          523 FWNEIAMA------------EMAATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGS-------LEDWAADY  582 (664)
Q Consensus       523 la~~~~~~------------~~~~~~pe~~-~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~-------~~~~~~~~  582 (664)
                      ++|.+...            +..+.+||+. .+..+|.+.|||+.||++.||+|-++-|.+....       ..+...++
T Consensus       182 laR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~g~E~k~~~~~Pfq~dQl~rI  261 (438)
T KOG0666|consen  182 LARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLFKGREEKIKTKNPFQHDQLDRI  261 (438)
T ss_pred             HHHHhhccccccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCccccchhhhcccCCCchHHHHHHH
Confidence            99987532            2234567765 4556899999999999999999987666422111       11111122


Q ss_pred             hcCCCCCccccCCCCCCCCHH--------------------------HHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          583 LSGVQPLQQFVDPTLSSFDEE--------------------------QLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       583 ~~~~~~~~~~~d~~~~~~~~~--------------------------~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      +.-.+...+-.-|.+..+|+.                          -....++|+.+.+..||-+|.|+++.++.
T Consensus       262 f~vLG~Pt~~~Wp~lkk~Pe~q~~ls~f~~~~~~n~sL~~~~~~~k~k~~~a~~LL~klL~yDP~kRIta~qAleh  337 (438)
T KOG0666|consen  262 FEVLGTPTDKDWPDLKKMPEYQTLLSDFRRHYYDNVSLHKYYHKHKVKDPSALDLLQKLLTYDPIKRITAEQALEH  337 (438)
T ss_pred             HHHcCCCccccchhhhhCcchHHHHHHhHHhhcCcchHHHHHHHhcCCCchHHHHHHHHhccCchhhccHHHHhcc
Confidence            111111111111122111111                          01236789999999999999999976653

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=3.6e-29  Score=251.24  Aligned_cols=244  Identities=19%  Similarity=0.301  Sum_probs=182.4

Q ss_pred             hhcccccCCCeEEEEEE-ECCCcEEEEEEeeecccCCCc----hhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          374 FSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWP----KNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~-~~~~~~vavk~~~~~~~~~~~----~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      +-++||+|||..||||. +...+.||||+-.+.  ++|.    ....+...+|.++.+.+.||.||+++.|+.-+.. ..
T Consensus       467 lLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlN--K~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtd-sF  543 (775)
T KOG1151|consen  467 LLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLN--KNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTD-SF  543 (775)
T ss_pred             HHHHhccccHHHHHHhcccchhheeeEeeehhc--cchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccc-cc
Confidence            34789999999999998 556788999976543  2332    2344567789999999999999999999975443 45


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecC---CCceEecccCchh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE---DYAAKLSDLSFWN  525 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~---~~~~kl~DfGla~  525 (664)
                      |-|+|||++.+|.-+|.  ....++......|+.+|..||.||.+..|||||-||||.||||..   -|.+||+|||+++
T Consensus       544 CTVLEYceGNDLDFYLK--QhklmSEKEARSIiMQiVnAL~YLNEikpPIIHYDLKPgNILLv~GtacGeIKITDFGLSK  621 (775)
T KOG1151|consen  544 CTVLEYCEGNDLDFYLK--QHKLMSEKEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNILLVNGTACGEIKITDFGLSK  621 (775)
T ss_pred             eeeeeecCCCchhHHHH--hhhhhhHHHHHHHHHHHHHHHHHHhccCCCeeeeccCCccEEEecCcccceeEeeecchhh
Confidence            89999999999988885  445688899999999999999999999999999999999999964   4789999999999


Q ss_pred             hhhhhhh----------------hcccccccC----CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcC
Q 006019          526 EIAMAEM----------------AATSKKLSS----APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG  585 (664)
Q Consensus       526 ~~~~~~~----------------~~~~pe~~~----~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~  585 (664)
                      .+.....                .+..||.+.    .++++.|.||||.||++|..+.|+.||..+ ....    +++..
T Consensus       622 IMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhn-qsQQ----dILqe  696 (775)
T KOG1151|consen  622 IMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHN-QSQQ----DILQE  696 (775)
T ss_pred             hccCCccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCc-hhHH----HHHhh
Confidence            8853221                122355432    456899999999999999999999999422 1111    12221


Q ss_pred             CCCCccccCCCCCCCC--HHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          586 VQPLQQFVDPTLSSFD--EEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       586 ~~~~~~~~d~~~~~~~--~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ..    ++..+-..+|  +....+..+++++|++..-++|-...++..
T Consensus       697 NT----IlkAtEVqFP~KPvVsseAkaFIRRCLaYRKeDR~DV~qLA~  740 (775)
T KOG1151|consen  697 NT----ILKATEVQFPPKPVVSSEAKAFIRRCLAYRKEDRIDVQQLAC  740 (775)
T ss_pred             hc----hhcceeccCCCCCccCHHHHHHHHHHHHhhhhhhhhHHHHcc
Confidence            11    1111111111  223456889999999999999887766654

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.96  E-value=3.8e-29  Score=240.55  Aligned_cols=238  Identities=18%  Similarity=0.303  Sum_probs=183.8

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecC--CCceeEEE
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEE--EPFTRMMV  451 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~--~~~~~~lV  451 (664)
                      ++||-|-.|.|-.+..+ ++..+|+|++..          ....++|+++.-.. .|||||.++.++...  +....++|
T Consensus        68 qvLG~GinGkV~~C~~k~T~ekfALKvL~D----------s~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkcLLiV  137 (400)
T KOG0604|consen   68 QVLGAGINGKVVQCVHKRTQEKFALKVLLD----------SPKARREVELHWMASGHPHIVSIIDVYENSYQGRKCLLIV  137 (400)
T ss_pred             hhhccccCCceEEEEeccchhhhHHHHHhc----------CHHHHhHhhhhhhhcCCCceEEeehhhhhhccCceeeEee
Confidence            68999999999999865 588899988742          13456888876555 699999999998643  22256889


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecC---CCceEecccCchhhhh
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE---DYAAKLSDLSFWNEIA  528 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~---~~~~kl~DfGla~~~~  528 (664)
                      ||+|++|.|+..+..+....++..+..+|+.+|+.|+.|||+.+  |.||||||+|+|...   |-..|++|||+|+...
T Consensus       138 mE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~~n--IAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~  215 (400)
T KOG0604|consen  138 MECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHSMN--IAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQ  215 (400)
T ss_pred             eecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhcc--hhhccCChhheeeecCCCCcceEecccccccccC
Confidence            99999999999998888888999999999999999999999999  999999999999974   4578999999999764


Q ss_pred             hh--------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCC--hHHHHHHHhcCCCCCccccCCCCC
Q 006019          529 MA--------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGS--LEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       529 ~~--------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                      ..        +.++.+||.....++...+|+||+||++|-|+.|..||....+.  .....+++..+..   .+-++.. 
T Consensus       216 ~~~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~aispgMk~rI~~gqy---~FP~pEW-  291 (400)
T KOG0604|consen  216 EPGDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKRRIRTGQY---EFPEPEW-  291 (400)
T ss_pred             CCccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCCccCChhHHhHhhccCc---cCCChhH-
Confidence            21        23455778777778899999999999999999999999532221  0111111111111   1111111 


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                         ...++...++++..+..+|.+|.|+.++++.
T Consensus       292 ---s~VSe~aKdlIR~LLkt~PteRlTI~~~m~h  322 (400)
T KOG0604|consen  292 ---SCVSEAAKDLIRKLLKTEPTERLTIEEVMDH  322 (400)
T ss_pred             ---hHHHHHHHHHHHHHhcCCchhheeHHHhhcC
Confidence               2345678899999999999999999988763

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.96  E-value=2.2e-29  Score=254.25  Aligned_cols=235  Identities=21%  Similarity=0.265  Sum_probs=189.2

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      ++||+|+||.||-++.+ +|+.+|.|++.++..+.  ...+..-+.|-.+|.+++.+.||.+--.+...+  ..++|+..
T Consensus       191 RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKk--r~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd--~LClVLtl  266 (591)
T KOG0986|consen  191 RVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKK--RKGETMALNEKQILEKVSSPFIVSLAYAFETKD--ALCLVLTL  266 (591)
T ss_pred             EEEecccccceeEEEEecchhhHHHHHHHHHHHHH--hhhhHHhhHHHHHHHHhccCcEEEEeeeecCCC--ceEEEEEe
Confidence            78999999999999854 68899999887655443  334556789999999999999999866666666  78999999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh-----
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM-----  529 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~-----  529 (664)
                      |.+|+|.-++..-....++....+-+|.+|+.||++||...  ||.|||||+|||||++|+++|+|.|+|..+..     
T Consensus       267 MNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~~--iVYRDLKPeNILLDd~GhvRISDLGLAvei~~g~~~~  344 (591)
T KOG0986|consen  267 MNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRRR--IVYRDLKPENILLDDHGHVRISDLGLAVEIPEGKPIR  344 (591)
T ss_pred             ecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhcc--eeeccCChhheeeccCCCeEeeccceEEecCCCCccc
Confidence            99999998887555568999999999999999999999998  99999999999999999999999999987642     


Q ss_pred             ---hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCC--hHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          530 ---AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGS--LEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       530 ---~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                         ++..+++||......|+...|.||+||++|||+.|+.||......  -++.-+..+.+           -..+++..
T Consensus       345 ~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeKvk~eEvdrr~~~~-----------~~ey~~kF  413 (591)
T KOG0986|consen  345 GRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEKVKREEVDRRTLED-----------PEEYSDKF  413 (591)
T ss_pred             cccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhhhhhhHHHHHHHHhcc-----------hhhccccc
Confidence               344567899998888999999999999999999999999421111  11111111111           11344556


Q ss_pred             HHHHHHHHHHhccCCCCCCCCHH
Q 006019          605 LETLGELIKSCVRADPEKRPTMR  627 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RPs~~  627 (664)
                      .+++.++....+++||++|...+
T Consensus       414 S~eakslc~~LL~Kdp~~RLGcr  436 (591)
T KOG0986|consen  414 SEEAKSLCEGLLTKDPEKRLGCR  436 (591)
T ss_pred             CHHHHHHHHHHHccCHHHhccCC
Confidence            67789999999999999997544

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.95  E-value=7.1e-28  Score=262.27  Aligned_cols=245  Identities=15%  Similarity=0.217  Sum_probs=166.7

Q ss_pred             hcccccCCCeEEEEEEE-----------------CCCcEEEEEEeeecccCCCc---------hhHHHHHHHHHHHHhcc
Q 006019          375 SNVIGSSPIGTVYKGTL-----------------SNGVEIAVASVSVASAKDWP---------KNLEVQFRKKIDTLSKV  428 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~-----------------~~~~~vavk~~~~~~~~~~~---------~~~~~~f~~E~~~l~~l  428 (664)
                      .++||+|+||.||+|.+                 .+++.||||++.........         ....+.+..|+.++.++
T Consensus       150 ~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE~~~l~~l  229 (507)
T PLN03224        150 RDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVEAYMCAKI  229 (507)
T ss_pred             eeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHHHHHHHHh
Confidence            48999999999999974                 23567999998643221100         00122345577788888


Q ss_pred             CCCcc-----cceEEEEecCC------CceeEEEEEecCCCChhhhhcccC----------------------CCCCCHH
Q 006019          429 NHKNF-----VNLIGFCEEEE------PFTRMMVFEYAPNGTLFEHIHIKE----------------------SEHLDWG  475 (664)
Q Consensus       429 ~H~ni-----v~l~g~~~~~~------~~~~~lV~Ey~~~GsL~~~l~~~~----------------------~~~l~~~  475 (664)
                      +|.++     ++++|||....      ....+|||||+++|+|.++++...                      ...++|.
T Consensus       230 ~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~~~~~~~  309 (507)
T PLN03224        230 KRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQDKRDIN  309 (507)
T ss_pred             hcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcccccCCHH
Confidence            77655     77888886421      125799999999999999887421                      1235788


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh----------hhhcccccccCCCC-
Q 006019          476 MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA----------EMAATSKKLSSAPS-  544 (664)
Q Consensus       476 ~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~----------~~~~~~pe~~~~~~-  544 (664)
                      .+..|+.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....          ...+.+||...... 
T Consensus       310 ~~~~i~~ql~~aL~~lH~~~--ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aPE~l~~~~~  387 (507)
T PLN03224        310 VIKGVMRQVLTGLRKLHRIG--IVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPPEELVMPQS  387 (507)
T ss_pred             HHHHHHHHHHHHHHHHHHCC--eecCCCchHhEEECCCCcEEEEeCcCccccccCCccCccccCCCcceeChhhhcCCCC
Confidence            89999999999999999988  999999999999999999999999998654221          12345566443211 


Q ss_pred             ---------------------CCcCCcchhhHHHHHHHHhCCC-CccCCC----------CChHHHHHHHhcCCCCCccc
Q 006019          545 ---------------------ASLESNVYNFGVLLFEMVTGRL-PYLVDN----------GSLEDWAADYLSGVQPLQQF  592 (664)
Q Consensus       545 ---------------------~s~ksDVySfGvvl~El~tG~~-P~~~~~----------~~~~~~~~~~~~~~~~~~~~  592 (664)
                                           ...+.||||+||+++||++|.. |+....          ..+..|.. + ...      
T Consensus       388 ~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f~~~~~~~~~~~~~~r~-~-~~~------  459 (507)
T PLN03224        388 CPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLFNTELRQYDNDLNRWRM-Y-KGQ------  459 (507)
T ss_pred             CCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhhhhHHhhccchHHHHHh-h-ccc------
Confidence                                 1235799999999999999875 663110          11111111 0 000      


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhccCCC---CCCCCHHHHHH
Q 006019          593 VDPTLSSFDEEQLETLGELIKSCVRADP---EKRPTMRDIAA  631 (664)
Q Consensus       593 ~d~~~~~~~~~~~~~l~~l~~~Cl~~~P---~~RPs~~ev~~  631 (664)
                       ...+. ..........+++.+++..+|   .+|+|++|+++
T Consensus       460 -~~~~~-~~d~~s~~~~dLi~~LL~~~~~~~~~RlSa~eaL~  499 (507)
T PLN03224        460 -KYDFS-LLDRNKEAGWDLACKLITKRDQANRGRLSVGQALS  499 (507)
T ss_pred             -CCCcc-cccccChHHHHHHHHHhccCCCCcccCCCHHHHhC
Confidence             00011 112234568899999999766   68999999875

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.95  E-value=1.6e-28  Score=251.24  Aligned_cols=235  Identities=23%  Similarity=0.326  Sum_probs=185.0

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      +.||+|.||+||-|+.+ +|+.||||++.+...   +...+.+.++|+.+|.+++||.||.|.-.|...+  ..++|||-
T Consensus       570 evLGSGQFG~VYgg~hRktGrdVAvKvIdKlrF---p~kqesqlR~EVaILq~l~HPGiV~le~M~ET~e--rvFVVMEK  644 (888)
T KOG4236|consen  570 EVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRF---PTKQESQLRNEVAILQNLHHPGIVNLECMFETPE--RVFVVMEK  644 (888)
T ss_pred             hhccCCcceeeecceecccCceeeeeeeecccC---CCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCc--eEEEEehh
Confidence            78999999999999964 799999999976543   3445678999999999999999999999998877  77999999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCC---CceEecccCchhhhhhh-
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED---YAAKLSDLSFWNEIAMA-  530 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~---~~~kl~DfGla~~~~~~-  530 (664)
                      + +|+..+.+-..+...|+...-..+..||+.||.|||.++  |+|+||||+||||.+.   -.+||+|||+||.++.. 
T Consensus       645 l-~GDMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~kn--IvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEks  721 (888)
T KOG4236|consen  645 L-HGDMLEMILSSEKGRLPERITKFLVTQILVALRYLHFKN--IVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKS  721 (888)
T ss_pred             h-cchHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhcc--eeeccCCchheeeccCCCCCceeeccccceeecchhh
Confidence            9 457666666667788999888889999999999999999  9999999999999854   37899999999988532 


Q ss_pred             -------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          531 -------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       531 -------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                             +.++.+||......+...-|+||.||++|--++|..||. ++.++.+.++    ...   -+..+.-   =.+
T Consensus       722 FRrsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFN-EdEdIndQIQ----NAa---FMyPp~P---W~e  790 (888)
T KOG4236|consen  722 FRRSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFN-EDEDINDQIQ----NAA---FMYPPNP---WSE  790 (888)
T ss_pred             hhhhhcCCccccCHHHHhhccccccccceeeeEEEEEEecccccCC-CccchhHHhh----ccc---cccCCCc---hhh
Confidence                   345667888888888999999999999999999999994 3333333221    111   1111110   012


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDI  629 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev  629 (664)
                      ...+..+++...++..=++|-+....
T Consensus       791 is~~AidlIn~LLqVkm~kRysvdk~  816 (888)
T KOG4236|consen  791 ISPEAIDLINNLLQVKMRKRYSVDKS  816 (888)
T ss_pred             cCHHHHHHHHHHHHHHHHHhcchHhh
Confidence            33457788888888888888877644

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=2e-28  Score=237.46  Aligned_cols=230  Identities=20%  Similarity=0.236  Sum_probs=178.8

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      |-++||+|.||+|-.++-+ .++.+|+|++++...-.  +.....-..|-++|+..+||.+..|--.+...+  ..|.||
T Consensus       172 fLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviia--kdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~d--rlCFVM  247 (516)
T KOG0690|consen  172 FLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIA--KDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQD--RLCFVM  247 (516)
T ss_pred             HHHHhcCCccceEEEEeecccCceeehhhhhhhheee--hHHhhhhhhHHHHHHhccCcHHHHhhhhhccCc--eEEEEE
Confidence            4489999999999999854 68999999987654332  233445678999999999999998876666666  789999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||..+|.|+-+|.  ....++.....-.-..|..||.|||+.+  ||.||||-+|.|||.||.+||+|||+++.--.   
T Consensus       248 eyanGGeLf~HLs--rer~FsE~RtRFYGaEIvsAL~YLHs~~--ivYRDlKLENLlLDkDGHIKitDFGLCKE~I~~g~  323 (516)
T KOG0690|consen  248 EYANGGELFFHLS--RERVFSEDRTRFYGAEIVSALGYLHSRN--IVYRDLKLENLLLDKDGHIKITDFGLCKEEIKYGD  323 (516)
T ss_pred             EEccCceEeeehh--hhhcccchhhhhhhHHHHHHhhhhhhCC--eeeeechhhhheeccCCceEeeecccchhcccccc
Confidence            9999999988775  3556777777778889999999999998  99999999999999999999999999886521   


Q ss_pred             ------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          530 ------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       530 ------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                            +...+.+||......+....|.|..|||+|||+.|+.||...  +......-++.+.           ..+|..
T Consensus       324 t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~--dh~kLFeLIl~ed-----------~kFPr~  390 (516)
T KOG0690|consen  324 TTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNK--DHEKLFELILMED-----------LKFPRT  390 (516)
T ss_pred             eeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCccccc--chhHHHHHHHhhh-----------ccCCcc
Confidence                  122334566667777899999999999999999999999522  2222222222221           123333


Q ss_pred             HHHHHHHHHHHhccCCCCCCC
Q 006019          604 QLETLGELIKSCVRADPEKRP  624 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RP  624 (664)
                      ...+...|+.-.+.+||.+|.
T Consensus       391 ls~eAktLLsGLL~kdP~kRL  411 (516)
T KOG0690|consen  391 LSPEAKTLLSGLLKKDPKKRL  411 (516)
T ss_pred             CCHHHHHHHHHHhhcChHhhc
Confidence            445678899999999999995

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=6.4e-28  Score=267.27  Aligned_cols=237  Identities=20%  Similarity=0.269  Sum_probs=183.7

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .++||+|+||.|...+++ .++.+|.|++.+-..-.  .....-|..|-++|..-..+-||.|+-.+.+.+  +.|+|||
T Consensus        80 lKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlK--r~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~~--~LYlVMd  155 (1317)
T KOG0612|consen   80 LKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLK--RAETACFREERDIMVFGNSEWIVQLHYAFQDER--YLYLVMD  155 (1317)
T ss_pred             HHHhcccccceeEEEEeeccccchhHHHhhHHHHhh--chhHHHHHHHhHHHHcCCcHHHHHHHHHhcCcc--ceEEEEe
Confidence            389999999999999975 58889999987533221  122356999999999999999999987787776  7899999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh-----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA-----  528 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~-----  528 (664)
                      ||+||+|..++..  ...++......++..|.-||.-||+.+  +|||||||.|||||.+|.+|++|||.+-.+.     
T Consensus       156 Y~pGGDlltLlSk--~~~~pE~~ArFY~aEiVlAldslH~mg--yVHRDiKPDNvLld~~GHikLADFGsClkm~~dG~V  231 (1317)
T KOG0612|consen  156 YMPGGDLLTLLSK--FDRLPEDWARFYTAEIVLALDSLHSMG--YVHRDIKPDNVLLDKSGHIKLADFGSCLKMDADGTV  231 (1317)
T ss_pred             cccCchHHHHHhh--cCCChHHHHHHHHHHHHHHHHHHHhcc--ceeccCCcceeEecccCcEeeccchhHHhcCCCCcE
Confidence            9999999999852  237888888889999999999999999  9999999999999999999999999876553     


Q ss_pred             -----hhhhhccccccc----CC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 006019          529 -----MAEMAATSKKLS----SA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       529 -----~~~~~~~~pe~~----~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                           .++..|.+||..    .+ +.|...+|.||+||++|||+.|..||.  ...+++....++...+.+         
T Consensus       232 ~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFY--adslveTY~KIm~hk~~l---------  300 (1317)
T KOG0612|consen  232 RSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFY--ADSLVETYGKIMNHKESL---------  300 (1317)
T ss_pred             EeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcch--HHHHHHHHHHHhchhhhc---------
Confidence                 122344456543    23 678999999999999999999999994  344555555555442222         


Q ss_pred             CCC--HHHHHHHHHHHHHhccCCCCCCCC---HHHHHH
Q 006019          599 SFD--EEQLETLGELIKSCVRADPEKRPT---MRDIAA  631 (664)
Q Consensus       599 ~~~--~~~~~~l~~l~~~Cl~~~P~~RPs---~~ev~~  631 (664)
                      .+|  .+.++++.+||.+-+ -+|+.|..   ..|+..
T Consensus       301 ~FP~~~~VSeeakdLI~~ll-~~~e~RLgrngiedik~  337 (1317)
T KOG0612|consen  301 SFPDETDVSEEAKDLIEALL-CDREVRLGRNGIEDIKN  337 (1317)
T ss_pred             CCCcccccCHHHHHHHHHHh-cChhhhcccccHHHHHh
Confidence            122  224567888888766 45778877   666654

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.95  E-value=1.7e-27  Score=265.88  Aligned_cols=243  Identities=16%  Similarity=0.214  Sum_probs=151.0

Q ss_pred             hhcccccCCCeEEEEEEEC-C----CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEE------Eec
Q 006019          374 FSNVIGSSPIGTVYKGTLS-N----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGF------CEE  442 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~----~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~------~~~  442 (664)
                      +.+.||+|+||.||+|++. +    +..||+|++.....       .+.+..|  .+....+.+++.+...      +..
T Consensus       136 l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~-------~e~~~~e--~l~~~~~~~~~~~~~~~~~~~~~~~  206 (566)
T PLN03225        136 LGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGA-------VEIWMNE--RVRRACPNSCADFVYGFLEPVSSKK  206 (566)
T ss_pred             EeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccch-------hHHHHHH--HHHhhchhhHHHHHHhhhccccccc
Confidence            3489999999999999975 4    68899998753211       1111111  1222223333322211      122


Q ss_pred             CCCceeEEEEEecCCCChhhhhcccCCC------------------CCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcC
Q 006019          443 EEPFTRMMVFEYAPNGTLFEHIHIKESE------------------HLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLN  504 (664)
Q Consensus       443 ~~~~~~~lV~Ey~~~GsL~~~l~~~~~~------------------~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk  504 (664)
                      ..  ..++||||+++|+|.++++.....                  .........|+.|++.||+|||+.+  |+|||||
T Consensus       207 ~~--~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~g--IiHRDLK  282 (566)
T PLN03225        207 ED--EYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHSTG--IVHRDVK  282 (566)
T ss_pred             CC--ceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHCC--EEeCcCC
Confidence            22  679999999999999988643210                  0112334579999999999999988  9999999


Q ss_pred             CCCeEecC-CCceEecccCchhhhhhh----------hhhcccccccCC----------------------CCCCcCCcc
Q 006019          505 SSAVHLTE-DYAAKLSDLSFWNEIAMA----------EMAATSKKLSSA----------------------PSASLESNV  551 (664)
Q Consensus       505 ~~NILld~-~~~~kl~DfGla~~~~~~----------~~~~~~pe~~~~----------------------~~~s~ksDV  551 (664)
                      |+|||+++ ++.+||+|||+++.....          ...+.+||....                      ..++.++||
T Consensus       283 P~NILl~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~DV  362 (566)
T PLN03225        283 PQNIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDI  362 (566)
T ss_pred             HHHEEEeCCCCcEEEEeCCCccccccccccCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCccc
Confidence            99999996 589999999999754211          123455653211                      123457799


Q ss_pred             hhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCC---ccccCCCCC-------CCCHHHHHHHHHHHHHhccCCCC
Q 006019          552 YNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL---QQFVDPTLS-------SFDEEQLETLGELIKSCVRADPE  621 (664)
Q Consensus       552 ySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~---~~~~d~~~~-------~~~~~~~~~l~~l~~~Cl~~~P~  621 (664)
                      |||||++|||+++..|++.   .+..+...........   .....+...       ...........+|+.+|++.||+
T Consensus       363 wSlGviL~el~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~dLi~~mL~~dP~  439 (566)
T PLN03225        363 YSAGLIFLQMAFPNLRSDS---NLIQFNRQLKRNDYDLVAWRKLVEPRASPDLRRGFEVLDLDGGAGWELLKSMMRFKGR  439 (566)
T ss_pred             HHHHHHHHHHHhCcCCCch---HHHHHHHHHHhcCCcHHHHHHhhccccchhhhhhhhhccccchHHHHHHHHHccCCcc
Confidence            9999999999998776521   1222211111100000   000111100       00001122456899999999999


Q ss_pred             CCCCHHHHHHH
Q 006019          622 KRPTMRDIAAI  632 (664)
Q Consensus       622 ~RPs~~ev~~~  632 (664)
                      +|||++++++.
T Consensus       440 kR~ta~e~L~H  450 (566)
T PLN03225        440 QRISAKAALAH  450 (566)
T ss_pred             cCCCHHHHhCC
Confidence            99999999874

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.94  E-value=9.8e-27  Score=252.46  Aligned_cols=240  Identities=18%  Similarity=0.286  Sum_probs=190.5

Q ss_pred             hhcccccCCCeEEEEEE-ECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCC---Ccee
Q 006019          374 FSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEE---PFTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~---~~~~  448 (664)
                      |.+.||.|.+|.|||++ .++++..|+|++......+      ++...|.++++.. .|||++.++|++...+   +.+.
T Consensus        23 i~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~d------eEiE~eynil~~~~~hpnv~~fyg~~~k~~~~~~DqL   96 (953)
T KOG0587|consen   23 IIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDEE------EEIELEYNMLKKYSHHPNVATFYGAFIKKDPGNGDQL   96 (953)
T ss_pred             EEEEEeeccceeEEEEeeeecCceeeeEeecCCcccc------HHHHHHHHHHHhccCCCCcceEEEEEEEecCCCCCeE
Confidence            45889999999999999 5678899999987655433      6778889998887 6999999999986432   2378


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      +||||||.+||..|++..-.+..+.|.....|++++++|+.+||...  ++|||+|-.|||++.++.+|+.|||.+..+.
T Consensus        97 WLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~nk--viHRDikG~NiLLT~e~~VKLvDFGvSaQld  174 (953)
T KOG0587|consen   97 WLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNNK--VIHRDIKGQNVLLTENAEVKLVDFGVSAQLD  174 (953)
T ss_pred             EEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhcc--eeeecccCceEEEeccCcEEEeeeeeeeeee
Confidence            99999999999999998767888999999999999999999999988  9999999999999999999999999987764


Q ss_pred             h---------hhhhcccccccC-----CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccC
Q 006019          529 M---------AEMAATSKKLSS-----APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD  594 (664)
Q Consensus       529 ~---------~~~~~~~pe~~~-----~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d  594 (664)
                      .         +...+++||...     ...++.++|+||+|++..||--|..|+.  +.+....   ...-    ..--.
T Consensus       175 sT~grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~--DmHPmra---LF~I----pRNPP  245 (953)
T KOG0587|consen  175 STVGRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLC--DMHPMRA---LFLI----PRNPP  245 (953)
T ss_pred             cccccccCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCcc--Ccchhhh---hccC----CCCCC
Confidence            2         234556666543     3446788999999999999999999982  2222111   1100    00001


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          595 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       595 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      |. ...+.....++-+++..|+.+|-++||++.++++
T Consensus       246 Pk-Lkrp~kWs~~FndFIs~cL~Kd~e~RP~~~~ll~  281 (953)
T KOG0587|consen  246 PK-LKRPKKWSKKFNDFISTCLVKDYEQRPSTEELLK  281 (953)
T ss_pred             cc-ccchhhHHHHHHHHHHHHHhhccccCcchhhhcc
Confidence            11 1235667788999999999999999999988764

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=2.8e-28  Score=229.09  Aligned_cols=247  Identities=19%  Similarity=0.297  Sum_probs=178.5

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCC------Ccee
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE------PFTR  448 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~------~~~~  448 (664)
                      .+||+|.||.||+|+.+ .|+.||+|++.....+..   ....-.+|+++|..++|+|++.++..|....      ....
T Consensus        23 ~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeG---fpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r~t~   99 (376)
T KOG0669|consen   23 AKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEG---FPITALREIKILQLLKHENVVNLIEICRTKATPTNRDRATF   99 (376)
T ss_pred             HhcCCchHHHHHHHhhcCccchhHHHHHHHhccccC---CcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCccccccee
Confidence            57999999999999965 577889888765443332   2245678999999999999999998885422      1246


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++|+++|+. +|...|. +....++.....+++.++..||.|+|...  |+|||+|+.|+|++.++..||+|||+++.+.
T Consensus       100 ylVf~~ceh-DLaGlLs-n~~vr~sls~Ikk~Mk~Lm~GL~~iHr~k--ilHRDmKaaNvLIt~dgilklADFGlar~fs  175 (376)
T KOG0669|consen  100 YLVFDFCEH-DLAGLLS-NRKVRFSLSEIKKVMKGLMNGLYYIHRNK--ILHRDMKAANVLITKDGILKLADFGLARAFS  175 (376)
T ss_pred             eeeHHHhhh-hHHHHhc-CccccccHHHHHHHHHHHHHHHHHHHHhh--HHhhcccHhhEEEcCCceEEeecccccccee
Confidence            999999987 8888885 33467888999999999999999999998  9999999999999999999999999998663


Q ss_pred             hh-------------hhhccccccc-CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHH-HHhcCCCCCcccc
Q 006019          529 MA-------------EMAATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAA-DYLSGVQPLQQFV  593 (664)
Q Consensus       529 ~~-------------~~~~~~pe~~-~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~-~~~~~~~~~~~~~  593 (664)
                      ..             ...+..||.. ...+++++.|||.-|||+.||+||.+-+. .+.+..+... ..+.+  .+..-+
T Consensus       176 ~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimq-gnteqqql~~Is~LcG--s~tkev  252 (376)
T KOG0669|consen  176 TSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQ-GNTEQQQLHLISQLCG--SITKEV  252 (376)
T ss_pred             cccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCcccc-CChHHHHHHHHHHHhc--cCCccc
Confidence            22             1222344543 34568899999999999999999876653 2222222210 11111  111111


Q ss_pred             CCCCC-----------CCC-------HHH------HHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          594 DPTLS-----------SFD-------EEQ------LETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       594 d~~~~-----------~~~-------~~~------~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      .|...           +.+       ++.      ..+..+++.+.+..||.+|+++.+++..
T Consensus       253 WP~~d~lpL~~sie~ePl~~~~~rkv~n~~kp~~kd~~a~dLle~ll~~DP~kR~~ad~alnh  315 (376)
T KOG0669|consen  253 WPNVDNLPLYQSIELEPLPKGQKRKVKNRLKPYVKDDEALDLLEKLLKLDPTKRIDADQALNH  315 (376)
T ss_pred             CCCcccchHHHhccCCCCCcchhhhhhhhcccccCChhHHHHHHHHhccCcccCcchHhhhch
Confidence            11110           000       111      1367899999999999999999988764

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=5.3e-27  Score=234.02  Aligned_cols=232  Identities=18%  Similarity=0.200  Sum_probs=180.5

Q ss_pred             hhhhcccccCCCeEEEEEEECC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeE
Q 006019          372 EDFSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRM  449 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~  449 (664)
                      .+|..+||+|+||.|..|..++ ...+|||+++....-.  ....+--+.|-++|.-- +-|.++.++.++...+  ..|
T Consensus       351 FnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQ--dDDvectm~EKrvLAL~~kppFL~qlHScFQTmD--RLy  426 (683)
T KOG0696|consen  351 FNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQ--DDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMD--RLY  426 (683)
T ss_pred             cceEEEeccCccceeeeecccCcchhhhhhhhccceeee--cCcccceehhhhheecCCCCchHHHHHHHhhhhh--hee
Confidence            3567899999999999998654 5678999987544321  11112234566666655 5788999999998877  679


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                      .||||+.+|+|--+++  .-..+..+...-+|..||-||-|||+++  |+.||||-.|||||.+|.+||+|||+++.--.
T Consensus       427 FVMEyvnGGDLMyhiQ--Q~GkFKEp~AvFYAaEiaigLFFLh~kg--IiYRDLKLDNvmLd~eGHiKi~DFGmcKEni~  502 (683)
T KOG0696|consen  427 FVMEYVNGGDLMYHIQ--QVGKFKEPVAVFYAAEIAIGLFFLHSKG--IIYRDLKLDNVMLDSEGHIKIADFGMCKENIF  502 (683)
T ss_pred             eEEEEecCchhhhHHH--HhcccCCchhhhhhHHHHHHhhhhhcCC--eeeeeccccceEeccCCceEeeeccccccccc
Confidence            9999999999977775  3455777788889999999999999999  99999999999999999999999999886532


Q ss_pred             h---------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 006019          530 A---------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  600 (664)
Q Consensus       530 ~---------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  600 (664)
                      .         +..+.+||......|+...|.|||||+||||+.|+.||+++  +..+..+.++...           ..+
T Consensus       503 ~~~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGe--DE~elF~aI~ehn-----------vsy  569 (683)
T KOG0696|consen  503 DGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGE--DEDELFQAIMEHN-----------VSY  569 (683)
T ss_pred             CCcceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCC--CHHHHHHHHHHcc-----------CcC
Confidence            1         23455788888888999999999999999999999999543  3444454444321           134


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCC
Q 006019          601 DEEQLETLGELIKSCVRADPEKRP  624 (664)
Q Consensus       601 ~~~~~~~l~~l~~~Cl~~~P~~RP  624 (664)
                      |...+.+..++...-+.+.|.+|.
T Consensus       570 PKslSkEAv~ickg~ltK~P~kRL  593 (683)
T KOG0696|consen  570 PKSLSKEAVAICKGLLTKHPGKRL  593 (683)
T ss_pred             cccccHHHHHHHHHHhhcCCcccc
Confidence            555556788888888999999984

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.94  E-value=1.8e-26  Score=211.24  Aligned_cols=186  Identities=18%  Similarity=0.244  Sum_probs=149.8

Q ss_pred             cccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhc-cCCCcccceEEEEecCCCceeEEEEE
Q 006019          376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSK-VNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~-l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      ..||+|+||.|-|-++ .+|...|||++.....    .+..++...|+++..+ ...|.+|.++|.+....  ..++.||
T Consensus        52 ~elGrGayG~vekmrh~~sg~imAvKri~~tvn----~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~reg--dvwIcME  125 (282)
T KOG0984|consen   52 EELGRGAYGVVEKMRHIQSGTIMAVKRIRATVN----SQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREG--DVWICME  125 (282)
T ss_pred             hhhcCCccchhhheeeccCCeEEEEeeehhhcC----hHHHHHHHHhhhhhccCCCCCeEEEeehhhhccc--cEEEeHH
Confidence            4699999999999885 4799999999975442    3455677888887554 57999999999887766  6799999


Q ss_pred             ecCCCChhhhhcc--cCCCCCCHHHHHHHHHHHHHHHHHhhcC-CCCeEEeCcCCCCeEecCCCceEecccCchhhhhh-
Q 006019          454 YAPNGTLFEHIHI--KESEHLDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM-  529 (664)
Q Consensus       454 y~~~GsL~~~l~~--~~~~~l~~~~~~~ia~~ia~gL~yLH~~-~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~-  529 (664)
                      .|.- ||..+-+.  +.+..+.....-+||..|.+||.|||++ +  ++|||+||+|||++.+|.+|++|||++..+.. 
T Consensus       126 ~M~t-Sldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL~--vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~dS  202 (282)
T KOG0984|consen  126 LMDT-SLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKLS--VIHRDVKPSNILINYDGQVKICDFGISGYLVDS  202 (282)
T ss_pred             Hhhh-hHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHhh--hhhccCCcceEEEccCCcEEEcccccceeehhh
Confidence            9965 77665432  2456788888899999999999999975 5  99999999999999999999999998765532 


Q ss_pred             -------hhhhcccccccC----CCCCCcCCcchhhHHHHHHHHhCCCCccC
Q 006019          530 -------AEMAATSKKLSS----APSASLESNVYNFGVLLFEMVTGRLPYLV  570 (664)
Q Consensus       530 -------~~~~~~~pe~~~----~~~~s~ksDVySfGvvl~El~tG~~P~~~  570 (664)
                             +-..+++||...    ...|+-||||||+|+.+.||.+++.||+.
T Consensus       203 iAkt~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~  254 (282)
T KOG0984|consen  203 IAKTMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYES  254 (282)
T ss_pred             hHHHHhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhccccccc
Confidence                   223455666432    23688999999999999999999999953

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.94  E-value=1.7e-25  Score=218.07  Aligned_cols=202  Identities=28%  Similarity=0.444  Sum_probs=170.8

Q ss_pred             cccCCCeEEEEEEECC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEecC
Q 006019          378 IGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAP  456 (664)
Q Consensus       378 iG~G~~G~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey~~  456 (664)
                      ||+|.+|.||++...+ +..+++|++.......    ..+.+.+|++.+++++|++++++++++....  ..++++||++
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~----~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~--~~~~~~e~~~   74 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSS----LLEELLREIEILKKLNHPNIVKLYGVFEDEN--HLYLVMEYCE   74 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchh----HHHHHHHHHHHHHhcCCCCeeeEeeeeecCC--eEEEEEecCC
Confidence            6899999999999764 8899999986543221    3467999999999999999999999998765  6799999999


Q ss_pred             CCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecC-CCceEecccCchhhhhhh-----
Q 006019          457 NGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE-DYAAKLSDLSFWNEIAMA-----  530 (664)
Q Consensus       457 ~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~-~~~~kl~DfGla~~~~~~-----  530 (664)
                      +++|.+++.... ..+++..+..++.+++++++|||+.+  ++|+||+|.||+++. +..++|+|||.+......     
T Consensus        75 ~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lh~~~--~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~~~~  151 (215)
T cd00180          75 GGSLKDLLKENE-GKLSEDEILRILLQILEGLEYLHSNG--IIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLK  151 (215)
T ss_pred             CCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhCC--eeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcchhh
Confidence            999999986332 46899999999999999999999998  999999999999999 899999999988755432     


Q ss_pred             ----hhhcccccccCCC-CCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 006019          531 ----EMAATSKKLSSAP-SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  605 (664)
Q Consensus       531 ----~~~~~~pe~~~~~-~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  605 (664)
                          ...+.+||..... ..+.++|+|++|++++||                                            
T Consensus       152 ~~~~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l--------------------------------------------  187 (215)
T cd00180         152 TIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL--------------------------------------------  187 (215)
T ss_pred             cccCCCCccChhHhcccCCCCchhhhHHHHHHHHHH--------------------------------------------
Confidence                1223345555554 678899999999999999                                            


Q ss_pred             HHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          606 ETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       606 ~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      ..+.+++.+|++.+|++||++.++++.
T Consensus       188 ~~~~~~l~~~l~~~p~~R~~~~~l~~~  214 (215)
T cd00180         188 PELKDLIRKMLQKDPEKRPSAKEILEH  214 (215)
T ss_pred             HHHHHHHHHHhhCCcccCcCHHHHhhC
Confidence            357899999999999999999998864

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.93  E-value=9.4e-27  Score=251.44  Aligned_cols=230  Identities=20%  Similarity=0.328  Sum_probs=168.2

Q ss_pred             cccccCCCe-EEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeEEEEE
Q 006019          376 NVIGSSPIG-TVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       376 ~~iG~G~~G-~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +++|.|+.| .||+|.+ +|+.||||++...        ...-..+|++.|+.- +|||||++++.-.+..  ..||..|
T Consensus       515 eilG~Gs~Gt~Vf~G~y-e~R~VAVKrll~e--------~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~q--F~YIalE  583 (903)
T KOG1027|consen  515 EILGYGSNGTVVFRGVY-EGREVAVKRLLEE--------FFDFAQREIQLLQESDEHPNVIRYYCSEQDRQ--FLYIALE  583 (903)
T ss_pred             HHcccCCCCcEEEEEee-CCceehHHHHhhH--------hHHHHHHHHHHHHhccCCCceEEEEeeccCCc--eEEEEeh
Confidence            678999886 5899999 5789999988532        223456899999887 5999999965554444  8899999


Q ss_pred             ecCCCChhhhhccc--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecC---C--CceEecccCchhh
Q 006019          454 YAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE---D--YAAKLSDLSFWNE  526 (664)
Q Consensus       454 y~~~GsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~---~--~~~kl~DfGla~~  526 (664)
                      .|.- +|.+++...  ......-.....+..|++.|+++||+++  ||||||||.||||+.   +  ..++|+|||+++.
T Consensus       584 LC~~-sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl~--iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKk  660 (903)
T KOG1027|consen  584 LCAC-SLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSLK--IVHRDLKPQNILISVPSADGTLRAKISDFGLSKK  660 (903)
T ss_pred             Hhhh-hHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhcc--cccccCCCceEEEEccCCCcceeEEecccccccc
Confidence            9964 999998752  1111111334567889999999999999  999999999999986   3  5799999999998


Q ss_pred             hhhh------------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCcccc
Q 006019          527 IAMA------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFV  593 (664)
Q Consensus       527 ~~~~------------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (664)
                      +...            ...+.+||......-+.+.||+|+|||+|+.+| |++||..   .+ +.-..++.+...+..+ 
T Consensus       661 l~~~~sS~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd---~~-~R~~NIl~~~~~L~~L-  735 (903)
T KOG1027|consen  661 LAGGKSSFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGD---SL-ERQANILTGNYTLVHL-  735 (903)
T ss_pred             cCCCcchhhcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCc---hH-HhhhhhhcCccceeee-
Confidence            7532            223446777766666778999999999999999 6999931   11 1111222222222111 


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          594 DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       594 d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                          .. .+++  +..+|+.++++.+|..||++.+|+.
T Consensus       736 ----~~-~~d~--eA~dLI~~ml~~dP~~RPsa~~VL~  766 (903)
T KOG1027|consen  736 ----EP-LPDC--EAKDLISRMLNPDPQLRPSATDVLN  766 (903)
T ss_pred             ----cc-CchH--HHHHHHHHhcCCCcccCCCHHHHhC
Confidence                11 1122  7889999999999999999999873

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.93  E-value=1.4e-26  Score=230.41  Aligned_cols=254  Identities=16%  Similarity=0.222  Sum_probs=186.9

Q ss_pred             HHHHHHhhhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CC-----cccceEE
Q 006019          366 ELEAACEDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HK-----NFVNLIG  438 (664)
Q Consensus       366 el~~~~~~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~-----niv~l~g  438 (664)
                      |+....+.+...+|+|.||.|-++..+ .+..||||+++.-.      ...+.-+-|++++.++. +.     -+|.+.+
T Consensus        85 D~l~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~------kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~  158 (415)
T KOG0671|consen   85 DILTNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVD------KYREAALIEIEVLQKINESDPNGKFRCVQMRD  158 (415)
T ss_pred             cccccceehhhhhcCCcccceEEEeecCCCceehHHHHHHHH------HHhhHHHHHHHHHHHHHhcCCCCceEEEeeeh
Confidence            333344445578999999999999854 47899999885322      23456678999999993 32     2677777


Q ss_pred             EEecCCCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecC------
Q 006019          439 FCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE------  512 (664)
Q Consensus       439 ~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~------  512 (664)
                      ++.-.+  +.++|+|.| +-|+++++..+....+.......|+.|++++++|||+.+  ++|-||||+|||+.+      
T Consensus       159 wFdyrg--hiCivfell-G~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~k--l~HTDLKPENILfvss~~~~~  233 (415)
T KOG0671|consen  159 WFDYRG--HICIVFELL-GLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDLK--LTHTDLKPENILFVSSEYFKT  233 (415)
T ss_pred             hhhccC--ceEEEEecc-ChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhcc--eeecCCChheEEEeccceEEE
Confidence            777666  779999988 559999999888888999999999999999999999999  999999999999852      


Q ss_pred             --------------CCceEecccCchhhhhh------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCC
Q 006019          513 --------------DYAAKLSDLSFWNEIAM------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDN  572 (664)
Q Consensus       513 --------------~~~~kl~DfGla~~~~~------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~  572 (664)
                                    +..+||.|||.|.....      .+..+.+||...+-..+..+||||+||||.|++||..-|...+
T Consensus       234 ~~~k~~~~~~r~~ks~~I~vIDFGsAtf~~e~hs~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHe  313 (415)
T KOG0671|consen  234 YNPKKKVCFIRPLKSTAIKVIDFGSATFDHEHHSTIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTHE  313 (415)
T ss_pred             eccCCccceeccCCCcceEEEecCCcceeccCcceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccCC
Confidence                          24579999999886642      3456778999998899999999999999999999998774221


Q ss_pred             CChHHH--HHHHhcCC-------C---------CC-----------ccccCCCC-----CCCCHHHHHHHHHHHHHhccC
Q 006019          573 GSLEDW--AADYLSGV-------Q---------PL-----------QQFVDPTL-----SSFDEEQLETLGELIKSCVRA  618 (664)
Q Consensus       573 ~~~~~~--~~~~~~~~-------~---------~~-----------~~~~d~~~-----~~~~~~~~~~l~~l~~~Cl~~  618 (664)
                       +.+..  +..++...       .         .+           ..+.++..     .........++.+|+.+++..
T Consensus       314 -n~EHLaMMerIlGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~f  392 (415)
T KOG0671|consen  314 -NLEHLAMMERILGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEF  392 (415)
T ss_pred             -cHHHHHHHHHhhCCCcHHHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHcc
Confidence             22221  11111100       0         00           00000000     001123445799999999999


Q ss_pred             CCCCCCCHHHHHH
Q 006019          619 DPEKRPTMRDIAA  631 (664)
Q Consensus       619 ~P~~RPs~~ev~~  631 (664)
                      ||.+|+|++|+++
T Consensus       393 DP~~RiTl~EAL~  405 (415)
T KOG0671|consen  393 DPARRITLREALS  405 (415)
T ss_pred             CccccccHHHHhc
Confidence            9999999999875

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.93  E-value=4.5e-26  Score=211.50  Aligned_cols=242  Identities=16%  Similarity=0.252  Sum_probs=177.5

Q ss_pred             hcccccCCCeEEEEEE-ECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcccceEEEEecCCCceeEEEE
Q 006019          375 SNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      .+++|+|-|+.||.|. ..+...++||+++.-.        .+.+.+|+++|..++ ||||++|+....++......||+
T Consensus        43 vrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVk--------kkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaLiF  114 (338)
T KOG0668|consen   43 VRKVGRGKYSEVFEGINITNNEKCVIKILKPVK--------KKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSLIF  114 (338)
T ss_pred             HHHHcCccHhhHhcccccCCCceEEEeeechHH--------HHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchhHh
Confidence            4679999999999998 5677889999986433        356899999999997 99999999999877655678999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCC-CceEecccCchhhhhhhh
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED-YAAKLSDLSFWNEIAMAE  531 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~-~~~kl~DfGla~~~~~~~  531 (664)
                      ||+.+-+....-     ..|+-........++++||.|+|+.+  |.|||+||.|+++|.. -..+++|+|+|.......
T Consensus       115 E~v~n~Dfk~ly-----~tl~d~dIryY~~elLkALdyCHS~G--ImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~  187 (338)
T KOG0668|consen  115 EYVNNTDFKQLY-----PTLTDYDIRYYIYELLKALDYCHSMG--IMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGK  187 (338)
T ss_pred             hhhccccHHHHh-----hhhchhhHHHHHHHHHHHHhHHHhcC--cccccCCcceeeechhhceeeeeecchHhhcCCCc
Confidence            999997776543     24666667778899999999999999  9999999999999954 579999999998875443


Q ss_pred             hhc--------cccccc-CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHH-hcCCC-------CCccccC
Q 006019          532 MAA--------TSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY-LSGVQ-------PLQQFVD  594 (664)
Q Consensus       532 ~~~--------~~pe~~-~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~-~~~~~-------~~~~~~d  594 (664)
                      .+.        ..||+. ..+.+...-|+|||||++.+|+..+.||..+..+-.+.++-. +-+.+       ...-.+|
T Consensus       188 eYnVRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakVLGt~el~~Yl~KY~i~Ld  267 (338)
T KOG0668|consen  188 EYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKVLGTDELYAYLNKYQIDLD  267 (338)
T ss_pred             eeeeeeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHhChHHHHHHHHHHccCCC
Confidence            221        234432 223457778999999999999999999965444433333110 00000       0000112


Q ss_pred             CCCCC------------C----CH-HHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          595 PTLSS------------F----DE-EQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       595 ~~~~~------------~----~~-~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      |....            +    .. -...++.+++.+.+..|-.+|+|++|.+.
T Consensus       268 p~~~~i~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYDHqeRlTakEam~  321 (338)
T KOG0668|consen  268 PQFEDILGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYDHQERLTAKEAMA  321 (338)
T ss_pred             hhHhhHhhccccccHHHhCCccccccCChHHHHHHHHHHhhccccccchHHHhc
Confidence            21110            0    00 12256889999999999999999998764

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=1.1e-26  Score=237.43  Aligned_cols=231  Identities=16%  Similarity=0.195  Sum_probs=183.9

Q ss_pred             cccccCCCeEEEEEEECCCc-EEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGTLSNGV-EIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~~~-~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      ..||-|+||.|-....++.. .+|+|++++...-+  ....+....|-.+|...+.|.||+++--+.+..  ..|++||-
T Consensus       426 aTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVd--tkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~k--yvYmLmEa  501 (732)
T KOG0614|consen  426 ATLGVGGFGRVELVKVNSQKATFALKILKKKHIVD--TKQQEHVFSERNIMMECRSDFIVRLYRTFRDSK--YVYMLMEA  501 (732)
T ss_pred             hhcccCccceEEEEEecccchHHHHHHHhHhhccc--hhHHHHHHhHHHHHHhcCchHHHHHHHHhccch--hhhhhHHh
Confidence            46999999999999876543 37888776543333  344567889999999999999999999888877  67999999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhhhhhc
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAA  534 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~~~~~  534 (664)
                      |-+|.|...|+.  .+.++..+..-++..+.+|++|||+++  ||.|||||+|++||.+|-+||-|||+|+.+......+
T Consensus       502 ClGGElWTiLrd--Rg~Fdd~tarF~~acv~EAfeYLH~k~--iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~g~KTw  577 (732)
T KOG0614|consen  502 CLGGELWTILRD--RGSFDDYTARFYVACVLEAFEYLHRKG--IIYRDLKPENLLLDNRGYLKLVDFGFAKKIGSGRKTW  577 (732)
T ss_pred             hcCchhhhhhhh--cCCcccchhhhhHHHHHHHHHHHHhcC--ceeccCChhheeeccCCceEEeehhhHHHhccCCcee
Confidence            999999999974  456888888889999999999999999  9999999999999999999999999999997654433


Q ss_pred             --------ccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHH
Q 006019          535 --------TSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE  606 (664)
Q Consensus       535 --------~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  606 (664)
                              .+||...........|.||+||++|||+||++||..  .+.......++.+.+.+         .+|.....
T Consensus       578 TFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~--~dpmktYn~ILkGid~i---------~~Pr~I~k  646 (732)
T KOG0614|consen  578 TFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSG--VDPMKTYNLILKGIDKI---------EFPRRITK  646 (732)
T ss_pred             eecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCC--CchHHHHHHHHhhhhhh---------hcccccch
Confidence                    345555556667889999999999999999999942  33333334444443221         23444456


Q ss_pred             HHHHHHHHhccCCCCCCCC
Q 006019          607 TLGELIKSCVRADPEKRPT  625 (664)
Q Consensus       607 ~l~~l~~~Cl~~~P~~RPs  625 (664)
                      ...+++++....+|.+|..
T Consensus       647 ~a~~Lik~LCr~~P~ERLG  665 (732)
T KOG0614|consen  647 TATDLIKKLCRDNPTERLG  665 (732)
T ss_pred             hHHHHHHHHHhcCcHhhhc
Confidence            6789999988999999975

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.92  E-value=1.5e-26  Score=219.54  Aligned_cols=247  Identities=23%  Similarity=0.407  Sum_probs=187.1

Q ss_pred             hhhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      ++..+|.+...|..|+|+|..+ .+++|++.+..   +.....++|.+|.-.|+-+.||||..++|.|....  ...++.
T Consensus       193 nl~tkl~e~hsgelwrgrwqgn-divakil~vr~---~t~risrdfneefp~lrifshpnilpvlgacnspp--nlv~is  266 (448)
T KOG0195|consen  193 NLITKLAESHSGELWRGRWQGN-DIVAKILNVRE---VTARISRDFNEEFPALRIFSHPNILPVLGACNSPP--NLVIIS  266 (448)
T ss_pred             hhhhhhccCCCcccccccccCc-chhhhhhhhhh---cchhhcchhhhhCcceeeecCCchhhhhhhccCCC--CceEee
Confidence            3445789999999999999654 45567766533   44556789999999999999999999999998765  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEec--c--cCchhhhh
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLS--D--LSFWNEIA  528 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~--D--fGla~~~~  528 (664)
                      .|||.|+|+..||+...-.++-.+..++|.+||+|++|||+..|-|..-.|.+..+++|++.+++|+  |  |.+-....
T Consensus       267 q~mp~gslynvlhe~t~vvvd~sqav~faldiargmaflhslep~ipr~~lns~hvmidedltarismad~kfsfqe~gr  346 (448)
T KOG0195|consen  267 QYMPFGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSLEPMIPRFYLNSKHVMIDEDLTARISMADTKFSFQEVGR  346 (448)
T ss_pred             eeccchHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhcchhhhhhhcccceEEecchhhhheecccceeeeecccc
Confidence            9999999999999888888888999999999999999999988777777899999999999999885  3  22211112


Q ss_pred             hhhhhcccccccCCCC---CCcCCcchhhHHHHHHHHhCCCCccCCCCChHHH-HHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          529 MAEMAATSKKLSSAPS---ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDW-AADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       529 ~~~~~~~~pe~~~~~~---~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                      ....++.+||-.+...   --.++|+|||.|++||+.|.+.||..  -...+. .+-.+   +.+...       .|+..
T Consensus       347 ~y~pawmspealqrkped~n~raadmwsfaillwel~trevpfad--lspmecgmkial---eglrv~-------ippgi  414 (448)
T KOG0195|consen  347 AYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFAD--LSPMECGMKIAL---EGLRVH-------IPPGI  414 (448)
T ss_pred             ccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhcccccccc--CCchhhhhhhhh---cccccc-------CCCCc
Confidence            2233445565443322   23568999999999999999999932  111111 00111   112222       23344


Q ss_pred             HHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhh
Q 006019          605 LETLGELIKSCVRADPEKRPTMRDIAAILREIT  637 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~  637 (664)
                      ...+.++|.-|+.+||.+||.|..|+-.||++.
T Consensus       415 s~hm~klm~icmnedpgkrpkfdmivpilekm~  447 (448)
T KOG0195|consen  415 SRHMNKLMNICMNEDPGKRPKFDMIVPILEKMI  447 (448)
T ss_pred             cHHHHHHHHHHhcCCCCcCCCcceehhhHHHhc
Confidence            456889999999999999999999999999864

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=8.1e-26  Score=214.65  Aligned_cols=251  Identities=14%  Similarity=0.191  Sum_probs=178.2

Q ss_pred             cccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC---ceeEEE
Q 006019          376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP---FTRMMV  451 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~---~~~~lV  451 (664)
                      +.||.|+||.||.... ++|+.||.|++..-...   -...+.+.+|+++|..++|.|+...+........   .+.|++
T Consensus        59 RPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~---L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV~  135 (449)
T KOG0664|consen   59 RPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQN---LASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYVL  135 (449)
T ss_pred             CcccccceeEEEeccCCCCccchhHhhcchHHHH---HHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHHH
Confidence            6799999999999885 47999999987532211   2345778999999999999999999887654332   146889


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh-
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  530 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~-  530 (664)
                      +|.|. .+|.+.+-  ....|+-....-+..||++||.|||+.+  |.||||||.|.|+++|...||+|||++|..... 
T Consensus       136 TELmQ-SDLHKIIV--SPQ~Ls~DHvKVFlYQILRGLKYLHsA~--ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d~  210 (449)
T KOG0664|consen  136 TELMQ-SDLHKIIV--SPQALTPDHVKVFVYQILRGLKYLHTAN--ILHRDIKPGNLLVNSNCILKICDFGLARTWDQRD  210 (449)
T ss_pred             HHHHH-hhhhheec--cCCCCCcchhhhhHHHHHhhhHHHhhcc--hhhccCCCccEEeccCceEEecccccccccchhh
Confidence            99995 48887764  4566888888889999999999999999  999999999999999999999999999866322 


Q ss_pred             ---------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCC-ChHHHHHHHhcC----------CCCC
Q 006019          531 ---------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNG-SLEDWAADYLSG----------VQPL  589 (664)
Q Consensus       531 ---------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~-~~~~~~~~~~~~----------~~~~  589 (664)
                               ..++.+||..++ ..++.+.||||.||++.|++-.+.-|...+. ...+.+.+.+..          ++.-
T Consensus       211 ~~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQAq~PiqQL~lItdLLGTPs~EaMr~ACEGAk  290 (449)
T KOG0664|consen  211 RLNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQAAGPIEQLQMIIDLLGTPSQEAMKYACEGAK  290 (449)
T ss_pred             hhhhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhccChHHHHHHHHHHhCCCcHHHHHHHhhhhH
Confidence                     345667887654 5589999999999999999987766632110 001111111100          0000


Q ss_pred             ccc-----cCCCCC-----CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 006019          590 QQF-----VDPTLS-----SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR  634 (664)
Q Consensus       590 ~~~-----~d~~~~-----~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~  634 (664)
                      ..+     ..|.+.     ..+.+.-.+...+..+.+..||+.|.+..+.+..+.
T Consensus       291 ~H~LR~~~k~Ps~~vLYtlsS~~~~~heav~~~~~~l~~d~dkris~~~A~~~~~  345 (449)
T KOG0664|consen  291 NHVLRAGLRAPDTQRLYKIASPDDKNHEAVDLLQKLLHFDPDKRISVEEALQHRY  345 (449)
T ss_pred             HHhhccCCCCCCccceeeecCCcccchHHHHHHHHHhCCCCcccccHhhhccccc
Confidence            001     111111     011122234567778889999999999888776543

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.92  E-value=3.6e-24  Score=211.93  Aligned_cols=187  Identities=24%  Similarity=0.357  Sum_probs=157.5

Q ss_pred             hhcccccCCCeEEEEEEECC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|++|.||++...+ +..+++|.+......    ...+.+.+|++.+++++|+|++++++++....  ..++++
T Consensus         3 ~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~----~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~--~~~~v~   76 (225)
T smart00221        3 LGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTE----KQREEFLREIRILKKLKHPNIVKLYGVFEDPE--PLYLVM   76 (225)
T ss_pred             eeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccch----HHHHHHHHHHHHHHhCCCCChhhheeeeecCC--ceEEEE
Confidence            45789999999999999865 889999998754322    24578999999999999999999999998766  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhhh-
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-  531 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~~-  531 (664)
                      ||+++++|.+++..... .+++.....++.+++.++.|||+++  ++|+|++++||+++.++.++|+|||.+....... 
T Consensus        77 e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~lh~~~--i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~  153 (225)
T smart00221       77 EYCEGGDLFDYLRKKGG-KLSEEEARFYLRQILEALEYLHSLG--IVHRDLKPENILLGMDGLVKLADFGLARFIHRDLA  153 (225)
T ss_pred             eccCCCCHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEcCCCCEEEeeCceeeEecCccc
Confidence            99999999999864321 2889999999999999999999998  9999999999999999999999999887664321 


Q ss_pred             ---------hhccccccc-CCCCCCcCCcchhhHHHHHHHHhCCCCcc
Q 006019          532 ---------MAATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYL  569 (664)
Q Consensus       532 ---------~~~~~pe~~-~~~~~s~ksDVySfGvvl~El~tG~~P~~  569 (664)
                               ..+.+||.. .....+.++|||+||++++||++|+.||.
T Consensus       154 ~~~~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~  201 (225)
T smart00221      154 ALLKTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFS  201 (225)
T ss_pred             ccccceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCcc
Confidence                     123456655 55566779999999999999999999994

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=1.2e-24  Score=227.50  Aligned_cols=187  Identities=16%  Similarity=0.297  Sum_probs=149.5

Q ss_pred             cccccCCCeEEEEEE-ECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      +.||-|+||+|+.++ .++...+|.|.+.+...-.  .........|.+||..-..+-||+|+-.+.+.+  ..|.||||
T Consensus       635 k~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~--rnQvaHVKAERDILAEADn~WVVrLyySFQDkd--nLYFVMdY  710 (1034)
T KOG0608|consen  635 KTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLM--RNQVAHVKAERDILAEADNEWVVRLYYSFQDKD--NLYFVMDY  710 (1034)
T ss_pred             eeecccccceeEEEeecchhhHHHHhhhHHHHHHh--hhhhhhhhhhhhhHhhcCCcceEEEEEEeccCC--ceEEEEec
Confidence            579999999999998 4556778888876543222  234456889999999999999999998888777  78999999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhhh---
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE---  531 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~~---  531 (664)
                      +++|++-.+|-  ..+.+.+.....++..+..|+++.|..+  +|||||||.|||||.+|.+||+|||++.-+....   
T Consensus       711 IPGGDmMSLLI--rmgIFeE~LARFYIAEltcAiesVHkmG--FIHRDiKPDNILIDrdGHIKLTDFGLCTGfRWTHdsk  786 (1034)
T KOG0608|consen  711 IPGGDMMSLLI--RMGIFEEDLARFYIAELTCAIESVHKMG--FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSK  786 (1034)
T ss_pred             cCCccHHHHHH--HhccCHHHHHHHHHHHHHHHHHHHHhcc--ceecccCccceEEccCCceeeeeccccccceeccccc
Confidence            99999988874  2345666666667779999999999999  9999999999999999999999999965431100   


Q ss_pred             ------------------------------------------------hhcccccccCCCCCCcCCcchhhHHHHHHHHh
Q 006019          532 ------------------------------------------------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT  563 (664)
Q Consensus       532 ------------------------------------------------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t  563 (664)
                                                                      ..+.+||......++.-+|.||.||||+||+.
T Consensus       787 YYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdwws~gvil~em~~  866 (1034)
T KOG0608|consen  787 YYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDWWSVGVILYEMLV  866 (1034)
T ss_pred             cccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchhhHhhHHHHHHhh
Confidence                                                            01123455555567888999999999999999


Q ss_pred             CCCCccC
Q 006019          564 GRLPYLV  570 (664)
Q Consensus       564 G~~P~~~  570 (664)
                      |+.||..
T Consensus       867 g~~pf~~  873 (1034)
T KOG0608|consen  867 GQPPFLA  873 (1034)
T ss_pred             CCCCccC
Confidence            9999953

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.90  E-value=6e-24  Score=207.06  Aligned_cols=244  Identities=17%  Similarity=0.236  Sum_probs=176.7

Q ss_pred             cccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC----ceeEE
Q 006019          376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----FTRMM  450 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~----~~~~l  450 (664)
                      ..+|.|.- .|.-+-. -.++.||+|++.... ..  ....++-.+|..++..+.|+||++++.+++-...    .+.|+
T Consensus        23 ~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf-~n--~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e~y~   98 (369)
T KOG0665|consen   23 KPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPF-QN--QTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQEVYL   98 (369)
T ss_pred             cccCCCCc-eEEecchhhccCceehhhhcCcc-cc--CccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHhHHH
Confidence            34777776 5555542 247889999886542 22  2234667889999999999999999999865331    14689


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  530 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~  530 (664)
                      |||||. ++|...++    ..++-.+...|..|++.|+.|||+.+  |+||||||+||++..+...||.|||+++.....
T Consensus        99 v~e~m~-~nl~~vi~----~elDH~tis~i~yq~~~~ik~lhs~~--IihRdLkPsnivv~~~~~lKi~dfg~ar~e~~~  171 (369)
T KOG0665|consen   99 VMELMD-ANLCQVIL----MELDHETISYILYQMLCGIKHLHSAG--IIHRDLKPSNIVVNSDCTLKILDFGLARTEDTD  171 (369)
T ss_pred             HHHhhh-hHHHHHHH----HhcchHHHHHHHHHHHHHHHHHHhcc--eeecccCcccceecchhheeeccchhhcccCcc
Confidence            999995 48888776    34677788899999999999999999  999999999999999999999999999876543


Q ss_pred             --------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCC---------------
Q 006019          531 --------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ---------------  587 (664)
Q Consensus       531 --------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~---------------  587 (664)
                              +..+.+||...+..+.+.+||||.||++.||++|+.-|. +...+.+|.+..-.-..               
T Consensus       172 ~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~-g~d~idQ~~ki~~~lgtpd~~F~~qL~~~~r~  250 (369)
T KOG0665|consen  172 FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFP-GKDHIDQWNKIIEQLGTPDPSFMKQLQPTVRN  250 (369)
T ss_pred             cccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEec-CchHHHHHHHHHHHhcCCCHHHHHHhhHHHHH
Confidence                    224456777666668999999999999999999998774 33445555432211000               


Q ss_pred             -----------CCcccc-CCCC---CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          588 -----------PLQQFV-DPTL---SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       588 -----------~~~~~~-d~~~---~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                                 ...+.+ |...   .+.++-....+.+++.+++..+|++|-+.+++++
T Consensus       251 yv~~~~~y~~~~f~~~fpD~~f~~~~e~~~~~~~~ardll~~MLvi~pe~Risv~daL~  309 (369)
T KOG0665|consen  251 YVENRPQYQAISFSELFPDSLFPVVLEGSKLDCSLARDLLSKMLVIDPEKRISVDDALR  309 (369)
T ss_pred             HhhcChHhhccchhhhCCcccccccccCCccchHHHHHHHHHhhccChhhcccHHHHhc
Confidence                       000000 0000   0111122345789999999999999999999876

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.89  E-value=6.6e-24  Score=223.89  Aligned_cols=236  Identities=20%  Similarity=0.286  Sum_probs=181.7

Q ss_pred             cccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      ..+|.|.||.|||++. ..+...|||.++.....++     .-..+|+-+++..+|+|||.++|-+...+  ..++.|||
T Consensus        21 qrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~-----~~iqqei~~~~dc~h~nivay~gsylr~d--klwicMEy   93 (829)
T KOG0576|consen   21 QRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDF-----SGIQQEIGMLRDCRHPNIVAYFGSYLRRD--KLWICMEY   93 (829)
T ss_pred             eeecCCcccchhhhcccccCchhhheeeeccCCccc-----cccccceeeeecCCCcChHHHHhhhhhhc--CcEEEEEe
Confidence            6799999999999995 4688899999987665542     44678999999999999999999998776  67999999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh-----
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM-----  529 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~-----  529 (664)
                      |.+|+|.+.-|  ....++..+....++...+|++|||+.+  -+|||+|-.|||+++.+.+|++|||.+..+..     
T Consensus        94 cgggslQdiy~--~TgplselqiayvcRetl~gl~ylhs~g--k~hRdiKGanilltd~gDvklaDfgvsaqitati~Kr  169 (829)
T KOG0576|consen   94 CGGGSLQDIYH--VTGPLSELQIAYVCRETLQGLKYLHSQG--KIHRDIKGANILLTDEGDVKLADFGVSAQITATIAKR  169 (829)
T ss_pred             cCCCcccceee--ecccchhHHHHHHHhhhhccchhhhcCC--cccccccccceeecccCceeecccCchhhhhhhhhhh
Confidence            99999999876  3467889999999999999999999998  89999999999999999999999998766532     


Q ss_pred             ----hhhhccccccc---CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          530 ----AEMAATSKKLS---SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       530 ----~~~~~~~pe~~---~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                          +..++.+||..   ..+.+..++|||+.|+...|+---+.|..    ++......++......   -.+.+. -..
T Consensus       170 ksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplf----dlhpmr~l~LmTkS~~---qpp~lk-Dk~  241 (829)
T KOG0576|consen  170 KSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLF----DLHPMRALFLMTKSGF---QPPTLK-DKT  241 (829)
T ss_pred             hcccCCccccchhHHHHHhcccccccccccccccchhhhhhcCCccc----ccchHHHHHHhhccCC---CCCccc-CCc
Confidence                23445566643   34557899999999999999977666641    1111111122111111   111221 122


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHHHH
Q 006019          603 EQLETLGELIKSCVRADPEKRPTMRDIA  630 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~~ev~  630 (664)
                      ...+.+.++++.|+.++|++||++..++
T Consensus       242 kws~~fh~fvK~altknpKkRptaeklL  269 (829)
T KOG0576|consen  242 KWSEFFHNFVKGALTKNPKKRPTAEKLL  269 (829)
T ss_pred             cchHHHHHHHHHHhcCCCccCCChhhhe
Confidence            3345688999999999999999987654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.89  E-value=6.5e-24  Score=248.73  Aligned_cols=187  Identities=16%  Similarity=0.180  Sum_probs=135.2

Q ss_pred             ccCC-CcccceEEEEecCC-----CceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEE
Q 006019          427 KVNH-KNFVNLIGFCEEEE-----PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAH  500 (664)
Q Consensus       427 ~l~H-~niv~l~g~~~~~~-----~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivH  500 (664)
                      .++| .||+++++++....     ....+.++||+ .++|+++++. ....+++..++.|+.||++||+|||+++  |+|
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~al~~lH~~g--IvH  103 (793)
T PLN00181         28 SLSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECE-DVSLRQWLDN-PDRSVDAFECFHVFRQIVEIVNAAHSQG--IVV  103 (793)
T ss_pred             hhhHHHHHHHhhcccCCccccccccchhhhhhccC-CccHHHHHhc-ccccccHHHHHHHHHHHHHHHHHHHhCC--eee
Confidence            3456 68888888872211     11346788988 5599999963 2456999999999999999999999998  999


Q ss_pred             eCcCCCCeEec-------------------CCCceEecccCchhhhhh-------------------------hhhhccc
Q 006019          501 NYLNSSAVHLT-------------------EDYAAKLSDLSFWNEIAM-------------------------AEMAATS  536 (664)
Q Consensus       501 rDLk~~NILld-------------------~~~~~kl~DfGla~~~~~-------------------------~~~~~~~  536 (664)
                      |||||+||||+                   .++.+|++|||+++....                         ....|.+
T Consensus       104 rDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  183 (793)
T PLN00181        104 HNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWYTS  183 (793)
T ss_pred             ccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcceEC
Confidence            99999999994                   456778888888764311                         1223678


Q ss_pred             ccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhc
Q 006019          537 KKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCV  616 (664)
Q Consensus       537 pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl  616 (664)
                      ||+.....++.++|||||||+||||++|..|+.....    ........      ..++..    ........+++.+||
T Consensus       184 PE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~~----~~~~~~~~------~~~~~~----~~~~~~~~~~~~~~L  249 (793)
T PLN00181        184 PEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEKSR----TMSSLRHR------VLPPQI----LLNWPKEASFCLWLL  249 (793)
T ss_pred             hhhhccCCCCchhhhhhHHHHHHHHhhCCCchhhHHH----HHHHHHHh------hcChhh----hhcCHHHHHHHHHhC
Confidence            9988888889999999999999999999888732111    11111100      011111    011233568889999


Q ss_pred             cCCCCCCCCHHHHHH
Q 006019          617 RADPEKRPTMRDIAA  631 (664)
Q Consensus       617 ~~~P~~RPs~~ev~~  631 (664)
                      +.+|.+||+|.|+++
T Consensus       250 ~~~P~~Rps~~eil~  264 (793)
T PLN00181        250 HPEPSCRPSMSELLQ  264 (793)
T ss_pred             CCChhhCcChHHHhh
Confidence            999999999999976

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.89  E-value=4.6e-23  Score=196.14  Aligned_cols=242  Identities=15%  Similarity=0.281  Sum_probs=167.0

Q ss_pred             hhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMM  450 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~l  450 (664)
                      ++.+.+|+|.||.+-.++++ ....+++|.+....      ...++|.+|..-=-.+ .|.||+.-+.+..+... ..+.
T Consensus        27 ~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~------tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d-~YvF   99 (378)
T KOG1345|consen   27 TINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQ------TTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSD-AYVF   99 (378)
T ss_pred             hHHHHhcccceeeEEeeeccCCceEEEeeccCcch------hhHHHHHHHhccceeeccchhhhHHHHHHhhcCc-eEEE
Confidence            45578999999999999976 46788888875432      3457899887754444 58999987665443322 4578


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEec-C-CCceEecccCchhhhh
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT-E-DYAAKLSDLSFWNEIA  528 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld-~-~~~~kl~DfGla~~~~  528 (664)
                      ++||+|.|+|.+.+.   ...+......+++.|++.|+.|+|+++  +||||||.+|||+- . ...+|++|||..+..+
T Consensus       100 ~qE~aP~gdL~snv~---~~GigE~~~K~v~~ql~SAi~fMHskn--lVHRdlK~eNiLif~~df~rvKlcDFG~t~k~g  174 (378)
T KOG1345|consen  100 VQEFAPRGDLRSNVE---AAGIGEANTKKVFAQLLSAIEFMHSKN--LVHRDLKAENILIFDADFYRVKLCDFGLTRKVG  174 (378)
T ss_pred             eeccCccchhhhhcC---cccccHHHHHHHHHHHHHHHHHhhccc--hhhcccccceEEEecCCccEEEeeecccccccC
Confidence            999999999998774   345777788899999999999999999  99999999999984 3 3589999999987664


Q ss_pred             hhh------hhcccccccC-----CCCCCcCCcchhhHHHHHHHHhCCCCccCC---CCChHHHHHHHhcCCCCCccccC
Q 006019          529 MAE------MAATSKKLSS-----APSASLESNVYNFGVLLFEMVTGRLPYLVD---NGSLEDWAADYLSGVQPLQQFVD  594 (664)
Q Consensus       529 ~~~------~~~~~pe~~~-----~~~~s~ksDVySfGvvl~El~tG~~P~~~~---~~~~~~~~~~~~~~~~~~~~~~d  594 (664)
                      ...      ..+.+||...     .-.+...+|||.|||+++.++||+.||..+   +..-.+|.+..-.......    
T Consensus       175 ~tV~~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~~~d~~Y~~~~~w~~rk~~~~P----  250 (378)
T KOG1345|consen  175 TTVKYLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKASIMDKPYWEWEQWLKRKNPALP----  250 (378)
T ss_pred             ceehhhhhhcccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchhhhccCchHHHHHHHhcccCccCc----
Confidence            321      1222333221     112466789999999999999999999522   2222333322111111111    


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 006019          595 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR  634 (664)
Q Consensus       595 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~  634 (664)
                      .....+    .+.+.++.++-+..+|++|=-..++.++-.
T Consensus       251 ~~F~~f----s~~a~r~Fkk~lt~~~~drcki~~~kk~rk  286 (378)
T KOG1345|consen  251 KKFNPF----SEKALRLFKKSLTPRFKDRCKIWTAKKMRK  286 (378)
T ss_pred             hhhccc----CHHHHHHHHHhcCCcccccchhHHHHHHHH
Confidence            111122    245667788888999999855555544443

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.89  E-value=4.3e-22  Score=203.61  Aligned_cols=130  Identities=22%  Similarity=0.240  Sum_probs=109.6

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-----C---CcccceEEEEecCC
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-----H---KNFVNLIGFCEEEE  444 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-----H---~niv~l~g~~~~~~  444 (664)
                      ..++||-|.|.+||.+.. .+.+.||+|+++..      .+..+.-+.||++|++++     |   ..||+|+.++...+
T Consensus        82 v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSA------qhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsG  155 (590)
T KOG1290|consen   82 VQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSA------QHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSG  155 (590)
T ss_pred             EEEeccccccceeEEEeeccCCeEEEEEEEehh------hHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecC
Confidence            447899999999999984 46789999988643      245567789999999984     3   36999999997654


Q ss_pred             C--ceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhh-cCCCCeEEeCcCCCCeEecC
Q 006019          445 P--FTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMH-QLNPPIAHNYLNSSAVHLTE  512 (664)
Q Consensus       445 ~--~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH-~~~~~ivHrDLk~~NILld~  512 (664)
                      +  .+.++|+||+ +-+|..++.....+.+......+|+.||+.||.||| +|+  |||-||||+|||+..
T Consensus       156 pNG~HVCMVfEvL-GdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~ecg--IIHTDlKPENvLl~~  223 (590)
T KOG1290|consen  156 PNGQHVCMVFEVL-GDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHRECG--IIHTDLKPENVLLCS  223 (590)
T ss_pred             CCCcEEEEEehhh-hhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHhcC--ccccCCCcceeeeec
Confidence            3  3789999999 669999988777788999999999999999999999 488  999999999999964

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.89  E-value=4.4e-23  Score=201.06  Aligned_cols=231  Identities=19%  Similarity=0.244  Sum_probs=173.7

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeEEEEE
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+||+|+|.+|..+++. +.+.+|+|++++.-..+  .+...-...|-.+.... +||.+|.|..++....  ..+.|.|
T Consensus       256 ~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nd--dedidwvqtek~vfe~asn~pflvglhscfqtes--rlffvie  331 (593)
T KOG0695|consen  256 RVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVND--DEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTES--RLFFVIE  331 (593)
T ss_pred             eeecCcchhhhhheehcccceeeehhhHHHHhcCC--cccchhHHhhHHHHHhccCCCeEEehhhhhcccc--eEEEEEE
Confidence            78999999999999975 57888999886543322  11122344555555554 6999999999998776  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|+|--+++  ....|+.....-+...|.-||.|||+.+  |+.||||-.|+|+|..+.+|++|||+.+..-.    
T Consensus       332 yv~ggdlmfhmq--rqrklpeeharfys~ei~lal~flh~rg--iiyrdlkldnvlldaeghikltdygmcke~l~~gd~  407 (593)
T KOG0695|consen  332 YVNGGDLMFHMQ--RQRKLPEEHARFYSAEICLALNFLHERG--IIYRDLKLDNVLLDAEGHIKLTDYGMCKEGLGPGDT  407 (593)
T ss_pred             EecCcceeeehh--hhhcCcHHHhhhhhHHHHHHHHHHhhcC--eeeeeccccceEEccCCceeecccchhhcCCCCCcc
Confidence            999999976654  4456888777788889999999999999  99999999999999999999999999886521    


Q ss_pred             -----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCC-----CCChHHHHHHHhcCCCCCccccCCCCCC
Q 006019          530 -----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVD-----NGSLEDWAADYLSGVQPLQQFVDPTLSS  599 (664)
Q Consensus       530 -----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~-----~~~~~~~~~~~~~~~~~~~~~~d~~~~~  599 (664)
                           .+..+.+||...+.++....|.|++||+++||+.|+.||+.-     +.+-+++.-+++-+.    ++      .
T Consensus       408 tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdivgm~n~d~ntedylfqvilek----qi------r  477 (593)
T KOG0695|consen  408 TSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNPDMNTEDYLFQVILEK----QI------R  477 (593)
T ss_pred             cccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcceecCCCcccchhHHHHHHHhhh----cc------c
Confidence                 123345788888999999999999999999999999999621     223344443333221    01      1


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCC
Q 006019          600 FDEEQLETLGELIKSCVRADPEKRP  624 (664)
Q Consensus       600 ~~~~~~~~l~~l~~~Cl~~~P~~RP  624 (664)
                      .|.....+...+++.-+.+||.+|.
T Consensus       478 iprslsvkas~vlkgflnkdp~erl  502 (593)
T KOG0695|consen  478 IPRSLSVKASHVLKGFLNKDPKERL  502 (593)
T ss_pred             ccceeehhhHHHHHHhhcCCcHHhc
Confidence            1222223456778888999999984

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.89  E-value=3.4e-23  Score=212.53  Aligned_cols=202  Identities=16%  Similarity=0.193  Sum_probs=164.6

Q ss_pred             cCCCCCCHHHHHHHHhhhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC------
Q 006019          357 TGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN------  429 (664)
Q Consensus       357 ~~~~~~~~~el~~~~~~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~------  429 (664)
                      +|.-.+...|+....+....-.|+|-|+.|.+|... .|..||||++.....      ..+.=+.|+++|+++.      
T Consensus       419 EGYYrv~igE~LD~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~------M~KtGl~EleiLkKL~~AD~Ed  492 (752)
T KOG0670|consen  419 EGYYRVRIGELLDSRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEV------MHKTGLKELEILKKLNDADPED  492 (752)
T ss_pred             cceEEEehhhhhcceeEEEeccccceeeeeeeccccCCCCeeEEEEeecchH------HhhhhhHHHHHHHHhhccCchh
Confidence            344455667777777666677899999999999954 588999999975443      3355678999999994      


Q ss_pred             CCcccceEEEEecCCCceeEEEEEecCCCChhhhhccc-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCe
Q 006019          430 HKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIK-ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAV  508 (664)
Q Consensus       430 H~niv~l~g~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~-~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NI  508 (664)
                      .-|+++|+-.+...+  +.|||+|-+. -+|.+.|..- ....|.......++.|+.-||..|-.|+  |+|.||||.||
T Consensus       493 k~Hclrl~r~F~hkn--HLClVFE~Ls-lNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c~--vlHaDIKPDNi  567 (752)
T KOG0670|consen  493 KFHCLRLFRHFKHKN--HLCLVFEPLS-LNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKCG--VLHADIKPDNI  567 (752)
T ss_pred             hhHHHHHHHHhhhcc--eeEEEehhhh-chHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhcC--eeecccCccce
Confidence            447889888887777  8899999874 4888888632 3345777888899999999999999999  99999999999


Q ss_pred             EecCCC-ceEecccCchhhhhhh-------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCcc
Q 006019          509 HLTEDY-AAKLSDLSFWNEIAMA-------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYL  569 (664)
Q Consensus       509 Lld~~~-~~kl~DfGla~~~~~~-------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~  569 (664)
                      |+++.- ..||||||.|-.....       .-.|.+||+..+-.|...-|+||.||.||||+||+.-|.
T Consensus       568 LVNE~k~iLKLCDfGSA~~~~eneitPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFp  636 (752)
T KOG0670|consen  568 LVNESKNILKLCDFGSASFASENEITPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFP  636 (752)
T ss_pred             EeccCcceeeeccCccccccccccccHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecC
Confidence            999764 6799999998766432       335668999999999999999999999999999998885

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.88  E-value=3.8e-23  Score=214.74  Aligned_cols=187  Identities=18%  Similarity=0.271  Sum_probs=152.7

Q ss_pred             cccccCCCeEEEEEEECC-CcEEEEEEeeecccCC--Cch-hHHHHHHHHHHHHhccC---CCcccceEEEEecCCCcee
Q 006019          376 NVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKD--WPK-NLEVQFRKKIDTLSKVN---HKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~-~~~vavk~~~~~~~~~--~~~-~~~~~f~~E~~~l~~l~---H~niv~l~g~~~~~~~~~~  448 (664)
                      +.+|+|+||.|+.|.++. ..+|+||.+.+...-.  |-+ ...-..-.|+++|..++   |+||+|++.++.+++  ..
T Consensus       567 q~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEddd--~y  644 (772)
T KOG1152|consen  567 QPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFEDDD--YY  644 (772)
T ss_pred             eeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeecCC--ee
Confidence            679999999999999864 5678888875433110  100 00112557999999997   999999999999888  56


Q ss_pred             EEEEEec-CCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhh
Q 006019          449 MMVFEYA-PNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       449 ~lV~Ey~-~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~  527 (664)
                      ||+||-. ++-+|++++.  -+..++......|..||+.|+++||+++  |||||||-+||.+|.+|-+||+|||.+...
T Consensus       645 yl~te~hg~gIDLFd~IE--~kp~m~E~eAk~IFkQV~agi~hlh~~~--ivhrdikdenvivd~~g~~klidfgsaa~~  720 (772)
T KOG1152|consen  645 YLETEVHGEGIDLFDFIE--FKPRMDEPEAKLIFKQVVAGIKHLHDQG--IVHRDIKDENVIVDSNGFVKLIDFGSAAYT  720 (772)
T ss_pred             EEEecCCCCCcchhhhhh--ccCccchHHHHHHHHHHHhccccccccC--ceecccccccEEEecCCeEEEeeccchhhh
Confidence            9999976 5678999985  3456899999999999999999999999  999999999999999999999999988765


Q ss_pred             hh-------hhhhcccccccCCCCC-CcCCcchhhHHHHHHHHhCCCCc
Q 006019          528 AM-------AEMAATSKKLSSAPSA-SLESNVYNFGVLLFEMVTGRLPY  568 (664)
Q Consensus       528 ~~-------~~~~~~~pe~~~~~~~-s~ksDVySfGvvl~El~tG~~P~  568 (664)
                      ..       +++.+.+||...+..| ...-|||++||+||.++..+.||
T Consensus       721 ksgpfd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpy  769 (772)
T KOG1152|consen  721 KSGPFDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPY  769 (772)
T ss_pred             cCCCcceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCC
Confidence            43       3456678887766554 66789999999999999999998

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.87  E-value=3.8e-22  Score=190.26  Aligned_cols=164  Identities=18%  Similarity=0.228  Sum_probs=122.9

Q ss_pred             CChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----hhhh
Q 006019          458 GTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----AEMA  533 (664)
Q Consensus       458 GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----~~~~  533 (664)
                      |+|.++++. ....++|..+..|+.|++.||+|||+.+        ||+|||++.++.+|+  ||+++....    ....
T Consensus         1 GsL~~~l~~-~~~~l~~~~~~~i~~qi~~~L~~lH~~~--------kp~Nil~~~~~~~~~--fG~~~~~~~~~~~g~~~   69 (176)
T smart00750        1 VSLADILEV-RGRPLNEEEIWAVCLQCLRALRELHRQA--------KSGNILLTWDGLLKL--DGSVAFKTPEQSRVDPY   69 (176)
T ss_pred             CcHHHHHHH-hCCCCCHHHHHHHHHHHHHHHHHHHhcC--------CcccEeEcCccceee--ccceEeeccccCCCccc
Confidence            789999863 2456999999999999999999999876        999999999999999  999876532    2355


Q ss_pred             cccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHH--HHHHH
Q 006019          534 ATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE--TLGEL  611 (664)
Q Consensus       534 ~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~l~~l  611 (664)
                      +.+||......++.|+|||||||++|||+||+.||.... ................    ++.....+.....  ++.++
T Consensus        70 y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  144 (176)
T smart00750       70 FMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEER-ELSAILEILLNGMPAD----DPRDRSNLESVSAARSFADF  144 (176)
T ss_pred             ccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccc-hhcHHHHHHHHHhccC----CccccccHHHHHhhhhHHHH
Confidence            678998888889999999999999999999999995322 1222222222111110    0110111222223  68999


Q ss_pred             HHHhccCCCCCCCCHHHHHHHHHhhh
Q 006019          612 IKSCVRADPEKRPTMRDIAAILREIT  637 (664)
Q Consensus       612 ~~~Cl~~~P~~RPs~~ev~~~L~~i~  637 (664)
                      +.+||+.+|++||++.++++.+..+.
T Consensus       145 i~~cl~~~p~~Rp~~~~ll~~~~~~~  170 (176)
T smart00750      145 MRVCASRLPQRREAANHYLAHCRALF  170 (176)
T ss_pred             HHHHHhcccccccCHHHHHHHHHHHH
Confidence            99999999999999999999987764

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.85  E-value=9.3e-22  Score=209.07  Aligned_cols=230  Identities=20%  Similarity=0.336  Sum_probs=170.4

Q ss_pred             HhccCCCcccceEEEEecCCCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcC
Q 006019          425 LSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLN  504 (664)
Q Consensus       425 l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk  504 (664)
                      |+.+.|.|+.+++|.+.++.  ..++|.+||..|+|.|.+.. ....++|.....+.++++.||+|||.... ..|+.++
T Consensus         1 l~~l~h~n~~~f~g~~~~~~--~~~~i~~~c~rGsl~D~i~~-~~~~~d~~F~~s~~rdi~~Gl~ylh~s~i-~~hg~l~   76 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDGP--EMIVIWEYCSRGSLLDILSN-EDIKLDYFFILSFIRDISKGLAYLHNSPI-GYHGALK   76 (484)
T ss_pred             CcccchhhhhhheeeEecCC--ceEEEEeeecCccHHhHHhc-cccCccHHHHHHHHHHHHHHHHHHhcCcc-eeeeeec
Confidence            45788999999999999886  77999999999999999964 56789999999999999999999997652 3999999


Q ss_pred             CCCeEecCCCceEecccCchhhhhh-----------hhhhcccccccCCC-------CCCcCCcchhhHHHHHHHHhCCC
Q 006019          505 SSAVHLTEDYAAKLSDLSFWNEIAM-----------AEMAATSKKLSSAP-------SASLESNVYNFGVLLFEMVTGRL  566 (664)
Q Consensus       505 ~~NILld~~~~~kl~DfGla~~~~~-----------~~~~~~~pe~~~~~-------~~s~ksDVySfGvvl~El~tG~~  566 (664)
                      ++|+++|.++.+|++|||+......           ....+++||.....       ..+.++|||||||+++|+++.+.
T Consensus        77 s~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~  156 (484)
T KOG1023|consen   77 SSNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSG  156 (484)
T ss_pred             cccceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhccC
Confidence            9999999999999999999766531           12334566654432       25778999999999999999999


Q ss_pred             CccCCC--CChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCC-C-
Q 006019          567 PYLVDN--GSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP-D-  642 (664)
Q Consensus       567 P~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~-~-  642 (664)
                      ||....  ....+.+.....+   ......|.+.... +...++..++.+||..+|++||+++.|...++.+..... . 
T Consensus       157 ~~~~~~~~~~~~eii~~~~~~---~~~~~rP~i~~~~-e~~~~l~~l~~~cw~e~P~~rPs~~~i~~~~~~~~~~~~~~~  232 (484)
T KOG1023|consen  157 PFDLRNLVEDPDEIILRVKKG---GSNPFRPSIELLN-ELPPELLLLVARCWEEIPEKRPSIEQIRSKLLTINKGGSSKG  232 (484)
T ss_pred             ccccccccCChHHHHHHHHhc---CCCCcCcchhhhh-hcchHHHHHHHHhcccChhhCccHHHHHhhhhhhcccccccc
Confidence            996422  2223343332221   1222333333222 344478899999999999999999999999999887642 1 


Q ss_pred             C---CCCCCCcchHHHHhhhhcc
Q 006019          643 G---AIPKLSPLWWAEIEILSTE  662 (664)
Q Consensus       643 ~---~~~~~~~~~~~~~~~~~~~  662 (664)
                      .   .+.+..+.|-..+|..++|
T Consensus       233 nl~D~m~~~le~Y~~nLe~~v~e  255 (484)
T KOG1023|consen  233 NLMDSLFRMLESYADNLEKLVDE  255 (484)
T ss_pred             hhHHHHHHHHHHHHhhhHHHHHH
Confidence            2   2224445555555554443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.84  E-value=1.1e-20  Score=227.42  Aligned_cols=155  Identities=28%  Similarity=0.500  Sum_probs=132.1

Q ss_pred             CchHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCccceeEecC-CcEEEEEeCCCCccccccccccCCCCCCEEEcc
Q 006019           27 SLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSD-GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILR  105 (664)
Q Consensus        27 ~~~~~~~all~~k~~~~~~~~~~l~~W~~~~~~~~~C~w~gv~C~~-~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~  105 (664)
                      ..++|..||++||+++. +|.+.+.+|+   .+.+||.|.||+|++ ++|+.|+|++|+++|.+|+.+..+++|+.|+|+
T Consensus        26 ~~~~~~~~l~~~~~~~~-~~~~~~~~w~---~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls  101 (968)
T PLN00113         26 LHAEELELLLSFKSSIN-DPLKYLSNWN---SSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLS  101 (968)
T ss_pred             CCHHHHHHHHHHHHhCC-CCcccCCCCC---CCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECC
Confidence            35689999999999985 6777889996   567899999999984 799999999999999999999999999999999


Q ss_pred             CCcccccCCcccC-CCCCCCEEEeecCcccccCCccccCCcccceeecccCcccccCCccccCCCCCCEeeCCCCccccc
Q 006019          106 NNSFSGIIPEGFG-ELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  184 (664)
Q Consensus       106 ~N~l~g~ip~~~~-~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~  184 (664)
                      +|.++|.+|..+. .+++|++|+|++|+++|.+|.  +.+++|++|+|++|.++|.+|..++++++|++|+|++|.+++.
T Consensus       102 ~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~  179 (968)
T PLN00113        102 NNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK  179 (968)
T ss_pred             CCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc
Confidence            9999999998765 888999999999988888775  4567777777777777777777777777777777777777777


Q ss_pred             ccc
Q 006019          185 AKK  187 (664)
Q Consensus       185 ~p~  187 (664)
                      +|.
T Consensus       180 ~p~  182 (968)
T PLN00113        180 IPN  182 (968)
T ss_pred             CCh
Confidence            775

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.84  E-value=1.7e-20  Score=196.24  Aligned_cols=138  Identities=16%  Similarity=0.071  Sum_probs=107.2

Q ss_pred             hhcccccCCCeEEEEEEEC--CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS--NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~--~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.+.||+|+||+||+|...  ++..+|||++.............+.|.+|+++|++++|+|+++.+..+   +  ..++|
T Consensus        22 ~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~---~--~~~LV   96 (365)
T PRK09188         22 ETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLAT---G--KDGLV   96 (365)
T ss_pred             EccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEc---C--CcEEE
Confidence            4578999999999999864  577789988753211001123456799999999999999999643222   2  45899


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCc-CCCCeEecCCCceEecccCchhhh
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYL-NSSAVHLTEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDL-k~~NILld~~~~~kl~DfGla~~~  527 (664)
                      |||+++++|... .  ...      ...++.+++++|+|||+.+  |+|||| ||+|||++.++.+||+|||+++..
T Consensus        97 mE~~~G~~L~~~-~--~~~------~~~~~~~i~~aL~~lH~~g--IiHrDL~KP~NILv~~~~~ikLiDFGlA~~~  162 (365)
T PRK09188         97 RGWTEGVPLHLA-R--PHG------DPAWFRSAHRALRDLHRAG--ITHNDLAKPQNWLMGPDGEAAVIDFQLASVF  162 (365)
T ss_pred             EEccCCCCHHHh-C--ccc------hHHHHHHHHHHHHHHHHCC--CeeCCCCCcceEEEcCCCCEEEEECccceec
Confidence            999999999632 1  111      1467889999999999998  999999 999999999999999999998855

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.84  E-value=9.3e-21  Score=191.68  Aligned_cols=240  Identities=18%  Similarity=0.285  Sum_probs=170.1

Q ss_pred             cccccCCCeEEEEEEEC----CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcccceEEEEecCCCceeEE
Q 006019          376 NVIGSSPIGTVYKGTLS----NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMM  450 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~----~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~~~l  450 (664)
                      ++||+|.|++||++.+.    ....||+|.+.....       ......|+++|..+. |.||+++.++....+  ...+
T Consensus        42 ~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~-------p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd--~v~i  112 (418)
T KOG1167|consen   42 NKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSS-------PSRILNELEMLYRLGGSDNIIKLNGCFRNND--QVAI  112 (418)
T ss_pred             ccccccchhhhhhhhHhhhccccceEeeeecccccC-------chHHHHHHHHHHHhccchhhhcchhhhccCC--eeEE
Confidence            78999999999999853    467899999865443       245889999999995 999999999998877  7799


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCC-CceEecccCchhhhhh
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED-YAAKLSDLSFWNEIAM  529 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~-~~~kl~DfGla~~~~~  529 (664)
                      |+||++.-...++..     .++..........+.+||+++|..+  |||||+||+|+|.+.. +.-.|.|||+|.....
T Consensus       113 vlp~~~H~~f~~l~~-----~l~~~~i~~Yl~~ll~Al~~~h~~G--IvHRDiKpsNFL~n~~t~rg~LvDFgLA~~~d~  185 (418)
T KOG1167|consen  113 VLPYFEHDRFRDLYR-----SLSLAEIRWYLRNLLKALAHLHKNG--IVHRDIKPSNFLYNRRTQRGVLVDFGLAQRYDG  185 (418)
T ss_pred             EecccCccCHHHHHh-----cCCHHHHHHHHHHHHHHhhhhhccC--ccccCCCccccccccccCCceEEechhHHHHHh
Confidence            999999988888875     3667788889999999999999999  9999999999999854 6778999999873210


Q ss_pred             hh------h---------hc-----------cccc---------------------ccCC-------CCCCcCCcchhhH
Q 006019          530 AE------M---------AA-----------TSKK---------------------LSSA-------PSASLESNVYNFG  555 (664)
Q Consensus       530 ~~------~---------~~-----------~~pe---------------------~~~~-------~~~s~ksDVySfG  555 (664)
                      ..      .         ..           ..|.                     .+.+       +.-+++.||||-|
T Consensus       186 ~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~QttaiDiws~G  265 (418)
T KOG1167|consen  186 YQQTEHSRSYSGRHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCPRQTTAIDIWSAG  265 (418)
T ss_pred             hhhhhhhhhhhcccCCccccCcccccccccccCCCCceeccCCCccceecccCCCCCCCchHHHhhccCcCCccceeecc
Confidence            00      0         00           0000                     0011       1236789999999


Q ss_pred             HHHHHHHhCCCCccCCC---CChHHHHH----------HHhcCC------CC---Ccc------ccC-CCCC--------
Q 006019          556 VLLFEMVTGRLPYLVDN---GSLEDWAA----------DYLSGV------QP---LQQ------FVD-PTLS--------  598 (664)
Q Consensus       556 vvl~El~tG~~P~~~~~---~~~~~~~~----------~~~~~~------~~---~~~------~~d-~~~~--------  598 (664)
                      ||++-+++++.||....   ..+.+.+.          ..+.+.      ..   +.+      -++ ..+.        
T Consensus       266 VI~Lslls~~~PFf~a~dd~~al~ei~tifG~~~mrk~A~l~g~~~l~~ksn~~~~~e~~~~f~s~~~~~~~~~~q~n~~  345 (418)
T KOG1167|consen  266 VILLSLLSRRYPFFKAKDDADALAEIATIFGSAEMRKCAALPGRILLWQKSNIPTIPELRVNFETLHIESIYKSRQPNTE  345 (418)
T ss_pred             ceeehhhccccccccCccccchHHHHHHHhChHHHHHHhhcCCceeeeccccccccHHHHhchhccChhhccccccccee
Confidence            99999999999995322   22222220          001110      00   000      000 0000        


Q ss_pred             --CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          599 --SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       599 --~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                        ...+..+..+++++.+|+..||.+|.+++|.++
T Consensus       346 ~~~~~d~~~~~~~dlLdk~le~np~kRitAEeALk  380 (418)
T KOG1167|consen  346 REIGSDVFPALLLDLLDKCLELNPQKRITAEDALK  380 (418)
T ss_pred             eccccccccHHHHHHHHHHccCChhhcccHHHHhc
Confidence              011122346889999999999999999998764

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.81  E-value=1.1e-19  Score=174.98  Aligned_cols=143  Identities=13%  Similarity=0.096  Sum_probs=109.4

Q ss_pred             cccccCCCeEEEEEEECCCcEEEEEEeeecccCCCch---------------------hHHHHHHHHHHHHhccCCCccc
Q 006019          376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPK---------------------NLEVQFRKKIDTLSKVNHKNFV  434 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~---------------------~~~~~f~~E~~~l~~l~H~niv  434 (664)
                      ..||+|+||.||+|...+|+.||||+++.........                     ........|++.+.++.|+++.
T Consensus         3 ~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v~   82 (190)
T cd05147           3 GCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGIP   82 (190)
T ss_pred             CccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            5799999999999998889999999997643211000                     0012234599999999888775


Q ss_pred             ceEEEEecCCCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHh-hcCCCCeEEeCcCCCCeEecCC
Q 006019          435 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM-HQLNPPIAHNYLNSSAVHLTED  513 (664)
Q Consensus       435 ~l~g~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yL-H~~~~~ivHrDLk~~NILld~~  513 (664)
                      ....+...    ..++||||++++++.....  ....++.....+++.+++.+|.|+ |+.+  |+||||||+|||++ +
T Consensus        83 ~p~~~~~~----~~~iVmE~i~g~~l~~~~~--~~~~~~~~~~~~i~~qi~~~L~~l~H~~g--iiHrDlkP~NIli~-~  153 (190)
T cd05147          83 CPEPILLK----SHVLVMEFIGDDGWAAPRL--KDAPLSESKARELYLQVIQIMRILYQDCR--LVHADLSEYNLLYH-D  153 (190)
T ss_pred             CCcEEEec----CCEEEEEEeCCCCCcchhh--hcCCCCHHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHHEEEE-C
Confidence            44333222    2379999999887765432  234688899999999999999999 6888  99999999999998 4


Q ss_pred             CceEecccCchhhh
Q 006019          514 YAAKLSDLSFWNEI  527 (664)
Q Consensus       514 ~~~kl~DfGla~~~  527 (664)
                      +.++|+|||++...
T Consensus       154 ~~v~LiDFG~a~~~  167 (190)
T cd05147         154 GKLYIIDVSQSVEH  167 (190)
T ss_pred             CcEEEEEccccccC
Confidence            78999999998754

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.80  E-value=5.1e-19  Score=170.80  Aligned_cols=144  Identities=14%  Similarity=0.085  Sum_probs=111.7

Q ss_pred             cccccCCCeEEEEEEECCCcEEEEEEeeecccCC---------------------CchhHHHHHHHHHHHHhccCCCccc
Q 006019          376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKD---------------------WPKNLEVQFRKKIDTLSKVNHKNFV  434 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~---------------------~~~~~~~~f~~E~~~l~~l~H~niv  434 (664)
                      ..||+|+||.||+|+..+|+.||||++.......                     ........+..|.+.+.+++|+++.
T Consensus         3 ~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~   82 (190)
T cd05145           3 GCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGVP   82 (190)
T ss_pred             ceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            5799999999999998789999999987653210                     0001122346899999999999886


Q ss_pred             ceEEEEecCCCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEEeCcCCCCeEecCC
Q 006019          435 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTED  513 (664)
Q Consensus       435 ~l~g~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~-~~~~ivHrDLk~~NILld~~  513 (664)
                      ....+....    .++||||++++++.....  ....++.....+++.+++.++.|+|+ .+  |+||||||+|||++ +
T Consensus        83 ~p~~~~~~~----~~lVmE~~~g~~~~~~~l--~~~~~~~~~~~~i~~~l~~~l~~lH~~~g--ivHrDlkP~NIll~-~  153 (190)
T cd05145          83 VPEPILLKK----NVLVMEFIGDDGSPAPRL--KDVPLEEEEAEELYEQVVEQMRRLYQEAG--LVHGDLSEYNILYH-D  153 (190)
T ss_pred             CceEEEecC----CEEEEEEecCCCchhhhh--hhccCCHHHHHHHHHHHHHHHHHHHHhCC--EecCCCChhhEEEE-C
Confidence            555444332    379999999886543321  22457778889999999999999998 88  99999999999999 8


Q ss_pred             CceEecccCchhhhh
Q 006019          514 YAAKLSDLSFWNEIA  528 (664)
Q Consensus       514 ~~~kl~DfGla~~~~  528 (664)
                      +.++|+|||+++...
T Consensus       154 ~~~~liDFG~a~~~~  168 (190)
T cd05145         154 GKPYIIDVSQAVELD  168 (190)
T ss_pred             CCEEEEEcccceecC
Confidence            999999999987654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PLN03150 hypothetical protein; Provisional

Probab=99.80  E-value=5.6e-19  Score=199.72  Aligned_cols=145  Identities=32%  Similarity=0.531  Sum_probs=114.1

Q ss_pred             chHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCC-----ccceeEecC------CcEEEEEeCCCCccccccccccCC
Q 006019           28 LNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPC-----SWFGVECSD------GKVVNLNLKDLCLEGTLAPEIQSL   96 (664)
Q Consensus        28 ~~~~~~all~~k~~~~~~~~~~l~~W~~~~~~~~~C-----~w~gv~C~~------~~v~~l~L~~~~l~g~ip~~~~~l   96 (664)
                      ..+|..||+++|+++. ++.  ..+|+     .++|     .|.||.|+.      ..|+.|+|++|+|.|.+|+++++|
T Consensus       370 ~~~~~~aL~~~k~~~~-~~~--~~~W~-----g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L  441 (623)
T PLN03150        370 LLEEVSALQTLKSSLG-LPL--RFGWN-----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKL  441 (623)
T ss_pred             CchHHHHHHHHHHhcC-Ccc--cCCCC-----CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCC
Confidence            5678999999999875 342  24796     2345     799999952      148888888888888888888888


Q ss_pred             CCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecccCcccccCCccccCC-CCCCEee
Q 006019           97 THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKL-QVLSESQ  175 (664)
Q Consensus        97 ~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l-~~L~~l~  175 (664)
                      ++|+.|+|++|.|.|.+|..++.+++|+.|+|++|+|+|.+|..++++++|+.|+|++|+|+|.+|..++.+ .++..++
T Consensus       442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~  521 (623)
T PLN03150        442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN  521 (623)
T ss_pred             CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEE
Confidence            888888888888888888888888888888888888888888888888888888888888888888877653 3445555


Q ss_pred             CCCCc
Q 006019          176 VDEGQ  180 (664)
Q Consensus       176 l~~n~  180 (664)
                      +++|.
T Consensus       522 ~~~N~  526 (623)
T PLN03150        522 FTDNA  526 (623)
T ss_pred             ecCCc
Confidence            55553

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.79  E-value=9.3e-18  Score=174.87  Aligned_cols=247  Identities=21%  Similarity=0.287  Sum_probs=181.7

Q ss_pred             hcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCC-cccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK-NFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~-niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      ...||.|+||.||++...  ..+++|.+.......  ......|.+|+.+++.+.|+ +++++..++....  ..++++|
T Consensus         5 ~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~--~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~   78 (384)
T COG0515           5 LRKLGEGSFGEVYLARDR--KLVALKVLAKKLESK--SKEVERFLREIQILASLNHPPNIVKLYDFFQDEG--SLYLVME   78 (384)
T ss_pred             EEeecCCCCeEEEEEEec--cEEEEEeechhhccc--hhHHHHHHHHHHHHHHccCCcceeeEEEEEecCC--EEEEEEe
Confidence            467999999999999976  778888886544332  12467899999999999988 7999999996555  4689999


Q ss_pred             ecCCCChhhhhcccCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC-ceEecccCchhhhhhh-
Q 006019          454 YAPNGTLFEHIHIKES-EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY-AAKLSDLSFWNEIAMA-  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~-~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~-~~kl~DfGla~~~~~~-  530 (664)
                      |+.++++.+++..... ..+.......+..+++.++.|+|+.+  ++|||+||+||+++... .++++|||+++..... 
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~~--~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~  156 (384)
T COG0515          79 YVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKG--IIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPG  156 (384)
T ss_pred             cCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhCC--eeccCCCHHHeeecCCCCeEEEeccCcceecCCCC
Confidence            9999999976653221 26888899999999999999999999  99999999999999988 7999999998744321 


Q ss_pred             --------------hhhcccccccCC---CCCCcCCcchhhHHHHHHHHhCCCCccCCCCC--hHHHHHHHhcCCCC-Cc
Q 006019          531 --------------EMAATSKKLSSA---PSASLESNVYNFGVLLFEMVTGRLPYLVDNGS--LEDWAADYLSGVQP-LQ  590 (664)
Q Consensus       531 --------------~~~~~~pe~~~~---~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~--~~~~~~~~~~~~~~-~~  590 (664)
                                    ...+.+||....   ...+...|+||+|++++++++|+.|+......  ..+........... ..
T Consensus       157 ~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (384)
T COG0515         157 STSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPSLA  236 (384)
T ss_pred             ccccccccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCccccHHHHHHHHHhcCCcccc
Confidence                          122345666555   57788999999999999999999997433321  11211111111111 00


Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          591 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       591 ~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      ......   ........+.+++..|+..+|..|.++.+....
T Consensus       237 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  275 (384)
T COG0515         237 SPLSPS---NPELISKAASDLLKKLLAKDPKNRLSSSSDLSH  275 (384)
T ss_pred             cccCcc---ccchhhHHHHHHHHHHHhcCchhcCCHHHHhhc
Confidence            000000   002223467899999999999999999887764

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.78  E-value=5.8e-18  Score=177.48  Aligned_cols=248  Identities=16%  Similarity=0.211  Sum_probs=173.9

Q ss_pred             hhcccccCCCeEEEEEEECCC--cEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCC----CcccceEEEEe-cCCCc
Q 006019          374 FSNVIGSSPIGTVYKGTLSNG--VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH----KNFVNLIGFCE-EEEPF  446 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~--~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H----~niv~l~g~~~-~~~~~  446 (664)
                      +.+.||+|+||.||++.....  ..+|+|.........     ...+..|+.++..+.+    +++..++.... ...  
T Consensus        22 i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~-----~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~--   94 (322)
T KOG1164|consen   22 LGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSK-----PSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTED--   94 (322)
T ss_pred             EeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCC-----CccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCc--
Confidence            457899999999999996553  477887765543222     1157788888888873    57888887774 444  


Q ss_pred             eeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCC-----CceEeccc
Q 006019          447 TRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED-----YAAKLSDL  521 (664)
Q Consensus       447 ~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~-----~~~kl~Df  521 (664)
                      ..++||+.+ +-+|.++........++-.+.++|+.|+..+|++||+.+  ++||||||.|++++..     ..+.+.||
T Consensus        95 ~~~iVM~l~-G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~G--~iHRDiKp~N~~~g~~~~~~~~~~~llDf  171 (322)
T KOG1164|consen   95 FNFIVMSLL-GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSKG--FIHRDIKPENFVVGQSSRSEVRTLYLLDF  171 (322)
T ss_pred             eeEEEEecc-CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhcC--cccCCcCHHHeeecCCCCcccceEEEEec
Confidence            568999977 779999775444578999999999999999999999999  9999999999999865     46899999


Q ss_pred             Cchh--hhhhhhh-----------------hcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCC-hHHHHHH
Q 006019          522 SFWN--EIAMAEM-----------------AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGS-LEDWAAD  581 (664)
Q Consensus       522 Gla~--~~~~~~~-----------------~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~-~~~~~~~  581 (664)
                      |+++  .......                 .+.+.......+.+.+.|+||++.++.|++.|..||...... ...-...
T Consensus       172 Glar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~~~~~~~~~~~  251 (322)
T KOG1164|consen  172 GLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALEMTDLKSKFEK  251 (322)
T ss_pred             CCCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCccccccchHHHHHH
Confidence            9998  3211110                 011111223445678899999999999999999998432211 1111111


Q ss_pred             HhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCC
Q 006019          582 YLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  640 (664)
Q Consensus       582 ~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~  640 (664)
                      .... .    ....    .....+.++.+++..+-..+..++|....+...|++.....
T Consensus       252 ~~~~-~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Pdy~~~~~~l~~~~~~~  301 (322)
T KOG1164|consen  252 DPRK-L----LTDR----FGDLKPEEFAKILEYIDSLDYEDKPDYEKLAELLKDVFDSE  301 (322)
T ss_pred             Hhhh-h----cccc----ccCCChHHHHHHHHHhhccCCcCCCCHHHHHHHHHHHHHhc
Confidence            1110 0    0000    11222345666666677789999999999999998876653

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.77  E-value=7.8e-19  Score=170.94  Aligned_cols=169  Identities=12%  Similarity=0.120  Sum_probs=125.3

Q ss_pred             hcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHH------HHHHHHHHHhccCCCcccceEEEEecCC----
Q 006019          375 SNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEV------QFRKKIDTLSKVNHKNFVNLIGFCEEEE----  444 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~------~f~~E~~~l~~l~H~niv~l~g~~~~~~----  444 (664)
                      .+++|.|+||.||.... ++..+++|.+.......  +....      .|.+|+..+.+++|++|.....++....    
T Consensus        36 ~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~--~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~~~~~~  112 (232)
T PRK10359         36 IKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRT--ERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLAERKTL  112 (232)
T ss_pred             EEEecCCCceEEEEEec-CCCcEEEEEechhcCch--HHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeecccccc
Confidence            48899999999999765 56789999986544322  11212      2689999999999999999988855322    


Q ss_pred             --CceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccC
Q 006019          445 --PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLS  522 (664)
Q Consensus       445 --~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfG  522 (664)
                        ....+|||||+++.+|.++..      ++.    ....+++.++..+|+.+  ++|||+||+||+++.++ ++++|||
T Consensus       113 ~~~~~~~lvmEyi~G~tL~~~~~------~~~----~~~~~i~~~l~~lH~~g--i~H~Dikp~Nili~~~g-i~liDfg  179 (232)
T PRK10359        113 RYAHTYIMLIEYIEGVELNDMPE------ISE----DVKAKIKASIESLHQHG--MVSGDPHKGNFIVSKNG-LRIIDLS  179 (232)
T ss_pred             cccCCeEEEEEEECCccHHHhhh------ccH----HHHHHHHHHHHHHHHcC--CccCCCChHHEEEeCCC-EEEEECC
Confidence              014689999999999987632      222    24568999999999999  99999999999999988 9999999


Q ss_pred             chhhhhhhhhhcccccccCCCCCCcCCcchhhHHHHHHHH
Q 006019          523 FWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMV  562 (664)
Q Consensus       523 la~~~~~~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~  562 (664)
                      ..+......   ....+.....+..++|+|||||.+.-+.
T Consensus       180 ~~~~~~e~~---a~d~~vler~y~~~~di~~lg~~~~~~~  216 (232)
T PRK10359        180 GKRCTAQRK---AKDRIDLERHYGIKNEIKDLGYYLLIYK  216 (232)
T ss_pred             Ccccccchh---hHHHHHHHhHhcccccccceeEeehHHH
Confidence            876552111   1111223333556899999999887654

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.73  E-value=2.4e-17  Score=154.91  Aligned_cols=246  Identities=14%  Similarity=0.189  Sum_probs=171.5

Q ss_pred             hhcccccCCCeEEEEEE-ECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCC-CcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH-KNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H-~niv~l~g~~~~~~~~~~~lV  451 (664)
                      ..+.||.|+||.+|.|. ..+|.+||||.-......       .+..-|.++.+.++| ..|..+.-|..+..  ...+|
T Consensus        19 lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~h-------pqL~yEskvY~iL~~g~GiP~i~~y~~e~~--ynvlV   89 (341)
T KOG1163|consen   19 LVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAKH-------PQLLYESKVYRILQGGVGIPHIRHYGTEKD--YNVLV   89 (341)
T ss_pred             EEEeecCCchhheeeeeeccCCceEEEEeecccCCC-------cchhHHHHHHHHhccCCCCchhhhhccccc--cceee
Confidence            44789999999999999 678999999976443322       356788999999976 56666777777666  56899


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCC---CceEecccCchhhhh
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED---YAAKLSDLSFWNEIA  528 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~---~~~kl~DfGla~~~~  528 (664)
                      ||.+ +-+|.++..- -...++..+.+-+|-|+..-++|+|..+  ++||||||.|+|..-+   ..+.++|||+++...
T Consensus        90 MdLL-GPsLEdLfnf-C~R~ftmkTvLMLaDQml~RiEyvH~r~--fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~  165 (341)
T KOG1163|consen   90 MDLL-GPSLEDLFNF-CSRRFTMKTVLMLADQMLSRIEYVHLRN--FIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYR  165 (341)
T ss_pred             eecc-CccHHHHHHH-HhhhhhHHhHHHHHHHHHHHHHHHHhhc--cccccCCccceeeccccccceEEEEeccchhhhc
Confidence            9988 6799887642 3456888899999999999999999988  9999999999999744   467899999999874


Q ss_pred             hhhhhcccc-----------ccc-----CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccc
Q 006019          529 MAEMAATSK-----------KLS-----SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQF  592 (664)
Q Consensus       529 ~~~~~~~~p-----------e~~-----~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~  592 (664)
                      ......--|           .|.     .+.+-+.+.|+=|.|.||.++--|..||.+-...-.......+.+. .+.  
T Consensus       166 d~~t~~HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQglka~tk~QKyEkI~Ek-K~s--  242 (341)
T KOG1163|consen  166 DIRTRQHIPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGLKAATKKQKYEKISEK-KMS--  242 (341)
T ss_pred             cccccccCccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCcccccchhhHHHHHHHHHHh-hcC--
Confidence            322111000           011     1122366789999999999999999999533222111111111110 000  


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhh
Q 006019          593 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  637 (664)
Q Consensus       593 ~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~  637 (664)
                        -.+...+...+.++.-.+..|-..--++-|...-+.+.++-+.
T Consensus       243 --~~ie~LC~G~P~EF~myl~Y~R~L~F~E~Pdy~ylrqlFriLf  285 (341)
T KOG1163|consen  243 --TPIEVLCKGFPAEFAMYLNYCRGLGFEEKPDYMYLRQLFRILF  285 (341)
T ss_pred             --CCHHHHhCCCcHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHH
Confidence              0000112223456777888898888888898887777776554

>PRK10345 hypothetical protein; Provisional

Probab=99.72  E-value=3.7e-17  Score=158.78  Aligned_cols=135  Identities=10%  Similarity=0.066  Sum_probs=101.7

Q ss_pred             cccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-----CCCcccceEEEEecCCC-ce-e
Q 006019          376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-----NHKNFVNLIGFCEEEEP-FT-R  448 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-----~H~niv~l~g~~~~~~~-~~-~  448 (664)
                      +.||+|+||.||.  .+.....+||++.....     ...+++.+|+++++++     .||||++++|++.++.. .. .
T Consensus         8 ~~LG~G~~~~Vy~--hp~~~~k~IKv~~~~~~-----~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~   80 (210)
T PRK10345          8 SPLGTGRHRKCYA--HPEDAQRCIKIVYHRGD-----GGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVY   80 (210)
T ss_pred             ceecCCCceEEEE--CCCCcCeEEEEEecccc-----chHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEE
Confidence            6799999999996  43323336887754322     1346799999999999     57999999999987531 12 2


Q ss_pred             EEEEEe--cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHH-HHhhcCCCCeEEeCcCCCCeEecC----CCceEeccc
Q 006019          449 MMVFEY--APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCL-EHMHQLNPPIAHNYLNSSAVHLTE----DYAAKLSDL  521 (664)
Q Consensus       449 ~lV~Ey--~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL-~yLH~~~~~ivHrDLk~~NILld~----~~~~kl~Df  521 (664)
                      .+|+||  +++|+|.+++...   .++..  ..++.+++.++ +|||+.+  |+||||||+|||++.    +..++|+||
T Consensus        81 ~~I~e~~G~~~~tL~~~l~~~---~~~e~--~~~~~~~L~~l~~yLh~~~--IvhrDlKp~NILl~~~~~~~~~~~LiDg  153 (210)
T PRK10345         81 DVIADFDGKPSITLTEFAEQC---RYEED--VAQLRQLLKKLKRYLLDNR--IVTMELKPQNILCQRISESEVIPVVCDN  153 (210)
T ss_pred             EEEecCCCCcchhHHHHHHcc---cccHh--HHHHHHHHHHHHHHHHHCC--EeecCCCHHHEEEeccCCCCCcEEEEEC
Confidence            378999  6689999999532   35554  34567777777 9999999  999999999999974    348999995


Q ss_pred             Cch
Q 006019          522 SFW  524 (664)
Q Consensus       522 Gla  524 (664)
                      +.+
T Consensus       154 ~G~  156 (210)
T PRK10345        154 IGE  156 (210)
T ss_pred             CCC
Confidence            443

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=2.4e-18  Score=191.78  Aligned_cols=247  Identities=16%  Similarity=0.180  Sum_probs=167.2

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecc-cCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVAS-AKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~-~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      ..+.+|.|++|.|+..... .....+.|...... ..+........+..|.-+-.+++|+|++..+..+.+..  ...-+
T Consensus       322 ~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~--~~~~~  399 (601)
T KOG0590|consen  322 PGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEID--GILQS  399 (601)
T ss_pred             ccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcc--cchhh
Confidence            3478999999977777632 33334444433210 11111122223667888888899999988776666544  22344


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh-
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  530 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~-  530 (664)
                      ||||++ +|+.++..  ...+....+..+..|+..|+.|+|+.+  +.|||+|++|++++.++.+||+|||.+...... 
T Consensus       400 mE~~~~-Dlf~~~~~--~~~~~~~e~~c~fKqL~~Gv~y~h~~G--iahrdlK~enll~~~~g~lki~Dfg~~~vf~~~~  474 (601)
T KOG0590|consen  400 MEYCPY-DLFSLVMS--NGKLTPLEADCFFKQLLRGVKYLHSMG--LAHRDLKLENLLVTENGILKIIDFGAASVFRYPW  474 (601)
T ss_pred             hhcccH-HHHHHHhc--ccccchhhhhHHHHHHHHHHHHHHhcC--ceeccCccccEEEecCCceEEeecCcceeeccCc
Confidence            999999 99998853  235777788889999999999999999  999999999999999999999999987655322 


Q ss_pred             ------------hhhcccccccCCCCCC-cCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 006019          531 ------------EMAATSKKLSSAPSAS-LESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  597 (664)
Q Consensus       531 ------------~~~~~~pe~~~~~~~s-~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  597 (664)
                                  ...+.+||.....++. ...||||.||++..|++|+.||........+.  .....  ....-+....
T Consensus       475 e~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~~--~~~~~--~~~~~~~~~~  550 (601)
T KOG0590|consen  475 EKNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDNSF--KTNNY--SDQRNIFEGP  550 (601)
T ss_pred             chhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCccccccccccch--hhhcc--ccccccccCh
Confidence                        1233457776666654 45899999999999999999995322211111  00000  0000000011


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          598 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       598 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ...-...+.+...++.+.++.+|.+|-++++|++
T Consensus       551 ~~~~~~lp~~~~~~~~~~l~~~P~~R~ti~~i~~  584 (601)
T KOG0590|consen  551 NRLLSLLPRETRIIIYRMLQLDPTKRITIEQILN  584 (601)
T ss_pred             HHHHHhchhhHHHHHHHHccCChhheecHHHHhh
Confidence            1112334456778999999999999999999886

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.71  E-value=2e-18  Score=191.85  Aligned_cols=233  Identities=19%  Similarity=0.287  Sum_probs=167.3

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHH--HhccCCCcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDT--LSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~--l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.+.+|++.|=+|.+|+.+.|. |+||++......-    ..+.|.++++-  ....+|||.+++.-.-....  ..|||
T Consensus        27 ~~~~LGstRFlKv~r~k~~eG~-vVvKVFvk~~p~~----sL~~~~qrL~~ik~~l~~~pn~lPfqk~~~t~k--AAylv   99 (1431)
T KOG1240|consen   27 YVENLGSTRFLKVARAKDREGL-VVVKVFVKQDPTI----SLRPFKQRLEEIKFALMKAPNCLPFQKVLVTDK--AAYLV   99 (1431)
T ss_pred             eecccCchhhhhhhhccCCCce-EEEEEEeccCCCC----CchHHHHHHHHHHHHhhcCCcccchHHHHHhhH--HHHHH
Confidence            3477999999999999998887 8888886543221    23445444443  44568999998865544433  46889


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh--
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM--  529 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~--  529 (664)
                      -+|..+ +|+|.+.  ...-|.......||.|+..|+.-+|..+  |+|||||.+|||+++-.-+.|+||.-.|...-  
T Consensus       100 Rqyvkh-nLyDRlS--TRPFL~~iEKkWiaFQLL~al~qcH~~g--VcHGDIKsENILiTSWNW~~LtDFAsFKPtYLPe  174 (1431)
T KOG1240|consen  100 RQYVKH-NLYDRLS--TRPFLVLIEKKWIAFQLLKALSQCHKLG--VCHGDIKSENILITSWNWLYLTDFASFKPTYLPE  174 (1431)
T ss_pred             HHHHhh-hhhhhhc--cchHHHHHHHHHHHHHHHHHHHHHHHcC--ccccccccceEEEeeechhhhhcccccCCccCCC
Confidence            999976 9999885  4455777788899999999999999999  99999999999999999999999976554321  


Q ss_pred             --------------hhhhcccccccC-----------CCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHh
Q 006019          530 --------------AEMAATSKKLSS-----------APSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYL  583 (664)
Q Consensus       530 --------------~~~~~~~pe~~~-----------~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~  583 (664)
                                    ....+-+||.+.           .+..+++.||||.|||+.||++ |++||.     +.+... +.
T Consensus       175 DNPadf~fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~-----LSQL~a-Yr  248 (1431)
T KOG1240|consen  175 DNPADFTFFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFT-----LSQLLA-YR  248 (1431)
T ss_pred             CCcccceEEEecCCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCccc-----HHHHHh-Hh
Confidence                          112233555332           1226788999999999999999 888882     222211 11


Q ss_pred             cCCCC-----CccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHh
Q 006019          584 SGVQP-----LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  635 (664)
Q Consensus       584 ~~~~~-----~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~  635 (664)
                      .+...     +.++.|           ..+++++..+++.||++|-++++.++.-+.
T Consensus       249 ~~~~~~~e~~Le~Ied-----------~~~Rnlil~Mi~rdPs~RlSAedyL~~yrG  294 (1431)
T KOG1240|consen  249 SGNADDPEQLLEKIED-----------VSLRNLILSMIQRDPSKRLSAEDYLQKYRG  294 (1431)
T ss_pred             ccCccCHHHHHHhCcC-----------ccHHHHHHHHHccCchhccCHHHHHHhhhc
Confidence            11010     111112           147799999999999999999999988544

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.70  E-value=1.1e-16  Score=157.29  Aligned_cols=139  Identities=15%  Similarity=0.189  Sum_probs=111.9

Q ss_pred             cccccCCCeEEEEEEECCCcEEEEEEeeecccCCC---chhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDW---PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.||+|++|.||+|.+ .|..+++|+.........   .......+.+|++++..++|+++.....++...+  ..++||
T Consensus         2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~--~~~lv~   78 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPE--NFIIVM   78 (211)
T ss_pred             cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCC--CCEEEE
Confidence            4699999999999998 667788887653322110   0112346889999999999999888777766555  558999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhh
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  526 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~  526 (664)
                      ||+++++|.+++...     .+ .+..++.+++.++.++|+.+  ++|||++|.|||++ ++.++|+|||.++.
T Consensus        79 e~~~G~~L~~~~~~~-----~~-~~~~i~~~i~~~l~~lH~~~--i~H~Dl~p~Nil~~-~~~~~liDf~~a~~  143 (211)
T PRK14879         79 EYIEGEPLKDLINSN-----GM-EELELSREIGRLVGKLHSAG--IIHGDLTTSNMILS-GGKIYLIDFGLAEF  143 (211)
T ss_pred             EEeCCcCHHHHHHhc-----cH-HHHHHHHHHHHHHHHHHhCC--cccCCCCcccEEEE-CCCEEEEECCcccC
Confidence            999999999988532     12 78899999999999999998  99999999999999 88999999998664

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.70  E-value=9.1e-17  Score=153.12  Aligned_cols=174  Identities=15%  Similarity=0.150  Sum_probs=125.1

Q ss_pred             cccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchh-HHHHHHHHHHHHhccC-CCcccceEEEEecCCCceeEEEEE
Q 006019          376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKN-LEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~-~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      ..|++|+||+||.+.- .+..++.+.+.....  +... ....|.+|+++|++++ |+++++++++    +  ..+++||
T Consensus         8 ~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~--~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~--~~~lvme   78 (218)
T PRK12274          8 EPLKSDTFGRILLVRG-GERKFVRRDLSAAPW--WLRGVAWWLARREALALRQLDGLPRTPRLLHW----D--GRHLDRS   78 (218)
T ss_pred             eeecCCCcceEEEeec-CCceeeecccccchh--hhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----c--CEEEEEe
Confidence            5799999999997765 566777666543221  1111 1235889999999995 5889999886    2  3589999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCc-CCCCeEecCCCceEecccCchhhhhhhhh
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYL-NSSAVHLTEDYAAKLSDLSFWNEIAMAEM  532 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDL-k~~NILld~~~~~kl~DfGla~~~~~~~~  532 (664)
                      |+++.+|...+..         ....+..+++++++++|+.+  |+|||| ||.|||++.++.++|+|||++........
T Consensus        79 yI~G~~L~~~~~~---------~~~~~~~qi~~~L~~lH~~G--IvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~~~~~  147 (218)
T PRK12274         79 YLAGAAMYQRPPR---------GDLAYFRAARRLLQQLHRCG--VAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNPRAR  147 (218)
T ss_pred             eecCccHHhhhhh---------hhHHHHHHHHHHHHHHHHCc--CccCCCCCcceEEEcCCCCEEEEECCCceecCCcch
Confidence            9999998754321         11346788999999999999  999999 79999999999999999999874432110


Q ss_pred             -----h------------cccccccCCC------CCC-cCCcchhhHHHHHHHHhCCCCcc
Q 006019          533 -----A------------ATSKKLSSAP------SAS-LESNVYNFGVLLFEMVTGRLPYL  569 (664)
Q Consensus       533 -----~------------~~~pe~~~~~------~~s-~ksDVySfGvvl~El~tG~~P~~  569 (664)
                           .            ..+|++....      ..+ ...+.++-|.-+|.++||+.+..
T Consensus       148 ~~r~L~~rDl~~llk~~~~y~~~~l~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~~  208 (218)
T PRK12274        148 WMRLLAREDLRHLLKHKRMYCPAALTPVERRVLKRTSWIRELWFATGKPVYRFVTRRVLHW  208 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhhccchhHHHHHHHhcchHHHHHhccCCcc
Confidence                 0            0122222111      111 34588999999999999998874

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.69  E-value=3.1e-16  Score=153.93  Aligned_cols=246  Identities=13%  Similarity=0.173  Sum_probs=168.8

Q ss_pred             hcccccCCCeEEEEEE-ECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcccceEEEEecCCCceeEEEE
Q 006019          375 SNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~-~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      .++||+|.||.++.|+ +-++..||||.-..+..       ..++..|....+.+. .++|...+-|-.++.  +..||+
T Consensus        33 GkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS~-------APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~--~NiLVi  103 (449)
T KOG1165|consen   33 GKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKSE-------APQLRDEYRTYKLLGGTEGIPQVYYFGQEGK--YNILVI  103 (449)
T ss_pred             ccccccCcceeeecccccccCceEEEEeccccCC-------cchHHHHHHHHHHHcCCCCCCceeeeccccc--hhhhhh
Confidence            4789999999999999 66899999986543322       235666777777764 577777765555544  558999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCC-----CceEecccCchhhh
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED-----YAAKLSDLSFWNEI  527 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~-----~~~kl~DfGla~~~  527 (664)
                      |.+ +-||.|+.. -.+..++..+.+.||.|+..-++|+|+++  +|.|||||+|+||..-     ..+.|.|||+|+.+
T Consensus       104 dLL-GPSLEDLFD-~CgR~FSvKTV~miA~Qmi~rie~vH~k~--LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~Y  179 (449)
T KOG1165|consen  104 DLL-GPSLEDLFD-LCGRRFSVKTVAMIAKQMITRIEYVHEKD--LIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEY  179 (449)
T ss_pred             hhh-CcCHHHHHH-HhcCcccHHhHHHHHHHHHHHHHHHHhcc--eeecccCccceeecCCCCCCCceEEEEeccchhhh
Confidence            988 668887664 34567999999999999999999999999  9999999999999844     46899999999987


Q ss_pred             hhhhh----hc--------cc----ccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCcc
Q 006019          528 AMAEM----AA--------TS----KKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQ  591 (664)
Q Consensus       528 ~~~~~----~~--------~~----pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~  591 (664)
                      .....    .+        ++    -.-..+.+-+.+.|+=|+|-|+.+.+-|..||.+-...-.......+-+......
T Consensus       180 rDp~TkqHIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGLKA~tnK~kYeKIGe~Kr~T~  259 (449)
T KOG1165|consen  180 RDPKTKQHIPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKADTNKEKYEKIGETKRSTP  259 (449)
T ss_pred             cCccccccCccccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCccccccCcchHHHHHHhccccccCC
Confidence            43221    11        11    1111244557788999999999999999999954322211111111111110000


Q ss_pred             ccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          592 FVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       592 ~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                           +....+..++++..-+.---..+-++-|..+-+...+.++++
T Consensus       260 -----i~~Lc~g~P~efa~Yl~yvR~L~F~E~PDYdylr~Lf~dvld  301 (449)
T KOG1165|consen  260 -----IEVLCEGFPEEFATYLRYVRRLDFFETPDYDYLRKLFDDVLD  301 (449)
T ss_pred             -----HHHHHhcCHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHH
Confidence                 011223344556666655555667778988888888777764

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.68  E-value=2.7e-16  Score=157.78  Aligned_cols=227  Identities=20%  Similarity=0.319  Sum_probs=142.1

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCC-----------CcccceEEEEec
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH-----------KNFVNLIGFCEE  442 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H-----------~niv~l~g~~~~  442 (664)
                      .+.||.|+++.||.++.. +++.+|||+.....  +......+++.+|.-....+.+           .-++.+--.-..
T Consensus        17 ~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~--~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~i~   94 (288)
T PF14531_consen   17 GRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPA--DASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLRIP   94 (288)
T ss_dssp             EEEEEEETTEEEEEEEETTTTEEEEEEEEEESS--TTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEEET
T ss_pred             ccccccCCceEEEEEEEccCCceEEEEEEeccc--ccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEEEc
Confidence            368999999999999975 48999999988766  2334456778888776666443           222222111111


Q ss_pred             CCC-----------c---eeEEEEEecCCCChhhhhcc---cC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCc
Q 006019          443 EEP-----------F---TRMMVFEYAPNGTLFEHIHI---KE--SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYL  503 (664)
Q Consensus       443 ~~~-----------~---~~~lV~Ey~~~GsL~~~l~~---~~--~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDL  503 (664)
                      +.+           +   ..+++|+-+ .++|.+++..   ..  ...+....|+.+..|+.+.+++||+.+  +||+||
T Consensus        95 ~~~~~~~~~~~~~~~~v~n~~~l~P~~-~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~G--lVHgdi  171 (288)
T PF14531_consen   95 GKPPFFERGPGQSIYWVLNRFLLMPRA-QGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSYG--LVHGDI  171 (288)
T ss_dssp             TS-SEEEECETTEEEEEESEEEEEE---SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTT--EEEST-
T ss_pred             CCCcceecCCCCccceeehhhhccchh-hhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhcc--eEeccc
Confidence            110           1   236677777 5688877531   11  223555677888899999999999999  999999


Q ss_pred             CCCCeEecCCCceEecccCchhhhhh------hhhhcccccccC--------CCCCCcCCcchhhHHHHHHHHhCCCCcc
Q 006019          504 NSSAVHLTEDYAAKLSDLSFWNEIAM------AEMAATSKKLSS--------APSASLESNVYNFGVLLFEMVTGRLPYL  569 (664)
Q Consensus       504 k~~NILld~~~~~kl~DfGla~~~~~------~~~~~~~pe~~~--------~~~~s~ksDVySfGvvl~El~tG~~P~~  569 (664)
                      ||+|++++.+|.++|+||+.....+.      ......+||...        .-.++.+.|.|++|+++|.|++|+.||.
T Consensus       172 ~~~nfll~~~G~v~Lg~F~~~~r~g~~~~~~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~  251 (288)
T PF14531_consen  172 KPENFLLDQDGGVFLGDFSSLVRAGTRYRCSEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWCGRLPFG  251 (288)
T ss_dssp             SGGGEEE-TTS-EEE--GGGEEETTEEEEGGGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-STC
T ss_pred             ceeeEEEcCCCCEEEcChHHHeecCceeeccCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHHccCCCC
Confidence            99999999999999999986544321      112233344321        1236888999999999999999999994


Q ss_pred             CCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCC
Q 006019          570 VDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKR  623 (664)
Q Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~R  623 (664)
                      ....             ....   +..+.... +.++.+..|+...++.+|++|
T Consensus       252 ~~~~-------------~~~~---~~~f~~C~-~~Pe~v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  252 LSSP-------------EADP---EWDFSRCR-DMPEPVQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             CCGG-------------GSTS---GGGGTTSS----HHHHHHHHHHT-SSGGGS
T ss_pred             CCCc-------------cccc---cccchhcC-CcCHHHHHHHHHHccCCcccC
Confidence            2110             0000   00222233 667789999999999999988

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.68  E-value=2.7e-16  Score=153.08  Aligned_cols=136  Identities=15%  Similarity=0.203  Sum_probs=105.9

Q ss_pred             ccccCCCeEEEEEEECCCcEEEEEEeeecccCCC---chhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          377 VIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDW---PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       377 ~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .||+|+||.||+|.+ ++..+++|..........   .......+.+|++++..++|+++.....++...+  ..++|||
T Consensus         1 ~ig~G~~~~vy~~~~-~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~--~~~lv~e   77 (199)
T TIGR03724         1 LIAKGAEAIIYLGDF-LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPD--NKTIVME   77 (199)
T ss_pred             CCCCCceEEEEEeec-CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC--CCEEEEE
Confidence            489999999999996 567888888653321110   0112356789999999999987665555555444  4589999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhh
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~  527 (664)
                      |+++++|.+++....         ..++.+++.+|++||+.+  ++|||++|.||+++ ++.+++.|||+++..
T Consensus        78 ~~~g~~l~~~~~~~~---------~~~~~~i~~~l~~lH~~g--i~H~Dl~~~Nil~~-~~~~~liDfg~a~~~  139 (199)
T TIGR03724        78 YIEGKPLKDVIEEGN---------DELLREIGRLVGKLHKAG--IVHGDLTTSNIIVR-DDKLYLIDFGLGKYS  139 (199)
T ss_pred             EECCccHHHHHhhcH---------HHHHHHHHHHHHHHHHCC--eecCCCCcceEEEE-CCcEEEEECCCCcCC
Confidence            999999998874321         078999999999999998  99999999999999 899999999987653

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.68  E-value=1.9e-16  Score=177.29  Aligned_cols=137  Identities=15%  Similarity=0.154  Sum_probs=108.8

Q ss_pred             hcccccCCCeEEEEEEECCCcEEEEEEeeecccCC---CchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          375 SNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKD---WPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~---~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      .+.||+|+||.||+|.+.+.. +++|+........   ......+.+.+|++++++++|++++....++...+  ..++|
T Consensus       338 ~~~iG~G~~g~Vy~~~~~~~~-~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~--~~~lv  414 (535)
T PRK09605        338 DHLIGKGAEADIKKGEYLGRD-AVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPE--EKTIV  414 (535)
T ss_pred             cceeccCCcEEEEEEeecCcc-ceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCC--CCEEE
Confidence            478999999999999986544 4444332211111   01122356899999999999999998887777655  45899


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhh
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~  527 (664)
                      |||+++++|.+++.          .+.+++.+++++|.|||+.+  ++|||+||+|||+ +++.++|+|||+++..
T Consensus       415 ~E~~~g~~L~~~l~----------~~~~~~~~i~~~L~~lH~~g--iiHrDlkp~NILl-~~~~~~liDFGla~~~  477 (535)
T PRK09605        415 MEYIGGKDLKDVLE----------GNPELVRKVGEIVAKLHKAG--IVHGDLTTSNFIV-RDDRLYLIDFGLGKYS  477 (535)
T ss_pred             EEecCCCcHHHHHH----------HHHHHHHHHHHHHHHHHhCC--CccCCCChHHEEE-ECCcEEEEeCcccccC
Confidence            99999999998874          45779999999999999998  9999999999999 6789999999998754

>smart00090 RIO RIO-like kinase

Probab=99.67  E-value=5.4e-16  Score=154.40  Aligned_cols=144  Identities=14%  Similarity=0.119  Sum_probs=108.3

Q ss_pred             hhcccccCCCeEEEEEE--ECCCcEEEEEEeeecccCC-------------------CchhHHHHHHHHHHHHhccCCCc
Q 006019          374 FSNVIGSSPIGTVYKGT--LSNGVEIAVASVSVASAKD-------------------WPKNLEVQFRKKIDTLSKVNHKN  432 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~--~~~~~~vavk~~~~~~~~~-------------------~~~~~~~~f~~E~~~l~~l~H~n  432 (664)
                      +.+.||+|+||.||+|.  ..+|..||+|.+.......                   ........+..|++.+.++.|..
T Consensus        32 i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~~~~  111 (237)
T smart00090       32 IGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLYEAG  111 (237)
T ss_pred             hCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            45789999999999998  5689999999987543210                   00012234678999999997643


Q ss_pred             --ccceEEEEecCCCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEe
Q 006019          433 --FVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL  510 (664)
Q Consensus       433 --iv~l~g~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILl  510 (664)
                        +.+.+++   .   ..++||||+++++|......  ...+.......++.+++.+++|||+.+ .++|||+||+||++
T Consensus       112 i~~p~~~~~---~---~~~lV~E~~~g~~L~~~~~~--~~~~~~~~~~~i~~qi~~~l~~LH~~g-~iiH~Dikp~NIli  182 (237)
T smart00090      112 VPVPKPIAW---R---RNVLVMEFIGGDGLPAPRLK--DVEPEEEEEFELYDDILEEMRKLYKEG-ELVHGDLSEYNILV  182 (237)
T ss_pred             CCCCeeeEe---c---CceEEEEEecCCcccccccc--cCCcchHHHHHHHHHHHHHHHHHHhcC-CEEeCCCChhhEEE
Confidence              3344443   1   23799999999888765421  233555567789999999999999875 39999999999999


Q ss_pred             cCCCceEecccCchhhh
Q 006019          511 TEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       511 d~~~~~kl~DfGla~~~  527 (664)
                      + ++.++|+|||.+...
T Consensus       183 ~-~~~i~LiDFg~a~~~  198 (237)
T smart00090      183 H-DGKVVIIDVSQSVEL  198 (237)
T ss_pred             E-CCCEEEEEChhhhcc
Confidence            9 889999999987654

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.67  E-value=3.1e-16  Score=152.50  Aligned_cols=138  Identities=14%  Similarity=0.153  Sum_probs=106.4

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCC-----------------CchhHHHHHHHHHHHHhccCCCc--cc
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKD-----------------WPKNLEVQFRKKIDTLSKVNHKN--FV  434 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~-----------------~~~~~~~~f~~E~~~l~~l~H~n--iv  434 (664)
                      +.+.||+|+||.||+|...+|+.+|||++.......                 +.......+..|..++.++.|++  +.
T Consensus        19 ~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~v~   98 (198)
T cd05144          19 LGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGFPVP   98 (198)
T ss_pred             cCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCCCCC
Confidence            457899999999999998889999999876432100                 00011234678899999998874  44


Q ss_pred             ceEEEEecCCCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC
Q 006019          435 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY  514 (664)
Q Consensus       435 ~l~g~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~  514 (664)
                      ..++.    .  ..++||||+++++|.+....        ....+++.+++.++.++|+.+  ++||||||+||++++++
T Consensus        99 ~~~~~----~--~~~lv~e~~~g~~L~~~~~~--------~~~~~~~~~i~~~l~~lh~~g--i~H~Dl~p~Nill~~~~  162 (198)
T cd05144          99 KPIDW----N--RHAVVMEYIDGVELYRVRVL--------EDPEEVLDEILEEIVKAYKHG--IIHGDLSEFNILVDDDE  162 (198)
T ss_pred             ceeec----C--CceEEEEEeCCcchhhcccc--------ccHHHHHHHHHHHHHHHHHCC--CCcCCCCcccEEEcCCC
Confidence            44442    2  34899999999999765421        234578899999999999988  99999999999999999


Q ss_pred             ceEecccCchhhh
Q 006019          515 AAKLSDLSFWNEI  527 (664)
Q Consensus       515 ~~kl~DfGla~~~  527 (664)
                      .++|+|||++...
T Consensus       163 ~~~liDfg~~~~~  175 (198)
T cd05144         163 KIYIIDWPQMVST  175 (198)
T ss_pred             cEEEEECCccccC
Confidence            9999999998654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.62  E-value=1.3e-16  Score=169.73  Aligned_cols=222  Identities=21%  Similarity=0.265  Sum_probs=164.3

Q ss_pred             ccccCCCeEEEEEE----ECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcccceEEEEecCCCceeEEE
Q 006019          377 VIGSSPIGTVYKGT----LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       377 ~iG~G~~G~Vy~g~----~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      .+|+|.||.|+..+    .+.|..+|.|.++.........   .....|..++..++ ||.+|++.-.+..+.  ..+++
T Consensus         1 vlg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~---~~t~~er~il~~~~~~~f~v~lhyafqt~~--kl~l~   75 (612)
T KOG0603|consen    1 VLGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDR---THTKQERIILAFVHNTPFLVKLHYAFQTDG--KLYLI   75 (612)
T ss_pred             CCCcCCCcchHHHHHhccccccchhhhhcccccccccccc---cccccHHHHHhhccCCCceeeeeeeecccc--chhHh
Confidence            37999999999754    3457778888776554433211   15667888888887 999999987777666  67899


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhhh
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE  531 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~~  531 (664)
                      .+|..+|+|...+.  .....+..........+|-+++++|+.+  ++|||+|++||+++.+|.+|+.|||+++..-...
T Consensus        76 ld~~rgg~lft~l~--~~~~f~~~~~~~~~aelaLald~lh~l~--iiyrd~k~enilld~~Ghi~~tdfglske~v~~~  151 (612)
T KOG0603|consen   76 LDFLRGGDLFTRLS--KEVMFDELDVAFYLAELALALDHLHKLG--IAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEK  151 (612)
T ss_pred             hhhcccchhhhccc--cCCchHHHHHHHHHHHHHHHHhhcchhH--HHHhcccccceeecccCccccCCchhhhHhHhhh
Confidence            99999999988774  4455666666667778889999999999  9999999999999999999999999999875433


Q ss_pred             -----hhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHH
Q 006019          532 -----MAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE  606 (664)
Q Consensus       532 -----~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  606 (664)
                           ..+.+||...  .....+|.|||||+++||+||..||..      +....++..           -..++.+...
T Consensus       152 ~~cgt~eymApEI~~--gh~~a~D~ws~gvl~felltg~~pf~~------~~~~~Il~~-----------~~~~p~~l~~  212 (612)
T KOG0603|consen  152 IACGTYEYRAPEIIN--GHLSAADWWSFGVLAFELLTGTLPFGG------DTMKRILKA-----------ELEMPRELSA  212 (612)
T ss_pred             hcccchhhhhhHhhh--ccCCcccchhhhhhHHHHhhCCCCCch------HHHHHHhhh-----------ccCCchhhhH
Confidence                 3345666554  356789999999999999999999932      222222221           1123445555


Q ss_pred             HHHHHHHHhccCCCCCCCCH
Q 006019          607 TLGELIKSCVRADPEKRPTM  626 (664)
Q Consensus       607 ~l~~l~~~Cl~~~P~~RPs~  626 (664)
                      .+.+++......+|..|--.
T Consensus       213 ~a~~~~~~l~~r~p~nrLg~  232 (612)
T KOG0603|consen  213 EARSLFRQLFKRNPENRLGA  232 (612)
T ss_pred             HHHHHHHHHHhhCHHHHhcc
Confidence            66677777777777777544

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.58  E-value=8.7e-15  Score=166.57  Aligned_cols=233  Identities=16%  Similarity=0.276  Sum_probs=157.6

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC---CCcccceEEEEecCCCceeEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN---HKNFVNLIGFCEEEEPFTRMM  450 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~---H~niv~l~g~~~~~~~~~~~l  450 (664)
                      +.+.||+|+||+||+|...+|+.||+|.=+....        -+|.-=.+++.+++   -+-|..+..++.-.+  ..+|
T Consensus       702 I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~--------WEfYI~~q~~~RLk~~~~~~~~~~~~a~~~~~--~S~l  771 (974)
T KOG1166|consen  702 ISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNP--------WEFYICLQVMERLKPQMLPSIMHISSAHVFQN--ASVL  771 (974)
T ss_pred             EEeeeccccceEEEEeecCCCcEEEEEeecCCCc--------eeeeehHHHHHhhchhhhcchHHHHHHHccCC--ccee
Confidence            3478999999999999988899999997654332        23333344455554   122333333333333  4589


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEec-------CCCceEecccCc
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT-------EDYAAKLSDLSF  523 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld-------~~~~~kl~DfGl  523 (664)
                      |+||.+.|+|.+++.  ..+.++|.....++.++++-++.||.++  |||+||||+|+||.       ++..++|+|||.
T Consensus       772 v~ey~~~Gtlld~~N--~~~~m~e~lv~~~~~qml~ive~lH~~~--IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~  847 (974)
T KOG1166|consen  772 VSEYSPYGTLLDLIN--TNKVMDEYLVMFFSCQMLRIVEHLHAMG--IIHGDIKPDNFLLRREICADSDSKGLYLIDFGR  847 (974)
T ss_pred             eeeccccccHHHhhc--cCCCCCchhhhHHHHHHHHHHHHHHhcc--eecccCCcceeEeecccCCCCcccceEEEeccc
Confidence            999999999999986  6677999999999999999999999999  99999999999995       234689999998


Q ss_pred             hhhhhh---h--------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccc
Q 006019          524 WNEIAM---A--------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQF  592 (664)
Q Consensus       524 a~~~~~---~--------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~  592 (664)
                      +-.+..   .        .......|...+...+.+.|-|.+.-+++-|+-|+.-            . ...+   -...
T Consensus       848 siDm~lfp~~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y~------------q-~~~g---~~~~  911 (974)
T KOG1166|consen  848 SIDMKLFPDGTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKYM------------E-VKNG---SSWM  911 (974)
T ss_pred             ceeeeEcCCCcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHHH------------H-hcCC---ccee
Confidence            755421   1        1111245667778889999999999999999998632            1 1111   1111


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          593 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       593 ~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      ++..+..+....  .-.++....+..|-..=|...++...|++++.
T Consensus       912 ~~~~~~Ry~~~~--~W~~~F~~lLN~~~~~~p~l~~lr~~~~~~~~  955 (974)
T KOG1166|consen  912 VKTNFPRYWKRD--MWNKFFDLLLNPDCDTLPNLQELRTELEEVLA  955 (974)
T ss_pred             ccccchhhhhHH--HHHHHHHHHhCcCcccchhHHHHHHHHHHHHH
Confidence            222222221111  11233334444444444788888888887764

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.57  E-value=5.7e-15  Score=148.18  Aligned_cols=190  Identities=18%  Similarity=0.247  Sum_probs=130.5

Q ss_pred             CCCcccceEEEEecCC-------------------------CceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHH
Q 006019          429 NHKNFVNLIGFCEEEE-------------------------PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMG  483 (664)
Q Consensus       429 ~H~niv~l~g~~~~~~-------------------------~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~  483 (664)
                      +|||||++.+++.+.-                         +...|+||.-.+. +|++++..   ...+...+.-|..|
T Consensus       274 ~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~-tLr~yl~~---~~~s~r~~~~~laQ  349 (598)
T KOG4158|consen  274 KHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQ-TLREYLWT---RHRSYRTGRVILAQ  349 (598)
T ss_pred             CCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchh-hHHHHHhc---CCCchHHHHHHHHH
Confidence            5899998887765421                         1146788887755 88888853   34566667778899


Q ss_pred             HHHHHHHhhcCCCCeEEeCcCCCCeEec--CCC--ceEecccCchhhhhh--h-------------hhhcccccccCCCC
Q 006019          484 MAYCLEHMHQLNPPIAHNYLNSSAVHLT--EDY--AAKLSDLSFWNEIAM--A-------------EMAATSKKLSSAPS  544 (664)
Q Consensus       484 ia~gL~yLH~~~~~ivHrDLk~~NILld--~~~--~~kl~DfGla~~~~~--~-------------~~~~~~pe~~~~~~  544 (664)
                      +++|..|||+++  |.|||+|+.|||+.  +|.  ...|+|||.+--...  -             .....+||...+..
T Consensus       350 lLEav~hL~~hg--vAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi~ta~P  427 (598)
T KOG4158|consen  350 LLEAVTHLHKHG--VAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEIATAVP  427 (598)
T ss_pred             HHHHHHHHHHcc--chhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecchhhhhcCC
Confidence            999999999999  99999999999984  454  457899996432211  0             01123566554322


Q ss_pred             ------CCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccC
Q 006019          545 ------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRA  618 (664)
Q Consensus       545 ------~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~  618 (664)
                            --.|+|.|+.|-+.||+++...||...+.-..+        ...   +-...++..++.++..+.+++...++.
T Consensus       428 Gp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem~L~--------~r~---Yqe~qLPalp~~vpp~~rqlV~~lL~r  496 (598)
T KOG4158|consen  428 GPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEMLLD--------TRT---YQESQLPALPSRVPPVARQLVFDLLKR  496 (598)
T ss_pred             CCceeeccchhhhhhhhhhHHHHhccCCcccccchheec--------hhh---hhhhhCCCCcccCChHHHHHHHHHhcC
Confidence                  145899999999999999999999542211100        011   111233444555666788999999999


Q ss_pred             CCCCCCCHHHHHHHHHh
Q 006019          619 DPEKRPTMRDIAAILRE  635 (664)
Q Consensus       619 ~P~~RPs~~ev~~~L~~  635 (664)
                      ||.+|++..-....|.-
T Consensus       497 ~pskRvsp~iAANvl~L  513 (598)
T KOG4158|consen  497 DPSKRVSPNIAANVLNL  513 (598)
T ss_pred             CccccCCccHHHhHHHH
Confidence            99999998777666653

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.57  E-value=1.2e-14  Score=140.02  Aligned_cols=141  Identities=13%  Similarity=0.112  Sum_probs=98.1

Q ss_pred             hcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhH-------------------HHHHHHHHHHHhccCCCc--c
Q 006019          375 SNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNL-------------------EVQFRKKIDTLSKVNHKN--F  433 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~-------------------~~~f~~E~~~l~~l~H~n--i  433 (664)
                      .+.||+|+||.||+|...+++.||||+.............                   ......|.+.+.++++..  +
T Consensus         2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~   81 (187)
T cd05119           2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV   81 (187)
T ss_pred             CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence            3679999999999999888999999988643221100000                   001135666666665443  4


Q ss_pred             cceEEEEecCCCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEEeCcCCCCeEecC
Q 006019          434 VNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTE  512 (664)
Q Consensus       434 v~l~g~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~-~~~~ivHrDLk~~NILld~  512 (664)
                      .+.+++.      ..++||||++++.+....-...  ... ....+++.+++.++.++|. .+  |+||||||+||+++ 
T Consensus        82 ~~~~~~~------~~~lv~e~~~g~~~~~~~l~~~--~~~-~~~~~~~~~~~~~l~~lh~~~~--ivH~Dl~p~Nili~-  149 (187)
T cd05119          82 PKPIDLN------RHVLVMEFIGGDGIPAPRLKDV--RLL-EDPEELYDQILELMRKLYREAG--LVHGDLSEYNILVD-  149 (187)
T ss_pred             CceEecC------CCEEEEEEeCCCCccChhhhhh--hhc-ccHHHHHHHHHHHHHHHhhccC--cCcCCCChhhEEEE-
Confidence            4444432      3489999999965432111000  011 5567899999999999998 88  99999999999999 


Q ss_pred             CCceEecccCchhhh
Q 006019          513 DYAAKLSDLSFWNEI  527 (664)
Q Consensus       513 ~~~~kl~DfGla~~~  527 (664)
                      ++.++++|||.+...
T Consensus       150 ~~~~~liDfg~a~~~  164 (187)
T cd05119         150 DGKVYIIDVPQAVEI  164 (187)
T ss_pred             CCcEEEEECcccccc
Confidence            999999999998655

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.53  E-value=7.2e-14  Score=128.82  Aligned_cols=133  Identities=14%  Similarity=0.129  Sum_probs=109.6

Q ss_pred             cccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCC--CcccceEEEEecCCCceeEEEEE
Q 006019          376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH--KNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H--~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.||+|.++.||++...+ ..+++|.......       ...+.+|+..+..++|  .++++++++....+  ..++++|
T Consensus         4 ~~i~~g~~~~v~~~~~~~-~~~~iK~~~~~~~-------~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~--~~~~v~e   73 (155)
T cd05120           4 KLLKGGLTNRVYLLGTKD-EDYVLKINPSREK-------GADREREVAILQLLARKGLPVPKVLASGESDG--WSYLLME   73 (155)
T ss_pred             eecccccccceEEEEecC-CeEEEEecCCCCc-------hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--ccEEEEE
Confidence            579999999999999855 6788887743221       3578999999999987  58999988887655  5699999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCC-CCeEEeCcCCCCeEecCCCceEecccCchhhh
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLN-PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~-~~ivHrDLk~~NILld~~~~~kl~DfGla~~~  527 (664)
                      |++++.+..+         +......++.+++++++++|... ..++|+|++|+||+++.++.+++.|||.++..
T Consensus        74 ~~~g~~~~~~---------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~~  139 (155)
T cd05120          74 WIEGETLDEV---------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGYG  139 (155)
T ss_pred             ecCCeecccC---------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccCC
Confidence            9998777543         56677889999999999999742 35999999999999999999999999987643

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.52  E-value=9.6e-14  Score=138.52  Aligned_cols=142  Identities=14%  Similarity=0.095  Sum_probs=107.0

Q ss_pred             cccc-cCCCeEEEEEEECCCcEEEEEEeeeccc-----C-C--CchhHHHHHHHHHHHHhccCCCcc--cceEEEEecCC
Q 006019          376 NVIG-SSPIGTVYKGTLSNGVEIAVASVSVASA-----K-D--WPKNLEVQFRKKIDTLSKVNHKNF--VNLIGFCEEEE  444 (664)
Q Consensus       376 ~~iG-~G~~G~Vy~g~~~~~~~vavk~~~~~~~-----~-~--~~~~~~~~f~~E~~~l~~l~H~ni--v~l~g~~~~~~  444 (664)
                      ..|| .|+.|+||+.... +..++||.......     . .  +.......+.+|++++.+++|+++  ++.+++.....
T Consensus        37 ~~lg~~~g~gtv~~v~~~-~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~~  115 (239)
T PRK01723         37 RVVGSAKGRGTTWFVQTP-GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVRH  115 (239)
T ss_pred             ceeecCCCCccEEEEEeC-CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeeec
Confidence            5788 8999999999885 66788888754221     1 0  111233568899999999998885  67777754432


Q ss_pred             Cc--eeEEEEEecCC-CChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEeccc
Q 006019          445 PF--TRMMVFEYAPN-GTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDL  521 (664)
Q Consensus       445 ~~--~~~lV~Ey~~~-GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~Df  521 (664)
                      ..  ..++|+||+++ .+|.+++..   ..++..    .+.+++.++.+||+.+  |+||||||.|||++.++.++|+||
T Consensus       116 ~~~~~~~lV~e~l~G~~~L~~~l~~---~~l~~~----~~~~i~~~l~~lH~~G--I~HrDlkp~NILv~~~~~v~LIDf  186 (239)
T PRK01723        116 GLFYRADILIERIEGARDLVALLQE---APLSEE----QWQAIGQLIARFHDAG--VYHADLNAHNILLDPDGKFWLIDF  186 (239)
T ss_pred             CcceeeeEEEEecCCCCCHHHHHhc---CCCCHH----HHHHHHHHHHHHHHCC--CCCCCCCchhEEEcCCCCEEEEEC
Confidence            21  23599999997 689888753   234433    3567899999999999  999999999999999999999999


Q ss_pred             Cchhhh
Q 006019          522 SFWNEI  527 (664)
Q Consensus       522 Gla~~~  527 (664)
                      |.++..
T Consensus       187 g~~~~~  192 (239)
T PRK01723        187 DRGELR  192 (239)
T ss_pred             CCcccC
Confidence            987654

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.46  E-value=2.6e-13  Score=147.06  Aligned_cols=147  Identities=17%  Similarity=0.218  Sum_probs=102.5

Q ss_pred             cccccCCCeEEEEEEECCCcEEEEEEeeecccCCCch-------------------------h----------HHHHHHH
Q 006019          376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPK-------------------------N----------LEVQFRK  420 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~-------------------------~----------~~~~f~~  420 (664)
                      +.||+|++|.||+|++.+|+.||||+......+....                         .          .+-+|.+
T Consensus       123 ~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~~  202 (437)
T TIGR01982       123 KPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLRR  202 (437)
T ss_pred             cceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHHH
Confidence            5799999999999999999999999986542111000                         0          0113666


Q ss_pred             HHHHHhccC----CCcccceEEEEecCCCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHH-HHHHhhcCC
Q 006019          421 KIDTLSKVN----HKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAY-CLEHMHQLN  495 (664)
Q Consensus       421 E~~~l~~l~----H~niv~l~g~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~-gL~yLH~~~  495 (664)
                      |++.+.+++    |.+-+.+-.++.+... ..+|||||+++++|.+....... ..   .+.+++..++. .+..+|..+
T Consensus       203 Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~-~~vLvmE~i~G~~L~~~~~~~~~-~~---~~~~ia~~~~~~~l~ql~~~g  277 (437)
T TIGR01982       203 EAANASELGENFKNDPGVYVPEVYWDRTS-ERVLTMEWIDGIPLSDIAALDEA-GL---DRKALAENLARSFLNQVLRDG  277 (437)
T ss_pred             HHHHHHHHHHhcCCCCCEEeCCEehhhcC-CceEEEEeECCcccccHHHHHhc-CC---CHHHHHHHHHHHHHHHHHhCC
Confidence            777666663    3333443333332111 45899999999999887643211 12   24567777666 456778888


Q ss_pred             CCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          496 PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       496 ~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                        ++|+|++|.||++++++.+++.|||++..+..
T Consensus       278 --~~H~D~hPgNilv~~~g~i~liDfG~~~~l~~  309 (437)
T TIGR01982       278 --FFHADLHPGNIFVLKDGKIIALDFGIVGRLSE  309 (437)
T ss_pred             --ceeCCCCcccEEECCCCcEEEEeCCCeeECCH
Confidence              99999999999999999999999999877643

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.41  E-value=1.9e-13  Score=134.37  Aligned_cols=193  Identities=16%  Similarity=0.259  Sum_probs=130.9

Q ss_pred             HHHHhccCCCcccceEEEEecCCC---ceeEEEEEecCCCChhhhhcccC--CCCCCHHHHHHHHHHHHHHHHHhhcCCC
Q 006019          422 IDTLSKVNHKNFVNLIGFCEEEEP---FTRMMVFEYAPNGTLFEHIHIKE--SEHLDWGMRLRIAMGMAYCLEHMHQLNP  496 (664)
Q Consensus       422 ~~~l~~l~H~niv~l~g~~~~~~~---~~~~lV~Ey~~~GsL~~~l~~~~--~~~l~~~~~~~ia~~ia~gL~yLH~~~~  496 (664)
                      .+-+-.+.|.|||+++.|+.+...   .....+.|||+.|++..+|+...  ...+....-.+++.||..||.|||++.|
T Consensus       118 FdnllqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs~~P  197 (458)
T KOG1266|consen  118 FDNLLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHSCDP  197 (458)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhccCC
Confidence            344555679999999999976432   24678999999999999997432  3345555556799999999999999999


Q ss_pred             CeEEeCcCCCCeEecCCCceEecccC--chhhh----h-------hhhhhcccccccCCCCCCcCCcchhhHHHHHHHHh
Q 006019          497 PIAHNYLNSSAVHLTEDYAAKLSDLS--FWNEI----A-------MAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT  563 (664)
Q Consensus       497 ~ivHrDLk~~NILld~~~~~kl~DfG--la~~~----~-------~~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t  563 (664)
                      +|+|+++..+-|++..++-+|+.---  .....    .       ..-....++++......+..+|||+||+..+||..
T Consensus       198 piihgnlTc~tifiq~ngLIkig~~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fgmcAlemai  277 (458)
T KOG1266|consen  198 PIIHGNLTCDTIFIQHNGLIKIGSVAPDSTHPSVNSTREAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFGMCALEMAI  277 (458)
T ss_pred             ccccCCcchhheeecCCceEEecccCccccchhhhhhhHhhhhccccCCccccCCcCcccccccchhhhhhhHHHHHHHH
Confidence            99999999999999999999986321  10000    0       00112234666666667888999999999999988


Q ss_pred             CCCC-ccCCCCChHH-HHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          564 GRLP-YLVDNGSLED-WAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       564 G~~P-~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      |..- -..+.....+ -....      +....++.           =.+++.+|++-.|..||+|++++-
T Consensus       278 lEiq~tnseS~~~~ee~ia~~------i~~len~l-----------qr~~i~kcl~~eP~~rp~ar~llf  330 (458)
T KOG1266|consen  278 LEIQSTNSESKVEVEENIANV------IIGLENGL-----------QRGSITKCLEGEPNGRPDARLLLF  330 (458)
T ss_pred             heeccCCCcceeehhhhhhhh------eeeccCcc-----------ccCcCcccccCCCCCCcchhhhhc
Confidence            7643 2111110000 00000      11111111           125778899999999999998754

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=1.5e-13  Score=143.97  Aligned_cols=157  Identities=17%  Similarity=0.263  Sum_probs=118.2

Q ss_pred             eeEEEEEecCCCChhhhhcc-cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchh
Q 006019          447 TRMMVFEYAPNGTLFEHIHI-KESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN  525 (664)
Q Consensus       447 ~~~lV~Ey~~~GsL~~~l~~-~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~  525 (664)
                      ..++.|++|...+|.+|+.. ......+|...+.++.+++.|++|   ++  .+|||+||.||....+...||.|||+..
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y---k~--~ihrdlkp~nif~~~d~q~kIgDFgl~t  404 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY---KG--LIHRDLKPSNIFFSDDDQLKIGDFGLVT  404 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh---cc--chhhhccccccccccchhhhhhhhhhee
Confidence            46899999999999999963 356678889999999999999999   55  9999999999999999999999999865


Q ss_pred             hhhhh---------------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCC
Q 006019          526 EIAMA---------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPL  589 (664)
Q Consensus       526 ~~~~~---------------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~  589 (664)
                      .....               +..|++||...+..++.|+||||+|++|+|+++ =..++..            .   ..+
T Consensus       405 s~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~f~T~~er------------~---~t~  469 (516)
T KOG1033|consen  405 SQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQFSTQFER------------I---ATL  469 (516)
T ss_pred             ecccCCcccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHHhccHHHH------------H---Hhh
Confidence            44321               234567887888889999999999999999998 3333310            0   111


Q ss_pred             ccccCCCCC-----CCCHHHHHHHHHHHHHhccCCCCCCCCHHH
Q 006019          590 QQFVDPTLS-----SFDEEQLETLGELIKSCVRADPEKRPTMRD  628 (664)
Q Consensus       590 ~~~~d~~~~-----~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~e  628 (664)
                      .++-|..++     +++.     -+.++.+.+...|.+||++.+
T Consensus       470 ~d~r~g~ip~~~~~d~p~-----e~~ll~~lls~~p~~RP~~~~  508 (516)
T KOG1033|consen  470 TDIRDGIIPPEFLQDYPE-----EYTLLQQLLSPSPEERPSAIE  508 (516)
T ss_pred             hhhhcCCCChHHhhcCcH-----HHHHHHHhcCCCcccCchHHH
Confidence            111122221     2222     357899999999999995443

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.34  E-value=1.8e-12  Score=145.04  Aligned_cols=129  Identities=19%  Similarity=0.266  Sum_probs=95.6

Q ss_pred             HHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh------------------------hhhccccccc
Q 006019          485 AYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA------------------------EMAATSKKLS  540 (664)
Q Consensus       485 a~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~------------------------~~~~~~pe~~  540 (664)
                      +.+++|||+.+  |+|||+||.|.++..-|.+|++|||+++..-+.                        ...+.+||+.
T Consensus       153 vla~Eylh~yg--ivhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVi  230 (1205)
T KOG0606|consen  153 VLAVEYLHSYG--IVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEVI  230 (1205)
T ss_pred             hHHhHhhccCC--eecCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccChhhh
Confidence            77899999998  999999999999999999999999998755211                        0112245555


Q ss_pred             CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCC
Q 006019          541 SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADP  620 (664)
Q Consensus       541 ~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P  620 (664)
                      ....|....|.|++|+++||.+.|+.||.+  ...++.+..++.+.....+-        ++....++.+++.+.++.+|
T Consensus       231 lrqgygkpvdwwamGiIlyeFLVgcvpffG--dtpeelfg~visd~i~wpE~--------dea~p~Ea~dli~~LL~qnp  300 (1205)
T KOG0606|consen  231 LRQGYGKPVDWWAMGIILYEFLVGCVPFFG--DTPEELFGQVISDDIEWPEE--------DEALPPEAQDLIEQLLRQNP  300 (1205)
T ss_pred             hhhccCCCccHHHHHHHHHHHheeeeeccC--CCHHHHHhhhhhhhcccccc--------CcCCCHHHHHHHHHHHHhCh
Confidence            556678889999999999999999999943  33455555555442222111        22233568899999999999


Q ss_pred             CCCCC
Q 006019          621 EKRPT  625 (664)
Q Consensus       621 ~~RPs  625 (664)
                      .+|--
T Consensus       301 ~~Rlg  305 (1205)
T KOG0606|consen  301 LCRLG  305 (1205)
T ss_pred             Hhhcc
Confidence            99953

>PLN03150 hypothetical protein; Provisional

Probab=99.28  E-value=4.3e-12  Score=143.95  Aligned_cols=90  Identities=28%  Similarity=0.459  Sum_probs=88.0

Q ss_pred             CCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecccCcccccCCccccCCCCCCEeeCC
Q 006019           98 HIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVD  177 (664)
Q Consensus        98 ~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~  177 (664)
                      .++.|+|++|.+.|.+|..++.|++|+.|+|++|+|+|.+|..++.+++|+.|+|++|+|+|.+|..++++++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccccc
Q 006019          178 EGQLSSAAKK  187 (664)
Q Consensus       178 ~n~l~g~~p~  187 (664)
                      +|+|+|.+|.
T Consensus       499 ~N~l~g~iP~  508 (623)
T PLN03150        499 GNSLSGRVPA  508 (623)
T ss_pred             CCcccccCCh
Confidence            9999999996

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.22  E-value=1.6e-12  Score=145.41  Aligned_cols=241  Identities=17%  Similarity=0.236  Sum_probs=164.7

Q ss_pred             cccccCCCeEEEEEEECC--CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcccceEEEEecCCCceeEEEE
Q 006019          376 NVIGSSPIGTVYKGTLSN--GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~--~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.||+|+|+.|-......  ...+|+|.+.... +.  .........|..+-+.+. |+|++++++...+.+  ..+++.
T Consensus        26 ~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~-~~--~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~--~~~~~~  100 (601)
T KOG0590|consen   26 RSIGKGSFSSSALASNSRDPESSSATKPISIPP-KS--EDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPR--SYLLSL  100 (601)
T ss_pred             ccccccccchhhhhhhcCCCcceeeccCCCCCC-Cc--cchhhhcCccccccccccccccccccCCccCCCc--cccccc
Confidence            459999999998887543  3445555554332 11  223344556777777776 999999999988877  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhh-cCCCCeEEeCcCCCCeEecCCC-ceEecccCchhhhhh-
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMH-QLNPPIAHNYLNSSAVHLTEDY-AAKLSDLSFWNEIAM-  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH-~~~~~ivHrDLk~~NILld~~~-~~kl~DfGla~~~~~-  529 (664)
                      ||..+|++.+.+........+.........++..++.|+| .++  +.|||+||+|.+++..+ ..|++|||+|..... 
T Consensus       101 ~~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~~~~--~~h~~ikP~n~~l~~s~~~l~~~df~~At~~~~~  178 (601)
T KOG0590|consen  101 SYSDGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHPENG--VTHRDIKPSNSLLDESGSALKIADFGLATAYRNK  178 (601)
T ss_pred             CcccccccccccccCCccCCCCcchhhhhhhhccCccccCcccc--cccCCCCCccchhccCCCcccCCCchhhcccccc
Confidence            9999999998882122223444556668889999999999 777  99999999999999999 999999999876643 


Q ss_pred             h------------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCC
Q 006019          530 A------------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  596 (664)
Q Consensus       530 ~------------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  596 (664)
                      .            ...+.+||.... .......|+||.|+++.-+++|..|+.........+... ... .      +..
T Consensus       179 ~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~~~~~~~-~~~-~------~~~  250 (601)
T KOG0590|consen  179 NGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSRKDGRYSSW-KSN-K------GRF  250 (601)
T ss_pred             CCcceeeecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCCCccccccccccceee-ccc-c------ccc
Confidence            1            223344555554 244667899999999999999999985322111110000 000 0      000


Q ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          597 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       597 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .............++..+++..+|+.|.+.+++..
T Consensus       251 ~~~~~~~~~~~~~~~l~k~l~~~~~~r~s~~~~~~  285 (601)
T KOG0590|consen  251 TQLPWNSISDQAHDLLHKILKENPSNRLSIEELKL  285 (601)
T ss_pred             ccCccccCChhhhhcccccccCCchhccccccccc
Confidence            00011112234668888899899999998887654

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.20  E-value=6.6e-11  Score=111.81  Aligned_cols=129  Identities=15%  Similarity=0.090  Sum_probs=94.5

Q ss_pred             cccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCccc-ceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV-NLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv-~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      +.++.|.++.||+++.. +..+++|.......      ....+..|+++++.+.+.+++ +++++..  .  ..++||||
T Consensus         4 ~~l~~G~~~~vy~~~~~-~~~~~lK~~~~~~~------~~~~~~~E~~~l~~l~~~~~~P~~~~~~~--~--~~~lv~e~   72 (170)
T cd05151           4 SPLKGGMTNKNYRVEVA-NKKYVVRIPGNGTE------LLINRENEAENSKLAAEAGIGPKLYYFDP--E--TGVLITEF   72 (170)
T ss_pred             eecCCcccCceEEEEEC-CeEEEEEeCCCCcc------cccCHHHHHHHHHHHHHhCCCCceEEEeC--C--CCeEEEEe
Confidence            46899999999999975 67788987643221      123567899999988766654 4554432  2  23799999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCC---CCeEEeCcCCCCeEecCCCceEecccCchhh
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLN---PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  526 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~---~~ivHrDLk~~NILld~~~~~kl~DfGla~~  526 (664)
                      +++.++.+..          .....++.+++++++.||+..   ..++|+|+++.||+++ ++.+++.|||.+..
T Consensus        73 i~G~~l~~~~----------~~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~  136 (170)
T cd05151          73 IEGSELLTED----------FSDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGM  136 (170)
T ss_pred             cCCCcccccc----------ccCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccC
Confidence            9998876430          011345678999999999875   2369999999999999 66899999997653

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.19  E-value=2.3e-11  Score=133.49  Aligned_cols=146  Identities=12%  Similarity=0.136  Sum_probs=91.6

Q ss_pred             cccccCCCeEEEEEEECC-CcEEEEEEeeecccCC------------------------C-ch----hHH------HHHH
Q 006019          376 NVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKD------------------------W-PK----NLE------VQFR  419 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~-~~~vavk~~~~~~~~~------------------------~-~~----~~~------~~f~  419 (664)
                      +.||+|++|.||+|++++ |+.||||+......+.                        . ..    +..      -+|.
T Consensus       125 ~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~~ElD~~  204 (537)
T PRK04750        125 KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLHDELDLM  204 (537)
T ss_pred             hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHhhCHH
Confidence            579999999999999987 9999999997542110                        0 00    111      2355


Q ss_pred             HHHHHHhccC----CCcccceEEEEecCCCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHH-HHhhcC
Q 006019          420 KKIDTLSKVN----HKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCL-EHMHQL  494 (664)
Q Consensus       420 ~E~~~l~~l~----H~niv~l~g~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL-~yLH~~  494 (664)
                      +|+..+.+++    +.+.+.+-.++.+-.. ..+|||||++|+.+.+.-.... ...+   +..++...+... .-++..
T Consensus       205 ~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st-~~VLvmE~i~G~~l~d~~~l~~-~g~d---~~~la~~~v~~~~~Qif~~  279 (537)
T PRK04750        205 REAANASQLRRNFEDSDMLYVPEVYWDYCS-ETVMVMERMYGIPVSDVAALRA-AGTD---MKLLAERGVEVFFTQVFRD  279 (537)
T ss_pred             HHHHHHHHHHHHccCCCCeecceeecccCC-CceEEEeeecCccHHhHHHHHh-cCCC---HHHHHHHHHHHHHHHHHhC
Confidence            5555555553    4444443333332111 4589999999999977422111 1122   222333332221 122445


Q ss_pred             CCCeEEeCcCCCCeEecCCC----ceEecccCchhhhh
Q 006019          495 NPPIAHNYLNSSAVHLTEDY----AAKLSDLSFWNEIA  528 (664)
Q Consensus       495 ~~~ivHrDLk~~NILld~~~----~~kl~DfGla~~~~  528 (664)
                      +  ++|+|+||.||+++.++    .+++.|||+...+.
T Consensus       280 G--ffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~  315 (537)
T PRK04750        280 G--FFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLN  315 (537)
T ss_pred             C--eeeCCCChHHeEEecCCCCCCeEEEEecceEEECC
Confidence            6  99999999999999988    99999999977653

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.09  E-value=5.2e-12  Score=113.28  Aligned_cols=116  Identities=22%  Similarity=0.373  Sum_probs=94.1

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|-|+.|.++ .+||.|+.|.+|+.|++++|++. .+|..+.+|++|+.|+++-|++. .+|..||.++.|++|||
T Consensus        33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL  109 (264)
T ss_pred             hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence            57788888888888 68888888888999999988887 68888888888888888888888 78888888888888888


Q ss_pred             ccCcccc-cCCccccCCCCCCEeeCCCCcccccccccccc
Q 006019          153 DNNDFVG-SLSPEIYKLQVLSESQVDEGQLSSAAKKEQSC  191 (664)
Q Consensus       153 ~~N~~~g-~iP~~~~~l~~L~~l~l~~n~l~g~~p~~~~~  191 (664)
                      .+|+++. .+|..|+-++.|+.|+|+.|.|.=..|..+..
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~l  149 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKL  149 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhh
Confidence            8888864 67878888888888888888886544443333

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.08  E-value=1.3e-11  Score=110.86  Aligned_cols=108  Identities=33%  Similarity=0.508  Sum_probs=99.7

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccc-cCCccccCCcccceee
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG-PLPNDLGINHSLTILL  151 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g-~ip~~~~~~~~L~~l~  151 (664)
                      .++..|++++|++. .+|.++..|++|+.|++.-|.+. .+|.+||.++.|++|||.+|+++- .+|..|..++.|+.|+
T Consensus        56 ~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly  133 (264)
T KOG0617|consen   56 KNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY  133 (264)
T ss_pred             hhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence            36788999999998 79999999999999999999997 799999999999999999999974 5888899999999999


Q ss_pred             cccCcccccCCccccCCCCCCEeeCCCCcccc
Q 006019          152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (664)
Q Consensus       152 l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g  183 (664)
                      |+.|.|. -+|++++++++|+.|.+..|.+-.
T Consensus       134 l~dndfe-~lp~dvg~lt~lqil~lrdndll~  164 (264)
T KOG0617|consen  134 LGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS  164 (264)
T ss_pred             hcCCCcc-cCChhhhhhcceeEEeeccCchhh
Confidence            9999998 899999999999999999998863

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=99.04  E-value=2.1e-09  Score=106.15  Aligned_cols=145  Identities=14%  Similarity=0.139  Sum_probs=108.9

Q ss_pred             cccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCC--CcccceEEEEecCCC-ceeEEEE
Q 006019          376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH--KNFVNLIGFCEEEEP-FTRMMVF  452 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H--~niv~l~g~~~~~~~-~~~~lV~  452 (664)
                      +.|+.|.++.||+++..+|..+++|........    ....++..|+++++.+++  .++.++++++..... ...++||
T Consensus         4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~----~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~   79 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALL----PSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVM   79 (223)
T ss_pred             eecCCCccceEEEEEecCCcceEEEeCCCcccC----cccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEE
Confidence            468999999999999877788889887543221    123468899999999976  446778887765320 1348999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcC--------------------------------------
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL--------------------------------------  494 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~--------------------------------------  494 (664)
                      ||++++++.+.+..   ..++..++..++.+++++|.+||+.                                      
T Consensus        80 e~i~G~~l~~~~~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (223)
T cd05154          80 ERVDGRVLRDRLLR---PELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPA  156 (223)
T ss_pred             EEeCCEecCCCCCC---CCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccccHH
Confidence            99999888776531   3467777888888888888888842                                      


Q ss_pred             ----------------CCCeEEeCcCCCCeEecC--CCceEecccCchhhh
Q 006019          495 ----------------NPPIAHNYLNSSAVHLTE--DYAAKLSDLSFWNEI  527 (664)
Q Consensus       495 ----------------~~~ivHrDLk~~NILld~--~~~~kl~DfGla~~~  527 (664)
                                      ...++|+|+.+.||+++.  +..+.|.||+.+...
T Consensus       157 ~~~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~g  207 (223)
T cd05154         157 MERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATLG  207 (223)
T ss_pred             HHHHHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEeccccccC
Confidence                            134799999999999998  667899999876543

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=98.99  E-value=5.4e-09  Score=99.90  Aligned_cols=140  Identities=12%  Similarity=0.138  Sum_probs=98.4

Q ss_pred             cccccCCCeEEEEEEECC-------CcEEEEEEeeecccC-----CCc------------hhHHHHHH----HHHHHHhc
Q 006019          376 NVIGSSPIGTVYKGTLSN-------GVEIAVASVSVASAK-----DWP------------KNLEVQFR----KKIDTLSK  427 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~-------~~~vavk~~~~~~~~-----~~~------------~~~~~~f~----~E~~~l~~  427 (664)
                      ..||.|-=+.||.|.-.+       +..+|||+.+.....     .+-            ....+.+.    +|.+.|.+
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r   82 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR   82 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            468999999999998543       478999988643210     000            11122334    89999999


Q ss_pred             cCC--CcccceEEEEecCCCceeEEEEEecCCCChhh-hhcccCCCCCCHHHHHHHHHHHHHHHHHh-hcCCCCeEEeCc
Q 006019          428 VNH--KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFE-HIHIKESEHLDWGMRLRIAMGMAYCLEHM-HQLNPPIAHNYL  503 (664)
Q Consensus       428 l~H--~niv~l~g~~~~~~~~~~~lV~Ey~~~GsL~~-~l~~~~~~~l~~~~~~~ia~~ia~gL~yL-H~~~~~ivHrDL  503 (664)
                      +..  -++.+.+++  .    ..+|||||+.++.+.. .+.   ...++..+..++..++..++.+| |+.+  +|||||
T Consensus        83 l~~~Gv~vP~pi~~--~----~~~lvME~Ig~~~~~~~~Lk---d~~~~~~~~~~i~~~i~~~l~~l~H~~g--lVHGDL  151 (197)
T cd05146          83 MQKAGIPCPEVVVL--K----KHVLVMSFIGDDQVPAPKLK---DAKLNDEEMKNAYYQVLSMMKQLYKECN--LVHADL  151 (197)
T ss_pred             HHHcCCCCCeEEEe--c----CCEEEEEEcCCCCccchhhh---ccccCHHHHHHHHHHHHHHHHHHHHhCC--eecCCC
Confidence            853  466667764  2    3379999997654422 221   12244455667888999999999 8888  999999


Q ss_pred             CCCCeEecCCCceEecccCchhhh
Q 006019          504 NSSAVHLTEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       504 k~~NILld~~~~~kl~DfGla~~~  527 (664)
                      ++.|||++ ++.+.|+|||-+...
T Consensus       152 s~~NIL~~-~~~v~iIDF~qav~~  174 (197)
T cd05146         152 SEYNMLWH-DGKVWFIDVSQSVEP  174 (197)
T ss_pred             CHHHEEEE-CCcEEEEECCCceeC
Confidence            99999997 467999999976544

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.95  E-value=5.8e-09  Score=95.69  Aligned_cols=146  Identities=14%  Similarity=0.112  Sum_probs=98.4

Q ss_pred             cccccCCCeEEEEEEECCCcEEEEEEeeecccCC---CchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKD---WPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~---~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      ..+-+|+-+.|+++.+. |+...||.-..+.-..   ..+-..+...+|++.+.+++--.|.--.-++.+..  .-.|+|
T Consensus        13 ~likQGAEArv~~~~~~-Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~--~~~i~M   89 (229)
T KOG3087|consen   13 ELIKQGAEARVPRGSFS-GEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTY--GGQIYM   89 (229)
T ss_pred             eeeeccceeeEeeeccC-CceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecC--CCeEEE
Confidence            57899999999999985 4554555332211111   01223456789999999986444433333333333  337999


Q ss_pred             EecCC-CChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC---ceEecccCchhh
Q 006019          453 EYAPN-GTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY---AAKLSDLSFWNE  526 (664)
Q Consensus       453 Ey~~~-GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~---~~kl~DfGla~~  526 (664)
                      ||+++ -++.+++.........-.....++..|-+.+.-||..+  ++|+||.++||+|..++   .+.+.|||++..
T Consensus        90 E~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~nd--iiHGDLTTSNill~~~~~~~~~~lIdfgls~~  165 (229)
T KOG3087|consen   90 EFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHDND--IIHGDLTTSNILLRSDGNQITPILIDFGLSSV  165 (229)
T ss_pred             EeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhhhCC--eecccccccceEEecCCCcCceEEEeecchhc
Confidence            99976 47777775432222222333677888888999999999  99999999999997665   458999998654

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.92  E-value=9.2e-09  Score=94.93  Aligned_cols=136  Identities=15%  Similarity=0.141  Sum_probs=94.5

Q ss_pred             ccccCCCeEEEEEEECCCcEEEEEEeeecccCCC---chhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          377 VIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDW---PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       377 ~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+++|+=..+|.+.+-+.. +.+|.-..+.-...   .+-....-.+|+.++.+++--.|.--.=|..+.+  ...|+||
T Consensus         3 ~i~~GAEa~i~~~~~~g~~-av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~--~~~I~me   79 (204)
T COG3642           3 LIKQGAEAIIYLTDFLGLP-AVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPD--NGLIVME   79 (204)
T ss_pred             hhhCCcceeEEeeeccCcc-eEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCC--CCEEEEE
Confidence            5789999999999875433 44443222211110   0112345678999999886444433333333433  5589999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhh
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~  527 (664)
                      |+++-.|.+.+...         +..++..+-.-+.-||..+  |+|+||.++||++..+. +.++|||++...
T Consensus        80 ~I~G~~lkd~l~~~---------~~~~~r~vG~~vg~lH~~g--ivHGDLTtsNiIl~~~~-i~~IDfGLg~~s  141 (204)
T COG3642          80 YIEGELLKDALEEA---------RPDLLREVGRLVGKLHKAG--IVHGDLTTSNIILSGGR-IYFIDFGLGEFS  141 (204)
T ss_pred             EeCChhHHHHHHhc---------chHHHHHHHHHHHHHHhcC--eecCCCccceEEEeCCc-EEEEECCccccc
Confidence            99998888888532         3567777778888899999  99999999999998766 999999997744

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.85  E-value=2.8e-09  Score=75.38  Aligned_cols=41  Identities=41%  Similarity=0.981  Sum_probs=30.4

Q ss_pred             hHHHHHHHHHHHhcccCCCCCCCCCCCCCC-CCCCCccceeEec
Q 006019           29 NDEGLALLRLRERVVRDPYGALTSWRSCDT-ENNPCSWFGVECS   71 (664)
Q Consensus        29 ~~~~~all~~k~~~~~~~~~~l~~W~~~~~-~~~~C~w~gv~C~   71 (664)
                      ++|++||++||+++..+|.+.+.+|+  .. ..+||+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~--~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWN--PSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT----TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCC--CcCCCCCeeeccEEeC
Confidence            57999999999999877778999998  22 3799999999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.83  E-value=3.9e-09  Score=113.26  Aligned_cols=244  Identities=21%  Similarity=0.248  Sum_probs=157.3

Q ss_pred             HHHHHHhhhhccccc--CCCeEEEEEEE---CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcccceEEE
Q 006019          366 ELEAACEDFSNVIGS--SPIGTVYKGTL---SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGF  439 (664)
Q Consensus       366 el~~~~~~~~~~iG~--G~~G~Vy~g~~---~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~  439 (664)
                      ++.+.+..+...+|.  |.+|.||++..   .++..+|+|+-+.....   ......=.+|.....+++ |+|.|+..-.
T Consensus       110 s~~~~~~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~---p~~~~~k~~~~~s~~~i~~~~~~v~~~~~  186 (524)
T KOG0601|consen  110 SFFDQRFPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSP---PLDSKRKLREFLSHHKIDSHENPVRDSPA  186 (524)
T ss_pred             chhhhhcccccccccCCCCCceeecccCCcccCCcccccccccCCCCC---ccccccccchhhcccccCccccccccCcc
Confidence            334444445677999  99999999987   35778888874322211   011122345666666664 9999998877


Q ss_pred             EecCCCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHH----HHHHhhcCCCCeEEeCcCCCCeEecCC-C
Q 006019          440 CEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAY----CLEHMHQLNPPIAHNYLNSSAVHLTED-Y  514 (664)
Q Consensus       440 ~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~----gL~yLH~~~~~ivHrDLk~~NILld~~-~  514 (664)
                      +.+.+  ..++-+|++. .+|.++.+.. ...+.......+..+..+    |+.++|...  ++|-|+||.||+...+ .
T Consensus       187 ~e~~~--~lfiqtE~~~-~sl~~~~~~~-~~~~p~~~l~~~~~~~~~~~~~al~~~hs~~--~~~~~~kp~~i~~~~~~~  260 (524)
T KOG0601|consen  187 WEGSG--ILFIQTELCG-ESLQSYCHTP-CNFLPDNLLWNSLRDWLSRDVTALSHLHSNN--IVHDDLKPANIFTTSDWT  260 (524)
T ss_pred             cccCC--cceeeecccc-chhHHhhhcc-cccCCchhhhhHHhhhhhcccccccccCCCc--ccccccchhheecccccc
Confidence            77776  5688888885 6888887632 222333334444555555    999999998  9999999999999999 8


Q ss_pred             ceEecccCchhhhhhhhhhc--------------ccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHH
Q 006019          515 AAKLSDLSFWNEIAMAEMAA--------------TSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAA  580 (664)
Q Consensus       515 ~~kl~DfGla~~~~~~~~~~--------------~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~  580 (664)
                      ..+++|||+...+.......              .++|. ..+.++.++|+||+|.+.+|-.+|......  +....|.+
T Consensus       261 s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~-~~~l~~~~~di~sl~ev~l~~~l~~~~~~~--g~~~~W~~  337 (524)
T KOG0601|consen  261 SCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKEL-LNGLATFASDIFSLGEVILEAILGSHLPSV--GKNSSWSQ  337 (524)
T ss_pred             eeecCCcceeEEccCCccccceeeeecCCCCceEeChhh-hccccchHhhhcchhhhhHhhHhhcccccC--CCCCCccc
Confidence            89999999877664433211              11221 233467789999999999999998766421  11111211


Q ss_pred             HHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          581 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       581 ~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                              +.....+  .++.+....++...+...++.+|..|++.+.+..
T Consensus       338 --------~r~~~ip--~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~~  378 (524)
T KOG0601|consen  338 --------LRQGYIP--LEFCEGGSSSLRSVTSQMLDEDPRLRLTAQILTA  378 (524)
T ss_pred             --------cccccCc--hhhhcCcchhhhhHHHHhcCcchhhhhHHHHHhc
Confidence                    1111110  0111222234555788899999999998776543

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.83  E-value=2.8e-09  Score=114.30  Aligned_cols=236  Identities=16%  Similarity=0.174  Sum_probs=159.2

Q ss_pred             cccccCCCeEEEEEEEC--CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeEEEE
Q 006019          376 NVIGSSPIGTVYKGTLS--NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~--~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      ..||.|.|+.|++...+  ++..+++|.+.......   .....-..|+.+...+ .|.++++....+.+..  ..++--
T Consensus       271 ~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~---~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r--~~~ip~  345 (524)
T KOG0601|consen  271 SKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATF---ASDIFSLGEVILEAILGSHLPSVGKNSSWSQLR--QGYIPL  345 (524)
T ss_pred             EEccCCccccceeeeecCCCCceEeChhhhccccch---HhhhcchhhhhHhhHhhcccccCCCCCCccccc--cccCch
Confidence            67999999999998743  57788888776443322   1111223455555555 4888888766666555  457899


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCC-CceEecccCchhhhhhhh
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED-YAAKLSDLSFWNEIAMAE  531 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~-~~~kl~DfGla~~~~~~~  531 (664)
                      ||++++++....  .....++...++++..+++.++.++|+..  ++|+|+||+||++..+ +..+++|||.+..+....
T Consensus       346 e~~~~~s~~l~~--~~~~~~d~~~~~~~~~q~~~~l~~i~s~~--~~~~d~~psni~i~~~~~~~~~~~~~~~t~~~~~~  421 (524)
T KOG0601|consen  346 EFCEGGSSSLRS--VTSQMLDEDPRLRLTAQILTALNVIHSKL--FVHLDVKPSNILISNDGFFSKLGDFGCWTRLAFSS  421 (524)
T ss_pred             hhhcCcchhhhh--HHHHhcCcchhhhhHHHHHhccccccchh--hhcccccccceeeccchhhhhccccccccccceec
Confidence            999999987665  34456777888899999999999999888  9999999999999986 888999999886432111


Q ss_pred             -----h--hc-ccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          532 -----M--AA-TSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       532 -----~--~~-~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                           .  .+ ..+..........+.|+||||.-+.|.+||..-- .   ...+|.           .+........+..
T Consensus       422 ~~~~~~~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~ls-~---~~~~~~-----------~i~~~~~p~~~~~  486 (524)
T KOG0601|consen  422 GVFHHIDRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSPLS-E---SGVQSL-----------TIRSGDTPNLPGL  486 (524)
T ss_pred             ccccccccccccchhhccccccccccccccccccccccccCcccC-c---ccccce-----------eeecccccCCCch
Confidence                 0  11 1122222334567899999999999999976421 1   111111           1111111111222


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAAILREI  636 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i  636 (664)
                      . ..+..+.......++..||.+.++....+..
T Consensus       487 ~-~~~q~~~kv~~~~~~~~~~l~~~l~~~~~~~  518 (524)
T KOG0601|consen  487 K-LQLQVLLKVMINPDRKRRPSAVELSLHSEFY  518 (524)
T ss_pred             H-HhhhhhhhhhcCCccccchhhhhhcccchhh
Confidence            2 5566778888889999999998877655543

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=98.81  E-value=2.7e-08  Score=107.87  Aligned_cols=159  Identities=17%  Similarity=0.187  Sum_probs=111.0

Q ss_pred             ECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEecCCCChhhhhcccCCC
Q 006019          391 LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESE  470 (664)
Q Consensus       391 ~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~  470 (664)
                      -.++.+|.|...+....     .......+-++.|+.+|||||++++......+  ..|||+|-+.  -|..++...   
T Consensus        34 k~~~~~vsVF~~~~~~~-----~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~--~~ylvTErV~--Pl~~~lk~l---  101 (690)
T KOG1243|consen   34 KADGGPVSVFVYKRSNG-----EVTELAKRAVKRLKTLRHPNILSYLDTTEEEG--TLYLVTERVR--PLETVLKEL---  101 (690)
T ss_pred             eccCCceEEEEEeCCCc-----hhhHHHHHHHHHhhhccCchhhhhhhhhcccC--ceEEEeeccc--cHHHHHHHh---
Confidence            34678888887765432     12345667788999999999999999988777  7799999874  344444321   


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhh-cCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhhhhhccc---ccccCCCCCC
Q 006019          471 HLDWGMRLRIAMGMAYCLEHMH-QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATS---KKLSSAPSAS  546 (664)
Q Consensus       471 ~l~~~~~~~ia~~ia~gL~yLH-~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~~~~~~~---pe~~~~~~~s  546 (664)
                        .-....-.+.+|+.||.||| +++  ++|++|.-..|++++.|+-||++|-+.............   -+.+..+.--
T Consensus       102 --~~~~v~~Gl~qIl~AL~FL~~d~~--lvHgNv~~~SVfVn~~GeWkLggle~v~~~~~~~~~~~~~~~~~s~~~P~~~  177 (690)
T KOG1243|consen  102 --GKEEVCLGLFQILAALSFLNDDCN--LVHGNVCKDSVFVNESGEWKLGGLELVSKASGFNAPAKSLYLIESFDDPEEI  177 (690)
T ss_pred             --HHHHHHHHHHHHHHHHHHHhccCC--eeeccEeeeeEEEcCCCcEEEeeeEEEeccccCCcccccchhhhcccChhhc
Confidence              23334446789999999997 688  999999999999999999999999775443222110000   0011111111


Q ss_pred             c----CCcchhhHHHHHHHHhCC
Q 006019          547 L----ESNVYNFGVLLFEMVTGR  565 (664)
Q Consensus       547 ~----ksDVySfGvvl~El~tG~  565 (664)
                      .    .-|.|-||+++||++.|.
T Consensus       178 ~~s~~s~D~~~Lg~li~el~ng~  200 (690)
T KOG1243|consen  178 DPSEWSIDSWGLGCLIEELFNGS  200 (690)
T ss_pred             CccccchhhhhHHHHHHHHhCcc
Confidence            1    249999999999999993

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.77  E-value=1.3e-09  Score=110.21  Aligned_cols=108  Identities=26%  Similarity=0.400  Sum_probs=81.9

Q ss_pred             EEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCccc--------------------
Q 006019           75 VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS--------------------  134 (664)
Q Consensus        75 v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~--------------------  134 (664)
                      |+.+.+++|.++ -+|..+..+++|..|+|++|-+. .+|.+++.+..|+.||+|.|+|.                    
T Consensus       414 vT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~n  491 (565)
T KOG0472|consen  414 VTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNN  491 (565)
T ss_pred             HHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccc
Confidence            455556655544 56677777888888888877776 67777777777888888877764                    


Q ss_pred             --ccCCcc-ccCCcccceeecccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          135 --GPLPND-LGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       135 --g~ip~~-~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                        |.+|++ +.++.+|..|||.+|.+. +||+.++++++|++|.+++|.|.  .|.
T Consensus       492 qi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr  544 (565)
T KOG0472|consen  492 QIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPR  544 (565)
T ss_pred             cccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CCH
Confidence              233333 777888999999999887 88999999999999999999998  454

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.76  E-value=7.3e-08  Score=91.82  Aligned_cols=130  Identities=15%  Similarity=0.189  Sum_probs=82.7

Q ss_pred             EEEEEEECCCcEEEEEEeeecccC---------------------CCchhHHHHHHHHHHHHhccCCC--cccceEEEEe
Q 006019          385 TVYKGTLSNGVEIAVASVSVASAK---------------------DWPKNLEVQFRKKIDTLSKVNHK--NFVNLIGFCE  441 (664)
Q Consensus       385 ~Vy~g~~~~~~~vavk~~~~~~~~---------------------~~~~~~~~~f~~E~~~l~~l~H~--niv~l~g~~~  441 (664)
                      .||.|.-.+|..+|||........                     .+.........+|.+.|.++..-  ++.+.+.+. 
T Consensus         1 ~Vy~~~~~~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~vP~p~~~~-   79 (188)
T PF01163_consen    1 DVYHAIDPDGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPVPKPYDYN-   79 (188)
T ss_dssp             EEEEEEECTTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS--EEEEE-
T ss_pred             CEEEEECCCCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccCCcEEEEe-
Confidence            489999989999999987653211                     11112234578899999999866  456666543 


Q ss_pred             cCCCceeEEEEEecC--CCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHh-hcCCCCeEEeCcCCCCeEecCCCceEe
Q 006019          442 EEEPFTRMMVFEYAP--NGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM-HQLNPPIAHNYLNSSAVHLTEDYAAKL  518 (664)
Q Consensus       442 ~~~~~~~~lV~Ey~~--~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yL-H~~~~~ivHrDLk~~NILld~~~~~kl  518 (664)
                       .    ..|||||++  +..+..+.. ..   ++......+..++...+..+ |..+  ++|+||.+.|||++++ .+.|
T Consensus        80 -~----~~ivME~I~~~G~~~~~l~~-~~---~~~~~~~~~~~~il~~~~~~~~~~g--ivHGDLs~~NIlv~~~-~~~i  147 (188)
T PF01163_consen   80 -R----NVIVMEYIGEDGVPLPRLKD-VD---LSPEEPKELLEEILEEIIKMLHKAG--IVHGDLSEYNILVDDG-KVYI  147 (188)
T ss_dssp             -T----TEEEEE--EETTEEGGCHHH-CG---GGGSTHHHHHHHHHHHHHHHHHCTT--EEESS-STTSEEEETT-CEEE
T ss_pred             -C----CEEEEEecCCCccchhhHHh-cc---ccchhHHHHHHHHHHHHHHHHHhcC--ceecCCChhhEEeecc-eEEE
Confidence             2    279999998  544433222 11   11233455677777766665 7888  9999999999999988 9999


Q ss_pred             cccCchhhh
Q 006019          519 SDLSFWNEI  527 (664)
Q Consensus       519 ~DfGla~~~  527 (664)
                      +|||.+...
T Consensus       148 IDf~qav~~  156 (188)
T PF01163_consen  148 IDFGQAVDS  156 (188)
T ss_dssp             --GTTEEET
T ss_pred             EecCcceec
Confidence            999976544

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.72  E-value=7e-10  Score=112.23  Aligned_cols=101  Identities=27%  Similarity=0.368  Sum_probs=82.3

Q ss_pred             ccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCcccc-CCcccceeecccCcccccCCccc
Q 006019           87 GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLG-INHSLTILLLDNNDFVGSLSPEI  165 (664)
Q Consensus        87 g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~-~~~~L~~l~l~~N~~~g~iP~~~  165 (664)
                      +++|++++.+.+|..|+|..|.+. .+| +|+.|+.|..|.++.|++. .+|...+ ++.+|.+|||..|++. ..|.++
T Consensus       196 ~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~  271 (565)
T KOG0472|consen  196 ETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEI  271 (565)
T ss_pred             hcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHH
Confidence            467777777777777777777776 566 6777777888888888777 6777766 7889999999999998 899999


Q ss_pred             cCCCCCCEeeCCCCcccccccccccc
Q 006019          166 YKLQVLSESQVDEGQLSSAAKKEQSC  191 (664)
Q Consensus       166 ~~l~~L~~l~l~~n~l~g~~p~~~~~  191 (664)
                      +.+++|++||+|+|.+++-.+..+++
T Consensus       272 clLrsL~rLDlSNN~is~Lp~sLgnl  297 (565)
T KOG0472|consen  272 CLLRSLERLDLSNNDISSLPYSLGNL  297 (565)
T ss_pred             HHhhhhhhhcccCCccccCCcccccc
Confidence            99999999999999999877765444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.69  E-value=3.1e-09  Score=112.23  Aligned_cols=115  Identities=19%  Similarity=0.185  Sum_probs=96.1

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .++..|+|+.|+++.---..+.+|++|+.|+||+|.+.-.-++.+.-+++|+.|+|++|+++.--+.+|..+..|+.|+|
T Consensus       269 ~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL  348 (873)
T KOG4194|consen  269 EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL  348 (873)
T ss_pred             cccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence            36889999999988655567889999999999999999888888999999999999999999666667788888888888


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      +.|+++----..|-.+++|+.|||++|.+++.|-+
T Consensus       349 s~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED  383 (873)
T KOG4194|consen  349 SHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED  383 (873)
T ss_pred             cccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence            88888744444566788888888888888887765

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.69  E-value=2.6e-07  Score=93.45  Aligned_cols=148  Identities=13%  Similarity=0.022  Sum_probs=101.2

Q ss_pred             cccccCCCeEEEEEEECCCcEEEEEEeeecccCCCch------hHHHHHHHHHHHHhccCCCc--ccceEEEEecCC---
Q 006019          376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPK------NLEVQFRKKIDTLSKVNHKN--FVNLIGFCEEEE---  444 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~------~~~~~f~~E~~~l~~l~H~n--iv~l~g~~~~~~---  444 (664)
                      +.+-+-....|++..+ +|+.+.||...........+      .....+.+|...+.+++..+  ....+++.....   
T Consensus        28 e~v~~~~~rrvvr~~~-~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~  106 (268)
T PRK15123         28 EVFRELEGRRTLRFEL-AGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGVDTMTGVAFGERGSNPA  106 (268)
T ss_pred             cEEecCCCceEEEEEE-CCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCc
Confidence            4455445556778777 56788899764322100000      01124778888888885333  445566654321   


Q ss_pred             CceeEEEEEecCCC-ChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecC-------CCce
Q 006019          445 PFTRMMVFEYAPNG-TLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE-------DYAA  516 (664)
Q Consensus       445 ~~~~~lV~Ey~~~G-sL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~-------~~~~  516 (664)
                      ....+||+|++++- +|.+++........+...+..++.+++..++-||+.+  |+|+|++++|||++.       +..+
T Consensus       107 ~~~s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~LH~~G--i~HgDL~~~NiLl~~~~~~~~~~~~~  184 (268)
T PRK15123        107 TRTSFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRDMHAAG--INHRDCYICHFLLHLPFPGREEDLKL  184 (268)
T ss_pred             cceeEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHCc--CccCCCChhhEEEeccccCCCCCceE
Confidence            12468999999876 7888874222234455677789999999999999999  999999999999985       4689


Q ss_pred             EecccCchhh
Q 006019          517 KLSDLSFWNE  526 (664)
Q Consensus       517 kl~DfGla~~  526 (664)
                      .++||+.++.
T Consensus       185 ~LIDl~r~~~  194 (268)
T PRK15123        185 SVIDLHRAQI  194 (268)
T ss_pred             EEEECCcccc
Confidence            9999997753

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.65  E-value=4.1e-09  Score=111.88  Aligned_cols=107  Identities=23%  Similarity=0.358  Sum_probs=78.0

Q ss_pred             cEEEEEeCCCCcccccccc-ccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccc-----------------
Q 006019           74 KVVNLNLKDLCLEGTLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG-----------------  135 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~-~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g-----------------  135 (664)
                      +.+.|+|++|++. +||.. +-+|+.|-.||||+|.+. .+|+.+.+|..|+.|+|++|.|..                 
T Consensus       127 n~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm  204 (1255)
T KOG0444|consen  127 NSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM  204 (1255)
T ss_pred             CcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence            5667777777776 56654 567888888888888886 677778888888888888885422                 


Q ss_pred             --------cCCccccCCcccceeecccCcccccCCccccCCCCCCEeeCCCCcccc
Q 006019          136 --------PLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (664)
Q Consensus       136 --------~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g  183 (664)
                              .+|+++-.+.+|..+|||.|++. .+|.-+.++.+|+.|+||+|+++.
T Consensus       205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite  259 (1255)
T KOG0444|consen  205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE  259 (1255)
T ss_pred             ccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee
Confidence                    36666666777777777777776 667777777777777777777764

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.60  E-value=4.9e-08  Score=111.28  Aligned_cols=40  Identities=18%  Similarity=0.214  Sum_probs=21.5

Q ss_pred             ccceeecccCcccccCCccccCCCCCCEeeCCCCccccccc
Q 006019          146 SLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (664)
Q Consensus       146 ~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p  186 (664)
                      +|+.|+|++|+++ .||..++++++|+.|+|++|+|+|.+|
T Consensus       423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~  462 (788)
T PRK15387        423 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL  462 (788)
T ss_pred             hhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence            3444555555554 455555555555555555555555544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.59  E-value=6.3e-09  Score=110.53  Aligned_cols=110  Identities=17%  Similarity=0.244  Sum_probs=63.0

Q ss_pred             cEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCccc-ccCCccccCCcccceeec
Q 006019           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS-GPLPNDLGINHSLTILLL  152 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~-g~ip~~~~~~~~L~~l~l  152 (664)
                      +++.|.|...+|. .+|.+++.|.+|+.|.++.|++. .+-.++..|+.|+.+++..|+|. .-||+.+..+..|++|||
T Consensus        33 ~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDL  110 (1255)
T KOG0444|consen   33 QMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDL  110 (1255)
T ss_pred             heeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeec
Confidence            4455555444443 45555666666666666666554 23334555556666666666553 236666666666666666


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      |.|++. ..|..+-..+++-+|+||+|++. +||.
T Consensus       111 ShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn  143 (1255)
T KOG0444|consen  111 SHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPN  143 (1255)
T ss_pred             chhhhh-hcchhhhhhcCcEEEEcccCccc-cCCc
Confidence            666665 55666666666666666666664 4553

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.55  E-value=8.2e-07  Score=93.60  Aligned_cols=170  Identities=15%  Similarity=0.205  Sum_probs=124.2

Q ss_pred             CCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEec--CCCceeEEEEEecCC-
Q 006019          382 PIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEE--EEPFTRMMVFEYAPN-  457 (664)
Q Consensus       382 ~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--~~~~~~~lV~Ey~~~-  457 (664)
                      --.+.||+.. .+|..+.+|+++........     ....-+++++++.|.|+|++..++..  .+....++||+|.|+ 
T Consensus       288 ~~~Ttyk~~s~~DG~~YvLkRlhg~r~~~~n-----k~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s  362 (655)
T KOG3741|consen  288 FSITTYKATSNVDGNAYVLKRLHGDRDQSTN-----KDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSS  362 (655)
T ss_pred             ccceeEeeeeccCCceeeeeeeccccccCcc-----cchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCC
Confidence            3457899984 47999999999654433321     23356889999999999999887752  122367999999985 


Q ss_pred             CChhhhhccc-------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCch
Q 006019          458 GTLFEHIHIK-------------ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW  524 (664)
Q Consensus       458 GsL~~~l~~~-------------~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla  524 (664)
                      ++|.+.-...             ............++.|+..||.++|+.+  +.-+-|.+++||++.+.+++|+..|+.
T Consensus       363 ~TL~d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHssG--LAck~L~~~kIlv~G~~RIriS~C~i~  440 (655)
T KOG3741|consen  363 PTLYDLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSSG--LACKTLDLKKILVTGKMRIRISGCGIM  440 (655)
T ss_pred             chHHHHHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhcC--ceeecccHhHeEeeCcceEEEecccce
Confidence            6776643211             1223556777889999999999999999  777999999999999999999999986


Q ss_pred             hhhhhhhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCC
Q 006019          525 NEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRL  566 (664)
Q Consensus       525 ~~~~~~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~  566 (664)
                      ..+....   ..|     -+--.+-|.=.||.+++-|.||..
T Consensus       441 Dvl~~d~---~~~-----le~~Qq~D~~~lG~ll~aLAt~~~  474 (655)
T KOG3741|consen  441 DVLQEDP---TEP-----LESQQQNDLRDLGLLLLALATGTE  474 (655)
T ss_pred             eeecCCC---Ccc-----hhHHhhhhHHHHHHHHHHHhhccc
Confidence            5553222   111     011235799999999999999854

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.53  E-value=8.5e-08  Score=89.92  Aligned_cols=105  Identities=22%  Similarity=0.317  Sum_probs=42.6

Q ss_pred             cEEEEEeCCCCcccccccccc-CCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccc-cCCcccceee
Q 006019           74 KVVNLNLKDLCLEGTLAPEIQ-SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDL-GINHSLTILL  151 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~~~-~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~-~~~~~L~~l~  151 (664)
                      ++..|+|++|.++- |. .++ .|++|+.|+|++|.++. ++ .+..++.|+.|++++|+++ .++..+ ..+++|+.|+
T Consensus        20 ~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred             cccccccccccccc-cc-chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence            56889999998873 43 465 58899999999999984 54 5788999999999999999 466555 4689999999


Q ss_pred             cccCccccc-CCccccCCCCCCEeeCCCCcccc
Q 006019          152 LDNNDFVGS-LSPEIYKLQVLSESQVDEGQLSS  183 (664)
Q Consensus       152 l~~N~~~g~-iP~~~~~l~~L~~l~l~~n~l~g  183 (664)
                      |++|++..- -=..+..+++|+.|+|.+|.++.
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            999999642 11457789999999999998873

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.53  E-value=7.8e-08  Score=73.93  Aligned_cols=59  Identities=34%  Similarity=0.539  Sum_probs=31.0

Q ss_pred             CCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecccCc
Q 006019           98 HIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNND  156 (664)
Q Consensus        98 ~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~N~  156 (664)
                      +|+.|+|++|.++..-+..|..+++|++|++++|+++.--|..|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555553333445555555555555555554444445555555555555554

...

>PRK09902 hypothetical protein; Provisional

Probab=98.52  E-value=1.4e-06  Score=83.67  Aligned_cols=144  Identities=11%  Similarity=0.086  Sum_probs=104.6

Q ss_pred             cccCCCeEEEEEEECCCcEEEEEEeeecccCCCc-hhHHHHHHHHHHHHhccCCC--cccceEEEEe---cCCCceeEEE
Q 006019          378 IGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWP-KNLEVQFRKKIDTLSKVNHK--NFVNLIGFCE---EEEPFTRMMV  451 (664)
Q Consensus       378 iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~-~~~~~~f~~E~~~l~~l~H~--niv~l~g~~~---~~~~~~~~lV  451 (664)
                      -|+||-+.|++-.+.+. .+-+|+-.......+. +.....|.+|...+.++..-  .+.+.. ++.   .+..+..+||
T Consensus        26 ~~rgG~SgV~r~~~~g~-~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pv-f~~~~k~~~~~rA~LV  103 (216)
T PRK09902         26 YRRNGMSGVQCVERNGK-KLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIV-FGEAVKIEGEWRALLV  103 (216)
T ss_pred             cCCCCcceEEEEEeCCc-EEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccc-eeeeeccCCceEEEEE
Confidence            46788888999887544 5777766422222222 33456799999999998533  344444 332   2223357899


Q ss_pred             EEecCC-CChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCc--eEecccCchh
Q 006019          452 FEYAPN-GTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA--AKLSDLSFWN  525 (664)
Q Consensus       452 ~Ey~~~-GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~--~kl~DfGla~  525 (664)
                      +|-+++ -+|.+++........+...+..+..++++.++-||+.+  +.|+|+.+.||+++.++.  ++++||--++
T Consensus       104 Te~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~LH~~G--v~Hgdly~khIll~~~g~~~v~lIDlEk~r  178 (216)
T PRK09902        104 TEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSVN--RQHGCCYVRHIYVKTEGKAEAGFLDLEKSR  178 (216)
T ss_pred             EEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHCC--CcCCCCCHhheeecCCCCeeEEEEEhhccc
Confidence            998863 58888886544456677888999999999999999999  999999999999986666  9999997544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.51  E-value=1.2e-07  Score=100.64  Aligned_cols=108  Identities=20%  Similarity=0.187  Sum_probs=93.4

Q ss_pred             EEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeeccc
Q 006019           75 VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN  154 (664)
Q Consensus        75 v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~  154 (664)
                      +..|+|++|.|+-.-+..+.+|++|+.++|.+|.++ .||...+...+|+.|+|.+|.++.--...+..++.|++||||.
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence            467999999999877788999999999999999998 7998877778899999999999866667788899999999999


Q ss_pred             CcccccCCccccCCCCCCEeeCCCCcccc
Q 006019          155 NDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (664)
Q Consensus       155 N~~~g~iP~~~~~l~~L~~l~l~~n~l~g  183 (664)
                      |.++-.--+++..-.++++|+|++|.++.
T Consensus       159 N~is~i~~~sfp~~~ni~~L~La~N~It~  187 (873)
T KOG4194|consen  159 NLISEIPKPSFPAKVNIKKLNLASNRITT  187 (873)
T ss_pred             chhhcccCCCCCCCCCceEEeeccccccc
Confidence            99984333456677899999999999973

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.49  E-value=9.7e-08  Score=73.41  Aligned_cols=61  Identities=23%  Similarity=0.295  Sum_probs=54.6

Q ss_pred             CCCCEEEeecCcccccCCccccCCcccceeecccCcccccCCccccCCCCCCEeeCCCCcc
Q 006019          121 EELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQL  181 (664)
Q Consensus       121 ~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l  181 (664)
                      ++|+.|+|++|+++.--+..+..+++|++|++++|.++.--|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5799999999999955446788999999999999999977777899999999999999986

...

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.49  E-value=9.9e-07  Score=101.24  Aligned_cols=99  Identities=23%  Similarity=0.358  Sum_probs=66.4

Q ss_pred             EEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecccC
Q 006019           76 VNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN  155 (664)
Q Consensus        76 ~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~N  155 (664)
                      +.|+|++++|+ .+|..+.  +.|+.|+|++|.|+ .+|..+.  ++|+.|+|++|+|+ .+|..+.  .+|+.|+|++|
T Consensus       181 ~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N  251 (754)
T PRK15370        181 TELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSIN  251 (754)
T ss_pred             eEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCC
Confidence            46677777766 3665443  46788888888887 5666554  47888888888877 5676543  35777777777


Q ss_pred             cccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          156 DFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       156 ~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      ++. .||..+.  .+|+.|++++|+++. +|.
T Consensus       252 ~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~  279 (754)
T PRK15370        252 RIT-ELPERLP--SALQSLDLFHNKISC-LPE  279 (754)
T ss_pred             ccC-cCChhHh--CCCCEEECcCCccCc-ccc
Confidence            776 6666654  367777777777763 453

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.48  E-value=7.9e-07  Score=87.19  Aligned_cols=136  Identities=18%  Similarity=0.197  Sum_probs=93.4

Q ss_pred             hhhcccccCCCeEEEEEEECCCcEEEEEEeeeccc-----------------CCCchhHHHHHHHHHHHHhccCCC--cc
Q 006019          373 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASA-----------------KDWPKNLEVQFRKKIDTLSKVNHK--NF  433 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~-----------------~~~~~~~~~~f~~E~~~l~~l~H~--ni  433 (664)
                      .+++.||.|-=+.||.|..+.|.+++||.=+....                 .+|.-.......+|.+.|.++.-.  .+
T Consensus        94 ~iG~~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~~V  173 (304)
T COG0478          94 AIGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGVKV  173 (304)
T ss_pred             hhccccccCccceEEEEECCCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCCCC
Confidence            46689999999999999999999999986543221                 111122234567899999998654  56


Q ss_pred             cceEEEEecCCCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCC
Q 006019          434 VNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED  513 (664)
Q Consensus       434 v~l~g~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~  513 (664)
                      .+.+++-      ...+||||+++-.|...-       ++....-.|+..|..-+.-+-..+  +||+|+..-||++++|
T Consensus       174 P~P~~~n------RHaVvMe~ieG~eL~~~r-------~~~en~~~il~~il~~~~~~~~~G--iVHGDlSefNIlV~~d  238 (304)
T COG0478         174 PKPIAWN------RHAVVMEYIEGVELYRLR-------LDVENPDEILDKILEEVRKAYRRG--IVHGDLSEFNILVTED  238 (304)
T ss_pred             CCccccc------cceeeeehcccceeeccc-------CcccCHHHHHHHHHHHHHHHHHcC--ccccCCchheEEEecC
Confidence            6665542      337999999986665432       112222233344444343333556  9999999999999999


Q ss_pred             CceEecccCc
Q 006019          514 YAAKLSDLSF  523 (664)
Q Consensus       514 ~~~kl~DfGl  523 (664)
                      +.+.++||-=
T Consensus       239 g~~~vIDwPQ  248 (304)
T COG0478         239 GDIVVIDWPQ  248 (304)
T ss_pred             CCEEEEeCcc
Confidence            9999999953

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.40  E-value=1.9e-08  Score=111.88  Aligned_cols=106  Identities=25%  Similarity=0.378  Sum_probs=96.7

Q ss_pred             cEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCc-ccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPE-GFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~-~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+..|.|.+|.|+-..-|.+-+..+|+.|+|++|.+. .+|. .+.++..|+.|+||+|.|+ .+|..+.++..|++|..
T Consensus       360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a  437 (1081)
T KOG0618|consen  360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA  437 (1081)
T ss_pred             HHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence            6788999999999888888999999999999999996 6775 5789999999999999999 89999999999999999


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCcccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g  183 (664)
                      .+|++. .+| ++.+++.|+.+|+|.|+|+-
T Consensus       438 hsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  438 HSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             cCCcee-ech-hhhhcCcceEEecccchhhh
Confidence            999998 778 89999999999999999974

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.40  E-value=1.1e-06  Score=96.24  Aligned_cols=148  Identities=16%  Similarity=0.206  Sum_probs=96.6

Q ss_pred             hhh-cccccCCCeEEEEEEECCCcEEEEEEeeecccCCCc-------------------------hh----------HHH
Q 006019          373 DFS-NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWP-------------------------KN----------LEV  416 (664)
Q Consensus       373 ~~~-~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~-------------------------~~----------~~~  416 (664)
                      +|. +.|+.++-|.||+|++++|+.||||+..........                         ..          .+-
T Consensus       127 eF~~~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~El  206 (517)
T COG0661         127 EFEPEPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREEL  206 (517)
T ss_pred             HcCCCchhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHh
Confidence            455 679999999999999999999999987653322110                         00          012


Q ss_pred             HHHHHHHHHhccC----CCcccceEEEEec-CCCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHH-
Q 006019          417 QFRKKIDTLSKVN----HKNFVNLIGFCEE-EEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEH-  490 (664)
Q Consensus       417 ~f~~E~~~l~~l~----H~niv~l~g~~~~-~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~y-  490 (664)
                      +|.+|..-+.+++    +..=+++=.+|++ ..  ...|+|||++|-.+.+....+. ...+   +..|+..++++.-. 
T Consensus       207 Dy~~EA~n~~~~~~nf~~~~~v~VP~V~we~t~--~~VLtmE~i~Gi~i~d~~~l~~-~g~d---~k~ia~~~~~~f~~q  280 (517)
T COG0661         207 DYRREAANAERFRENFKDDPDVYVPKVYWEYTT--RRVLTMEWIDGIKISDIAALKS-AGID---RKELAELLVRAFLRQ  280 (517)
T ss_pred             CHHHHHHHHHHHHHHcCCCCCeEeceeehhccC--CcEEEEEeeCCEecccHHHHHh-cCCC---HHHHHHHHHHHHHHH
Confidence            3555666665552    2222333334432 22  4589999999988888743222 3344   34455555443222 


Q ss_pred             hhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          491 MHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       491 LH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      +-..+  ++|.|..|.||+++.++..-+-|||+...+.
T Consensus       281 ~~~dg--ffHaDpHpGNi~v~~~g~i~~lDfGi~g~l~  316 (517)
T COG0661         281 LLRDG--FFHADPHPGNILVRSDGRIVLLDFGIVGRLD  316 (517)
T ss_pred             HHhcC--ccccCCCccceEEecCCcEEEEcCcceecCC
Confidence            22345  9999999999999999999999999976653

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.37  E-value=6e-07  Score=103.03  Aligned_cols=101  Identities=21%  Similarity=0.333  Sum_probs=85.4

Q ss_pred             cEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecc
Q 006019           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~  153 (664)
                      .++.|+|++|.|+ .+|..+.  .+|+.|+|++|.|+ .+|..+.  .+|+.|+|++|++. .+|..+.  .+|+.|+|+
T Consensus       200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls  270 (754)
T PRK15370        200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLF  270 (754)
T ss_pred             CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence            5789999999999 5887665  58999999999998 6787664  47999999999998 7888774  589999999


Q ss_pred             cCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       154 ~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      +|+++ .+|..+.  ++|+.|++++|+|++ +|.
T Consensus       271 ~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~  300 (754)
T PRK15370        271 HNKIS-CLPENLP--EELRYLSVYDNSIRT-LPA  300 (754)
T ss_pred             CCccC-ccccccC--CCCcEEECCCCcccc-Ccc
Confidence            99999 6888775  589999999999985 443

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.37  E-value=4.6e-06  Score=81.43  Aligned_cols=108  Identities=19%  Similarity=0.229  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHhccCC--CcccceEEEEecCCC--ceeEEEEEecCCC-ChhhhhcccCCCCCCHHHHHHHHHHHHHHHHH
Q 006019          416 VQFRKKIDTLSKVNH--KNFVNLIGFCEEEEP--FTRMMVFEYAPNG-TLFEHIHIKESEHLDWGMRLRIAMGMAYCLEH  490 (664)
Q Consensus       416 ~~f~~E~~~l~~l~H--~niv~l~g~~~~~~~--~~~~lV~Ey~~~G-sL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~y  490 (664)
                      ....+|...+.+++.  -...+.+++......  ...++|+|++++- +|.+++....  ..+...+..++.+++..++-
T Consensus        56 ~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~--~~~~~~~~~ll~~l~~~i~~  133 (206)
T PF06293_consen   56 SRAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWE--QLDPSQRRELLRALARLIAK  133 (206)
T ss_pred             hHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhc--ccchhhHHHHHHHHHHHHHH
Confidence            457778887777753  345667777665321  2458999999874 7888886322  25666788899999999999


Q ss_pred             hhcCCCCeEEeCcCCCCeEecCCC---ceEecccCchhhh
Q 006019          491 MHQLNPPIAHNYLNSSAVHLTEDY---AAKLSDLSFWNEI  527 (664)
Q Consensus       491 LH~~~~~ivHrDLk~~NILld~~~---~~kl~DfGla~~~  527 (664)
                      ||+.+  |+|+|++++|||++.+.   .+.++||+.++..
T Consensus       134 lH~~g--i~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~~  171 (206)
T PF06293_consen  134 LHDAG--IYHGDLNPSNILVDPDDGQYRFYLIDLDRMRFR  171 (206)
T ss_pred             HHHCc--CCCCCCCcccEEEeCCCCceeEEEEcchhceeC
Confidence            99999  99999999999999887   8999999876543

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=98.37  E-value=5.7e-06  Score=79.19  Aligned_cols=103  Identities=21%  Similarity=0.242  Sum_probs=80.7

Q ss_pred             HHHHHHHhccCC-CcccceEEEEecCCCceeEEEEEecCCCChhhhhcc-cCCCCCCHHHHHHHHHHHHHHHHHhhc-CC
Q 006019          419 RKKIDTLSKVNH-KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHI-KESEHLDWGMRLRIAMGMAYCLEHMHQ-LN  495 (664)
Q Consensus       419 ~~E~~~l~~l~H-~niv~l~g~~~~~~~~~~~lV~Ey~~~GsL~~~l~~-~~~~~l~~~~~~~ia~~ia~gL~yLH~-~~  495 (664)
                      ..|.-+|+.+++ +++.+++|+|      ..++|.||...+++.+.-.. ..-..-+|..|.+||.++++.+.++++ ..
T Consensus         7 ~~E~lll~~l~~~~~~pk~lG~C------G~~~v~E~~~~~~~~~~~~~l~~~~~~~w~~R~~iA~~lL~~l~~l~~~~~   80 (188)
T PF12260_consen    7 NNEPLLLQLLQGSEPFPKLLGSC------GRFYVVEYVGAGSLYGIYRPLSQFLQSPWEQRAKIALQLLELLEELDHGPL   80 (188)
T ss_pred             ccHHHHHHHcCCCCCCCCeeeEC------CCEEEEEeecCccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCC
Confidence            357788888876 6999999999      23789999998877532100 112347899999999999999999954 22


Q ss_pred             CCeEEeCcCCCCeEecCCCceEecccCchhhh
Q 006019          496 PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       496 ~~ivHrDLk~~NILld~~~~~kl~DfGla~~~  527 (664)
                      -.+.-+|++++|+-+++++.+|+.|.......
T Consensus        81 ~~~~lcDv~~~nfgv~~~~~lk~iDld~v~~~  112 (188)
T PF12260_consen   81 GFFYLCDVSPDNFGVNDDGRLKLIDLDDVFVE  112 (188)
T ss_pred             CcEEEeecchHHeEEeCCCcEEEEechhcchh
Confidence            23999999999999999999999999865444

Proteins in this uncharacterised family are described as transmembrane proteins.

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=98.32  E-value=1.4e-07  Score=106.66  Aligned_cols=234  Identities=16%  Similarity=0.140  Sum_probs=136.5

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      +-+-+|.++.++-+.=. .|...+.|.......-.  ....+..+.+-.+.-..+||-+++..--+....  ..+||++|
T Consensus       810 ~p~qS~sp~ss~p~~pa~sgh~~~~~v~~~ap~i~--~~~~~s~r~~s~~~i~p~~P~v~~~~~s~~~rs--P~~L~~~~  885 (1205)
T KOG0606|consen  810 KPSQSGSPSSSFPASPAGSGHTRPSKVHGLAPKIR--TNDYESIRSKSNILITPRSPAVVRSFPSFPCRS--PLPLVGHY  885 (1205)
T ss_pred             ccccCCCCcccccCCccccccccchhhhccchhhc--cccccccCCccCccccCCCCceecccCCCCCCC--CcchhhHH
Confidence            45677888888766521 23222222221111100  001112222222233334555554433222223  35899999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh----
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA----  530 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~----  530 (664)
                      ..+++|...||...  ..+..........+...++|||...  +.|||++|.|.|...++..+++|||........    
T Consensus       886 ~~~~~~~Skl~~~~--~~saepaRs~i~~~vqs~e~L~s~~--r~h~~~~p~~~l~~~~gh~~l~~~~t~~~vg~~~p~~  961 (1205)
T KOG0606|consen  886 LNGGDLPSKLHNSG--CLSAEPARSPILERVQSLESLHSSL--RKHRDLKPDSLLIAYDGHRPLTDFGTLSKVGLIPPTT  961 (1205)
T ss_pred             hccCCchhhhhcCC--CcccccccchhHHHHhhhhccccch--hhcccccccchhhcccCCcccCccccccccccccCcC
Confidence            99999999998432  3333333334456677899999876  899999999999999999999999843322100    


Q ss_pred             ------------------------------------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCC
Q 006019          531 ------------------------------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGS  574 (664)
Q Consensus       531 ------------------------------------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~  574 (664)
                                                          ...+.+||...+......+|.|++|++++|.++|..||...  .
T Consensus       962 ~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~pp~na~--t 1039 (1205)
T KOG0606|consen  962 DLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGIPPFNAE--T 1039 (1205)
T ss_pred             CcccccccCccccccccccccccccchhhccccccCCCcccCCcccccccCCCcchhhhhhhhhhhhhcCCCCCCCc--c
Confidence                                                00011234444445567789999999999999999998322  1


Q ss_pred             hHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHH
Q 006019          575 LEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMR  627 (664)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~  627 (664)
                      ..+.++.+....        ......+.+...+..+++.+-+..+|.+|-.|.
T Consensus      1040 pq~~f~ni~~~~--------~~~p~g~~~~s~~aq~~~~~ll~~~~~qr~~a~ 1084 (1205)
T KOG0606|consen 1040 PQQIFENILNRD--------IPWPEGPEEGSYEAQDLINRLLTEEPTQRLGAK 1084 (1205)
T ss_pred             hhhhhhccccCC--------CCCCCCccccChhhhhhhhhhhccCchhccCcc
Confidence            222221111111        111122334445677888888899999997765

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.29  E-value=1.2e-07  Score=105.65  Aligned_cols=105  Identities=19%  Similarity=0.277  Sum_probs=92.6

Q ss_pred             CcEEEEEeCCCCccccccc-cccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceee
Q 006019           73 GKVVNLNLKDLCLEGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~-~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~  151 (664)
                      .++..|+|+.|+|. ++|. .+.+|..|+.|+||+|.+. .+|..+.++..|++|...+|++. .+| .+..++.|+++|
T Consensus       383 ~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lD  458 (1081)
T KOG0618|consen  383 KHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLD  458 (1081)
T ss_pred             cceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEe
Confidence            47999999999987 5665 4899999999999999998 89999999999999999999999 688 899999999999


Q ss_pred             cccCcccccCCccccCCCCCCEeeCCCCcc
Q 006019          152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQL  181 (664)
Q Consensus       152 l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l  181 (664)
                      ++.|+++-..-+..-..++|++|||++|.-
T Consensus       459 lS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  459 LSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             cccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            999999755444444559999999999973

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.27  E-value=2.5e-07  Score=96.82  Aligned_cols=112  Identities=25%  Similarity=0.351  Sum_probs=82.7

Q ss_pred             CcEEEEEeCCCCccccccccccCCCC---CCEEEccCCcccc----cCCcccCCC-CCCCEEEeecCccccc----CCcc
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTH---IKSIILRNNSFSG----IIPEGFGEL-EELEVLDFGHNNFSGP----LPND  140 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~---L~~l~L~~N~l~g----~ip~~~~~l-~~L~~L~l~~N~l~g~----ip~~  140 (664)
                      .+++.|+|+++.+.+..+..+..+..   |+.|++++|.+++    .+...+..+ ++|+.|+|++|.+++.    ++..
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            47888888888888766666666655   8888888888873    344455666 7888888888888853    3344


Q ss_pred             ccCCcccceeecccCcccc----cCCccccCCCCCCEeeCCCCccccc
Q 006019          141 LGINHSLTILLLDNNDFVG----SLSPEIYKLQVLSESQVDEGQLSSA  184 (664)
Q Consensus       141 ~~~~~~L~~l~l~~N~~~g----~iP~~~~~l~~L~~l~l~~n~l~g~  184 (664)
                      +..+++|++|+|++|.+++    .++..+..+++|++|++++|.+++.
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  208 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE  208 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH
Confidence            5566788888888888874    3455566677888888888888743

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.27  E-value=2.1e-06  Score=98.25  Aligned_cols=97  Identities=27%  Similarity=0.350  Sum_probs=51.0

Q ss_pred             EEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCcccc------------
Q 006019           75 VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLG------------  142 (664)
Q Consensus        75 v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~------------  142 (664)
                      -..|+|++++|+ .+|+.+.  .+|+.|+|++|+|+. +|..   +++|++|+|++|+|+ .+|....            
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N~Lt-sLP~lp~sL~~L~Ls~N~L  274 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPAL---PPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPL  274 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCCC---CCCCcEEEecCCccC-cccCcccccceeeccCCch
Confidence            345566666655 4555443  245555555555552 4432   345555555555555 3442211            


Q ss_pred             -----CCcccceeecccCcccccCCccccCCCCCCEeeCCCCcccc
Q 006019          143 -----INHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (664)
Q Consensus       143 -----~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g  183 (664)
                           ...+|+.|+|++|+++ .+|..   .++|+.|+|++|+|++
T Consensus       275 ~~Lp~lp~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~  316 (788)
T PRK15387        275 THLPALPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS  316 (788)
T ss_pred             hhhhhchhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc
Confidence                 1133455555555555 34432   3567788888888776

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.25  E-value=3.4e-07  Score=95.85  Aligned_cols=110  Identities=22%  Similarity=0.394  Sum_probs=88.9

Q ss_pred             cEEEEEeCCCCccc----cccccccCC-CCCCEEEccCCccccc----CCcccCCCCCCCEEEeecCccccc----CCcc
Q 006019           74 KVVNLNLKDLCLEG----TLAPEIQSL-THIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGP----LPND  140 (664)
Q Consensus        74 ~v~~l~L~~~~l~g----~ip~~~~~l-~~L~~l~L~~N~l~g~----ip~~~~~l~~L~~L~l~~N~l~g~----ip~~  140 (664)
                      +++.|++++|.+++    .+...+..+ ++|+.|+|++|.+++.    ++..+..+++|+.|+|++|++++.    ++..
T Consensus       109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~  188 (319)
T cd00116         109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG  188 (319)
T ss_pred             cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence            49999999999883    344456777 8999999999999953    455677788999999999999853    4445


Q ss_pred             ccCCcccceeecccCccccc----CCccccCCCCCCEeeCCCCcccc
Q 006019          141 LGINHSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLSS  183 (664)
Q Consensus       141 ~~~~~~L~~l~l~~N~~~g~----iP~~~~~l~~L~~l~l~~n~l~g  183 (664)
                      +..+++|+.|+|++|.+++.    ++..+..+++|++|++++|.+++
T Consensus       189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence            56677999999999999743    45566788999999999999986

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=98.24  E-value=2.5e-06  Score=104.31  Aligned_cols=111  Identities=22%  Similarity=0.236  Sum_probs=67.9

Q ss_pred             cEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecc
Q 006019           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~  153 (664)
                      +++.|+|.++.+. .++..+..+++|+.|+|++|..-+.+|. ++.+++|+.|+|++|.....+|..++++++|+.|+++
T Consensus       612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~  689 (1153)
T PLN03210        612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS  689 (1153)
T ss_pred             CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence            4556666666554 4555566666666666666554455553 5666666666666665555666666666666666666


Q ss_pred             cCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       154 ~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      +|..-+.+|..+ ++++|+.|++++|...+.+|.
T Consensus       690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~  722 (1153)
T PLN03210        690 RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD  722 (1153)
T ss_pred             CCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc
Confidence            655555666554 566666666666655555553

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.24  E-value=1.7e-07  Score=95.17  Aligned_cols=123  Identities=24%  Similarity=0.336  Sum_probs=100.7

Q ss_pred             CCCCCccce-----eEecCC-----------cEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCC
Q 006019           59 ENNPCSWFG-----VECSDG-----------KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEE  122 (664)
Q Consensus        59 ~~~~C~w~g-----v~C~~~-----------~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~  122 (664)
                      .+.||.-.+     |.|+..           ..+.|+|..|+++-.-|.++..+.+|+.|||++|.++-.-|..|..|.+
T Consensus        37 CP~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~  116 (498)
T KOG4237|consen   37 CPAPCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLAS  116 (498)
T ss_pred             CCCCcccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHh
Confidence            345665544     788742           4589999999999544556899999999999999999888999999999


Q ss_pred             CCEEEeec-CcccccCC-ccccCCcccceeecccCcccccCCccccCCCCCCEeeCCCCccc
Q 006019          123 LEVLDFGH-NNFSGPLP-NDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS  182 (664)
Q Consensus       123 L~~L~l~~-N~l~g~ip-~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~  182 (664)
                      |..|-+.+ |+++ .+| ..|+++.+|+-|.+.-|++.-.....+..+++|..|.+..|.+.
T Consensus       117 l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q  177 (498)
T KOG4237|consen  117 LLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ  177 (498)
T ss_pred             hhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh
Confidence            88876666 8888 566 45788999999999999999777788889999999999998885

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.21  E-value=2.2e-07  Score=98.50  Aligned_cols=106  Identities=24%  Similarity=0.306  Sum_probs=85.6

Q ss_pred             cEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecc
Q 006019           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~  153 (664)
                      .+..|-+++|+++ .+|.+++.+..|..||.+.|.+. .+|+.++.+.+|+.|++..|++. .+|..+..| .|..||+|
T Consensus       144 pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfS  219 (722)
T KOG0532|consen  144 PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFS  219 (722)
T ss_pred             cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecc
Confidence            3566667777766 57778888888888888888886 67778888888888888888888 678888744 48889999


Q ss_pred             cCcccccCCccccCCCCCCEeeCCCCccccc
Q 006019          154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  184 (664)
Q Consensus       154 ~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~  184 (664)
                      .|+++ .||..|.+++.|++|.|.+|-|...
T Consensus       220 cNkis-~iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  220 CNKIS-YLPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             cCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence            99988 8999999999999999999998753

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=98.15  E-value=1e-05  Score=88.44  Aligned_cols=163  Identities=15%  Similarity=0.161  Sum_probs=104.0

Q ss_pred             hcCCCCCCHHHHHHHHh------------hhh-cccccCCCeEEEEEEECCCcEEEEEEeeecccCCCc-----------
Q 006019          356 VTGVPKLKRSELEAACE------------DFS-NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWP-----------  411 (664)
Q Consensus       356 ~~~~~~~~~~el~~~~~------------~~~-~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~-----------  411 (664)
                      ....|.++.+|+.+.-+            .|+ +.||.-+.|.||+|++++|..||||+-+....+...           
T Consensus       134 qD~~Pp~~~ee~~~i~e~ElG~~ie~if~~f~~~piaaASlaQVhrA~L~~G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~  213 (538)
T KOG1235|consen  134 QDQAPPFPWEEAFKIFEEELGAPIEDIFSEFDEEPIAAASLAQVHRARLKNGEDVAVKVQHPGLEKLIMLDLRNLRLLAK  213 (538)
T ss_pred             hccCCCCCHHHHHHHHHHHhCCCHHHHHHhcCcchhhhcchhheEEEEecCCCEEEEEecCcChHHHHHHHHHHHHHHHH
Confidence            34567777776554432            344 679999999999999999999999986543322110           


Q ss_pred             ---------------hh------HHHHHHHHHHHHhcc----CCCc------ccceEEEEecCCCceeEEEEEecCCCCh
Q 006019          412 ---------------KN------LEVQFRKKIDTLSKV----NHKN------FVNLIGFCEEEEPFTRMMVFEYAPNGTL  460 (664)
Q Consensus       412 ---------------~~------~~~~f~~E~~~l~~l----~H~n------iv~l~g~~~~~~~~~~~lV~Ey~~~GsL  460 (664)
                                     .+      .+-+|.+|++-..++    +|-+      |.+++-.++.    .+.|+||||+|..+
T Consensus       214 ~l~k~~p~~~~~~lvdE~~~~L~~ELDF~~EA~Nae~~~~~f~~~~~~~~V~VP~Vy~~~st----~RVLtME~~~G~~i  289 (538)
T KOG1235|consen  214 VLQKFFPDFDLVWLVDEIAKSLPQELDFTKEAKNAERFRENFKDFSLLTYVLVPKVYWDLST----KRVLTMEYVDGIKI  289 (538)
T ss_pred             HHHHhCcCCchhhHHHHHHhhhHhhcchHHHHHhHHHHHHHHHhcccccceeCCeehhhcCc----ceEEEEEecCCccC
Confidence                           00      122366666655444    3555      3333322222    46899999999888


Q ss_pred             hhhhcccCCCCCCHHHHHHHHHHHHHHHHHh-hcCCCCeEEeCcCCCCeEecC----CCceEecccCchhhhh
Q 006019          461 FEHIHIKESEHLDWGMRLRIAMGMAYCLEHM-HQLNPPIAHNYLNSSAVHLTE----DYAAKLSDLSFWNEIA  528 (664)
Q Consensus       461 ~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yL-H~~~~~ivHrDLk~~NILld~----~~~~kl~DfGla~~~~  528 (664)
                      .|..... ...++..   .|+..+.++...+ -..+  ++|+|=.|.||+++.    ++++.+-|||+.....
T Consensus       290 ~Dl~~i~-~~gi~~~---~i~~~l~~~~~~qIf~~G--ffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~is  356 (538)
T KOG1235|consen  290 NDLDAID-KRGISPH---DILNKLVEAYLEQIFKTG--FFHADPHPGNILVRPNPEGDEEIVLLDHGLYAVIS  356 (538)
T ss_pred             CCHHHHH-HcCCCHH---HHHHHHHHHHHHHHHhcC--CccCCCCCCcEEEecCCCCCccEEEEccccccccc
Confidence            7754321 2223332   4455554443333 2345  999999999999994    6789999999977664

>PLN03210 Resistant to P

Probab=98.13  E-value=5e-06  Score=101.68  Aligned_cols=108  Identities=22%  Similarity=0.239  Sum_probs=84.5

Q ss_pred             cEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecc
Q 006019           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~  153 (664)
                      ++..|+|++|...+.+|.++++|++|+.|+|++|..-+.+|..+ ++++|+.|+|++|.....+|..   .++|+.|+|+
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls  854 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLS  854 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECC
Confidence            67788888888778888888888888888888876666788766 6888888888887666666643   3578888888


Q ss_pred             cCcccccCCccccCCCCCCEeeCCC-Ccccccccc
Q 006019          154 NNDFVGSLSPEIYKLQVLSESQVDE-GQLSSAAKK  187 (664)
Q Consensus       154 ~N~~~g~iP~~~~~l~~L~~l~l~~-n~l~g~~p~  187 (664)
                      +|.++ .+|.++.++++|+.|+|++ |++.+ +|.
T Consensus       855 ~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~-l~~  887 (1153)
T PLN03210        855 RTGIE-EVPWWIEKFSNLSFLDMNGCNNLQR-VSL  887 (1153)
T ss_pred             CCCCc-cChHHHhcCCCCCEEECCCCCCcCc-cCc
Confidence            88887 6888888888999999888 45543 553

syringae 6; Provisional

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.12  E-value=1.1e-06  Score=95.99  Aligned_cols=139  Identities=18%  Similarity=0.293  Sum_probs=93.5

Q ss_pred             HHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh------------------hhhcccccccCCCC
Q 006019          483 GMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA------------------EMAATSKKLSSAPS  544 (664)
Q Consensus       483 ~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~------------------~~~~~~pe~~~~~~  544 (664)
                      +++.|+.|+|..- .+||+++.|++|.++.++..||+.|+++......                  ...+.+||+.....
T Consensus       107 ~v~dgl~flh~sA-k~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~~~~~  185 (700)
T KOG2137|consen  107 NVADGLAFLHRSA-KVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYLLGTT  185 (700)
T ss_pred             cccchhhhhccCc-ceeecccchhheeeccCcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhhcccc
Confidence            4558999999542 3999999999999999999999999876544321                  12334567776667


Q ss_pred             CCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCC
Q 006019          545 ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRP  624 (664)
Q Consensus       545 ~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RP  624 (664)
                      .+.++|+||+||++|-+..|..+.....+...........        .+-....+..+.+.++.+=+.+.+..++.-||
T Consensus       186 ~~~~sd~fSlG~li~~i~~~gk~i~~a~~~~~~~~~~~~~--------~~~~~~~~s~~~p~el~~~l~k~l~~~~~~rp  257 (700)
T KOG2137|consen  186 NTPASDVFSLGVLIYTIYNGGKSIIAANGGLLSYSFSRNL--------LNAGAFGYSNNLPSELRESLKKLLNGDSAVRP  257 (700)
T ss_pred             ccccccceeeeeEEEEEecCCcchhhccCCcchhhhhhcc--------cccccccccccCcHHHHHHHHHHhcCCcccCc
Confidence            7899999999999999995444432222222221111111        11111223344556788888899999999999


Q ss_pred             CHHHHH
Q 006019          625 TMRDIA  630 (664)
Q Consensus       625 s~~ev~  630 (664)
                      ++.++.
T Consensus       258 ~~~~l~  263 (700)
T KOG2137|consen  258 TLDLLL  263 (700)
T ss_pred             chhhhh
Confidence            776554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.09  E-value=4e-07  Score=96.57  Aligned_cols=101  Identities=29%  Similarity=0.385  Sum_probs=47.3

Q ss_pred             EEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecccC
Q 006019           76 VNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN  155 (664)
Q Consensus        76 ~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~N  155 (664)
                      +.|+|+.|+++ .+|..++.|+ |+.|.+++|++. .+|..++.+..|..||.+.|++. ++|..++.+.+|+.|++..|
T Consensus       124 t~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn  199 (722)
T KOG0532|consen  124 TFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRN  199 (722)
T ss_pred             HHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhh
Confidence            44444444444 3444444443 444444444443 34444444444444444444444 34444444444444444444


Q ss_pred             cccccCCccccCCCCCCEeeCCCCccc
Q 006019          156 DFVGSLSPEIYKLQVLSESQVDEGQLS  182 (664)
Q Consensus       156 ~~~g~iP~~~~~l~~L~~l~l~~n~l~  182 (664)
                      ++. .+|++++ .-.|..||+|.|+++
T Consensus       200 ~l~-~lp~El~-~LpLi~lDfScNkis  224 (722)
T KOG0532|consen  200 HLE-DLPEELC-SLPLIRLDFSCNKIS  224 (722)
T ss_pred             hhh-hCCHHHh-CCceeeeecccCcee
Confidence            444 4444444 223445555555554

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=98.09  E-value=3.5e-05  Score=76.30  Aligned_cols=138  Identities=9%  Similarity=0.037  Sum_probs=81.7

Q ss_pred             cccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCc--ccceEEEEecCCCceeEEEEE
Q 006019          376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN--FVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~n--iv~l~g~~~~~~~~~~~lV~E  453 (664)
                      ..||+|..+.||+.   .+..+++|......       ......+|.++++.+..-.  +.+.++++...+  ...+|||
T Consensus         7 ~~i~~G~t~~~y~~---~~~~~VlR~~~~~~-------~~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~~--~~glv~e   74 (226)
T TIGR02172         7 TQTGEGGNGESYTH---KTGKWMLKLYNPGF-------DKETIKREFDASRKVFSLGIPTPHPFDLVEDGG--RLGLIYE   74 (226)
T ss_pred             eeecCCCCcceeEe---cCCCEEEEeCCCCC-------CHHHHHHHHHHHHHHHHcCCCCCceEEEEecCC--eeeeeee
Confidence            46899999999984   24456666654211       1234688999998886443  456777776655  4578999


Q ss_pred             ecCCCC-hhhh---------------------hcccCCCCCCHHHHH-----HHH------HHHHH-HHHHh--hcCCCC
Q 006019          454 YAPNGT-LFEH---------------------IHIKESEHLDWGMRL-----RIA------MGMAY-CLEHM--HQLNPP  497 (664)
Q Consensus       454 y~~~Gs-L~~~---------------------l~~~~~~~l~~~~~~-----~ia------~~ia~-gL~yL--H~~~~~  497 (664)
                      +++|.. +...                     +|.-.........+.     .+.      ..+.. ...+|  +...+.
T Consensus        75 ~i~G~~~~~~~~~~~~~~~~~l~~~la~~l~~lH~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~  154 (226)
T TIGR02172        75 LIVGKRSFSRIISDNPSRLEEIAKIFAEMAKKLHSTKCDTSTFQSYKEKIRKFIEEKDFVPKDYKEKARAFIKEVPDTST  154 (226)
T ss_pred             ecCCccchhhhhcCCHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCCCCc
Confidence            998863 1111                     221111111111100     000      01111 12233  223446


Q ss_pred             eEEeCcCCCCeEecCCCceEecccCchhh
Q 006019          498 IAHNYLNSSAVHLTEDYAAKLSDLSFWNE  526 (664)
Q Consensus       498 ivHrDLk~~NILld~~~~~kl~DfGla~~  526 (664)
                      ++|+|+.|.||++++++ +.|.||+.+..
T Consensus       155 ~~HgD~~~~Nii~~~~~-~~iIDwe~a~~  182 (226)
T TIGR02172       155 CLHGDFQIGNLITSGKG-TYWIDLGDFGY  182 (226)
T ss_pred             eEecCCCCCcEEEcCCC-cEEEechhcCc
Confidence            89999999999999888 99999987543

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.08  E-value=1.9e-06  Score=80.83  Aligned_cols=87  Identities=31%  Similarity=0.427  Sum_probs=30.1

Q ss_pred             cccCCCCCCEEEccCCcccccCCcccC-CCCCCCEEEeecCcccccCCccccCCcccceeecccCcccccCCcccc-CCC
Q 006019           92 EIQSLTHIKSIILRNNSFSGIIPEGFG-ELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIY-KLQ  169 (664)
Q Consensus        92 ~~~~l~~L~~l~L~~N~l~g~ip~~~~-~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~-~l~  169 (664)
                      .+.+..+++.|+|.+|.++- | +.++ .+.+|+.|+|++|.++ .++ .+..++.|+.|++++|+++ .++..+. .++
T Consensus        14 ~~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp   88 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLP   88 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-T
T ss_pred             cccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCC
Confidence            46677789999999999983 4 3566 5889999999999999 464 5888999999999999999 5665553 689


Q ss_pred             CCCEeeCCCCcccc
Q 006019          170 VLSESQVDEGQLSS  183 (664)
Q Consensus       170 ~L~~l~l~~n~l~g  183 (664)
                      +|+.|+|++|++..
T Consensus        89 ~L~~L~L~~N~I~~  102 (175)
T PF14580_consen   89 NLQELYLSNNKISD  102 (175)
T ss_dssp             T--EEE-TTS---S
T ss_pred             cCCEEECcCCcCCC
Confidence            99999999999974

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.99  E-value=1.3e-06  Score=85.76  Aligned_cols=102  Identities=19%  Similarity=0.279  Sum_probs=58.4

Q ss_pred             EEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeeccc
Q 006019           75 VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN  154 (664)
Q Consensus        75 v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~  154 (664)
                      ++.+||++|.++ .|..+..-++.++.|+||.|.+. .+- .+..|++|+.||||+|.|+ .+-.+-..+.++++|.|++
T Consensus       286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhh
Confidence            455666666555 45555555666666666666665 222 2555666666666666666 3333334555666666666


Q ss_pred             CcccccCCccccCCCCCCEeeCCCCccc
Q 006019          155 NDFVGSLSPEIYKLQVLSESQVDEGQLS  182 (664)
Q Consensus       155 N~~~g~iP~~~~~l~~L~~l~l~~n~l~  182 (664)
                      |.+. ++ +.++++-+|.+||+++|++.
T Consensus       362 N~iE-~L-SGL~KLYSLvnLDl~~N~Ie  387 (490)
T KOG1259|consen  362 NKIE-TL-SGLRKLYSLVNLDLSSNQIE  387 (490)
T ss_pred             hhHh-hh-hhhHhhhhheeccccccchh
Confidence            6553 11 23455666666666666664

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=97.93  E-value=0.00011  Score=75.93  Aligned_cols=168  Identities=19%  Similarity=0.269  Sum_probs=107.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhh--------hhhhhhccccccc
Q 006019          469 SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI--------AMAEMAATSKKLS  540 (664)
Q Consensus       469 ~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~--------~~~~~~~~~pe~~  540 (664)
                      ....+|...++.++.+|.+-+-||..+  .+-+|+.++|+|+++++.+.+.|=......        ......++.||..
T Consensus       111 ~P~~~w~fllrvaRnlA~aFA~lH~~G--h~vGDVn~~~~lVsd~~~V~LVdsDsfqi~~ng~~~~cpVg~~eftPPElQ  188 (637)
T COG4248         111 YPHCAWDFLLRVARNLASAFATLHEHG--HVVGDVNQNSFLVSDDSKVVLVDSDSFQINANGTLHLCPVGVSEFTPPELQ  188 (637)
T ss_pred             CCccccHHHHHHHHHHHHHHHHHHhcC--CcccccCccceeeecCceEEEEcccceeeccCCceEecccCccccCCHHHh
Confidence            456899999999999999999999998  889999999999999999988873221111        1222334455543


Q ss_pred             C-----CCCCCcCCcchhhHHHHHHHHh-CCCCccCC------CCChH-HHHHHHhcCCCC-CccccCCCCCCCC-HHHH
Q 006019          541 S-----APSASLESNVYNFGVLLFEMVT-GRLPYLVD------NGSLE-DWAADYLSGVQP-LQQFVDPTLSSFD-EEQL  605 (664)
Q Consensus       541 ~-----~~~~s~ksDVySfGvvl~El~t-G~~P~~~~------~~~~~-~~~~~~~~~~~~-~~~~~d~~~~~~~-~~~~  605 (664)
                      .     +-..+...|-|.+||++++++. |++||.+-      ....+ +.+......... -.....+-. ..+ .-.+
T Consensus       189 ~~~sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI~~~~~ap~p~E~~Ia~g~f~ya~~~~~g~~p~P~-~~P~~~Lp  267 (637)
T COG4248         189 TLPSFVGFERTANHDNFGLAVLIFHLLFGGRHPYSGIPLISDAPNPLETDIAHGRFAYASDQRRGLKPPPR-SIPLSMLP  267 (637)
T ss_pred             ccccccccCCCccccchhHHHHHHHHHhcCCCCCCcccccCCCCCcchhhhhcceeeechhccCCCCCCCC-CCChhhcC
Confidence            3     3345678999999999999998 59999521      11111 111111110000 000000000 111 1123


Q ss_pred             HHHHHHHHHhccCC--CCCCCCHHHHHHHHHhhhCC
Q 006019          606 ETLGELIKSCVRAD--PEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       606 ~~l~~l~~~Cl~~~--P~~RPs~~ev~~~L~~i~~~  639 (664)
                      ..+..+..+|+...  +.-||+++.-+..|.++...
T Consensus       268 p~vqAlF~qaF~~~~~~~~RP~a~aW~aAl~al~~~  303 (637)
T COG4248         268 PDVQALFQQAFTESGVATPRPTAKAWVAALDALRQQ  303 (637)
T ss_pred             HHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHHHHh
Confidence            45667788898763  56899999999988887643

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=97.88  E-value=0.00016  Score=70.60  Aligned_cols=140  Identities=16%  Similarity=0.172  Sum_probs=90.4

Q ss_pred             cccccCCCeEEEEEEECCCcEEEEEEeeecccCCCc-------------------hhHHHHHHHHHHHHhccC--CCccc
Q 006019          376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWP-------------------KNLEVQFRKKIDTLSKVN--HKNFV  434 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~-------------------~~~~~~f~~E~~~l~~l~--H~niv  434 (664)
                      ..|..|--..||+|.-.++..+|||+.......-..                   .....-..+|..-|+++.  +-.+.
T Consensus        54 g~istGKEA~Vy~a~~~~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~~W~~kEf~NL~R~~eAGVrvP  133 (268)
T COG1718          54 GCISTGKEANVYLAETGDGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVFAWARKEFRNLKRAYEAGVRVP  133 (268)
T ss_pred             eeecCCcceEEEeeccCCCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            357778888999999888999999998764422100                   000111345666666653  44455


Q ss_pred             ceEEEEecCCCceeEEEEEecCCCCh-hhhhcccCCCCCCHHHHHHHHHHHHHHHHHh-hcCCCCeEEeCcCCCCeEecC
Q 006019          435 NLIGFCEEEEPFTRMMVFEYAPNGTL-FEHIHIKESEHLDWGMRLRIAMGMAYCLEHM-HQLNPPIAHNYLNSSAVHLTE  512 (664)
Q Consensus       435 ~l~g~~~~~~~~~~~lV~Ey~~~GsL-~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yL-H~~~~~ivHrDLk~~NILld~  512 (664)
                      +-+++.      ...|||||+..... .-.|.   ...+.......+..++.+.+.-| +..+  +||+||..-|||+. 
T Consensus       134 ~Pi~~~------~nVLvMEfIg~~g~pAP~Lk---Dv~~e~~e~~~~~~~~v~~~~~l~~~a~--LVHgDLSEyNiL~~-  201 (268)
T COG1718         134 EPIAFR------NNVLVMEFIGDDGLPAPRLK---DVPLELEEAEGLYEDVVEYMRRLYKEAG--LVHGDLSEYNILVH-  201 (268)
T ss_pred             Cceeec------CCeEEEEeccCCCCCCCCcc---cCCcCchhHHHHHHHHHHHHHHHHHhcC--cccccchhhheEEE-
Confidence            555544      23799999965311 11121   11122224555666777777777 4577  99999999999999 


Q ss_pred             CCceEecccCchhhh
Q 006019          513 DYAAKLSDLSFWNEI  527 (664)
Q Consensus       513 ~~~~kl~DfGla~~~  527 (664)
                      ++.+.|+|||-+...
T Consensus       202 ~~~p~iID~~QaV~~  216 (268)
T COG1718         202 DGEPYIIDVSQAVTI  216 (268)
T ss_pred             CCeEEEEECcccccc
Confidence            999999999965443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.84  E-value=7e-06  Score=88.78  Aligned_cols=101  Identities=30%  Similarity=0.386  Sum_probs=53.0

Q ss_pred             EEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCC-CCCEEEeecCcccccCCccccCCcccceeecccCc
Q 006019           78 LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELE-ELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNND  156 (664)
Q Consensus        78 l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~-~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~N~  156 (664)
                      +++..+.+...+. .+..++.++.|++.+|.++ .||+..+.+. +|+.|++++|++. .+|..+..+++|+.|++++|+
T Consensus        98 l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          98 LDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence            4555444432222 2344455555555555555 4444444443 5555555555555 444455555555555555555


Q ss_pred             ccccCCccccCCCCCCEeeCCCCccc
Q 006019          157 FVGSLSPEIYKLQVLSESQVDEGQLS  182 (664)
Q Consensus       157 ~~g~iP~~~~~l~~L~~l~l~~n~l~  182 (664)
                      ++ .+|...+.++.|+.|++++|+++
T Consensus       175 l~-~l~~~~~~~~~L~~L~ls~N~i~  199 (394)
T COG4886         175 LS-DLPKLLSNLSNLNNLDLSGNKIS  199 (394)
T ss_pred             hh-hhhhhhhhhhhhhheeccCCccc
Confidence            55 45554445555555555555555

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=97.76  E-value=0.00028  Score=70.83  Aligned_cols=137  Identities=10%  Similarity=0.097  Sum_probs=81.1

Q ss_pred             cccCCC-eEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcccceEEEEecCCCceeEEEEEec
Q 006019          378 IGSSPI-GTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMVFEYA  455 (664)
Q Consensus       378 iG~G~~-G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~~~lV~Ey~  455 (664)
                      |-.|.+ ..||+...+ +..+.||......        ..+..+|+++++.+. +--+.+++++....+  ..++||||+
T Consensus         6 ~~~g~~~~~v~~~~~~-~~~~~vk~~~~~~--------~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~--~~~lv~e~i   74 (244)
T cd05150           6 VTEGQSGATVYRLDGK-NPGLYLKIAPSGP--------TYELEREAERLRWLAGKLPVPEVIDYGSDDG--RAWLLTSAV   74 (244)
T ss_pred             cCCCCCcCeEEEEcCC-CCcEEEEecCCCc--------ccchHHHHHHHHHHHhcCCCCeEEEEEecCC--ccEEEEEee
Confidence            455555 789999764 3567777654221        134667888888874 344556777776544  458999999


Q ss_pred             CCCChhhh-------------------hcccCC--CCCC--HHHHHHHHH--------------------HHHHHHHHhh
Q 006019          456 PNGTLFEH-------------------IHIKES--EHLD--WGMRLRIAM--------------------GMAYCLEHMH  492 (664)
Q Consensus       456 ~~GsL~~~-------------------l~~~~~--~~l~--~~~~~~ia~--------------------~ia~gL~yLH  492 (664)
                      ++.++...                   +|....  ....  +..+..-..                    ........|-
T Consensus        75 ~G~~l~~~~~~~~~~~~~~~l~~~l~~lH~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  154 (244)
T cd05150          75 PGVPAAALWEELEPERLVDALAEALRRLHALPVADCPFDRRLDRRLAEARARVENGLVDEDDFDDERRGWSAEELYAELE  154 (244)
T ss_pred             CCccHhHhhcccCHHHHHHHHHHHHHHHhcCCcccCCcchhHHHHHHHHHHHHhcCCcChhhCcHhhcCCCHHHHHHHHH
Confidence            98777533                   121111  0111  001110000                    0111222231


Q ss_pred             -----cCCCCeEEeCcCCCCeEecCCCceEecccCchh
Q 006019          493 -----QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN  525 (664)
Q Consensus       493 -----~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~  525 (664)
                           ...+.++|+|+.+.|||++++....|.||+.+.
T Consensus       155 ~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~iIDwe~a~  192 (244)
T cd05150         155 ATRPAEEDLVVTHGDACLPNIIVDPGKFSGFIDLGRLG  192 (244)
T ss_pred             hhCCCcCceEEECCCCCCccEEEeCCcEEEEEEccccc
Confidence                 123569999999999999998888999998654

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.74  E-value=9.2e-06  Score=82.85  Aligned_cols=92  Identities=18%  Similarity=0.158  Sum_probs=81.1

Q ss_pred             cccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecccCcccccCCccccCCCCC
Q 006019           92 EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVL  171 (664)
Q Consensus        92 ~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L  171 (664)
                      .|..|++|+.|+|++|.+++.-+..|..+.+|+.|.|..|++.----..|-++.+|++|+|.+|+++-.-|..|..+..|
T Consensus       269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l  348 (498)
T KOG4237|consen  269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL  348 (498)
T ss_pred             HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence            37889999999999999998888999999999999999999875444557788999999999999998888899999999


Q ss_pred             CEeeCCCCcccc
Q 006019          172 SESQVDEGQLSS  183 (664)
Q Consensus       172 ~~l~l~~n~l~g  183 (664)
                      .+|+|-.|-|.-
T Consensus       349 ~~l~l~~Np~~C  360 (498)
T KOG4237|consen  349 STLNLLSNPFNC  360 (498)
T ss_pred             eeeehccCcccC
Confidence            999999988863

>PLN02876 acyl-CoA dehydrogenase

Probab=97.73  E-value=0.00037  Score=82.42  Aligned_cols=148  Identities=9%  Similarity=0.141  Sum_probs=89.5

Q ss_pred             cccccCCCeEEEEEEECCC---cEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcc--cceEEEEecCCC-cee
Q 006019          376 NVIGSSPIGTVYKGTLSNG---VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNF--VNLIGFCEEEEP-FTR  448 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~~---~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~ni--v~l~g~~~~~~~-~~~  448 (664)
                      +.++.|.++.+|+....++   ..+++|+.......    .....+.+|.++|+.+. |.++  .+.+++|.+... ...
T Consensus        44 ~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~~----~~~~~~~rE~~~l~~L~~~~~vpVP~v~~~~~d~~v~G~~  119 (822)
T PLN02876         44 SQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLL----QSAHAVEREYQVLRALGEHTDVPVPKVYCLCTDASVIGTA  119 (822)
T ss_pred             EEeCCCCcCceEEEEECCCCcceeEEEEeCCCCccC----ccHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCCcCCCc
Confidence            5689999999999887654   35566654322111    12346889999999995 6665  788888876421 135


Q ss_pred             EEEEEecCCCChhh-----------------------hhcccCC---------CCCCH--------HHHHHH--------
Q 006019          449 MMVFEYAPNGTLFE-----------------------HIHIKES---------EHLDW--------GMRLRI--------  480 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~-----------------------~l~~~~~---------~~l~~--------~~~~~i--------  480 (664)
                      ++||||+++..+.+                       .||.-..         ....+        .....-        
T Consensus       120 flVME~v~G~~~~~~~~~~~~~~~r~~l~~~l~~~La~LH~vd~~~~gl~~~g~~~~~~~~~l~~w~~~~~~~~~~~~~~  199 (822)
T PLN02876        120 FYIMEYLEGRIFVDPKLPGVAPERRRAIYRATAKVLAALHSADVDAIGLGKYGRRDNYCKRQVERWAKQYLASTGEGKPP  199 (822)
T ss_pred             eEEEEecCCcccCCccCCCCCHHHHHHHHHHHHHHHHHHhCCCchhcChhhcCCCCchHHHHHHHHHHHHHHhhcccCCC
Confidence            89999998765422                       1221110         01111        111110        


Q ss_pred             -HHHHHHHHHHhhcCC---------CCeEEeCcCCCCeEecCC-C-ceEecccCchhhh
Q 006019          481 -AMGMAYCLEHMHQLN---------PPIAHNYLNSSAVHLTED-Y-AAKLSDLSFWNEI  527 (664)
Q Consensus       481 -a~~ia~gL~yLH~~~---------~~ivHrDLk~~NILld~~-~-~~kl~DfGla~~~  527 (664)
                       ...+...+++|...-         +.+||+|+++.||+++.+ . .+-|.||.++..-
T Consensus       200 ~~~~~~~l~~wL~~~~P~~~~~~~~~~LvHGD~~~~Nvl~~~~~~~v~aVLDWE~a~~G  258 (822)
T PLN02876        200 RNPKMLELIDWLRENIPAEDSTGAGTGIVHGDFRIDNLVFHPTEDRVIGILDWELSTLG  258 (822)
T ss_pred             CChhHHHHHHHHHhcCCCccccCCCcceEecCcccccEEEcCCCCeEEEEEeeeccccC
Confidence             122344566773321         349999999999999853 3 3578999876543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.72  E-value=2.5e-05  Score=55.23  Aligned_cols=36  Identities=31%  Similarity=0.433  Sum_probs=19.4

Q ss_pred             ccceeecccCcccccCCccccCCCCCCEeeCCCCccc
Q 006019          146 SLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS  182 (664)
Q Consensus       146 ~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~  182 (664)
                      +|++|++++|+++ .||+.+++|++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 45555555555555555555555

...

>PRK10593 hypothetical protein; Provisional

Probab=97.68  E-value=0.00074  Score=69.85  Aligned_cols=77  Identities=14%  Similarity=0.113  Sum_probs=54.3

Q ss_pred             cccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCC---CcccceEEEEecCC-CceeEEE
Q 006019          376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH---KNFVNLIGFCEEEE-PFTRMMV  451 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H---~niv~l~g~~~~~~-~~~~~lV  451 (664)
                      +.||.|..+.||+-...+++ +.+|..+...       ....|..|.+.|+.+.-   -.+.+++++|.... ....+||
T Consensus        20 ~~i~~G~~~~vy~~~~~~~~-~~~k~~~~~~-------~~~~~~~Ea~~L~~L~~~~~vpVP~V~~~~~~~~~~g~~~LV   91 (297)
T PRK10593         20 ECISEQPYAALWALYDSQGN-PMPLMARSFS-------TPGVAQQEAWKLSMLARSGTVRMPTVYGVMTHEQSPGPDVLL   91 (297)
T ss_pred             eecCCccceeEEEEEcCCCC-EEEEEecccc-------cchHHHHHHHHHHHHccCCCCCcCcEEEEeccCCcCCCeEEE
Confidence            57999999999998866664 5555532110       12468899999998853   36788898886431 1146999


Q ss_pred             EEecCCCCh
Q 006019          452 FEYAPNGTL  460 (664)
Q Consensus       452 ~Ey~~~GsL  460 (664)
                      |||++++++
T Consensus        92 mE~i~G~~~  100 (297)
T PRK10593         92 LERLRGVSV  100 (297)
T ss_pred             EeccCCEec
Confidence            999998765

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=97.68  E-value=0.00039  Score=68.86  Aligned_cols=142  Identities=13%  Similarity=0.137  Sum_probs=82.5

Q ss_pred             cccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCC--cccceEEEEecCCC-ceeEEEE
Q 006019          376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK--NFVNLIGFCEEEEP-FTRMMVF  452 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~--niv~l~g~~~~~~~-~~~~lV~  452 (664)
                      +.++.|..+.||+....+ ..+++|.....       .....+..|..+++.+...  .+.++++++..... ...+++|
T Consensus         3 ~~l~~G~~n~~~~v~~~~-~~~vlK~~~~~-------~~~~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~~~~~~~~~~~   74 (239)
T PF01636_consen    3 RPLSGGFSNRVYRVTTDD-GRYVLKFYRPP-------DAAERLRREAAVLRQLAEHGIPVPRVLAFDTSDEFNGFPYLLM   74 (239)
T ss_dssp             EEEEESSSSEEEEEEETT-SEEEEEEESSH-------HHHHHHHHHHHHHHHHHHTTSBS--EEEEEEETEETSEEEEEE
T ss_pred             ccCCCCCeeeEEEEEECC-cEEEEEEeCCC-------CCHHHHHHHHHHHHHHHhcCCCCceEEeecccccccccceEEE
Confidence            468999999999999877 57888875322       2346778888888888533  35677765543321 1358999


Q ss_pred             EecCCCChhh----------------h---hccc--CCCCCCHHH---------HHHH------------HHHHHH-HHH
Q 006019          453 EYAPNGTLFE----------------H---IHIK--ESEHLDWGM---------RLRI------------AMGMAY-CLE  489 (664)
Q Consensus       453 Ey~~~GsL~~----------------~---l~~~--~~~~l~~~~---------~~~i------------a~~ia~-gL~  489 (664)
                      +|+++..+..                .   +|..  ......+..         ....            ...+.+ .++
T Consensus        75 ~~i~g~~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (239)
T PF01636_consen   75 EYIPGRPLDDELSPEQRPELLRQLGRALAQLHQVPPPFSPFADWPEWRLEFLRQLESWTARLRASELFDDLEELEERLLQ  154 (239)
T ss_dssp             EEESSEEHHHTSTHHHHHHHHHHHHHHHHHHHHSHTTCCCHTHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             EEeccccccccccccccccccccchhhhhhcccccccccccccccccccccccccccccccccchhhhhhhHHHHHHHHH
Confidence            9999987776                1   1111  111111110         0000            112222 333


Q ss_pred             Hhhc-----CCCCeEEeCcCCCCeEec-CCCceEecccCchh
Q 006019          490 HMHQ-----LNPPIAHNYLNSSAVHLT-EDYAAKLSDLSFWN  525 (664)
Q Consensus       490 yLH~-----~~~~ivHrDLk~~NILld-~~~~~kl~DfGla~  525 (664)
                      .+++     ....++|+|+.+.|||++ +++.+.|.||+.+.
T Consensus       155 ~~~~~~~~~~~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a~  196 (239)
T PF01636_consen  155 ELEALLPKPLPPVLIHGDLHPGNILVDPSDGRIGIIDFEDAG  196 (239)
T ss_dssp             HHHHHHHCCSCEEEE-SS-SGGGEEEESSTTEEEE--GTT-E
T ss_pred             HHHhhhccCCCcEEEEeccccccceeeeccceeEEEecccce
Confidence            3331     334599999999999999 66666899998654

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.63  E-value=4.1e-05  Score=54.17  Aligned_cols=36  Identities=36%  Similarity=0.489  Sum_probs=17.4

Q ss_pred             CCCEEEeecCcccccCCccccCCcccceeecccCccc
Q 006019          122 ELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFV  158 (664)
Q Consensus       122 ~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~N~~~  158 (664)
                      +|++|+|++|+++ .+|+.+++|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4455555555555 34444555555555555555544

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.61  E-value=6.6e-06  Score=71.92  Aligned_cols=82  Identities=23%  Similarity=0.277  Sum_probs=37.1

Q ss_pred             CCCCEEEccCCcccccCCcccCC-CCCCCEEEeecCcccccCCccccCCcccceeecccCcccccCCccccCCCCCCEee
Q 006019           97 THIKSIILRNNSFSGIIPEGFGE-LEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQ  175 (664)
Q Consensus        97 ~~L~~l~L~~N~l~g~ip~~~~~-l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~  175 (664)
                      ..|...+|++|.|. .+|..|.. .+-++.|+|++|.++ .+|.++..++.|+.|+++.|.|+ ..|.-+..|.+|..|+
T Consensus        53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD  129 (177)
T ss_pred             ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence            33444444444443 23333322 224444455555544 34444444555555555555444 3444444444454555


Q ss_pred             CCCCcc
Q 006019          176 VDEGQL  181 (664)
Q Consensus       176 l~~n~l  181 (664)
                      ..+|..
T Consensus       130 s~~na~  135 (177)
T KOG4579|consen  130 SPENAR  135 (177)
T ss_pred             CCCCcc
Confidence            444444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.61  E-value=1.3e-05  Score=78.79  Aligned_cols=117  Identities=20%  Similarity=0.147  Sum_probs=92.1

Q ss_pred             ccceeEecC------CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccC
Q 006019           64 SWFGVECSD------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL  137 (664)
Q Consensus        64 ~w~gv~C~~------~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~i  137 (664)
                      +..-++|-+      ..|..|+|+.|++. .+.. +..|++|+.||||+|.++ .+-.+-..|.+.+.|.|+.|.+.. +
T Consensus       292 S~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~-L  367 (490)
T KOG1259|consen  292 SGNLITQIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET-L  367 (490)
T ss_pred             cccchhhhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh-h
Confidence            344566632      47899999999987 3443 888999999999999998 344444567889999999998873 2


Q ss_pred             CccccCCcccceeecccCccccc-CCccccCCCCCCEeeCCCCcccccc
Q 006019          138 PNDLGINHSLTILLLDNNDFVGS-LSPEIYKLQVLSESQVDEGQLSSAA  185 (664)
Q Consensus       138 p~~~~~~~~L~~l~l~~N~~~g~-iP~~~~~l~~L~~l~l~~n~l~g~~  185 (664)
                       ..++.+-+|..||+++|++..- --..||+++.|+.+.|-+|-+.+.+
T Consensus       368 -SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  368 -SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             -hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence             3577888999999999998631 1246899999999999999998754

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.60  E-value=4e-05  Score=82.87  Aligned_cols=104  Identities=28%  Similarity=0.428  Sum_probs=94.5

Q ss_pred             cEEEEEeCCCCccccccccccCCC-CCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           74 KVVNLNLKDLCLEGTLAPEIQSLT-HIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~~~~l~-~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .++.|++.+|+++ .||+..+.+. +|+.|+++.|.+. .+|..++.++.|+.|++++|+++ .+|...+.+++|+.|++
T Consensus       117 ~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence            6899999999988 6888888885 9999999999998 67778999999999999999999 78888778999999999


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCcc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQL  181 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l  181 (664)
                      ++|+++ .+|..+..+..|+++.+++|..
T Consensus       194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~~  221 (394)
T COG4886         194 SGNKIS-DLPPEIELLSALEELDLSNNSI  221 (394)
T ss_pred             cCCccc-cCchhhhhhhhhhhhhhcCCcc
Confidence            999998 8999888888899999999963

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	664
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		9e-22
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		2e-21
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		1e-17
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		1e-17
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		4e-16
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		4e-16
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		5e-16
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		7e-14
3kmw_A	271	Crystal Structure Of The IlkALPHA-Parvin Core Compl		1e-13
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		5e-13
3kmu_A	271	Crystal Structure Of The IlkALPHA-Parvin Core Compl		4e-12
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		1e-11
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		1e-11
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		1e-11
4h58_A	275	Braf In Complex With Compound 3 Length = 275		1e-11
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		1e-11
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		1e-11
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		1e-11
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		1e-11
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		1e-11
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		1e-11
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		1e-11
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		2e-11
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		2e-11
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		3e-11
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		6e-11
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		1e-10
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		4e-10
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		5e-10
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		4e-08
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		5e-08
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		6e-08
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		6e-08
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		9e-08
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		9e-08
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		9e-08
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		1e-07
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		1e-07
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		2e-07
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		2e-07
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		2e-07
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		2e-07
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		2e-07
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		2e-07
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		2e-07
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		2e-07
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		3e-07
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		4e-07
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		8e-07
3fe3_A	328	Crystal Structure Of The Kinase Mark3PAR-1: T211a-S		1e-06
1y8g_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		2e-06
2wqm_A	310	Structure Of Apo Human Nek7 Length = 310		2e-06
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		3e-06
2y94_A	476	Structure Of An Active Form Of Mammalian Ampk Lengt		3e-06
2qnj_A	328	Kinase And Ubiquitin-Associated Domains Of Mark3PAR		3e-06
2r0i_A	327	Crystal Structure Of A Kinase Mark2PAR-1 Mutant Len		3e-06
1zmw_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		4e-06
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		4e-06
2wzj_A	327	Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82		5e-06
1zmv_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		5e-06
1zmu_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		5e-06
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		7e-06
3a4o_X	286	Lyn Kinase Domain Length = 286		9e-06
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		1e-05
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		1e-05
2hak_A	328	Catalytic And Ubiqutin-Associated Domains Of Mark1P		2e-05
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		2e-05
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		2e-05
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		2e-05
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		2e-05
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		2e-05
3iec_A	319	Helicobacter Pylori Caga Inhibits Par1MARK FAMILY K		3e-05
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		3e-05
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		3e-05
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		3e-05
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		4e-05
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		4e-05
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		4e-05
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		5e-05
3zzw_A	289	Crystal Structure Of The Kinase Domain Of Ror2 Leng		5e-05
4gt4_A	308	Structure Of Unliganded, Inactive Ror2 Kinase Domai		5e-05
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		5e-05
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		6e-05
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		6e-05
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		6e-05
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		8e-05
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		8e-05
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		9e-05
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		9e-05
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		1e-04
3kxx_A	317	Structure Of The Mutant Fibroblast Growth Factor Re		1e-04
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		1e-04
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		1e-04
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		2e-04
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		2e-04
1fvr_A	327	Tie2 Kinase Domain Length = 327		2e-04
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		2e-04
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		2e-04
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		2e-04
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		2e-04
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		2e-04
3h4j_B	336	Crystal Structure Of Pombe Ampk Kdaid Fragment Leng		2e-04
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		2e-04
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		2e-04
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		2e-04
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		2e-04
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		2e-04
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		3e-04
3rhx_B	306	Crystal Structure Of The Catalytic Domain Of Fgfr1		3e-04
2p0c_A	313	Catalytic Domain Of The Proto-Oncogene Tyrosine-Pro		3e-04
3pls_A	298	Ron In Complex With Ligand Amp-Pnp Length = 298		3e-04
1fgk_A	310	Crystal Structure Of The Tyrosine Kinase Domain Of		3e-04
4f63_A	309	Crystal Structure Of Human Fibroblast Growth Factor		3e-04
3q6w_A	307	Structure Of Dually-phosphorylated Met Receptor Kin		3e-04
2h6d_A	276	Protein Kinase Domain Of The Human 5'-Amp-Activated		3e-04
3js2_A	317	Crystal Structure Of Minimal Kinase Domain Of Fibro		3e-04
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		3e-04
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		3e-04
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		4e-04
3fpq_A	290	Crystal Structure Of The Kinase Domain Of Wnk1 Leng		4e-04
3gqi_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		4e-04
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		4e-04
2yza_A	276	Crystal Structure Of Kinase Domain Of Human 5'-Amp-		4e-04
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		4e-04
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		4e-04
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		4e-04
3c4f_A	302	Fgfr Tyrosine Kinase Domain In Complex With 3-(3- M		4e-04
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		4e-04
3gql_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		5e-04
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		5e-04
3tt0_A	382	Co-Structure Of Fibroblast Growth Factor Receptor 1		5e-04
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		5e-04
4apc_A	350	Crystal Structure Of Human Nima-Related Kinase 1 (N		9e-04
3g2f_A	336	Crystal Structure Of The Kinase Domain Of Bone Morp		9e-04

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score =  102 bits (253), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 142/298 (47%), Gaps = 32/298 (10%)
Query: 361 KLKR---SELEAACEDFSN--VIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLE 415
           +LKR    EL+ A ++FSN  ++G    G VYKG L++G  +          ++  +  E
Sbjct: 24  QLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLK----EERXQGGE 79
Query: 416 VQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEH--LD 473
           +QF+ +++ +S   H+N + L GFC    P  R++V+ Y  NG++   +  +      LD
Sbjct: 80  LQFQTEVEMISMAVHRNLLRLRGFC--MTPTERLLVYPYMANGSVASCLRERPESQPPLD 137
Query: 474 WGMRLRIAMGMAYCLEHMH-QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE- 531
           W  R RIA+G A  L ++H   +P I H  + ++ + L E++ A + D      +   + 
Sbjct: 138 WPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDX 197
Query: 532 ---------MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLV------DNGSLE 576
                    +                 +V+ +GV+L E++TG+  + +      D+  L 
Sbjct: 198 HVXXAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLL 257
Query: 577 DWAADYLSGVQPLQQFVDPTLS-SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 633
           DW    L   + L+  VD  L  ++ +E++E L ++   C ++ P +RP M ++  +L
Sbjct: 258 DWVKGLLKE-KKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRML 314

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 140/298 (46%), Gaps = 32/298 (10%)
Query: 361 KLKR---SELEAACEDF--SNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLE 415
           +LKR    EL+ A ++F   N++G    G VYKG L++G  +          ++  +  E
Sbjct: 16  QLKRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLK----EERTQGGE 71
Query: 416 VQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEH--LD 473
           +QF+ +++ +S   H+N + L GFC    P  R++V+ Y  NG++   +  +      LD
Sbjct: 72  LQFQTEVEMISMAVHRNLLRLRGFC--MTPTERLLVYPYMANGSVASCLRERPESQPPLD 129
Query: 474 WGMRLRIAMGMAYCLEHMH-QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI----- 527
           W  R RIA+G A  L ++H   +P I H  + ++ + L E++ A + D      +     
Sbjct: 130 WPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDX 189
Query: 528 -----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLV------DNGSLE 576
                    +                 +V+ +GV+L E++TG+  + +      D+  L 
Sbjct: 190 HVXXAVRGXIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLL 249
Query: 577 DWAADYLSGVQPLQQFVDPTLS-SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 633
           DW    L   + L+  VD  L  ++ +E++E L ++   C ++ P +RP M ++  +L
Sbjct: 250 DWVKGLLKE-KKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRML 306

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 128/286 (44%), Gaps = 34/286 (11%)
Query: 366 ELEAACEDFSN--VIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKID 423
           +LE A  +F +  +IG    G VYKG L +G ++          +        +F  +I+
Sbjct: 33  DLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQG-----IEEFETEIE 87
Query: 424 TLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--SEHLDWGMRLRIA 481
           TLS   H + V+LIGFC+E      +++++Y  NG L  H++  +  +  + W  RL I 
Sbjct: 88  TLSFCRHPHLVSLIGFCDERNEM--ILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEIC 145
Query: 482 MGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE-----------IAMA 530
           +G A  L ++H     I H  + S  + L E++  K++D     +           +   
Sbjct: 146 IGAARGLHYLH--TRAIIHRDVKSINILLDENFVPKITDFGISKKGTELGQTHLXXVVKG 203
Query: 531 EMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGR------LPYLVDNGSLEDWAADYLS 584
            +                 +VY+FGV+LFE++  R      LP  + N  L +WA +  +
Sbjct: 204 TLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVN--LAEWAVESHN 261
Query: 585 GVQPLQQFVDPTLS-SFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
             Q L+Q VDP L+     E L   G+    C+    E RP+M D+
Sbjct: 262 NGQ-LEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDV 306

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 128/286 (44%), Gaps = 34/286 (11%)
Query: 366 ELEAACEDFSN--VIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKID 423
           +LE A  +F +  +IG    G VYKG L +G ++          +        +F  +I+
Sbjct: 33  DLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQG-----IEEFETEIE 87
Query: 424 TLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--SEHLDWGMRLRIA 481
           TLS   H + V+LIGFC+E      +++++Y  NG L  H++  +  +  + W  RL I 
Sbjct: 88  TLSFCRHPHLVSLIGFCDERNEM--ILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEIC 145
Query: 482 MGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE-----------IAMA 530
           +G A  L ++H     I H  + S  + L E++  K++D     +           +   
Sbjct: 146 IGAARGLHYLH--TRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLXXVVKG 203
Query: 531 EMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGR------LPYLVDNGSLEDWAADYLS 584
            +                 +VY+FGV+LFE++  R      LP  + N  L +WA +  +
Sbjct: 204 TLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVN--LAEWAVESHN 261
Query: 585 GVQPLQQFVDPTLS-SFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
             Q L+Q VDP L+     E L   G+    C+    E RP+M D+
Sbjct: 262 NGQ-LEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDV 306

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 126/277 (45%), Gaps = 21/277 (7%)
Query: 376 NVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVN 435
           N +G    G VYKG ++N                  + L+ QF ++I  ++K  H+N V 
Sbjct: 37  NKMGEGGFGVVYKGYVNNTT--VAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVE 94
Query: 436 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIH-IKESEHLDWGMRLRIAMGMAYCLEHMHQL 494
           L+GF  + +     +V+ Y PNG+L + +  +  +  L W MR +IA G A  +  +H+ 
Sbjct: 95  LLGFSSDGDDLC--LVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHE- 151
Query: 495 NPPIAHNYLNSSAVHLTEDYAAKLSDL-------SFWNEIAMAEMXXXXXXXXXXXXXXX 547
           N  I H  + S+ + L E + AK+SD         F   +  + +               
Sbjct: 152 NHHI-HRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXSRIVGTTAYMAPEALRGE 210
Query: 548 ---XXNVYNFGVLLFEMVTGRLPYLVDNGS---LEDWAADYLSGVQPLQQFVDPTLSSFD 601
                ++Y+FGV+L E++TG LP + ++     L D   +     + ++ ++D  ++  D
Sbjct: 211 ITPKSDIYSFGVVLLEIITG-LPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDAD 269
Query: 602 EEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG 638
              +E +  +   C+     KRP ++ +  +L+E+T 
Sbjct: 270 STSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 306

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 127/277 (45%), Gaps = 21/277 (7%)
Query: 376 NVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVN 435
           N +G    G VYKG ++N                  + L+ QF ++I  ++K  H+N V 
Sbjct: 37  NKMGEGGFGVVYKGYVNNTT--VAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVE 94
Query: 436 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIH-IKESEHLDWGMRLRIAMGMAYCLEHMHQL 494
           L+GF  + +     +V+ Y PNG+L + +  +  +  L W MR +IA G A  +  +H+ 
Sbjct: 95  LLGFSSDGDDLC--LVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHE- 151
Query: 495 NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN---EIAMAEMXXXXXXXXXXXXXXX---- 547
           N  I H  + S+ + L E + AK+SD        + A   M                   
Sbjct: 152 NHHI-HRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXXRIVGTTAYMAPEALRGE 210
Query: 548 ---XXNVYNFGVLLFEMVTGRLPYLVDNGS---LEDWAADYLSGVQPLQQFVDPTLSSFD 601
                ++Y+FGV+L E++TG LP + ++     L D   +     + ++ ++D  ++  D
Sbjct: 211 ITPKSDIYSFGVVLLEIITG-LPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDAD 269
Query: 602 EEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG 638
              +E +  +   C+     KRP ++ +  +L+E+T 
Sbjct: 270 STSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 306

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 82.8 bits (203), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 127/277 (45%), Gaps = 21/277 (7%)
Query: 376 NVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVN 435
           N +G    G VYKG ++N                  + L+ QF ++I  ++K  H+N V 
Sbjct: 31  NKMGEGGFGVVYKGYVNNTT--VAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVE 88
Query: 436 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIH-IKESEHLDWGMRLRIAMGMAYCLEHMHQL 494
           L+GF  + +     +V+ Y PNG+L + +  +  +  L W MR +IA G A  +  +H+ 
Sbjct: 89  LLGFSSDGDDLC--LVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHE- 145
Query: 495 NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN---EIAMAEMXXXXXXXXXXXXXXX---- 547
           N  I H  + S+ + L E + AK+SD        + A   M                   
Sbjct: 146 NHHI-HRDIKSANILLDEAFTAKISDFGLARASEKFAQXVMXXRIVGTTAYMAPEALRGE 204
Query: 548 ---XXNVYNFGVLLFEMVTGRLPYLVDNGS---LEDWAADYLSGVQPLQQFVDPTLSSFD 601
                ++Y+FGV+L E++TG LP + ++     L D   +     + ++ ++D  ++  D
Sbjct: 205 ITPKSDIYSFGVVLLEIITG-LPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDAD 263
Query: 602 EEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG 638
              +E +  +   C+     KRP ++ +  +L+E+T 
Sbjct: 264 STSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 300

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 121/277 (43%), Gaps = 21/277 (7%)
Query: 376 NVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVN 435
           N  G    G VYKG ++N                  + L+ QF ++I   +K  H+N V 
Sbjct: 28  NKXGEGGFGVVYKGYVNNTT--VAVKKLAAMVDITTEELKQQFDQEIKVXAKCQHENLVE 85
Query: 436 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIH-IKESEHLDWGMRLRIAMGMAYCLEHMHQL 494
           L+GF  + +     +V+ Y PNG+L + +  +  +  L W  R +IA G A  +  +H+ 
Sbjct: 86  LLGFSSDGDDLC--LVYVYXPNGSLLDRLSCLDGTPPLSWHXRCKIAQGAANGINFLHE- 142
Query: 495 NPPIAHNYLNSSAVHLTEDYAAKLSDL-------SFWNEIAMAEMXXXXXXXXXXXXXXX 547
           N  I H  + S+ + L E + AK+SD         F   +  + +               
Sbjct: 143 NHHI-HRDIKSANILLDEAFTAKISDFGLARASEKFAQXVXXSRIVGTTAYXAPEALRGE 201
Query: 548 ---XXNVYNFGVLLFEMVTGRLPYLVDNGS---LEDWAADYLSGVQPLQQFVDPTLSSFD 601
                ++Y+FGV+L E++TG LP + ++     L D   +     + ++ ++D   +  D
Sbjct: 202 ITPKSDIYSFGVVLLEIITG-LPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKXNDAD 260
Query: 602 EEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG 638
              +E    +   C+     KRP ++ +  +L+E T 
Sbjct: 261 STSVEAXYSVASQCLHEKKNKRPDIKKVQQLLQEXTA 297

>pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex (Mgatp) Length = 271

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 107/236 (45%), Gaps = 18/236 (7%)
Query: 408 KDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIK 467
           +DW       F ++   L   +H N + ++G C+        ++  + P G+L+  +H  
Sbjct: 44  RDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEG 103
Query: 468 ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLS--DLSFWN 525
            +  +D    ++ A+ MA  +  +H L P I  + LNS +V + ED  A++S  D+ F  
Sbjct: 104 TNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSF 163
Query: 526 E-----IAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAA 580
           +      A A +                 ++++F VLL+E+VT  +P+  D  ++E    
Sbjct: 164 QSPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPF-ADLSNMEIGMK 222
Query: 581 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
             L G++P    + P +S         + +L+K C+  DP KRP    I  IL ++
Sbjct: 223 VALEGLRPT---IPPGISPH-------VSKLMKICMNEDPAKRPKFDMIVPILEKM 268

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 119/278 (42%), Gaps = 32/278 (11%)
Query: 366 ELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTL 425
           E+EA+    S  IGS   GTVYKG     V +             P+  +  FR ++  L
Sbjct: 32  EIEASEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPT----PEQFQA-FRNEVAVL 86
Query: 426 SKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMA 485
            K  H N +  +G+  ++      +V ++    +L++H+H++E++   + + + IA   A
Sbjct: 87  RKTRHVNILLFMGYMTKD---NLAIVTQWCEGSSLYKHLHVQETKFQMFQL-IDIARQTA 142
Query: 486 YCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDL------SFWNEIAMAE-------- 531
             ++++H  N  I H  + S+ + L E    K+ D       S W+     E        
Sbjct: 143 QGMDYLHAKN--IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLW 200
Query: 532 MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQ 591
           M                 +VY++G++L+E++TG LPY   N   +     ++ G    + 
Sbjct: 201 MAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQ---IIFMVG----RG 253
Query: 592 FVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
           +  P LS   +   + +  L+  CV+   E+RP    I
Sbjct: 254 YASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQI 291

>pdb|3KMU|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex (Apo) Length = 271

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 99/235 (42%), Gaps = 18/235 (7%)
Query: 408 KDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIK 467
           +DW       F ++   L   +H N + ++G C+        ++  + P G+L+  +H  
Sbjct: 44  RDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWXPYGSLYNVLHEG 103
Query: 468 ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLS--DLSF-- 523
            +  +D    ++ A+  A     +H L P I  + LNS +V + ED  A++S  D+ F  
Sbjct: 104 TNFVVDQSQAVKFALDXARGXAFLHTLEPLIPRHALNSRSVXIDEDXTARISXADVKFSF 163
Query: 524 ---WNEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAA 580
                  A A +                 + ++F VLL+E+VT  +P+  D  + E    
Sbjct: 164 QSPGRXYAPAWVAPEALQKKPEDTNRRSADXWSFAVLLWELVTREVPF-ADLSNXEIGXK 222
Query: 581 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
             L G++P    + P +S         + +L K C   DP KRP    I  IL +
Sbjct: 223 VALEGLRPT---IPPGISPH-------VSKLXKICXNEDPAKRPKFDXIVPILEK 267

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 119/279 (42%), Gaps = 36/279 (12%)
Query: 378 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 437
           IGS   GTVYKG     V +             P+ L+  F+ ++  L K  H N +  +
Sbjct: 20  IGSGSFGTVYKGKWHGDVAVKMLNVTAPT----PQQLQA-FKNEVGVLRKTRHVNILLFM 74
Query: 438 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPP 497
           G+  + +     +V ++    +L+ H+H  E++  +    + IA   A  ++++H  +  
Sbjct: 75  GYSTKPQ---LAIVTQWCEGSSLYHHLHASETK-FEMKKLIDIARQTARGMDYLHAKS-- 128
Query: 498 IAHNYLNSSAVHLTEDYAAKLSDL------SFWNEIAMAE--------MXXXXXXXXXXX 543
           I H  L S+ + L ED   K+ D       S W+     E        M           
Sbjct: 129 IIHRDLKSNNIFLHEDNTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDSN 188
Query: 544 XXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 603
                 +VY FG++L+E++TG+LPY   N +  D   + +      +  + P LS     
Sbjct: 189 PYSFQSDVYAFGIVLYELMTGQLPY--SNINNRDQIIEMVG-----RGSLSPDLSKVRSN 241
Query: 604 QLETLGELIKSCVRADPEKRPT----MRDIAAILREITG 638
             + +  L+  C++   ++RP+    + +I  + RE++G
Sbjct: 242 CPKRMKRLMAECLKKKRDERPSFPRILAEIEELARELSG 280

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 113/268 (42%), Gaps = 32/268 (11%)
Query: 378 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 437
           IGS   GTVYKG     V +             P+ L+  F+ ++  L K  H N +  +
Sbjct: 21  IGSGSFGTVYKGKWHGDVAVKMLNVTAPT----PQQLQA-FKNEVGVLRKTRHVNILLFM 75
Query: 438 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPP 497
           G+  + +     +V ++    +L+ H+HI E++  +    + IA   A  ++++H  +  
Sbjct: 76  GYSTKPQ---LAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHAKS-- 129
Query: 498 IAHNYLNSSAVHLTEDYAAKLSDL------SFWNEIAMAE--------MXXXXXXXXXXX 543
           I H  L S+ + L ED   K+ D       S W+     E        M           
Sbjct: 130 IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKN 189
Query: 544 XXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 603
                 +VY FG++L+E++TG+LPY   N   +     ++ G    + ++ P LS     
Sbjct: 190 PYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ---IIFMVG----RGYLSPDLSKVRSN 242
Query: 604 QLETLGELIKSCVRADPEKRPTMRDIAA 631
             + +  L+  C++   ++RP    I A
Sbjct: 243 CPKAMKRLMAECLKKKRDERPLFPQILA 270

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 113/268 (42%), Gaps = 32/268 (11%)
Query: 378 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 437
           IGS   GTVYKG     V +             P+ L+  F+ ++  L K  H N +  +
Sbjct: 21  IGSGSFGTVYKGKWHGDVAVKMLNVTAPT----PQQLQA-FKNEVGVLRKTRHVNILLFM 75
Query: 438 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPP 497
           G+  + +     +V ++    +L+ H+HI E++  +    + IA   A  ++++H  +  
Sbjct: 76  GYSTKPQ---LAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHAKS-- 129
Query: 498 IAHNYLNSSAVHLTEDYAAKLSDL------SFWNEIAMAE--------MXXXXXXXXXXX 543
           I H  L S+ + L ED   K+ D       S W+     E        M           
Sbjct: 130 IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKN 189
Query: 544 XXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 603
                 +VY FG++L+E++TG+LPY   N   +     ++ G    + ++ P LS     
Sbjct: 190 PYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ---IIFMVG----RGYLSPDLSKVRSN 242
Query: 604 QLETLGELIKSCVRADPEKRPTMRDIAA 631
             + +  L+  C++   ++RP    I A
Sbjct: 243 CPKAMKRLMAECLKKKRDERPLFPQILA 270

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 113/268 (42%), Gaps = 32/268 (11%)
Query: 378 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 437
           IGS   GTVYKG     V +             P+ L+  F+ ++  L K  H N +  +
Sbjct: 16  IGSGSFGTVYKGKWHGDVAVKMLNVTAPT----PQQLQA-FKNEVGVLRKTRHVNILLFM 70
Query: 438 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPP 497
           G+  + +     +V ++    +L+ H+HI E++  +    + IA   A  ++++H  +  
Sbjct: 71  GYSTKPQ---LAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHAKS-- 124
Query: 498 IAHNYLNSSAVHLTEDYAAKLSDL------SFWNEIAMAE--------MXXXXXXXXXXX 543
           I H  L S+ + L ED   K+ D       S W+     E        M           
Sbjct: 125 IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKN 184
Query: 544 XXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 603
                 +VY FG++L+E++TG+LPY   N   +     ++ G    + ++ P LS     
Sbjct: 185 PYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ---IIFMVG----RGYLSPDLSKVRSN 237
Query: 604 QLETLGELIKSCVRADPEKRPTMRDIAA 631
             + +  L+  C++   ++RP    I A
Sbjct: 238 CPKAMKRLMAECLKKKRDERPLFPQILA 265

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 113/268 (42%), Gaps = 32/268 (11%)
Query: 378 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 437
           IGS   GTVYKG     V +             P+ L+  F+ ++  L K  H N +  +
Sbjct: 16  IGSGSFGTVYKGKWHGDVAVKMLNVTAPT----PQQLQA-FKNEVGVLRKTRHVNILLFM 70
Query: 438 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPP 497
           G+  + +     +V ++    +L+ H+HI E++  +    + IA   A  ++++H  +  
Sbjct: 71  GYSTKPQ---LAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHAKS-- 124
Query: 498 IAHNYLNSSAVHLTEDYAAKLSDL------SFWNEIAMAE--------MXXXXXXXXXXX 543
           I H  L S+ + L ED   K+ D       S W+     E        M           
Sbjct: 125 IIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDKN 184
Query: 544 XXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 603
                 +VY FG++L+E++TG+LPY   N   +     ++ G    + ++ P LS     
Sbjct: 185 PYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ---IIFMVG----RGYLSPDLSKVRSN 237
Query: 604 QLETLGELIKSCVRADPEKRPTMRDIAA 631
             + +  L+  C++   ++RP    I A
Sbjct: 238 CPKAMKRLMAECLKKKRDERPLFPQILA 265

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 113/268 (42%), Gaps = 32/268 (11%)
Query: 378 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 437
           IGS   GTVYKG     V +             P+ L+  F+ ++  L K  H N +  +
Sbjct: 18  IGSGSFGTVYKGKWHGDVAVKMLNVTAPT----PQQLQA-FKNEVGVLRKTRHVNILLFM 72
Query: 438 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPP 497
           G+  + +     +V ++    +L+ H+HI E++  +    + IA   A  ++++H  +  
Sbjct: 73  GYSTKPQ---LAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHAKS-- 126
Query: 498 IAHNYLNSSAVHLTEDYAAKLSDL------SFWNEIAMAE--------MXXXXXXXXXXX 543
           I H  L S+ + L ED   K+ D       S W+     E        M           
Sbjct: 127 IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKN 186
Query: 544 XXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 603
                 +VY FG++L+E++TG+LPY   N   +     ++ G    + ++ P LS     
Sbjct: 187 PYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ---IIFMVG----RGYLSPDLSKVRSN 239
Query: 604 QLETLGELIKSCVRADPEKRPTMRDIAA 631
             + +  L+  C++   ++RP    I A
Sbjct: 240 CPKAMKRLMAECLKKKRDERPLFPQILA 267

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 119/279 (42%), Gaps = 36/279 (12%)
Query: 378 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 437
           IGS   GTVYKG     V +             P+ L+  F+ ++  L K  H N +  +
Sbjct: 32  IGSGSFGTVYKGKWHGDVAVKMLNVTAPT----PQQLQA-FKNEVGVLRKTRHVNILLFM 86
Query: 438 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPP 497
           G+  + +     +V ++    +L+ H+H  E++  +    + IA   A  ++++H  +  
Sbjct: 87  GYSTKPQ---LAIVTQWCEGSSLYHHLHASETK-FEMKKLIDIARQTARGMDYLHAKS-- 140
Query: 498 IAHNYLNSSAVHLTEDYAAKLSDL------SFWNEIAMAE--------MXXXXXXXXXXX 543
           I H  L S+ + L ED   K+ D       S W+     E        M           
Sbjct: 141 IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSN 200
Query: 544 XXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 603
                 +VY FG++L+E++TG+LPY   N +  D   + +      +  + P LS     
Sbjct: 201 PYSFQSDVYAFGIVLYELMTGQLPY--SNINNRDQIIEMVG-----RGSLSPDLSKVRSN 253
Query: 604 QLETLGELIKSCVRADPEKRPT----MRDIAAILREITG 638
             + +  L+  C++   ++RP+    + +I  + RE++G
Sbjct: 254 CPKRMKRLMAECLKKKRDERPSFPRILAEIEELARELSG 292

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 112/268 (41%), Gaps = 32/268 (11%)
Query: 378 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 437
           IGS   GTVYKG     V +             P+ L+  F+ ++  L K  H N +  +
Sbjct: 44  IGSGSFGTVYKGKWHGDVAVKMLNVTAPT----PQQLQA-FKNEVGVLRKTRHVNILLFM 98
Query: 438 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPP 497
           G+  + +     +V ++    +L+ H+HI E++  +    + IA   A  ++++H     
Sbjct: 99  GYSTKPQ---LAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHA--KS 152
Query: 498 IAHNYLNSSAVHLTEDYAAKLSDL------SFWNEIAMAE--------MXXXXXXXXXXX 543
           I H  L S+ + L ED   K+ D       S W+     E        M           
Sbjct: 153 IIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDKN 212
Query: 544 XXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 603
                 +VY FG++L+E++TG+LPY   N   +     ++ G    + ++ P LS     
Sbjct: 213 PYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ---IIFMVG----RGYLSPDLSKVRSN 265
Query: 604 QLETLGELIKSCVRADPEKRPTMRDIAA 631
             + +  L+  C++   ++RP    I A
Sbjct: 266 CPKAMKRLMAECLKKKRDERPLFPQILA 293

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 112/268 (41%), Gaps = 32/268 (11%)
Query: 378 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 437
           IGS   GTVYKG     V +             P+ L+  F+ ++  L K  H N +  +
Sbjct: 36  IGSGSFGTVYKGKWHGDVAVKMLNVTAPT----PQQLQA-FKNEVGVLRKTRHVNILLFM 90
Query: 438 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPP 497
           G+  + +     +V ++    +L+ H+HI E++  +    + IA   A  ++++H     
Sbjct: 91  GYSTKPQ---LAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHA--KS 144
Query: 498 IAHNYLNSSAVHLTEDYAAKLSDL------SFWNEIAMAE--------MXXXXXXXXXXX 543
           I H  L S+ + L ED   K+ D       S W+     E        M           
Sbjct: 145 IIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDKN 204
Query: 544 XXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 603
                 +VY FG++L+E++TG+LPY   N   +     ++ G    + ++ P LS     
Sbjct: 205 PYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ---IIFMVG----RGYLSPDLSKVRSN 257
Query: 604 QLETLGELIKSCVRADPEKRPTMRDIAA 631
             + +  L+  C++   ++RP    I A
Sbjct: 258 CPKAMKRLMAECLKKKRDERPLFPQILA 285

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 112/268 (41%), Gaps = 32/268 (11%)
Query: 378 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 437
           IGS   GTVYKG     V +             P+ L+  F+ ++  L K  H N +  +
Sbjct: 44  IGSGSFGTVYKGKWHGDVAVKMLNVTAPT----PQQLQA-FKNEVGVLRKTRHVNILLFM 98
Query: 438 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPP 497
           G+  + +     +V ++    +L+ H+HI E++  +    + IA   A  ++++H     
Sbjct: 99  GYSTKPQ---LAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHA--KS 152
Query: 498 IAHNYLNSSAVHLTEDYAAKLSDL------SFWNEIAMAE--------MXXXXXXXXXXX 543
           I H  L S+ + L ED   K+ D       S W+     E        M           
Sbjct: 153 IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKN 212
Query: 544 XXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 603
                 +VY FG++L+E++TG+LPY   N   +     ++ G    + ++ P LS     
Sbjct: 213 PYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ---IIFMVG----RGYLSPDLSKVRSN 265
Query: 604 QLETLGELIKSCVRADPEKRPTMRDIAA 631
             + +  L+  C++   ++RP    I A
Sbjct: 266 CPKAMKRLMAECLKKKRDERPLFPQILA 293

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 112/268 (41%), Gaps = 32/268 (11%)
Query: 378 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 437
           IGS   GTVYKG     V +             P+ L+  F+ ++  L K  H N +  +
Sbjct: 43  IGSGSFGTVYKGKWHGDVAVKMLNVTAPT----PQQLQA-FKNEVGVLRKTRHVNILLFM 97
Query: 438 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPP 497
           G+  + +     +V ++    +L+ H+HI E++  +    + IA   A  ++++H     
Sbjct: 98  GYSTKPQ---LAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHA--KS 151
Query: 498 IAHNYLNSSAVHLTEDYAAKLSDL------SFWNEIAMAE--------MXXXXXXXXXXX 543
           I H  L S+ + L ED   K+ D       S W+     E        M           
Sbjct: 152 IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKN 211
Query: 544 XXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 603
                 +VY FG++L+E++TG+LPY   N   +     ++ G    + ++ P LS     
Sbjct: 212 PYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ---IIFMVG----RGYLSPDLSKVRSN 264
Query: 604 QLETLGELIKSCVRADPEKRPTMRDIAA 631
             + +  L+  C++   ++RP    I A
Sbjct: 265 CPKAMKRLMAECLKKKRDERPLFPQILA 292

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 112/268 (41%), Gaps = 32/268 (11%)
Query: 378 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 437
           IGS   GTVYKG     V +             P+ L+  F+ ++  L K  H N +  +
Sbjct: 16  IGSGSFGTVYKGKWHGDVAVKMLNVTAPT----PQQLQA-FKNEVGVLRKTRHVNILLFM 70
Query: 438 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPP 497
           G+    +     +V ++    +L+ H+HI E++  +    + IA   A  ++++H  +  
Sbjct: 71  GYSTAPQ---LAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHAKS-- 124
Query: 498 IAHNYLNSSAVHLTEDYAAKLSDL------SFWNEIAMAE--------MXXXXXXXXXXX 543
           I H  L S+ + L ED   K+ D       S W+     E        M           
Sbjct: 125 IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKN 184
Query: 544 XXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 603
                 +VY FG++L+E++TG+LPY   N   +     ++ G    + ++ P LS     
Sbjct: 185 PYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ---IIFMVG----RGYLSPDLSKVRSN 237
Query: 604 QLETLGELIKSCVRADPEKRPTMRDIAA 631
             + +  L+  C++   ++RP    I A
Sbjct: 238 CPKAMKRLMAECLKKKRDERPLFPQILA 265

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 122/295 (41%), Gaps = 37/295 (12%)
Query: 359 VPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNL---E 415
           +P L  +E+E     +   IG    G V+KG L     +           +    +    
Sbjct: 13  LPTLADNEIE-----YEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKF 67
Query: 416 VQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWG 475
            +F++++  +S +NH N V L G           MV E+ P G L+ H  + ++  + W 
Sbjct: 68  QEFQREVFIMSNLNHPNIVKLYGLMHNPP----RMVMEFVPCGDLY-HRLLDKAHPIKWS 122
Query: 476 MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE-----DYAAKLSDLSFWNE---- 526
           ++LR+ + +A  +E+M   NPPI H  L S  + L          AK++D S   +    
Sbjct: 123 VKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFSLSQQSVHS 182
Query: 527 ----IAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY 582
               +   +                  + Y+F ++L+ ++TG  P+       ++++   
Sbjct: 183 VSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPF-------DEYSYGK 235
Query: 583 LSGVQPL-QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
           +  +  + ++ + PT+    E+    L  +I+ C   DP+KRP    I   L E+
Sbjct: 236 IKFINMIREEGLRPTIP---EDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 114/274 (41%), Gaps = 32/274 (11%)
Query: 378 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 437
           IGS   GTVYKG     V +             P+ L+  F+ ++  L K  H N +  +
Sbjct: 32  IGSGSFGTVYKGKWHGDVAVKMLNVTAPT----PQQLQA-FKNEVGVLRKTRHVNILLFM 86
Query: 438 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPP 497
           G+    +     +V ++    +L+ H+H  E++  +    + IA   A  ++++H  +  
Sbjct: 87  GYSTAPQ---LAIVTQWCEGSSLYHHLHASETK-FEMKKLIDIARQTARGMDYLHAKS-- 140
Query: 498 IAHNYLNSSAVHLTEDYAAKLSDL------SFWNEIAMAE--------MXXXXXXXXXXX 543
           I H  L S+ + L ED   K+ D       S W+     E        M           
Sbjct: 141 IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSN 200
Query: 544 XXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 603
                 +VY FG++L+E++TG+LPY   N +  D   + +      +  + P LS     
Sbjct: 201 PYSFQSDVYAFGIVLYELMTGQLPY--SNINNRDQIIEMVG-----RGSLSPDLSKVRSN 253
Query: 604 QLETLGELIKSCVRADPEKRPTMRDIAAILREIT 637
             + +  L+  C++   ++RP+   I A + E+ 
Sbjct: 254 CPKRMKRLMAECLKKKRDERPSFPRILAEIEELA 287

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 121/295 (41%), Gaps = 37/295 (12%)
Query: 359 VPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNL---E 415
           +P L  +E+E     +   IG    G V+KG L     +           +    +    
Sbjct: 13  LPTLADNEIE-----YEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKF 67
Query: 416 VQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWG 475
            +F++++  +S +NH N V L G           MV E+ P G L+ H  + ++  + W 
Sbjct: 68  QEFQREVFIMSNLNHPNIVKLYGLMHNPP----RMVMEFVPCGDLY-HRLLDKAHPIKWS 122
Query: 476 MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE-----DYAAKLSDLSFWNE---- 526
           ++LR+ + +A  +E+M   NPPI H  L S  + L          AK++D     +    
Sbjct: 123 VKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVHS 182
Query: 527 ----IAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY 582
               +   +                  + Y+F ++L+ ++TG  P+       ++++   
Sbjct: 183 VSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPF-------DEYSYGK 235
Query: 583 LSGVQPL-QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
           +  +  + ++ + PT+    E+    L  +I+ C   DP+KRP    I   L E+
Sbjct: 236 IKFINMIREEGLRPTIP---EDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 121/295 (41%), Gaps = 37/295 (12%)
Query: 359 VPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNL---E 415
           +P L  +E+E     +   IG    G V+KG L     +           +    +    
Sbjct: 13  LPTLADNEIE-----YEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKF 67
Query: 416 VQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWG 475
            +F++++  +S +NH N V L G           MV E+ P G L+ H  + ++  + W 
Sbjct: 68  QEFQREVFIMSNLNHPNIVKLYGLMHNPP----RMVMEFVPCGDLY-HRLLDKAHPIKWS 122
Query: 476 MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE-----DYAAKLSDL--------S 522
           ++LR+ + +A  +E+M   NPPI H  L S  + L          AK++D         S
Sbjct: 123 VKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGTSQQSVHS 182
Query: 523 FWNEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY 582
               +   +                  + Y+F ++L+ ++TG  P+       ++++   
Sbjct: 183 VSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPF-------DEYSYGK 235
Query: 583 LSGVQPL-QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
           +  +  + ++ + PT+    E+    L  +I+ C   DP+KRP    I   L E+
Sbjct: 236 IKFINMIREEGLRPTIP---EDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 114/269 (42%), Gaps = 27/269 (10%)
Query: 378 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 437
           IG+   GTV++    +G ++          +D+      +F +++  + ++ H N V  +
Sbjct: 45  IGAGSFGTVHRAEW-HGSDVAVKILME---QDFHAERVNEFLREVAIMKRLRHPNIVLFM 100
Query: 438 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKES-EHLDWGMRLRIAMGMAYCLEHMHQLNP 496
           G   +  P    +V EY   G+L+  +H   + E LD   RL +A  +A  + ++H  NP
Sbjct: 101 GAVTQ--PPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNP 158
Query: 497 PIAHNYLNSSAVHLTEDYAAKLSDLS---------FWNEIAMAEMXXXXXXXXXXXXXXX 547
           PI H  L S  + + + Y  K+ D             ++ A                   
Sbjct: 159 PIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKASXFLXSKXAAGTPEWMAPEVLRDEPSNE 218
Query: 548 XXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLET 607
             +VY+FGV+L+E+ T + P+   N +    A  +      + + ++P +++        
Sbjct: 219 KSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKCKRLEIPRNLNPQVAA-------- 270
Query: 608 LGELIKSCVRADPEKRPTMRDIAAILREI 636
              +I+ C   +P KRP+   I  +LR +
Sbjct: 271 ---IIEGCWTNEPWKRPSFATIMDLLRPL 296

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 114/269 (42%), Gaps = 27/269 (10%)
Query: 378 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 437
           IG+   GTV++    +G ++          +D+      +F +++  + ++ H N V  +
Sbjct: 45  IGAGSFGTVHRAEW-HGSDVAVKILME---QDFHAERVNEFLREVAIMKRLRHPNIVLFM 100
Query: 438 GFCEEEEPFTRMMVFEYAPNGTLFEHIHIKES-EHLDWGMRLRIAMGMAYCLEHMHQLNP 496
           G   +  P    +V EY   G+L+  +H   + E LD   RL +A  +A  + ++H  NP
Sbjct: 101 GAVTQ--PPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNP 158
Query: 497 PIAHNYLNSSAVHLTEDYAAKLSDLS---------FWNEIAMAEMXXXXXXXXXXXXXXX 547
           PI H  L S  + + + Y  K+ D             ++ A                   
Sbjct: 159 PIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNE 218
Query: 548 XXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLET 607
             +VY+FGV+L+E+ T + P+   N +    A  +      + + ++P +++        
Sbjct: 219 KSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKCKRLEIPRNLNPQVAA-------- 270
Query: 608 LGELIKSCVRADPEKRPTMRDIAAILREI 636
              +I+ C   +P KRP+   I  +LR +
Sbjct: 271 ---IIEGCWTNEPWKRPSFATIMDLLRPL 296

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 111/276 (40%), Gaps = 48/276 (17%)
Query: 378 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-FRKKIDTLSKVNHKNFVNL 436
           +G    G V+ GT +    +             P N+  + F ++   + K+ H+  V L
Sbjct: 193 LGQGCFGEVWMGTWNGTTRVAIKTLK-------PGNMSPEAFLQEAQVMKKLRHEKLVQL 245
Query: 437 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRLRIAMGMAYCLEHMH 492
                EE  +   +V EY   G+L + +  +  ++L       M  +IA GMAY +E M+
Sbjct: 246 YAVVSEEPIY---IVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAY-VERMN 301
Query: 493 QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI----------AMAEMXXXXXXXXXX 542
            +     H  L ++ + + E+   K++D      I          A   +          
Sbjct: 302 YV-----HRDLRAANILVGENLVCKVADFGLGRLIEDNEYTARQGAKFPIKWTAPEAALY 356
Query: 543 XXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAADYLSGVQPLQQFVDPTLSS 599
                  +V++FG+LL E+ T GR+PY  +V+   L+     Y     P           
Sbjct: 357 GRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPP----------- 405
Query: 600 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
              E  E+L +L+  C R DPE+RPT   + A L +
Sbjct: 406 ---ECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 438

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 474
           F ++   + K+ H+  V L     EE  +   +V EY   G+L + +  +  ++L     
Sbjct: 60  FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVIEYMSKGSLLDFLKGEMGKYLRLPQL 116
Query: 475 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 527
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 117 VDMAAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEXT 170
Query: 528 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 580
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 171 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 230
Query: 581 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
            Y     P              E  E+L +L+  C R DPE+RPT   + A L +
Sbjct: 231 GYRMPCPP--------------ECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 271

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 474
           F ++   + K+ H+  V L     EE  +   +V EY   G+L + +  +  ++L     
Sbjct: 60  FLQEAQVMKKIRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFLKGEMGKYLRLPQL 116
Query: 475 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 527
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 117 VDMAAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEYT 170
Query: 528 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 580
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 171 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 230
Query: 581 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
            Y     P              E  E+L +L+  C R DPE+RPT   + A L +
Sbjct: 231 GYRMPCPP--------------ECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 271

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 474
           F ++   + K+ H+  V L     EE  +   +V EY   G+L + +  +  ++L     
Sbjct: 60  FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVIEYMSKGSLLDFLKGEMGKYLRLPQL 116
Query: 475 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 527
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 117 VDMAAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEYT 170
Query: 528 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 580
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 171 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 230
Query: 581 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
            Y     P              E  E+L +L+  C R DPE+RPT   + A L +
Sbjct: 231 GYRMPCPP--------------ECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 271

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 97/235 (41%), Gaps = 40/235 (17%)
Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 474
           F ++   + K+ H+  V L     EE  +   +V EY   G L + +  +  ++L     
Sbjct: 60  FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVMEYMSKGCLLDFLKGEMGKYLRLPQL 116
Query: 475 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 527
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 117 VDMAAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEYT 170
Query: 528 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 580
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 171 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 230
Query: 581 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
            Y     P              E  E+L +L+  C R DPE+RPT   + A L +
Sbjct: 231 GYRMPCPP--------------ECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 271

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 474
           F ++   + K+ H+  V L     EE  +   +V EY   G+L + +  +  ++L     
Sbjct: 60  FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVCEYMSKGSLLDFLKGEMGKYLRLPQL 116
Query: 475 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 527
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 117 VDMAAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEYT 170
Query: 528 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 580
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 171 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 230
Query: 581 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
            Y     P              E  E+L +L+  C R DPE+RPT   + A L +
Sbjct: 231 GYRMPCPP--------------ECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 271

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 474
           F ++   + K+ H+  V L     EE  +   +V EY   G+L + +  +  ++L     
Sbjct: 49  FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFLKGEMGKYLRLPQL 105
Query: 475 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 527
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 106 VDMAAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEYT 159
Query: 528 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 580
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 160 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 219
Query: 581 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
            Y     P              E  E+L +L+  C R DPE+RPT   + A L +
Sbjct: 220 GYRMPCPP--------------ECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 260

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 474
           F ++   + K+ H+  V L     EE  +   +V EY   G+L + +  +  ++L     
Sbjct: 51  FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFLKGEMGKYLRLPQL 107
Query: 475 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 527
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 108 VDMAAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEYT 161
Query: 528 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 580
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 162 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 221
Query: 581 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
            Y     P              E  E+L +L+  C R DPE+RPT   + A L +
Sbjct: 222 GYRMPCPP--------------ECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 262

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 474
           F ++   + K+ H+  V L     EE  +   +V EY   G+L + +  +  ++L     
Sbjct: 60  FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFLKGEMGKYLRLPQL 116
Query: 475 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 527
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 117 VDMAAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEYT 170
Query: 528 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 580
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 171 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 230
Query: 581 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
            Y     P              E  E+L +L+  C R DPE+RPT   + A L +
Sbjct: 231 GYRMPCPP--------------ECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 271

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 474
           F ++   + K+ H+  V L     EE  +   +V EY   G+L + +  +  ++L     
Sbjct: 60  FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFLKGEMGKYLRLPQL 116
Query: 475 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 527
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 117 VDMAAQIASGMAY-VERMNYV-----HRDLAAANILVGENLVCKVADFGLARLIEDNEYT 170
Query: 528 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 580
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 171 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 230
Query: 581 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
            Y     P              E  E+L +L+  C R DPE+RPT   + A L +
Sbjct: 231 GYRMPCPP--------------ECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 271

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 97/235 (41%), Gaps = 40/235 (17%)
Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 474
           F ++   + K+ H+  V L     EE  +   +V EY   G L + +  +  ++L     
Sbjct: 60  FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGCLLDFLKGEMGKYLRLPQL 116
Query: 475 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 527
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 117 VDMAAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEYT 170
Query: 528 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 580
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 171 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 230
Query: 581 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
            Y     P              E  E+L +L+  C R DPE+RPT   + A L +
Sbjct: 231 GYRMPCPP--------------ECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 271

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 474
           F ++   + K+ H+  V L     EE  +   +V EY   G+L + +  +  ++L     
Sbjct: 309 FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFLKGETGKYLRLPQL 365
Query: 475 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 527
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 366 VDMAAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEYT 419
Query: 528 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 580
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 420 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 479
Query: 581 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
            Y     P              E  E+L +L+  C R +PE+RPT   + A L +
Sbjct: 480 GYRMPCPP--------------ECPESLHDLMCQCWRKEPEERPTFEYLQAFLED 520

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 474
           F ++   + K+ H+  V L     EE  +   +V EY   G+L + +  +  ++L     
Sbjct: 226 FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFLKGETGKYLRLPQL 282
Query: 475 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 527
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 283 VDMAAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEYT 336
Query: 528 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 580
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 337 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 396
Query: 581 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
            Y     P              E  E+L +L+  C R +PE+RPT   + A L +
Sbjct: 397 GYRMPCPP--------------ECPESLHDLMCQCWRKEPEERPTFEYLQAFLED 437

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 474
           F ++   + K+ H+  V L     EE  +   +V EY   G+L + +  +  ++L     
Sbjct: 226 FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFLKGETGKYLRLPQL 282
Query: 475 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 527
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 283 VDMAAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEYT 336
Query: 528 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 580
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 337 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 396
Query: 581 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
            Y     P              E  E+L +L+  C R +PE+RPT   + A L +
Sbjct: 397 GYRMPCPP--------------ECPESLHDLMCQCWRKEPEERPTFEYLQAFLED 437

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 474
           F ++   + K+ H+  V L     EE  +   +V EY   G+L + +  +  ++L     
Sbjct: 226 FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVGEYMSKGSLLDFLKGETGKYLRLPQL 282
Query: 475 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 527
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 283 VDMAAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEYT 336
Query: 528 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 580
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 337 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 396
Query: 581 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
            Y     P              E  E+L +L+  C R +PE+RPT   + A L +
Sbjct: 397 GYRMPCPP--------------ECPESLHDLMCQCWRKEPEERPTFEYLQAFLED 437

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 474
           F ++   + K+ H+  V L     EE  +   +V EY   G+L + +  +  ++L     
Sbjct: 53  FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFLKGETGKYLRLPQL 109
Query: 475 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 527
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 110 VDMAAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEYT 163
Query: 528 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 580
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 164 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 223
Query: 581 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
            Y     P              E  E+L +L+  C R +PE+RPT   + A L +
Sbjct: 224 GYRMPCPP--------------ECPESLHDLMCQCWRKEPEERPTFEYLQAFLED 264

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 474
           F ++   + K+ H+  V L     EE  +   +V EY   G+L + +  +  ++L     
Sbjct: 57  FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVTEYMNKGSLLDFLKGETGKYLRLPQL 113
Query: 475 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 527
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 114 VDMSAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEWT 167
Query: 528 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 580
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 168 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 227
Query: 581 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
            Y     P              E  E+L +L+  C R +PE+RPT   + A L +
Sbjct: 228 GYRMPCPP--------------ECPESLHDLMCQCWRKEPEERPTFEYLQAFLED 268

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 474
           F ++   + K+ H+  V L     EE  +   +V EY   G+L + +  +  ++L     
Sbjct: 57  FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVTEYMNKGSLLDFLKGETGKYLRLPQL 113
Query: 475 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 527
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 114 VDMSAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEYT 167
Query: 528 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 580
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 168 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 227
Query: 581 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
            Y     P              E  E+L +L+  C R +PE+RPT   + A L +
Sbjct: 228 GYRMPCPP--------------ECPESLHDLMCQCWRKEPEERPTFEYLQAFLED 268

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 474
           F ++   + K+ H+  V L     EE P    +V EY   G+L + +  +  ++L     
Sbjct: 50  FLQEAQVMKKLRHEKLVQLYAVVSEE-PIX--IVTEYMSKGSLLDFLKGETGKYLRLPQL 106
Query: 475 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI------ 527
             M  +IA GMAY +E M+ +     H  L ++ + + E+   K++D      I      
Sbjct: 107 VDMAAQIASGMAY-VERMNYV-----HRDLRAANILVGENLVCKVADFGLARLIEDNEXT 160
Query: 528 ----AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 580
               A   +                 +V++FG+LL E+ T GR+PY  +V+   L+    
Sbjct: 161 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 220
Query: 581 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
            Y     P              E  E+L +L+  C R +PE+RPT   + A L +
Sbjct: 221 GYRMPCPP--------------ECPESLHDLMCQCWRKEPEERPTFEYLQAFLED 261

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 112/285 (39%), Gaps = 45/285 (15%)
Query: 374 FSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNF 433
           F   IGS   G V+ G   N  ++                 E  F ++ + + K++H   
Sbjct: 14  FVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS------EEDFIEEAEVMMKLSHPKL 67
Query: 434 VNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE----SEHLDWGMRLRIAMGMAYCLE 489
           V L G C E+ P    +VFE+  +G L +++  +     +E L  GM L +  GMAY  E
Sbjct: 68  VQLYGVCLEQAPIC--LVFEFMEHGCLSDYLRTQRGLFAAETL-LGMCLDVCEGMAYLEE 124
Query: 490 HMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMXXXXXXXX--------- 540
                   + H  L +    + E+   K+SD      +   +                  
Sbjct: 125 ------ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEV 178
Query: 541 -XXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS 598
                     +V++FGVL++E+ + G++PY  +N S  +   D  +G +       P L+
Sbjct: 179 FSFSRYSSKSDVWSFGVLMWEVFSEGKIPY--ENRSNSEVVEDISTGFR----LYKPRLA 232
Query: 599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDG 643
           S    Q+      +  C R  PE RP     + +LR++  I   G
Sbjct: 233 STHVYQI------MNHCWRERPEDRPA---FSRLLRQLAEIAESG 268

>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a Double Mutant Length = 328

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 96/230 (41%), Gaps = 33/230 (14%)
Query: 411 PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKE 468
           P +L+  FR+ +  +  +NH N V L    E E+  T  ++ EYA  G +F+++  H + 
Sbjct: 55  PTSLQKLFRE-VRIMKILNHPNIVKLFEVIETEK--TLYLIMEYASGGEVFDYLVAHGRM 111
Query: 469 SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA 528
            E        +I   + YC    HQ    I H  L +  + L  D   K++D  F NE  
Sbjct: 112 KEKEARSKFRQIVSAVQYC----HQ--KRIVHRDLKAENLLLDADMNIKIADFGFSNEFT 165
Query: 529 M---------AEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWA 579
           +         A                   +V++ GV+L+ +V+G LP+  D  +L++  
Sbjct: 166 VGGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF--DGQNLKELR 223
Query: 580 ADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
              L G     ++  P   S D E       L+K  +  +P KR T+  I
Sbjct: 224 ERVLRG-----KYRIPFYMSTDCEN------LLKRFLVLNPIKRGTLEQI 262

>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Inactive Double Mutant With Selenomethionine Length = 327

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 91/235 (38%), Gaps = 32/235 (13%)
Query: 428 VNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHLDWGMRLRIAMGMA 485
           +NH N V L    E E+  T  +V EYA  G +F+++  H +  E        +I   + 
Sbjct: 70  LNHPNIVKLFEVIETEK--TLYLVXEYASGGEVFDYLVAHGRXKEKEARAKFRQIVSAVQ 127
Query: 486 YCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---------AEMXXXX 536
           YC +        I H  L +  + L  D   K++D  F NE            A      
Sbjct: 128 YCHQKF------IVHRDLKAENLLLDADXNIKIADFGFSNEFTFGNKLDAFCGAPPYAAP 181
Query: 537 XXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT 596
                        +V++ GV+L+ +V+G LP+  D  +L++     L G     ++  P 
Sbjct: 182 ELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF--DGQNLKELRERVLRG-----KYRIPF 234
Query: 597 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPL 651
             S D E       L+K  +  +P KR T+  I        G   D   P + PL
Sbjct: 235 YXSTDCEN------LLKKFLILNPSKRGTLEQIXKDRWXNVGHEDDELKPYVEPL 283

>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7 Length = 310

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 95/234 (40%), Gaps = 28/234 (11%)
Query: 420 KKIDTLSKVNHKNFVNLIG-FCEEEEPFTRMMVFEYAPNGTLFEHI-HIKESEHLDWGMR 477
           K+ID L ++NH N +     F E+ E     +V E A  G L   I H K+ + L     
Sbjct: 81  KEIDLLKQLNHPNVIKYYASFIEDNE---LNIVLELADAGDLSRMIKHFKKQKRLIPERT 137
Query: 478 L-RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLS---FWNEIAMAEMX 533
           + +  + +   LEHMH     + H  +  + V +T     KL DL    F++    A   
Sbjct: 138 VWKYFVQLCSALEHMHSRR--VMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAA-H 194
Query: 534 XXXXXXXXXXXXXXXXNVYNF-------GVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV 586
                           N YNF       G LL+EM   + P+  D  +L        S  
Sbjct: 195 SLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNL-------YSLC 247
Query: 587 QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT 640
           + ++Q   P L S  +   E L +L+  C+  DPEKRP +  +  + + +   T
Sbjct: 248 KKIEQCDYPPLPS--DHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACT 299

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 35/227 (15%)
Query: 417 QFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGM 476
           +F K+   + ++ H N V L+G C  E PF   +V EY P G L +++     E +   +
Sbjct: 74  EFLKEAAVMKEIKHPNLVQLLGVCTLEPPF--YIVTEYMPYGNLLDYLRECNREEVTAVV 131
Query: 477 RLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------WNEIA 528
            L +A  ++  +E++ + N    H  L +    + E++  K++D           +   A
Sbjct: 132 LLYMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHVVKVADFGLSRLMTGDTYTAHA 189
Query: 529 MAE--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSG 585
            A+  +                 +V+ FGVLL+E+ T G  PY                G
Sbjct: 190 GAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPY---------------PG 234
Query: 586 VQPLQQFVDPTLSSFDEEQLE----TLGELIKSCVRADPEKRPTMRD 628
           +  L Q  D     +  EQ E     + EL+++C +  P  RP+  +
Sbjct: 235 ID-LSQVYDLLEKGYRMEQPEGCPPKVYELMRACWKWSPADRPSFAE 280

>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk Length = 476

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 90/228 (39%), Gaps = 40/228 (17%)
Query: 417 QFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESEHL 472
           + R++I  L    H + + L        P    MV EY   G LF++I     + E E  
Sbjct: 62  KIRREIQNLKLFRHPHIIKLYQVIST--PSDIFMVMEYVSGGELFDYICKNGRLDEKE-- 117
Query: 473 DWGMRL--RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA 530
               RL  +I  G+ YC  HM      + H  L    V L     AK++D    N ++  
Sbjct: 118 --SRRLFQQILSGVDYCHRHM------VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG 169
Query: 531 EM---------XXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAAD 581
           E                           ++++ GV+L+ ++ G LP+  D+  +      
Sbjct: 170 EFLRXSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPF--DDDHVPTLFKK 227
Query: 582 YLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
              G+    Q+++P++ S           L+K  ++ DP KR T++DI
Sbjct: 228 ICDGIFYTPQYLNPSVIS-----------LLKHMLQVDPMKRATIKDI 264

>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1 Length = 328

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 95/230 (41%), Gaps = 33/230 (14%)
Query: 411 PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKE 468
           P +L+  FR+ +  +  +NH N V L    E E+  T  ++ EYA  G +F+++  H + 
Sbjct: 52  PTSLQKLFRE-VRIMKILNHPNIVKLFEVIETEK--TLYLIMEYASGGEVFDYLVAHGRM 108
Query: 469 SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA 528
            E        +I   + YC    HQ    I H  L +  + L  D   K++D  F NE  
Sbjct: 109 KEKEARSKFRQIVSAVQYC----HQ--KRIVHRDLKAENLLLDADMNIKIADFGFSNEFT 162
Query: 529 MAEM---------XXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWA 579
           +                             +V++ GV+L+ +V+G LP+  D  +L++  
Sbjct: 163 VGGKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF--DGQNLKELR 220
Query: 580 ADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
              L G     ++  P   S D E       L+K  +  +P KR T+  I
Sbjct: 221 ERVLRG-----KYRIPFYMSTDCEN------LLKRFLVLNPIKRGTLEQI 259

>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant Length = 327

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 96/243 (39%), Gaps = 32/243 (13%)
Query: 420 KKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHLDWGMR 477
           +++  +  +NH N V L    E E+  T  +V EYA  G +F+++  H +  E       
Sbjct: 62  REVRIMKVLNHPNIVKLFEVIETEK--TLYLVMEYASGGEVFDYLVAHGRMKEKEARAKF 119
Query: 478 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM----- 532
            +I   + YC    HQ    I H  L +  + L  D   K++D  F NE           
Sbjct: 120 RQIVSAVQYC----HQ--KFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDTFC 173
Query: 533 ----XXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP 588
                                +V++ GV+L+ +V+G LP+  D  +L++     L G   
Sbjct: 174 GSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF--DGQNLKELRERVLRG--- 228
Query: 589 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKL 648
             ++  P   S D E       L+K  +  +P KR T+  I        G   D   P +
Sbjct: 229 --KYRIPFYMSTDCEN------LLKKFLILNPSKRGTLEQIMKDRWMNVGHEDDELKPYV 280
Query: 649 SPL 651
           +PL
Sbjct: 281 APL 283

>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: T208aS212A INACTIVE DOUBLE MUTANT Length = 327

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 96/243 (39%), Gaps = 32/243 (13%)
Query: 420 KKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHLDWGMR 477
           +++  +  +NH N V L    E E+  T  +V EYA  G +F+++  H +  E       
Sbjct: 62  REVRIMKVLNHPNIVKLFEVIETEK--TLYLVMEYASGGEVFDYLVAHGRMKEKEARAKF 119
Query: 478 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM-------- 529
            +I   + YC    HQ    I H  L +  + L  D   K++D  F NE           
Sbjct: 120 RQIVSAVQYC----HQ--KFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDAFC 173
Query: 530 -AEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP 588
            A                   +V++ GV+L+ +V+G LP+  D  +L++     L G   
Sbjct: 174 GAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF--DGQNLKELRERVLRG--- 228
Query: 589 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKL 648
             ++  P   S D E       L+K  +  +P KR T+  I        G   D   P +
Sbjct: 229 --KYRIPFYMSTDCEN------LLKKFLILNPSKRGTLEQIMKDRWMNVGHEDDELKPYV 280
Query: 649 SPL 651
            PL
Sbjct: 281 EPL 283

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 117/281 (41%), Gaps = 47/281 (16%)
Query: 378 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-FRKKIDTLSKVNHKNFVNL 436
           +G+   G V+ G  +N  ++             P  + VQ F ++ + +  + H   V L
Sbjct: 20  LGAGQFGEVWMGYYNNSTKVAVKTLK-------PGTMSVQAFLEEANLMKTLQHDKLVRL 72
Query: 437 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKES------EHLDWGMRLRIAMGMAYCLEH 490
                +EEP    ++ E+   G+L + +   E       + +D+  +  IA GMAY +E 
Sbjct: 73  YAVVTKEEPI--YIITEFMAKGSLLDFLKSDEGGKVLLPKLIDFSAQ--IAEGMAY-IER 127
Query: 491 MHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI----------AMAEMXXXXXXXX 540
            + +     H  L ++ V ++E    K++D      I          A   +        
Sbjct: 128 KNYI-----HRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAI 182
Query: 541 XXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS 599
                    NV++FG+LL+E+VT G++PY           AD +S +   Q +  P + +
Sbjct: 183 NFGCFTIKSNVWSFGILLYEIVTYGKIPYPGRTN------ADVMSALS--QGYRMPRMEN 234
Query: 600 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT 640
             +E    L +++K C +   E+RPT   + ++L +    T
Sbjct: 235 CPDE----LYDIMKMCWKEKAEERPTFDYLQSVLDDFYTAT 271

>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r, T208e Double Mutant Length = 327

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 95/243 (39%), Gaps = 32/243 (13%)
Query: 420 KKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHLDWGMR 477
           +++  +  +NH N V L    E E+  T  +V EYA  G +F+++  H +  E       
Sbjct: 62  REVRIMKVLNHPNIVKLFEVIETEK--TLYLVMEYASGGEVFDYLVAHGRMKEKEARAKF 119
Query: 478 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM----- 532
            +I   + YC    HQ    I H  L +  + L  D   K++D  F NE           
Sbjct: 120 RQIVSAVQYC----HQ--KFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDEFC 173
Query: 533 ----XXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP 588
                                +V++ GV+L+ +V+G LP+  D  +L++     L G   
Sbjct: 174 GSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF--DGQNLKELRERVLRG--- 228
Query: 589 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKL 648
             ++  P   S D E       L+K  +  +P KR T+  I        G   D   P +
Sbjct: 229 --KYRIPFYMSTDCEN------LLKKFLILNPSKRGTLEQIMKDRWMNVGHEDDELKPYV 280
Query: 649 SPL 651
            PL
Sbjct: 281 EPL 283

>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: K82r Mutant Length = 327

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 95/243 (39%), Gaps = 32/243 (13%)
Query: 420 KKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHLDWGMR 477
           +++  +  +NH N V L    E E+  T  +V EYA  G +F+++  H +  E       
Sbjct: 62  REVRIMKVLNHPNIVKLFEVIETEK--TLYLVMEYASGGEVFDYLVAHGRMKEKEARAKF 119
Query: 478 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM----- 532
            +I   + YC    HQ    I H  L +  + L  D   K++D  F NE           
Sbjct: 120 RQIVSAVQYC----HQ--KFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDTFC 173
Query: 533 ----XXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP 588
                                +V++ GV+L+ +V+G LP+  D  +L++     L G   
Sbjct: 174 GSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF--DGQNLKELRERVLRG--- 228
Query: 589 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKL 648
             ++  P   S D E       L+K  +  +P KR T+  I        G   D   P +
Sbjct: 229 --KYRIPFYMSTDCEN------LLKKFLILNPSKRGTLEQIMKDRWMNVGHEDDELKPYV 280
Query: 649 SPL 651
            PL
Sbjct: 281 EPL 283

>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Wild Type Length = 327

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 95/243 (39%), Gaps = 32/243 (13%)
Query: 420 KKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHLDWGMR 477
           +++  +  +NH N V L    E E+  T  +V EYA  G +F+++  H +  E       
Sbjct: 62  REVRIMKVLNHPNIVKLFEVIETEK--TLYLVMEYASGGEVFDYLVAHGRMKEKEARAKF 119
Query: 478 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM----- 532
            +I   + YC    HQ    I H  L +  + L  D   K++D  F NE           
Sbjct: 120 RQIVSAVQYC----HQ--KFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDTFC 173
Query: 533 ----XXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP 588
                                +V++ GV+L+ +V+G LP+  D  +L++     L G   
Sbjct: 174 GSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF--DGQNLKELRERVLRG--- 228
Query: 589 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKL 648
             ++  P   S D E       L+K  +  +P KR T+  I        G   D   P +
Sbjct: 229 --KYRIPFYMSTDCEN------LLKKFLILNPSKRGTLEQIMKDRWMNVGHEDDELKPYV 280
Query: 649 SPL 651
            PL
Sbjct: 281 EPL 283

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 111/285 (38%), Gaps = 45/285 (15%)
Query: 374 FSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNF 433
           F   IGS   G V+ G   N  ++                 E  F ++ + + K++H   
Sbjct: 12  FVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS------EEDFIEEAEVMMKLSHPKL 65
Query: 434 VNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE----SEHLDWGMRLRIAMGMAYCLE 489
           V L G C E+ P    +V E+  +G L +++  +     +E L  GM L +  GMAY  E
Sbjct: 66  VQLYGVCLEQAPIC--LVTEFMEHGCLSDYLRTQRGLFAAETL-LGMCLDVCEGMAYLEE 122
Query: 490 HMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMXXXXXXXX--------- 540
                   + H  L +    + E+   K+SD      +   +                  
Sbjct: 123 ------ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEV 176
Query: 541 -XXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS 598
                     +V++FGVL++E+ + G++PY  +N S  +   D  +G +       P L+
Sbjct: 177 FSFSRYSSKSDVWSFGVLMWEVFSEGKIPY--ENRSNSEVVEDISTGFR----LYKPRLA 230
Query: 599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDG 643
           S    Q+      +  C R  PE RP     + +LR++  I   G
Sbjct: 231 STHVYQI------MNHCWRERPEDRPA---FSRLLRQLAEIAESG 266

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 61/281 (21%), Positives = 116/281 (41%), Gaps = 47/281 (16%)
Query: 378 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-FRKKIDTLSKVNHKNFVNL 436
           +G+   G V+ G  +N  ++             P  + VQ F ++ + +  + H   V L
Sbjct: 21  LGAGQFGEVWMGYYNNSTKVAVKTLK-------PGTMSVQAFLEEANLMKTLQHDKLVRL 73
Query: 437 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKES------EHLDWGMRLRIAMGMAYCLEH 490
                 EEP    ++ EY   G+L + +   E       + +D+  +  IA GMAY +E 
Sbjct: 74  YAVVTREEPI--YIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQ--IAEGMAY-IER 128
Query: 491 MHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI----------AMAEMXXXXXXXX 540
            + +     H  L ++ V ++E    K++D      I          A   +        
Sbjct: 129 KNYI-----HRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAI 183
Query: 541 XXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS 599
                    +V++FG+LL+E+VT G++PY           AD ++ +   Q +  P + +
Sbjct: 184 NFGCFTIKSDVWSFGILLYEIVTYGKIPYPGRTN------ADVMTALS--QGYRMPRVEN 235
Query: 600 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT 640
             +E    L +++K C +   E+RPT   + ++L +    T
Sbjct: 236 CPDE----LYDIMKMCWKEKAEERPTFDYLQSVLDDFYTAT 272

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 113/284 (39%), Gaps = 27/284 (9%)
Query: 365 SELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXK-DWPKNLEVQFRKKID 423
           +E+  +C     VIG+   G VYKG L                K  + +   V F  +  
Sbjct: 39  TEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAG 98
Query: 424 TLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW---GMRLRI 480
            + + +H N + L G   + +P   M++ EY  NG L + +  K+ E       GM   I
Sbjct: 99  IMGQFSHHNIIRLEGVISKYKPM--MIITEYMENGALDKFLREKDGEFSVLQLVGMLRGI 156
Query: 481 AMGMAYCLEHMHQLNPPIAHN--YLNSSAVHLTEDYAAKL-----SDLSFWNEIAMAEMX 533
           A GM Y L +M+ ++  +A     +NS+ V    D+          + ++        + 
Sbjct: 157 AAGMKY-LANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIR 215
Query: 534 XXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQF 592
                           +V++FG++++E++T G  PY         W    LS  + ++  
Sbjct: 216 WTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPY---------WE---LSNHEVMKAI 263
Query: 593 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
            D        +    + +L+  C + +  +RP   DI +IL ++
Sbjct: 264 NDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKL 307

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 10/158 (6%)
Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR 477
           F  +   ++++ H N V L+G   EE+     +V EY   G+L +++  +    L     
Sbjct: 52  FLAEASVMTQLRHSNLVQLLGVIVEEKG-GLYIVTEYMAKGSLVDYLRSRGRSVLGGDCL 110
Query: 478 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE------ 531
           L+ ++ +   +E++   N    H  L +  V ++ED  AK+SD     E +  +      
Sbjct: 111 LKFSLDVCEAMEYLEGNN--FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLP 168
Query: 532 MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY 568
           +                 +V++FG+LL+E+ + GR+PY
Sbjct: 169 VKWTAPEALREAAFSTKSDVWSFGILLWEIYSFGRVPY 206

>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1 Length = 328

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 22/186 (11%)
Query: 411 PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKE 468
           P +L+  FR+ +  +  +NH N V L    E E+  T  +V EYA  G +F+++  H + 
Sbjct: 55  PTSLQKLFRE-VRIMKILNHPNIVKLFEVIETEK--TLYLVMEYASGGEVFDYLVAHGRM 111
Query: 469 SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA 528
            E        +I   + YC    HQ    I H  L +  + L  D   K++D  F NE  
Sbjct: 112 KEKEARAKFRQIVSAVQYC----HQ--KYIVHRDLKAENLLLDGDMNIKIADFGFSNEFT 165
Query: 529 MAEM---------XXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWA 579
           +                             +V++ GV+L+ +V+G LP+  D  +L++  
Sbjct: 166 VGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF--DGQNLKELR 223
Query: 580 ADYLSG 585
              L G
Sbjct: 224 ERVLRG 229

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 10/158 (6%)
Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR 477
           F  +   ++++ H N V L+G   EE+     +V EY   G+L +++  +    L     
Sbjct: 61  FLAEASVMTQLRHSNLVQLLGVIVEEKG-GLYIVTEYMAKGSLVDYLRSRGRSVLGGDCL 119
Query: 478 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE------ 531
           L+ ++ +   +E++   N    H  L +  V ++ED  AK+SD     E +  +      
Sbjct: 120 LKFSLDVCEAMEYLEGNN--FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLP 177
Query: 532 MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY 568
           +                 +V++FG+LL+E+ + GR+PY
Sbjct: 178 VKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPY 215

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 10/158 (6%)
Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR 477
           F  +   ++++ H N V L+G   EE+     +V EY   G+L +++  +    L     
Sbjct: 46  FLAEASVMTQLRHSNLVQLLGVIVEEKG-GLYIVTEYMAKGSLVDYLRSRGRSVLGGDCL 104
Query: 478 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE------ 531
           L+ ++ +   +E++   N    H  L +  V ++ED  AK+SD     E +  +      
Sbjct: 105 LKFSLDVCEAMEYLEGNN--FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLP 162
Query: 532 MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY 568
           +                 +V++FG+LL+E+ + GR+PY
Sbjct: 163 VKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPY 200

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 96/247 (38%), Gaps = 33/247 (13%)
Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR 477
           F  ++  LS+VNH N V L G C         +V EYA  G+L+  +H   +E L +   
Sbjct: 49  FIVELRQLSRVNHPNIVKLYGACLN----PVCLVMEYAEGGSLYNVLH--GAEPLPY--- 99
Query: 478 LRIAMGMAYCLE------HMHQLNP-PIAHNYLNSSAVHLTEDYAA-KLSDLSFWNEIAM 529
              A  M++CL+      ++H + P  + H  L    + L       K+ D     +I  
Sbjct: 100 YTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQT 159
Query: 530 AEMXXXXXXXXXXXXXXXXXN------VYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYL 583
                               N      V+++G++L+E++T R P+    G          
Sbjct: 160 HMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVH 219
Query: 584 SGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDG 643
           +G +P      P + +      + +  L+  C   DP +RP+M +I  I+  +    P  
Sbjct: 220 NGTRP------PLIKNLP----KPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPGA 269
Query: 644 AIPKLSP 650
             P   P
Sbjct: 270 DEPLQYP 276

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 10/158 (6%)
Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR 477
           F  +   ++++ H N V L+G   EE+     +V EY   G+L +++  +    L     
Sbjct: 233 FLAEASVMTQLRHSNLVQLLGVIVEEKG-GLYIVTEYMAKGSLVDYLRSRGRSVLGGDCL 291
Query: 478 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE------ 531
           L+ ++ +   +E++   N    H  L +  V ++ED  AK+SD     E +  +      
Sbjct: 292 LKFSLDVCEAMEYLEGNN--FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLP 349
Query: 532 MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY 568
           +                 +V++FG+LL+E+ + GR+PY
Sbjct: 350 VKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPY 387

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 96/247 (38%), Gaps = 33/247 (13%)
Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR 477
           F  ++  LS+VNH N V L G C         +V EYA  G+L+  +H   +E L +   
Sbjct: 48  FIVELRQLSRVNHPNIVKLYGACLN----PVCLVMEYAEGGSLYNVLH--GAEPLPY--- 98
Query: 478 LRIAMGMAYCLE------HMHQLNP-PIAHNYLNSSAVHLTEDYAA-KLSDLSFWNEIAM 529
              A  M++CL+      ++H + P  + H  L    + L       K+ D     +I  
Sbjct: 99  YTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQT 158
Query: 530 AEMXXXXXXXXXXXXXXXXXN------VYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYL 583
                               N      V+++G++L+E++T R P+    G          
Sbjct: 159 HMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVH 218
Query: 584 SGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDG 643
           +G +P      P + +      + +  L+  C   DP +RP+M +I  I+  +    P  
Sbjct: 219 NGTRP------PLIKNLP----KPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPGA 268
Query: 644 AIPKLSP 650
             P   P
Sbjct: 269 DEPLQYP 275

>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES BY Mimicking Host Substrates Length = 319

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 94/243 (38%), Gaps = 32/243 (13%)
Query: 420 KKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHLDWGMR 477
           +++  +  +NH N V L    E E+  T  +V EYA  G +F+++  H    E       
Sbjct: 55  REVRIMKVLNHPNIVKLFEVIETEK--TLYLVMEYASGGEVFDYLVAHGWMKEKEARAKF 112
Query: 478 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM----- 532
            +I   + YC    HQ    I H  L +  + L  D   K++D  F NE           
Sbjct: 113 RQIVSAVQYC----HQ--KFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDTFC 166
Query: 533 ----XXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP 588
                                +V++ GV+L+ +V+G LP+  D  +L++     L G   
Sbjct: 167 GSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF--DGQNLKELRERVLRG--- 221
Query: 589 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKL 648
             ++  P   S D E       L+K  +  +P KR T+  I        G   D   P +
Sbjct: 222 --KYRIPFYMSTDCEN------LLKKFLILNPSKRGTLEQIMKDRWMNVGHEDDELKPYV 273
Query: 649 SPL 651
            PL
Sbjct: 274 EPL 276

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 106/274 (38%), Gaps = 44/274 (16%)
Query: 378 IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-FRKKIDTLSKVNHKNFVNL 436
           +G+   G V+ GT +   ++             P  +  + F ++   + K+ H   V L
Sbjct: 17  LGNGQFGEVWMGTWNGNTKVAIKTLK-------PGTMSPESFLEEAQIMKKLKHDKLVQL 69
Query: 437 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRLRIAMGMAYCLEHMH 492
                EE  +   +V EY   G+L + +   E   L       M  ++A GMAY +E M+
Sbjct: 70  YAVVSEEPIY---IVTEYMNKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAY-IERMN 125
Query: 493 QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI----------AMAEMXXXXXXXXXX 542
            +     H  L S+ + +      K++D      I          A   +          
Sbjct: 126 YI-----HRDLRSANILVGNGLICKIADFGLARLIEDNEXTARQGAKFPIKWTAPEAALY 180
Query: 543 XXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD 601
                  +V++FG+LL E+VT GR+PY   N        + L  V+   +   P      
Sbjct: 181 GRFTIKSDVWSFGILLTELVTKGRVPYPGMNNR------EVLEQVERGYRMPCPQDCPI- 233
Query: 602 EEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
                +L EL+  C + DPE+RPT   + + L +
Sbjct: 234 -----SLHELMIHCWKKDPEERPTFEYLQSFLED 262

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/291 (20%), Positives = 117/291 (40%), Gaps = 42/291 (14%)
Query: 355 FVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNL 414
           +  G P   + E+E       + +G    G VY+G      +           +D    +
Sbjct: 11  YFQGSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TM 64
Query: 415 EVQ-FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD 473
           EV+ F K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + ++
Sbjct: 65  EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVN 122
Query: 474 WGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------WN 525
             + L +A  ++  +E++ + N    H  L +    + E++  K++D           + 
Sbjct: 123 AVVLLYMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYT 180
Query: 526 EIAMAE--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADY 582
             A A+  +                 +V+ FGVLL+E+ T G  PY              
Sbjct: 181 AHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY-------------- 226
Query: 583 LSGVQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 629
             G+  L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 227 -PGID-LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 275

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 108/282 (38%), Gaps = 38/282 (13%)
Query: 366 ELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTL 425
           E++ A      +IG    G VY+     G E+          +D  + +E   R++    
Sbjct: 3   EIDFAELTLEEIIGIGGFGKVYRA-FWIGDEVAVKAARHDPDEDISQTIE-NVRQEAKLF 60
Query: 426 SKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTL---FEHIHIKESEHLDWGMRLRIAM 482
           + + H N + L G C +E      +V E+A  G L        I     ++W   ++IA 
Sbjct: 61  AMLKHPNIIALRGVCLKEPNLC--LVMEFARGGPLNRVLSGKRIPPDILVNWA--VQIAR 116
Query: 483 GMAYCLEHMHQLNPPIAHNYLNSSAVHLTE--------DYAAKLSDLSF---WNEI---- 527
           GM Y  +   +   PI H  L SS + + +        +   K++D      W+      
Sbjct: 117 GMNYLHD---EAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMS 173
Query: 528 AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ 587
           A                     +V+++GVLL+E++TG +P+      ++  A  Y   + 
Sbjct: 174 AAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPF----RGIDGLAVAYGVAMN 229
Query: 588 PLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
            L   +  T         E   +L++ C   DP  RP+  +I
Sbjct: 230 KLALPIPSTCP-------EPFAKLMEDCWNPDPHSRPSFTNI 264

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 115/288 (39%), Gaps = 42/288 (14%)
Query: 358 GVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ 417
           G P   + E+E       + +G    G VY+G      +           +D    +EV+
Sbjct: 1   GSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVE 54
Query: 418 -FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGM 476
            F K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + +   +
Sbjct: 55  EFLKEAAVMKEIKHPNLVQLLGVCTREPPF--YIIIEFMTYGNLLDYLRECNRQEVSAVV 112
Query: 477 RLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------WNEIA 528
            L +A  ++  +E++ + N    H  L +    + E++  K++D           +   A
Sbjct: 113 LLYMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 170
Query: 529 MAE--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSG 585
            A+  +                 +V+ FGVLL+E+ T G  PY                G
Sbjct: 171 GAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PG 215
Query: 586 VQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 629
           +  L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 216 ID-LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 262

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 115/288 (39%), Gaps = 42/288 (14%)
Query: 358 GVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ 417
           G P   + E+E       + +G    G VY+G      +           +D    +EV+
Sbjct: 1   GSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVE 54
Query: 418 -FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGM 476
            F K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + +   +
Sbjct: 55  EFLKEAAVMKEIKHPNLVQLLGVCTREPPF--YIIIEFMTYGNLLDYLRECNRQEVSAVV 112
Query: 477 RLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------WNEIA 528
            L +A  ++  +E++ + N    H  L +    + E++  K++D           +   A
Sbjct: 113 LLYMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 170
Query: 529 MAE--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSG 585
            A+  +                 +V+ FGVLL+E+ T G  PY                G
Sbjct: 171 GAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PG 215
Query: 586 VQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 629
           +  L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 216 ID-LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 262

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 112/290 (38%), Gaps = 49/290 (16%)
Query: 358 GVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ 417
           G  +LKR E+    E  S   G   +G  +KG     V++                 E +
Sbjct: 1   GHMELKREEITLLKELGSGQFGVVKLGK-WKGQYDVAVKMIKEGSMS----------EDE 49
Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH-----IKESEHL 472
           F ++  T+ K++H   V   G C +E P    +V EY  NG L  ++      ++ S+ L
Sbjct: 50  FFQEAQTMMKLSHPKLVKFYGVCSKEYPI--YIVTEYISNGCLLNYLRSHGKGLEPSQLL 107
Query: 473 DWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM 532
           +  M   +  GMA+   H         H  L +    +  D   K+SD      +   + 
Sbjct: 108 E--MCYDVCEGMAFLESHQ------FIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQY 159
Query: 533 XXXXXXXX----------XXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAAD 581
                                      +V+ FG+L++E+ + G++PY +   S      +
Sbjct: 160 VSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNS------E 213
Query: 582 YLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA 631
            +  V    +   P L+S      +T+ +++ SC    PEKRPT + + +
Sbjct: 214 VVLKVSQGHRLYRPHLAS------DTIYQIMYSCWHELPEKRPTFQQLLS 257

>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2 Length = 289

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 72/190 (37%), Gaps = 30/190 (15%)
Query: 363 KRSELEAACEDFSNVIGSSPIGTVYKGTLSNGV--EIXXXXXXXXXXKDWPKNLEVQFRK 420
           K  E+  +   F   +G    G VYKG L      E                 L  +FR 
Sbjct: 2   KLKEISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRH 61
Query: 421 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWG----- 475
           +    +++ H N V L+G   +++P +  M+F Y  +G L E + +  S H D G     
Sbjct: 62  EAMLRARLQHPNVVCLLGVVTKDQPLS--MIFSYCSHGDLHEFL-VMRSPHSDVGSTDDD 118
Query: 476 --------------MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDL 521
                         +  +IA GM Y   H       + H  L +  V + +    K+SDL
Sbjct: 119 RTVKSALEPPDFVHLVAQIAAGMEYLSSHH------VVHKDLATRNVLVYDKLNVKISDL 172
Query: 522 SFWNEIAMAE 531
             + E+  A+
Sbjct: 173 GLFREVYAAD 182

>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain Length = 308

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 72/190 (37%), Gaps = 30/190 (15%)
Query: 363 KRSELEAACEDFSNVIGSSPIGTVYKGTLSNGV--EIXXXXXXXXXXKDWPKNLEVQFRK 420
           K  E+  +   F   +G    G VYKG L      E                 L  +FR 
Sbjct: 19  KLKEISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRH 78
Query: 421 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWG----- 475
           +    +++ H N V L+G   +++P +  M+F Y  +G L E + +  S H D G     
Sbjct: 79  EAMLRARLQHPNVVCLLGVVTKDQPLS--MIFSYCSHGDLHEFL-VMRSPHSDVGSTDDD 135
Query: 476 --------------MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDL 521
                         +  +IA GM Y   H       + H  L +  V + +    K+SDL
Sbjct: 136 RTVKSALEPPDFVHLVAQIAAGMEYLSSHH------VVHKDLATRNVLVYDKLNVKISDL 189
Query: 522 SFWNEIAMAE 531
             + E+  A+
Sbjct: 190 GLFREVYAAD 199

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 119/294 (40%), Gaps = 43/294 (14%)
Query: 353 KAFVTGV-PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWP 411
           K  V GV P   + E+E       + +G    G VY+G      +           +D  
Sbjct: 241 KPTVYGVSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED-- 295
Query: 412 KNLEVQ-FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESE 470
             +EV+ F K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     +
Sbjct: 296 -TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQ 352
Query: 471 HLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF------- 523
            ++  + L +A  ++  +E++ + N    H  L +    + E++  K++D          
Sbjct: 353 EVNAVVLLYMATQISSAMEYLEKKN--FIHRNLAARNCLVGENHLVKVADFGLSRLMTGD 410
Query: 524 -WNEIAMAE--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWA 579
            +   A A+  +                 +V+ FGVLL+E+ T G  PY           
Sbjct: 411 TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY----------- 459
Query: 580 ADYLSGVQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 629
                G+  L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 460 ----PGID-LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 508

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 115/282 (40%), Gaps = 34/282 (12%)
Query: 362 LKRSELEAACEDFSNVIGSSPIGTVYKGT-LSNGVEIXXXXXXXXXXKDWPKNLEVQFRK 420
           LK +EL+        V+GS   GTVYKG  +  G  +          +       V+F  
Sbjct: 35  LKETELKRV-----KVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMD 89
Query: 421 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH-----IKESEHLDWG 475
           +   ++ ++H + V L+G C      T  +V +  P+G L E++H     I     L+W 
Sbjct: 90  EALIMASMDHPHLVRLLGVCLSP---TIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWC 146
Query: 476 MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH--LTEDYAAKL--SDLSFWN-EIAMA 530
             ++IA GM Y  E         A N L  S  H  +T+   A+L   D   +N +    
Sbjct: 147 --VQIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKM 204
Query: 531 EMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPL 589
            +                 +V+++GV ++E++T G  PY   +G       D L   + L
Sbjct: 205 PIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPY---DGIPTREIPDLLEKGERL 261
Query: 590 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA 631
            Q   P + + D      +  ++  C   D + RP  +++AA
Sbjct: 262 PQ---PPICTID------VYMVMVKCWMIDADSRPKFKELAA 294

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/284 (20%), Positives = 113/284 (39%), Gaps = 42/284 (14%)
Query: 362 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-FRK 420
           L + E+E       + +G    G VY+G      +           +D    +EV+ F K
Sbjct: 3   LDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVEEFLK 56
Query: 421 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRI 480
           +   + ++ H N V L+G C  E PF   ++ E+   G L +++     + +   + L +
Sbjct: 57  EAAVMKEIKHPNLVQLLGVCTREPPF--YIIIEFMTYGNLLDYLRECNRQEVSAVVLLYM 114
Query: 481 AMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI----------AMA 530
           A  ++  +E++ + N    H  L +    + E++  K++D      +          A  
Sbjct: 115 ATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKF 172
Query: 531 EMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPL 589
            +                 +V+ FGVLL+E+ T G  PY                G+ P 
Sbjct: 173 PIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGIDPS 217
Query: 590 QQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 629
           Q + +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 218 QVY-ELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 260

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 115/288 (39%), Gaps = 42/288 (14%)
Query: 358 GVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ 417
           G P   + E+E       + +G    G VY+G      +           +D    +EV+
Sbjct: 1   GSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVE 54
Query: 418 -FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGM 476
            F K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + +   +
Sbjct: 55  EFLKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVSAVV 112
Query: 477 RLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------WNEIA 528
            L +A  ++  +E++ + N    H  L +    + E++  K++D           +   A
Sbjct: 113 LLYMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 170
Query: 529 MAE--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSG 585
            A+  +                 +V+ FGVLL+E+ T G  PY                G
Sbjct: 171 GAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PG 215
Query: 586 VQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 629
           +  L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 216 ID-LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 262

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 115/288 (39%), Gaps = 42/288 (14%)
Query: 358 GVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ 417
           G P   + E+E       + +G    G VY+G      +           +D    +EV+
Sbjct: 1   GSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVE 54
Query: 418 -FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGM 476
            F K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + +   +
Sbjct: 55  EFLKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVSAVV 112
Query: 477 RLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------WNEIA 528
            L +A  ++  +E++ + N    H  L +    + E++  K++D           +   A
Sbjct: 113 LLYMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 170
Query: 529 MAE--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSG 585
            A+  +                 +V+ FGVLL+E+ T G  PY                G
Sbjct: 171 GAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PG 215
Query: 586 VQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 629
           +  L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 216 ID-LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 262

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 113/286 (39%), Gaps = 42/286 (14%)
Query: 360 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-F 418
           P   + E+E       + +G    G VY+G      +           +D    +EV+ F
Sbjct: 4   PNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVEEF 57
Query: 419 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL 478
            K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + ++  + L
Sbjct: 58  LKEAAVMKEIKHPNLVQLLGVCTREPPF--YIIIEFMTYGNLLDYLRECNRQEVNAVVLL 115
Query: 479 RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI----------A 528
            +A  ++  +E++ + N    H  L +    + E++  K++D      +          A
Sbjct: 116 YMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGA 173
Query: 529 MAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 587
              +                 +V+ FGVLL+E+ T G  PY                G+ 
Sbjct: 174 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGID 218
Query: 588 PLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 629
            L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 219 -LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 263

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 113/286 (39%), Gaps = 42/286 (14%)
Query: 360 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-F 418
           P   + E+E       + +G    G VY+G      +           +D    +EV+ F
Sbjct: 8   PNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVEEF 61
Query: 419 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL 478
            K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + ++  + L
Sbjct: 62  LKEAAVMKEIKHPNLVQLLGVCTREPPF--YIIIEFMTYGNLLDYLRECNRQEVNAVVLL 119
Query: 479 RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI----------A 528
            +A  ++  +E++ + N    H  L +    + E++  K++D      +          A
Sbjct: 120 YMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 177
Query: 529 MAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 587
              +                 +V+ FGVLL+E+ T G  PY                G+ 
Sbjct: 178 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGID 222
Query: 588 PLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 629
            L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 223 -LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 267

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 115/282 (40%), Gaps = 34/282 (12%)
Query: 362 LKRSELEAACEDFSNVIGSSPIGTVYKGT-LSNGVEIXXXXXXXXXXKDWPKNLEVQFRK 420
           LK +EL+        V+GS   GTVYKG  +  G  +          +       V+F  
Sbjct: 12  LKETELKRV-----KVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMD 66
Query: 421 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH-----IKESEHLDWG 475
           +   ++ ++H + V L+G C      T  +V +  P+G L E++H     I     L+W 
Sbjct: 67  EALIMASMDHPHLVRLLGVCLSP---TIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWC 123
Query: 476 MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH--LTEDYAAKL--SDLSFWN-EIAMA 530
             ++IA GM Y  E         A N L  S  H  +T+   A+L   D   +N +    
Sbjct: 124 --VQIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKM 181
Query: 531 EMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPL 589
            +                 +V+++GV ++E++T G  PY   +G       D L   + L
Sbjct: 182 PIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPY---DGIPTREIPDLLEKGERL 238
Query: 590 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA 631
            Q   P + + D      +  ++  C   D + RP  +++AA
Sbjct: 239 PQ---PPICTID------VYMVMVKCWMIDADSRPKFKELAA 271

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/294 (21%), Positives = 118/294 (40%), Gaps = 43/294 (14%)
Query: 353 KAFVTGV-PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWP 411
           K  + GV P   + E+E       + +G    G VY+G      +           +D  
Sbjct: 202 KPTIYGVSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED-- 256
Query: 412 KNLEVQ-FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESE 470
             +EV+ F K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     +
Sbjct: 257 -TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQ 313
Query: 471 HLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF------- 523
            +   + L +A  ++  +E++ + N    H  L +    + E++  K++D          
Sbjct: 314 EVSAVVLLYMATQISSAMEYLEKKN--FIHRNLAARNCLVGENHLVKVADFGLSRLMTGD 371
Query: 524 -WNEIAMAE--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWA 579
            +   A A+  +                 +V+ FGVLL+E+ T G  PY           
Sbjct: 372 TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY----------- 420
Query: 580 ADYLSGVQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 629
                G+  L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 421 ----PGID-LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 469

>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor 1 Length = 317

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 90/246 (36%), Gaps = 58/246 (23%)
Query: 429 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR----------- 477
            HKN +NL+G C ++ P    ++ EYA  G L E++  +E   L++              
Sbjct: 92  KHKNIINLLGACTQDGPL--YVIVEYASKGNLREYLQAREPPGLEYSYNPSHNPEEQLSS 149
Query: 478 -------LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA 530
                   ++A GM Y        +    H  L +  V +TED   K++D     +I   
Sbjct: 150 KDLVSCAYQVARGMEYL------ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHI 203
Query: 531 EMXXXXX-----------XXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDW 578
           +                             +V++FGVLL+E+ T G  PY          
Sbjct: 204 DYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPY---------- 253
Query: 579 AADYLSGVQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDIAAILR 634
                 GV P+++           ++       L  +++ C  A P +RPT + +   L 
Sbjct: 254 -----PGV-PVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLD 307
Query: 635 EITGIT 640
            I  +T
Sbjct: 308 RIVALT 313

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 112/288 (38%), Gaps = 43/288 (14%)
Query: 374 FSNVIGSSPIGTVYKGTLS-NGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKV-NHK 431
           F +VIG    G V K  +  +G+ +              K+    F  +++ L K+ +H 
Sbjct: 26  FQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYAS--KDDHRDFAGELEVLCKLGHHP 83
Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM 491
           N +NL+G CE        +  EYAP+G L +   +++S  L+      IA   A  L   
Sbjct: 84  NIINLLGACEHRGYL--YLAIEYAPHGNLLD--FLRKSRVLETDPAFAIANSTASTLSSQ 139
Query: 492 HQLN--------------PPIAHNYLNSSAVHLTEDYAAKLSD--LSFWNEI----AMAE 531
             L+                  H  L +  + + E+Y AK++D  LS   E+     M  
Sbjct: 140 QLLHFAADVARGMDYLSQKQFIHRNLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGR 199
Query: 532 MXXXXXXXXXXXXXXXXXN--VYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQP 588
           +                 N  V+++GVLL+E+V+ G  PY              L    P
Sbjct: 200 LPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYC-------GMTCAELYEKLP 252
Query: 589 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
               ++  L+  DE     + +L++ C R  P +RP+   I   L  +
Sbjct: 253 QGYRLEKPLNCDDE-----VYDLMRQCWREKPYERPSFAQILVSLNRM 295

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/284 (20%), Positives = 112/284 (39%), Gaps = 42/284 (14%)
Query: 362 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-FRK 420
           L + E+E       + +G    G VY+G                  +D    +EV+ F K
Sbjct: 3   LDKWEMERTDITMKHKLGGGQFGEVYEGVWKK---YSLTVAVKTLKED---TMEVEEFLK 56
Query: 421 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRI 480
           +   + ++ H N V L+G C  E PF   ++ E+   G L +++     + +   + L +
Sbjct: 57  EAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVSAVVLLYM 114
Query: 481 AMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI----------AMA 530
           A  ++  +E++ + N    H  L +    + E++  K++D      +          A  
Sbjct: 115 ATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKF 172
Query: 531 EMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPL 589
            +                 +V+ FGVLL+E+ T G  PY                G+ P 
Sbjct: 173 PIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGIDPS 217
Query: 590 QQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 629
           Q + +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 218 QVY-ELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 260

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 113/286 (39%), Gaps = 42/286 (14%)
Query: 360 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-F 418
           P   + E+E       + +G    G VY+G      +           +D    +EV+ F
Sbjct: 3   PNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVEEF 56
Query: 419 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL 478
            K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + ++  + L
Sbjct: 57  LKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVNAVVLL 114
Query: 479 RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI----------A 528
            +A  ++  +E++ + N    H  L +    + E++  K++D      +          A
Sbjct: 115 YMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 172
Query: 529 MAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 587
              +                 +V+ FGVLL+E+ T G  PY                G+ 
Sbjct: 173 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGID 217
Query: 588 PLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 629
            L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 218 -LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 262

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 113/286 (39%), Gaps = 42/286 (14%)
Query: 360 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-F 418
           P   + E+E       + +G    G VY+G      +           +D    +EV+ F
Sbjct: 8   PNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVEEF 61
Query: 419 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL 478
            K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + ++  + L
Sbjct: 62  LKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVNAVVLL 119
Query: 479 RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI----------A 528
            +A  ++  +E++ + N    H  L +    + E++  K++D      +          A
Sbjct: 120 YMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGA 177
Query: 529 MAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 587
              +                 +V+ FGVLL+E+ T G  PY                G+ 
Sbjct: 178 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGID 222
Query: 588 PLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 629
            L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 223 -LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 267

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 112/288 (38%), Gaps = 43/288 (14%)
Query: 374 FSNVIGSSPIGTVYKGTLS-NGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKV-NHK 431
           F +VIG    G V K  +  +G+ +              K+    F  +++ L K+ +H 
Sbjct: 29  FQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYAS--KDDHRDFAGELEVLCKLGHHP 86
Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--------------SEHLDWGMR 477
           N +NL+G CE        +  EYAP+G L + +                  +  L     
Sbjct: 87  NIINLLGACEHRGYL--YLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL 144
Query: 478 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD--LSFWNEI----AMAE 531
           L  A  +A  ++++ Q      H  L +  + + E+Y AK++D  LS   E+     M  
Sbjct: 145 LHFAADVARGMDYLSQ--KQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGR 202
Query: 532 MXXXXXXXXXXXXXXXXXN--VYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQP 588
           +                 N  V+++GVLL+E+V+ G  PY              L    P
Sbjct: 203 LPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYC-------GMTCAELYEKLP 255
Query: 589 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
               ++  L+  DE     + +L++ C R  P +RP+   I   L  +
Sbjct: 256 QGYRLEKPLNCDDE-----VYDLMRQCWREKPYERPSFAQILVSLNRM 298

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 115/286 (40%), Gaps = 42/286 (14%)
Query: 360 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-F 418
           P   + E+E       + +G    G VY+G      +           +D    +EV+ F
Sbjct: 7   PNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVEEF 60
Query: 419 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL 478
            K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + ++  + L
Sbjct: 61  LKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVNAVVLL 118
Query: 479 RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------WNEIAMA 530
            +A  ++  +E++ + N    H  L +    + E++  K++D           +   A A
Sbjct: 119 YMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 176
Query: 531 E--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 587
           +  +                 +V+ FGVLL+E+ T G  PY                G+ 
Sbjct: 177 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGID 221
Query: 588 PLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 629
            L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 222 -LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 266

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 115/286 (40%), Gaps = 42/286 (14%)
Query: 360 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-F 418
           P   + E+E       + +G    G VY+G      +           +D    +EV+ F
Sbjct: 4   PNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVEEF 57
Query: 419 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL 478
            K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + ++  + L
Sbjct: 58  LKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVNAVVLL 115
Query: 479 RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------WNEIAMA 530
            +A  ++  +E++ + N    H  L +    + E++  K++D           +   A A
Sbjct: 116 YMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAPAGA 173
Query: 531 E--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 587
           +  +                 +V+ FGVLL+E+ T G  PY                G+ 
Sbjct: 174 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGID 218
Query: 588 PLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 629
            L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 219 -LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 263

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 111/288 (38%), Gaps = 43/288 (14%)
Query: 374 FSNVIGSSPIGTVYKGTLS-NGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKV-NHK 431
           F +VIG    G V K  +  +G+ +              K+    F  +++ L K+ +H 
Sbjct: 19  FQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYAS--KDDHRDFAGELEVLCKLGHHP 76
Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR-------------- 477
           N +NL+G CE        +  EYAP+G L + +        D                  
Sbjct: 77  NIINLLGACEHRGYL--YLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL 134
Query: 478 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD--LSFWNEI----AMAE 531
           L  A  +A  ++++ Q      H  L +  + + E+Y AK++D  LS   E+     M  
Sbjct: 135 LHFAADVARGMDYLSQ--KQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGR 192
Query: 532 MXXXXXXXXXXXXXXXXXN--VYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQP 588
           +                 N  V+++GVLL+E+V+ G  PY              L    P
Sbjct: 193 LPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYC-------GMTCAELYEKLP 245
Query: 589 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
               ++  L+  DE     + +L++ C R  P +RP+   I   L  +
Sbjct: 246 QGYRLEKPLNCDDE-----VYDLMRQCWREKPYERPSFAQILVSLNRM 288

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 115/286 (40%), Gaps = 42/286 (14%)
Query: 360 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-F 418
           P   + E+E       + +G    G VY+G      +           +D    +EV+ F
Sbjct: 8   PNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVEEF 61
Query: 419 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL 478
            K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + ++  + L
Sbjct: 62  LKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVNAVVLL 119
Query: 479 RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------WNEIAMA 530
            +A  ++  +E++ + N    H  L +    + E++  K++D           +   A A
Sbjct: 120 YMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 177
Query: 531 E--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 587
           +  +                 +V+ FGVLL+E+ T G  PY                G+ 
Sbjct: 178 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGID 222
Query: 588 PLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 629
            L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 223 -LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 267

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 113/286 (39%), Gaps = 42/286 (14%)
Query: 360 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-F 418
           P   + E+E       + +G    G VY+G      +           +D    +EV+ F
Sbjct: 8   PNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVEEF 61
Query: 419 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL 478
            K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + ++  + L
Sbjct: 62  LKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVNAVVLL 119
Query: 479 RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI----------A 528
            +A  ++  +E++ + N    H  L +    + E++  K++D      +          A
Sbjct: 120 YMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 177
Query: 529 MAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 587
              +                 +V+ FGVLL+E+ T G  PY                G+ 
Sbjct: 178 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGID 222
Query: 588 PLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 629
            L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 223 -LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 267

>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment Length = 336

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 93/228 (40%), Gaps = 33/228 (14%)
Query: 413 NLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHL 472
           ++ ++  ++I  L  + H + + L        P   +MV EYA  G LF++I  K+    
Sbjct: 51  DMHMRVEREISYLKLLRHPHIIKLYDVITT--PTDIVMVIEYA-GGELFDYIVEKKRMTE 107
Query: 473 DWGMRL--RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA 530
           D G R   +I   + YC  H H+    I H  L    + L ++   K++D    N +   
Sbjct: 108 DEGRRFFQQIICAIEYC--HRHK----IVHRDLKPENLLLDDNLNVKIADFGLSNIMTDG 161
Query: 531 EMXXXX---------XXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAAD 581
                                       +V++ G++L+ M+ GRLP+  D+  + +    
Sbjct: 162 NFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPF--DDEFIPNLFKK 219
Query: 582 YLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
             S V  +  F+ P   S           LI+  + ADP +R T+++I
Sbjct: 220 VNSCVYVMPDFLSPGAQS-----------LIRRMIVADPMQRITIQEI 256

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 113/286 (39%), Gaps = 42/286 (14%)
Query: 360 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-F 418
           P   + E+E       + +G    G VY+G      +           +D    +EV+ F
Sbjct: 3   PNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVEEF 56
Query: 419 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL 478
            K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + ++  + L
Sbjct: 57  LKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVNAVVLL 114
Query: 479 RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI----------A 528
            +A  ++  +E++ + N    H  L +    + E++  K++D      +          A
Sbjct: 115 YMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 172
Query: 529 MAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 587
              +                 +V+ FGVLL+E+ T G  PY                G+ 
Sbjct: 173 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGID 217
Query: 588 PLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 629
            L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 218 -LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 262

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 115/286 (40%), Gaps = 42/286 (14%)
Query: 360 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-F 418
           P   + E+E       + +G    G VY+G      +           +D    +EV+ F
Sbjct: 5   PNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVEEF 58
Query: 419 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL 478
            K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + ++  + L
Sbjct: 59  LKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVNAVVLL 116
Query: 479 RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------WNEIAMA 530
            +A  ++  +E++ + N    H  L +    + E++  K++D           +   A A
Sbjct: 117 YMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAPAGA 174
Query: 531 E--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 587
           +  +                 +V+ FGVLL+E+ T G  PY                G+ 
Sbjct: 175 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGID 219
Query: 588 PLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 629
            L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 220 -LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 264

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/284 (20%), Positives = 112/284 (39%), Gaps = 42/284 (14%)
Query: 362 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-FRK 420
           L + E+E       + +G    G VY+G                  +D    +EV+ F K
Sbjct: 3   LDKWEMERTDITMKHKLGGGQYGEVYEGVWKK---YSLTVAVKTLKED---TMEVEEFLK 56
Query: 421 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRI 480
           +   + ++ H N V L+G C  E PF   ++ E+   G L +++     + +   + L +
Sbjct: 57  EAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVSAVVLLYM 114
Query: 481 AMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI----------AMA 530
           A  ++  +E++ + N    H  L +    + E++  K++D      +          A  
Sbjct: 115 ATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTFTAHAGAKF 172
Query: 531 EMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPL 589
            +                 +V+ FGVLL+E+ T G  PY                G+ P 
Sbjct: 173 PIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGIDPS 217
Query: 590 QQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 629
           Q + +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 218 QVY-ELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 260

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 115/286 (40%), Gaps = 42/286 (14%)
Query: 360 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-F 418
           P   + E+E       + +G    G VY+G      +           +D    +EV+ F
Sbjct: 5   PNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVEEF 58
Query: 419 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL 478
            K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + ++  + L
Sbjct: 59  LKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVNAVVLL 116
Query: 479 RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------WNEIAMA 530
            +A  ++  +E++ + N    H  L +    + E++  K++D           +   A A
Sbjct: 117 YMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 174
Query: 531 E--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 587
           +  +                 +V+ FGVLL+E+ T G  PY                G+ 
Sbjct: 175 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGID 219
Query: 588 PLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 629
            L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 220 -LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 264

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 114/286 (39%), Gaps = 42/286 (14%)
Query: 360 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-F 418
           P   + E+E       + +G    G VY+G      +           +D    +EV+ F
Sbjct: 8   PNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVEEF 61
Query: 419 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL 478
            K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + +   + L
Sbjct: 62  LKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVSAVVLL 119
Query: 479 RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------WNEIAMA 530
            +A  ++  +E++ + N    H  L +    + E++  K++D           +   A A
Sbjct: 120 YMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 177
Query: 531 E--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 587
           +  +                 +V+ FGVLL+E+ T G  PY                G+ 
Sbjct: 178 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGID 222
Query: 588 PLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 629
            L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 223 -LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 267

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 115/286 (40%), Gaps = 42/286 (14%)
Query: 360 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ-F 418
           P   + E+E       + +G    G VY+G      +           +D    +EV+ F
Sbjct: 5   PNYDKWEMERTDITMKHKLGGGQYGEVYEGVWK---KYSLTVAVKTLKED---TMEVEEF 58
Query: 419 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRL 478
            K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + ++  + L
Sbjct: 59  LKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVNAVVLL 116
Query: 479 RIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------WNEIAMA 530
            +A  ++  +E++ + N    H  L +    + E++  K++D           +   A A
Sbjct: 117 YMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 174
Query: 531 E--MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 587
           +  +                 +V+ FGVLL+E+ T G  PY                G+ 
Sbjct: 175 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY---------------PGID 219
Query: 588 PLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDI 629
            L Q  +     +  E+     E + EL+++C + +P  RP+  +I
Sbjct: 220 -LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 264

>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase In Complex With Arq 069 Length = 306

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/246 (21%), Positives = 89/246 (36%), Gaps = 58/246 (23%)
Query: 429 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR----------- 477
            HKN +NL+G C ++ P    ++ EYA  G L E++  +    L++              
Sbjct: 81  KHKNIINLLGACTQDGPL--YVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSS 138
Query: 478 -------LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA 530
                   ++A GM Y        +    H  L +  V +TED   K++D     +I   
Sbjct: 139 KDLVSCAYQVARGMEYL------ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHI 192
Query: 531 EMXXXXX-----------XXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDW 578
           +                             +V++FGVLL+E+ T G  PY          
Sbjct: 193 DYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPY---------- 242
Query: 579 AADYLSGVQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDIAAILR 634
                 GV P+++           ++       L  +++ C  A P +RPT + +   L 
Sbjct: 243 -----PGV-PVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLD 296
Query: 635 EITGIT 640
            I  +T
Sbjct: 297 RIVALT 302

>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein Kina Length = 313

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/290 (20%), Positives = 109/290 (37%), Gaps = 36/290 (12%)
Query: 374 FSNVIGSSPIGTVYKGTLS--NGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHK 431
              ++G    G+V +G L   +G  +              + +E +F  +   +   +H 
Sbjct: 38  LGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIE-EFLSEAACMKDFSHP 96
Query: 432 NFVNLIGFCEE------EEPFTRMMVFEYAPNGTLFEHIHIKES-EHLDWGMRLRIAMGM 484
           N + L+G C E       +P   +   +Y    T   +  ++   +H+     L+  + +
Sbjct: 97  NVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDI 156
Query: 485 AYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLS---------FWNEIAMAEMXXX 535
           A  +E++   N    H  L +    L +D    ++D           ++ +  +A+M   
Sbjct: 157 ALGMEYLSNRN--FLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVK 214
Query: 536 --XXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQF 592
                           +V+ FGV ++E+ T G  PY    G       DYL     L+Q 
Sbjct: 215 WIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPY---PGVQNHEMYDYLLHGHRLKQ- 270
Query: 593 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPD 642
                    E+ L+ L E++ SC R DP  RPT   +   L ++    PD
Sbjct: 271 --------PEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESLPD 312

>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp Length = 298

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 107/286 (37%), Gaps = 50/286 (17%)
Query: 376 NVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQ----FRKKIDTLSKVNHK 431
            VIG    G VY G   +  +           K   +  E+Q    F ++   +  +NH 
Sbjct: 27  RVIGKGHFGVVYHGEYIDQAQ----NRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHP 82
Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE-----SEHLDWGMRLRIAMGMAY 486
           N + LIG     E    +++  Y  +G L + I   +      + + +G  L++A GM Y
Sbjct: 83  NVLALIGIMLPPEGLPHVLL-PYMCHGDLLQFIRSPQRNPTVKDLISFG--LQVARGMEY 139
Query: 487 CLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-------------AMAEMX 533
             E          H  L +    L E +  K++D     +I             A   + 
Sbjct: 140 LAEQK------FVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVK 193
Query: 534 XXXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYL-VDNGSLEDWAADYLSGVQPLQQ 591
                           +V++FGVLL+E++T G  PY  +D   L  + A      QP   
Sbjct: 194 WTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHFLAQGRRLPQP--- 250
Query: 592 FVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT 637
                     E   ++L ++++ C  ADP  RPT R +   + +I 
Sbjct: 251 ----------EYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIV 286

>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fibroblast Growth Factor Receptor 1 Length = 310

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/246 (21%), Positives = 89/246 (36%), Gaps = 58/246 (23%)
Query: 429 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR----------- 477
            HKN +NL+G C ++ P    ++ EYA  G L E++  +    L++              
Sbjct: 85  KHKNIINLLGACTQDGPL--YVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSS 142
Query: 478 -------LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA 530
                   ++A GM Y        +    H  L +  V +TED   K++D     +I   
Sbjct: 143 KDLVSCAYQVARGMEYL------ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHI 196
Query: 531 EMXXXXX-----------XXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDW 578
           +                             +V++FGVLL+E+ T G  PY          
Sbjct: 197 DYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPY---------- 246
Query: 579 AADYLSGVQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDIAAILR 634
                 GV P+++           ++       L  +++ C  A P +RPT + +   L 
Sbjct: 247 -----PGV-PVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLD 300
Query: 635 EITGIT 640
            I  +T
Sbjct: 301 RIVALT 306

>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor Receptor 1 Kinase Domain In Complex With Compound 1 Length = 309

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/246 (21%), Positives = 89/246 (36%), Gaps = 58/246 (23%)
Query: 429 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR----------- 477
            HKN +NL+G C ++ P    ++ EYA  G L E++  +    L++              
Sbjct: 84  KHKNIINLLGACTQDGPL--YVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSS 141
Query: 478 -------LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA 530
                   ++A GM Y        +    H  L +  V +TED   K++D     +I   
Sbjct: 142 KDLVSCAYQVARGMEYL------ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHI 195
Query: 531 EMXXXXX-----------XXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDW 578
           +                             +V++FGVLL+E+ T G  PY          
Sbjct: 196 DYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPY---------- 245
Query: 579 AADYLSGVQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDIAAILR 634
                 GV P+++           ++       L  +++ C  A P +RPT + +   L 
Sbjct: 246 -----PGV-PVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLD 299
Query: 635 EITGIT 640
            I  +T
Sbjct: 300 RIVALT 305

>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 106/282 (37%), Gaps = 40/282 (14%)
Query: 374 FSNVIGSSPIGTVYKGTL--SNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHK 431
           F+ VIG    G VY GTL  ++G +I           D  +    QF  +   +   +H 
Sbjct: 33  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGE--VSQFLTEGIIMKDFSHP 90
Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESEHLDWGMRLRIAMGMAYC 487
           N ++L+G C   E  + ++V  Y  +G L   I    H    + L  G  L++A GM Y 
Sbjct: 91  NVLSLLGICLRSEG-SPLVVLPYMKHGDLRNFIRNETHNPTVKDL-IGFGLQVAKGMKYL 148
Query: 488 LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-------------AMAEMXX 534
                  +    H  L +    L E +  K++D     ++             A   +  
Sbjct: 149 ------ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEXXSVHNKTGAKLPVKW 202
Query: 535 XXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 594
                          +V++FGVLL+E++T   P   D  +  D     L G + LQ    
Sbjct: 203 MALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF-DITVYLLQGRRLLQPEYC 261
Query: 595 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
           P          + L E++  C     E RP+  ++ + +  I
Sbjct: 262 P----------DPLYEVMLKCWHPKAEMRPSFSELVSRISAI 293

>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2 Chain) Length = 276

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/224 (20%), Positives = 88/224 (39%), Gaps = 32/224 (14%)
Query: 417 QFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHLDW 474
           + +++I  L    H + + L         F   MV EY   G LF++I  H +  E    
Sbjct: 57  KIKREIQNLKLFRHPHIIKLYQVISTPTDF--FMVMEYVSGGELFDYICKHGRVEEMEAR 114
Query: 475 GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMXX 534
            +  +I   + YC  HM      + H  L    V L     AK++D    N ++  E   
Sbjct: 115 RLFQQILSAVDYCHRHM------VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLR 168
Query: 535 XX---------XXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG 585
                                   ++++ GV+L+ ++ G LP+  D+  +         G
Sbjct: 169 TSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPF--DDEHVPTLFKKIRGG 226
Query: 586 VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
           V  + ++++ ++++           L+   ++ DP KR T++DI
Sbjct: 227 VFYIPEYLNRSVAT-----------LLMHMLQVDPLKRATIKDI 259

>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast Growth Factor Receptor 1 In Complex With 5-(2-Thienyl) Nicotinic Acid Length = 317

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/246 (21%), Positives = 89/246 (36%), Gaps = 58/246 (23%)
Query: 429 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR----------- 477
            HKN +NL+G C ++ P    ++ EYA  G L E++  +    L++              
Sbjct: 92  KHKNIINLLGACTQDGPL--YVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSS 149
Query: 478 -------LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA 530
                   ++A GM Y        +    H  L +  V +TED   K++D     +I   
Sbjct: 150 KDLVSCAYQVARGMEYL------ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHI 203
Query: 531 EMXXXXX-----------XXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDW 578
           +                             +V++FGVLL+E+ T G  PY          
Sbjct: 204 DYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPY---------- 253
Query: 579 AADYLSGVQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDIAAILR 634
                 GV P+++           ++       L  +++ C  A P +RPT + +   L 
Sbjct: 254 -----PGV-PVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLD 307
Query: 635 EITGIT 640
            I  +T
Sbjct: 308 RIVALT 313

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 106/282 (37%), Gaps = 40/282 (14%)
Query: 374 FSNVIGSSPIGTVYKGTL--SNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHK 431
           F+ VIG    G VY GTL  ++G +I           D  +    QF  +   +   +H 
Sbjct: 26  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGE--VSQFLTEGIIMKDFSHP 83
Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESEHLDWGMRLRIAMGMAYC 487
           N ++L+G C   E  + ++V  Y  +G L   I    H    + L  G  L++A GM Y 
Sbjct: 84  NVLSLLGICLRSEG-SPLVVLPYMKHGDLRNFIRNETHNPTVKDL-IGFGLQVAKGMKYL 141
Query: 488 LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-------------AMAEMXX 534
                  +    H  L +    L E +  K++D     ++             A   +  
Sbjct: 142 ------ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKW 195
Query: 535 XXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 594
                          +V++FGVLL+E++T   P   D  +  D     L G + LQ    
Sbjct: 196 MALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF-DITVYLLQGRRLLQPEYC 254
Query: 595 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
           P          + L E++  C     E RP+  ++ + +  I
Sbjct: 255 P----------DPLYEVMLKCWHPKAEMRPSFSELVSRISAI 286

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 106/282 (37%), Gaps = 40/282 (14%)
Query: 374 FSNVIGSSPIGTVYKGTL--SNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHK 431
           F+ VIG    G VY GTL  ++G +I           D  +    QF  +   +   +H 
Sbjct: 34  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGE--VSQFLTEGIIMKDFSHP 91
Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESEHLDWGMRLRIAMGMAYC 487
           N ++L+G C   E  + ++V  Y  +G L   I    H    + L  G  L++A GM Y 
Sbjct: 92  NVLSLLGICLRSEG-SPLVVLPYMKHGDLRNFIRNETHNPTVKDL-IGFGLQVAKGMKYL 149
Query: 488 LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-------------AMAEMXX 534
                  +    H  L +    L E +  K++D     ++             A   +  
Sbjct: 150 ------ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKW 203
Query: 535 XXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 594
                          +V++FGVLL+E++T   P   D  +  D     L G + LQ    
Sbjct: 204 MALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF-DITVYLLQGRRLLQPEYC 262
Query: 595 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
           P          + L E++  C     E RP+  ++ + +  I
Sbjct: 263 P----------DPLYEVMLKCWHPKAEMRPSFSELVSRISAI 294

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 106/282 (37%), Gaps = 40/282 (14%)
Query: 374 FSNVIGSSPIGTVYKGTL--SNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHK 431
           F+ VIG    G VY GTL  ++G +I           D  +    QF  +   +   +H 
Sbjct: 52  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGE--VSQFLTEGIIMKDFSHP 109
Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESEHLDWGMRLRIAMGMAYC 487
           N ++L+G C   E  + ++V  Y  +G L   I    H    + L  G  L++A GM Y 
Sbjct: 110 NVLSLLGICLRSEG-SPLVVLPYMKHGDLRNFIRNETHNPTVKDL-IGFGLQVAKGMKYL 167
Query: 488 LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-------------AMAEMXX 534
                  +    H  L +    L E +  K++D     ++             A   +  
Sbjct: 168 ------ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKW 221
Query: 535 XXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 594
                          +V++FGVLL+E++T   P   D  +  D     L G + LQ    
Sbjct: 222 MALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF-DITVYLLQGRRLLQPEYC 280
Query: 595 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
           P          + L E++  C     E RP+  ++ + +  I
Sbjct: 281 P----------DPLYEVMLKCWHPKAEMRPSFSELVSRISAI 312

>pdb|3FPQ|A Chain A, Crystal Structure Of The Kinase Domain Of Wnk1 Length = 290

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 105/275 (38%), Gaps = 43/275 (15%)
Query: 374 FSNVIGSSPIGTVYKG-TLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKN 432
           F   IG     TVYKG      VE+          +   K+   +F+++ + L  + H N
Sbjct: 30  FDIEIGRGSFKTVYKGLDTETTVEVAWCELQD---RKLTKSERQRFKEEAEXLKGLQHPN 86
Query: 433 FVNLIGFCEEEEPFTR--MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYC--- 487
            V      E      +  ++V E   +GTL          +L      +I +  ++C   
Sbjct: 87  IVRFYDSWESTVKGKKCIVLVTELXTSGTL--------KTYLKRFKVXKIKVLRSWCRQI 138
Query: 488 ---LEHMHQLNPPIAHNYLNSSAVHLTEDYAA-KLSDLSFWN------EIAMAEMXXXXX 537
              L+ +H   PPI H  L    + +T    + K+ DL            A+        
Sbjct: 139 LKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFXA 198
Query: 538 XXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY---LSGVQPLQQFVD 594
                       +VY FG    E  T   PY       ++ A  Y    SGV+P      
Sbjct: 199 PEXYEEKYDESVDVYAFGXCXLEXATSEYPY----SECQNAAQIYRRVTSGVKP------ 248
Query: 595 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
              +SFD+  +  + E+I+ C+R + ++R +++D+
Sbjct: 249 ---ASFDKVAIPEVKEIIEGCIRQNKDERYSIKDL 280

>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 90/246 (36%), Gaps = 58/246 (23%)
Query: 429 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR----------- 477
            HKN +NL+G C ++ P    ++ EYA  G L E++  +    L++              
Sbjct: 92  KHKNIINLLGACTQDGPL--YVIVEYASKGNLREYLQARRPPGLEFSFNPSHNPEEQLSS 149
Query: 478 -------LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA 530
                   ++A GM Y        +    H  L +  V +TED   K++D     +I   
Sbjct: 150 KDLVSCAYQVARGMEYL------ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHI 203
Query: 531 EMXXXXX-----------XXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDW 578
           +                             +V++FGVLL+E+ T G  PY          
Sbjct: 204 DXXKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPY---------- 253
Query: 579 AADYLSGVQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDIAAILR 634
                 GV P+++           ++       L  +++ C  A P +RPT + +   L 
Sbjct: 254 -----PGV-PVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLD 307
Query: 635 EITGIT 640
            I  +T
Sbjct: 308 RIVALT 313

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 100/240 (41%), Gaps = 40/240 (16%)
Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH----IKESEHLD 473
           F  + + + ++ H+  V L     +E  +   ++ EY  NG+L + +     IK + +  
Sbjct: 55  FLAEANLMKQLQHQRLVRLYAVVTQEPIY---IITEYMENGSLVDFLKTPSGIKLTINKL 111
Query: 474 WGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMX 533
             M  +IA GMA+  E  +       H  L ++ + +++  + K++D      I  AE  
Sbjct: 112 LDMAAQIAEGMAFIEERNY------IHRDLRAANILVSDTLSCKIADFGLARLIEDAEXT 165
Query: 534 X----------XXXXXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPY--LVDNGSLEDWAA 580
                                     +V++FG+LL E+VT GR+PY  + +   +++   
Sbjct: 166 AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLER 225
Query: 581 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT 640
            Y        + V P      +   E L +L++ C +  PE RPT   + ++L +    T
Sbjct: 226 GY--------RMVRP------DNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTAT 271

>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human 5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant (T172d) Length = 276

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/224 (20%), Positives = 88/224 (39%), Gaps = 32/224 (14%)
Query: 417 QFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHLDW 474
           + +++I  L    H + + L         F   MV EY   G LF++I  H +  E    
Sbjct: 57  KIKREIQNLKLFRHPHIIKLYQVISTPTDF--FMVMEYVSGGELFDYICKHGRVEEMEAR 114
Query: 475 GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM-- 532
            +  +I   + YC  HM      + H  L    V L     AK++D    N ++  E   
Sbjct: 115 RLFQQILSAVDYCHRHM------VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLR 168
Query: 533 -------XXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG 585
                                   ++++ GV+L+ ++ G LP+  D+  +         G
Sbjct: 169 DSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPF--DDEHVPTLFKKIRGG 226
Query: 586 VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
           V  + ++++ ++++           L+   ++ DP KR T++DI
Sbjct: 227 VFYIPEYLNRSVAT-----------LLMHMLQVDPLKRATIKDI 259

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 106/282 (37%), Gaps = 40/282 (14%)
Query: 374 FSNVIGSSPIGTVYKGTL--SNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHK 431
           F+ VIG    G VY GTL  ++G +I           D  +    QF  +   +   +H 
Sbjct: 53  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGE--VSQFLTEGIIMKDFSHP 110
Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESEHLDWGMRLRIAMGMAYC 487
           N ++L+G C   E  + ++V  Y  +G L   I    H    + L  G  L++A GM Y 
Sbjct: 111 NVLSLLGICLRSEG-SPLVVLPYMKHGDLRNFIRNETHNPTVKDL-IGFGLQVAKGMKYL 168
Query: 488 LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-------------AMAEMXX 534
                  +    H  L +    L E +  K++D     ++             A   +  
Sbjct: 169 ------ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKW 222
Query: 535 XXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 594
                          +V++FGVLL+E++T   P   D  +  D     L G + LQ    
Sbjct: 223 MALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF-DITVYLLQGRRLLQPEYC 281
Query: 595 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
           P          + L E++  C     E RP+  ++ + +  I
Sbjct: 282 P----------DPLYEVMLKCWHPKAEMRPSFSELVSRISAI 313

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 106/282 (37%), Gaps = 40/282 (14%)
Query: 374 FSNVIGSSPIGTVYKGTL--SNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHK 431
           F+ VIG    G VY GTL  ++G +I           D  +    QF  +   +   +H 
Sbjct: 32  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGE--VSQFLTEGIIMKDFSHP 89
Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESEHLDWGMRLRIAMGMAYC 487
           N ++L+G C   E  + ++V  Y  +G L   I    H    + L  G  L++A GM Y 
Sbjct: 90  NVLSLLGICLRSEG-SPLVVLPYMKHGDLRNFIRNETHNPTVKDL-IGFGLQVAKGMKYL 147
Query: 488 LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-------------AMAEMXX 534
                  +    H  L +    L E +  K++D     ++             A   +  
Sbjct: 148 ------ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKW 201
Query: 535 XXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 594
                          +V++FGVLL+E++T   P   D  +  D     L G + LQ    
Sbjct: 202 MALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF-DITVYLLQGRRLLQPEYC 260
Query: 595 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
           P          + L E++  C     E RP+  ++ + +  I
Sbjct: 261 P----------DPLYEVMLKCWHPKAEMRPSFSELVSRISAI 292

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 106/282 (37%), Gaps = 40/282 (14%)
Query: 374 FSNVIGSSPIGTVYKGTL--SNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHK 431
           F+ VIG    G VY GTL  ++G +I           D  +    QF  +   +   +H 
Sbjct: 31  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGE--VSQFLTEGIIMKDFSHP 88
Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESEHLDWGMRLRIAMGMAYC 487
           N ++L+G C   E  + ++V  Y  +G L   I    H    + L  G  L++A GM Y 
Sbjct: 89  NVLSLLGICLRSEG-SPLVVLPYMKHGDLRNFIRNETHNPTVKDL-IGFGLQVAKGMKYL 146
Query: 488 LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-------------AMAEMXX 534
                  +    H  L +    L E +  K++D     ++             A   +  
Sbjct: 147 ------ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKW 200
Query: 535 XXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 594
                          +V++FGVLL+E++T   P   D  +  D     L G + LQ    
Sbjct: 201 MALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF-DITVYLLQGRRLLQPEYC 259
Query: 595 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
           P          + L E++  C     E RP+  ++ + +  I
Sbjct: 260 P----------DPLYEVMLKCWHPKAEMRPSFSELVSRISAI 291

>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3- Methoxybenzyl)-7-Azaindole Length = 302

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/246 (21%), Positives = 89/246 (36%), Gaps = 58/246 (23%)
Query: 429 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW-------------- 474
            HKN +NL+G C ++ P    ++ EYA  G L E++  +    L++              
Sbjct: 77  KHKNIINLLGACTQDGPL--YVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSS 134
Query: 475 ----GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA 530
                   ++A GM Y        +    H  L +  V +TED   K++D     +I   
Sbjct: 135 KDLVSCAYQVARGMEYL------ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHI 188
Query: 531 EMXXXXX-----------XXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDW 578
           +                             +V++FGVLL+E+ T G  PY          
Sbjct: 189 DYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPY---------- 238
Query: 579 AADYLSGVQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDIAAILR 634
                 GV P+++           ++       L  +++ C  A P +RPT + +   L 
Sbjct: 239 -----PGV-PVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLD 292
Query: 635 EITGIT 640
            I  +T
Sbjct: 293 RIVALT 298

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 106/282 (37%), Gaps = 40/282 (14%)
Query: 374 FSNVIGSSPIGTVYKGTL--SNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHK 431
           F+ VIG    G VY GTL  ++G +I           D  +    QF  +   +   +H 
Sbjct: 29  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGE--VSQFLTEGIIMKDFSHP 86
Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESEHLDWGMRLRIAMGMAYC 487
           N ++L+G C   E  + ++V  Y  +G L   I    H    + L  G  L++A GM Y 
Sbjct: 87  NVLSLLGICLRSEG-SPLVVLPYMKHGDLRNFIRNETHNPTVKDL-IGFGLQVAKGMKYL 144
Query: 488 LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-------------AMAEMXX 534
                  +    H  L +    L E +  K++D     ++             A   +  
Sbjct: 145 ------ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKW 198
Query: 535 XXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 594
                          +V++FGVLL+E++T   P   D  +  D     L G + LQ    
Sbjct: 199 MALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF-DITVYLLQGRRLLQPEYC 257
Query: 595 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
           P          + L E++  C     E RP+  ++ + +  I
Sbjct: 258 P----------DPLYEVMLKCWHPKAEMRPSFSELVSRISAI 289

>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/246 (21%), Positives = 89/246 (36%), Gaps = 58/246 (23%)
Query: 429 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW-------------- 474
            HKN +NL+G C ++ P    ++ EYA  G L E++  +    L++              
Sbjct: 92  KHKNIINLLGACTQDGPL--YVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSS 149
Query: 475 ----GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA 530
                   ++A GM Y        +    H  L +  V +TED   K++D     +I   
Sbjct: 150 KDLVSCAYQVARGMEYL------ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHI 203
Query: 531 EMXXXXX-----------XXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDW 578
           +                             +V++FGVLL+E+ T G  PY          
Sbjct: 204 DYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPY---------- 253
Query: 579 AADYLSGVQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDIAAILR 634
                 GV P+++           ++       L  +++ C  A P +RPT + +   L 
Sbjct: 254 -----PGV-PVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLD 307
Query: 635 EITGIT 640
            I  +T
Sbjct: 308 RIVALT 313

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 106/282 (37%), Gaps = 40/282 (14%)
Query: 374 FSNVIGSSPIGTVYKGTL--SNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHK 431
           F+ VIG    G VY GTL  ++G +I           D  +    QF  +   +   +H 
Sbjct: 33  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGE--VSQFLTEGIIMKDFSHP 90
Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESEHLDWGMRLRIAMGMAYC 487
           N ++L+G C   E  + ++V  Y  +G L   I    H    + L  G  L++A GM Y 
Sbjct: 91  NVLSLLGICLRSEG-SPLVVLPYMKHGDLRNFIRNETHNPTVKDL-IGFGLQVAKGMKYL 148
Query: 488 LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-------------AMAEMXX 534
                  +    H  L +    L E +  K++D     ++             A   +  
Sbjct: 149 ------ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKW 202
Query: 535 XXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 594
                          +V++FGVLL+E++T   P   D  +  D     L G + LQ    
Sbjct: 203 MALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF-DITVYLLQGRRLLQPEYC 261
Query: 595 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
           P          + L E++  C     E RP+  ++ + +  I
Sbjct: 262 P----------DPLYEVMLKCWHPKAEMRPSFSELVSRISAI 293

>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase Domain With 3-(2,6-Dichloro-3, 5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1- Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398) Length = 382

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 89/245 (36%), Gaps = 58/245 (23%)
Query: 430 HKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR------------ 477
           HKN +NL+G C ++ P    ++ EYA  G L E++  +    L++               
Sbjct: 134 HKNIINLLGACTQDGPL--YVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSK 191
Query: 478 ------LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE 531
                  ++A GM Y        +    H  L +  V +TED   K++D     +I   +
Sbjct: 192 DLVSCAYQVARGMEYL------ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHID 245
Query: 532 MXXXXX-----------XXXXXXXXXXXXNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWA 579
                                        +V++FGVLL+E+ T G  PY           
Sbjct: 246 YYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPY----------- 294
Query: 580 ADYLSGVQPLQQFVDPTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDIAAILRE 635
                GV P+++           ++       L  +++ C  A P +RPT + +   L  
Sbjct: 295 ----PGV-PVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDR 349
Query: 636 ITGIT 640
           I  +T
Sbjct: 350 IVALT 354

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 106/282 (37%), Gaps = 40/282 (14%)
Query: 374 FSNVIGSSPIGTVYKGTL--SNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHK 431
           F+ VIG    G VY GTL  ++G +I           D  +    QF  +   +   +H 
Sbjct: 34  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGE--VSQFLTEGIIMKDFSHP 91
Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESEHLDWGMRLRIAMGMAYC 487
           N ++L+G C   E  + ++V  Y  +G L   I    H    + L  G  L++A GM Y 
Sbjct: 92  NVLSLLGICLRSEG-SPLVVLPYMKHGDLRNFIRNETHNPTVKDL-IGFGLQVAKGMKYL 149
Query: 488 LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-------------AMAEMXX 534
                  +    H  L +    L E +  K++D     ++             A   +  
Sbjct: 150 ------ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKW 203
Query: 535 XXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 594
                          +V++FGVLL+E++T   P   D  +  D     L G + LQ    
Sbjct: 204 MALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF-DITVYLLQGRRLLQPEYC 262
Query: 595 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
           P          + L E++  C     E RP+  ++ + +  I
Sbjct: 263 P----------DPLYEVMLKCWHPKAEMRPSFSELVSRISAI 294

>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1) Length = 350

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 92/226 (40%), Gaps = 37/226 (16%)
Query: 419 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH------IKESEHL 472
           R+++  L+ + H N V      EE       +V +Y   G LF+ I+       +E + L
Sbjct: 71  RREVAVLANMKHPNIVQYRESFEENGSL--YIVMDYCEGGDLFKRINAQKGVLFQEDQIL 128
Query: 473 DWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN------E 526
           DW +++ +A      L+H+H  +  I H  + S  + LT+D   +L D           E
Sbjct: 129 DWFVQICLA------LKHVH--DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVE 180
Query: 527 IAMAEMXXXXXXXXXXXXXXXXXN---VYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYL 583
           +A A +                 N   ++  G +L+E+ T  L +  + GS+++     +
Sbjct: 181 LARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCT--LKHAFEAGSMKNLVLKII 238
Query: 584 SGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
           SG  P      P    +  +    L  L+    + +P  RP++  I
Sbjct: 239 SGSFP------PVSLHYSYD----LRSLVSQLFKRNPRDRPSVNSI 274

>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A Resolution Length = 336

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 61/160 (38%), Gaps = 26/160 (16%)
Query: 377 VIGSSPIGTVYKGTLSN---GVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNF 433
           +IG    G VYKG+L      V++           +          K I  +  + H N 
Sbjct: 20  LIGRGRYGAVYKGSLDERPVAVKVFSFANRQNFINE----------KNIYRVPLMEHDNI 69
Query: 434 VNLIGFCEEEEPFTRM---MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEH 490
              I   E      RM   +V EY PNG+L +++ +  S   DW    R+A  +   L +
Sbjct: 70  ARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHTS---DWVSSCRLAHSVTRGLAY 126
Query: 491 MH-------QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF 523
           +H          P I+H  LNS  V +  D    +SD   
Sbjct: 127 LHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGL 166

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	664
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	2e-53
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	7e-52
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	3e-51
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	2e-45
3soc_A	322	Activin receptor type-2A; structural genomics cons	3e-42
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	6e-41
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	4e-39
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	7e-38
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	2e-35
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	2e-34
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	4e-34
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	4e-34
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	1e-31
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	2e-31
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	9e-31
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	1e-30
3q4u_A	301	Activin receptor type-1; structural genomics conso	1e-30
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	5e-30
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-25
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-11
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	6e-24
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	1e-22
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	2e-21
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	3e-21
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	4e-21
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	7e-21
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	1e-20
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	2e-20
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	7e-20
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	1e-19
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	1e-19
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	1e-19
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	1e-19
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	2e-19
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	2e-19
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	2e-19
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	3e-19
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	3e-19
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	7e-19
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	7e-19
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	1e-18
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	2e-18
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	2e-18
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	2e-18
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	3e-18
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	3e-18
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	3e-18
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	4e-18
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	5e-18
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	5e-18
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	6e-18
4aoj_A	329	High affinity nerve growth factor receptor; transf	6e-18
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	9e-18
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	1e-17
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	2e-17
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	2e-17
3pls_A	298	Macrophage-stimulating protein receptor; protein k	2e-17
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	3e-17
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	4e-17
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	4e-17
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	8e-17
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	8e-17
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	1e-16
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	2e-16
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	2e-16
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	3e-16
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	4e-16
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	4e-16
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	1e-15
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	1e-15
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	2e-15
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	2e-15
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	2e-15
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	4e-15
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	5e-15
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	9e-15
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	1e-14
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	1e-14
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	2e-14
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	2e-14
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	3e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-06
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	3e-14
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	1e-13
2a19_B	284	Interferon-induced, double-stranded RNA-activated	2e-13
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	3e-13
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	1e-12
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	2e-12
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	3e-12
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	3e-12
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	3e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-05
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	2e-11
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	3e-11
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	3e-11
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	4e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	5e-11
3uqc_A	286	Probable conserved transmembrane protein; structur	5e-11
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	6e-11
3ork_A	311	Serine/threonine protein kinase; structural genomi	8e-11
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	1e-10
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	3e-10
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	1e-09
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	1e-09
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	1e-09
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	1e-09
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	2e-09
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	2e-09
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	3e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	3e-09
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	4e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-07
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	6e-09
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	7e-09
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-05
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	2e-08
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	2e-08
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	3e-08
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	3e-08
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	4e-08
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	5e-08
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	8e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-05
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	9e-08
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	1e-07
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-05
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	4e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-05
3bhy_A	283	Death-associated protein kinase 3; death associate	4e-07
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	6e-07
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	6e-07
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	7e-07
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	7e-07
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	8e-07
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	9e-07
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-05
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	1e-06
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-04
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	2e-06
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	2e-06
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	3e-06
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	4e-06
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	5e-06
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	5e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-04
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	6e-06
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	7e-06
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	7e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-04
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	1e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-05
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	2e-05
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	2e-05
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	2e-05
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	3e-05
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	3e-05
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	4e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-05
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	5e-05
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	7e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-04
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-04
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	3e-04
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-04
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	4e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-04

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  184 bits (470), Expect = 2e-53
 Identities = 76/302 (25%), Positives = 139/302 (46%), Gaps = 43/302 (14%)

Query: 365 SELEAACEDFS--------NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEV 416
            EL+    +F         N +G    G VYKG + N   +AV  ++        + L+ 
Sbjct: 18  YELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDIT-TEELKQ 75

Query: 417 QFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH-IKESEHLDWG 475
           QF ++I  ++K  H+N V L+GF  + +     +V+ Y PNG+L + +  +  +  L W 
Sbjct: 76  QFDQEIKVMAKCQHENLVELLGFSSDGD--DLCLVYVYMPNGSLLDRLSCLDGTPPLSWH 133

Query: 476 MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAAT 535
           MR +IA G A  +  +H       H  + S+ + L E + AK+SD  F     +A  +  
Sbjct: 134 MRCKIAQGAANGINFLH--ENHHIHRDIKSANILLDEAFTAKISD--F----GLARASEK 185

Query: 536 SKK--LSS---------APSA-----SLESNVYNFGVLLFEMVTGRLPYLVDNG----SL 575
             +  ++S         AP A     + +S++Y+FGV+L E++TG     VD       L
Sbjct: 186 FAQTVMTSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPA--VDEHREPQLL 243

Query: 576 EDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
            D   +     + ++ ++D  ++  D   +E +  +   C+     KRP ++ +  +L+E
Sbjct: 244 LDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQE 303

Query: 636 IT 637
           +T
Sbjct: 304 MT 305

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  181 bits (461), Expect = 7e-52
 Identities = 80/298 (26%), Positives = 147/298 (49%), Gaps = 43/298 (14%)

Query: 365 SELEAACEDFS--NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKI 422
            EL+ A ++FS  N++G    G VYKG L++G  +AV  +     +      E+QF+ ++
Sbjct: 23  RELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQ----GGELQFQTEV 78

Query: 423 DTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH--IKESEHLDWGMRLRI 480
           + +S   H+N + L GFC       R++V+ Y  NG++   +    +    LDW  R RI
Sbjct: 79  EMISMAVHRNLLRLRGFCMTPT--ERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRI 136

Query: 481 AMGMAYCLEHMH-QLNPPIAHNYLNSSAVHLTEDYAAKLSD--LSFWNE---------IA 528
           A+G A  L ++H   +P I H  + ++ + L E++ A + D  L+   +         + 
Sbjct: 137 ALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVR 196

Query: 529 -----MA-EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGR------LPYLVDNGSLE 576
                +A E  +T K       +S +++V+ +GV+L E++TG+           D+  L 
Sbjct: 197 GTIGHIAPEYLSTGK-------SSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLL 249

Query: 577 DWAADYLSGVQPLQQFVDPTL-SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 633
           DW    L   + L+  VD  L  ++ +E++E L ++   C ++ P +RP M ++  +L
Sbjct: 250 DWVKGLLKEKK-LEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRML 306

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  179 bits (456), Expect = 3e-51
 Identities = 80/304 (26%), Positives = 133/304 (43%), Gaps = 52/304 (17%)

Query: 365 SELEAACEDFS--NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKI 422
            +LE A  +F    +IG    G VYKG L +G ++A+   +  S          +F  +I
Sbjct: 32  VDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPES-----SQGIEEFETEI 86

Query: 423 DTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH--IKESEHLDWGMRLRI 480
           +TLS   H + V+LIGFC+E      +++++Y  NG L  H++     +  + W  RL I
Sbjct: 87  ETLSFCRHPHLVSLIGFCDERN--EMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEI 144

Query: 481 AMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD--LSFWNEIAMAE------- 531
            +G A  L ++H     I H  + S  + L E++  K++D  +S   +            
Sbjct: 145 CIGAARGLHYLH--TRAIIHRDVKSINILLDENFVPKITDFGIS---KKGTELDQTHLST 199

Query: 532 --------MA---ATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG------S 574
                   +        +L+       +S+VY+FGV+LFE++  R    +         +
Sbjct: 200 VVKGTLGYIDPEYFIKGRLTE------KSDVYSFGVVLFEVLCARSA--IVQSLPREMVN 251

Query: 575 LEDWAADYLSGVQPLQQFVDPTL-SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 633
           L +WA +  +  Q L+Q VDP L      E L   G+    C+    E RP+M D+   L
Sbjct: 252 LAEWAVESHNNGQ-LEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKL 310

Query: 634 REIT 637
               
Sbjct: 311 EYAL 314

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score =  162 bits (411), Expect = 2e-45
 Identities = 65/282 (23%), Positives = 120/282 (42%), Gaps = 44/282 (15%)

Query: 373 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN 432
           +F   +  +  G ++KG    G +I V    V   +DW       F ++   L   +H N
Sbjct: 13  NFLTKLNENHSGELWKGRW-QGNDIVV---KVLKVRDWSTRKSRDFNEECPRLRIFSHPN 68

Query: 433 FVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMH 492
            + ++G C+        ++  + P G+L+  +H   +  +D    ++ A+ MA  +  +H
Sbjct: 69  VLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLH 128

Query: 493 QLNPPIAHNYLNSSAVHLTEDYAAKLSD--LSF------------WNEIAMA-EMAATSK 537
            L P I  + LNS +V + ED  A++S   + F            W    +A E      
Sbjct: 129 TLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQSPGRMYAPAW----VAPEA----- 179

Query: 538 KLSSAPSASLE--SNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP 595
            L   P  +    +++++F VLL+E+VT  +P+      L +        ++ L+    P
Sbjct: 180 -LQKKPEDTNRRSADMWSFAVLLWELVTREVPF----ADLSNMEIGMKVALEGLR----P 230

Query: 596 TL-SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
           T+           + +L+K C+  DP KRP    I  IL ++
Sbjct: 231 TIPPGISPH----VSKLMKICMNEDPAKRPKFDMIVPILEKM 268

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  154 bits (391), Expect = 3e-42
 Identities = 50/313 (15%), Positives = 105/313 (33%), Gaps = 54/313 (17%)

Query: 365 SELEAACEDFS--NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKI 422
             L           V      G V+K  L     +AV    +   + W      Q   ++
Sbjct: 17  ENLYFQSMPLQLLEVKARGRFGCVWKAQL-LNEYVAVKIFPIQDKQSW------QNEYEV 69

Query: 423 DTLSKVNHKNFVNLIGFCEEEEPFT--RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRI 480
            +L  + H+N +  IG  +          ++  +   G+L + +    +  + W     I
Sbjct: 70  YSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLK---ANVVSWNELCHI 126

Query: 481 AMGMAYCLEHMHQ--------LNPPIAHNYLNSSAVHLTEDYAAKLSD--LSFWNEIAMA 530
           A  MA  L ++H+          P I+H  + S  V L  +  A ++D  L+   E   +
Sbjct: 127 AETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKS 186

Query: 531 EMAATSKK----------LSSAPSASLESN----VYNFGVLLFEMVTGRLPYLVDNGSLE 576
                 +           L  A +   ++     +Y  G++L+E+ +        +G ++
Sbjct: 187 AGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAA---DGPVD 243

Query: 577 DWAADYLSGVQP-----------LQQFVDPTLSS--FDEEQLETLGELIKSCVRADPEKR 623
           ++   +   +             + +   P L         +  L E I+ C   D E R
Sbjct: 244 EYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEAR 303

Query: 624 PTMRDIAAILREI 636
            +   +   + ++
Sbjct: 304 LSAGCVGERITQM 316

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score =  150 bits (380), Expect = 6e-41
 Identities = 66/301 (21%), Positives = 129/301 (42%), Gaps = 45/301 (14%)

Query: 357 TGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGT-LSNGVEIAV--ASVSVASAKDWPKN 413
           + +P L  +E+E     +   IG    G V+KG  + +   +A+    +  +  +     
Sbjct: 11  SRLPTLADNEIE-----YEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIE 65

Query: 414 LEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD 473
              +F++++  +S +NH N V L G      P    MV E+ P G L+  +   ++  + 
Sbjct: 66  KFQEFQREVFIMSNLNHPNIVKLYGLMHN--PP--RMVMEFVPCGDLYHRLL-DKAHPIK 120

Query: 474 WGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNS-----SAVHLTEDYAAKLSD--LS-FWN 525
           W ++LR+ + +A  +E+M   NPPI H  L S      ++       AK++D  LS    
Sbjct: 121 WSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSV 180

Query: 526 EIAMAE------MA----ATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSL 575
                       MA       ++  +      +++ Y+F ++L+ ++TG  P+       
Sbjct: 181 HSVSGLLGNFQWMAPETIGAEEESYT-----EKADTYSFAMILYTILTGEGPF----DEY 231

Query: 576 EDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
                 +++ +   ++ + PT+    E+    L  +I+ C   DP+KRP    I   L E
Sbjct: 232 SYGKIKFINMI--REEGLRPTIP---EDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSE 286

Query: 636 I 636
           +
Sbjct: 287 L 287

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score =  145 bits (368), Expect = 4e-39
 Identities = 67/299 (22%), Positives = 123/299 (41%), Gaps = 62/299 (20%)

Query: 363 KRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKI 422
              +L          IG+   GTV++    +G ++AV    +   +D+      +F +++
Sbjct: 35  PWCDLN-----IKEKIGAGSFGTVHRAEW-HGSDVAV---KILMEQDFHAERVNEFLREV 85

Query: 423 DTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKES-EHLDWGMRLRIA 481
             + ++ H N V  +G   +       +V EY   G+L+  +H   + E LD   RL +A
Sbjct: 86  AIMKRLRHPNIVLFMGAVTQPPNL--SIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMA 143

Query: 482 MGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD--LSFWNEIAMAEMAATSKKL 539
             +A  + ++H  NPPI H  L S  + + + Y  K+ D  LS          A+T    
Sbjct: 144 YDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLS-------RLKASTFLSS 196

Query: 540 SS--------AP------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG 585
            S        AP       ++ +S+VY+FGV+L+E+ T + P+                 
Sbjct: 197 KSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPW---------------GN 241

Query: 586 VQPLQQFVD-------PTL-SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
           + P Q             +  + + +    +  +I+ C   +P KRP+   I  +LR +
Sbjct: 242 LNPAQVVAAVGFKCKRLEIPRNLNPQ----VAAIIEGCWTNEPWKRPSFATIMDLLRPL 296

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score =  142 bits (359), Expect = 7e-38
 Identities = 60/302 (19%), Positives = 109/302 (36%), Gaps = 61/302 (20%)

Query: 373 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN 432
           +   V+G    G V K       ++A+  +         ++    F  ++  LS+VNH N
Sbjct: 11  EVEEVVGRGAFGVVCKAKW-RAKDVAIKQIE-------SESERKAFIVELRQLSRVNHPN 62

Query: 433 FVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKES-EHLDWGMRLRIAMGMAYCLEHM 491
            V L G C    P    +V EYA  G+L+  +H  E   +      +   +  +  + ++
Sbjct: 63  IVKLYGACLN--PV--CLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYL 118

Query: 492 HQLNP-PIAHNYLNSSAVHLTEDY-AAKLSD--LS-FWNEIAMAE------MA------- 533
           H + P  + H  L    + L       K+ D   +                MA       
Sbjct: 119 HSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWMAPEVFEGS 178

Query: 534 ATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-----P 588
             S+K           +V+++G++L+E++T R P+      +   A   +  V      P
Sbjct: 179 NYSEK----------CDVFSWGIILWEVITRRKPF----DEIGGPAFRIMWAVHNGTRPP 224

Query: 589 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKL 648
           L + +   +             L+  C   DP +RP+M +I  I+  +    P    P  
Sbjct: 225 LIKNLPKPIE-----------SLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPGADEPLQ 273

Query: 649 SP 650
            P
Sbjct: 274 YP 275

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score =  133 bits (338), Expect = 2e-35
 Identities = 62/296 (20%), Positives = 113/296 (38%), Gaps = 51/296 (17%)

Query: 363 KRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKI 422
             +EL         +IG    G VY+     G E+AV +      +D  + +E   R++ 
Sbjct: 5   DFAELT-----LEEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIE-NVRQEA 57

Query: 423 DTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAM 482
              + + H N + L G C +E      +V E+A  G L   +     + +   + +  A+
Sbjct: 58  KLFAMLKHPNIIALRGVCLKEPNL--CLVMEFARGGPLNRVLS---GKRIPPDILVNWAV 112

Query: 483 GMAYCLEHMHQLNP-PIAH------NYL--NSSAVHLTEDYAAKLSD--LS-FWNEIAMA 530
            +A  + ++H     PI H      N L           +   K++D  L+  W+     
Sbjct: 113 QIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKM 172

Query: 531 EMAATSK-----KLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG 585
             A          + ++   S  S+V+++GVLL+E++TG +P+              + G
Sbjct: 173 SAAGAYAWMAPEVIRASMF-SKGSDVWSYGVLLWELLTGEVPF------------RGIDG 219

Query: 586 VQPLQQFVDPTL-----SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
           +          L     S+  E       +L++ C   DP  RP+  +I   L  I
Sbjct: 220 LAVAYGVAMNKLALPIPSTCPEP----FAKLMEDCWNPDPHSRPSFTNILDQLTTI 271

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score =  131 bits (331), Expect = 2e-34
 Identities = 68/299 (22%), Positives = 114/299 (38%), Gaps = 61/299 (20%)

Query: 364 RSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKID 423
             ++          IGS   GTVYKG     V  AV  ++V             F+ ++ 
Sbjct: 23  DGQIT-----VGQRIGSGSFGTVYKGKWHGDV--AVKMLNV---TAPTPQQLQAFKNEVG 72

Query: 424 TLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAM- 482
            L K  H N +  +G+          +V ++    +L+ H+H  E+   +    + IA  
Sbjct: 73  VLRKTRHVNILLFMGYSTAP-QL--AIVTQWCEGSSLYHHLHASET-KFEMKKLIDIARQ 128

Query: 483 ---GMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD--LSFWNEIAMAEMAATSK 537
              GM Y    +H  +  I H  L S+ + L ED   K+ D  L+               
Sbjct: 129 TARGMDY----LHAKS--IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQL 182

Query: 538 KLSS---APSA---------SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG 585
             S    AP           S +S+VY FG++L+E++TG+LPY               S 
Sbjct: 183 SGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPY---------------SN 227

Query: 586 VQPLQQFVD--------PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
           +    Q ++        P LS       + +  L+  C++   ++RP+   I A + E+
Sbjct: 228 INNRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEEL 286

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score =  132 bits (333), Expect = 4e-34
 Identities = 71/327 (21%), Positives = 118/327 (36%), Gaps = 61/327 (18%)

Query: 365 SELEAACEDFS--NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKI 422
           SE     ++     +IG    G VYKG+L +   +AV   S A+ +++         K I
Sbjct: 6   SEPSLDLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFANRQNF------INEKNI 58

Query: 423 DTLSKVNHKNFVNLIGFCEEEEPFTR---MMVFEYAPNGTLFEHIHIKESEHLDWGMRLR 479
             +  + H N    I   E      R   ++V EY PNG+L +++        DW    R
Sbjct: 59  YRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLS---LHTSDWVSSCR 115

Query: 480 IAMGMAYCLEHMH-------QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF--------- 523
           +A  +   L ++H          P I+H  LNS  V +  D    +SD            
Sbjct: 116 LAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRL 175

Query: 524 ----WNEIA----------MA-EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPY 568
                 + A          MA E+   +  L    SA  + ++Y  G++ +E+   R   
Sbjct: 176 VRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFM-RCTD 234

Query: 569 LVDNGSLEDWAADYLSGVQPLQQFVD-----------PTLS---SFDEEQLETLGELIKS 614
           L    S+ ++   + + V     F D           P        +   + +L E I+ 
Sbjct: 235 LFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIED 294

Query: 615 CVRADPEKRPTMRDIAAILREITGITP 641
           C   D E R T +     + E+  I  
Sbjct: 295 CWDQDAEARLTAQXAEERMAELMMIWE 321

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score =  124 bits (313), Expect = 1e-31
 Identities = 59/302 (19%), Positives = 104/302 (34%), Gaps = 55/302 (18%)

Query: 362 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKK 421
            + S+L         V+G    G   K T        +    +     + +  +  F K+
Sbjct: 7   FRPSDLI-----HGEVLGKGCFGQAIKVTH-RETGEVMV---MKELIRFDEETQRTFLKE 57

Query: 422 IDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLR-- 479
           +  +  + H N +  IG   +++      + EY   GTL   I         W  R+   
Sbjct: 58  VKVMRCLEHPNVLKFIGVLYKDKRL--NFITEYIKGGTLRGIIK-SMDSQYPWSQRVSFA 114

Query: 480 --IAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMAEMA 533
             IA GMAY    +H +N  I H  LNS    + E+    ++D  L+    +E    E  
Sbjct: 115 KDIASGMAY----LHSMN--IIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGL 168

Query: 534 ATSKKLSS-------------APSA------SLESNVYNFGVLLFEMVTGRLPYLVDNGS 574
            + KK                AP          + +V++FG++L E++            
Sbjct: 169 RSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNAD------ 222

Query: 575 LEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR 634
             D+    +     ++ F+D            +   +   C   DPEKRP+   +   L 
Sbjct: 223 -PDYLPRTMDFGLNVRGFLDRYCP---PNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLE 278

Query: 635 EI 636
            +
Sbjct: 279 TL 280

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score =  124 bits (312), Expect = 2e-31
 Identities = 47/301 (15%), Positives = 96/301 (31%), Gaps = 58/301 (19%)

Query: 363 KRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKI 422
              +LE        +IG    G VY G         VA + +   +   ++    F++++
Sbjct: 31  PFEQLE-----IGELIGKGRFGQVYHGRWHG----EVA-IRLIDIERDNEDQLKAFKREV 80

Query: 423 DTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAM 482
               +  H+N V  +G C         ++       TL+  +   +   LD     +IA 
Sbjct: 81  MAYRQTRHENVVLFMGACMSPPHL--AIITSLCKGRTLYSVVRDAK-IVLDVNKTRQIAQ 137

Query: 483 ----GMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD-----------LSFWNEI 527
               GM Y    +H     I H  L S  V   ++    ++D                + 
Sbjct: 138 EIVKGMGY----LHA--KGILHKDLKSKNV-FYDNGKVVITDFGLFSISGVLQAGRREDK 190

Query: 528 AMAE------MA------ATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSL 575
              +      +A       +          S  S+V+  G + +E+     P+     + 
Sbjct: 191 LRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPF----KTQ 246

Query: 576 EDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
              A  +  G           +        + + +++  C   + E+RPT   +  +L +
Sbjct: 247 PAEAIIWQMGTGMKPNLSQIGMG-------KEISDILLFCWAFEQEERPTFTKLMDMLEK 299

Query: 636 I 636
           +
Sbjct: 300 L 300

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score =  122 bits (308), Expect = 1e-30
 Identities = 59/304 (19%), Positives = 113/304 (37%), Gaps = 56/304 (18%)

Query: 374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF 433
               IG    G V+ G    G ++AV          W          +I     + H+N 
Sbjct: 41  MVKQIGKGRYGEVWMGKW-RGEKVAVKVFFTTEEASW------FRETEIYQTVLMRHENI 93

Query: 434 VNLIGFCEEEEPFTR--MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM 491
           +  I    +         ++ +Y  NG+L++++    S  LD    L++A      L H+
Sbjct: 94  LGFIAADIKGTGSWTQLYLITDYHENGSLYDYLK---STTLDAKSMLKLAYSSVSGLCHL 150

Query: 492 H------QLNPPIAHNYLNSSAVHLTEDYAAKLSDL---------SFWNEIA-------- 528
           H      Q  P IAH  L S  + + ++    ++DL         +   +I         
Sbjct: 151 HTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTK 210

Query: 529 --MA-EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY--L 583
             M  E+   S   +   S  + +++Y+FG++L+E+    +      G +E++   Y  L
Sbjct: 211 RYMPPEVLDESLNRNHFQS-YIMADMYSFGLILWEVARRCVS----GGIVEEYQLPYHDL 265

Query: 584 SGVQP-LQQFVD--------PTLSS--FDEEQLETLGELIKSCVRADPEKRPTMRDIAAI 632
               P  +   +        P+  +    +E L  +G+L+  C   +P  R T   +   
Sbjct: 266 VPSDPSYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKT 325

Query: 633 LREI 636
           L ++
Sbjct: 326 LAKM 329

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score =  121 bits (305), Expect = 1e-30
 Identities = 56/303 (18%), Positives = 106/303 (34%), Gaps = 54/303 (17%)

Query: 374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF 433
               +G    G V++G+   G  +AV   S    K W          ++     + H+N 
Sbjct: 12  LLECVGKGRYGEVWRGSW-QGENVAVKIFSSRDEKSW------FRETELYNTVMLRHENI 64

Query: 434 VNLIGFC--EEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM 491
           +  I              ++  Y   G+L++++       LD    LRI + +A  L H+
Sbjct: 65  LGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQ---LTTLDTVSCLRIVLSIASGLAHL 121

Query: 492 H------QLNPPIAHNYLNSSAVHLTEDYAAKLSDL----SFWNEIAMAEMAATSKK--- 538
           H      Q  P IAH  L S  + + ++    ++DL             ++    +    
Sbjct: 122 HIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTK 181

Query: 539 -------LSSAPSASLESN-----VYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY--LS 584
                  L          +     ++ FG++L+E+    +      G +ED+   +  + 
Sbjct: 182 RYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSN----GIVEDYKPPFYDVV 237

Query: 585 GVQP-LQQFVD--------PTLSS--FDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 633
              P  +            P + +  F +  L +L +L+K C   +P  R T   I   L
Sbjct: 238 PNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTL 297

Query: 634 REI 636
            +I
Sbjct: 298 TKI 300

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score =  120 bits (302), Expect = 5e-30
 Identities = 56/303 (18%), Positives = 109/303 (35%), Gaps = 54/303 (17%)

Query: 374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF 433
               IG    G V++G    G E+AV   S    + W          +I     + H+N 
Sbjct: 46  LQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREERSW------FREAEIYQTVMLRHENI 98

Query: 434 VNLIGFCEEEEPFTR--MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM 491
           +  I    ++        +V +Y  +G+LF++++      +     +++A+  A  L H+
Sbjct: 99  LGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLN---RYTVTVEGMIKLALSTASGLAHL 155

Query: 492 H------QLNPPIAHNYLNSSAVHLTEDYAAKLSDLS----FWNEIAMAEMAATSKK--- 538
           H      Q  P IAH  L S  + + ++    ++DL       +     ++A   +    
Sbjct: 156 HMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTK 215

Query: 539 --------LSSAPSASLESN----VYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY--LS 584
                     S      ES     +Y  G++ +E+           G  ED+   Y  L 
Sbjct: 216 RYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIG----GIHEDYQLPYYDLV 271

Query: 585 GVQP-LQQFVD--------PTLSS--FDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 633
              P +++           P + +     E L  + ++++ C  A+   R T   I   L
Sbjct: 272 PSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTL 331

Query: 634 REI 636
            ++
Sbjct: 332 SQL 334

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  118 bits (299), Expect = 6e-28
 Identities = 40/164 (24%), Positives = 64/164 (39%), Gaps = 17/164 (10%)

Query: 18  ISQSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSDGKVVN 77
              S      L  E   L+  ++ +  D    L  W S     NPC++ GV C D KV +
Sbjct: 2   FQASPSQS--LYREIHQLISFKDVLP-DK-NLLPDWSS---NKNPCTFDGVTCRDDKVTS 54

Query: 78  LNLKDLCLE---GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134
           ++L    L      ++  + SLT ++S+ L N+  +G +   F     L  LD   N+ S
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLS 113

Query: 135 GPLPNDLGINH--SLTILLLDNNDFVGSLSPEIY----KLQVLS 172
           GP+     +     L  L + +N                L+VL 
Sbjct: 114 GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD 157

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 89.2 bits (222), Expect = 1e-18
 Identities = 26/88 (29%), Positives = 44/88 (50%)

Query: 85  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 144
           LEG +  E+  +  ++++IL  N  +G IP G      L  +   +N  +G +P  +G  
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513

Query: 145 HSLTILLLDNNDFVGSLSPEIYKLQVLS 172
            +L IL L NN F G++  E+   + L 
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLI 541

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 88.0 bits (219), Expect = 3e-18
 Identities = 25/87 (28%), Positives = 38/87 (43%)

Query: 85  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 144
             G + P + + + + S+ L  N  SG IP   G L +L  L    N   G +P +L   
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465

Query: 145 HSLTILLLDNNDFVGSLSPEIYKLQVL 171
            +L  L+LD ND  G +   +     L
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNL 492

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 88.0 bits (219), Expect = 3e-18
 Identities = 25/88 (28%), Positives = 44/88 (50%)

Query: 85  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 144
           L GT+   + SL+ ++ + L  N   G IP+    ++ LE L    N+ +G +P+ L   
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489

Query: 145 HSLTILLLDNNDFVGSLSPEIYKLQVLS 172
            +L  + L NN   G +   I +L+ L+
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLA 517

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 84.6 bits (210), Expect = 4e-17
 Identities = 34/115 (29%), Positives = 54/115 (46%)

Query: 85  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 144
           L G +   + + T++  I L NN  +G IP+  G LE L +L   +N+FSG +P +LG  
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537

Query: 145 HSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIKWN 199
            SL  L L+ N F G++   ++K      +    G+     K +    E     N
Sbjct: 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 84.2 bits (209), Expect = 5e-17
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 85  LEGTLAPEI--QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLG 142
             G + P +       ++ + L+NN F+G IP       EL  L    N  SG +P+ LG
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439

Query: 143 INHSLTILLLDNNDFVGSLSPEIYKLQVL 171
               L  L L  N   G +  E+  ++ L
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTL 468

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 79.6 bits (197), Expect = 2e-15
 Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 2/93 (2%)

Query: 78  LNLKDLCLEGTLAPEIQ-SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 136
           L+L +    G +   +  +   +  + L  N F G +P  FG    LE L    NNFSG 
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333

Query: 137 LPND-LGINHSLTILLLDNNDFVGSLSPEIYKL 168
           LP D L     L +L L  N+F G L   +  L
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 79.2 bits (196), Expect = 2e-15
 Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 7/99 (7%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 137
           L++        + P +   + ++ + +  N  SG          EL++L+   N F GP+
Sbjct: 205 LDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263

Query: 138 PNDLGINHSLTILLLDNNDFVGSLSPEIY----KLQVLS 172
           P       SL  L L  N F G +   +      L  L 
Sbjct: 264 PP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 78.8 bits (195), Expect = 2e-15
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 3/97 (3%)

Query: 76  VNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 135
            +L++    L G  +  I + T +K + + +N F G IP     L+ L+ L    N F+G
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTG 283

Query: 136 PLPNDLGINH-SLTILLLDNNDFVGSLSPEIYKLQVL 171
            +P+ L     +LT L L  N F G++ P      +L
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 74.9 bits (185), Expect = 4e-14
 Identities = 24/103 (23%), Positives = 43/103 (41%)

Query: 70  CSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFG 129
               K  +     L  +G  + ++  L+      + +  + G     F     +  LD  
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640

Query: 130 HNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 172
           +N  SG +P ++G    L IL L +ND  GS+  E+  L+ L+
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 683

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 74.6 bits (184), Expect = 5e-14
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 85  LEGTLAPEIQSLT-HIKSIILRNNSFSGIIPEGFGE--LEELEVLDFGHNNFSGPLPNDL 141
             G L   + +L+  + ++ L +N+FSG I     +     L+ L   +N F+G +P  L
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414

Query: 142 GINHSLTILLLDNNDFVGSLSPEIYKLQVLS 172
                L  L L  N   G++   +  L  L 
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.4 bits (181), Expect = 1e-13
 Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 4/129 (3%)

Query: 48  GALTSWRSCDTENNPCSWFGVE----CSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSII 103
                 + C    N   + G+              N+      G  +P   +   +  + 
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638

Query: 104 LRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSP 163
           +  N  SG IP+  G +  L +L+ GHN+ SG +P+++G    L IL L +N   G +  
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698

Query: 164 EIYKLQVLS 172
            +  L +L+
Sbjct: 699 AMSALTMLT 707

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 72.6 bits (179), Expect = 2e-13
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 85  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 144
           L G +  EI S+ ++  + L +N  SG IP+  G+L  L +LD   N   G +P  +   
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703

Query: 145 HSLTILLLDNNDFVGSLSPEIYKLQVLSES 174
             LT + L NN+  G + PE+ + +    +
Sbjct: 704 TMLTEIDLSNNNLSGPI-PEMGQFETFPPA 732

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 72.6 bits (179), Expect = 2e-13
 Identities = 25/97 (25%), Positives = 34/97 (35%), Gaps = 6/97 (6%)

Query: 78  LNLKDLCLEGTLAPEIQ---SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134
           L+L    + G              +K + +  N  SG +         LE LD   NNFS
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFS 213

Query: 135 GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVL 171
             +P  LG   +L  L +  N   G  S  I     L
Sbjct: 214 TGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTEL 249

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  105 bits (264), Expect = 5e-25
 Identities = 40/177 (22%), Positives = 66/177 (37%), Gaps = 34/177 (19%)

Query: 29  NDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSD----GKVVNLNLKDLC 84
             +  ALL++++ +       L+SW    T+    +W GV C       +V NL+L  L 
Sbjct: 5   PQDKQALLQIKKDLGNPT--TLSSWLP-TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61

Query: 85  LEGTLA---------------------------PEIQSLTHIKSIILRNNSFSGIIPEGF 117
           L                                P I  LT +  + + + + SG IP+  
Sbjct: 62  LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121

Query: 118 GELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSES 174
            +++ L  LDF +N  SG LP  +    +L  +  D N   G++         L  S
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 72.6 bits (179), Expect = 5e-14
 Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 7/105 (6%)

Query: 77  NLNLKDLCL-----EGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 131
           NLNL  + L     EG  +    S  + + I L  NS +  + +  G  + L  LD  +N
Sbjct: 196 NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNN 254

Query: 132 NFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQV 176
              G LP  L     L  L +  N+  G + P+   LQ    S  
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAY 298

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 71.4 bits (176), Expect = 1e-13
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 85  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 144
           L G + P   +L  +  + L  N   G     FG  +  + +    N+ +  L   +G++
Sbjct: 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLS 243

Query: 145 HSLTILLLDNNDFVGSLSPEIYKLQVLS 172
            +L  L L NN   G+L   + +L+ L 
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLH 271

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 65.2 bits (160), Expect = 1e-11
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 77  NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 136
            ++L    L   L  ++    ++  + LRNN   G +P+G  +L+ L  L+   NN  G 
Sbjct: 225 KIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 137 LPNDLGINHSLTILLLDNND 156
           +P   G      +    NN 
Sbjct: 284 IPQ-GGNLQRFDVSAYANNK 302

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score =  103 bits (259), Expect = 6e-24
 Identities = 75/330 (22%), Positives = 118/330 (35%), Gaps = 81/330 (24%)

Query: 344 ATGLSGQLQKAFVTGVPK----LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAV 399
              L+ +        VPK    L   +L          IG    G V+ G L       V
Sbjct: 89  QQPLTKKSGVVLHRAVPKDKWVLNHEDLV-----LGEQIGRGNFGEVFSGRL-RADNTLV 142

Query: 400 ASVSVASAK-DWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNG 458
           A   V S +   P +L+ +F ++   L + +H N V LIG C +++P    +V E    G
Sbjct: 143 A---VKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPI--YIVMELVQGG 197

Query: 459 TLFEHIHIKESEHLDWGMRLR----IAMGMAYCLEHMHQLNPPIAHNYLNSSAVH----- 509
                +   E   L     L+     A GM Y LE                  +H     
Sbjct: 198 DFLTFLR-TEGARLRVKTLLQMVGDAAAGMEY-LESK---------CC-----IHRDLAA 241

Query: 510 ----LTEDYAAKLSD--LSFWNEIAMAEMAATSKKLS---SAPSA------SLESNVYNF 554
               +TE    K+SD  +S      +   +   +++    +AP A      S ES+V++F
Sbjct: 242 RNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSF 301

Query: 555 GVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVD------PTLSSFDEEQLET 607
           G+LL+E  + G  PY              LS  Q  +          P L        + 
Sbjct: 302 GILLWETFSLGASPY------------PNLSNQQTREFVEKGGRLPCPELCP------DA 343

Query: 608 LGELIKSCVRADPEKRPTMRDIAAILREIT 637
           +  L++ C   +P +RP+   I   L+ I 
Sbjct: 344 VFRLMEQCWAYEPGQRPSFSTIYQELQSIR 373

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 98.5 bits (246), Expect = 1e-22
 Identities = 55/312 (17%), Positives = 109/312 (34%), Gaps = 84/312 (26%)

Query: 362 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAK-DWPKNLEVQFRK 420
           LK +E +        V+GS   GTVYKG      E     V++   +         +   
Sbjct: 12  LKETEFK-----KIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD 66

Query: 421 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD----WGM 476
           +   ++ V++ +   L+G C         ++ +  P G L +++  +  +++        
Sbjct: 67  EAYVMASVDNPHVCRLLGICLTSTV---QLITQLMPFGCLLDYVR-EHKDNIGSQYLLNW 122

Query: 477 RLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--LSFWN 525
            ++IA GM Y LE                  VH         +      K++D  L+   
Sbjct: 123 CVQIAKGMNY-LEDR---------RL-----VHRDLAARNVLVKTPQHVKITDFGLAKLL 167

Query: 526 EIAMAEMAATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPY------- 568
                E  A   K+     A  +      + +S+V+++GV ++E++T G  PY       
Sbjct: 168 GAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE 227

Query: 569 ---LVDNGS-LEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRP 624
              +++ G  L           QP                   +  +++ C   D + RP
Sbjct: 228 ISSILEKGERLP----------QP-------------PICTIDVYMIMRKCWMIDADSRP 264

Query: 625 TMRDIAAILREI 636
             R++     ++
Sbjct: 265 KFRELIIEFSKM 276

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 94.3 bits (235), Expect = 2e-21
 Identities = 49/291 (16%), Positives = 98/291 (33%), Gaps = 43/291 (14%)

Query: 384 GTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEE 442
             V     L +G   A+  +     +D       + +++ D     NH N + L+ +C  
Sbjct: 43  SYVDLVEGLHDGHFYALKRILCHEQQD-----REEAQREADMHRLFNHPNILRLVAYCLR 97

Query: 443 EEPFTRM--MVFEYAPNGTLFEHI--HIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPI 498
           E        ++  +   GTL+  I     +   L     L + +G+   LE +H      
Sbjct: 98  ERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHA--KGY 155

Query: 499 AHNYLNSSAVHLTEDYAAKLSDL----------SFWNEIAMAEMAATSK----------- 537
           AH  L  + + L ++    L DL              +    +  A  +           
Sbjct: 156 AHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELF 215

Query: 538 KLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL 597
            + S       ++V++ G +L+ M+ G  PY +     +  A    + +        P  
Sbjct: 216 SVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLSI------PQS 269

Query: 598 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKL 648
                     L +L+ S +  DP +RP +  + + L  +    P     ++
Sbjct: 270 PRHSSA----LWQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAPGQHTTQI 316

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 94.3 bits (235), Expect = 3e-21
 Identities = 61/301 (20%), Positives = 110/301 (36%), Gaps = 62/301 (20%)

Query: 362 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQ-FRK 420
            K +EL         V+GS   GTV+KG      E     V +   +D       Q    
Sbjct: 10  FKETELR-----KLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTD 64

Query: 421 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD----WGM 476
            +  +  ++H + V L+G C         +V +Y P G+L +H+  +    L        
Sbjct: 65  HMLAIGSLDHAHIVRLLGLCPGSSL---QLVTQYLPLGSLLDHVR-QHRGALGPQLLLNW 120

Query: 477 RLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--LSFWN 525
            ++IA GM Y LE                  VH         L      +++D  ++   
Sbjct: 121 GVQIAKGMYY-LEEH---------GM-----VHRNLAARNVLLKSPSQVQVADFGVADLL 165

Query: 526 EIAMAEMAATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSL 575
                ++  +  K      A  +      + +S+V+++GV ++E++T G  PY      L
Sbjct: 166 PPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPY--AGLRL 223

Query: 576 EDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
            +   D L   + L Q   P + +        +  ++  C   D   RPT +++A     
Sbjct: 224 AE-VPDLLEKGERLAQ---PQICT------IDVYMVMVKCWMIDENIRPTFKELANEFTR 273

Query: 636 I 636
           +
Sbjct: 274 M 274

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 93.1 bits (232), Expect = 4e-21
 Identities = 66/315 (20%), Positives = 115/315 (36%), Gaps = 72/315 (22%)

Query: 360 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVA--SAKDWPKNLEV 416
            K++  +L      F+  +G      ++KG     G    +    V         +N   
Sbjct: 3   HKIRNEDLI-----FNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSE 57

Query: 417 QFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESE-HLDW- 474
            F +    +SK++HK+ V   G C   +    ++V E+   G+L  ++   ++  ++ W 
Sbjct: 58  SFFEAASMMSKLSHKHLVLNYGVCVCGDEN--ILVQEFVKFGSLDTYLKKNKNCINILWK 115

Query: 475 -GMRLRIAMGMAYCLEHMHQLNPPIAH------NYL--NSSAVHLTEDYAAKLSD--LSF 523
             +  ++A  M + LE        + H      N L               KLSD  +S 
Sbjct: 116 LEVAKQLAAAMHF-LEENT-----LIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISI 169

Query: 524 W---NEIA------MA-EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDN 572
                +I       +  E     K L+ A      ++ ++FG  L+E+ + G  P     
Sbjct: 170 TVLPKDILQERIPWVPPECIENPKNLNLA------TDKWSFGTTLWEICSGGDKPL---- 219

Query: 573 GSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE-----TLGELIKSCVRADPEKRPTMR 627
                 A   L   + L QF +      D  QL       L  LI +C+  +P+ RP+ R
Sbjct: 220 -----SA---LDSQRKL-QFYE------DRHQLPAPKAAELANLINNCMDYEPDHRPSFR 264

Query: 628 DIAAILREITGITPD 642
            I   L  +   TPD
Sbjct: 265 AIIRDLNSL--FTPD 277

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 93.2 bits (232), Expect = 7e-21
 Identities = 56/324 (17%), Positives = 102/324 (31%), Gaps = 91/324 (28%)

Query: 362 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKK 421
            +   L+     + + +G    G+V         +   A V+V   +    + +  F+++
Sbjct: 20  FEERHLK-----YISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQRE 74

Query: 422 IDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD----WGMR 477
           I  L  ++    V   G        +  +V EY P+G L + +  +    LD        
Sbjct: 75  IQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQ-RHRARLDASRLLLYS 133

Query: 478 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--LS---- 522
            +I  GM Y L          +        VH         +  +   K++D  L+    
Sbjct: 134 SQICKGMEY-LG---------SRRC-----VHRDLAARNILVESEAHVKIADFGLAKLLP 178

Query: 523 ----------------FWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GR 565
                           FW     A  + +    S        S+V++FGV+L+E+ T   
Sbjct: 179 LDKDYYVVREPGQSPIFW----YAPESLSDNIFSRQ------SDVWSFGVVLYELFTYCD 228

Query: 566 LPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLET-------------LGELI 612
                    L     +    V  L + +         E LE              + EL+
Sbjct: 229 KSCSPSAEFLRMMGCER--DVPALSRLL---------ELLEEGQRLPAPPACPAEVHELM 277

Query: 613 KSCVRADPEKRPTMRDIAAILREI 636
           K C    P+ RP+   +   L  +
Sbjct: 278 KLCWAPSPQDRPSFSALGPQLDML 301

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 94.5 bits (235), Expect = 1e-20
 Identities = 64/315 (20%), Positives = 115/315 (36%), Gaps = 95/315 (30%)

Query: 362 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKK 421
           ++R+++        + +G    G VY+G       + VA   V + K+    +E +F K+
Sbjct: 217 MERTDIT-----MKHKLGGGQYGEVYEGVW-KKYSLTVA---VKTLKEDTMEVE-EFLKE 266

Query: 422 IDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMR 477
              + ++ H N V L+G C  E PF   ++ E+   G L +++     + +       M 
Sbjct: 267 AAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVSAVVLLYMA 324

Query: 478 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--LS---- 522
            +I+  M Y LE           N+     +H         + E++  K++D  LS    
Sbjct: 325 TQISSAMEY-LEKK---------NF-----IHRNLAARNCLVGENHLVKVADFGLSRLMT 369

Query: 523 --------------FWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLP 567
                          W     A  +    K S        S+V+ FGVLL+E+ T G  P
Sbjct: 370 GDTYTAHAGAKFPIKW----TAPESLAYNKFSIK------SDVWAFGVLLWEIATYGMSP 419

Query: 568 YLVDNGSLEDWAADYLSGVQPLQQFVD------PTLSSFDEEQLETLGELIKSCVRADPE 621
           Y              +   Q  +          P          E + EL+++C + +P 
Sbjct: 420 Y------------PGIDLSQVYELLEKDYRMERPEGCP------EKVYELMRACWQWNPS 461

Query: 622 KRPTMRDIAAILREI 636
            RP+  +I      +
Sbjct: 462 DRPSFAEIHQAFETM 476

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 91.2 bits (227), Expect = 2e-20
 Identities = 62/317 (19%), Positives = 104/317 (32%), Gaps = 91/317 (28%)

Query: 362 LKRSELEAACEDFSNVIGSSPIGTVYKGTL--SNGVEIAVASVSVASAKDWPKNLEVQFR 419
           +   +L          +G    G V +G     +G  ++VA   +             F 
Sbjct: 15  IGEKDLR-----LLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFI 69

Query: 420 KKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD----WG 475
           ++++ +  ++H+N + L G      P    MV E AP G+L + +  K   H        
Sbjct: 70  REVNAMHSLDHRNLIRLYGVVLTP-PM--KMVTELAPLGSLLDRLR-KHQGHFLLGTLSR 125

Query: 476 MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--LSFW 524
             +++A GM Y LE            +     +H         L      K+ D  L   
Sbjct: 126 YAVQVAEGMGY-LESK---------RF-----IHRDLAARNLLLATRDLVKIGDFGLMRA 170

Query: 525 NEIAMAE-MAATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNG 573
                   +    +K+     AP +      S  S+ + FGV L+EM T G+ P+     
Sbjct: 171 LPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPW----- 225

Query: 574 SLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGE--------------LIKSCVRAD 619
                    L+G Q L              +++  GE              ++  C    
Sbjct: 226 -------IGLNGSQIL-------------HKIDKEGERLPRPEDCPQDIYNVMVQCWAHK 265

Query: 620 PEKRPTMRDIAAILREI 636
           PE RPT   +   L E 
Sbjct: 266 PEDRPTFVALRDFLLEA 282

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 89.7 bits (223), Expect = 7e-20
 Identities = 57/326 (17%), Positives = 105/326 (32%), Gaps = 94/326 (28%)

Query: 362 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAK-DWPKNLEVQFRK 420
            ++  L+         +G    G V         +     V+V S K +   N     +K
Sbjct: 18  FEKRFLK-----RIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKK 72

Query: 421 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI-----HIKESEHLDWG 475
           +I+ L  + H+N V   G C E+      ++ E+ P+G+L E++      I   + L + 
Sbjct: 73  EIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYA 132

Query: 476 MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--LS-- 522
             ++I  GM Y L             Y     VH         +  ++  K+ D  L+  
Sbjct: 133 --VQICKGMDY-LGSR---------QY-----VHRDLAARNVLVESEHQVKIGDFGLTKA 175

Query: 523 ------------------FWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT- 563
                             FW     A       K   A      S+V++FGV L E++T 
Sbjct: 176 IETDKEYYTVKDDRDSPVFW----YAPECLMQSKFYIA------SDVWSFGVTLHELLTY 225

Query: 564 GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLET-------------LGE 610
                      L+     +  G   + + V           L+              + +
Sbjct: 226 CDSDSSPMALFLKMIGPTH--GQMTVTRLV---------NTLKEGKRLPCPPNCPDEVYQ 274

Query: 611 LIKSCVRADPEKRPTMRDIAAILREI 636
           L++ C    P  R + +++      +
Sbjct: 275 LMRKCWEFQPSNRTSFQNLIEGFEAL 300

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 62/318 (19%), Positives = 104/318 (32%), Gaps = 80/318 (25%)

Query: 362 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAK-DWPKNLEVQFRK 420
             +  L+         +G    G V         +     V+V + K D        +++
Sbjct: 28  FHKRYLK-----KIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQ 82

Query: 421 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD-WGMRLR 479
           +ID L  + H++ +   G CE+    +  +V EY P G+L +++               +
Sbjct: 83  EIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRHSIGLAQLLLFAQQ 142

Query: 480 IAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--LS------ 522
           I  GMAY L          A +Y     +H         L  D   K+ D  L+      
Sbjct: 143 ICEGMAY-LH---------AQHY-----IHRDLAARNVLLDNDRLVKIGDFGLAKAVPEG 187

Query: 523 --------------FWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLP 567
                         FW     A       K   A      S+V++FGV L+E++T     
Sbjct: 188 HEYYRVREDGDSPVFW----YAPECLKEYKFYYA------SDVWSFGVTLYELLTHCDSS 237

Query: 568 YLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE--QLE-------TLGELIKSCVRA 618
                  LE              Q     L+   E   +L         +  L+K+C   
Sbjct: 238 QSPPTKFLELIGIAQ-------GQMTVLRLTELLERGERLPRPDKCPAEVYHLMKNCWET 290

Query: 619 DPEKRPTMRDIAAILREI 636
           +   RPT  ++  IL+ +
Sbjct: 291 EASFRPTFENLIPILKTV 308

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 91.0 bits (226), Expect = 1e-19
 Identities = 75/338 (22%), Positives = 123/338 (36%), Gaps = 97/338 (28%)

Query: 344 ATGLSGQLQKAFVTGVPKLKRS-----ELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIA 398
           A GL  +L     T  P+ +       E+          +G    G V+ GT +    +A
Sbjct: 153 ADGLCHRLTTVCPTSKPQTQGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVA 212

Query: 399 VASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNG 458
           + ++   +           F ++   + K+ H+  V L      EEP    +V EY   G
Sbjct: 213 IKTLKPGTMS------PEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPI--YIVTEYMSKG 263

Query: 459 TLFEHIHIKESEHLDW----GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH----- 509
           +L + +  +  ++L       M  +IA GMAY +E M         NY     VH     
Sbjct: 264 SLLDFLKGETGKYLRLPQLVDMAAQIASGMAY-VERM---------NY-----VHRDLRA 308

Query: 510 ----LTEDYAAKLSD--LS------------------FWNEIAMAEMAATSKKLSSAPSA 545
               + E+   K++D  L+                   W     A  AA   + +     
Sbjct: 309 ANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKW----TAPEAALYGRFTIK--- 361

Query: 546 SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVD------PTLS 598
              S+V++FG+LL E+ T GR+PY              +   + L Q         P   
Sbjct: 362 ---SDVWSFGILLTELTTKGRVPY------------PGMVNREVLDQVERGYRMPCPPEC 406

Query: 599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
                  E+L +L+  C R +PE+RPT   + A L + 
Sbjct: 407 P------ESLHDLMCQCWRKEPEERPTFEYLQAFLEDY 438

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 56/301 (18%), Positives = 111/301 (36%), Gaps = 62/301 (20%)

Query: 362 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAK-DWPKNLEVQFRK 420
           LK +E +        V+GS   GTVYKG      E     V++   +         +   
Sbjct: 12  LKETEFK-----KIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD 66

Query: 421 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD----WGM 476
           +   ++ V++ +   L+G C         ++ +  P G L +++  +  +++        
Sbjct: 67  EAYVMASVDNPHVCRLLGICLTSTV---QLITQLMPFGCLLDYVR-EHKDNIGSQYLLNW 122

Query: 477 RLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--LSFWN 525
            ++IA GM Y LE                  VH         +      K++D  L+   
Sbjct: 123 CVQIAKGMNY-LEDR---------RL-----VHRDLAARNVLVKTPQHVKITDFGLAKLL 167

Query: 526 EIAMAEMAATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSL 575
                E  A   K+     A  +      + +S+V+++GV ++E++T G  PY  D    
Sbjct: 168 GAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPY--DGIPA 225

Query: 576 EDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
            +  +  L   + L Q   P + +        +  ++  C   D + RP  R++     +
Sbjct: 226 SE-ISSILEKGERLPQ---PPICT------IDVYMIMVKCWMIDADSRPKFRELIIEFSK 275

Query: 636 I 636
           +
Sbjct: 276 M 276

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 90.9 bits (226), Expect = 1e-19
 Identities = 69/316 (21%), Positives = 118/316 (37%), Gaps = 103/316 (32%)

Query: 362 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSV-ASAKDWPKNLEVQFRK 420
           L   EL+         IG    G V  G    G ++AV  +   A+A+         F  
Sbjct: 190 LNMKELK-----LLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDATAQA--------FLA 235

Query: 421 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GM 476
           +   ++++ H N V L+G   EE+     +V EY   G+L +++  +    L        
Sbjct: 236 EASVMTQLRHSNLVQLLGVIVEEKGGL-YIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKF 294

Query: 477 RLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSDLSFWNEI 527
            L +   M Y LE           N+     VH         ++ED  AK+SD  F    
Sbjct: 295 SLDVCEAMEY-LEGN---------NF-----VHRDLAARNVLVSEDNVAKVSD--FG--- 334

Query: 528 AMAEMAATSKKLS------SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGS 574
            + + A++++         +AP A      S +S+V++FG+LL+E+ + GR+PY      
Sbjct: 335 -LTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPY------ 387

Query: 575 LEDWAADYLSGVQPLQQFVDPTLSSFD-EEQLE-------------TLGELIKSCVRADP 620
                               P +   D   ++E              + +++K+C   D 
Sbjct: 388 --------------------PRIPLKDVVPRVEKGYKMDAPDGCPPAVYDVMKNCWHLDA 427

Query: 621 EKRPTMRDIAAILREI 636
             RPT   +   L  I
Sbjct: 428 ATRPTFLQLREQLEHI 443

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 88.1 bits (219), Expect = 2e-19
 Identities = 66/309 (21%), Positives = 119/309 (38%), Gaps = 70/309 (22%)

Query: 358 GVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQ 417
           G P   + E+E       + +G    G VY+G       + VA   V + K+    +E +
Sbjct: 1   GSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVW-KKYSLTVA---VKTLKEDTMEVE-E 55

Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW--- 474
           F K+   + ++ H N V L+G C  E PF   ++ E+   G L +++     + +     
Sbjct: 56  FLKEAAVMKEIKHPNLVQLLGVCTREPPF--YIITEFMTYGNLLDYLRECNRQEVSAVVL 113

Query: 475 -GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSDLSFW 524
             M  +I+  M Y LE           N+     +H         + E++  K++D    
Sbjct: 114 LYMATQISSAMEY-LEKK---------NF-----IHRDLAARNCLVGENHLVKVADFGLS 158

Query: 525 NEIAMAEMAATSK-KLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNG 573
             +      A +  K     +AP +      S++S+V+ FGVLL+E+ T G  PY     
Sbjct: 159 RLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY----- 213

Query: 574 SLEDWAADYLSGVQPLQQFVD------PTLSSFDEEQLETLGELIKSCVRADPEKRPTMR 627
                    +   Q  +          P          E + EL+++C + +P  RP+  
Sbjct: 214 -------PGIDLSQVYELLEKDYRMERPEGCP------EKVYELMRACWQWNPSDRPSFA 260

Query: 628 DIAAILREI 636
           +I      +
Sbjct: 261 EIHQAFETM 269

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 87.6 bits (218), Expect = 2e-19
 Identities = 69/316 (21%), Positives = 119/316 (37%), Gaps = 103/316 (32%)

Query: 362 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASV-SVASAKDWPKNLEVQFRK 420
           L   EL+         IG    G V  G    G ++AV  + + A+A+         F  
Sbjct: 18  LNMKELK-----LLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDATAQA--------FLA 63

Query: 421 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GM 476
           +   ++++ H N V L+G   EE+     +V EY   G+L +++  +    L        
Sbjct: 64  EASVMTQLRHSNLVQLLGVIVEEKGGL-YIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKF 122

Query: 477 RLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSDLSFWNEI 527
            L +   M Y LE           N+     VH         ++ED  AK+SD  F    
Sbjct: 123 SLDVCEAMEY-LEGN---------NF-----VHRDLAARNVLVSEDNVAKVSD--F---- 161

Query: 528 AMAEMAATSKKLS------SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGS 574
            + + A++++         +AP A      S +S+V++FG+LL+E+ + GR+PY      
Sbjct: 162 GLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPY------ 215

Query: 575 LEDWAADYLSGVQPLQQFVDPTLSSFD-EEQLE-------------TLGELIKSCVRADP 620
                               P +   D   ++E              + E++K+C   D 
Sbjct: 216 --------------------PRIPLKDVVPRVEKGYKMDAPDGCPPAVYEVMKNCWHLDA 255

Query: 621 EKRPTMRDIAAILREI 636
             RP+   +   L  I
Sbjct: 256 AMRPSFLQLREQLEHI 271

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 88.1 bits (219), Expect = 2e-19
 Identities = 65/296 (21%), Positives = 113/296 (38%), Gaps = 78/296 (26%)

Query: 377 VIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 435
            +GS   GTV KG      V   VA V +   +     L+ +   + + + ++++   V 
Sbjct: 24  ELGSGNFGTVKKGYYQMKKVVKTVA-VKILKNEANDPALKDELLAEANVMQQLDNPYIVR 82

Query: 436 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD----WGMRLRIAMGMAYCLEHM 491
           +IG C E E +  M+V E A  G L +  +++++ H+       +  +++MGM Y LE  
Sbjct: 83  MIGIC-EAESW--MLVMEMAELGPLNK--YLQQNRHVKDKNIIELVHQVSMGMKY-LEES 136

Query: 492 HQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--LSFWNEIAMAEMAATSKKLS 540
                    N+     VH         L   + AK+SD  LS    +   E    ++   
Sbjct: 137 ---------NF-----VHRDLAARNVLLVTQHYAKISDFGLS--KALRADENYYKAQTHG 180

Query: 541 ------SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 587
                  AP        S +S+V++FGVL++E  + G+ PY              + G +
Sbjct: 181 KWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPY------------RGMKGSE 228

Query: 588 PLQQFVD-------PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
                ++       P            + +L+  C   D E RP    +   LR  
Sbjct: 229 VTAM-LEKGERMGCPAGCP------REMYDLMNLCWTYDVENRPGFAAVELRLRNY 277

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 90.7 bits (225), Expect = 3e-19
 Identities = 75/338 (22%), Positives = 123/338 (36%), Gaps = 97/338 (28%)

Query: 344 ATGLSGQLQKAFVTGVPKLKRS-----ELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIA 398
           A GL  +L     T  P+ +       E+          +G    G V+ GT +    +A
Sbjct: 236 ADGLCHRLTTVCPTSKPQTQGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVA 295

Query: 399 VASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNG 458
           + ++   +           F ++   + K+ H+  V L      EEP    +V EY   G
Sbjct: 296 IKTLKPGTMS------PEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPI--YIVTEYMSKG 346

Query: 459 TLFEHIHIKESEHLDW----GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH----- 509
           +L + +  +  ++L       M  +IA GMAY +E M         NY     VH     
Sbjct: 347 SLLDFLKGETGKYLRLPQLVDMAAQIASGMAY-VERM---------NY-----VHRDLRA 391

Query: 510 ----LTEDYAAKLSD--LS------------------FWNEIAMAEMAATSKKLSSAPSA 545
               + E+   K++D  L+                   W     A  AA   + +     
Sbjct: 392 ANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKW----TAPEAALYGRFTIK--- 444

Query: 546 SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVD------PTLS 598
              S+V++FG+LL E+ T GR+PY              +   + L Q         P   
Sbjct: 445 ---SDVWSFGILLTELTTKGRVPY------------PGMVNREVLDQVERGYRMPCPPEC 489

Query: 599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
                  E+L +L+  C R +PE+RPT   + A L + 
Sbjct: 490 P------ESLHDLMCQCWRKEPEERPTFEYLQAFLEDY 521

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 90.1 bits (224), Expect = 3e-19
 Identities = 58/312 (18%), Positives = 107/312 (34%), Gaps = 94/312 (30%)

Query: 366 ELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTL 425
           E+          +G+   G V+  T +   ++AV ++   S           F  + + +
Sbjct: 184 EIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMS------VEAFLAEANVM 237

Query: 426 SKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRLRIA 481
             + H   V L      +EP    ++ E+   G+L + +   E              +IA
Sbjct: 238 KTLQHDKLVKLHAVV-TKEPI--YIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIA 294

Query: 482 MGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--LS-------- 522
            GMA+ +E           NY     +H         ++     K++D  L+        
Sbjct: 295 EGMAF-IEQR---------NY-----IHRDLRAANILVSASLVCKIADFGLARVIEDNEY 339

Query: 523 ----------FWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVD 571
                      W     A  A      +        S+V++FG+LL E+VT GR+PY   
Sbjct: 340 TAREGAKFPIKW----TAPEAINFGSFTIK------SDVWSFGILLMEIVTYGRIPY--- 386

Query: 572 NGSLEDWAADYLSGVQPLQQFVD-------PTLSSFDEEQLETLGELIKSCVRADPEKRP 624
                      +S  + ++  ++       P          E L  ++  C +  PE+RP
Sbjct: 387 ---------PGMSNPEVIRA-LERGYRMPRPENCP------EELYNIMMRCWKNRPEERP 430

Query: 625 TMRDIAAILREI 636
           T   I ++L + 
Sbjct: 431 TFEYIQSVLDDF 442

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 86.5 bits (215), Expect = 7e-19
 Identities = 61/346 (17%), Positives = 121/346 (34%), Gaps = 120/346 (34%)

Query: 359 VPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVA--SAKDWPKNLEV 416
           V  +KR ++          +G    G V+       +      + VA  + KD       
Sbjct: 9   VQHIKRRDIV-----LKRELGEGAFGKVFLAEC-YNLSPTKDKMLVAVKALKDPTLAARK 62

Query: 417 QFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTL--------------FE 462
            F+++ + L+ + H++ V   G C + +P   +MVFEY  +G L               +
Sbjct: 63  DFQREAELLTNLQHEHIVKFYGVCGDGDPL--IMVFEYMKHGDLNKFLRAHGPDAMILVD 120

Query: 463 HIHIKESEHLDW----GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH--------- 509
               +    L       +  +IA GM Y L          + ++     VH         
Sbjct: 121 GQPRQAKGELGLSQMLHIASQIASGMVY-LA---------SQHF-----VHRDLATRNCL 165

Query: 510 LTEDYAAKLSDLSF-----------------------WNEIAMAEMAATSKKLSSAPSAS 546
           +  +   K+ D  F                       W    M   +   +K ++     
Sbjct: 166 VGANLLVKIGD--FGMSRDVYSTDYYRVGGHTMLPIRW----MPPESIMYRKFTT----- 214

Query: 547 LESNVYNFGVLLFEMVT-GRLPY----------LVDNGSLEDWAADYLSGVQPLQQFVDP 595
            ES+V++FGV+L+E+ T G+ P+           +  G +             L++   P
Sbjct: 215 -ESDVWSFGVILWEIFTYGKQPWFQLSNTEVIECITQGRV-------------LER---P 257

Query: 596 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP 641
            +        + + +++  C + +P++R  +++I  IL  +   TP
Sbjct: 258 RVCP------KEVYDVMLGCWQREPQQRLNIKEIYKILHALGKATP 297

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 87.4 bits (217), Expect = 7e-19
 Identities = 68/301 (22%), Positives = 125/301 (41%), Gaps = 63/301 (20%)

Query: 366 ELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAK-DWPKNLEVQFRKKIDT 424
           E+  +C     VIG+   G VYKG L          V++ + K  + +   V F  +   
Sbjct: 40  EIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGI 99

Query: 425 LSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRLRI 480
           + + +H N + L G   + +P   M++ EY  NG L + +  ++          GM   I
Sbjct: 100 MGQFSHHNIIRLEGVISKYKPM--MIITEYMENGALDKFLR-EKDGEFSVLQLVGMLRGI 156

Query: 481 AMGMAYCLEHMHQLNPPI-----AHNYLNSSAVHLTEDYAAKLSD--LS-FWNEIAMAEM 532
           A GM Y L +M+     +     A N L      +  +   K+SD  LS    +   A  
Sbjct: 157 AAGMKY-LANMNY----VHRDLAARNIL------VNSNLVCKVSDFGLSRVLEDDPEATY 205

Query: 533 AATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADY 582
             +  K+    +AP A      +  S+V++FG++++E++T G  PY        +     
Sbjct: 206 TTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPY-------WEL---- 254

Query: 583 LSGVQPLQQFVDPTLSSFDEEQLE-------TLGELIKSCVRADPEKRPTMRDIAAILRE 635
            S  + ++  ++      D  +L         + +L+  C + +  +RP   DI +IL +
Sbjct: 255 -SNHEVMKA-IN------DGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDK 306

Query: 636 I 636
           +
Sbjct: 307 L 307

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 85.7 bits (213), Expect = 1e-18
 Identities = 65/316 (20%), Positives = 117/316 (37%), Gaps = 82/316 (25%)

Query: 362 LKRSELEAACEDFSNVIGSSPIGTVYKGTL--SNGVEIAVASVSVASAK-DWPKNLEVQF 418
           + R ++       + ++G    G VY+G      G +I VA   V + K D   + + +F
Sbjct: 9   IAREDVV-----LNRILGEGFFGEVYEGVYTNHKGEKINVA---VKTCKKDCTLDNKEKF 60

Query: 419 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD----W 474
             +   +  ++H + V LIG  EEE P    ++ E  P G L  ++  +    L      
Sbjct: 61  MSEAVIMKNLDHPHIVKLIGIIEEE-PT--WIIMELYPYGELGHYLE-RNKNSLKVLTLV 116

Query: 475 GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--LSF 523
              L+I   MAY LE         + N      VH         +      KL D  LS 
Sbjct: 117 LYSLQICKAMAY-LE---------SINC-----VHRDIAVRNILVASPECVKLGDFGLSR 161

Query: 524 WNEIAMAEMAATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNG 573
           + E       A+  +L     +P +      +  S+V+ F V ++E+++ G+ P+     
Sbjct: 162 YIEDE-DYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPF----- 215

Query: 574 SLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE-------TLGELIKSCVRADPEKRPTM 626
               +    L     +   ++        ++L         L  L+  C   DP  RP  
Sbjct: 216 ----FW---LENKDVIGV-LE------KGDRLPKPDLCPPVLYTLMTRCWDYDPSDRPRF 261

Query: 627 RDIAAILREITGITPD 642
            ++   L ++  +  D
Sbjct: 262 TELVCSLSDVYQMEKD 277

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 85.5 bits (212), Expect = 2e-18
 Identities = 61/280 (21%), Positives = 105/280 (37%), Gaps = 55/280 (19%)

Query: 374 FSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN 432
           F   IG     TVYKG      VE+A   +     +   K+   +F+++ + L  + H N
Sbjct: 30  FDIEIGRGSFKTVYKGLDTETTVEVAWCELQD---RKLTKSERQRFKEEAEMLKGLQHPN 86

Query: 433 FVNLIGFCEEEEPFTRMMVF--EYAPNGTLFEHIHIKESEHLDWGMRLR----IAMGMAY 486
            V      E      + +V   E   +GTL  ++  K  + +   +       I  G+ +
Sbjct: 87  IVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYL--KRFKVMKIKVLRSWCRQILKGLQF 144

Query: 487 CLEHMHQLNPPIAHNYLNSSAVHLT-EDYAAKLSDLSFWNEIAMAEMAATSKKLSS---- 541
               +H   PPI H  L    + +T    + K+ DL       +A +   S   +     
Sbjct: 145 ----LHTRTPPIIHRDLKCDNIFITGPTGSVKIGDL------GLATLKRASFAKAVIGTP 194

Query: 542 ---AP-----SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYL---SGVQP-- 588
              AP           +VY FG+ + EM T   PY       ++ A  Y    SGV+P  
Sbjct: 195 EFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYS----ECQNAAQIYRRVTSGVKPAS 250

Query: 589 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRD 628
             +   P +              I+ C+R + ++R +++D
Sbjct: 251 FDKVAIPEVKEI-----------IEGCIRQNKDERYSIKD 279

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 85.4 bits (212), Expect = 2e-18
 Identities = 59/324 (18%), Positives = 105/324 (32%), Gaps = 90/324 (27%)

Query: 362 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKK 421
            +   L+     F   +G    G+V         +     V+V   +   +     F ++
Sbjct: 7   FEERHLK-----FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFERE 61

Query: 422 IDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD----WGMR 477
           I+ L  + H N V   G C         ++ EY P G+L +++  K  E +D        
Sbjct: 62  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ-KHKERIDHIKLLQYT 120

Query: 478 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--LS---- 522
            +I  GM Y L             Y     +H         +  +   K+ D  L+    
Sbjct: 121 SQICKGMEY-LG---------TKRY-----IHRDLATRNILVENENRVKIGDFGLTKVLP 165

Query: 523 ----------------FWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRL 566
                           FW     A  + T  K S A      S+V++FGV+L+E+ T   
Sbjct: 166 QDKEFFKVKEPGESPIFW----YAPESLTESKFSVA------SDVWSFGVVLYELFT--- 212

Query: 567 PYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD-EEQLET-------------LGELI 612
              ++           + G           +  F   E L+              +  ++
Sbjct: 213 --YIEKSKSPPAEFMRMIGNDK-----QGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIM 265

Query: 613 KSCVRADPEKRPTMRDIAAILREI 636
             C   +  +RP+ RD+A  + +I
Sbjct: 266 TECWNNNVNQRPSFRDLALRVDQI 289

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 85.9 bits (213), Expect = 2e-18
 Identities = 59/324 (18%), Positives = 105/324 (32%), Gaps = 90/324 (27%)

Query: 362 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKK 421
            +   L+     F   +G    G+V         +     V+V   +   +     F ++
Sbjct: 38  FEERHLK-----FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFERE 92

Query: 422 IDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD----WGMR 477
           I+ L  + H N V   G C         ++ EY P G+L +++  K  E +D        
Sbjct: 93  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ-KHKERIDHIKLLQYT 151

Query: 478 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--LS---- 522
            +I  GM Y L             Y     +H         +  +   K+ D  L+    
Sbjct: 152 SQICKGMEY-LG---------TKRY-----IHRDLATRNILVENENRVKIGDFGLTKVLP 196

Query: 523 ----------------FWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRL 566
                           FW     A  + T  K S A      S+V++FGV+L+E+ T   
Sbjct: 197 QDKEYYKVKEPGESPIFW----YAPESLTESKFSVA------SDVWSFGVVLYELFT--- 243

Query: 567 PYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD-EEQLET-------------LGELI 612
              ++           + G           +  F   E L+              +  ++
Sbjct: 244 --YIEKSKSPPAEFMRMIGNDK-----QGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIM 296

Query: 613 KSCVRADPEKRPTMRDIAAILREI 636
             C   +  +RP+ RD+A  + +I
Sbjct: 297 TECWNNNVNQRPSFRDLALRVDQI 320

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 84.2 bits (209), Expect = 3e-18
 Identities = 61/309 (19%), Positives = 117/309 (37%), Gaps = 88/309 (28%)

Query: 366 ELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSV-ASAKDWPKNLEVQFRKKIDT 424
            ++ +   F   IGS   G V+ G   N  ++A+ ++   A +++        F ++ + 
Sbjct: 4   VIDPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEE-------DFIEEAEV 56

Query: 425 LSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW---GMRLRIA 481
           + K++H   V L G C E+ P    +V E+  +G L +++  +          GM L + 
Sbjct: 57  MMKLSHPKLVQLYGVCLEQAPI--CLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVC 114

Query: 482 MGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSDLSFWNEIAMAEM 532
            GMAY LE                  +H         + E+   K+SD      +   + 
Sbjct: 115 EGMAY-LEEA---------CV-----IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY 159

Query: 533 AATSK-KLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAAD 581
            +++  K     ++P        S +S+V++FGVL++E+ + G++PY             
Sbjct: 160 TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPY------------- 206

Query: 582 YLSGVQPLQQFVDPTLSSFD-EEQLE-------------TLGELIKSCVRADPEKRPTMR 627
                           S+ +  E +               + +++  C R  PE RP   
Sbjct: 207 -------------ENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWRERPEDRPAFS 253

Query: 628 DIAAILREI 636
            +   L EI
Sbjct: 254 RLLRQLAEI 262

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 84.2 bits (209), Expect = 3e-18
 Identities = 67/312 (21%), Positives = 121/312 (38%), Gaps = 91/312 (29%)

Query: 362 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSV-ASAKDWPKNLEVQFRK 420
           LKR E+          +GS   G V  G      ++AV  +   + ++D       +F +
Sbjct: 5   LKREEIT-----LLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSED-------EFFQ 52

Query: 421 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GM 476
           +  T+ K++H   V   G C +E P    +V EY  NG L  ++     + L+      M
Sbjct: 53  EAQTMMKLSHPKLVKFYGVCSKEYPI--YIVTEYISNGCLLNYLR-SHGKGLEPSQLLEM 109

Query: 477 RLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSDLSFWNEI 527
              +  GMA+ LE            +     +H         +  D   K+SD  F    
Sbjct: 110 CYDVCEGMAF-LESH---------QF-----IHRDLAARNCLVDRDLCVKVSD--F---- 148

Query: 528 AMA-------EMAATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLV 570
            M         +++   K     SAP        S +S+V+ FG+L++E+ + G++PY  
Sbjct: 149 GMTRYVLDDQYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPY-- 206

Query: 571 DNGSLEDWAADYLSGVQPLQQFVD------PTLSSFDEEQLETLGELIKSCVRADPEKRP 624
                        +  + + +         P L+S      +T+ +++ SC    PEKRP
Sbjct: 207 -------DL---YTNSEVVLKVSQGHRLYRPHLAS------DTIYQIMYSCWHELPEKRP 250

Query: 625 TMRDIAAILREI 636
           T + + + +  +
Sbjct: 251 TFQQLLSSIEPL 262

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 84.6 bits (210), Expect = 3e-18
 Identities = 59/296 (19%), Positives = 106/296 (35%), Gaps = 80/296 (27%)

Query: 378 IGSSPIGTVYKGTL-SNGVEIAVASVSVASAK-DWPKNLEVQFRKKIDTLSKVNHKNFVN 435
           +G    G+V +G       +I VA   +   K    K    +  ++   + ++++   V 
Sbjct: 18  LGCGNFGSVRQGVYRMRKKQIDVA---IKVLKQGTEKADTEEMMREAQIMHQLDNPYIVR 74

Query: 436 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRLRIAMGMAYCLEHM 491
           LIG C + E    M+V E A  G L + +   + E +       +  +++MGM Y LE  
Sbjct: 75  LIGVC-QAEAL--MLVMEMAGGGPLHKFLV-GKREEIPVSNVAELLHQVSMGMKY-LEEK 129

Query: 492 HQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--LSFWNEIAMAEMAATSKKLS 540
                    N+     VH         L   + AK+SD  LS    +   +   T++   
Sbjct: 130 ---------NF-----VHRDLAARNVLLVNRHYAKISDFGLS--KALGADDSYYTARSAG 173

Query: 541 ------SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 587
                  AP        S  S+V+++GV ++E ++ G+ PY              + G +
Sbjct: 174 KWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPY---------KK---MKGPE 221

Query: 588 PLQQFVD-------PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
            +   ++       P            L  L+  C     E RP    +   +R  
Sbjct: 222 VMAF-IEQGKRMECPPECP------PELYALMSDCWIYKWEDRPDFLTVEQRMRAC 270

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 84.2 bits (209), Expect = 4e-18
 Identities = 53/303 (17%), Positives = 114/303 (37%), Gaps = 76/303 (25%)

Query: 366 ELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSV-ASAKDWPKNLEVQFRKKIDT 424
           E++     F   +G+   G V  G      ++A+  +   + ++D       +F ++   
Sbjct: 20  EIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSED-------EFIEEAKV 72

Query: 425 LSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI-----HIKESEHLDWGMRLR 479
           +  ++H+  V L G C ++ P    ++ EY  NG L  ++       +  + L+  M   
Sbjct: 73  MMNLSHEKLVQLYGVCTKQRPI--FIITEYMANGCLLNYLREMRHRFQTQQLLE--MCKD 128

Query: 480 IAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSDLSFWNEIAMA 530
           +   M Y LE            +     +H         + +    K+SD      +   
Sbjct: 129 VCEAMEY-LESK---------QF-----LHRDLAARNCLVNDQGVVKVSDFGLSRYVLDD 173

Query: 531 E-MAATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWA 579
           E  ++   K     S P        S +S+++ FGVL++E+ + G++PY           
Sbjct: 174 EYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPY---------ER 224

Query: 580 ADYLSGVQPLQQFVD------PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 633
               +  +  +          P L+S      E +  ++ SC     ++RPT + + + +
Sbjct: 225 ---FTNSETAEHIAQGLRLYRPHLAS------EKVYTIMYSCWHEKADERPTFKILLSNI 275

Query: 634 REI 636
            ++
Sbjct: 276 LDV 278

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 87.2 bits (216), Expect = 5e-18
 Identities = 63/312 (20%), Positives = 114/312 (36%), Gaps = 77/312 (24%)

Query: 360 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTL--SNGVEIAVASVSVASAK-DWPKNLEV 416
           P  +  E++    +    IG    G V++G         +AVA   + + K     ++  
Sbjct: 380 PSTRDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVA---IKTCKNCTSDSVRE 436

Query: 417 QFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW-- 474
           +F ++  T+ + +H + V LIG    E P    ++ E    G L   +       LD   
Sbjct: 437 KFLQEALTMRQFDHPHIVKLIGVI-TENPV--WIIMELCTLGELRSFLQ-VRKFSLDLAS 492

Query: 475 --GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--L 521
                 +++  +AY LE         +  +     VH         ++ +   KL D  L
Sbjct: 493 LILYAYQLSTALAY-LE---------SKRF-----VHRDIAARNVLVSSNDCVKLGDFGL 537

Query: 522 SFWNEIAMAEMAATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVD 571
           S + E       A+  KL     AP +      +  S+V+ FGV ++E++  G  P+   
Sbjct: 538 SRYME-DSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPF--- 593

Query: 572 NGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE-------TLGELIKSCVRADPEKRP 624
                      +     +   ++      + E+L        TL  L+  C   DP +RP
Sbjct: 594 ---------QGVKNNDVI-GRIE------NGERLPMPPNCPPTLYSLMTKCWAYDPSRRP 637

Query: 625 TMRDIAAILREI 636
              ++ A L  I
Sbjct: 638 RFTELKAQLSTI 649

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 84.3 bits (209), Expect = 5e-18
 Identities = 68/334 (20%), Positives = 117/334 (35%), Gaps = 96/334 (28%)

Query: 360 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTL--SNGVEIAVA----SVSVASAKDWPKN 413
            KL+   ++        ++G    G+V +G L   +G  + VA     +  +S ++  + 
Sbjct: 24  NKLEDVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEE- 82

Query: 414 LEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR---MMVFEYAPNGTLFE----HIHI 466
               F  +   +   +H N + L+G C E         M++  +   G L          
Sbjct: 83  ----FLSEAACMKDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLE 138

Query: 467 KESEHLDW----GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTED 513
              +H+         + IA+GM Y L            N+     +H         L +D
Sbjct: 139 TGPKHIPLQTLLKFMVDIALGMEY-LS---------NRNF-----LHRDLAARNCMLRDD 183

Query: 514 YAAKLSDLSF-----------------------WNEIAMAEMAATSKKLSSAPSASLESN 550
               ++D  F                       W    +A  +   +  +S      +S+
Sbjct: 184 MTVCVAD--FGLSKKIYSGDYYRQGRIAKMPVKW----IAIESLADRVYTS------KSD 231

Query: 551 VYNFGVLLFEMVT-GRLPYL-VDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETL 608
           V+ FGV ++E+ T G  PY  V N  +     DYL     L+Q   P          + L
Sbjct: 232 VWAFGVTMWEIATRGMTPYPGVQNHEM----YDYLLHGHRLKQ---PEDCL------DEL 278

Query: 609 GELIKSCVRADPEKRPTMRDIAAILREITGITPD 642
            E++ SC R DP  RPT   +   L ++    PD
Sbjct: 279 YEIMYSCWRTDPLDRPTFSVLRLQLEKLLESLPD 312

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 83.9 bits (208), Expect = 6e-18
 Identities = 75/323 (23%), Positives = 125/323 (38%), Gaps = 69/323 (21%)

Query: 345 TGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTL--SNGVEIAVASV 402
           + L+ +L +A    V       +      F+ VIG    G VY GTL  ++G +I  A  
Sbjct: 5   SALNPELVQAVQHVVIGPSSLIVH-----FNEVIGRGHFGCVYHGTLLDNDGKKIHCA-- 57

Query: 403 SVASAKDWPKNLEVQ-FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLF 461
            V S        EV  F  +   +   +H N ++L+G C   E  + ++V  Y  +G L 
Sbjct: 58  -VKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEG-SPLVVLPYMKHGDLR 115

Query: 462 EHIHIKESEHLDW----GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH-------- 509
             I   E+ +       G  L++A GM Y L                   VH        
Sbjct: 116 NFIR-NETHNPTVKDLIGFGLQVAKGMKY-LASKK--------------FVHRDLAARNC 159

Query: 510 -LTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS-------APSA------SLESNVYNFG 555
            L E +  K++D     ++   E  +   K  +       A  +      + +S+V++FG
Sbjct: 160 MLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFG 219

Query: 556 VLLFEMVT-GRLPYL-VDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIK 613
           VLL+E++T G  PY  V+   +      YL   + L Q   P          + L E++ 
Sbjct: 220 VLLWELMTRGAPPYPDVNTFDI----TVYLLQGRRLLQ---PEYCP------DPLYEVML 266

Query: 614 SCVRADPEKRPTMRDIAAILREI 636
            C     E RP+  ++ + +  I
Sbjct: 267 KCWHPKAEMRPSFSELVSRISAI 289

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 84.7 bits (210), Expect = 6e-18
 Identities = 62/342 (18%), Positives = 126/342 (36%), Gaps = 111/342 (32%)

Query: 359 VPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGV----EIAVASVSVASAKDWPKNL 414
           V  +KR ++          +G    G V+     N +    ++ VA   V + K+  ++ 
Sbjct: 35  VHHIKRRDIV-----LKWELGEGAFGKVFLAECHNLLPEQDKMLVA---VKALKEASESA 86

Query: 415 EVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHL 472
              F+++ + L+ + H++ V   G C E  P   +MVFEY  +G L   +  H  +++ L
Sbjct: 87  RQDFQREAELLTMLQHQHIVRFFGVCTEGRPL--LMVFEYMRHGDLNRFLRSHGPDAKLL 144

Query: 473 DWG---------------MRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH-------- 509
             G               +  ++A GM Y L            ++     VH        
Sbjct: 145 AGGEDVAPGPLGLGQLLAVASQVAAGMVY-LA---------GLHF-----VHRDLATRNC 189

Query: 510 -LTEDYAAKLSDLSFWNEIA-----------------MAEMAATSKKLSSAPSASLESNV 551
            + +    K+ D     +I                  M   +   +K ++      ES+V
Sbjct: 190 LVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTT------ESDV 243

Query: 552 YNFGVLLFEMVT-GRLPY----------LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF 600
           ++FGV+L+E+ T G+ P+           +  G               L++   P     
Sbjct: 244 WSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGRE-------------LER---PRACP- 286

Query: 601 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPD 642
                  +  +++ C + +P++R +++D+ A L+ +    P 
Sbjct: 287 -----PEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAPPV 323

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 86.2 bits (213), Expect = 9e-18
 Identities = 63/317 (19%), Positives = 106/317 (33%), Gaps = 84/317 (26%)

Query: 359 VPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAK-DWPKNLEV 416
           +   K              +G    G+V +G       +I VA   +   K    K    
Sbjct: 325 LKDKKLFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVA---IKVLKQGTEKADTE 381

Query: 417 QFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW-- 474
           +  ++   + ++++   V LIG C+ E     M+V E A  G L + +   + E +    
Sbjct: 382 EMMREAQIMHQLDNPYIVRLIGVCQAEAL---MLVMEMAGGGPLHKFLV-GKREEIPVSN 437

Query: 475 --GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--L 521
              +  +++MGM Y LE           N+     VH         L   + AK+SD  L
Sbjct: 438 VAELLHQVSMGMKY-LEEK---------NF-----VHRNLAARNVLLVNRHYAKISDFGL 482

Query: 522 SFWNEIAMAEMAATSKKLS----SAPSA------SLESNVYNFGVLLFEMVT-GRLPY-- 568
           S       +   A S         AP        S  S+V+++GV ++E ++ G+ PY  
Sbjct: 483 SKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKK 542

Query: 569 --------LVDNGS-LEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRAD 619
                    ++ G  +E           P              E    L  L+  C    
Sbjct: 543 MKGPEVMAFIEQGKRME----------CP-------------PECPPELYALMSDCWIYK 579

Query: 620 PEKRPTMRDIAAILREI 636
            E RP    +   +R  
Sbjct: 580 WEDRPDFLTVEQRMRAC 596

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 82.6 bits (205), Expect = 1e-17
 Identities = 62/314 (19%), Positives = 113/314 (35%), Gaps = 98/314 (31%)

Query: 366 ELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSV-ASAKDWPKNLEVQFRKKIDT 424
           E+          +G+   G V+ G  +   ++AV S+   + + D        F  + + 
Sbjct: 9   EVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPD-------AFLAEANL 61

Query: 425 LSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRLRI 480
           + ++ H+  V L      +EP    ++ EY  NG+L + +       L       M  +I
Sbjct: 62  MKQLQHQRLVRLYAVV-TQEPI--YIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQI 118

Query: 481 AMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSDLSF-------- 523
           A GMA+ +E           NY     +H         +++  + K++D  F        
Sbjct: 119 AEGMAF-IEER---------NY-----IHRDLRAANILVSDTLSCKIAD--FGLARLIED 161

Query: 524 --------------WNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPY 568
                         W     A  A      +        S+V++FG+LL E+VT GR+PY
Sbjct: 162 NEYTAREGAKFPIKW----TAPEAINYGTFTIK------SDVWSFGILLTEIVTHGRIPY 211

Query: 569 LVDNGSLEDWAADYLSGVQPLQQFVD------PTLSSFDEEQLETLGELIKSCVRADPEK 622
                         ++  + +Q          P          E L +L++ C +  PE 
Sbjct: 212 ------------PGMTNPEVIQNLERGYRMVRPDNCP------EELYQLMRLCWKERPED 253

Query: 623 RPTMRDIAAILREI 636
           RPT   + ++L + 
Sbjct: 254 RPTFDYLRSVLEDF 267

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 82.7 bits (205), Expect = 2e-17
 Identities = 65/303 (21%), Positives = 111/303 (36%), Gaps = 68/303 (22%)

Query: 366 ELEAACEDFSNVIGSSPIGTVYKGTL--SNGVEIAVASVSVASAK-DWPKNLEVQFRKKI 422
           E+EA+      +IGS   G V  G L      ++ VA   + + K  + +     F  + 
Sbjct: 45  EIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVA---IKALKAGYTERQRRDFLSEA 101

Query: 423 DTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRL 478
             + + +H N + L G          M+V EY  NG+L   +              GM  
Sbjct: 102 SIMGQFDHPNIIRLEGVVTRGRLA--MIVTEYMENGSLDTFLR-THDGQFTIMQLVGMLR 158

Query: 479 RIAMGMAYCLEHMHQLNPPI-----AHNYLNSSAVHLTEDYAAKLSD--LS-FWNEIAMA 530
            +  GM Y L  +      +     A N L      +  +   K+SD  LS    +   A
Sbjct: 159 GVGAGMRY-LSDLGY----VHRDLAARNVL------VDSNLVCKVSDFGLSRVLEDDPDA 207

Query: 531 EMAATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAA 580
               T  K+    +AP A      S  S+V++FGV+++E++  G  PY        +   
Sbjct: 208 AYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPY-------WNM-- 258

Query: 581 DYLSGVQPLQQFVDPTLSSFDEEQL-------ETLGELIKSCVRADPEKRPTMRDIAAIL 633
              +    +   V+      +  +L         L +L+  C   D  +RP    I ++L
Sbjct: 259 ---TNRDVISS-VE------EGYRLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVL 308

Query: 634 REI 636
             +
Sbjct: 309 DAL 311

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 83.6 bits (207), Expect = 2e-17
 Identities = 69/303 (22%), Positives = 118/303 (38%), Gaps = 68/303 (22%)

Query: 366 ELEAACEDFSNVIGSSPIGTVYKGTL--SNGVEIAVASVSVASAK-DWPKNLEVQFRKKI 422
           EL+A       V+G+   G V  G L   +  EI+VA   + + K  + +     F  + 
Sbjct: 41  ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVA---IKTLKVGYTEKQRRDFLGEA 97

Query: 423 DTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRL 478
             + + +H N + L G   + +P   M+V EY  NG+L   +  K           GM  
Sbjct: 98  SIMGQFDHPNIIRLEGVVTKSKPV--MIVTEYMENGSLDSFLR-KHDAQFTVIQLVGMLR 154

Query: 479 RIAMGMAYCLEHMHQLNPPI-----AHNYLNSSAVHLTEDYAAKLSD--LS-FWNEIAMA 530
            IA GM Y L  M      +     A N L      +  +   K+SD  L     +   A
Sbjct: 155 GIASGMKY-LSDMGY----VHRDLAARNIL------INSNLVCKVSDFGLGRVLEDDPEA 203

Query: 531 EMAATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAA 580
                  K+    ++P A      +  S+V+++G++L+E+++ G  PY        +   
Sbjct: 204 AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPY-------WEM-- 254

Query: 581 DYLSGVQPLQQFVDPTLSSFDEEQL-------ETLGELIKSCVRADPEKRPTMRDIAAIL 633
              S    ++  VD      +  +L         L +L+  C + D   RP    I +IL
Sbjct: 255 ---SNQDVIKA-VD------EGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSIL 304

Query: 634 REI 636
            ++
Sbjct: 305 DKL 307

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 82.3 bits (204), Expect = 2e-17
 Identities = 63/302 (20%), Positives = 107/302 (35%), Gaps = 80/302 (26%)

Query: 374 FSNVIGSSPIGTVYKGTL--SNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNH 430
              VIG    G VY G         I  A   + S     +  +V+ F ++   +  +NH
Sbjct: 25  SDRVIGKGHFGVVYHGEYIDQAQNRIQCA---IKSLSRITEMQQVEAFLREGLLMRGLNH 81

Query: 431 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDW----GMRLRIAMGMAY 486
            N + LIG     E     ++  Y  +G L + I      +          L++A GM Y
Sbjct: 82  PNVLALIGIMLPPEG-LPHVLLPYMCHGDLLQFIR-SPQRNPTVKDLISFGLQVARGMEY 139

Query: 487 CLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSDLSFWNEIAMAEMAATSK 537
            L             +     VH         L E +  K++D     +I   E  +  +
Sbjct: 140 -LA---------EQKF-----VHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQ 184

Query: 538 KLSS-------APSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYL 583
              +       A  +      + +S+V++FGVLL+E++T G  PY               
Sbjct: 185 HRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPY--------------- 229

Query: 584 SGVQPLQ--QFVD-------PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR 634
             + P     F+        P          ++L ++++ C  ADP  RPT R +   + 
Sbjct: 230 RHIDPFDLTHFLAQGRRLPQPEYCP------DSLYQVMQQCWEADPAVRPTFRVLVGEVE 283

Query: 635 EI 636
           +I
Sbjct: 284 QI 285

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 82.3 bits (204), Expect = 3e-17
 Identities = 67/321 (20%), Positives = 117/321 (36%), Gaps = 88/321 (27%)

Query: 374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVA--SAKDWPKNLEVQ-FRKKIDTLSKV-N 429
           F   +G+   G V + T   G+  + A+++VA    K      E +    ++  LS + N
Sbjct: 27  FGKTLGAGAFGKVVEATA-YGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGN 85

Query: 430 HKNFVNLIGFCEEEEPFTRMMVFEYAPNGTL----------FEHIHIKESEHLDWGMRLR 479
           H N VNL+G C    P   +++ EY   G L          F       +   D  + L 
Sbjct: 86  HMNIVNLLGACTIGGPT--LVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALD 143

Query: 480 ----------IAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSF 523
                     +A GMA+ L   +       H      N L      LT     K+ D   
Sbjct: 144 LEDLLSFSYQVAKGMAF-LASKN-----CIHRDLAARNIL------LTHGRITKICDFGL 191

Query: 524 WNEIAMAE--MAATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVD 571
             +I      +   + +L     AP +      + ES+V+++G+ L+E+ + G  PY   
Sbjct: 192 ARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPY--- 248

Query: 572 NGSLEDWAADYLSGVQPLQQFVD----------PTLSSFDEEQLETLGELIKSCVRADPE 621
                        G+    +F            P  +         + +++K+C  ADP 
Sbjct: 249 ------------PGMPVDSKFYKMIKEGFRMLSPEHAP------AEMYDIMKTCWDADPL 290

Query: 622 KRPTMRDIAAILREITGITPD 642
           KRPT + I  ++ +    + +
Sbjct: 291 KRPTFKQIVQLIEKQISESTN 311

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 82.5 bits (204), Expect = 4e-17
 Identities = 77/336 (22%), Positives = 130/336 (38%), Gaps = 73/336 (21%)

Query: 334 CNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTL-- 391
               +TV    + L+ +L +A    V       +      F+ VIG    G VY GTL  
Sbjct: 58  FQGANTVHIDLSALNPELVQAVQHVVIGPSSLIVH-----FNEVIGRGHFGCVYHGTLLD 112

Query: 392 SNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM 450
           ++G +I  A   V S        EV  F  +   +   +H N ++L+G C   E  + ++
Sbjct: 113 NDGKKIHCA---VKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEG-SPLV 168

Query: 451 VFEYAPNGTLFEHIHIKESEHLDW----GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSS 506
           V  Y  +G L   I   E+ +       G  L++A GM + L                  
Sbjct: 169 VLPYMKHGDLRNFIR-NETHNPTVKDLIGFGLQVAKGMKF-LASKK-------------- 212

Query: 507 AVH---------LTEDYAAKLSD--LSFWNEIAMAEMAATSKKLSS-------APSA--- 545
            VH         L E +  K++D  L+   ++   E  +   K  +       A  +   
Sbjct: 213 FVHRDLAARNCMLDEKFTVKVADFGLA--RDMYDKEFDSVHNKTGAKLPVKWMALESLQT 270

Query: 546 ---SLESNVYNFGVLLFEMVT-GRLPYL-VDNGSLEDWAADYLSGVQPLQQFVDPTLSSF 600
              + +S+V++FGVLL+E++T G  PY  V+   +      YL   + L Q   P     
Sbjct: 271 QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDI----TVYLLQGRRLLQ---PEYCP- 322

Query: 601 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
                + L E++  C     E RP+  ++ + +  I
Sbjct: 323 -----DPLYEVMLKCWHPKAEMRPSFSELVSRISAI 353

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 81.6 bits (202), Expect = 4e-17
 Identities = 64/343 (18%), Positives = 120/343 (34%), Gaps = 104/343 (30%)

Query: 346 GLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTL--SNGVEIAVA--- 400
           G+S +L+        KL+   +         ++G    G+V +  L   +G  + VA   
Sbjct: 6   GISDELK-------EKLEDVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKM 58

Query: 401 -SVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR----MMVFEYA 455
               + ++ D  +     F ++   + + +H +   L+G         R    M++  + 
Sbjct: 59  LKADIIASSDIEE-----FLREAACMKEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFM 113

Query: 456 PNGTLFE----HIHIKESEHLDW----GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSA 507
            +G L          +   +L         + IA GM Y L          + N+     
Sbjct: 114 KHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEY-LS---------SRNF----- 158

Query: 508 VH---------LTEDYAAKLSDLSF-----------------------WNEIAMAEMAAT 535
           +H         L ED    ++D  F                       W    +A  +  
Sbjct: 159 IHRDLAARNCMLAEDMTVCVAD--FGLSRKIYSGDYYRQGCASKLPVKW----LALESLA 212

Query: 536 SKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYL-VDNGSLEDWAADYLSGVQPLQQFV 593
               +        S+V+ FGV ++E++T G+ PY  ++N  +     +YL G   L+Q  
Sbjct: 213 DNLYTV------HSDVWAFGVTMWEIMTRGQTPYAGIENAEI----YNYLIGGNRLKQ-- 260

Query: 594 DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
            P          E + +L+  C  ADP++RP+   +   L  I
Sbjct: 261 -PPECM------EEVYDLMYQCWSADPKQRPSFTCLRMELENI 296

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 80.8 bits (200), Expect = 8e-17
 Identities = 57/305 (18%), Positives = 105/305 (34%), Gaps = 78/305 (25%)

Query: 374 FSNVIGSSPIGTVYKGTLSN----GVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKV 428
            S  +G    G VY+G          E  VA   + +  +     E   F  +   + + 
Sbjct: 29  MSRELGQGSFGMVYEGVAKGVVKDEPETRVA---IKTVNEAASMRERIEFLNEASVMKEF 85

Query: 429 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHLDWGMRLR------- 479
           N  + V L+G   + +P   +++ E    G L  ++        +               
Sbjct: 86  NCHHVVRLLGVVSQGQPT--LVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQM 143

Query: 480 ---IAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF------------- 523
              IA GMAY L           H  L +    + ED+  K+ D  F             
Sbjct: 144 AGEIADGMAY-LNANK-----FVHRDLAARNCMVAEDFTVKIGD--FGMTRDIYETDYYR 195

Query: 524 ----------WNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYL-VD 571
                     W    M+  +      ++       S+V++FGV+L+E+ T    PY  + 
Sbjct: 196 KGGKGLLPVRW----MSPESLKDGVFTT------YSDVWSFGVVLWEIATLAEQPYQGLS 245

Query: 572 NGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA 631
           N  +      ++     L +   P          + L EL++ C + +P+ RP+  +I +
Sbjct: 246 NEQV----LRFVMEGGLLDK---PDNCP------DMLFELMRMCWQYNPKMRPSFLEIIS 292

Query: 632 ILREI 636
            ++E 
Sbjct: 293 SIKEE 297

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 80.4 bits (199), Expect = 8e-17
 Identities = 61/309 (19%), Positives = 111/309 (35%), Gaps = 80/309 (25%)

Query: 362 LKRSELEAACEDFSNVIGSSPIGTVYKGTL--SNGVEIAVASVSVASAK-DWPKNLEVQF 418
           ++R  +E         IG    G V++G         +AVA   + + K     ++  +F
Sbjct: 12  IQRERIE-----LGRCIGEGQFGDVHQGIYMSPENPALAVA---IKTCKNCTSDSVREKF 63

Query: 419 RKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESE----HLDW 474
            ++  T+ + +H + V LIG    E P    ++ E    G L   + +++       L  
Sbjct: 64  LQEALTMRQFDHPHIVKLIGVI-TENPV--WIIMELCTLGELRSFLQVRKYSLDLASL-I 119

Query: 475 GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH---------LTEDYAAKLSD--LSF 523
               +++  +AY LE            +     VH         ++ +   KL D  LS 
Sbjct: 120 LYAYQLSTALAY-LESK---------RF-----VHRDIAARNVLVSSNDCVKLGDFGLSR 164

Query: 524 WNEIAMAEMAATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNG 573
           + E       A+  KL     AP +      +  S+V+ FGV ++E++  G  P+     
Sbjct: 165 YME-DSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPF----- 218

Query: 574 SLEDWAADYLSGVQPLQQFVD------PTLSSFDEEQLETLGELIKSCVRADPEKRPTMR 627
                    +     + +  +      P           TL  L+  C   DP +RP   
Sbjct: 219 ----QG---VKNNDVIGRIENGERLPMPPNCP------PTLYSLMTKCWAYDPSRRPRFT 265

Query: 628 DIAAILREI 636
           ++ A L  I
Sbjct: 266 ELKAQLSTI 274

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 70/330 (21%), Positives = 123/330 (37%), Gaps = 104/330 (31%)

Query: 360 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQ- 417
           P L  ++++     F +VIG    G V K  +   G+ +  A   +   K++    + + 
Sbjct: 20  PVLDWNDIK-----FQDVIGEGNFGQVLKARIKKDGLRMDAA---IKRMKEYASKDDHRD 71

Query: 418 FRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEH------------- 463
           F  +++ L K+ +H N +NL+G CE        +  EYAP+G L +              
Sbjct: 72  FAGELEVLCKLGHHPNIINLLGACEHRGYL--YLAIEYAPHGNLLDFLRKSRVLETDPAF 129

Query: 464 -IHIKESEHLDW----GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH--------- 509
            I    +  L           +A GM Y L                   +H         
Sbjct: 130 AIANSTASTLSSQQLLHFAADVARGMDY-LSQKQF--------------IHRDLAARNIL 174

Query: 510 LTEDYAAKLSD--LSFWNEIAMAEMAATSKKLS---SAPSA------SLESNVYNFGVLL 558
           + E+Y AK++D  LS   E+ + +   T  +L     A  +      +  S+V+++GVLL
Sbjct: 175 VGENYVAKIADFGLSRGQEVYVKK---TMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLL 231

Query: 559 FEMVT-GRLPY----------LVDNGS-LEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE 606
           +E+V+ G  PY           +  G  LE          +P                 +
Sbjct: 232 WEIVSLGGTPYCGMTCAELYEKLPQGYRLE----------KP-------------LNCDD 268

Query: 607 TLGELIKSCVRADPEKRPTMRDIAAILREI 636
            + +L++ C R  P +RP+   I   L  +
Sbjct: 269 EVYDLMRQCWREKPYERPSFAQILVSLNRM 298

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 80.0 bits (198), Expect = 2e-16
 Identities = 64/330 (19%), Positives = 110/330 (33%), Gaps = 113/330 (34%)

Query: 374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVA--SAKDWPKNLEVQ-FRKKIDTLSKV-N 429
           F  V+GS   G V   T   G+     S+ VA    K+   + E +    ++  ++++ +
Sbjct: 49  FGKVLGSGAFGKVMNATA-YGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGS 107

Query: 430 HKNFVNLIGFCEEEEPFTRMMVFEYAPNGTL---------------FEHIHIKESEHLDW 474
           H+N VNL+G C    P    ++FEY   G L                E+ + K  E  + 
Sbjct: 108 HENIVNLLGACTLSGPI--YLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEED 165

Query: 475 GMRLR----------IAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKL 518
              L           +A GM + LE          H      N L      +T     K+
Sbjct: 166 LNVLTFEDLLCFAYQVAKGMEF-LEFKS-----CVHRDLAARNVL------VTHGKVVKI 213

Query: 519 SDLSF---------------------WNEIAMAEMAATSKKLSSAPSASLESNVYNFGVL 557
            D                        W    MA  +      +       +S+V+++G+L
Sbjct: 214 CDFGLARDIMSDSNYVVRGNARLPVKW----MAPESLFEGIYTI------KSDVWSYGIL 263

Query: 558 LFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVD----------PTLSSFDEEQLE 606
           L+E+ + G  PY                G+     F            P  ++      E
Sbjct: 264 LWEIFSLGVNPY---------------PGIPVDANFYKLIQNGFKMDQPFYAT------E 302

Query: 607 TLGELIKSCVRADPEKRPTMRDIAAILREI 636
            +  +++SC   D  KRP+  ++ + L   
Sbjct: 303 EIYIIMQSCWAFDSRKRPSFPNLTSFLGCQ 332

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 79.6 bits (197), Expect = 2e-16
 Identities = 61/310 (19%), Positives = 113/310 (36%), Gaps = 82/310 (26%)

Query: 374 FSNVIGSSPIGTVYKGTLSNGVEI-AVASVSVASAKDWPKNLEVQ-FRKKIDTLSKV-NH 430
           F   +G+   G V + T     +  AV  V+V   K      E +    ++  +S +  H
Sbjct: 50  FGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQH 109

Query: 431 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTL------------FEHIHIKESEHLDWG--- 475
           +N VNL+G C    P   +++ EY   G L             +      +         
Sbjct: 110 ENIVNLLGACTHGGPV--LVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLL 167

Query: 476 -MRLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSFWNEIA 528
               ++A GMA+ L   +       H      N L      LT  + AK+ D     +I 
Sbjct: 168 HFSSQVAQGMAF-LASKN-----CIHRDVAARNVL------LTNGHVAKIGDFGLARDIM 215

Query: 529 MAE--MAATSKKLS---SAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLE 576
                +   + +L     AP +      +++S+V+++G+LL+E+ + G  PY        
Sbjct: 216 NDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPY-------- 267

Query: 577 DWAADYLSGVQPLQQFVD----------PTLSSFDEEQLETLGELIKSCVRADPEKRPTM 626
                   G+    +F            P  +       + +  ++++C   +P  RPT 
Sbjct: 268 -------PGILVNSKFYKLVKDGYQMAQPAFAP------KNIYSIMQACWALEPTHRPTF 314

Query: 627 RDIAAILREI 636
           + I + L+E 
Sbjct: 315 QQICSFLQEQ 324

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 78.4 bits (194), Expect = 3e-16
 Identities = 65/340 (19%), Positives = 109/340 (32%), Gaps = 119/340 (35%)

Query: 359 VPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVA------SAKDWPK 412
           + ++  S +      F   +G    G VYKG L  G      + +VA       A+    
Sbjct: 3   LKEISLSAVR-----FMEELGEDRFGKVYKGHL-FGPAPGEQTQAVAIKTLKDKAEG--- 53

Query: 413 NLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTL------------ 460
            L  +FR +    +++ H N V L+G   +++P    M+F Y  +G L            
Sbjct: 54  PLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPL--SMIFSYCSHGDLHEFLVMRSPHSD 111

Query: 461 --FEHIHIKESEHLDW----GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH----- 509
                        L+      +  +IA GM Y L          +H+      VH     
Sbjct: 112 VGSTDDDRTVKSALEPPDFVHLVAQIAAGMEY-LS---------SHHV-----VHKDLAT 156

Query: 510 ----LTEDYAAKLSDLSF-----------------------WNEIAMAEMAATSKKLSSA 542
               + +    K+SD                          W    MA  A    K S  
Sbjct: 157 RNVLVYDKLNVKISD--LGLFREVYAADYYKLLGNSLLPIRW----MAPEAIMYGKFSID 210

Query: 543 PSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVD------P 595
                 S+++++GV+L+E+ + G  PY               S    ++   +      P
Sbjct: 211 ------SDIWSYGVVLWEVFSYGLQPY---------CG---YSNQDVVEMIRNRQVLPCP 252

Query: 596 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
                       +  L+  C    P +RP  +DI + LR 
Sbjct: 253 DDCP------AWVYALMIECWNEFPSRRPRFKDIHSRLRA 286

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 79.0 bits (195), Expect = 4e-16
 Identities = 59/303 (19%), Positives = 99/303 (32%), Gaps = 60/303 (19%)

Query: 373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 431
             S+++G      V++G     G   A+   +  S     + ++VQ R+  + L K+NHK
Sbjct: 12  LLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFL---RPVDVQMRE-FEVLKKLNHK 67

Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH-------IKESEHLDWGMRLRIAMGM 484
           N V L    EE     ++++ E+ P G+L+  +        + ESE L   +R  +  GM
Sbjct: 68  NIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIV-LR-DVVGGM 125

Query: 485 AYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSK- 537
            +      +    I H      N +             KL+D     E+   E   +   
Sbjct: 126 NHL----RENG--IVHRNIKPGNIMRVIGED--GQSVYKLTDFGAARELEDDEQFVSLYG 177

Query: 538 --------KLSSAPSASLESNVYN-------FGVLLFEMVTGRLPYLVDNGS-------- 574
                       A         Y         GV  +   TG LP+    G         
Sbjct: 178 TEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMY 237

Query: 575 --LEDWAADYLSGVQPLQ------QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTM 626
             +    +  +SGVQ  +          P   S        L  ++ + + AD EK    
Sbjct: 238 KIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGF 297

Query: 627 RDI 629
              
Sbjct: 298 DQF 300

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 78.1 bits (193), Expect = 4e-16
 Identities = 50/275 (18%), Positives = 87/275 (31%), Gaps = 44/275 (16%)

Query: 377 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 435
            IG+   G   K    S+G  +    +   S        +     +++ L ++ H N V 
Sbjct: 13  TIGTGSYGRCQKIRRKSDGKILVWKELDYGSMT--EAEKQ-MLVSEVNLLRELKHPNIVR 69

Query: 436 LIGFCEEEEPFTRMMVFEYAPNGTLFEHI--------HIKESEHLDWGMRLRIAMGMAYC 487
                 +    T  +V EY   G L   I        ++ E   L    +L +A      
Sbjct: 70  YYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLA------ 123

Query: 488 LEHMHQLNPP---IAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKK---LSS 541
           L+  H+ +     + H  L  + V L      KL D      +      A +        
Sbjct: 124 LKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYM 183

Query: 542 APSASLESNVYNF-------GVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 594
           +P   +    YN        G LL+E+     P+     S ++ A     G         
Sbjct: 184 SPEQ-MNRMSYNEKSDIWSLGCLLYELCALMPPF--TAFSQKELAGKIREGK------FR 234

Query: 595 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
                + +E    L E+I   +      RP++ +I
Sbjct: 235 RIPYRYSDE----LNEIITRMLNLKDYHRPSVEEI 265

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 78.2 bits (193), Expect = 1e-15
 Identities = 61/327 (18%), Positives = 106/327 (32%), Gaps = 113/327 (34%)

Query: 374 FSNVIGSSPIGTVYKGT---LSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKV- 428
               +G    G V       +         +V+V   KD     ++     +++ +  + 
Sbjct: 85  LGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIG 144

Query: 429 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTL--------------FEHIHIKESEHLDW 474
            HKN +NL+G C ++ P    ++ EYA  G L                 I+    E + +
Sbjct: 145 KHKNIINLLGACTQDGPL--YVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTF 202

Query: 475 G----MRLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSF- 523
                   ++A GM Y L           H      N L      +TE+   K++D  F 
Sbjct: 203 KDLVSCTYQLARGMEY-LASQK-----CIHRDLAARNVL------VTENNVMKIAD--FG 248

Query: 524 ----------------------WNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEM 561
                                 W    MA  A   +  +       +S+V++FGVL++E+
Sbjct: 249 LARDINNIDYYKKTTNGRLPVKW----MAPEALFDRVYTH------QSDVWSFGVLMWEI 298

Query: 562 VT-GRLPY-----------LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLG 609
            T G  PY           L +   ++          +P                   L 
Sbjct: 299 FTLGGSPYPGIPVEELFKLLKEGHRMD----------KP-------------ANCTNELY 335

Query: 610 ELIKSCVRADPEKRPTMRDIAAILREI 636
            +++ C  A P +RPT + +   L  I
Sbjct: 336 MMMRDCWHAVPSQRPTFKQLVEDLDRI 362

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 67/325 (20%), Positives = 106/325 (32%), Gaps = 124/325 (38%)

Query: 384 GTVYKGTLSN----GVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNHKNFVNLIG 438
           G V K T  +         VA   V   K+     E++    + + L +VNH + + L G
Sbjct: 37  GKVVKATAFHLKGRAGYTTVA---VKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYG 93

Query: 439 FCEEEEPFTRMMVFEYAPNGTL----------------FEHIHIKESEHLDWGMRLR--- 479
            C ++ P   +++ EYA  G+L                        S        L    
Sbjct: 94  ACSQDGPL--LLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGD 151

Query: 480 -------IAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSF--- 523
                  I+ GM Y L  M      + H      N L      + E    K+SD  F   
Sbjct: 152 LISFAWQISQGMQY-LAEMK-----LVHRDLAARNIL------VAEGRKMKISD--FGLS 197

Query: 524 --------------------WNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT 563
                               W    MA  +      ++      +S+V++FGVLL+E+VT
Sbjct: 198 RDVYEEDSYVKRSQGRIPVKW----MAIESLFDHIYTT------QSDVWSFGVLLWEIVT 247

Query: 564 -GRLPY-----------LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGEL 611
            G  PY           L     +E          +P             +   E +  L
Sbjct: 248 LGGNPYPGIPPERLFNLLKTGHRME----------RP-------------DNCSEEMYRL 284

Query: 612 IKSCVRADPEKRPTMRDIAAILREI 636
           +  C + +P+KRP   DI+  L ++
Sbjct: 285 MLQCWKQEPDKRPVFADISKDLEKM 309

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 77.4 bits (191), Expect = 2e-15
 Identities = 58/326 (17%), Positives = 102/326 (31%), Gaps = 106/326 (32%)

Query: 374 FSNVIGSSPIGTVYKGTLSN----GVEIAVASV----SVASAKDWPKNLEVQFRKKIDTL 425
           +   IG    G V++              VA V      ASA       +  F+++   +
Sbjct: 51  YVRDIGEGAFGRVFQARAPGLLPYEPFTMVA-VKMLKEEASADM-----QADFQREAALM 104

Query: 426 SKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMA 485
           ++ ++ N V L+G C   +P    ++FEY   G L E +       +       ++    
Sbjct: 105 AEFDNPNIVKLLGVCAVGKPM--CLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRAR 162

Query: 486 YCLEHMHQLNPP--------IAH--NYLNSSA-VH---------LTEDYAAKLSDLSF-- 523
                   L+          +A    YL+    VH         + E+   K++D  F  
Sbjct: 163 VSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIAD--FGL 220

Query: 524 ---------------------WNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMV 562
                                W    M   +    + ++      ES+V+ +GV+L+E+ 
Sbjct: 221 SRNIYSADYYKADGNDAIPIRW----MPPESIFYNRYTT------ESDVWAYGVVLWEIF 270

Query: 563 T-GRLPY-----------LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGE 610
           + G  PY           + D   L            P             E     L  
Sbjct: 271 SYGLQPYYGMAHEEVIYYVRDGNILA----------CP-------------ENCPLELYN 307

Query: 611 LIKSCVRADPEKRPTMRDIAAILREI 636
           L++ C    P  RP+   I  IL+ +
Sbjct: 308 LMRLCWSKLPADRPSFCSIHRILQRM 333

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 70/284 (24%), Positives = 102/284 (35%), Gaps = 65/284 (22%)

Query: 377 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 435
            IG      VY+   L +GV +A+  V +    D  K       K+ID L ++NH N + 
Sbjct: 39  KIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMD-AKARA-DCIKEIDLLKQLNHPNVIK 96

Query: 436 LIGFCEEEEPFTRMMVFEYAPNGTLFEHI--------HIKESEHLDWGMRLRIAMGMAYC 487
                 E+      +V E A  G L   I         I E     + ++L  A      
Sbjct: 97  YYASFIEDNEL--NIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSA------ 148

Query: 488 LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSAS- 546
           LEHMH     + H  +  + V +T     KL DL               +  SS  +A+ 
Sbjct: 149 LEHMHSRR--VMHRDIKPANVFITATGVVKLGDLGL------------GRFFSSKTTAAH 194

Query: 547 -------------LESNVYNF-------GVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV 586
                        +  N YNF       G LL+EM   + P+  D  +L           
Sbjct: 195 SLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCD 254

Query: 587 QPLQQFVDPTLSS-FDEEQLETLGELIKSCVRADPEKRPTMRDI 629
            P      P  S  + EE    L +L+  C+  DPEKRP +  +
Sbjct: 255 YP------PLPSDHYSEE----LRQLVNMCINPDPEKRPDVTYV 288

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 76.9 bits (190), Expect = 2e-15
 Identities = 61/327 (18%), Positives = 106/327 (32%), Gaps = 113/327 (34%)

Query: 374 FSNVIGSSPIGTVYKGT---LSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKV- 428
               +G    G V       +         +V+V   KD     ++     +++ +  + 
Sbjct: 39  LGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIG 98

Query: 429 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTL--------------FEHIHIKESEHLDW 474
            HKN +NL+G C ++ P    ++ EYA  G L                 I+    E + +
Sbjct: 99  KHKNIINLLGACTQDGPL--YVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTF 156

Query: 475 G----MRLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSF- 523
                   ++A GM Y L           H      N L      +TE+   K++D  F 
Sbjct: 157 KDLVSCTYQLARGMEY-LASQK-----CIHRDLAARNVL------VTENNVMKIAD--FG 202

Query: 524 ----------------------WNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEM 561
                                 W    MA  A   +  +       +S+V++FGVL++E+
Sbjct: 203 LARDINNIDYYKKTTNGRLPVKW----MAPEALFDRVYTH------QSDVWSFGVLMWEI 252

Query: 562 VT-GRLPY-----------LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLG 609
            T G  PY           L +   ++          +P                   L 
Sbjct: 253 FTLGGSPYPGIPVEELFKLLKEGHRMD----------KP-------------ANCTNELY 289

Query: 610 ELIKSCVRADPEKRPTMRDIAAILREI 636
            +++ C  A P +RPT + +   L  I
Sbjct: 290 MMMRDCWHAVPSQRPTFKQLVEDLDRI 316

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 76.6 bits (189), Expect = 4e-15
 Identities = 66/345 (19%), Positives = 113/345 (32%), Gaps = 113/345 (32%)

Query: 384 GTVYKGT---LSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKV-NHKNFVNLIG 438
           G V       L       V  V+V   K      ++     +++ +  +  HKN +NL+G
Sbjct: 83  GQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLG 142

Query: 439 FCEEEEPFTRMMVFEYAPNGTL----------FEHIHIKESEHLDWGMRLR--------I 480
            C ++ P    ++ EYA  G L                  S + +  +  +        +
Sbjct: 143 ACTQDGPL--YVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQV 200

Query: 481 AMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSF----------- 523
           A GM Y L           H      N L      +TED   K++D  F           
Sbjct: 201 ARGMEY-LASKK-----CIHRDLAARNVL------VTEDNVMKIAD--FGLARDIHHIDY 246

Query: 524 ------------WNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPY-- 568
                       W    MA  A   +  +       +S+V++FGVLL+E+ T G  PY  
Sbjct: 247 YKKTTNGRLPVKW----MAPEALFDRIYTH------QSDVWSFGVLLWEIFTLGGSPYPG 296

Query: 569 ---------LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRAD 619
                    L +   ++          +P                   L  +++ C  A 
Sbjct: 297 VPVEELFKLLKEGHRMD----------KP-------------SNCTNELYMMMRDCWHAV 333

Query: 620 PEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIEILSTEAI 664
           P +RPT + +   L  I  +T +  +         + +I +TE +
Sbjct: 334 PSQRPTFKQLVEDLDRIVALTSNQEMGYYHHHHHHDYDIPTTENL 378

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 76.4 bits (188), Expect = 5e-15
 Identities = 61/310 (19%), Positives = 102/310 (32%), Gaps = 60/310 (19%)

Query: 373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 431
             S+++G      V++G     G   A+   +  S     + ++VQ R+  + L K+NHK
Sbjct: 12  LLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFL---RPVDVQMRE-FEVLKKLNHK 67

Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH-------IKESEHLDWGMRLRIAMGM 484
           N V L    EE     ++++ E+ P G+L+  +        + ESE L   +R  +  GM
Sbjct: 68  NIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIV-LR-DVVGGM 125

Query: 485 AYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSK- 537
            +      +    I H      N +             KL+D     E+   E   +   
Sbjct: 126 NHL----RENG--IVHRNIKPGNIMRVIGED--GQSVYKLTDFGAARELEDDEQFVSLYG 177

Query: 538 --------KLSSAPSASLESNVYN-------FGVLLFEMVTGRLPYLVDNGSLEDW---- 578
                       A         Y         GV  +   TG LP+    G   +     
Sbjct: 178 TEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMY 237

Query: 579 ------AADYLSGVQPLQ------QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTM 626
                  +  +SGVQ  +          P   S        L  ++ + + AD EK    
Sbjct: 238 KIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGF 297

Query: 627 RDIAAILREI 636
               A   +I
Sbjct: 298 DQFFAETSDI 307

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 75.0 bits (185), Expect = 9e-15
 Identities = 61/325 (18%), Positives = 106/325 (32%), Gaps = 91/325 (28%)

Query: 359 VPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVA--------SAKDW 410
           + ++ R  +          +G    G VY+G + +G+    + + VA        S +D 
Sbjct: 24  LKEVPRKNIT-----LIRGLGHGAFGEVYEGQV-SGMPNDPSPLQVAVKTLPEVCSEQD- 76

Query: 411 PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI-----H 465
               E+ F  +   +SK NH+N V  IG   +  P    ++ E    G L   +      
Sbjct: 77  ----ELDFLMEALIISKFNHQNIVRCIGVSLQSLPR--FILMELMAGGDLKSFLRETRPR 130

Query: 466 IKESEHLDW----GMRLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYA 515
             +   L       +   IA G  Y LE  H       H      N L +          
Sbjct: 131 PSQPSSLAMLDLLHVARDIACGCQY-LEENH-----FIHRDIAARNCLLTCP---GPGRV 181

Query: 516 AKLSDLSFWNEIAMAE-MAATSKKLS----SAPSA------SLESNVYNFGVLLFEMVT- 563
           AK+ D     +I  A         +       P A      + +++ ++FGVLL+E+ + 
Sbjct: 182 AKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSL 241

Query: 564 GRLPY-----------LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELI 612
           G +PY           +   G ++           P             +     +  ++
Sbjct: 242 GYMPYPSKSNQEVLEFVTSGGRMD----------PP-------------KNCPGPVYRIM 278

Query: 613 KSCVRADPEKRPTMRDIAAILREIT 637
             C +  PE RP    I   +   T
Sbjct: 279 TQCWQHQPEDRPNFAIILERIEYCT 303

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 50/281 (17%), Positives = 106/281 (37%), Gaps = 59/281 (20%)

Query: 379 GSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF--VNL 436
           G S    V++         A+  V++  A          +R +I  L+K+   +   + L
Sbjct: 39  GGS--SKVFQVLNEKKQIYAIKYVNLEEAD---NQTLDSYRNEIAYLNKLQQHSDKIIRL 93

Query: 437 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNP 496
             +   ++     MV E   N  L   +  K+ + +D   R      M   +  +HQ   
Sbjct: 94  YDYEITDQYI--YMVMECG-NIDLNSWL--KKKKSIDPWERKSYWKNMLEAVHTIHQHG- 147

Query: 497 PIAH------NYLNSSAVHLTEDYAAKLSDLSFWNEIA-----------------MA--- 530
            I H      N+L      + +    KL D    N++                  M    
Sbjct: 148 -IVHSDLKPANFL------IVDG-MLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEA 199

Query: 531 --EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP 588
             +M+++ +   S    S +S+V++ G +L+ M  G+ P+      + +  +   + + P
Sbjct: 200 IKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPF----QQIINQISKLHAIIDP 255

Query: 589 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
             +   P +   D      L +++K C++ DP++R ++ ++
Sbjct: 256 NHEIEFPDIPEKD------LQDVLKCCLKRDPKQRISIPEL 290

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 74.2 bits (183), Expect = 1e-14
 Identities = 58/320 (18%), Positives = 102/320 (31%), Gaps = 99/320 (30%)

Query: 374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVA--SAKDWPKNLEVQ-FRKKIDTLSKV-N 429
               +G    G V +     G++      +VA    K+   + E +    ++  L  + +
Sbjct: 31  LGKPLGRGAFGQVIEADA-FGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGH 89

Query: 430 HKNFVNLIGFC-EEEEPFTRMMVFEYAPNGTL----------FEHIHIKESEHLDWGMRL 478
           H N VNL+G C +   P   M++ E+   G L          F    +   +     + L
Sbjct: 90  HLNVVNLLGACTKPGGPL--MVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTL 147

Query: 479 R--------IAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSF- 523
                    +A GM + L           H      N L      L+E    K+ D  F 
Sbjct: 148 EHLICYSFQVAKGMEF-LASRK-----CIHRDLAARNIL------LSEKNVVKICD--FG 193

Query: 524 ----------------------WNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEM 561
                                 W    MA      +  +       +S+V++FGVLL+E+
Sbjct: 194 LARDIYKDPDYVRKGDARLPLKW----MAPETIFDRVYTI------QSDVWSFGVLLWEI 243

Query: 562 VT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ----LETLGELIKSCV 616
            + G  PY                GV+  ++F                   + + +  C 
Sbjct: 244 FSLGASPY---------------PGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCW 288

Query: 617 RADPEKRPTMRDIAAILREI 636
             +P +RPT  ++   L  +
Sbjct: 289 HGEPSQRPTFSELVEHLGNL 308

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 48/308 (15%), Positives = 98/308 (31%), Gaps = 67/308 (21%)

Query: 384 GTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFC- 440
             VY+   + +G E A+  +     +           +++  + K+  H N V       
Sbjct: 42  AFVYEAQDVGSGREYALKRLLSNEEEK-----NRAIIQEVCFMKKLSGHPNIVQFCSAAS 96

Query: 441 ----EEEEPFTRMMVFEYAPNGTLFEHI-------HIKESEHLDWGMRLRIAMGMAYCLE 489
               E +      ++      G L E +        +           L+I       ++
Sbjct: 97  IGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDT------VLKIFYQTCRAVQ 150

Query: 490 HMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLES 549
           HMH+  PPI H  L    + L+     KL D      I+     + S +  +     +  
Sbjct: 151 HMHRQKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITR 210

Query: 550 N-----------------VYN-------FGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG 585
           N                            G +L+ +   + P+  D   L       ++G
Sbjct: 211 NTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPF-EDGAKLR-----IVNG 264

Query: 586 VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG---ITPD 642
                ++  P   +           LI++ ++ +PE+R ++ ++   L+EI     + P 
Sbjct: 265 -----KYSIPPHDTQYTV----FHSLIRAMLQVNPEERLSIAEVVHQLQEIAAARNVNPK 315

Query: 643 GAIPKLSP 650
             I +L  
Sbjct: 316 SPITELLE 323

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 50/276 (18%), Positives = 99/276 (35%), Gaps = 55/276 (19%)

Query: 377 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 435
            IG    G         +G +  +  ++++      +    + R+++  L+ + H N V 
Sbjct: 31  KIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKERE---ESRREVAVLANMKHPNIVQ 87

Query: 436 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLN 495
                EE       +V +Y   G LF+ I+ ++         L   + +   L+H+H   
Sbjct: 88  YRESFEENGSL--YIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRK 145

Query: 496 PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSAS--------- 546
             I H  + S  + LT+D   +L D               ++ L+S    +         
Sbjct: 146 --ILHRDIKSQNIFLTKDGTVQLGDFGI------------ARVLNSTVELARACIGTPYY 191

Query: 547 -----LESNVYNF-------GVLLFEMVTGRLPYLVDNGSLEDWAADYLSG-VQPLQQFV 593
                 E+  YN        G +L+E+ T +  +  + GS+++     +SG   P+    
Sbjct: 192 LSPEICENKPYNNKSDIWALGCVLYELCTLKHAF--EAGSMKNLVLKIISGSFPPVSLHY 249

Query: 594 DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
              L S           L+    + +P  RP++  I
Sbjct: 250 SYDLRS-----------LVSQLFKRNPRDRPSVNSI 274

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 74.0 bits (182), Expect = 3e-14
 Identities = 63/331 (19%), Positives = 104/331 (31%), Gaps = 103/331 (31%)

Query: 359 VPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSN----GVEIAVASV----SVASAKDW 410
           + ++ R  +          +G    G VY+G +S        + VA V     V S +D 
Sbjct: 65  LKEVPRKNIT-----LIRGLGHGAFGEVYEGQVSGMPNDPSPLQVA-VKTLPEVCSEQD- 117

Query: 411 PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI-----H 465
               E+ F  +   +SK NH+N V  IG   +  P    ++ E    G L   +      
Sbjct: 118 ----ELDFLMEALIISKFNHQNIVRCIGVSLQSLPR--FILLELMAGGDLKSFLRETRPR 171

Query: 466 IKESEHLDW----GMRLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYA 515
             +   L       +   IA G  Y LE  H       H      N L +          
Sbjct: 172 PSQPSSLAMLDLLHVARDIACGCQY-LEENH-----FIHRDIAARNCLLTCP---GPGRV 222

Query: 516 AKLSDLSFWNEIA-----------------MAEMAATSKKLSSAPSASLESNVYNFGVLL 558
           AK+ D     +I                  M   A      +S      +++ ++FGVLL
Sbjct: 223 AKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTS------KTDTWSFGVLL 276

Query: 559 FEMVT-GRLPY-----------LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE 606
           +E+ + G +PY           +   G ++           P             +    
Sbjct: 277 WEIFSLGYMPYPSKSNQEVLEFVTSGGRMD----------PP-------------KNCPG 313

Query: 607 TLGELIKSCVRADPEKRPTMRDIAAILREIT 637
            +  ++  C +  PE RP    I   +   T
Sbjct: 314 PVYRIMTQCWQHQPEDRPNFAIILERIEYCT 344

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 75.1 bits (185), Expect = 3e-14
 Identities = 18/144 (12%), Positives = 44/144 (30%), Gaps = 7/144 (4%)

Query: 47  YGALTSWRSCDTENNPCSWFGVEC-SDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILR 105
                +W      +   +  GV   S+G+V  L+L+     G +   I  LT ++ + L 
Sbjct: 54  TQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALG 113

Query: 106 NNSFSG----IIPEGFGELEELEVLDFGHNNFSGPLPNDLGINH--SLTILLLDNNDFVG 159
           ++          P+G       E       ++     +         L    ++++    
Sbjct: 114 SHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQK 173

Query: 160 SLSPEIYKLQVLSESQVDEGQLSS 183
           S+          ++       ++ 
Sbjct: 174 SIKKSSRITLKDTQIGQLSNNITF 197

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.9 bits (182), Expect = 7e-14
 Identities = 27/133 (20%), Positives = 40/133 (30%), Gaps = 7/133 (5%)

Query: 45  DPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAP-EIQSLTHIKSII 103
             Y AL             S  G     G   N N K+L + G      + S   +  + 
Sbjct: 30  KDYLALKEIWD-ALNGKNWSQQGFGTQPGANWNFN-KELDMWGAQPGVSLNSNGRVTGLS 87

Query: 104 LRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP----LPNDLGINHSLTILLLDNNDFVG 159
           L     SG +P+  G+L ELEVL  G +          P  +  N S          +  
Sbjct: 88  LEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQK 147

Query: 160 SLSPEIYKLQVLS 172
           +      +     
Sbjct: 148 TFVDYDPREDFSD 160

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.1 bits (167), Expect = 4e-12
 Identities = 14/106 (13%), Positives = 35/106 (33%), Gaps = 9/106 (8%)

Query: 77  NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF--- 133
           N N +      T   +  +L  +  + + N      +P     L E+++++   N     
Sbjct: 229 NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG 288

Query: 134 -----SGPLPNDLGINHSLTILLLDNNDF-VGSLSPEIYKLQVLSE 173
                      D  +   + I+ +  N+     +   + K++ L  
Sbjct: 289 EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGM 334

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.3 bits (157), Expect = 7e-11
 Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 8/94 (8%)

Query: 87  GTLAPEIQSLTHIKSIILRNNSFSGIIPE-GFGELEELEVLDFGHNNFSGPLPNDLGINH 145
                  ++   + SI LR N  + +  +     L  L  +D  +N+FS   P     + 
Sbjct: 478 KDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSS 536

Query: 146 SLTIL------LLDNNDFVGSLSPEIYKLQVLSE 173
           +L             N  +      I     L++
Sbjct: 537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.5 bits (155), Expect = 1e-10
 Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 11/98 (11%)

Query: 85  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 144
           LEG L P   S   + S+ L  N  + I     G  E++E L F HN     +PN     
Sbjct: 342 LEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAK 399

Query: 145 --HSLTILLLDNNDFVG-------SLSPEIYKLQVLSE 173
               ++ +    N+           L P  +K   +S 
Sbjct: 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.5 bits (155), Expect = 1e-10
 Identities = 20/107 (18%), Positives = 31/107 (28%), Gaps = 13/107 (12%)

Query: 77  NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG- 135
            +   D      L P      ++ SI L NN  S    E F     L  ++   N  +  
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472

Query: 136 ------PLPNDLGINHSLTILLLDNNDFVGSLSPEIY-----KLQVL 171
                     +    + LT + L  N     LS +        L  +
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFNKL-TKLSDDFRATTLPYLVGI 518

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.4 bits (147), Expect = 1e-09
 Identities = 15/100 (15%), Positives = 36/100 (36%), Gaps = 7/100 (7%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSF-SGIIPEGFGELEELEVLDFGHNNFSGP 136
           ++ + L  +     +      I+ I +  N+  +  +     ++++L +L+  +N   G 
Sbjct: 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG- 344

Query: 137 LPNDLGINHSLTILLLDNNDFVGSLSPEIY----KLQVLS 172
                G    L  L L  N     +         +++ LS
Sbjct: 345 KLPAFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLS 383

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.1 bits (141), Expect = 6e-09
 Identities = 13/112 (11%), Positives = 32/112 (28%), Gaps = 20/112 (17%)

Query: 77  NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 136
              +     + ++    +       I   +N+ + +  +    L +L     G++ F   
Sbjct: 163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV-SKAVMRLTKLRQFYMGNSPFVAE 221

Query: 137 LP-----------------NDLGINH--SLTILLLDNNDFVGSLSPEIYKLQ 169
                               DL  ++   LT + + N   +  L   +  L 
Sbjct: 222 NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 15/108 (13%), Positives = 29/108 (26%), Gaps = 13/108 (12%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPE-GFGELEELEVLDFGHNN 132
            L  L L       +          ++++   +N    I        +  +  +DF +N 
Sbjct: 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE 413

Query: 133 FSG-------PLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
                     PL        +++ + L NN               LS 
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 14/120 (11%), Positives = 35/120 (29%), Gaps = 24/120 (20%)

Query: 77  NLNLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSG-------------------II 113
            L    +         ++  +  LT ++   + N+ F                       
Sbjct: 182 TLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE 241

Query: 114 PEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
              +  L++L  ++  +      LP  L     + ++ +  N  + S        Q L++
Sbjct: 242 DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI-SGEQLKDDWQALAD 300

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 13/104 (12%)

Query: 79  NLKDLCLEG----TLAPEIQSLTHIKSIILRN------NSFSGIIPEGFGELEELEVLDF 128
            L  + L          +  + + +K   +RN      N      PEG      L  L  
Sbjct: 514 YLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573

Query: 129 GHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 172
           G N+    +   +  N  +++L + +N  +      +       
Sbjct: 574 GSNDIRK-VNEKITPN--ISVLDIKDNPNISIDLSYVCPYIEAG 614

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.2 bits (123), Expect = 7e-07
 Identities = 10/101 (9%), Positives = 30/101 (29%), Gaps = 3/101 (2%)

Query: 77  NLNLKDLCLEGTLAPEI--QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134
                 +  + T       +  + +    + ++     I +      +   +    NN +
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 135 GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQ 175
             +   +     L    + N+ FV     E ++ +    +Q
Sbjct: 197 F-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 8/79 (10%), Positives = 21/79 (26%), Gaps = 3/79 (3%)

Query: 77  NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 136
             + +           I     +  + + +N     + E       + VLD   N     
Sbjct: 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISI 602

Query: 137 LPNDLGINHSLTILLLDNN 155
             + +       + +L  +
Sbjct: 603 DLSYVCPYIEAGMYMLFYD 621

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 74.1 bits (182), Expect = 3e-14
 Identities = 52/282 (18%), Positives = 108/282 (38%), Gaps = 61/282 (21%)

Query: 379 GSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF--VNL 436
           G S    V++         A+  V++  A    + L+  +R +I  L+K+   +   + L
Sbjct: 67  GGS--SKVFQVLNEKKQIYAIKYVNLEEAD--NQTLD-SYRNEIAYLNKLQQHSDKIIRL 121

Query: 437 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNP 496
             +   ++     MV E   N  L     +K+ + +D   R      M   +  +HQ   
Sbjct: 122 YDYEITDQYI--YMVMECG-NIDLNS--WLKKKKSIDPWERKSYWKNMLEAVHTIHQHG- 175

Query: 497 PIAH------NYLNSSAVHLTEDYAAKLSDLSFWNEIA-----------------MA--- 530
            I H      N+L      + +    KL D    N++                  M    
Sbjct: 176 -IVHSDLKPANFL------IVDG-MLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEA 227

Query: 531 --EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP 588
             +M+++ +   S    S +S+V++ G +L+ M  G+ P+              ++ +  
Sbjct: 228 IKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPF-----------QQIINQISK 276

Query: 589 LQQFVDPTLSSFDEEQLET-LGELIKSCVRADPEKRPTMRDI 629
           L   +DP       +  E  L +++K C++ DP++R ++ ++
Sbjct: 277 LHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPEL 318

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 71.7 bits (176), Expect = 1e-13
 Identities = 50/281 (17%), Positives = 106/281 (37%), Gaps = 59/281 (20%)

Query: 379 GSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF--VNL 436
           G S    V++         A+  V++  A          +R +I  L+K+   +   + L
Sbjct: 20  GGS--SKVFQVLNEKKQIYAIKYVNLEEAD---NQTLDSYRNEIAYLNKLQQHSDKIIRL 74

Query: 437 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNP 496
             +   ++     MV E   N  L     +K+ + +D   R      M   +  +HQ   
Sbjct: 75  YDYEITDQYI--YMVMECG-NIDLNS--WLKKKKSIDPWERKSYWKNMLEAVHTIHQHG- 128

Query: 497 PIAH------NYLNSSAVHLTEDYAAKLSDLSFWNEIA-----------------MA--- 530
            I H      N+L      + +    KL D    N++                  M    
Sbjct: 129 -IVHSDLKPANFL------IVDG-MLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEA 180

Query: 531 --EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP 588
             +M+++ +   S    S +S+V++ G +L+ M  G+ P+      + +  +   + + P
Sbjct: 181 IKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPF----QQIINQISKLHAIIDP 236

Query: 589 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
             +   P +   D      L +++K C++ DP++R ++ ++
Sbjct: 237 NHEIEFPDIPEKD------LQDVLKCCLKRDPKQRISIPEL 271

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 43/281 (15%), Positives = 87/281 (30%), Gaps = 75/281 (26%)

Query: 384 GTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEE 442
           G V+K     +G    +  V   + K           +++  L+K++H N V+  G  + 
Sbjct: 25  GQVFKAKHRIDGKTYVIKRVKYNNEK---------AEREVKALAKLDHVNIVHYNGCWDG 75

Query: 443 EEPFTRM--------------MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCL 488
            +                   +  E+   GTL + I  +  E LD  + L +   +   +
Sbjct: 76  FDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGV 135

Query: 489 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSAS-- 546
           +++H     + +  L  S + L +    K+ D                  L +    +  
Sbjct: 136 DYIHSKK--LINRDLKPSNIFLVDTKQVKIGDFGL------------VTSLKNDGKRTRS 181

Query: 547 -----------LESNVYNF-------GVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP 588
                      + S  Y         G++L E++               +  D   G+  
Sbjct: 182 KGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAF----ETSKFFTDLRDGIIS 237

Query: 589 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
                      FD++       L++  +   PE RP   +I
Sbjct: 238 ---------DIFDKK----EKTLLQKLLSKKPEDRPNTSEI 265

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 71.6 bits (175), Expect = 3e-13
 Identities = 55/301 (18%), Positives = 99/301 (32%), Gaps = 66/301 (21%)

Query: 373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 431
           +    +G+   G V +      G ++A+        +  PKN E    + I  + K+NH 
Sbjct: 17  EMKERLGTGGFGYVLRWIHQDTGEQVAIKQCR---QELSPKNRERWCLE-IQIMKKLNHP 72

Query: 432 NFVNLIGFCEEEEPFTRM----MVFEYAPNGTLFEHIHIKESEHLDWGMR-------LR- 479
           N V+     +  +         +  EY   G L ++++  E+     G++       L  
Sbjct: 73  NVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCC---GLKEGPIRTLLSD 129

Query: 480 IAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMA 533
           I+  + Y     H+    I H      N +        +    K+ DL +  E+   E+ 
Sbjct: 130 ISSALRYL----HENR--IIHRDLKPENIVLQPG---PQRLIHKIIDLGYAKELDQGELC 180

Query: 534 ATSKKLSS----APSASLESNVYN-------FGVLLFEMVTGRLPYLVDN---------- 572
                + +    AP   LE   Y        FG L FE +TG  P+L +           
Sbjct: 181 TEF--VGTLQYLAPEL-LEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVR 237

Query: 573 GSLEDWAADYLSGVQPLQ---QFVDPT-LSSFDEEQLETLGELIKSCVRADPEKRPTMRD 628
               +    Y      ++       P  LS     +LE     ++  +     +R T   
Sbjct: 238 EKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLE---RWLQCMLMWHQRQRGTDPQ 294

Query: 629 I 629
            
Sbjct: 295 N 295

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 33/268 (12%), Positives = 79/268 (29%), Gaps = 73/268 (27%)

Query: 408 KDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM-MVFEYAPNGTLFEHIHI 466
           K   K+    F+ ++  ++ + ++  +   G          + +++EY  N ++ +    
Sbjct: 80  KISIKSKYDDFKNELQIITDIKNEYCLTCEGIITNY---DEVYIIYEYMENDSILKFDEY 136

Query: 467 KESEHLDWGMRLR----------IAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHL 510
                 ++   +           +    +Y     +     I H      N L      +
Sbjct: 137 FFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKN-----ICHRDVKPSNIL------M 185

Query: 511 TEDYAAKLSDLSF-WNEIAMAEMAATS--------------KKLSSAPSA---SLESNVY 552
            ++   KLSD  F  +E  + +    S              +   +       SL     
Sbjct: 186 DKNGRVKLSD--FGESEYMVDKKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSL----- 238

Query: 553 NFGVLLFEMVTGRLPYLVD-----------NGSLEDWAADYLSGVQPLQQFVDPTLSSFD 601
             G+ L+ M    +P+ +              ++E              +    + +   
Sbjct: 239 --GICLYVMFYNVVPFSLKISLVELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLS 296

Query: 602 EEQLETLGELIKSCVRADPEKRPTMRDI 629
            E      + +K  +R +P +R T  D 
Sbjct: 297 NE----DIDFLKLFLRKNPAERITSEDA 320

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 34/283 (12%), Positives = 85/283 (30%), Gaps = 61/283 (21%)

Query: 384 GTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEE 442
           G V++     +    A+  + +   ++  +    +  +++  L+K+ H   V       E
Sbjct: 19  GVVFEAKNKVDDCNYAIKRIRL-PNRELARE---KVMREVKALAKLEHPGIVRYFNAWLE 74

Query: 443 EEPFTRM----------MVFEYAPNGTLFEHIHI-KESEHLDWGMRLRIAMGMAYCLEHM 491
           +    ++          +  +      L + ++     E  +  + L I + +A  +E +
Sbjct: 75  KNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFL 134

Query: 492 HQLNPPIAHNYLNSSAVHLTEDYAAKLSDL----SFWNEIAMAEMAATSKKLSSAPSAS- 546
           H     + H  L  S +  T D   K+ D     +   +     +       +       
Sbjct: 135 HSKG--LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVG 192

Query: 547 ---------LESNVYNF-------GVLLFEMV----TGRLPYLVDNGSLEDWAADYLSGV 586
                    +  N Y+        G++LFE++    T                       
Sbjct: 193 TKLYMSPEQIHGNSYSHKVDIFSLGLILFELLYPFSTQMERVRT---------------- 236

Query: 587 QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
             L    +        ++      +++  +   P +RP   +I
Sbjct: 237 --LTDVRNLKFPPLFTQKYPCEYVMVQDMLSPSPMERPEAINI 277

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 53/302 (17%), Positives = 97/302 (32%), Gaps = 74/302 (24%)

Query: 373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 431
           +   V+G    G V K     +    A+  +     K            ++  L+ +NH+
Sbjct: 9   EEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEK------LSTILSEVMLLASLNHQ 62

Query: 432 NFVNLIGFCEEEEPFTRM-----------MVFEYAPNGTLFEHIH---IKESEHLDWGMR 477
             V       E   F +            +  EY  NGTL++ IH   + +     W + 
Sbjct: 63  YVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLF 122

Query: 478 LRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS------- 522
            +I   ++Y     H     I H      N        + E    K+ D  L+       
Sbjct: 123 RQILEALSYI----HSQG--IIHRDLKPMNIF------IDESRNVKIGDFGLAKNVHRSL 170

Query: 523 FWNEIAMAEMAATSKKLSS--------APSASLESNVYNF-------GVLLFEMVTGRLP 567
              ++    +  +S  L+S        A      +  YN        G++ FEM+     
Sbjct: 171 DILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIYPFST 230

Query: 568 YLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMR 627
            +     L+            L+         FD+ +++   ++I+  +  DP KRP  R
Sbjct: 231 GMERVNILKK-----------LRSVSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGAR 279

Query: 628 DI 629
            +
Sbjct: 280 TL 281

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 67.7 bits (165), Expect = 3e-12
 Identities = 30/304 (9%), Positives = 75/304 (24%), Gaps = 77/304 (25%)

Query: 377 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPK----------------------- 412
           V+G        + T    G    V                                    
Sbjct: 80  VLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQA 139

Query: 413 NLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYA--PNGTLFEHI--HIKE 468
            + ++F    D +     K  + +     +    +R  ++        T  E +  H   
Sbjct: 140 KVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSST 199

Query: 469 SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD-- 520
            + L    RL++ + +   L  +H     + H      + +      L +     L+   
Sbjct: 200 HKSLVHHARLQLTLQVIRLLASLHHYG--LVHTYLRPVDIV------LDQRGGVFLTGFE 251

Query: 521 LSFWN---------------EIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGR 565
               +               E+       +  +       +   + +  G++++ +    
Sbjct: 252 HLVRDGARVVSSVSRGFEPPELEARRATISYHRDRRTL-MTFSFDAWALGLVIYWIWCAD 310

Query: 566 LPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT 625
           LP               L G + + +     +        + +  L++  +R   E R  
Sbjct: 311 LPI---------TKDAALGGSEWIFRSC-KNIP-------QPVRALLEGFLRYPKEDRLL 353

Query: 626 MRDI 629
               
Sbjct: 354 PLQA 357

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 67.4 bits (164), Expect = 3e-12
 Identities = 26/324 (8%), Positives = 77/324 (23%), Gaps = 45/324 (13%)

Query: 344 ATGLSGQLQKAFVTGVPKLKRSELEAACEDFS--NVIGSSPIGTVYKGT-LSNGVEIAVA 400
           A  +       +         S L            +       V+    +    + A+ 
Sbjct: 34  AAMVEAVTATVWPQNAETTVDSLLSQGERKLKLVEPLRVGDRSVVFLVRDVERLEDFALK 93

Query: 401 SVSVASAKDWPKNLEVQ----------------------FRKKIDTLSKVNHKNFVNLIG 438
             ++ +     +   +                            D ++  +   F  L  
Sbjct: 94  VFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVAVQSQPPFAQLSP 153

Query: 439 FCEEEEPFTRMMVFEYAPNGTLFEHI-----HIKESEHLDWGMRLRIAMGMAYCLEHMHQ 493
             ++      +++   A +  L                        +   +     ++  
Sbjct: 154 GQDDYAVANYLLLMPAA-SVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQS 212

Query: 494 LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM--------AEMAATSKKLSSAPSA 545
               + H +     + +  D    L D+S   ++             A      +S  + 
Sbjct: 213 KG--LVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRGPASSVPVTYAPREFLNASTATF 270

Query: 546 SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL 605
           +   N +  G+ ++ +    LP+ +    ++         V         + +   +   
Sbjct: 271 THALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDF-- 328

Query: 606 ETLGELIKSCVRADPEKRPTMRDI 629
             +  LI   +  D  +R    + 
Sbjct: 329 --VKTLIGRFLNFDRRRRLLPLEA 350

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.7 bits (166), Expect = 5e-12
 Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 5/99 (5%)

Query: 78  LNLKDLCLEGTLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 136
           L +     +    P+I   L ++  + L       + P  F  L  L+VL+  HNNF   
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509

Query: 137 LPNDLGINHSLTILLLDNNDFVG----SLSPEIYKLQVL 171
                   +SL +L    N  +      L      L  L
Sbjct: 510 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 548

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.7 bits (166), Expect = 6e-12
 Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 4/99 (4%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 137
           L+L    ++       QSL+H+ ++IL  N    +    F  L  L+ L     N +   
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 138 PNDLGINHSLTILLLDNNDFVGSLSPEI----YKLQVLS 172
              +G   +L  L + +N       PE       L+ L 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.4 bits (165), Expect = 8e-12
 Identities = 18/99 (18%), Positives = 28/99 (28%)

Query: 75  VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134
             NL+L    L    +    S   ++ + L       I    +  L  L  L    N   
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 135 GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
                      SL  L+    +     +  I  L+ L E
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.4 bits (160), Expect = 3e-11
 Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 1/100 (1%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF-SGP 136
           L L    ++         L+ ++ ++    + + +     G L+ L+ L+  HN   S  
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 137 LPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQV 176
           LP       +L  L L +N        ++  L  +    +
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 2/101 (1%)

Query: 74  KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
           + ++L+   L  +G  +      T +K + L  N     +   F  LE+LE LDF H+N 
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNL 408

Query: 134 SGPLPNDLGIN-HSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
                  + ++  +L  L + +     + +     L  L  
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.4 bits (152), Expect = 3e-10
 Identities = 19/98 (19%), Positives = 30/98 (30%), Gaps = 2/98 (2%)

Query: 78  LNLKDLCLEGTLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 136
           L+ +   L+      +  SL ++  + + +          F  L  LEVL    N+F   
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 137 LPND-LGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
              D      +LT L L               L  L  
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.4 bits (147), Expect = 1e-09
 Identities = 15/77 (19%), Positives = 22/77 (28%)

Query: 97  THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNND 156
              K++ L  N    +    F    EL+VLD                   L+ L+L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 157 FVGSLSPEIYKLQVLSE 173
                      L  L +
Sbjct: 88  IQSLALGAFSGLSSLQK 104

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 7/102 (6%)

Query: 77  NLNLKDLCLEGTLAPEIQSLTHIKSIILRNN--SFSGIIPEGFGELEELEVLDFGHNNFS 134
              L     +G  A     L  ++ + L  N  SF G   +       L+ LD   N   
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 135 GPLPNDLGINHSLTILLLDNNDFVGSLSPEIY----KLQVLS 172
             + ++      L  L   +++        ++     L  L 
Sbjct: 387 T-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.3 bits (139), Expect = 1e-08
 Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 12/116 (10%)

Query: 79  NLKDLCL------EGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEV----LDF 128
            LK+L +         L     +LT+++ + L +N    I       L ++ +    LD 
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 129 GHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPE-IYKLQVLSESQVDEGQLSS 183
             N  +   P        L  L L NN    ++    I  L  L   ++  G+  +
Sbjct: 185 SLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 9/103 (8%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGI-IPEGFGELEELEVLDFGHNNFSGP 136
           L   +  L       I  L  +K + + +N      +PE F  L  LE LD   N     
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 137 LPNDLGINHSLTILL----LDNNDFVGSLSPEIYK---LQVLS 172
              DL + H + +L     L  N     + P  +K   L  L+
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLHKLT 206

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 13/98 (13%), Positives = 29/98 (29%), Gaps = 3/98 (3%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEE-LEVLDFGHNNFSGP 136
           LN+             + L  ++ +    N       +        L  L+   N+F+  
Sbjct: 499 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 558

Query: 137 LPNDLGIN--HSLTILLLDNNDFVGSLSPEIYKLQVLS 172
             +   +        LL++      +   +   + VLS
Sbjct: 559 CEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLS 596

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 9/109 (8%)

Query: 74  KVVNLNLKDLCLEGTL-APEIQSLTHIKSIILRNNSFSGI------IPEGFGELEELEVL 126
           +V  L L +   EG L   +  +L  + ++ +     + +      I + F  L  +   
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287

Query: 127 DFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQ 175
                            N     L L N  F    + ++  L+ L+ + 
Sbjct: 288 SLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS 334

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 67.2 bits (164), Expect = 1e-11
 Identities = 45/251 (17%), Positives = 86/251 (34%), Gaps = 48/251 (19%)

Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF---EYAPNGTLFEHIHIKESEHLDW 474
              +   L++V H + V +  F E  +     + +   EY    +L         + L  
Sbjct: 126 AMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKG----QKLPV 181

Query: 475 GMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAA 534
              +   + +   L ++H +   + +N L    + LTE+   KL DL          + +
Sbjct: 182 AEAIAYLLEILPALSYLHSIG--LVYNDLKPENIMLTEE-QLKLIDLG----AVSR-INS 233

Query: 535 TSKKLSS----AP-----SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG 585
                 +    AP       ++ +++Y  G  L  +                    Y+ G
Sbjct: 234 FGYLYGTPGFQAPEIVRTGPTVATDIYTVGRTLAALTLDLPTR----------NGRYVDG 283

Query: 586 VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT----MR-DIAAILREITGIT 640
           +       DP L ++D       G L++  +  DP +R T    M   +  +LRE+    
Sbjct: 284 LPED----DPVLKTYDS-----YGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLREVVAQD 334

Query: 641 PDGAIPKLSPL 651
                P LS +
Sbjct: 335 TGVPRPGLSTI 345

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.2 bits (162), Expect = 2e-11
 Identities = 19/96 (19%), Positives = 34/96 (35%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 137
           L++    +        Q L  +K + L++N  S +  + F     L  L    N+     
Sbjct: 54  LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113

Query: 138 PNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
            N      +L  L L +N    +      +L+ L E
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE 149

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.8 bits (161), Expect = 3e-11
 Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 2/104 (1%)

Query: 61  NPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSL--THIKSIILRNNSFSGIIPEGFG 118
           +      +E ++  + NL+L +  L  T       L  T++  + L  N+ + +  + F 
Sbjct: 210 SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA 269

Query: 119 ELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLS 162
            L +LE     +NN      + L    ++  L L  +    S+S
Sbjct: 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.9 bits (156), Expect = 9e-11
 Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 4/97 (4%)

Query: 79  NLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP 138
            L      G     ++ L+H+  + L +N F  I  E F +L EL+++D G NN +    
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 139 NDLGINHSLTILLLDNNDFVG----SLSPEIYKLQVL 171
           +      SL  L L  N           P    L  L
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL 614

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.9 bits (156), Expect = 1e-10
 Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 3/101 (2%)

Query: 75  VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134
           +  LNL    L    A      + + S+ +  N+ S + PE   +L  L+VL+  HN  S
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 135 GPLPNDLGINHSLTILLLDNNDFVGSLSPEI---YKLQVLS 172
                      +LT L L +N      +        L  L 
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.1 bits (154), Expect = 2e-10
 Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 2/98 (2%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELE--ELEVLDFGHNNFSG 135
           L+L    L  T       L +++ ++L NN    +  E         L+ L+   N    
Sbjct: 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185

Query: 136 PLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
             P        L  L L+N     SL+ ++      + 
Sbjct: 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS 223

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 78  LNLKDLCLEGTLAPEIQ---SLTHIKSIILRNNSFSGIIPEGFGELE--ELEVLDFGHNN 132
           L L ++ L  +L  ++    + T I+++ L N+  S      F  L+   L +LD  +NN
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 133 FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
            +    +       L    L+ N+     S  ++ L  +  
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.3 bits (152), Expect = 3e-10
 Identities = 25/96 (26%), Positives = 36/96 (37%), Gaps = 5/96 (5%)

Query: 79  NLKDLCLEG----TLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
            LK L L+      L+ +     T++  + L +NS   I    F + + L  LD  HN  
Sbjct: 74  MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133

Query: 134 SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQ 169
           S           +L  LLL NN      S E+    
Sbjct: 134 SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.2 bits (149), Expect = 7e-10
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 8/105 (7%)

Query: 78  LNLKDLCLEGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG- 135
           L+L    +   L   E + L +I  I L  N +  +    F  +  L+ L          
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469

Query: 136 -PLPNDLGINHSLTILLLDNNDFVGSLSPEI----YKLQVLSESQ 175
              P+      +LTIL L NN+    ++ ++     KL++L    
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQH 513

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.4 bits (147), Expect = 1e-09
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 13/98 (13%)

Query: 87  GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS--------GPLP 138
            +     Q L ++  + L NN+ + I  +    LE+LE+LD  HNN +        G   
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529

Query: 139 NDLGINHSLTILLLDNNDFVGSLSPEIYK----LQVLS 172
             L     L IL L++N F   +  E++K    L+++ 
Sbjct: 530 YFLKGLSHLHILNLESNGFDE-IPVEVFKDLFELKIID 566

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 1/101 (0%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 137
           LNL+    +       + L  +K I L  N+ + +    F     L+ L+   N  +   
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600

Query: 138 PNDLGIN-HSLTILLLDNNDFVGSLSPEIYKLQVLSESQVD 177
               G    +LT L +  N F  +     + +  ++E+  +
Sbjct: 601 KKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTN 641

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.6 bits (145), Expect = 2e-09
 Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 7/101 (6%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 137
           L+L    ++           ++ ++ L +N  S        +LE L+ L   +N      
Sbjct: 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161

Query: 138 PNDLGI--NHSLTILLLDNNDFVGSLSPE----IYKLQVLS 172
             +L I  N SL  L L +N      SP     I +L  L 
Sbjct: 162 SEELDIFANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLF 201

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.9 bits (143), Expect = 4e-09
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 1/80 (1%)

Query: 95  SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND-LGINHSLTILLLD 153
           + + +  + L  N  S I  + F  L  LEVLD G N     L         ++  + L 
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438

Query: 154 NNDFVGSLSPEIYKLQVLSE 173
            N ++         +  L  
Sbjct: 439 YNKYLQLTRNSFALVPSLQR 458

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.5 bits (142), Expect = 5e-09
 Identities = 18/78 (23%), Positives = 27/78 (34%)

Query: 96  LTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN 155
            T+I  + L +N    +    F    +L  LD G N  S   P        L +L L +N
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 156 DFVGSLSPEIYKLQVLSE 173
           +              L+E
Sbjct: 84  ELSQLSDKTFAFCTNLTE 101

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 1e-08
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 95  SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGI---NHSLTILL 151
           + + +K + L +N      P  F  +  L  L   +      L   L +   N S+  L 
Sbjct: 169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228

Query: 152 LDNNDFVGSLSPEIYKLQVLS 172
           L N+    + +     L+  +
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTN 249

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 1/81 (1%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEG-FGELEELEVLDFGHNNFSGP 136
           LNL    +    +     L H++ + L  N     +    +  LE +  +   +N +   
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445

Query: 137 LPNDLGINHSLTILLLDNNDF 157
             N   +  SL  L+L     
Sbjct: 446 TRNSFALVPSLQRLMLRRVAL 466

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.3 bits (126), Expect = 4e-07
 Identities = 21/99 (21%), Positives = 33/99 (33%), Gaps = 4/99 (4%)

Query: 77  NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS-G 135
             ++    L        Q L  ++ + + +N   GI    F  L  L+ L   ++  S  
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368

Query: 136 PLPNDLG---INHSLTILLLDNNDFVGSLSPEIYKLQVL 171
            L N+      +  L IL L  N      S     L  L
Sbjct: 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.5 bits (124), Expect = 7e-07
 Identities = 16/105 (15%), Positives = 28/105 (26%), Gaps = 9/105 (8%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 137
           L+L    L          L  ++   L  N+   +       L  +  L+   +     +
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312

Query: 138 ---------PNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
                             L  L +++ND  G  S     L  L  
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKY 357

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 9/89 (10%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNN---------SFSGIIPEGFGELEELEVLDF 128
             L+   ++   +  +  L +++ + L+ +         S   I    F  L+ LE L+ 
Sbjct: 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336

Query: 129 GHNNFSGPLPNDLGINHSLTILLLDNNDF 157
             N+  G   N      +L  L L N+  
Sbjct: 337 EDNDIPGIKSNMFTGLINLKYLSLSNSFT 365

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 65.1 bits (158), Expect = 2e-11
 Identities = 27/240 (11%), Positives = 69/240 (28%), Gaps = 46/240 (19%)

Query: 413 NLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYA--PNGTLFEHI--HIKE 468
            + ++F    D +     K  + +     +    +R  ++        T  E +  H   
Sbjct: 145 KVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSST 204

Query: 469 SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA 528
            + L    RL++ + +   L  +H     + H YL    + L +     L+         
Sbjct: 205 HKSLVHHARLQLTLQVIRLLASLHHYG--LVHTYLRPVDIVLDQRGGVFLTGFE----HL 258

Query: 529 MAEMAATSKKLSSAPSA-------------------SLESNVYNFGVLLFEMVTGRLPYL 569
           + + A+    +    +                    +   + +  G+ ++ +    LP  
Sbjct: 259 VRDGASAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPN- 317

Query: 570 VDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
                        L G + + +     +        + +  L++  +R   E R      
Sbjct: 318 --------TDDAALGGSEWIFRS-CKNIP-------QPVRALLEGFLRYPKEDRLLPLQA 361

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 63.8 bits (156), Expect = 3e-11
 Identities = 43/237 (18%), Positives = 94/237 (39%), Gaps = 52/237 (21%)

Query: 413 NLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM-MVFEYAPNGTLFEHIHIKESEH 471
            +E Q R++++  S + H N + L G+  +    TR+ ++ EYAP GT++  +  ++   
Sbjct: 51  GVEHQLRREVEIQSHLRHPNILRLYGYFHDA---TRVYLILEYAPLGTVYREL--QKLSK 105

Query: 472 LDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE 531
            D          +A  L + H     + H  +    + L      K++D  +      + 
Sbjct: 106 FDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIADFGW------SV 157

Query: 532 MAATSKKLSS-------APSASLESNVYNF-------GVLLFEMVTGRLPYLVDNGSLED 577
            A +S++           P   +E  +++        GVL +E + G+ P+  +  + ++
Sbjct: 158 HAPSSRRTDLCGTLDYLPPEM-IEGRMHDEKVDLWSLGVLCYEFLVGKPPF--EANTYQE 214

Query: 578 -----WAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
                   ++         F  P      E       +LI   ++ +P +RP +R++
Sbjct: 215 TYKRISRVEF--------TF--P--DFVTEG----ARDLISRLLKHNPSQRPMLREV 255

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 64.2 bits (157), Expect = 3e-11
 Identities = 48/248 (19%), Positives = 97/248 (39%), Gaps = 59/248 (23%)

Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEE-PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGM 476
           F +++   S+++H+N V++I   EE++  +   +V EY    TL E+I       L    
Sbjct: 58  FEREVHNSSQLSHQNIVSMIDVDEEDDCYY---LVMEYIEGPTLSEYIE--SHGPLSVDT 112

Query: 477 RLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSFWNEIAMA 530
            +     +   ++H H +   I H      N L      +  +   K+ D  F   IA A
Sbjct: 113 AINFTNQILDGIKHAHDMR--IVHRDIKPQNIL------IDSNKTLKIFD--F--GIAKA 160

Query: 531 ----EMAATSKKLSSA----P------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLE 576
                +  T+  L +     P      +    +++Y+ G++L+EM+ G  P+  +     
Sbjct: 161 LSETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGE----- 215

Query: 577 DWAADYLSGV----QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT-----MR 627
                  + V    + +Q  V    +   ++  ++L  +I      D   R         
Sbjct: 216 -------TAVSIAIKHIQDSVPNVTTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKD 268

Query: 628 DIAAILRE 635
           D++++L E
Sbjct: 269 DLSSVLHE 276

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 64.4 bits (157), Expect = 4e-11
 Identities = 55/283 (19%), Positives = 104/283 (36%), Gaps = 54/283 (19%)

Query: 373 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HK 431
              +V+G    GT+    + +  ++AV        K           +++  L + + H 
Sbjct: 27  CPKDVLGHGAEGTIVYRGMFDNRDVAV--------KRILPECFSFADREVQLLRESDEHP 78

Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR--LR-IAMGMAYCL 488
           N +    FC E++   + +  E     TL E++  K+  HL       L+    G+A+  
Sbjct: 79  NVIRY--FCTEKDRQFQYIAIELCA-ATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHL- 134

Query: 489 EHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LSFWNEIAMAEMAATSKKLS 540
              H LN  I H      N L S   +      A +SD  L     +     +  S    
Sbjct: 135 ---HSLN--IVHRDLKPHNILISMP-NAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPG 188

Query: 541 S----AP---------SASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGV 586
           +    AP         + +   ++++ G + + +++ G  P+    G      A+ L G 
Sbjct: 189 TEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPF----GKSLQRQANILLGA 244

Query: 587 QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
             L   + P        +     ELI+  +  DP+KRP+ + +
Sbjct: 245 CSLD-CLHPEKHEDVIAR-----ELIEKMIAMDPQKRPSAKHV 281

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.9 bits (158), Expect = 5e-11
 Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 10/107 (9%)

Query: 77  NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 136
           + N               +L  +  + L N      +P+   +L EL+ L+   N     
Sbjct: 471 DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA 530

Query: 137 ---------LPNDLGINHSLTILLLDNNDFVG-SLSPEIYKLQVLSE 173
                    L +D      + I  +  N+      S  + K+  L  
Sbjct: 531 AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.6 bits (152), Expect = 3e-10
 Identities = 16/140 (11%), Positives = 40/140 (28%), Gaps = 24/140 (17%)

Query: 45  DPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIIL 104
           +      +W   +       W                          ++ +   +  + L
Sbjct: 294 NNTIHSLNW---NFNKELDMWGDQPGV--------------------DLDNNGRVTGLSL 330

Query: 105 RNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPE 164
                 G +P+  G+L EL+VL FG ++ +           +  +     +         
Sbjct: 331 AGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKM 390

Query: 165 -IYKLQVLSESQVDEGQLSS 183
            +   Q L+ S + +  ++ 
Sbjct: 391 FLDYDQRLNLSDLLQDAINR 410

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.9 bits (145), Expect = 2e-09
 Identities = 19/122 (15%), Positives = 40/122 (32%), Gaps = 26/122 (21%)

Query: 78  LNLKDLCLEG------TLAPEIQSLTHIKSIILRNNSFSGI------------------- 112
           ++LKD  +         ++  IQ LT ++ I   N+ F+                     
Sbjct: 423 ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482

Query: 113 IPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 172
               +  L++L  ++  +      LP+ L     L  L +  N  +   +        L+
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS-AAQLKADWTRLA 541

Query: 173 ES 174
           + 
Sbjct: 542 DD 543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 8/91 (8%)

Query: 87  GTLAPEIQSLTHIKSIILRNNSFSGIIPE-GFGELEELEVLDFGHNNFSGPLPNDLGINH 145
             LA +  +   I+   +  N+           ++ +L +LD  HN          G N 
Sbjct: 538 TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--LEAFGTNV 595

Query: 146 SLTILLLDNNDFVGSLSPEIYK----LQVLS 172
            LT L LD N     +  +       ++ L 
Sbjct: 596 KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLG 625

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.0 bits (135), Expect = 3e-08
 Identities = 14/105 (13%), Positives = 30/105 (28%), Gaps = 13/105 (12%)

Query: 79  NLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS---- 134
            +       + + +     +  ++ L  N       E F     +  +   +N  +    
Sbjct: 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE 714

Query: 135 ---GPLPNDLGINHSLTILLLDNNDFVGSLSPEI-----YKLQVL 171
               P   +    + LT + L  N    SLS +        L  +
Sbjct: 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNM 758

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.3 bits (133), Expect = 5e-08
 Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 4/77 (5%)

Query: 91  PEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN--HSLT 148
               +   +  + L  N    I  +     +++E L F HN     +PN       + + 
Sbjct: 589 EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMG 647

Query: 149 ILLLDNNDFVGSLSPEI 165
            +    N   GS    I
Sbjct: 648 SVDFSYNKI-GSEGRNI 663

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.5 bits (131), Expect = 9e-08
 Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 11/107 (10%)

Query: 76  VNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGI-------IPEGFGELEELEVLDF 128
             + L    ++        + + I +IIL NN  + I           +     L  +D 
Sbjct: 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL 735

Query: 129 GHNNFSGPLPNDLGINH--SLTILLLDNNDFVGSLSPEIYKLQVLSE 173
             N  +  L +D        L+ + +  N F  S   +      L  
Sbjct: 736 RFNKLTS-LSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKA 780

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 8/94 (8%), Positives = 24/94 (25%), Gaps = 12/94 (12%)

Query: 92  EIQSLTHIKSIILRNNSFSGIIPEGFGELEE-----LEVLDFGHNNFSGPLPNDLGINHS 146
             +S+  + S+    N            +++        +   +N               
Sbjct: 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP 698

Query: 147 LTILLLDNNDF-------VGSLSPEIYKLQVLSE 173
           ++ ++L NN         +           +L+ 
Sbjct: 699 ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT 732

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.2 bits (125), Expect = 4e-07
 Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 21/108 (19%)

Query: 79  NLKDLCLEG----TLAPEIQSLTHIKSIILR------NNSFSGIIPEGFGELEELEVLDF 128
            L ++ +      +   +  + + +K+  +R       N      P G      L  L  
Sbjct: 754 YLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813

Query: 129 GHNNFSGPLPNDLGINHSLTILLLDNN--------DFVGSLSPEIYKL 168
           G N+    +   L     L IL + +N             +   +Y L
Sbjct: 814 GSNDIRK-VDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVL 858

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.9 bits (114), Expect = 9e-06
 Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 26/121 (21%)

Query: 77  NLNLKDL-CLEGTLAPEIQSLTHIKSIILRNNSFSGI------IPEGFGELEELEVLDFG 129
            LNL DL        PE++ +     I L++     +      I +    L +L+++ F 
Sbjct: 397 RLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFA 456

Query: 130 HNNFSGP-------------------LPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQV 170
           ++ F+                               LT + L N   +  L   +Y L  
Sbjct: 457 NSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516

Query: 171 L 171
           L
Sbjct: 517 L 517

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 10/80 (12%), Positives = 27/80 (33%), Gaps = 4/80 (5%)

Query: 77  NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN-NFSG 135
             + +   +       I +   +  + + +N    +  +      +L +LD   N N S 
Sbjct: 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL---TPQLYILDIADNPNISI 842

Query: 136 PLPNDLGINHSLTILLLDNN 155
            + +      +   +LL + 
Sbjct: 843 DVTSVCPYIEAGMYVLLYDK 862

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 64.0 bits (156), Expect = 5e-11
 Identities = 51/297 (17%), Positives = 98/297 (32%), Gaps = 61/297 (20%)

Query: 373 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHK 431
               ++G    GTV       G  +AV        K    +       +I  L++  +H 
Sbjct: 18  VSEKILGYGSSGTVVFQGSFQGRPVAV--------KRMLIDFCDIALMEIKLLTESDDHP 69

Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR-----LRIAMGMAY 486
           N +    +C E       +  E   N  L + +  K     +  ++     + +   +A 
Sbjct: 70  NVIRY--YCSETTDRFLYIALELC-NLNLQDLVESKNVSDENLKLQKEYNPISLLRQIAS 126

Query: 487 CLEHMHQLNPPIAH------NYL-------NSSAVHLTEDYAAKLSD-----------LS 522
            + H+H L   I H      N L        +      E+    +SD            S
Sbjct: 127 GVAHLHSLK--IIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSS 184

Query: 523 FWNEIA--------MA-EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDN 572
           F   +          A E+   S  L +    +   ++++ G + + +++ G+ P+    
Sbjct: 185 FRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPF---- 240

Query: 573 GSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
           G      ++ + G+  L +       S   E  +    LI   +  DP KRPT   +
Sbjct: 241 GDKYSRESNIIRGIFSLDEMKCLHDRSLIAEATD----LISQMIDHDPLKRPTAMKV 293

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 62.8 bits (153), Expect = 5e-11
 Identities = 38/285 (13%), Positives = 85/285 (29%), Gaps = 49/285 (17%)

Query: 377 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 435
             G  P    ++    +   ++A+  V           L+ +   +   LS+++      
Sbjct: 38  FHGGVPPLQFWQALDTALDRQVALTFVDPQGVLP-DDVLQ-ETLSRTLRLSRIDKPGVAR 95

Query: 436 LIGFCEEEE-PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL 494
           ++             +V E+   G+L E               +R    +A   +  H+ 
Sbjct: 96  VLDVVHTRAGGL---VVAEWIRGGSLQEVAD----TSPSPVGAIRAMQSLAAAADAAHRA 148

Query: 495 NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLESNVYNF 554
              +A +  + S V ++ D    L+  +                    P A+ + ++   
Sbjct: 149 G--VALSIDHPSRVRVSIDGDVVLAYPAT------------------MPDANPQDDIRGI 188

Query: 555 GVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD---PTLSSFDEEQLETLGEL 611
           G  L+ ++  R P            A   SG+ P ++         +  D +    +  +
Sbjct: 189 GASLYALLVNRWPLP---------EAGVRSGLAPAERDTAGQPIEPADIDRDIPFQISAV 239

Query: 612 IKSCVRADPEKRPT------MRDIAAILREITGITPDGAIPKLSP 650
               V+ D   R        M+   A+      + P    P  + 
Sbjct: 240 AARSVQGDGGIRSASTLLNLMQQATAVADRTEVLGPIDEAPVSAA 284

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 63.1 bits (154), Expect = 6e-11
 Identities = 51/229 (22%), Positives = 87/229 (37%), Gaps = 52/229 (22%)

Query: 422 IDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESE--HLDWG 475
           +  +  +NH N V L    E E+     ++ EYA  G +F+++     +KE E       
Sbjct: 65  VRIMKILNHPNIVKLFEVIETEKTL--YLIMEYASGGEVFDYLVAHGRMKEKEARSKFR- 121

Query: 476 MRLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSFWNEIAM 529
              +I   + YC    HQ    I H      N L      L  D   K++D  F NE  +
Sbjct: 122 ---QIVSAVQYC----HQKR--IVHRDLKAENLL------LDADMNIKIADFGFSNEFTV 166

Query: 530 AEMAATS---------KKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAA 580
                           +          E +V++ GV+L+ +V+G LP+  D  +L++   
Sbjct: 167 GGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF--DGQNLKELRE 224

Query: 581 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
             L G   +  ++     +           L+K  +  +P KR T+  I
Sbjct: 225 RVLRGKYRIPFYMSTDCEN-----------LLKRFLVLNPIKRGTLEQI 262

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 62.7 bits (153), Expect = 8e-11
 Identities = 52/261 (19%), Positives = 87/261 (33%), Gaps = 58/261 (22%)

Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM--MVFEYAPNGTLFEHIHIKESEHLDWG 475
           FR++    + +NH   V +    E E P   +  +V EY    TL + +H      +   
Sbjct: 59  FRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVH--TEGPMTPK 116

Query: 476 MRLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSFWNEIAM 529
             + +       L   HQ    I H      N +      ++   A K+ D  F   IA 
Sbjct: 117 RAIEVIADACQALNFSHQNG--IIHRDVKPANIM------ISATNAVKVMD--F--GIAR 164

Query: 530 A------EMAATSKKLSSA----P------SASLESNVYNFGVLLFEMVTGRLPYLVDNG 573
           A       +  T+  + +A    P      S    S+VY+ G +L+E++TG  P+  D  
Sbjct: 165 AIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD-- 222

Query: 574 SLEDWAADYLSGVQ-PLQQFVD--PTLSSFDEEQLETLGELIKSCVRADPEKRPT----- 625
                     S V    Q   +     S+  E     L  ++   +  +PE R       
Sbjct: 223 ----------SPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEM 272

Query: 626 MRDIAAILREITGITPDGAIP 646
             D+  +        P     
Sbjct: 273 RADLVRVHNGEPPEAPKVLTD 293

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 62.5 bits (152), Expect = 1e-10
 Identities = 20/147 (13%), Positives = 45/147 (30%), Gaps = 3/147 (2%)

Query: 373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 431
                IG    G V            A+  ++    +        + + ++  + K++H 
Sbjct: 29  HLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHP 88

Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM 491
           N   L    E+E+     +V E    G L + +++   +         +   +  C E  
Sbjct: 89  NIARLYEVYEDEQYIC--LVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECN 146

Query: 492 HQLNPPIAHNYLNSSAVHLTEDYAAKL 518
            +      H +  S      E   + +
Sbjct: 147 EEAINGSIHGFRESLDFVQREKLISNI 173

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 59/277 (21%), Positives = 106/277 (38%), Gaps = 46/277 (16%)

Query: 373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 431
               V+G    G V        G E AV  +S    K   K  +    +++  L +++H 
Sbjct: 29  KGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQ--KTDKESLLREVQLLKQLDHP 86

Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM 491
           N + L  F E++  F   +V E    G LF+   I   +        RI   +   + +M
Sbjct: 87  NIMKLYEFFEDKGYFY--LVGEVYTGGELFD--EIISRKRFSEVDAARIIRQVLSGITYM 142

Query: 492 HQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMAEMAATSKKLSS 541
           H+    I H      N L  S    ++D   ++ D  LS  F     M +   T+     
Sbjct: 143 HKNK--IVHRDLKPENLLLESK---SKDANIRIIDFGLSTHFEASKKMKDKIGTA--YYI 195

Query: 542 AP-----SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT 596
           AP     +   + +V++ GV+L+ +++G  P+           A+       + + V+  
Sbjct: 196 APEVLHGTYDEKCDVWSTGVILYILLSGCPPF---------NGANE----YDILKKVEKG 242

Query: 597 LSSFDEEQLETLGE----LIKSCVRADPEKRPTMRDI 629
             +F+  Q + + E    LI+  +   P  R + RD 
Sbjct: 243 KYTFELPQWKKVSESAKDLIRKMLTYVPSMRISARDA 279

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.9 bits (152), Expect = 3e-10
 Identities = 83/574 (14%), Positives = 177/574 (30%), Gaps = 156/574 (27%)

Query: 18  ISQSLCLCWSLNDEGLALL-RLRERVVRDPYGAL-TSWRSCDTENNPCSWFGVECSDGKV 75
           +S +L L W+L  +   ++ +  E V+R  Y  L +  ++   + +  +   +E  D ++
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD-RL 119

Query: 76  VNLN--LKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEG---FGE--LEELEVL-D 127
            N N       +       +Q    ++  +L       ++ +G    G+  +  L+V   
Sbjct: 120 YNDNQVFAKYNV-----SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA-LDVCLS 173

Query: 128 FG-HNNFSGPL----------PNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQV 176
           +         +          P  +       +  +D N    S      KL++ S    
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 177 DEGQLSSAAKKEQSCYERSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAPTSSPPPS 236
               L S        YE  +    VL    VQ      N F NL  +IL +  T+     
Sbjct: 234 LRRLLKSKP------YENCLL---VLLN--VQNAKA-WNAF-NLSCKIL-L--TTRFKQV 277

Query: 237 SDAIPPASVG--SSDDTKANETSSDRND------SVSPPKLSNPAPAPAPNQTPTPTPSI 288
           +D +  A+    S D      T  +            P  L        P +  T  P  
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL--------PREVLTTNP-- 327

Query: 289 PIPRPSSSQSHQKSGGSSSKHIAILGGVIGGAILLVATVGIYLCRCNKVSTVKPWATGLS 348
                                              ++ +     R + ++T   W     
Sbjct: 328 ---------------------------------RRLSIIAE-SIR-DGLATWDNWKHVNC 352

Query: 349 GQLQKAFVTGVPKLKRSELEAACEDFS----NV-IGSSPIGTVYKGTLSNGVEIAVASVS 403
            +L     + +  L+ +E     +  S    +  I +  +  ++   + + V + V  + 
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 404 VAS-AKDWPKN-------LEVQFRKKIDTLSKVNHKNFVN----LIGFCEEEEPFTRMMV 451
             S  +  PK        + ++ + K++    + H++ V+       F  ++       +
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYAL-HRSIVDHYNIPKTFDSDD--LIPPYL 469

Query: 452 FEYAPNGTLFEHI--HIKESEH-------------LDW-GMRLRIAMGMAYC-----LEH 490
            +Y      + HI  H+K  EH               +   ++R     A+      L  
Sbjct: 470 DQY-----FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR-HDSTAWNASGSILNT 523

Query: 491 MHQLNPPIAHNYLNSSAVHLTED---YAAKLSDL 521
           + QL       Y      ++ ++   Y   ++ +
Sbjct: 524 LQQLK-----FYKP----YICDNDPKYERLVNAI 548

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 5e-07
 Identities = 60/418 (14%), Positives = 115/418 (27%), Gaps = 152/418 (36%)

Query: 351 LQKAFVTG-----VPKLKRSELEAACEDFSNVIGS-SPIGTVYK--GTL----SNGVEIA 398
            + AFV       V  + +S L    E+  ++I S   +    +   TL       V+  
Sbjct: 25  FEDAFVDNFDCKDVQDMPKSILSK--EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82

Query: 399 VASVSVASAKDW-----------PKNLEVQFRKKIDTLSKVNH---KNFVNLIGFCEEEE 444
           V  V +     +           P  +   + ++ D L   N    K  V+        +
Sbjct: 83  VEEV-LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS------RLQ 135

Query: 445 PFT--RMMVFEYAPNGTLFEHIHIKESEHLDWGM----------------RLRIAMG--- 483
           P+   R  + E  P   +              G+                +++  M    
Sbjct: 136 PYLKLRQALLELRPAKNVLID-----------GVLGSGKTWVALDVCLSYKVQCKMDFKI 184

Query: 484 ----MAYC------LEHMHQLNPPIAHNYLN-----SSAVHLTEDYAAKLSDLSF----- 523
               +  C      LE + +L   I  N+ +     S+         A+L  L       
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 524 ---------WN--------------------EIAMAEMAATSKKLSSAPSASLESNVYNF 554
                     N                    ++     AAT+  +S    +   +     
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 555 GVLL--FEMVTGRLPYLVDNGSLEDWAADYLSGVQPL---------QQFVDPTLSSFDEE 603
            +LL   +     LP  V   +             P          +  +  T  ++   
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTN-------------PRRLSIIAESIRDGLA-TWDNWKHV 350

Query: 604 QLETLGELIKSCVRA-DP-EKRPTMRDIAAILREITGITPDGAIPK--LSPLWWAEIE 657
             + L  +I+S +   +P E R     + ++            IP   LS +W+  I+
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRL-SVFPP------SAHIPTILLSLIWFDVIK 401

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 57/278 (20%), Positives = 102/278 (36%), Gaps = 49/278 (17%)

Query: 373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNH 430
                +GS   G V         VE A+  +     K            +++  L  ++H
Sbjct: 40  QRVKKLGSGAYGEVLLCRDKVTHVERAIKIIR----KTSVSTSSNSKLLEEVAVLKLLDH 95

Query: 431 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEH 490
            N + L  F E++  +   +V E    G LF+   I      +      I   +   + +
Sbjct: 96  PNIMKLYDFFEDKRNYY--LVMECYKGGELFD--EIIHRMKFNEVDAAVIIKQVLSGVTY 151

Query: 491 MHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMAEMAATSKKLS 540
           +H+ N  I H      N L  S     +D   K+ D  LS  F N+  M E   T+    
Sbjct: 152 LHKHN--IVHRDLKPENLLLESK---EKDALIKIVDFGLSAVFENQKKMKERLGTA--YY 204

Query: 541 SAP-----SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP 595
            AP         + +V++ GV+LF ++ G  P+                  Q + + V+ 
Sbjct: 205 IAPEVLRKKYDEKCDVWSIGVILFILLAGYPPF-------------GGQTDQEILRKVEK 251

Query: 596 TLSSFDEEQLETLGE----LIKSCVRADPEKRPTMRDI 629
              +FD  + + + E    LIK  ++ D ++R + +  
Sbjct: 252 GKYTFDSPEWKNVSEGAKDLIKQMLQFDSQRRISAQQA 289

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 59.1 bits (144), Expect = 1e-09
 Identities = 39/238 (16%), Positives = 86/238 (36%), Gaps = 54/238 (22%)

Query: 413 NLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM-MVFEYAPNGTLFEHIHIKESEH 471
            +E Q R++I+  S + H N + +  +  +     R+ ++ E+AP G L++   +++   
Sbjct: 56  GVEHQLRREIEIQSHLRHPNILRMYNYFHDR---KRIYLMLEFAPRGELYK--ELQKHGR 110

Query: 472 LDWGMRLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSFWN 525
            D          +A  L + H+    + H      N L      +      K++D  +  
Sbjct: 111 FDEQRSATFMEELADALHYCHERK--VIHRDIKPENLL------MGYKGELKIADFGW-- 160

Query: 526 EIAMAEMAATSKKLSS-------APSASLESNVYN-------FGVLLFEMVTGRLPYLVD 571
               +  A + ++ +         P   +E   ++        GVL +E + G  P+  D
Sbjct: 161 ----SVHAPSLRRRTMCGTLDYLPPEM-IEGKTHDEKVDLWCAGVLCYEFLVGMPPF--D 213

Query: 572 NGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
           + S  +     ++       F+                 LI   +R  P +R  ++ +
Sbjct: 214 SPSHTETHRRIVNVDLKFPPFLSDGSKD-----------LISKLLRYHPPQRLPLKGV 260

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 59.1 bits (144), Expect = 1e-09
 Identities = 46/281 (16%), Positives = 94/281 (33%), Gaps = 81/281 (28%)

Query: 384 GTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEE 442
              ++ +        A   V  +       +   +   +I     + H++ V   GF E+
Sbjct: 29  AKCFEISDADTKEVFAGKIVPKSLLLK--PHQREKMSMEISIHRSLAHQHVVGFHGFFED 86

Query: 443 EEPFTRM-MVFEYAPNGTLFEHI----HIKESEHLDWGMRLR-----IAMGMAYCLEHMH 492
                 + +V E     +L E       + E E        R     I +G  Y   H +
Sbjct: 87  N---DFVFVVLELCRRRSLLELHKRRKALTEPE-------ARYYLRQIVLGCQYL--HRN 134

Query: 493 QLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS----- 541
           +    + H      N        L ED   K+ D     ++         +K        
Sbjct: 135 R----VIHRDLKLGNLF------LNEDLEVKIGDFGLATKV----EYDGERKKVLCGTPN 180

Query: 542 --AP------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLED-----WAADYLSGVQP 588
             AP        S E +V++ G +++ ++ G+ P+  +   L++        +Y      
Sbjct: 181 YIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPF--ETSCLKETYLRIKKNEY-----S 233

Query: 589 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
           + + ++P  +S           LI+  ++ DP  RPT+ ++
Sbjct: 234 IPKHINPVAAS-----------LIQKMLQTDPTARPTINEL 263

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 57/292 (19%), Positives = 102/292 (34%), Gaps = 67/292 (22%)

Query: 373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVS---VASAKDWPKNLEVQFRKKIDTLSKV 428
             S  +GS   G V          ++A+  +S    A       +  +    +I+ L K+
Sbjct: 138 IMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKL 197

Query: 429 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESE--HLDWGMRLRIAM 482
           NH   + +  F + E+ +   +V E    G LF+ +     +KE+           ++ +
Sbjct: 198 NHPCIIKIKNFFDAEDYY---IVLELMEGGELFDKVVGNKRLKEATCKLY---FY-QMLL 250

Query: 483 GMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LSFWNEIAMAEMAA 534
            + Y     H+    I H      N L SS     ED   K++D   S      + E + 
Sbjct: 251 AVQYL----HENG--IIHRDLKPENVLLSSQ---EEDCLIKITDFGHS----KILGETSL 297

Query: 535 TSKKLSS----APS--ASLESNVYNF-------GVLLFEMVTGRLPYLVDNGSLEDWAAD 581
                 +    AP    S+ +  YN        GV+LF  ++G  P+      +      
Sbjct: 298 MRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVS----- 352

Query: 582 YLSGVQPLQQFVDPTLSSFDEEQLETLGE----LIKSCVRADPEKRPTMRDI 629
                  L+  +     +F  E    + E    L+K  +  DP+ R T  + 
Sbjct: 353 -------LKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEA 397

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 58.7 bits (143), Expect = 1e-09
 Identities = 36/263 (13%), Positives = 79/263 (30%), Gaps = 101/263 (38%)

Query: 413 NLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM-MVFEYAPNGTLFEHIHIKE--- 468
            +  + + ++    ++ H + + L  + E+      + +V E   NG +  ++  +    
Sbjct: 53  GMVQRVQNEVKIHCQLKHPSILELYNYFEDS---NYVYLVLEMCHNGEMNRYLKNRVKPF 109

Query: 469 SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD-- 520
           SE+       +I  GM Y     H     I H      N L      LT +   K++D  
Sbjct: 110 SENEARHFMHQIITGMLYL----HSHG--ILHRDLTLSNLL------LTRNMNIKIADFG 157

Query: 521 LSFWNEIAMAEMAATSKKLSS--------APSASLESNVYNF-------GVLLFEMVTGR 565
           L+        ++    +K  +        +P      + +         G + + ++ GR
Sbjct: 158 LA-------TQLKMPHEKHYTLCGTPNYISPEI-ATRSAHGLESDVWSLGCMFYTLLIGR 209

Query: 566 LPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETL------GE--------- 610
            P                                FD + ++         +         
Sbjct: 210 PP--------------------------------FDTDTVKNTLNKVVLADYEMPSFLSI 237

Query: 611 ----LIKSCVRADPEKRPTMRDI 629
               LI   +R +P  R ++  +
Sbjct: 238 EAKDLIHQLLRRNPADRLSLSSV 260

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 46/284 (16%), Positives = 96/284 (33%), Gaps = 87/284 (30%)

Query: 384 GTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEE 442
              ++ +        A   V  +       +   +   +I     + H++ V   GF E+
Sbjct: 55  AKCFEISDADTKEVFAGKIVPKSLLLK--PHQREKMSMEISIHRSLAHQHVVGFHGFFED 112

Query: 443 EEPFTRM-MVFEYAPNGTLFEHI----HIKESEHLDWGMRLR-----IAMGMAYCLEHMH 492
                 + +V E     +L E       + E E        R     I +G  Y   H +
Sbjct: 113 N---DFVFVVLELCRRRSLLELHKRRKALTEPE-------ARYYLRQIVLGCQYL--HRN 160

Query: 493 QLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LSFWNEIAMAEMAATSKKLSS--- 541
           +    + H      N        L ED   K+ D  L+        ++    ++      
Sbjct: 161 R----VIHRDLKLGNLF------LNEDLEVKIGDFGLA-------TKVEYDGERKKVLCG 203

Query: 542 -----AP------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLED-----WAADYLSG 585
                AP        S E +V++ G +++ ++ G+ P+  +   L++        +Y   
Sbjct: 204 TPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPF--ETSCLKETYLRIKKNEY--- 258

Query: 586 VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
              + + ++P  +S           LI+  ++ DP  RPT+ ++
Sbjct: 259 --SIPKHINPVAAS-----------LIQKMLQTDPTARPTINEL 289

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 58.8 bits (142), Expect = 2e-09
 Identities = 51/347 (14%), Positives = 102/347 (29%), Gaps = 101/347 (29%)

Query: 374 FSNVIGSSPIGTVYKGTLSNGVEIA-VASVSVASAKDWPKNLEVQ-FRKKIDTLSKV-NH 430
               +G    G V +       + A   +V+V   K+   + E +    ++  L  + +H
Sbjct: 26  LGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHH 85

Query: 431 KNFVNLIGFC-EEEEPFTRMMVFEYAPNGTLFEHIH---------------------IKE 468
            N VNL+G C +   P   M++ E+   G L  ++                         
Sbjct: 86  LNVVNLLGACTKPGGPL--MVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVG 143

Query: 469 SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA 528
           +  +D   RL                   ++      +   L +D+      + +  ++A
Sbjct: 144 AIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVA 203

Query: 529 --MAEMAAT---------------------------SKKLSS-----------------A 542
             M  +A+                            ++ +                   A
Sbjct: 204 KGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMA 263

Query: 543 PSASLESNVYN-------FGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 594
           P  ++   VY        FGVLL+E+ + G  PY                GV+  ++F  
Sbjct: 264 PE-TIFDRVYTIQSDVWSFGVLLWEIFSLGASPY---------------PGVKIDEEFCR 307

Query: 595 PTLSSFDEEQ----LETLGELIKSCVRADPEKRPTMRDIAAILREIT 637
                            + + +  C   +P +RPT  ++   L  + 
Sbjct: 308 RLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL 354

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 58.4 bits (141), Expect = 3e-09
 Identities = 35/247 (14%), Positives = 76/247 (30%), Gaps = 37/247 (14%)

Query: 359 VPKLK-RSELEAACEDFS--NVIGSSPIGTVYKGTLSNGVEIAVASVSVA---SAKDWPK 412
           +P +K ++E +   +     +++G      VY+ T  +  +                 P 
Sbjct: 51  LPAIKPKTEFQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQK-FVLKVQKPANPW 109

Query: 413 NLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIK---ES 469
              +   + ++ L       F+        +     ++V E    GTL   I++      
Sbjct: 110 EFYIG-TQLMERLKPSMQHMFMKFYSAHLFQNGS--VLVGELYSYGTLLNAINLYKNTPE 166

Query: 470 EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAH-----------NYLNSSAVHLTEDYAAKL 518
           + +  G+ +  AM M Y +E +H     I H           N                L
Sbjct: 167 KVMPQGLVISFAMRMLYMIEQVHDCE--IIHGDIKPDNFILGNGFLEQDDEDDLSAGLAL 224

Query: 519 SD--LSFWNEIAMAEMAATSKKLSSAPSA---------SLESNVYNFGVLLFEMVTGRLP 567
            D   S   ++       T+K  +S             + + + +     ++ M+ G   
Sbjct: 225 IDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYM 284

Query: 568 YLVDNGS 574
            + + G 
Sbjct: 285 KVKNEGG 291

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 9/105 (8%)

Query: 77  NLNLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEG-FGELEELEVLDFGHN 131
             +L+ L L       ++     L  ++ +  ++++   +     F  LE+L  LD  + 
Sbjct: 375 TNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434

Query: 132 NFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEI----YKLQVLS 172
           N             SL  L +  N F  +    +      L  L 
Sbjct: 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.7 bits (140), Expect = 7e-09
 Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 5/84 (5%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
           NL  L L       ++  +  +L  ++ + + +N+   +    + +L  L  LD   N  
Sbjct: 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533

Query: 134 SGPLPNDLGINHSLTILLLDNNDF 157
                       SL    L NN  
Sbjct: 534 ETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 4/84 (4%)

Query: 93  IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152
              L H+ ++IL  N      P  F  L  LE L       +      +G   +L  L +
Sbjct: 76  WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135

Query: 153 DNNDFVGSLSPEI----YKLQVLS 172
            +N       P        L  + 
Sbjct: 136 AHNFIHSCKLPAYFSNLTNLVHVD 159

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.7 bits (132), Expect = 6e-08
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 1/81 (1%)

Query: 78  LNLKDLCLEGTLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 136
           L +     +      +  + T++  + L       I    F  L  L++L+  HNN    
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512

Query: 137 LPNDLGINHSLTILLLDNNDF 157
             +     +SL+ L    N  
Sbjct: 513 DSSHYNQLYSLSTLDCSFNRI 533

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.7 bits (132), Expect = 7e-08
 Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 7/101 (6%)

Query: 78  LNLKDLCLEGTLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 136
           L+ +   L+         SL  +  + +   +        F  L  L  L    N+F   
Sbjct: 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463

Query: 137 LPND-LGINHSLTILLLDNNDFVGSLSPEI----YKLQVLS 172
             ++      +LT L L        +S  +    ++LQ+L+
Sbjct: 464 TLSNVFANTTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLN 503

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 14/83 (16%), Positives = 24/83 (28%), Gaps = 5/83 (6%)

Query: 94  QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153
            + + ++ + L       I  + +  L  L  L    N      P       SL  L+  
Sbjct: 53  SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112

Query: 154 NNDFVGSLSPEI----YKLQVLS 172
                 SL          L+ L+
Sbjct: 113 ETKLA-SLESFPIGQLITLKKLN 134

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 21/116 (18%), Positives = 34/116 (29%), Gaps = 12/116 (10%)

Query: 79  NLKDLCLEG------TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEEL----EVLDF 128
            LK L +         L     +LT++  + L  N    I       L E       LD 
Sbjct: 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188

Query: 129 GHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPE-IYKLQVLSESQVDEGQLSS 183
             N     + +       L  L L  N    ++    +  L  L   ++  G+   
Sbjct: 189 SLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 16/77 (20%), Positives = 22/77 (28%)

Query: 97  THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNND 156
           +  K+I L  N    +    F    EL+ LD                 H L+ L+L  N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 157 FVGSLSPEIYKLQVLSE 173
                      L  L  
Sbjct: 92  IQSFSPGSFSGLTSLEN 108

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 9e-06
 Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 7/83 (8%)

Query: 95  SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN-HSLTILLLD 153
               ++ + L  N    I+   F  LEEL+ LDF H+           ++   L  L + 
Sbjct: 374 GTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432

Query: 154 NNDFVGSLSPEI----YKLQVLS 172
             +        I      L  L 
Sbjct: 433 YTNT-KIDFDGIFLGLTSLNTLK 454

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 9/88 (10%)

Query: 93  IQSLTHIKSIILRNNSFSGI-IPEGFGELEELEVLDFGHNNFSGPLPNDL----GINHSL 147
           I  L  +K + + +N      +P  F  L  L  +D  +N       NDL          
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183

Query: 148 TILLLDNNDFVGSLSPEI---YKLQVLS 172
             L +  N     +  +     KL  L+
Sbjct: 184 LSLDMSLNPI-DFIQDQAFQGIKLHELT 210

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 23/101 (22%), Positives = 33/101 (32%), Gaps = 7/101 (6%)

Query: 77  NLNLKDLCLEGTLAPEI--QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134
           +   + L +      +     L  +KS+ L  N  S  I      L  L  LD   N  S
Sbjct: 306 HFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALS 363

Query: 135 --GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
             G         +SL  L L  N  +  +S     L+ L  
Sbjct: 364 FSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQH 403

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 52/285 (18%), Positives = 99/285 (34%), Gaps = 52/285 (18%)

Query: 373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVS--------VASAKDWPKNLEVQFRKKID 423
                +GS   G V      +   E A+  +          +      +    +   +I 
Sbjct: 39  FKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEIS 98

Query: 424 TLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMG 483
            L  ++H N + L    E+++ F   +V E+   G LFE   I      D      I   
Sbjct: 99  LLKSLDHPNIIKLFDVFEDKKYFY--LVTEFYEGGELFE--QIINRHKFDECDAANIMKQ 154

Query: 484 MAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMAEMA 533
           +   + ++H+ N  I H      N L  +          K+ D  LS  F  +  + +  
Sbjct: 155 ILSGICYLHKHN--IVHRDIKPENILLENK---NSLLNIKIVDFGLSSFFSKDYKLRDRL 209

Query: 534 ATSKKLSSAP-----SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP 588
            T+     AP       + + +V++ GV+++ ++ G  P+            +     Q 
Sbjct: 210 GTA--YYIAPEVLKKKYNEKCDVWSCGVIMYILLCGYPPF---------GGQND----QD 254

Query: 589 LQQFVDPTLSSFDEEQLETLGE----LIKSCVRADPEKRPTMRDI 629
           + + V+     FD    + + +    LIK  +  D  KR T  + 
Sbjct: 255 IIKKVEKGKYYFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEA 299

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 58.5 bits (142), Expect = 4e-09
 Identities = 61/277 (22%), Positives = 108/277 (38%), Gaps = 47/277 (16%)

Query: 373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 431
           +   ++G    G V K        E AV  ++ ASAK   K+      ++++ L K++H 
Sbjct: 25  NIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAK--NKDTS-TILREVELLKKLDHP 81

Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM 491
           N + L    E+   F   +V E    G LF+   I + +        RI   +   + +M
Sbjct: 82  NIMKLFEILEDSSSFY--IVGELYTGGELFD--EIIKRKRFSEHDAARIIKQVFSGITYM 137

Query: 492 HQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMAEMAATSKKLSS 541
           H+ N  I H      N L  S     +D   K+ D  LS  F     M +   T+     
Sbjct: 138 HKHN--IVHRDLKPENILLESK---EKDCDIKIIDFGLSTCFQQNTKMKDRIGTA--YYI 190

Query: 542 AP-----SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT 596
           AP     +   + +V++ GV+L+ +++G  P+         +  +       + + V+  
Sbjct: 191 APEVLRGTYDEKCDVWSAGVILYILLSGTPPF---------YGKNE----YDILKRVETG 237

Query: 597 LSSFDEEQLETLGE----LIKSCVRADPEKRPTMRDI 629
             +FD  Q  T+ +    LI+  +   P  R T    
Sbjct: 238 KYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQC 274

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 5/99 (5%)

Query: 79  NLKDLCLEGT----LAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134
           NL+ L LE T    L   I +L ++KS+ +RN+  S  +      L +LE LD       
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTAL 242

Query: 135 GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
              P   G    L  L+L +   + +L  +I++L  L +
Sbjct: 243 RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 25/108 (23%), Positives = 36/108 (33%), Gaps = 4/108 (3%)

Query: 79  NLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134
           NLK L +       L P I  L  ++ + LR  +     P  FG    L+ L     +  
Sbjct: 207 NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266

Query: 135 GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182
             LP D+     L  L L     +  L   I +L       V     +
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 23/118 (19%), Positives = 39/118 (33%), Gaps = 15/118 (12%)

Query: 79  NLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134
           +L+ + ++      L   +Q    ++++ L  N     +P     L  L  L        
Sbjct: 105 HLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPEL 163

Query: 135 GPLPNDLGIN---------HSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183
             LP  L             +L  L L+      SL   I  LQ L   ++    LS+
Sbjct: 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA 220

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 50.3 bits (121), Expect = 8e-07
 Identities = 22/127 (17%), Positives = 39/127 (30%), Gaps = 7/127 (5%)

Query: 50  LTSWRS-CDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIIL--RN 106
           L+ W+   + + N       + +             L+   A  ++  T    + L  R+
Sbjct: 32  LSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRS 90

Query: 107 NSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIY 166
                  P+    L  L+ +          LP+ +     L  L L  N    +L   I 
Sbjct: 91  VPLP-QFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLR-ALPASIA 147

Query: 167 KLQVLSE 173
            L  L E
Sbjct: 148 SLNRLRE 154

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 56.9 bits (138), Expect = 6e-09
 Identities = 54/277 (19%), Positives = 88/277 (31%), Gaps = 68/277 (24%)

Query: 385 TVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE 444
            + +            +         P+    Q  ++I  L K++H N V L+   E  +
Sbjct: 50  KLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDHPNVVKLV---EVLD 106

Query: 445 PFTR---MMVFEYAPNGTLFEHI-HIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAH 500
                   MVFE    G + E       SE         +  G+ Y     H     I H
Sbjct: 107 DPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQARFYFQDLIKGIEYL----HYQK--IIH 160

Query: 501 ------NYLNSSAVHLTEDYAAKLSDLSFWNEIA---------------MA-EMAATSKK 538
                 N L      + ED   K++D    NE                 MA E  + ++K
Sbjct: 161 RDIKPSNLL------VGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRK 214

Query: 539 LSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL------QQF 592
           + S        +V+  GV L+  V G+ P++ +              +  L      Q  
Sbjct: 215 IFSGK----ALDVWAMGVTLYCFVFGQCPFMDER-------------IMCLHSKIKSQAL 257

Query: 593 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
             P      E+    L +LI   +  +PE R  + +I
Sbjct: 258 EFPDQPDIAED----LKDLITRMLDKNPESRIVVPEI 290

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 57.1 bits (138), Expect = 7e-09
 Identities = 41/280 (14%), Positives = 77/280 (27%), Gaps = 70/280 (25%)

Query: 376 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV 434
             +G    G V++      G + AV  V +   +           +++   + ++    V
Sbjct: 64  PRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFRV----------EELVACAGLSSPRIV 113

Query: 435 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHLDWGMRLRIAMGMAYC----- 487
            L G   E       M  E    G+L + I       E               Y      
Sbjct: 114 PLYGAVREGPWVNIFM--ELLEGGSLGQLIKQMGCLPEDR-------AL---YYLGQALE 161

Query: 488 -LEHMHQLNPPIAH------NYLNSSAVHLTED-YAAKLSDLSFWNEIAMAEMAATSKKL 539
            LE++H     I H      N L      L+ D   A L D      +    +  +    
Sbjct: 162 GLEYLHTRR--ILHGDVKADNVL------LSSDGSRAALCDFGHALCLQPDGLGKSLLTG 213

Query: 540 SS--------AP------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG 585
                     AP          + ++++   ++  M+ G  P+                 
Sbjct: 214 DYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPW----TQYFRGPLCLKIA 269

Query: 586 VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT 625
            +P      P   +          + I+  +R +P  R +
Sbjct: 270 SEPPPIREIPPSCA------PLTAQAIQEGLRKEPVHRAS 303

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 49/245 (20%), Positives = 83/245 (33%), Gaps = 57/245 (23%)

Query: 412 KNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGT--LFEHI-HIKE 468
            N E   +K+I  L ++ HKN + L+     EE     MV EY   G   + + +   + 
Sbjct: 47  PNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMYMVMEYCVCGMQEMLDSVPEKRF 106

Query: 469 SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLS 522
                 G   ++  G+ Y     H     I H      N L      LT     K+S L 
Sbjct: 107 PVCQAHGYFCQLIDGLEYL----HSQG--IVHKDIKPGNLL------LTTGGTLKISALG 154

Query: 523 FWNEIAMA------------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTG 564
               +                     E+A      S       + ++++ GV L+ + TG
Sbjct: 155 VAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGF-----KVDIWSAGVTLYNITTG 209

Query: 565 RLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRP 624
             P+  +  ++     +   G   +     P LS            L+K  +  +P KR 
Sbjct: 210 LYPF--EGDNIYKLFENIGKGSYAIPGDCGPPLSD-----------LLKGMLEYEPAKRF 256

Query: 625 TMRDI 629
           ++R I
Sbjct: 257 SIRQI 261

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 17/96 (17%), Positives = 31/96 (32%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 137
           L+L    +        QS   + +++L  N    +        + L+ L F     S   
Sbjct: 62  LDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID 121

Query: 138 PNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
              L    +L  L L +N       P+ +  + L  
Sbjct: 122 FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV 157

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 92  EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG-PLPNDLGINHSLTIL 150
           ++++L+H++S+ L  N    +  E F E  +LE+LD            +     H L +L
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430

Query: 151 LLDNNDFVGSLSPEI----YKLQVLS 172
            L ++      S ++      LQ L+
Sbjct: 431 NLSHSLL-DISSEQLFDGLPALQHLN 455

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 12/81 (14%), Positives = 18/81 (22%)

Query: 75  VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134
              L      L          L ++  + L       I  + F     L+ L    N   
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 135 GPLPNDLGINHSLTILLLDNN 155
                 L    +L  L     
Sbjct: 95  FMAETALSGPKALKHLFFIQT 115

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 6/84 (7%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
            L+ L L      ++      SL  +  + L +N  +    E    L+ +  L+   N+ 
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI 535

Query: 134 SGPLPNDLGINHSLTILLLDNNDF 157
           S  LP+ L I      + L  N  
Sbjct: 536 SIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 7/100 (7%)

Query: 79  NLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134
            L++L L       L   +  L+ +K ++L  N F  +          L  L    N   
Sbjct: 279 GLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338

Query: 135 GPL-PNDLGINHSLTILLLDNND--FVGSLSPEIYKLQVL 171
             L    L    +L  L L ++D       + ++  L  L
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL 378

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 22/110 (20%), Positives = 32/110 (29%), Gaps = 8/110 (7%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
            L  L L       +A         +K +       S I        + LE L  G N+ 
Sbjct: 82  RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI 141

Query: 134 SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183
           S            L +L   NN     LS E   +  L ++      L+ 
Sbjct: 142 SSIKLPKGFPTEKLKVLDFQNNAIH-YLSKED--MSSLQQATNLSLNLNG 188

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.6 bits (124), Expect = 7e-07
 Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 12/101 (11%)

Query: 79  NLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG--- 135
            LK    +       Q+L  +K + L ++       + F  L  L+ L+   N+F     
Sbjct: 411 RLKVKDAQSPF----QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466

Query: 136 PLPNDLGINHSLTILLLDNNDFVGSLSPEI----YKLQVLS 172
              N L     L IL+L   D   S+          +  + 
Sbjct: 467 QKTNSLQTLGRLEILVLSFCDLS-SIDQHAFTSLKMMNHVD 506

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 3/82 (3%)

Query: 76  VNLNLKDLCLEG--TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
                +D+  E       E      ++SI L+ + F  I    F     L+ LD    + 
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290

Query: 134 SGPLPNDLGINHSLTILLLDNN 155
           S  LP+ L    +L  L+L  N
Sbjct: 291 SE-LPSGLVGLSTLKKLVLSAN 311

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 13/97 (13%), Positives = 31/97 (31%), Gaps = 3/97 (3%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEV--LDFGHNNFSG 135
           L L    +     P+      +K +  +NN+   +  E    L++     L+   N+ +G
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193

Query: 136 PLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 172
            +      +     L       +  +   +    + S
Sbjct: 194 -IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 13/63 (20%), Positives = 26/63 (41%)

Query: 93  IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152
           +Q+L  ++ ++L     S I    F  L+ +  +D  HN  +      L     + + L 
Sbjct: 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLA 531

Query: 153 DNN 155
            N+
Sbjct: 532 SNH 534

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 3/81 (3%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGII---PEGFGELEELEVLDFGHNNFS 134
           LNL    L+ +       L  ++ + L+ N F             L  LE+L     + S
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489

Query: 135 GPLPNDLGINHSLTILLLDNN 155
               +       +  + L +N
Sbjct: 490 SIDQHAFTSLKMMNHVDLSHN 510

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 16/101 (15%), Positives = 30/101 (29%), Gaps = 5/101 (4%)

Query: 77  NLNLKDLCLEGTLAPEIQ--SLTHIKSIILRNNSFSGIIPEGFGELEE--LEVLDFGHNN 132
           +LN         +   ++  ++  +      +     I P  F  L E  +E ++   + 
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265

Query: 133 FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
           F     N       L  L L        L   +  L  L +
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKK 305

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 3/99 (3%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEG-FGELEELEVLDFGHNN--FS 134
           L L     E        +   +  + ++ N+    +  G    LE L  LD  H++   S
Sbjct: 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365

Query: 135 GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
                 L     L  L L  N+ +   +    +   L  
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 55/284 (19%), Positives = 101/284 (35%), Gaps = 63/284 (22%)

Query: 373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNH 430
           D    +GS     V K    S G+E A   +    ++   + +  +   +++  L +V H
Sbjct: 15  DIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLH 74

Query: 431 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESE--HLDWGMRLRIAMGM 484
            N + L    E        ++ E    G LF+ +     + E E       ++ +I  G+
Sbjct: 75  HNVITLHDVYENRTDVV--LILELVSGGELFDFLAQKESLSEEEATSF---IK-QILDGV 128

Query: 485 AYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMAEMAA 534
            Y     H     IAH      N +             KL D  L+    + +    +  
Sbjct: 129 NYL----HTKK--IAHFDLKPENIMLLD--KNIPIPHIKLIDFGLAHEIEDGVEFKNIFG 180

Query: 535 TSKKLSSAP------SASLESNVYNFGVLLFEMVTGRLPYLVDN--GSLED-WAADYLSG 585
           T + +  AP         LE+++++ GV+ + +++G  P+L D    +L +  +  Y   
Sbjct: 181 TPEFV--APEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITSVSY--- 235

Query: 586 VQPLQQFVDPTLSSFDEEQLETLGE----LIKSCVRADPEKRPT 625
                         FDEE      E     I+  +  +  KR T
Sbjct: 236 -------------DFDEEFFSHTSELAKDFIRKLLVKETRKRLT 266

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 56/284 (19%), Positives = 101/284 (35%), Gaps = 63/284 (22%)

Query: 373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNH 430
           D    +GS     V K    S G+E A   +    ++   + +  +   +++  L +V H
Sbjct: 15  DIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLH 74

Query: 431 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESE--HLDWGMRLRIAMGM 484
            N + L    E        ++ E    G LF+ +     + E E       ++ +I  G+
Sbjct: 75  PNIITLHDVYENRTDVV--LILELVSGGELFDFLAQKESLSEEEATSF---IK-QILDGV 128

Query: 485 AYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMAEMAA 534
            Y     H     IAH      N +             KL D  L+    + +    +  
Sbjct: 129 NYL----HTKK--IAHFDLKPENIMLLD--KNIPIPHIKLIDFGLAHEIEDGVEFKNIFG 180

Query: 535 TSKKLSSAP------SASLESNVYNFGVLLFEMVTGRLPYLVDN--GSLED-WAADYLSG 585
           T + +  AP         LE+++++ GV+ + +++G  P+L D    +L +  A  Y   
Sbjct: 181 TPEFV--APEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITAVSY--- 235

Query: 586 VQPLQQFVDPTLSSFDEEQLETLGE----LIKSCVRADPEKRPT 625
                         FDEE      E     I+  +  +  KR T
Sbjct: 236 -------------DFDEEFFSQTSELAKDFIRKLLVKETRKRLT 266

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 57/277 (20%), Positives = 100/277 (36%), Gaps = 61/277 (22%)

Query: 377 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 435
           V+G    G VY G  LSN V IA+  +    ++           ++I     + HKN V 
Sbjct: 29  VLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRY-----SQPLHEEIALHKHLKHKNIVQ 83

Query: 436 LIGFCEEEEPFTRMMVFEYAPNGTL-----FEHIHIKESEHLDWGMRLRIAMGMAYCLEH 490
            +G   E       M  E  P G+L      +   +K++E        +I  G+ Y    
Sbjct: 84  YLGSFSENGFIKIFM--EQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKY---- 137

Query: 491 MHQLNPPIAH------NYL---NSSAVHLTEDY--AAKLSDLS----------FWNEIAM 529
           +H     I H      N L    S  + ++ D+  + +L+ ++           +    M
Sbjct: 138 LHDNQ--IVHRDIKGDNVLINTYSGVLKIS-DFGTSKRLAGINPCTETFTGTLQY----M 190

Query: 530 A-EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP 588
           A E+                +++++ G  + EM TG+ P+       E  AA +  G+  
Sbjct: 191 APEII-----DKGPRGYGKAADIWSLGCTIIEMATGKPPF---YELGEPQAAMFKVGMFK 242

Query: 589 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT 625
           +   +  ++S             I  C   DP+KR  
Sbjct: 243 VHPEIPESMS-------AEAKAFILKCFEPDPDKRAC 272

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 50/280 (17%), Positives = 109/280 (38%), Gaps = 62/280 (22%)

Query: 373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 431
           D    +GS   G V++    + G       ++     D     +   + +I  +++++H 
Sbjct: 54  DILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLD-----KYTVKNEISIMNQLHHP 108

Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHL---DWGMRLRIAMGMAYCL 488
             +NL    E++      ++ E+   G LF+ I   E   +   +    +R A      L
Sbjct: 109 KLINLHDAFEDKYEMV--LILEFLSGGELFDRI-AAEDYKMSEAEVINYMRQACE---GL 162

Query: 489 EHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMAEMAATSKK 538
           +HMH+ +  I H      N +  +     +  + K+ D  L+     +  +    AT++ 
Sbjct: 163 KHMHEHS--IVHLDIKPENIMCET----KKASSVKIIDFGLATKLNPDEIVKVTTATAEF 216

Query: 539 LSSAP------SASLESNVYNFGVLLFEMVTGRLPYLVDN--GSLED-WAADYLSGVQPL 589
              AP           ++++  GVL + +++G  P+  ++   +L++    D+       
Sbjct: 217 A--APEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDW------- 267

Query: 590 QQFVDPTLSSFDEEQLETLGE----LIKSCVRADPEKRPT 625
                     FDE+   ++       IK+ ++ +P KR T
Sbjct: 268 ---------EFDEDAFSSVSPEAKDFIKNLLQKEPRKRLT 298

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 55/299 (18%), Positives = 99/299 (33%), Gaps = 81/299 (27%)

Query: 373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVS---VASAKDWPKNLEVQFRKKIDTLSKV 428
             S  +GS   G V          ++A+  +S    A       +  +    +I+ L K+
Sbjct: 13  IMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKL 72

Query: 429 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESE--HLDWGMRLRIAM 482
           NH   + +  F + E+ +   +V E    G LF+ +     +KE+           ++ +
Sbjct: 73  NHPCIIKIKNFFDAEDYY---IVLELMEGGELFDKVVGNKRLKEATCKLY---FY-QMLL 125

Query: 483 GMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS-------FWNEI 527
            + Y     H+    I H      N L SS     ED   K++D   S           +
Sbjct: 126 AVQYL----HENG--IIHRDLKPENVLLSSQ---EEDCLIKITDFGHSKILGETSLMRTL 176

Query: 528 A-----MA-EMAATSKKLSSAPSA---SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDW 578
                 +A E+  +        +    SL       GV+LF  ++G  P+      +   
Sbjct: 177 CGTPTYLAPEVLVSVGTAGYNRAVDCWSL-------GVILFICLSGYPPFSEHRTQVSLK 229

Query: 579 ----AADYLSGVQPLQQFVDPTLSSFDEEQLETLGE----LIKSCVRADPEKRPTMRDI 629
               +  Y                +F  E    + E    L+K  +  DP+ R T  + 
Sbjct: 230 DQITSGKY----------------NFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEA 272

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 55.2 bits (133), Expect = 5e-08
 Identities = 56/277 (20%), Positives = 104/277 (37%), Gaps = 56/277 (20%)

Query: 373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 431
           D    +G+   G V++ T  + G   A   V      D     +   RK+I T+S + H 
Sbjct: 160 DIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESD-----KETVRKEIQTMSVLRHP 214

Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM 491
             VNL    E++      M++E+   G LFE +   E   +     +     +   L HM
Sbjct: 215 TLVNLHDAFEDDNEMV--MIYEFMSGGELFEKV-ADEHNKMSEDEAVEYMRQVCKGLCHM 271

Query: 492 HQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMAEMAATSKKLSS 541
           H+ N    H      N + ++          KL D  L+     + ++     T++    
Sbjct: 272 HENN--YVHLDLKPENIMFTT----KRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFA-- 323

Query: 542 AP------SASLESNVYNFGVLLFEMVTGRLPYLVDN--GSLED-WAADYLSGVQPLQQF 592
           AP           +++++ GVL + +++G  P+  +N   +L +  + D+          
Sbjct: 324 APEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDW---------- 373

Query: 593 VDPTLSSFDEEQLETLGE----LIKSCVRADPEKRPT 625
                 + D+     + E     I+  + ADP  R T
Sbjct: 374 ------NMDDSAFSGISEDGKDFIRKLLLADPNTRMT 404

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 53.5 bits (129), Expect = 8e-08
 Identities = 48/290 (16%), Positives = 85/290 (29%), Gaps = 76/290 (26%)

Query: 372 EDFS--NVIGSSPIGTVYKGT-LSNGVEIAV--ASVSVASAKDWPKNLEVQFRKKIDTLS 426
           + F   + +G    G V+K     +G   AV  +       KD       +   ++ +  
Sbjct: 57  QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKD-----RARKLAEVGSHE 111

Query: 427 KV-NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD----WGMRLRIA 481
           KV  H   V L    EE       +  E     +L +H        L     WG      
Sbjct: 112 KVGQHPCCVRLEQAWEEGGIL--YLQTELC-GPSLQQHCE-AWGASLPEAQVWGYLRDTL 167

Query: 482 MGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS 541
           +     L H+H     + H  +  + + L      KL D                 +L +
Sbjct: 168 LA----LAHLHSQG--LVHLDVKPANIFLGPRGRCKLGDF------------GLLVELGT 209

Query: 542 APSAS-------------LESNVYNF-------GVLLFEMVTGRLPYLVDNGSLEDWAAD 581
           A +               L+ + Y         G+ + E+                    
Sbjct: 210 AGAGEVQEGDPRYMAPELLQGS-YGTAADVFSLGLTILEVACNMELP------------H 256

Query: 582 YLSGVQPLQQ-FVDPTLSS-FDEEQLETLGELIKSCVRADPEKRPTMRDI 629
              G Q L+Q ++ P  ++    E    L  ++   +  DP+ R T   +
Sbjct: 257 GGEGWQQLRQGYLPPEFTAGLSSE----LRSVLVMMLEPDPKLRATAEAL 302

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.3 bits (131), Expect = 9e-08
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 9/103 (8%)

Query: 79  NLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEG-FGELEELEVLDFGHNNF 133
           +LK L L      T++     L  ++ +  ++++   +     F  L  L  LD  H + 
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 134 SGPLPNDLGINHSLTILLLDNNDFVGSLSPEI----YKLQVLS 172
                       SL +L +  N F  +  P+I      L  L 
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 9/109 (8%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
           +L  L L G    +LA      L+ ++ ++    + + +     G L+ L+ L+  HN  
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 134 -SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQL 181
            S  LP       +L  L L +N    S+      L+VL +  +    L
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTD--LRVLHQMPLLNLSL 182

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 22/84 (26%), Positives = 30/84 (35%), Gaps = 6/84 (7%)

Query: 94  QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND-LGINHSLTILLL 152
            SL ++  + + +          F  L  LEVL    N+F      D      +LT L L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 153 DNNDFVGSLSPEI----YKLQVLS 172
                   LSP        LQVL+
Sbjct: 478 SQCQL-EQLSPTAFNSLSSLQVLN 500

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 6/88 (6%)

Query: 79  NLKDLCLEG-----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 132
           +L+ L + G        P+I   L ++  + L       + P  F  L  L+VL+   N 
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505

Query: 133 FSGPLPNDLGINHSLTILLLDNNDFVGS 160
                        SL  + L  N +  S
Sbjct: 506 LKSVPDGIFDRLTSLQKIWLHTNPWDCS 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 79  NLKDLCLEG----TLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
            L+ L L      T+     QSL+H+ ++IL  N    +    F  L  L+ L     N 
Sbjct: 53  ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112

Query: 134 SGPLPNDLGINHSLTILLLDNN 155
           +      +G   +L  L + +N
Sbjct: 113 ASLENFPIGHLKTLKELNVAHN 134

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 10/62 (16%), Positives = 15/62 (24%)

Query: 94  QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153
            S   ++ + L       I    +  L  L  L    N              SL  L+  
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 154 NN 155
             
Sbjct: 109 ET 110

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 18/80 (22%), Positives = 25/80 (31%), Gaps = 5/80 (6%)

Query: 97  THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNND 156
              K++ L  N    +    F    EL+VLD                   L+ L+L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 157 FVGSLSPEI----YKLQVLS 172
              SL+         LQ L 
Sbjct: 88  IQ-SLALGAFSGLSSLQKLV 106

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 53.4 bits (129), Expect = 9e-08
 Identities = 55/291 (18%), Positives = 104/291 (35%), Gaps = 55/291 (18%)

Query: 377 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFV 434
           V+G      V     L    E AV  +              +  ++++ L +   H+N +
Sbjct: 20  VLGEGAHARVQTCINLITSQEYAVKIIEKQPGHI-----RSRVFREVEMLYQCQGHRNVL 74

Query: 435 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--SEHLDWGMRLRIAMGMAYCLEHMH 492
            LI F EEE+ F   +VFE    G++  HIH +   +E     +   +A  + +     H
Sbjct: 75  ELIEFFEEEDRF--YLVFEKMRGGSILSHIHKRRHFNELEASVVVQDVASALDFL----H 128

Query: 493 QLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LSFWNEIAMAEMAATSKKLSS--- 541
                IAH      N L        +    K+ D  L    ++       ++ +L +   
Sbjct: 129 NKG--IAHRDLKPENILCEHP---NQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCG 183

Query: 542 -----AP----SASLESNVYN-------FGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG 585
                AP    + S E+++Y+        GV+L+ +++G  P++   GS   W       
Sbjct: 184 SAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACP 243

Query: 586 VQPLQQFVDPTLS---SFDEEQLETLGE----LIKSCVRADPEKRPTMRDI 629
                 F +        F ++    +      LI   +  D ++R +   +
Sbjct: 244 ACQNMLF-ESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQV 293

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 53/290 (18%), Positives = 88/290 (30%), Gaps = 73/290 (25%)

Query: 373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 431
           +   VIG  P   V +      G + AV  V VA     P       +++      + H 
Sbjct: 27  ELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHP 86

Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWG-------MRLRIAMGM 484
           + V L+     +      MVFE+     L   I  +      +        MR +I   +
Sbjct: 87  HIVELLETYSSDGMLY--MVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMR-QILEAL 143

Query: 485 AYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LSFWNEIAMAEMAATS 536
            YC    H  N  I H        L +S          KL    ++        ++  + 
Sbjct: 144 RYC----HDNN--IIHRDVKPHCVLLASK---ENSAPVKLGGFGVA-------IQLGESG 187

Query: 537 KKLSS--------APSASLESNVYNF-------GVLLFEMVTGRLPYLVDNGSLED--WA 579
                        AP   ++   Y         GV+LF +++G LP+      L +    
Sbjct: 188 LVAGGRVGTPHFMAPEV-VKREPYGKPVDVWGCGVILFILLSGCLPFYGTKERLFEGIIK 246

Query: 580 ADYLSGVQPLQQFVDPTLSSFDEEQLETLGE----LIKSCVRADPEKRPT 625
             Y                  +  Q   + E    L++  +  DP +R T
Sbjct: 247 GKY----------------KMNPRQWSHISESAKDLVRRMLMLDPAERIT 280

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 52.6 bits (127), Expect = 1e-07
 Identities = 53/244 (21%), Positives = 93/244 (38%), Gaps = 64/244 (26%)

Query: 413 NLEVQFRKKIDTLSKVNHKNFVNLIGFCEE--EEPFTRMMVFEYAPNGTLFEHI----HI 466
           ++  + +++I  L    H + + L     +    P    MV EY   G LF++I     +
Sbjct: 53  DVVGKIKREIQNLKLFRHPHIIKLY----QVISTPTDFFMVMEYVSGGELFDYICKHGRV 108

Query: 467 KESEHLDWGMRL--RIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKL 518
           +E E      RL  +I   + YC    H+    + H      N L      L     AK+
Sbjct: 109 EEME----ARRLFQQILSAVDYC----HRHM--VVHRDLKPENVL------LDAHMNAKI 152

Query: 519 SDLSFWNEIAMAEMAATS-------------KKLSSAPSASLESNVYNFGVLLFEMVTGR 565
           +D    N ++  E   TS              +L + P    E ++++ GV+L+ ++ G 
Sbjct: 153 ADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGP----EVDIWSCGVILYALLCGT 208

Query: 566 LPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPT 625
           LP+  D+  +         G      F  P   +           L+   ++ DP KR T
Sbjct: 209 LPF--DDEHVPTLFKKIRGG-----VFYIPEYLNRSVA------TLLMHMLQVDPLKRAT 255

Query: 626 MRDI 629
           ++DI
Sbjct: 256 IKDI 259

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.8 bits (129), Expect = 1e-07
 Identities = 14/100 (14%), Positives = 35/100 (35%), Gaps = 5/100 (5%)

Query: 77  NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 136
           ++++     +     E  +L + K +  +N++   +         ++E+L+         
Sbjct: 31  DVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI 90

Query: 137 LPNDLGINHSLTILLLDNNDFVGSLSPEIY----KLQVLS 172
                   H++  L +  N     L P ++     L VL 
Sbjct: 91  DTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLV 129

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.2 bits (117), Expect = 4e-06
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 76  VNLNLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 132
           VN+ L  L L+    T    + +   +  + L  N    I+   F +++ LE L   +N 
Sbjct: 230 VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289

Query: 133 FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
               L        +L +L L +N  +  +     +   L  
Sbjct: 290 LVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 328

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.1 bits (109), Expect = 3e-05
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 8/83 (9%)

Query: 79  NLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134
            L+ L +       L    Q +  +K + L +N     +     + + LE L   HN+  
Sbjct: 279 RLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337

Query: 135 GPLPNDLGINHSLTILLLDNNDF 157
             L   L  +H+L  L L +ND+
Sbjct: 338 -TLK--LSTHHTLKNLTLSHNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 5/82 (6%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
            ++ L L       +          I+ + +  N+   + P  F  +  L VL    N+ 
Sbjct: 76  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135

Query: 134 SGPLPNDLGINHSLTILLLDNN 155
           S            LT L + NN
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNN 157

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.8 bits (98), Expect = 7e-04
 Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 10/99 (10%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
            L  L LE     +L   I  +   + ++ + NN+   I  + F     L+ L    N  
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183

Query: 134 SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 172
           +  +   L +  SL    +  N    +L+  I  ++ L 
Sbjct: 184 TH-VD--LSLIPSLFHANVSYNLL-STLAIPI-AVEELD 217

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 14/100 (14%), Positives = 36/100 (36%), Gaps = 5/100 (5%)

Query: 77  NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 136
           ++++     +     E  +L + K +  +N++   +         ++E+L+         
Sbjct: 25  DVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI 84

Query: 137 LPNDLGINHSLTILLLDNNDFVGSLSPEIY----KLQVLS 172
                   H++  L +  N  +  L P ++     L VL 
Sbjct: 85  DTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLV 123

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.3 bits (113), Expect = 9e-06
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 76  VNLNLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 132
           VN+ L  L L+    T    + +   +  + L  N    I+   F +++ LE L   +N 
Sbjct: 224 VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283

Query: 133 FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
               L        +L +L L +N  +  +     +   L  
Sbjct: 284 LVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 322

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 8/83 (9%)

Query: 79  NLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134
            L+ L +       L    Q +  +K + L +N     +     + + LE L   HN+  
Sbjct: 273 RLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

Query: 135 GPLPNDLGINHSLTILLLDNNDF 157
             L   L  +H+L  L L +ND+
Sbjct: 332 -TLK--LSTHHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
            ++ L +       L P + Q++  +  ++L  N  S +    F    +L  L   +NN 
Sbjct: 94  TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 153

Query: 134 SGPLPNDLGIN-HSLTILLLDNN 155
              + +D      SL  L L +N
Sbjct: 154 ER-IEDDTFQATTSLQNLQLSSN 175

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
            ++ L L       +          I+ + +  N+   + P  F  +  L VL    N+ 
Sbjct: 70  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129

Query: 134 SGPLPNDLGIN-HSLTILLLDNNDFVGSLSPEI----YKLQVL 171
           S  LP  +  N   LT L + NN+    +  +       LQ L
Sbjct: 130 SS-LPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNL 170

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 10/99 (10%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
            L  L LE     +L   I  +   + ++ + NN+   I  + F     L+ L    N  
Sbjct: 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177

Query: 134 SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 172
           +  +   L +  SL    +  N    +L+  I  ++ L 
Sbjct: 178 TH-VD--LSLIPSLFHANVSYNLL-STLAIPI-AVEELD 211

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 17/100 (17%), Positives = 38/100 (38%), Gaps = 7/100 (7%)

Query: 79  NLKDLCLEGT----LAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134
           N+KDL +         P I  L++++ + +     +         L  L +LD  H+   
Sbjct: 67  NIKDLTINNIHATNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 135 GPLPNDLGINHSLTILLLDNNDFVGSLSP--EIYKLQVLS 172
             +   +     +  + L  N  +  + P   + +L+ L+
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLN 165

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 9/101 (8%)

Query: 79  NLKDLCLEGT-----LAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
           NL+ L + G        P +  LT +  + + +++    I      L ++  +D  +N  
Sbjct: 89  NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

Query: 134 SGPLPNDLGINHSLTILLLDNNDFVGSLSP--EIYKLQVLS 172
              +   L     L  L +  +  V       +  KL  L 
Sbjct: 149 ITDIMP-LKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLY 187

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 46/281 (16%), Positives = 96/281 (34%), Gaps = 65/281 (23%)

Query: 373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 431
             +  +G    G V++    S+        V V    D     +V  +K+I  L+   H+
Sbjct: 8   MIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKV-KGTD-----QVLVKKEISILNIARHR 61

Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHL---DWGMRLR-IAMGMAYC 487
           N ++L    E  E     M+FE+     +FE I    +  L   +    +  +   + + 
Sbjct: 62  NILHLHESFESMEELV--MIFEFISGLDIFERI-NTSAFELNEREIVSYVHQVCEALQFL 118

Query: 488 LEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMAEMAATSK 537
               H  N  I H      N +  +          K+ +   +           +    +
Sbjct: 119 ----HSHN--IGHFDIRPENIIYQT----RRSSTIKIIEFGQARQLKPGDNFRLLFTAPE 168

Query: 538 KLSSAP------SASLESNVYNFGVLLFEMVTGRLPYLVDN--GSLED-WAADYLSGVQP 588
               AP        S  +++++ G L++ +++G  P+L +     +E+   A+Y      
Sbjct: 169 YY--APEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEY------ 220

Query: 589 LQQFVDPTLSSFDEEQLETLGE----LIKSCVRADPEKRPT 625
                     +FDEE  + +       +   +  + + R T
Sbjct: 221 ----------TFDEEAFKEISIEAMDFVDRLLVKERKSRMT 251

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.8 bits (125), Expect = 4e-07
 Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 5/80 (6%)

Query: 79  NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 135
            LK L +     +    + +L+ + S+ L NN       E  G L  L  L    N+ + 
Sbjct: 266 KLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

Query: 136 PLPNDLGINHSLTILLLDNN 155
             P  L     +      N 
Sbjct: 326 IRP--LASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 7/80 (8%)

Query: 79  NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 135
           ++  L + G        I+ LT+++ + L  N  + I P     L +L  L  G N  + 
Sbjct: 45  SITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD 102

Query: 136 PLPNDLGINHSLTILLLDNN 155
                L    +L  L L+ +
Sbjct: 103 ISA--LQNLTNLRELYLNED 120

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 7/98 (7%)

Query: 79  NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 135
            L  L +     T    + +L+ +  + +  N  S I      +L +L++L+ G N  S 
Sbjct: 222 RLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD 279

Query: 136 PLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
                L     L  L L+NN         I  L  L+ 
Sbjct: 280 ISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.5 bits (106), Expect = 7e-05
 Identities = 16/101 (15%), Positives = 30/101 (29%), Gaps = 26/101 (25%)

Query: 79  NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGI---------------------IP 114
            L +L +     T    +Q+LT+++ + L  ++ S I                       
Sbjct: 89  KLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDL 148

Query: 115 EGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN 155
                +  L  L    +      P  +     L  L L+ N
Sbjct: 149 SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.5 bits (106), Expect = 8e-05
 Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 7/80 (8%)

Query: 79  NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 135
           +L  L L          + SLT +       N  + I P     +  L  L  G+N  + 
Sbjct: 178 DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD 235

Query: 136 PLPNDLGINHSLTILLLDNN 155
             P  L     LT L +  N
Sbjct: 236 LSP--LANLSQLTWLEIGTN 253

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 51.0 bits (123), Expect = 4e-07
 Identities = 52/284 (18%), Positives = 101/284 (35%), Gaps = 63/284 (22%)

Query: 373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNH 430
           +    +GS     V K      G E A   +         + +  +   ++++ L ++ H
Sbjct: 8   EMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRH 67

Query: 431 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESE--HLDWGMRLRIAMGM 484
            N + L    E +      ++ E    G LF+ +     + E E       ++ +I  G+
Sbjct: 68  PNIITLHDIFENKTDVV--LILELVSGGELFDFLAEKESLTEDEATQF---LK-QILDGV 121

Query: 485 AYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMAEMAA 534
            Y     H     IAH      N +         +   KL D  ++           +  
Sbjct: 122 HYL----HSKR--IAHFDLKPENIMLLD--KNVPNPRIKLIDFGIAHKIEAGNEFKNIFG 173

Query: 535 TSKKLSSAP------SASLESNVYNFGVLLFEMVTGRLPYLVDN--GSLED-WAADYLSG 585
           T + +  AP         LE+++++ GV+ + +++G  P+L +    +L +  A +Y   
Sbjct: 174 TPEFV--APEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNY--- 228

Query: 586 VQPLQQFVDPTLSSFDEEQLETLGE----LIKSCVRADPEKRPT 625
                         FDEE      E     I+  +  DP++R T
Sbjct: 229 -------------DFDEEYFSNTSELAKDFIRRLLVKDPKRRMT 259

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 50.7 bits (122), Expect = 6e-07
 Identities = 54/284 (19%), Positives = 102/284 (35%), Gaps = 63/284 (22%)

Query: 373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNH 430
           D    +GS     V K    S G++ A   +     K   + +  +   +++  L ++ H
Sbjct: 14  DTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQH 73

Query: 431 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESE--HLDWGMRLRIAMGM 484
            N + L    E +      ++ E    G LF+ +     + E E       ++ +I  G+
Sbjct: 74  PNVITLHEVYENKTDVI--LILELVAGGELFDFLAEKESLTEEEATEF---LK-QILNGV 127

Query: 485 AYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMAEMAA 534
            Y     H L   IAH      N +             K+ D  L+           +  
Sbjct: 128 YYL----HSLQ--IAHFDLKPENIMLLD--RNVPKPRIKIIDFGLAHKIDFGNEFKNIFG 179

Query: 535 TSKKLSSAP------SASLESNVYNFGVLLFEMVTGRLPYLVDN--GSLED-WAADYLSG 585
           T + +  AP         LE+++++ GV+ + +++G  P+L D    +L +  A +Y   
Sbjct: 180 TPEFV--APEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNY--- 234

Query: 586 VQPLQQFVDPTLSSFDEEQLETLGE----LIKSCVRADPEKRPT 625
                         F++E            I+  +  DP+KR T
Sbjct: 235 -------------EFEDEYFSNTSALAKDFIRRLLVKDPKKRMT 265

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 50.3 bits (121), Expect = 6e-07
 Identities = 57/279 (20%), Positives = 91/279 (32%), Gaps = 61/279 (21%)

Query: 378 IGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNL 436
           +G    G V           +AV  V          +     +K+I     +NH+N V  
Sbjct: 15  LGEGAYGEVQLAVNRVTEEAVAVKIVD----MKRAVDCPENIKKEICINKMLNHENVVKF 70

Query: 437 IGFCEEEEPFTRM-MVFEYAPNGTLFEHI--HIKESEHLDWGMRLRIAMGMAYCLEHMHQ 493
            G   E        +  EY   G LF+ I   I   E        ++  G+ Y     H 
Sbjct: 71  YGHRREG---NIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYL----HG 123

Query: 494 LNPPIAH------NYLNSSAVHLTEDYAAKLSD--LSFWNEIAMAEMAATSKKLSS---- 541
           +   I H      N L      L E    K+SD  L+      +       + L+     
Sbjct: 124 IG--ITHRDIKPENLL------LDERDNLKISDFGLA-----TVFRYNNRERLLNKMCGT 170

Query: 542 ----APS-------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQ 590
               AP         +   +V++ G++L  M+ G LP+  D  S  D   +Y    +  +
Sbjct: 171 LPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPW--DQPS--DSCQEYSDWKE--K 224

Query: 591 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
           +         D   L     L+   +  +P  R T+ DI
Sbjct: 225 KTYLNPWKKIDSAPL----ALLHKILVENPSARITIPDI 259

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 50.7 bits (122), Expect = 7e-07
 Identities = 43/255 (16%), Positives = 80/255 (31%), Gaps = 50/255 (19%)

Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEE-PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGM 476
            +++  T  ++   + V +  F E +   +   +         L   +  +    L    
Sbjct: 81  MQREARTAGRLQEPHVVPIHDFGEIDGQLY---VDMRLINGVDLAAML--RRQGPLAPPR 135

Query: 477 RLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSFWNEIAMA 530
            + I   +   L+  H       H      N L      ++ D  A L D  F   IA A
Sbjct: 136 AVAIVRQIGSALDAAHAAG--ATHRDVKPENIL------VSADDFAYLVD--F--GIASA 183

Query: 531 E----MAATSKKLSSAPSASLE----------SNVYNFGVLLFEMVTGRLPYLVDNGSLE 576
                +      + +    + E          +++Y    +L+E +TG  PY  D  S+ 
Sbjct: 184 TTDEKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLSV- 242

Query: 577 DWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKR-PTMRDIAAILRE 635
                       + Q + P  S+           +I   +  +PE R  T  D++A    
Sbjct: 243 --------MGAHINQAI-PRPSTVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHA 293

Query: 636 -ITGITPDGAIPKLS 649
            +     D A   L 
Sbjct: 294 ALATADQDRATDILR 308

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 50.9 bits (122), Expect = 7e-07
 Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 43/270 (15%)

Query: 378 IGSSPIGTVYKGT-LSNGVEIAVASVS---VASAKDWPKNLEVQFRKKIDTLSKVNHKNF 433
           +GS   G V+         E+ V  +    V            +   +I  LS+V H N 
Sbjct: 32  LGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANI 91

Query: 434 VNLIGFCEEEEPFTRMMVFEYAPNGT-LFEHI--HIKESEHLDWGMRLRIAMGMAYCLEH 490
           + ++   E +  F   +V E   +G  LF  I  H +  E L   +  ++   + Y    
Sbjct: 92  IKVLDIFENQGFF--QLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYL--- 146

Query: 491 MHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATS---------KKLSS 541
               +  I H  +    + + ED+  KL D      +   ++  T          + L  
Sbjct: 147 -RLKD--IIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGKLFYTFCGTIEYCAPEVLMG 203

Query: 542 APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD 601
            P    E  +++ GV L+ +V    P+            + +           P L S +
Sbjct: 204 NPYRGPELEMWSLGVTLYTLVFEENPF--------CELEETVEA-----AIHPPYLVSKE 250

Query: 602 EEQLETLGELIKSCVRADPEKRPTMRDIAA 631
                    L+   ++  PE+R T+  +  
Sbjct: 251 LM------SLVSGLLQPVPERRTTLEKLVT 274

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 50.9 bits (122), Expect = 8e-07
 Identities = 54/277 (19%), Positives = 111/277 (40%), Gaps = 64/277 (23%)

Query: 377 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 435
           ++G    G V+K    + G+++A   +     KD     + + + +I  +++++H N + 
Sbjct: 96  ILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKD-----KEEVKNEISVMNQLDHANLIQ 150

Query: 436 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHL---DWGMRLR-IAMGMAYCLEHM 491
           L    E +      +V EY   G LF+ I I ES +L   D  + ++ I  G+ +     
Sbjct: 151 LYDAFESKNDIV--LVMEYVDGGELFDRI-IDESYNLTELDTILFMKQICEGIRHM---- 203

Query: 492 HQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMAEMAATSKKLSS 541
           HQ+   I H      N L  +     +    K+ D  L+  +     +     T + L  
Sbjct: 204 HQMY--ILHLDLKPENILCVN----RDAKQIKIIDFGLARRYKPREKLKVNFGTPEFL-- 255

Query: 542 AP------SASLESNVYNFGVLLFEMVTGRLPYLVDN--GSLED-WAADYLSGVQPLQQF 592
           AP        S  +++++ GV+ + +++G  P+L DN   +L +  A  +          
Sbjct: 256 APEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAETLNNILACRW---------- 305

Query: 593 VDPTLSSFDEEQLETLGE----LIKSCVRADPEKRPT 625
                   ++E+ + + E     I   +  +   R +
Sbjct: 306 ------DLEDEEFQDISEEAKEFISKLLIKEKSWRIS 336

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 50.4 bits (121), Expect = 9e-07
 Identities = 58/284 (20%), Positives = 101/284 (35%), Gaps = 64/284 (22%)

Query: 377 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFV 434
            +G        K     +    AV  +S        K +E   +K+I  L     H N V
Sbjct: 18  PLGEGSFSICRKCVHKKSNQAFAVKIIS--------KRMEANTQKEITALKLCEGHPNIV 69

Query: 435 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--SEHLDWGMRLRIAMGMAYCLEHMH 492
            L     ++      +V E    G LFE I  K+  SE         I   +   + HMH
Sbjct: 70  KLHEVFHDQLHTF--LVMELLNGGELFERIKKKKHFSET----EASYIMRKLVSAVSHMH 123

Query: 493 QLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LSFWNEIAMAEMAATSKKLSS--- 541
            +   + H      N L +      ++   K+ D   +             ++ L +   
Sbjct: 124 DVG--VVHRDLKPENLLFTDE---NDNLEIKIIDFGFA-------RLKPPDNQPLKTPCF 171

Query: 542 -----APSASLESNVYN-------FGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL 589
                AP   L  N Y+        GV+L+ M++G++P+   + SL   +A  +     +
Sbjct: 172 TLHYAAPEL-LNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEI-----M 225

Query: 590 QQFVDPTLSSFDEEQLETLGE----LIKSCVRADPEKRPTMRDI 629
           ++       SF+ E  + + +    LI+  +  DP KR  M  +
Sbjct: 226 KKIKKGDF-SFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGL 268

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 57/245 (23%), Positives = 94/245 (38%), Gaps = 66/245 (26%)

Query: 413 NLEVQFRKKIDTLSKVNHKNFVNL---IGFCEEEEPFTRMMVFEYAPNGTLFEHI----H 465
           ++  + R++I  L    H + + L   I       P    MV EY   G LF++I     
Sbjct: 58  DVVGKIRREIQNLKLFRHPHIIKLYQVI-----STPSDIFMVMEYVSGGELFDYICKNGR 112

Query: 466 IKESEHLDWGMRL--RIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAK 517
           + E E      RL  +I  G+ YC    H+    + H      N L      L     AK
Sbjct: 113 LDEKE----SRRLFQQILSGVDYC----HRHM--VVHRDLKPENVL------LDAHMNAK 156

Query: 518 LSDLSFWNEIAMAEMAATS-------------KKLSSAPSASLESNVYNFGVLLFEMVTG 564
           ++D    N ++  E   TS              +L + P    E ++++ GV+L+ ++ G
Sbjct: 157 IADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGP----EVDIWSSGVILYALLCG 212

Query: 565 RLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRP 624
            LP+  D+  +         G      F  P   +           L+K  ++ DP KR 
Sbjct: 213 TLPF--DDDHVPTLFKKICDG-----IFYTPQYLNPSVI------SLLKHMLQVDPMKRA 259

Query: 625 TMRDI 629
           T++DI
Sbjct: 260 TIKDI 264

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 9/102 (8%)

Query: 73  GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 132
             +  +   +  LE  L PE+Q+L  + +I   NNS   +          LE +  G+N 
Sbjct: 173 PSLEFIAAGNNQLE-EL-PELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNI 226

Query: 133 FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSES 174
                  +L     LT +  DNN    +L      L+ L+  
Sbjct: 227 LE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVR 265

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 20/124 (16%), Positives = 33/124 (26%), Gaps = 22/124 (17%)

Query: 77  NLNLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEE---------- 122
           N  L++          +  E +++          + +    P G GE  E          
Sbjct: 10  NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 123 ---LEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEG 179
                 L+  +   S  LP        L  L+   N     L      L+ L     +  
Sbjct: 70  DRQAHELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK 124

Query: 180 QLSS 183
            LS 
Sbjct: 125 ALSD 128

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.1 bits (115), Expect = 7e-06
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 79  NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 135
            L+ L +        PE+Q+ + +K I + NNS    +P+       LE +  G+N    
Sbjct: 132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPD---LPPSLEFIAAGNNQLEE 187

Query: 136 PLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVL 171
            LP +L     LT +  DNN     L      L+ +
Sbjct: 188 -LP-ELQNLPFLTAIYADNNSLK-KLPDLPLSLESI 220

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 25/118 (21%), Positives = 40/118 (33%), Gaps = 21/118 (17%)

Query: 69  ECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDF 128
           +C D +   L L +L L  +L      L  +   +   NS +  +PE    L+ L V + 
Sbjct: 67  DCLDRQAHELELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQSLKSLLVDNN 121

Query: 129 GHNNFSGPLPN----DLGINH-----------SLTILLLDNNDFVGSLSPEIYKLQVL 171
                S   P      +  N             L I+ +DNN     L      L+ +
Sbjct: 122 NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI 178

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 13/97 (13%), Positives = 30/97 (30%), Gaps = 15/97 (15%)

Query: 89  LAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLG------ 142
           + P   S T ++  +  +++ +  +P     ++         + +    P   G      
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 143 -------INHSLTILLLDNNDFVGSLSPEIYKLQVLS 172
                  ++     L L+N     SL      L+ L 
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLS-SLPELPPHLESLV 97

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 27/157 (17%), Positives = 45/157 (28%), Gaps = 23/157 (14%)

Query: 18  ISQSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSDGKVVN 77
           +        +LN     L  L E           S    D   N  S  G+      +  
Sbjct: 252 LPDLPPSLEALNVRDNYLTDLPE--------LPQSLTFLDVSENIFS--GLSELPPNLYY 301

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 137
           LN     +  +L     SL  +    + NN     +P        LE L    N+ +  +
Sbjct: 302 LNASSNEIR-SLCDLPPSLEEL---NVSNNKLI-ELPA---LPPRLERLIASFNHLAE-V 352

Query: 138 PNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSES 174
           P       +L  L ++ N            ++ L  +
Sbjct: 353 PELPQ---NLKQLHVEYNPLR-EFPDIPESVEDLRMN 385

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 24/100 (24%), Positives = 35/100 (35%), Gaps = 6/100 (6%)

Query: 79  NLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134
            LK L L       + PE QS   +  I LRNN    +I +     + LE  D   N F 
Sbjct: 192 KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

Query: 135 -GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
            G L +    N  +  +       +   + E   +  L  
Sbjct: 251 CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
             K   +           + QS  ++K + L  N  S I         +LE+L+   N  
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 134 SGPLPNDLGINHSLTILLLDNN 155
              L   L    +L  L L+NN
Sbjct: 71  YETLD--LESLSTLRTLDLNNN 90

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 10/101 (9%)

Query: 79  NLKDLCLEG------TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 132
            ++ L L+         A    S   ++ + L+ N    +  +      +L+ LD   N 
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNK 202

Query: 133 FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
            +  +  +      +T + L NN  V  +   +   Q L  
Sbjct: 203 LAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 13/63 (20%), Positives = 22/63 (34%)

Query: 93  IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152
            Q+    K   + ++S    +         ++ LD   N  S     DL     L +L L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 153 DNN 155
            +N
Sbjct: 66  SSN 68

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 12/101 (11%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
           +++ L         ++    Q   +I    L NN  + +     G    ++ LD   N  
Sbjct: 100 SIETLHAANNNISRVSCSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEI 156

Query: 134 SG-PLPNDLGINHSLTILLLDNNDFVGSLSPEIY--KLQVL 171
                      + +L  L L  N     +  ++   KL+ L
Sbjct: 157 DTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTL 196

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 137
             + D  L+  LA   QS  ++K + L  N  S I         +LE+L+   N      
Sbjct: 15  EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-- 72

Query: 138 PNDLGINHSLTILLLDNN 155
             DL    +L  L L+NN
Sbjct: 73  TLDLESLSTLRTLDLNNN 90

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.7 bits (116), Expect = 5e-06
 Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 2/79 (2%)

Query: 93  IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152
            Q+    K   + ++S    +         ++ LD   N  S     DL     L +L L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 153 DNNDFVGSLSPEIYKLQVL 171
            +N      + ++  L  L
Sbjct: 66  SSNVL--YETLDLESLSTL 82

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.9 bits (114), Expect = 7e-06
 Identities = 21/109 (19%), Positives = 32/109 (29%), Gaps = 6/109 (5%)

Query: 79  NLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134
            LK L L       + PE QS   +  I LRNN    +I +     + LE  D   N F 
Sbjct: 192 KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

Query: 135 GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183
                D   + +  +  +              +  V +           
Sbjct: 251 CGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED 298

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 6/98 (6%)

Query: 79  NLKDLCLEGTLAPEIQ--SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG- 135
           +++ L         +        K+I L NN  + +     G    ++ LD   N     
Sbjct: 100 SIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159

Query: 136 PLPNDLGINHSLTILLLDNNDFVGSLSPEIY--KLQVL 171
                   + +L  L L  N     +  ++   KL+ L
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTL 196

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.8 bits (106), Expect = 8e-05
 Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 4/108 (3%)

Query: 77  NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGI-IPEGFGELEELEVLDFGHNNFSG 135
           N+ L +  +      +    + ++ + L+ N    +   E     + LE L+  +N    
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183

Query: 136 PLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183
            +   +     L  L L +N     + PE      ++   +   +L  
Sbjct: 184 -VKGQVVF-AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL 228

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 65/290 (22%), Positives = 106/290 (36%), Gaps = 73/290 (25%)

Query: 373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 431
           +   ++G    G V K        E AV  ++ ASAK   K+      ++++ L K++H 
Sbjct: 25  NIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAK--NKDTS-TILREVELLKKLDHP 81

Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--SEHLDWGMRLRIAMGMAYCLE 489
           N + L    E+   F   +V E    G LF+ I  ++  SEH    +  ++  G+ Y   
Sbjct: 82  NIMKLFEILEDSSSFY--IVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYM-- 137

Query: 490 HMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMAEMAATSKKL 539
             H+ N  I H      N L  S     +D   K+ D  LS  F     M +   T+  +
Sbjct: 138 --HKHN--IVHRDLKPENILLESK---EKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYI 190

Query: 540 SSAP-----SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 594
             AP     +   + +V++ GV+L+ +                     LSG  P   F  
Sbjct: 191 --APEVLRGTYDEKCDVWSAGVILYIL---------------------LSGTPP---FYG 224

Query: 595 PTLS-----------SFDEEQLETLGE----LIKSCVRADPEKRPTMRDI 629
                          +FD  Q  T+ +    LI+  +   P  R T    
Sbjct: 225 KNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQC 274

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 58/245 (23%), Positives = 99/245 (40%), Gaps = 67/245 (27%)

Query: 413 NLEVQFRKKIDTLSKVNHKNFVNL---IGFCEEEEPFTRMMVFEYAPNGTLFEHI----H 465
           ++ ++  ++I  L  + H + + L   I       P   +MV EYA  G LF++I     
Sbjct: 51  DMHMRVEREISYLKLLRHPHIIKLYDVI-----TTPTDIVMVIEYA-GGELFDYIVEKKR 104

Query: 466 IKESEHLDWGMRL--RIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAK 517
           + E E    G R   +I   + YC    H+    I H      N L      L ++   K
Sbjct: 105 MTEDE----GRRFFQQIICAIEYC----HRHK--IVHRDLKPENLL------LDDNLNVK 148

Query: 518 LSDLSFWNEIAMAEMAATS-------------KKLSSAPSASLESNVYNFGVLLFEMVTG 564
           ++D    N +       TS              KL + P    E +V++ G++L+ M+ G
Sbjct: 149 IADFGLSNIMTDGNFLKTSCGSPNYAAPEVINGKLYAGP----EVDVWSCGIVLYVMLVG 204

Query: 565 RLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRP 624
           RLP+  D+  + +      S       +V P   S   +       LI+  + ADP +R 
Sbjct: 205 RLPF--DDEFIPNLFKKVNSC-----VYVMPDFLSPGAQ------SLIRRMIVADPMQRI 251

Query: 625 TMRDI 629
           T+++I
Sbjct: 252 TIQEI 256

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 9/98 (9%)

Query: 79  NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 135
            L +L L          I +L ++  + L  N+ S I P     L +L+ L F +N  S 
Sbjct: 288 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD 345

Query: 136 PLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
              + L    ++  L   +N         +  L  +++
Sbjct: 346 --VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQ 379

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 7/80 (8%)

Query: 79  NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 135
            +  L  +         ++ L ++  I   NN  + I P     L +L  +   +N  + 
Sbjct: 47  QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD 104

Query: 136 PLPNDLGINHSLTILLLDNN 155
             P  L    +LT L L NN
Sbjct: 105 ITP--LANLTNLTGLTLFNN 122

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 7/80 (8%)

Query: 79  NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 135
           NL +L L G        + SLT++  + L NN  S + P     L +L  L  G N  S 
Sbjct: 222 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 279

Query: 136 PLPNDLGINHSLTILLLDNN 155
             P  L    +LT L L+ N
Sbjct: 280 ISP--LAGLTALTNLELNEN 297

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 16/109 (14%), Positives = 35/109 (32%), Gaps = 9/109 (8%)

Query: 79  NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 135
            L+ L       +    + +LT+I  +   +N  S + P     L  +  L      ++ 
Sbjct: 332 KLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389

Query: 136 PLPNDLGINHSLTILLLDNNDFVGSLSP-EIYKLQVLSESQVDEGQLSS 183
                +    +++I     N     ++P  I      +E  +     S 
Sbjct: 390 A---PVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSY 435

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.3 bits (108), Expect = 5e-05
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 79  NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 135
            L+ L +     +    +  LT+++S+I  NN  S I P   G L  L+ L    N    
Sbjct: 178 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD 235

Query: 136 PLPNDLGINHSLTILLLDNN 155
                L    +LT L L NN
Sbjct: 236 --IGTLASLTNLTDLDLANN 253

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 8/80 (10%)

Query: 79  NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 135
           NL  L L     +    +  LT ++ +   N   + + P     L  LE LD   N  S 
Sbjct: 135 NLNRLELSSNTISDISALSGLTSLQQLSFGNQ-VTDLKP--LANLTTLERLDISSNKVSD 191

Query: 136 PLPNDLGINHSLTILLLDNN 155
              + L    +L  L+  NN
Sbjct: 192 --ISVLAKLTNLESLIATNN 209

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 79  NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 135
           NL  L L     T    +++LT++  + L +N+ S I       L  L+ L FG N  + 
Sbjct: 113 NLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTD 169

Query: 136 PLPNDLGINHSLTILLLDNN 155
             P  L    +L  L + +N
Sbjct: 170 LKP--LANLTTLERLDISSN 187

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 51/284 (17%), Positives = 97/284 (34%), Gaps = 73/284 (25%)

Query: 377 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPK-NLEVQFRKKIDTLSKVNHK--N 432
           ++GS   G+VY G  +S+ + +A+  V      DW +     +   ++  L KV+     
Sbjct: 50  LLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSG 109

Query: 433 FVNLIGFCEEEEPFTRMMVFEYA-PNGTLFEHI----HIKESE--HLDWGMRLRIAMGMA 485
            + L+ + E  + F  +++ E   P   LF+ I     ++E            ++   + 
Sbjct: 110 VIRLLDWFERPDSF--VLILERPEPVQDLFDFITERGALQEELARSF---FW-QVLEAVR 163

Query: 486 YCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSFWNEI------------ 527
           +C    H     + H      N L             KL D      +            
Sbjct: 164 HC----HNCG--VLHRDIKDENILID-----LNRGELKLIDFGSGALLKDTVYTDFDGTR 212

Query: 528 --AMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG 585
             +  E                 + V++ G+LL++MV G +P+        +   + + G
Sbjct: 213 VYSPPEW--IRYHRYHGR----SAAVWSLGILLYDMVCGDIPF--------EHDEEIIRG 258

Query: 586 VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
                Q       S + +       LI+ C+   P  RPT  +I
Sbjct: 259 -----QVFFRQRVSSECQH------LIRWCLALRPSDRPTFEEI 291

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 42/289 (14%), Positives = 93/289 (32%), Gaps = 65/289 (22%)

Query: 377 VIGSSPIGTVYKGT-LSNGVEIAV--ASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKN 432
            IGS   G+V+K     +G   A+  +   +A + D     E    +++   + +  H +
Sbjct: 18  KIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVD-----EQNALREVYAHAVLGQHSH 72

Query: 433 FVNLIGFCEEEEPFTRMMVF-EYAPNGTLFEHI--HIKESEHLD----WGMRLRIAMGMA 485
            V       E++    M++  EY   G+L + I  + +   +        + L++  G  
Sbjct: 73  VVRYFSAWAEDD---HMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRG-- 127

Query: 486 YCLEHMHQLNPPIAH------N-YLNSSAVHLTEDYAAKLSDLSFWNE---IAMAEMAAT 535
             L ++H ++  + H      N +++ +++           D +       I        
Sbjct: 128 --LRYIHSMS--LVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTR 183

Query: 536 SKKLSS--------APSASLESNVYNF-------GVLLFEMVTGRLPYLVDNGSLEDWAA 580
                         A     E+  +          + +             NG       
Sbjct: 184 ISSPQVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLP--RNGDQ----- 236

Query: 581 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
                   ++Q   P +     ++     EL+K  +  DPE+RP+   +
Sbjct: 237 -----WHEIRQGRLPRIPQVLSQEFT---ELLKVMIHPDPERRPSAMAL 277

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 51/248 (20%), Positives = 83/248 (33%), Gaps = 56/248 (22%)

Query: 408 KDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM-MVFEYAPNGTLFEHI-- 464
                +     +K+I     +NH+N V   G   E        +  EY   G LF+ I  
Sbjct: 42  MKRAVDCPENIKKEICINKMLNHENVVKFYGHRREG---NIQYLFLEYCSGGELFDRIEP 98

Query: 465 HIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKL 518
            I   E        ++  G+ Y     H +   I H      N L      L E    K+
Sbjct: 99  DIGMPEPDAQRFFHQLMAGVVYL----HGIG--ITHRDIKPENLL------LDERDNLKI 146

Query: 519 SD--LSFWNEIAMAEMAATSKKLSS--------APS-------ASLESNVYNFGVLLFEM 561
           SD  L+      +       + L+         AP         +   +V++ G++L  M
Sbjct: 147 SDFGLA-----TVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAM 201

Query: 562 VTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPE 621
           + G LP+  D  S  D   +Y    +  ++         D   L     L+   +  +P 
Sbjct: 202 LAGELPW--DQPS--DSCQEYSDWKE--KKTYLNPWKKIDSAPL----ALLHKILVENPS 251

Query: 622 KRPTMRDI 629
            R T+ DI
Sbjct: 252 ARITIPDI 259

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 47.9 bits (115), Expect = 4e-06
 Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 23/157 (14%)

Query: 373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 431
           D    +G      V +    + G+E A   ++        ++ + +  ++     K+ H 
Sbjct: 9   DVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLS--ARDFQ-KLEREARICRKLQHP 65

Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--SEHLDWGMRLRIAMGMAYCLE 489
           N V L    +EE      +VF+    G LFE I  +E  SE        +I   +AYC  
Sbjct: 66  NIVRLHDSIQEESFHY--LVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYC-- 121

Query: 490 HMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD 520
             H     I H      N L +S     +  A KL+D
Sbjct: 122 --HSNG--IVHRNLKPENLLLASK---AKGAAVKLAD 151

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 48.0 bits (115), Expect = 5e-06
 Identities = 56/287 (19%), Positives = 92/287 (32%), Gaps = 77/287 (26%)

Query: 373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 431
            F  V+GS     V+       G   A+  +  + A       +     +I  L K+ H+
Sbjct: 12  IFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFR-----DSSLENEIAVLKKIKHE 66

Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--SEHLDWGMRLRIAMGMAYCLE 489
           N V L    E    +   +V +    G LF+ I  +   +E     +  ++   + Y   
Sbjct: 67  NIVTLEDIYESTTHYY--LVMQLVSGGELFDRILERGVYTEKDASLVIQQVLSAVKYL-- 122

Query: 490 HMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS-FWNEIAMAEMAATSKKLS 540
             H+    I H      N L  +     E+    ++D  LS       M+    T   + 
Sbjct: 123 --HENG--IVHRDLKPENLLYLTP---EENSKIMITDFGLSKMEQNGIMSTACGTPGYV- 174

Query: 541 SAPSASLESNVYNFGVLLFEMVTGRLPY--LVDNGSLEDWAA---DY--LSGVQPLQQFV 593
            AP                E++  + PY   VD      W+     Y  L G  P   F 
Sbjct: 175 -AP----------------EVLAQK-PYSKAVDC-----WSIGVITYILLCGYPP---FY 208

Query: 594 DPTLS-----------SFDEEQLETLGE----LIKSCVRADPEKRPT 625
           + T S            F+    + + E     I   +  DP +R T
Sbjct: 209 EETESKLFEKIKEGYYEFESPFWDDISESAKDFICHLLEKDPNERYT 255

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 15/109 (13%)

Query: 70  CS-DGKVVNLNLKDLCLEGTLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLD 127
           CS DG++      +L        ++ Q L   + ++L  N    +    F  LE+L++L+
Sbjct: 2   CSFDGRIAFYRFCNL-------TQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLE 54

Query: 128 FGHNNFSGPLPNDLGIN-HSLTILLLDNNDFVGSLSPEI----YKLQVL 171
            G       +  +   N  +L IL L ++     L P+     + L  L
Sbjct: 55  LGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFEL 102

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 3/83 (3%)

Query: 78  LNLKDLCLEGTLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 136
           L L       T+  E  ++L +++ + L ++    + P+ F  L  L  L       S  
Sbjct: 53  LELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA 112

Query: 137 LPNDLGINH--SLTILLLDNNDF 157
           +  D    +  +LT L L  N  
Sbjct: 113 VLKDGYFRNLKALTRLDLSKNQI 135

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 8e-06
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 5/82 (6%)

Query: 94  QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153
           ++L  +K + L  N  + I  E F  L+ L+VL+  +N       ++      +  + L 
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346

Query: 154 NNDFVGSLSPEIY----KLQVL 171
            N     +  + +    KLQ L
Sbjct: 347 KNHI-AIIQDQTFKFLEKLQTL 367

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.9 bits (114), Expect = 9e-06
 Identities = 14/80 (17%), Positives = 26/80 (32%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 137
           LNL    +          L +++ + L  N    +    F  L ++  +D   N+ +   
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354

Query: 138 PNDLGINHSLTILLLDNNDF 157
                    L  L L +N  
Sbjct: 355 DQTFKFLEKLQTLDLRDNAL 374

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 18/136 (13%)

Query: 50  LTSWRSCDTENNPCSWFGVECSDGKVVNL---NLKDLCLEGTLAPEIQSLTHIKSIILRN 106
           + S        N             +++L    L++L +   L      + H++ +IL  
Sbjct: 380 IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFL----LRVPHLQILILNQ 435

Query: 107 NSFSGIIPEG-FGELEELEVLDFGHNNFSGPLPNDLGIN-----HSLTILLLDNNDFVGS 160
           N FS    +    E   LE L  G N        +L  +       L +L L++N    S
Sbjct: 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-S 494

Query: 161 LSPEIY----KLQVLS 172
           L P ++     L+ LS
Sbjct: 495 LPPGVFSHLTALRGLS 510

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 2/79 (2%)

Query: 77  NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 136
              L+            + L+H++ + L +N  + + P  F  L  L  L    N  +  
Sbjct: 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV- 518

Query: 137 LPNDLGINHSLTILLLDNN 155
           L ++  +  +L IL +  N
Sbjct: 519 LSHND-LPANLEILDISRN 536

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.2 bits (107), Expect = 6e-05
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 6/93 (6%)

Query: 79  NLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEG-FGELEELEVLDFGHNNFSGPL 137
            L D  L+       ++L  +  + L  N    +     FG+L  L+ +DF  N      
Sbjct: 108 GLSDAVLKDGY---FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164

Query: 138 PNDL-GINH-SLTILLLDNNDFVGSLSPEIYKL 168
            ++L  +   +L+   L  N     +S +  K 
Sbjct: 165 EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 7e-04
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 94  QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153
             L  +  I L+ N  + I  + F  LE+L+ LD   N  +      +    S+  + L 
Sbjct: 335 YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLS 389

Query: 154 NNDF 157
            N  
Sbjct: 390 GNKL 393

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.4 bits (115), Expect = 5e-06
 Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 15/123 (12%)

Query: 50  LTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSF 109
               +     +N  +         ++  L   +  L  +L      L     + + +N  
Sbjct: 140 PPGLQELSVSDNQLASLPALP--SELCKLWAYNNQLT-SLPMLPSGLQ---ELSVSDNQL 193

Query: 110 SGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQ 169
           +  +P    EL +L      +N  +  LP        L  L++  N    SL     +L+
Sbjct: 194 A-SLPTLPSELYKLWAY---NNRLT-SLPALPS---GLKELIVSGNRL-TSLPVLPSELK 244

Query: 170 VLS 172
            L 
Sbjct: 245 ELM 247

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 10/95 (10%)

Query: 79  NLKDLCLEGTLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 137
           ++  L +       +      ++++ +  N  +  +P     L EL +      +     
Sbjct: 62  HITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALP 120

Query: 138 PNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 172
                    L  L +  N    SL      LQ LS
Sbjct: 121 SG-------LCKLWIFGNQL-TSLPVLPPGLQELS 147

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 39/162 (24%), Positives = 60/162 (37%), Gaps = 33/162 (20%)

Query: 373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNH 430
           D    +G      V +    + G+E A   ++           + Q   ++     K+ H
Sbjct: 32  DVKEELGKGAFSVVRRCVHKTTGLEFAAKIIN----TKKLSARDFQKLEREARICRKLQH 87

Query: 431 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--SE----HLDWGMRLRIAMGM 484
            N V L    +EE      +VF+    G LFE I  +E  SE    H    ++ +I   +
Sbjct: 88  PNIVRLHDSIQEESFHY--LVFDLVTGGELFEDIVAREFYSEADASHC---IQ-QILESI 141

Query: 485 AYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD 520
           AYC    H     I H      N L +S     +  A KL+D
Sbjct: 142 AYC----HSNG--IVHRNLKPENLLLASK---AKGAAVKLAD 174

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 48.1 bits (115), Expect = 7e-06
 Identities = 58/303 (19%), Positives = 93/303 (30%), Gaps = 97/303 (32%)

Query: 373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNH 430
                +G      V +   +  G E A   ++           + Q   ++      + H
Sbjct: 14  QLFEELGKGAFSVVRRCVKVLAGQEYAAMIIN----TKKLSARDHQKLEREARICRLLKH 69

Query: 431 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--SE----HLDWGMRLRIAMGM 484
            N V L     EE      ++F+    G LFE I  +E  SE    H    ++ +I   +
Sbjct: 70  PNIVRLHDSISEEGHHY--LIFDLVTGGELFEDIVAREYYSEADASHC---IQ-QILEAV 123

Query: 485 AYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LSFWNEIAMAEMAATS 536
            +C    HQ+   + H      N L +S     +  A KL+D  L+        E+    
Sbjct: 124 LHC----HQMG--VVHRNLKPENLLLASK---LKGAAVKLADFGLA-------IEVEGEQ 167

Query: 537 KKLSS--------APSASLESNVYNFGVLLFEMVTGRLPY--LVDNGSLEDWAAD---Y- 582
           +            +P                E++    PY   VD      WA     Y 
Sbjct: 168 QAWFGFAGTPGYLSP----------------EVLRKD-PYGKPVDL-----WACGVILYI 205

Query: 583 -LSGVQPLQQFVDPTLS-----------SFDEEQLETLGE----LIKSCVRADPEKRPTM 626
            L G  P   F D                F   + +T+      LI   +  +P KR T 
Sbjct: 206 LLVGYPP---FWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRITA 262

Query: 627 RDI 629
            + 
Sbjct: 263 AEA 265

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 47.6 bits (114), Expect = 7e-06
 Identities = 53/288 (18%), Positives = 90/288 (31%), Gaps = 81/288 (28%)

Query: 377 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH-KNFV 434
            +G      V +    S G E A   +         ++   +   +I  L         +
Sbjct: 36  ELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRG---QDCRAEILHEIAVLELAKSCPRVI 92

Query: 435 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLD-----WGMRLRIAMGMAYCLE 489
           NL    E        ++ EYA  G +F     + +E +        ++ +I  G+ Y   
Sbjct: 93  NLHEVYENTSEII--LILEYAAGGEIFSLCLPELAEMVSENDVIRLIK-QILEGVYYL-- 147

Query: 490 HMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMAEMAATSKKL 539
             HQ N  I H      N L SS          K+ D  +S    +   + E+  T + L
Sbjct: 148 --HQNN--IVHLDLKPQNILLSSI---YPLGDIKIVDFGMSRKIGHACELREIMGTPEYL 200

Query: 540 SSAPSASLESNVYNF-------GVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQF 592
             AP   L  +           G++ + +                     L+   P   F
Sbjct: 201 --APEI-LNYDPITTATDMWNIGIIAYML---------------------LTHTSP---F 233

Query: 593 VDPTLS-----------SFDEEQLETLGE----LIKSCVRADPEKRPT 625
           V                 + EE   ++ +     I+S +  +PEKRPT
Sbjct: 234 VGEDNQETYLNISQVNVDYSEETFSSVSQLATDFIQSLLVKNPEKRPT 281

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.8 bits (114), Expect = 9e-06
 Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
           +L+ L LE     ++  E    L  +  + LR+ + + I    F  L  L+VL+  H  +
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212

Query: 134 SGPLPNDLGINHSLTILLLDNNDF 157
              +  +     +LT L + + + 
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNL 236

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 12/78 (15%), Positives = 26/78 (33%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 137
           L +       T+ P      ++ S+ + + + + +       L  L  L+  +N  S   
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE 264

Query: 138 PNDLGINHSLTILLLDNN 155
            + L     L  + L   
Sbjct: 265 GSMLHELLRLQEIQLVGG 282

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 13/106 (12%)

Query: 63  CSWFG--VECSDGKVVNL------NLKDLCLEGTLAPEIQS-----LTHIKSIILRNNSF 109
           CS     V C   + V +        + L L       +         H++ + L  N  
Sbjct: 9   CSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV 68

Query: 110 SGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN 155
           S + P  F  L  L  L    N              +LT L +  N
Sbjct: 69  SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 5/100 (5%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
           NLK L +       ++      L  ++ + L   + + I  E    L  L VL   H N 
Sbjct: 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188

Query: 134 SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
           +          + L +L + +  ++ +++P       L+ 
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS 228

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.2 bits (97), Expect = 9e-04
 Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 10/105 (9%)

Query: 77  NLNLKDLCLEG----TLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 131
            LNL  L +       +    ++ L +++ + L  N  S I      EL  L+ +     
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG 282

Query: 132 NFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIY----KLQVLS 172
             +   P      + L +L +  N    +L   ++     L+ L 
Sbjct: 283 QLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLI 326

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 61/301 (20%), Positives = 97/301 (32%), Gaps = 83/301 (27%)

Query: 373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAK----DWPKNLEVQFRKKIDTLSK 427
           +   ++G      V +        E AV  + V        +  + L     K++D L K
Sbjct: 20  EPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRK 79

Query: 428 VN-HKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESE--HLDWGMRLRI 480
           V+ H N + L    E    F   +VF+    G LF+++     + E E   +   MR  +
Sbjct: 80  VSGHPNIIQLKDTYETNTFFF--LVFDLMKKGELFDYLTEKVTLSEKETRKI---MR-AL 133

Query: 481 AMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMA 530
              +       H+LN  I H      N L      L +D   KL+D   S        + 
Sbjct: 134 LEVICAL----HKLN--IVHRDLKPENIL------LDDDMNIKLTDFGFSCQLDPGEKLR 181

Query: 531 EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPY--LVDNGSLEDWAAD---Y--L 583
           E+  T   L  AP    E       ++   M      Y   VD      W+     Y  L
Sbjct: 182 EVCGTPSYL--AP----E-------IIECSMNDNHPGYGKEVDM-----WSTGVIMYTLL 223

Query: 584 SGVQPLQQFVDPTLS-----------SFDEEQLETLGE----LIKSCVRADPEKRPTMRD 628
           +G  P   F                  F   + +   +    L+   +   P+KR T  +
Sbjct: 224 AGSPP---FWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEE 280

Query: 629 I 629
            
Sbjct: 281 A 281

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 10/101 (9%)

Query: 77  NLNLKDLCLEGTLAPEIQSLTHIKSIILRNN---SFSGIIPEGFGELEELEVLDFGHNNF 133
           N  L +  L   L P       ++ + LRN    + SG+         +L+ LD  HN+ 
Sbjct: 183 NPELGERGLISALCP--LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL 240

Query: 134 SGPLPNDLGINH--SLTILLLDNNDFVGSLSPEIY-KLQVL 171
                     +    L  L L        +   +  KL VL
Sbjct: 241 RD-AAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKLSVL 279

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.1 bits (104), Expect = 7e-05
 Identities = 20/117 (17%), Positives = 33/117 (28%), Gaps = 9/117 (7%)

Query: 60  NNPCSWFGVECSDGKVVNLNLKDLCLEGTLA--PEIQSL--THIKSIILRNNSFSGIIPE 115
                   +E +   +  LNL+++      A   E+Q      +K + +          E
Sbjct: 108 TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167

Query: 116 GFGELEELEVLDFGHNNFSGPLPND----LGINHSLTILLLDNNDFVGSLSPEIYKL 168
                  L  LD   N   G              +L +L L N     + S     L
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM-ETPSGVCSAL 223

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 36/254 (14%), Positives = 78/254 (30%), Gaps = 47/254 (18%)

Query: 403 SVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM-MVFEYAPNGTLF 461
               + DWP +           + +++  +  N +G  +   P   + +  +      L 
Sbjct: 90  LKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLK 149

Query: 462 EHI-HIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD 520
           + +      E  + G+ L I + +A  +E +H     + H  L  S +  T D   K+ D
Sbjct: 150 DWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHSKG--LMHRDLKPSNIFFTMDDVVKVGD 207

Query: 521 --LSFWNEIAMAEMAATSKKLSSAPSAS------------LESNVYNF-------GVLLF 559
             L    +    E    +   + A                +  N Y+        G++LF
Sbjct: 208 FGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILF 267

Query: 560 EMV----TGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSC 615
           E++    T      +                  +    +        ++      +++  
Sbjct: 268 ELLYSFSTQMERVRI------------------ITDVRNLKFPLLFTQKYPQEHMMVQDM 309

Query: 616 VRADPEKRPTMRDI 629
           +   P +RP   DI
Sbjct: 310 LSPSPTERPEATDI 323

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 3/84 (3%)

Query: 77  NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS-- 134
            L++    L   L+     L  +K I + N+    +       L+ LE LD   N     
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEE 349

Query: 135 -GPLPNDLGINHSLTILLLDNNDF 157
                   G   SL  L+L  N  
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHL 373

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 10/104 (9%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
           NL+ L L+     T+  +   SL  ++ + L +N  S +    FG L  L+ L+   N +
Sbjct: 51  NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110

Query: 134 SG-PLPNDLGINHSLTILLLDNNDFVGSLSPE----IYKLQVLS 172
               + +      +L  L + N +    +       +  L  L 
Sbjct: 111 QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 10/79 (12%), Positives = 26/79 (32%), Gaps = 1/79 (1%)

Query: 78  LNLKDLCLEGTLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 136
           L + ++     +       LT +  + ++  S      +    + ++  L    +  +  
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187

Query: 137 LPNDLGINHSLTILLLDNN 155
           L     I  S+  L L + 
Sbjct: 188 LEIFADILSSVRYLELRDT 206

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 95  SLTHIKSIILRNNSFSGI--IPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152
           +   +++++L  N    +    E    L+ L  LD   N F  P+P+       +  L L
Sbjct: 359 AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNL 417

Query: 153 DNNDFVGSLSPEI-YKLQVL 171
            +      +   I   L+VL
Sbjct: 418 SSTGIR-VVKTCIPQTLEVL 436

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 11/81 (13%), Positives = 21/81 (25%), Gaps = 3/81 (3%)

Query: 79  NLKDLCLEGTLAPEIQS-LTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 137
            L+ L +           L  ++ + +  N    +          L V+    N      
Sbjct: 432 TLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSVP 489

Query: 138 PNDLGINHSLTILLLDNNDFV 158
                   SL  + L  N + 
Sbjct: 490 DGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 22/108 (20%), Positives = 35/108 (32%), Gaps = 10/108 (9%)

Query: 68  VECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLD 127
           + C    V +   +      T  P       +KS+ L  N  + I          L+VL 
Sbjct: 2   LSCDASGVCDGRSRSF----TSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLI 56

Query: 128 FGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIY----KLQVL 171
              +  +    +      SL  L L +N    SLS   +     L+ L
Sbjct: 57  LKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYL 103

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 53/283 (18%), Positives = 100/283 (35%), Gaps = 61/283 (21%)

Query: 373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 431
              N IG    G V         +  A   +     +D       +F+++I+ +  ++H 
Sbjct: 12  TLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVED-----VDRFKQEIEIMKSLDHP 66

Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESE--HLDWGMRLRIAMGMA 485
           N + L    E+       +V E    G LFE +      +ES+   +   M+  +   +A
Sbjct: 67  NIIRLYETFEDNTDIY--LVMELCTGGELFERVVHKRVFRESDAARI---MK-DVLSAVA 120

Query: 486 YCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMAEMAAT 535
           YC    H+LN  +AH      N+L  +    + D   KL D  L+  F     M     T
Sbjct: 121 YC----HKLN--VAHRDLKPENFLFLTD---SPDSPLKLIDFGLAARFKPGKMMRTKVGT 171

Query: 536 SKKLSSAP-----SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQ 590
              +  +P         E + ++ GV+++ ++ G  P+                    + 
Sbjct: 172 PYYV--SPQVLEGLYGPECDEWSAGVMMYVLLCGYPPFSAPT-------------DSEVM 216

Query: 591 QFVDPTLSSFDEEQLETLGE----LIKSCVRADPEKRPTMRDI 629
             +     +F E+    +      LI+  +   P++R T    
Sbjct: 217 LKIREGTFTFPEKDWLNVSPQAESLIRRLLTKSPKQRITSLQA 259

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 10/99 (10%)

Query: 79  NLKDLCLEGTLAPEIQ------SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 132
           ++K+L L+ + + E +          ++ +   N   + I      +L +L+ L+   N 
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNR 75

Query: 133 FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVL 171
            SG L        +LT L L  N  +  LS  I  L+ L
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGN-KIKDLS-TIEPLKKL 112

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 7/100 (7%)

Query: 74  KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
            V +L+L    L   L P + +L  ++ +   +N+   +  +G   L  L+ L   +N  
Sbjct: 464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRL 520

Query: 134 SG-PLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 172
                   L     L +L L  N        E  + ++  
Sbjct: 521 QQSAAIQPLVSCPRLVLLNLQGNSLC---QEEGIQERLAE 557

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 54/271 (19%), Positives = 90/271 (33%), Gaps = 58/271 (21%)

Query: 378 IGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNL 436
           IG    G V       +G ++AV  + +   +            ++  +    H N V +
Sbjct: 53  IGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQR-----RELLFNEVVIMRDYQHFNVVEM 107

Query: 437 IG-FCEEEEPFTRMMVFEYAPNGTL---FEHIHIKESEHLDWGMRLRIAMGMAYC---LE 489
              +   EE +  M   E+   G L      + + E +         IA         L 
Sbjct: 108 YKSYLVGEELWVLM---EFLQGGALTDIVSQVRLNEEQ---------IATVCEAVLQALA 155

Query: 490 HMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS-------- 541
           ++H     + H  + S ++ LT D   KLSD  F      A+++    K  S        
Sbjct: 156 YLHAQG--VIHRDIKSDSILLTLDGRVKLSDFGF-----CAQISKDVPKRKSLVGTPYWM 208

Query: 542 APSASLESNVYNF-------GVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 594
           AP     S  Y         G+++ EMV G  PY     S     A       P  +  +
Sbjct: 209 APEVISRSL-YATEVDIWSLGIMVIEMVDGEPPYF----SDSPVQAMKRLRDSPPPKLKN 263

Query: 595 PTLSSFDEEQLETLGELIKSCVRADPEKRPT 625
               S        L + ++  +  DP++R T
Sbjct: 264 SHKVS------PVLRDFLERMLVRDPQERAT 288

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 59/271 (21%), Positives = 99/271 (36%), Gaps = 58/271 (21%)

Query: 378 IGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNL 436
           IG    GTVY    ++ G E+A+  +++       K L +    +I  + +  + N VN 
Sbjct: 28  IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK--KELIIN---EILVMRENKNPNIVNY 82

Query: 437 IG-FCEEEEPFTRMMVFEYAPNGTLFEHIH---IKESEHLDWGMRLRIAMGMAYC---LE 489
           +  +   +E +  M   EY   G+L + +    + E +         IA     C   LE
Sbjct: 83  LDSYLVGDELWVVM---EYLAGGSLTDVVTETCMDEGQ---------IAAVCRECLQALE 130

Query: 490 HMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS-------- 541
            +H     + H  + S  + L  D + KL+D  F      A++     K S+        
Sbjct: 131 FLHSNQ--VIHRDIKSDNILLGMDGSVKLTDFGF-----CAQITPEQSKRSTMVGTPYWM 183

Query: 542 APSASLESNVYNF-------GVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 594
           AP        Y         G++  EM+ G  PYL    +     A YL       +  +
Sbjct: 184 APEVVTRKA-YGPKVDIWSLGIMAIEMIEGEPPYL----NENPLRALYLIATNGTPELQN 238

Query: 595 PTLSSFDEEQLETLGELIKSCVRADPEKRPT 625
           P   S          + +  C+  D EKR +
Sbjct: 239 PEKLS------AIFRDFLNRCLEMDVEKRGS 263

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 41/276 (14%), Positives = 79/276 (28%), Gaps = 65/276 (23%)

Query: 262 DSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSHQKSGGSSSKHIAILGGVIGGAI 321
           +             P  N+         +    S  ++  +                   
Sbjct: 16  NKERRRARREIRHLPNLNREQRRAFIRSLRDDPSQSANLLAEAKKL-------------- 61

Query: 322 LLVATVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSS 381
                           +  +P  T             +P    ++      D  +VIG  
Sbjct: 62  ----------------NDAQPKGTENLYFQSMGPEDELPDWAAAKEFYQKYDPKDVIGRG 105

Query: 382 PIGTVYKGT-LSNGVEIAVASVS---VASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNL 436
               V +    + G E AV  +       + +  + +    R++   L +V  H + + L
Sbjct: 106 VSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITL 165

Query: 437 IGFCEEEEPFTRMMVFEYAPNGTLFEHI----HIKESE--HLDWGMRLRIAMGMAYCLEH 490
           I   E        +VF+    G LF+++     + E E   +   MR  +   +++    
Sbjct: 166 IDSYESSSFMF--LVFDLMRKGELFDYLTEKVALSEKETRSI---MR-SLLEAVSFL--- 216

Query: 491 MHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD 520
            H  N  I H      N L      L ++   +LSD
Sbjct: 217 -HANN--IVHRDLKPENIL------LDDNMQIRLSD 243

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 47/299 (15%), Positives = 101/299 (33%), Gaps = 51/299 (17%)

Query: 355 FVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKN 413
            +   P+ K+  +    +    V+G    G V +      G + A+  +          +
Sbjct: 14  VLFQGPEPKKYAVTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLY--------DS 65

Query: 414 LEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRM--MVFEYAPNGTLFEHIHIKESE 470
            +   R+++D   +     + V ++   E      R   ++ E    G LF  I  +  +
Sbjct: 66  PKA--RQEVDHHWQASGGPHIVCILDVYENMHHGKRCLLIIMECMEGGELFSRIQERGDQ 123

Query: 471 HLDWGMRLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSFW 524
                    I   +   ++ +H  N  IAH      N L +S     +D   KL+D  F 
Sbjct: 124 AFTEREAAEIMRDIGTAIQFLHSHN--IAHRDVKPENLLYTSK---EKDAVLKLTDFGFA 178

Query: 525 NEIAMAEMAATSKKLSSAPSAS---LESNVYN-------FGVLLFEMVTGRLPYLVDNGS 574
            E     +        +    +   L    Y+        GV+++ ++ G  P+      
Sbjct: 179 KETTQNAL---QTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPF------ 229

Query: 575 LEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGE----LIKSCVRADPEKRPTMRDI 629
              ++    +    +++ +      F   +   + E    LI+  ++ DP +R T+   
Sbjct: 230 ---YSNTGQAISPGMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQF 285

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 35/170 (20%)

Query: 423 DTLSKVNHKNFVNLIG-FCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIA 481
           D +S+++H  FV L   F ++E+ +       YA NG L ++I  K     +   R   A
Sbjct: 82  DVMSRLDHPFFVKLYFTFQDDEKLY---FGLSYAKNGELLKYIR-KIGSFDETCTRFYTA 137

Query: 482 -MGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAA 534
            +  A  LE++H     I H      N L +  +H+      +++D      ++     A
Sbjct: 138 EIVSA--LEYLHGKG--IIHRDLKPENILLNEDMHI------QITDFGTAKVLSPESKQA 187

Query: 535 TSKKLSS-----APSASLESNVYN-------FGVLLFEMVTGRLPYLVDN 572
            +          +P   L              G +++++V G  P+   N
Sbjct: 188 RANSFVGTAQYVSPEL-LTEKSACKSSDLWALGCIIYQLVAGLPPFRAGN 236

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 44.9 bits (107), Expect = 4e-05
 Identities = 31/165 (18%), Positives = 58/165 (35%), Gaps = 36/165 (21%)

Query: 373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 431
            F   +GS   G V+     S+G+E  + +++    KD  +    Q   +I+ L  ++H 
Sbjct: 25  IFKRKLGSGAFGDVHLVEERSSGLERVIKTIN----KDRSQVPMEQIEAEIEVLKSLDHP 80

Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWG----------MRLRIA 481
           N + +    E+       +V E    G L E I   ++                M+ ++ 
Sbjct: 81  NIIKIFEVFEDYHNMY--IVMETCEGGELLERIVSAQARG---KALSEGYVAELMK-QMM 134

Query: 482 MGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD 520
             +AY     H  +  + H      N L       +     K+ D
Sbjct: 135 NALAYF----HSQH--VVHKDLKPENILFQDT---SPHSPIKIID 170

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 11/106 (10%)

Query: 76  VNLNLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 132
            N+N+K+  + G           ++    +   NN  +  + E  G L ELE L    N 
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359

Query: 133 FSGPLPNDLGINH---SLTILLLDNNDFVGSLSPEIY----KLQVL 171
               L     +     SL  L +  N                L  L
Sbjct: 360 LKE-LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 53/296 (17%), Positives = 95/296 (32%), Gaps = 95/296 (32%)

Query: 377 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKN-------LEVQFRKKIDTLSKV 428
           ++G    GTV+ G  L++ +++A+  +       W          LEV    K+      
Sbjct: 38  LLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGG- 96

Query: 429 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGT-LFEHI----HIKESE--HLDWGMRLRIA 481
            H   + L+ + E +E F  M+V E       LF++I     + E            ++ 
Sbjct: 97  -HPGVIRLLDWFETQEGF--MLVLERPLPAQDLFDYITEKGPLGEGPSRCF---FG-QVV 149

Query: 482 MGMAYCLEHMHQLNPPIAH-------------------------NYLNSSAVHL---TED 513
             + +C    H     + H                           L+         T  
Sbjct: 150 AAIQHC----HSRG--VVHRDIKDENILIDLRRGCAKLIDFGSGALLHDEPYTDFDGTRV 203

Query: 514 YAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG 573
           Y+               E    S+    A  A     V++ G+LL++MV G +P+     
Sbjct: 204 YSP-------------PEW--ISRHQYHALPA----TVWSLGILLYDMVCGDIPF----- 239

Query: 574 SLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
              +   + L       +   P   S D         LI+ C+   P  RP++ +I
Sbjct: 240 ---ERDQEILEA-----ELHFPAHVSPDCCA------LIRRCLAPKPSSRPSLEEI 281

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 54/291 (18%), Positives = 111/291 (38%), Gaps = 61/291 (20%)

Query: 372 EDFSN--VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV 428
           +D+    VIGS     V          ++A+  +++   +    +++ +  K+I  +S+ 
Sbjct: 15  DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQT---SMD-ELLKEIQAMSQC 70

Query: 429 NHKNFVNLIG-FCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLR---IAMGM 484
           +H N V+    F  ++E +  M   +    G++ + I    ++       L    IA  +
Sbjct: 71  HHPNIVSYYTSFVVKDELWLVM---KLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATIL 127

Query: 485 AYC---LEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS 541
                 LE++H+      H  + +  + L ED + +++D      +A       +K   +
Sbjct: 128 REVLEGLEYLHKNG--QIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKT 185

Query: 542 --------APSASLESNVYN-------FGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV 586
                   AP    +   Y+       FG+   E+ TG  PY                  
Sbjct: 186 FVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPY---------------HKY 230

Query: 587 QPLQ------QFVDPTLSSFDEEQLE------TLGELIKSCVRADPEKRPT 625
            P++      Q   P+L +  +++        +  ++I  C++ DPEKRPT
Sbjct: 231 PPMKVLMLTLQNDPPSLETGVQDKEMLKKYGKSFRKMISLCLQKDPEKRPT 281

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 8/86 (9%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
           NL  L L       L+P    SL+ ++ + + +N+F  +    +  L  L+VLD+  N+ 
Sbjct: 176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

Query: 134 SGPLPNDL--GINHSLTILLLDNNDF 157
                         SL  L L  NDF
Sbjct: 236 MT-SKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 32/109 (29%)

Query: 94  QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN---------FSGPLPN----D 140
              T +K + L  N     +   F  LE+LE LDF H+N         F   L N    D
Sbjct: 75  FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLD 132

Query: 141 LGINH-------------SLTILLLDNNDFVGSLSPEI----YKLQVLS 172
           +   H             SL +L +  N F  +  P+I      L  L 
Sbjct: 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 6/82 (7%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
           +L +L L+G     +     + L ++  + L  NS S +          L  L   +N  
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252

Query: 134 SGPLPNDLGINHSLTILLLDNN 155
              +P  L  +  + ++ L NN
Sbjct: 253 VK-VPGGLADHKYIQVVYLHNN 273

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.1 bits (97), Expect = 9e-04
 Identities = 29/113 (25%), Positives = 43/113 (38%), Gaps = 15/113 (13%)

Query: 54  RSCDTENNPCSWFGVECSDGKVVNL------NLKDLCLEGTLAPEIQS-----LTHIKSI 102
             C      C    V+CSD  +  +      +   L L+     EI+      L ++ ++
Sbjct: 23  PVCPFRCQ-CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTL 81

Query: 103 ILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN 155
           IL NN  S I P  F  L +LE L    N     LP  +    +L  L +  N
Sbjct: 82  ILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELRVHEN 131

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 33/183 (18%), Positives = 66/183 (36%), Gaps = 25/183 (13%)

Query: 348 SGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVAS 406
             Q  +  V    ++K++ +    +  S V+G    G V +        + A+  +    
Sbjct: 40  PQQFPQFHVKSGLQIKKNAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQ--- 96

Query: 407 AKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRM--MVFEYAPNGTLFEH 463
             D PK      R++++   +     + V ++   E      +   +V E    G LF  
Sbjct: 97  --DCPK-----ARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSR 149

Query: 464 IHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAAK 517
           I  +  +         I   +   ++++H +N  IAH      N L +S      +   K
Sbjct: 150 IQDRGDQAFTEREASEIMKSIGEAIQYLHSIN--IAHRDVKPENLLYTSK---RPNAILK 204

Query: 518 LSD 520
           L+D
Sbjct: 205 LTD 207

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 17/118 (14%), Positives = 33/118 (27%), Gaps = 14/118 (11%)

Query: 63  CSWF-GVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEG-FGEL 120
                G+ C+    ++               +    ++  + + N      +       L
Sbjct: 7   PHGSSGLRCTRDGALDSL-----------HHLPGAENLTELYIENQQHLQHLELRDLRGL 55

Query: 121 EELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDE 178
            EL  L    +      P+       L+ L L  N    SLS +  +   L E  +  
Sbjct: 56  GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSG 112

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 27/117 (23%), Positives = 41/117 (35%), Gaps = 18/117 (15%)

Query: 62  PCSWFGVECS-DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGEL 120
                   CS  G       + L       PE+    H+  + L  NS + +    F  L
Sbjct: 5   TSE-----CSVIGYNAICINRGL----HQVPEL--PAHVNYVDLSLNSIAELNETSFSRL 53

Query: 121 EELEVLDFGHNNFSGPLPNDLGIN-HSLTILLLDNNDFVGSLSPEI----YKLQVLS 172
           ++L+ L          + N+      SL IL LD N F+  L          L+VL+
Sbjct: 54  QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLT 109

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 48/252 (19%), Positives = 77/252 (30%), Gaps = 70/252 (27%)

Query: 412 KNLEVQFRKKIDTLSKVNHKNFVNLIGFCEE--EEPFTRMMVFEYAPNGTLFEHI----H 465
             ++   +++I     + H N V       E    P    ++ EYA  G L+E I     
Sbjct: 57  AAIDENVQREIINHRSLRHPNIVRFK----EVILTPTHLAIIMEYASGGELYERICNAGR 112

Query: 466 IKESEHLDWGMRL--RIAMGMAYCLEHMHQLNPPIAH------NYLNSSAVHLTEDYAA- 516
             E E          ++  G++YC  H  Q    I H      N L      L    A  
Sbjct: 113 FSEDE----ARFFFQQLLSGVSYC--HSMQ----ICHRDLKLENTL------LDGSPAPR 156

Query: 517 -KLSDLSFWNEIAMAEMAAT-------------SKKLSSAPSA---SLESNVYNFGVLLF 559
            K+ D  +     +     +              ++      A   S        GV L+
Sbjct: 157 LKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSC-------GVTLY 209

Query: 560 EMVTGRLPYLVDNGSLEDWAADYLSGVQPLQ--QFVDPTLSSFDEEQLETLGELIKSCVR 617
            M+ G  P+            DY   +Q +   ++  P       E       LI     
Sbjct: 210 VMLVGAYPFEDPEEP-----RDYRKTIQRILSVKYSIPDDIRISPE----CCHLISRIFV 260

Query: 618 ADPEKRPTMRDI 629
           ADP  R ++ +I
Sbjct: 261 ADPATRISIPEI 272

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
            L +L L G     + P   Q L H++ + +  +    I    F  L+ L  ++  HNN 
Sbjct: 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267

Query: 134 SGPLPNDLGINHSLTILLLDNN 155
           +    +     H L  + L +N
Sbjct: 268 TLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 8/101 (7%)

Query: 79  NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 135
           NL+ L L        P +  L  +  + L  N  S I P  F  L  L+ L    +    
Sbjct: 186 NLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245

Query: 136 PLPNDLGINHSLTILLLDNNDFVGSLSPEIY----KLQVLS 172
              N      SL  + L +N+    L  +++     L+ + 
Sbjct: 246 IERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIH 285

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 39/311 (12%), Positives = 93/311 (29%), Gaps = 83/311 (26%)

Query: 379 GSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLI 437
           G   + TV        G  + V  +++ +  +  + +    + ++      NH N V   
Sbjct: 36  GFEDLMTVNLARYKPTGEYVTVRRINLEACSN--EMVT-FLQGELHVSKLFNHPNIVPYR 92

Query: 438 G-FCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYC------LEH 490
             F  + E +   +V  +   G+  + I     + ++    L IA            L++
Sbjct: 93  ATFIADNELW---VVTSFMAYGSAKDLICTHFMDGMN---ELAIA---YILQGVLKALDY 143

Query: 491 MHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLE-- 548
           +H +     H  + +S + ++ D    LS L          M +  ++            
Sbjct: 144 IHHMG--YVHRSVKASHILISVDGKVYLSGLRS-----NLSMISHGQRQRVVHDFPKYSV 196

Query: 549 ---------------------SNVYNFGVLLFEMVTGRLPY------------------- 568
                                S++Y+ G+   E+  G +P+                   
Sbjct: 197 KVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPC 256

Query: 569 LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLG--------------ELIKS 614
           L+D  ++                 +  +L++                          ++ 
Sbjct: 257 LLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQ 316

Query: 615 CVRADPEKRPT 625
           C++ +P+ RP+
Sbjct: 317 CLQRNPDARPS 327

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 57/292 (19%), Positives = 92/292 (31%), Gaps = 79/292 (27%)

Query: 373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 431
           +  + +G      VY+          A+  +     K      +   R +I  L +++H 
Sbjct: 56  EVESELGRGATSIVYRCKQKGTQKPYALKVLK----K---TVDKKIVRTEIGVLLRLSHP 108

Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--SEHLDWGMRLRIAMGMAYCLE 489
           N + L    E     +  +V E    G LF+ I  K   SE        +I   +AY   
Sbjct: 109 NIIKLKEIFETPTEIS--LVLELVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYL-- 164

Query: 490 HMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSD--LS--FWNEIAMAEMAATSKKL 539
             H+    I H      N L ++      D   K++D  LS    +++ M  +  T    
Sbjct: 165 --HENG--IVHRDLKPENLLYATP---APDAPLKIADFGLSKIVEHQVLMKTVCGTPGYC 217

Query: 540 SSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLED-WAA---DY--LSGVQPLQQFV 593
             AP    E       +L          Y    G   D W+     Y  L G +P   F 
Sbjct: 218 --AP----E-------ILR------GCAY----GPEVDMWSVGIITYILLCGFEP---FY 251

Query: 594 DPTLS------------SFDEEQLETLGE----LIKSCVRADPEKRPTMRDI 629
           D                 F     + +      L++  +  DP+KR T    
Sbjct: 252 DERGDQFMFRRILNCEYYFISPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQA 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 79  NLKDLCLEG----TLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
            L++L + G     + P     L+ +K + + N+  S I    F  L  L  L+  HNN 
Sbjct: 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278

Query: 134 SGPLPNDLGINHSLTILLLDNN 155
           S    +       L  L L +N
Sbjct: 279 SSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 8/101 (7%)

Query: 79  NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 135
           NLK L L        P +  L  ++ + +  N F  I P  F  L  L+ L   ++  S 
Sbjct: 197 NLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256

Query: 136 PLPNDLGINHSLTILLLDNNDFVGSLSPEIY----KLQVLS 172
              N      SL  L L +N+   SL  +++     L  L 
Sbjct: 257 IERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELH 296

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.3 bits (97), Expect = 8e-04
 Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 6/83 (7%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
           +L  L L       +     + L+ ++ + LRNN    I    F  +  L  LD G    
Sbjct: 124 SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK 183

Query: 134 SGPLPNDLGIN-HSLTILLLDNN 155
              +         +L  L L   
Sbjct: 184 LEYISEGAFEGLFNLKYLNLGMC 206

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 6/82 (7%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
            L +L L+      +  E     + +  + L +N    I       L  L  L   +N  
Sbjct: 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253

Query: 134 SGPLPNDLGINHSLTILLLDNN 155
           S  +P  L     L ++ L  N
Sbjct: 254 SR-VPAGLPDLKLLQVVYLHTN 274

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 29/136 (21%)

Query: 373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSK-VNH 430
           +    IG        +    +  +E AV  +         K+      ++I+ L +   H
Sbjct: 25  EVKEDIGVGSYSVCKRCIHKATNMEFAVKIID--------KSKR-DPTEEIEILLRYGQH 75

Query: 431 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--SE----HLDWGMRLRIAMGM 484
            N + L    ++ +     +V E    G L + I  ++  SE     +   +   I   +
Sbjct: 76  PNIITLKDVYDDGKYVY--VVTELMKGGELLDKILRQKFFSEREASAV---LF-TITKTV 129

Query: 485 AYCLEHMHQLNPPIAH 500
            Y     H     + H
Sbjct: 130 EYL----HAQG--VVH 139

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 16/117 (13%), Positives = 33/117 (28%), Gaps = 27/117 (23%)

Query: 69  ECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDF 128
           EC   +   +  KD+       P +      +++ L       I    F  L  +  +  
Sbjct: 9   ECHQEEDFRVTCKDI----QRIPSL--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYV 62

Query: 129 GHNN---------FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEI----YKLQVLS 172
             +          F   L         +T + + N   +  + P+       L+ L 
Sbjct: 63  SIDVTLQQLESHSFYN-LSK-------VTHIEIRNTRNLTYIDPDALKELPLLKFLG 111

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 18/83 (21%), Positives = 26/83 (31%), Gaps = 8/83 (9%)

Query: 79  NLKDLCLEGTLAPEI---QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 135
           NL+ L L       +     L  +K + L  N   G +     +L  L  L+   N    
Sbjct: 50  NLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD 109

Query: 136 PLPND---LGINHSLTILLLDNN 155
              +    L     L  L L N 
Sbjct: 110 --ISTLEPLKKLECLKSLDLFNC 130

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 25/136 (18%), Positives = 46/136 (33%), Gaps = 9/136 (6%)

Query: 77  NLNLKDLCLEGTLAPEI---QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
           +  L  L L+     +      L +++ + +RNN    I     G L +LEVLD   N  
Sbjct: 105 SACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEI 162

Query: 134 SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSC-- 191
           +      L     +  + L     V        +L + +  +  +G+  S          
Sbjct: 163 TNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSY 220

Query: 192 YERSIKWNGVLDEDTV 207
            +  + W   +  D V
Sbjct: 221 VDGCVLWELPVYTDEV 236

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	664
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
3uqc_A	286	Probable conserved transmembrane protein; structur	100.0
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
2dyl_A	318	Dual specificity mitogen-activated protein kinase	100.0
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	100.0
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	100.0
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	100.0
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	100.0
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	100.0
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.98
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.97
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.92
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.88
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.87
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.86
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.85
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.82
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.79
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.66
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.62
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.62
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.61
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.6
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.58
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.58
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.56
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.55
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.52
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.51
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.51
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.5
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.49
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.47
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.47
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.47
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.46
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.44
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.44
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.44
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.43
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.42
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.42
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.42
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.41
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.41
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.41
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.4
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.4
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.39
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.38
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.38
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.37
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.35
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.35
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.34
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.34
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.34
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.34
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.33
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.32
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.32
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.32
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.31
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.31
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.31
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.3
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.3
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.3
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.3
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.29
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.29
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.29
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.29
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.28
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.26
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.26
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.26
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.26
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.26
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.25
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.23
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.22
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.2
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.2
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.18
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.17
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.16
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.15
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.12
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.1
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.1
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.1
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.1
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.07
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.03
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.03
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.02
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.02
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.02
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.0
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.99
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.98
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	98.98
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.98
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.97
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.96
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.96
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.95
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.94
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.92
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.91
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.91
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.9
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.89
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.83
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.82
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.67
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.6
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.58
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.54
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.48
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.47
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.43
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.42
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.32
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.18
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.18
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.17
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.17
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	98.05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.03
3ats_A	357	Putative uncharacterized protein; hypothetical pro	97.96
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.74
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.69
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.67
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	97.64
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.63
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.59
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	97.56
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.55
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	97.42
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.21
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.17
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	96.96
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	96.66
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	96.63
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	96.43
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.3
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	96.23
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	96.19
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.13
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.05
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	96.03
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.0
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	95.98
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.82
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	95.77
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.57
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.16
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	94.31
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	93.91
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	91.98
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	90.87
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	90.22
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	89.88
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	89.83
3mes_A	424	Choline kinase; malaria, structural genomics, stru	89.07
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	88.09
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	87.51
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	87.31
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	85.23
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	84.0
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	82.21
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	80.2

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=1.7e-53  Score=440.08  Aligned_cols=254  Identities=22%  Similarity=0.372  Sum_probs=207.3

Q ss_pred             HHHHHHHhhhhcccccCCCeEEEEEEEC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEE
Q 006019          365 SELEAACEDFSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIG  438 (664)
Q Consensus       365 ~el~~~~~~~~~~iG~G~~G~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g  438 (664)
                      .|+...+..|.+.||+|+||+||+|++.      +++.||||++.....    ....++|.+|+.+|++++|||||+++|
T Consensus        21 ~ei~~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~----~~~~~~f~~E~~il~~l~HpNIV~l~g   96 (308)
T 4gt4_A           21 KEISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAE----GPLREEFRHEAMLRARLQHPNVVCLLG   96 (308)
T ss_dssp             CBCCGGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CC----C-CHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             ccCCHHHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccC----hHHHHHHHHHHHHHHhCCCCCCCCcce
Confidence            3444445567789999999999999973      467899999864432    234578999999999999999999999


Q ss_pred             EEecCCCceeEEEEEecCCCChhhhhcccC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcC
Q 006019          439 FCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLN  504 (664)
Q Consensus       439 ~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk  504 (664)
                      +|.+.+  ..+||||||++|+|.++|+...              ...++|..+++|+.|||+||+|||+.+  |||||||
T Consensus        97 ~~~~~~--~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~--iiHRDLK  172 (308)
T 4gt4_A           97 VVTKDQ--PLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH--VVHKDLA  172 (308)
T ss_dssp             EECSSS--SCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCS
T ss_pred             EEEECC--EEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCC--CCCCCcc
Confidence            999877  5699999999999999996432              246999999999999999999999998  9999999


Q ss_pred             CCCeEecCCCceEecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCC
Q 006019          505 SSAVHLTEDYAAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDN  572 (664)
Q Consensus       505 ~~NILld~~~~~kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~  572 (664)
                      |+|||||+++.+||+|||+++.....           +..+.+||......++.|+|||||||++|||+| |+.||.  +
T Consensus       173 ~~NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~--~  250 (308)
T 4gt4_A          173 TRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYC--G  250 (308)
T ss_dssp             GGGEEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTT--T
T ss_pred             ccceEECCCCCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCC--C
Confidence            99999999999999999999876322           234678888888889999999999999999999 899994  3


Q ss_pred             CChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          573 GSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       573 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      ....+....+..+.          ....+++++.++.+++.+||+.||++||||.||++.|+.+.+
T Consensus       251 ~~~~~~~~~i~~~~----------~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~n  306 (308)
T 4gt4_A          251 YSNQDVVEMIRNRQ----------VLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAWGN  306 (308)
T ss_dssp             CCHHHHHHHHHTTC----------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCC
T ss_pred             CCHHHHHHHHHcCC----------CCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhccC
Confidence            33444444433321          112344556779999999999999999999999999998654

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=2.9e-52  Score=429.06  Aligned_cols=248  Identities=21%  Similarity=0.363  Sum_probs=205.5

Q ss_pred             hhcccccCCCeEEEEEEEC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCce
Q 006019          374 FSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  447 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  447 (664)
                      +.+.||+|+||.||+|++.      ++..||||+++..     .....++|.+|+++|++++|||||+++|+|.+.+  .
T Consensus        17 l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~-----~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~--~   89 (299)
T 4asz_A           17 LKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA-----SDNARKDFHREAELLTNLQHEHIVKFYGVCVEGD--P   89 (299)
T ss_dssp             EEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSC-----CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS--S
T ss_pred             EeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCC-----ChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCC--E
Confidence            5588999999999999974      4788999998632     2345678999999999999999999999999877  6


Q ss_pred             eEEEEEecCCCChhhhhccc-----------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCce
Q 006019          448 RMMVFEYAPNGTLFEHIHIK-----------ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAA  516 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~-----------~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~  516 (664)
                      .+||||||++|+|.++|+..           ....++|.++++|+.|||.||+|||+++  ||||||||+|||||+++.+
T Consensus        90 ~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~--iiHRDlKp~NILl~~~~~~  167 (299)
T 4asz_A           90 LIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH--FVHRDLATRNCLVGENLLV  167 (299)
T ss_dssp             EEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEECGGGCE
T ss_pred             EEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCccCHhhEEECCCCcE
Confidence            79999999999999999642           2457999999999999999999999988  9999999999999999999


Q ss_pred             EecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhc
Q 006019          517 KLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLS  584 (664)
Q Consensus       517 kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~  584 (664)
                      ||+|||+++.....           +..+.+||......++.|+|||||||++|||+| |+.||.  +....+.......
T Consensus       168 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~--~~~~~~~~~~i~~  245 (299)
T 4asz_A          168 KIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWY--QLSNNEVIECITQ  245 (299)
T ss_dssp             EECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTT--TSCHHHHHHHHHH
T ss_pred             EECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCC--CCCHHHHHHHHHc
Confidence            99999999876322           234678888888889999999999999999999 999994  3344444444443


Q ss_pred             CCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCCC
Q 006019          585 GVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPD  642 (664)
Q Consensus       585 ~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~~  642 (664)
                      +.          ....+..++.++.+++.+||+.||++||||++|++.|+++.+.+|.
T Consensus       246 ~~----------~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~~p~  293 (299)
T 4asz_A          246 GR----------VLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKASPV  293 (299)
T ss_dssp             TC----------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSCC
T ss_pred             CC----------CCCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhcCCc
Confidence            31          1122344556799999999999999999999999999999876654

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=9.6e-52  Score=431.06  Aligned_cols=247  Identities=21%  Similarity=0.365  Sum_probs=201.2

Q ss_pred             hhcccccCCCeEEEEEEEC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCce
Q 006019          374 FSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  447 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  447 (664)
                      +.++||+|+||.||+|++.      ++..||||+++..     .....++|.+|+++|++++|||||+++|+|.+.+  .
T Consensus        45 l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~-----~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~--~  117 (329)
T 4aoj_A           45 LKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA-----SESARQDFQREAELLTMLQHQHIVRFFGVCTEGR--P  117 (329)
T ss_dssp             EEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCC-----SHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS--S
T ss_pred             EEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcC-----CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC--E
Confidence            4588999999999999975      4788999998632     2345678999999999999999999999999877  6


Q ss_pred             eEEEEEecCCCChhhhhcccC-------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC
Q 006019          448 RMMVFEYAPNGTLFEHIHIKE-------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY  514 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~~-------------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~  514 (664)
                      .+||||||++|+|.++++...             ...++|.++++|+.|||.||+|||+++  ||||||||+|||||+++
T Consensus       118 ~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~--iiHRDLKp~NILl~~~~  195 (329)
T 4aoj_A          118 LLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH--FVHRDLATRNCLVGQGL  195 (329)
T ss_dssp             EEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEETTT
T ss_pred             EEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCC--eecccccHhhEEECCCC
Confidence            799999999999999986432             246999999999999999999999988  99999999999999999


Q ss_pred             ceEecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHH
Q 006019          515 AAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADY  582 (664)
Q Consensus       515 ~~kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~  582 (664)
                      .+||+|||+++.....           +..+.+||......++.++|||||||++|||+| |+.||..  ....+....+
T Consensus       196 ~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~--~~~~~~~~~i  273 (329)
T 4aoj_A          196 VVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQ--LSNTEAIDCI  273 (329)
T ss_dssp             EEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCS--SCHHHHHHHH
T ss_pred             cEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCC--CCHHHHHHHH
Confidence            9999999999865321           235678998888899999999999999999999 9999943  3344444443


Q ss_pred             hcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCC
Q 006019          583 LSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP  641 (664)
Q Consensus       583 ~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~  641 (664)
                      ..+..          ...+..++.++.+|+.+||+.||++||||+||++.|+.+.+..|
T Consensus       274 ~~g~~----------~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~pp  322 (329)
T 4aoj_A          274 TQGRE----------LERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAPP  322 (329)
T ss_dssp             HHTCC----------CCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHSCC
T ss_pred             HcCCC----------CCCcccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhCCc
Confidence            33311          12233455679999999999999999999999999999987644

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=1.3e-51  Score=424.50  Aligned_cols=251  Identities=24%  Similarity=0.424  Sum_probs=200.9

Q ss_pred             hhhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      .+.+.||+|+||+||+|++++  .||||+++....   .....++|.+|+++|++++|||||+++|+|.++   ..+|||
T Consensus        39 ~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~---~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~---~~~iVm  110 (307)
T 3omv_A           39 MLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDP---TPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKD---NLAIVT  110 (307)
T ss_dssp             CEEEECCCCSSSEEEEEESSS--EEEEEECCCSSC---CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS---SCEEEE
T ss_pred             EEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCC---CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEECC---eEEEEE
Confidence            356889999999999999754  589998864332   234567899999999999999999999999754   458999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      |||++|+|.++|+. ....++|.++++|+.|||.||+|||+.+  ||||||||+|||||+++.+||+|||+|+....   
T Consensus       111 Ey~~gGsL~~~l~~-~~~~l~~~~~~~i~~qia~gL~yLH~~~--IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~  187 (307)
T 3omv_A          111 QWCEGSSLYKHLHV-QETKFQMFQLIDIARQTAQGMDYLHAKN--IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSG  187 (307)
T ss_dssp             ECCSSCBHHHHHHT-SCCCCCHHHHHHHHHHHHHHHHHHHHTT--CBCSCCCSSSEEEETTEEEEECCCSSCBC------
T ss_pred             EcCCCCCHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHHHHCC--ccCCccCHHHEEECCCCcEEEeeccCceecccCCc
Confidence            99999999999974 3456999999999999999999999988  99999999999999999999999999986531   


Q ss_pred             --------hhhhcccccccC---CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 006019          530 --------AEMAATSKKLSS---APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       530 --------~~~~~~~pe~~~---~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                              ++..+.+||...   ...++.|+|||||||++|||+||+.||...  ...+.+...+...     ...|.+.
T Consensus       188 ~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~--~~~~~~~~~~~~~-----~~~p~~~  260 (307)
T 3omv_A          188 SQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHI--NNRDQIIFMVGRG-----YASPDLS  260 (307)
T ss_dssp             ------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTC--CCHHHHHHHHHTT-----CCCCCST
T ss_pred             ceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCC--ChHHHHHHHHhcC-----CCCCCcc
Confidence                    134566788763   345899999999999999999999999432  2222222222221     1223333


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCC
Q 006019          599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP  641 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~  641 (664)
                      ..+.+++.++.+++.+||+.||++||||.||++.|+.+....|
T Consensus       261 ~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~lp  303 (307)
T 3omv_A          261 KLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLP  303 (307)
T ss_dssp             TSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTCC
T ss_pred             cccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhccCC
Confidence            4445566789999999999999999999999999999876544

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=1.8e-49  Score=417.21  Aligned_cols=258  Identities=18%  Similarity=0.284  Sum_probs=204.0

Q ss_pred             HHHHHHhhhhcccccCCCeEEEEEEECC------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCC-CcccceEE
Q 006019          366 ELEAACEDFSNVIGSSPIGTVYKGTLSN------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH-KNFVNLIG  438 (664)
Q Consensus       366 el~~~~~~~~~~iG~G~~G~Vy~g~~~~------~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H-~niv~l~g  438 (664)
                      |+.+....+.+.||+|+||.||+|++..      ++.||||++....    .....++|.+|+++|++++| ||||+++|
T Consensus        60 Ei~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~----~~~~~~~~~~E~~il~~l~hhpnIV~l~g  135 (353)
T 4ase_A           60 EFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA----THSEHRALMSELKILIHIGHHLNVVNLLG  135 (353)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             EecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEcccc----ChHHHHHHHHHHHHHHHcCCCCcEEEEEE
Confidence            3444344456899999999999998643      3579999886432    23345789999999999965 89999999


Q ss_pred             EEecCCCceeEEEEEecCCCChhhhhcccC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcC
Q 006019          439 FCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLN  504 (664)
Q Consensus       439 ~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk  504 (664)
                      +|.+.+. ..+||||||++|+|.++|+...              ...++|..++.|+.|||+||+|||+++  |||||||
T Consensus       136 ~~~~~~~-~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~--iiHRDLK  212 (353)
T 4ase_A          136 ACTKPGG-PLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK--CIHRDLA  212 (353)
T ss_dssp             EECCTTS-CCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCS
T ss_pred             EEEecCC-EEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCC--eecCccC
Confidence            9976532 4689999999999999997431              345899999999999999999999998  9999999


Q ss_pred             CCCeEecCCCceEecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCC
Q 006019          505 SSAVHLTEDYAAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDN  572 (664)
Q Consensus       505 ~~NILld~~~~~kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~  572 (664)
                      |+|||+++++.+||+|||+|+.....           +..+.+||......++.|+|||||||++|||+| |+.||....
T Consensus       213 ~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~  292 (353)
T 4ase_A          213 ARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK  292 (353)
T ss_dssp             GGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred             ccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCC
Confidence            99999999999999999999865321           235678888888889999999999999999999 999995322


Q ss_pred             CChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCC
Q 006019          573 GSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP  641 (664)
Q Consensus       573 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~  641 (664)
                      .  .+.+...+.....         ...++.++.++.+++.+||+.||++||||.||++.|+++++...
T Consensus       293 ~--~~~~~~~i~~g~~---------~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~~  350 (353)
T 4ase_A          293 I--DEEFCRRLKEGTR---------MRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQANA  350 (353)
T ss_dssp             C--SHHHHHHHHHTCC---------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTC
T ss_pred             H--HHHHHHHHHcCCC---------CCCCccCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHHHhh
Confidence            2  2222222222111         12233345679999999999999999999999999999986543

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=2.2e-48  Score=402.48  Aligned_cols=250  Identities=19%  Similarity=0.284  Sum_probs=192.5

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC--ceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP--FTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~--~~~~lV  451 (664)
                      +.+.||+|+||.||+|++ +|+.||||++....      .....+..|+..+.+++|||||+++|+|.+.+.  ...+||
T Consensus         7 L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~------~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV   79 (303)
T 3hmm_A            7 LQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE------ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLV   79 (303)
T ss_dssp             EEEEEEECSSSEEEEEEE-TTEEEEEEEECGGG------HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred             EEEEEeeCCCeEEEEEEE-CCEEEEEEEECccc------hhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEE
Confidence            457899999999999998 58999999985322      112234456666788999999999999986542  246899


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcC------CCCeEEeCcCCCCeEecCCCceEecccCchh
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL------NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN  525 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~------~~~ivHrDLk~~NILld~~~~~kl~DfGla~  525 (664)
                      ||||++|+|.++++.   ..++|..+.+|+.|+|+||+|||+.      .++||||||||+|||||+++++||+|||+++
T Consensus        80 ~Ey~~~gsL~~~l~~---~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~  156 (303)
T 3hmm_A           80 SDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV  156 (303)
T ss_dssp             EECCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             ecCCCCCcHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCc
Confidence            999999999999974   3599999999999999999999975      3469999999999999999999999999987


Q ss_pred             hhhh-------------hhhhcccccccCCC------CCCcCCcchhhHHHHHHHHhCCCCccCCC-------------C
Q 006019          526 EIAM-------------AEMAATSKKLSSAP------SASLESNVYNFGVLLFEMVTGRLPYLVDN-------------G  573 (664)
Q Consensus       526 ~~~~-------------~~~~~~~pe~~~~~------~~s~ksDVySfGvvl~El~tG~~P~~~~~-------------~  573 (664)
                      ....             .+..+.+||+....      .++.|+|||||||++|||+||+.|+....             .
T Consensus       157 ~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~  236 (303)
T 3hmm_A          157 RHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDP  236 (303)
T ss_dssp             EEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSC
T ss_pred             cccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccc
Confidence            6532             23456678876543      36789999999999999999987763211             1


Q ss_pred             ChHHHHHHHhcCCCCCccccCCCCCC--CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          574 SLEDWAADYLSGVQPLQQFVDPTLSS--FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       574 ~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                      ...++......      ...+|.+..  ...+++..+.+++.+||+.||++||||.||++.|+++.+.
T Consensus       237 ~~~~~~~~~~~------~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~  298 (303)
T 3hmm_A          237 SVEEMRKVVCE------QKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             CHHHHHHHHTT------SCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHhc------ccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHH
Confidence            11222222111      112233322  1235677899999999999999999999999999998753

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=1.1e-47  Score=400.83  Aligned_cols=239  Identities=19%  Similarity=0.338  Sum_probs=195.6

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. +|+.||||++......   ....+.|.+|+++|++++|||||++++++.+.+  ..||||
T Consensus        28 ~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~---~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~--~~yiVm  102 (350)
T 4b9d_A           28 RLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMS---SKEREESRREVAVLANMKHPNIVQYRESFEENG--SLYIVM  102 (350)
T ss_dssp             EEEEC------CEEEEEETTTCCEEEEEEEECTTSC---HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             EeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCC---HHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECC--EEEEEE
Confidence            4478999999999999964 6899999999765432   344578999999999999999999999999877  789999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      |||++|+|.++++......+++.....|+.||+.||+|||+++  ||||||||+||||++++.+||+|||+|+....   
T Consensus       103 Ey~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~--IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~  180 (350)
T 4b9d_A          103 DYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRK--ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVE  180 (350)
T ss_dssp             ECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT--CEETTCCGGGEEECTTCCEEECSTTEESCCCHHHH
T ss_pred             eCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeeccCCHHHEEECCCCCEEEcccccceeecCCcc
Confidence            9999999999997666667899999999999999999999999  99999999999999999999999999986532   


Q ss_pred             ------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          530 ------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       530 ------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                            ++..+.+||...+..++.++|||||||++|||+||+.||.  ..+..+....+..+...          ..+..
T Consensus       181 ~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~--~~~~~~~~~~i~~~~~~----------~~~~~  248 (350)
T 4b9d_A          181 LARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFE--AGSMKNLVLKIISGSFP----------PVSLH  248 (350)
T ss_dssp             HHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCC--CSSHHHHHHHHHHTCCC----------CCCTT
T ss_pred             cccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCC--CcCHHHHHHHHHcCCCC----------CCCcc
Confidence                  2345678998888889999999999999999999999994  34555555555543211          11223


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .+.++.+|+.+||+.||++|||+.|+++
T Consensus       249 ~s~~~~~li~~~L~~dP~~R~s~~e~l~  276 (350)
T 4b9d_A          249 YSYDLRSLVSQLFKRNPRDRPSVNSILE  276 (350)
T ss_dssp             SCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             CCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            3456899999999999999999999975

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=3.2e-47  Score=388.85  Aligned_cols=242  Identities=22%  Similarity=0.333  Sum_probs=193.1

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecC--CCceeEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEE--EPFTRMM  450 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~~~l  450 (664)
                      |.+.||+|+||.||+|+.. ++..||+|++......   ....+.|.+|+++|++++|||||++++++...  +....+|
T Consensus        30 ~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~---~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~l  106 (290)
T 3fpq_A           30 FDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLT---KSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL  106 (290)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC---HHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEE
T ss_pred             eeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCC---HHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEE
Confidence            4567999999999999975 5889999998754332   34457899999999999999999999998642  2225799


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecC-CCceEecccCchhhhhh
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE-DYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~-~~~~kl~DfGla~~~~~  529 (664)
                      |||||++|+|.++++.  ...+++.....|+.||+.||+|||+++++||||||||+||||+. ++.+||+|||+|+....
T Consensus       107 vmEy~~gg~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~  184 (290)
T 3fpq_A          107 VTELMTSGTLKTYLKR--FKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA  184 (290)
T ss_dssp             EEECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCT
T ss_pred             EEeCCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEecccChhheeEECCCCCEEEEeCcCCEeCCC
Confidence            9999999999999963  35699999999999999999999999888999999999999984 79999999999986532


Q ss_pred             -------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          530 -------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       530 -------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                             ++..+.+||.... .++.++|||||||++|||+||+.||.. .............+...  ...       +.
T Consensus       185 ~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~-~~~~~~~~~~i~~~~~~--~~~-------~~  253 (290)
T 3fpq_A          185 SFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSE-CQNAAQIYRRVTSGVKP--ASF-------DK  253 (290)
T ss_dssp             TSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTT-CSSHHHHHHHHTTTCCC--GGG-------GG
T ss_pred             CccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCC-CCcHHHHHHHHHcCCCC--CCC-------Cc
Confidence                   2345678897764 589999999999999999999999943 22333333333322111  111       11


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          603 EQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ..+.++.+++.+||+.||++|||+.|+++
T Consensus       254 ~~~~~~~~li~~~L~~dP~~R~s~~e~l~  282 (290)
T 3fpq_A          254 VAIPEVKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             CCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             cCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            22346889999999999999999999875

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=3.4e-47  Score=395.27  Aligned_cols=239  Identities=15%  Similarity=0.153  Sum_probs=196.0

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .++||+|+||.||+|+.. +|+.||||++.....          +.+|+++|++++|||||++++++.+.+  ..+||||
T Consensus        63 ~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~----------~~~E~~il~~l~HpnIV~l~~~~~~~~--~~~ivmE  130 (336)
T 4g3f_A           63 QPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF----------RVEELVACAGLSSPRIVPLYGAVREGP--WVNIFME  130 (336)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC----------CTHHHHTTTTCCCTTBCCEEEEEEETT--EEEEEEC
T ss_pred             CcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh----------HHHHHHHHHhCCCCCCCcEEEEEEECC--EEEEEEe
Confidence            478999999999999975 689999999964321          246999999999999999999998877  7799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC-ceEecccCchhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY-AAKLSDLSFWNEIAM---  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~-~~kl~DfGla~~~~~---  529 (664)
                      ||++|+|.++++.  ...+++.....|+.||+.||+|||+++  ||||||||+||||+.++ .+||+|||+|+....   
T Consensus       131 y~~gg~L~~~l~~--~~~l~e~~~~~~~~qi~~aL~ylH~~~--IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~  206 (336)
T 4g3f_A          131 LLEGGSLGQLIKQ--MGCLPEDRALYYLGQALEGLEYLHTRR--ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGL  206 (336)
T ss_dssp             CCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHTTT--EECSCCCGGGEEECTTSCCEEECCCTTCEEC-----
T ss_pred             ccCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--ceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCc
Confidence            9999999999964  346999999999999999999999999  99999999999999998 699999999986532   


Q ss_pred             -----------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 006019          530 -----------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       530 -----------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                                 ++..+.+||...+..++.++|||||||++|||+||+.||.....  .+....+..+....        .
T Consensus       207 ~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~--~~~~~~i~~~~~~~--------~  276 (336)
T 4g3f_A          207 GKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFR--GPLCLKIASEPPPI--------R  276 (336)
T ss_dssp             -------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCC--SCCHHHHHHSCCGG--------G
T ss_pred             ccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCH--HHHHHHHHcCCCCc--------h
Confidence                       23456789988888899999999999999999999999954322  11222222221111        1


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                      ..++.++..+.+++.+||+.||++|||+.|+++.|...+..
T Consensus       277 ~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~  317 (336)
T 4g3f_A          277 EIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQE  317 (336)
T ss_dssp             GSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             hcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhh
Confidence            12334446789999999999999999999999999887643

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=2e-46  Score=390.70  Aligned_cols=236  Identities=19%  Similarity=0.272  Sum_probs=195.3

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. +|+.||||++.......     .+.+.+|+++|++++|||||++++++.+.+  ..||||
T Consensus        78 ~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~-----~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~--~~~ivm  150 (346)
T 4fih_A           78 NFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQR-----RELLFNEVVIMRDYQHENVVEMYNSYLVGD--ELWVVM  150 (346)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSS-----GGGGHHHHHHHHHCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             EeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhH-----HHHHHHHHHHHHhCCCCCCCcEEEEEEECC--EEEEEE
Confidence            3478999999999999975 68999999997654332     345889999999999999999999999887  789999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      |||++|+|.+++..   ..+++.....|+.||+.||+|||+++  ||||||||+||||+.++.+||+|||+++....   
T Consensus       151 Ey~~gg~L~~~l~~---~~l~e~~~~~~~~qi~~aL~ylH~~~--IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~  225 (346)
T 4fih_A          151 EFLEGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLHAQG--VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP  225 (346)
T ss_dssp             CCCTTEEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC
T ss_pred             eCCCCCcHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCC--cccccCCHHHEEECCCCCEEEecCcCceecCCCCC
Confidence            99999999999863   35999999999999999999999999  99999999999999999999999999986532   


Q ss_pred             ------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          530 ------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       530 ------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                            ++..+.+||......++.++|||||||++|||+||+.||..  .+..+....+.....       +.+ .....
T Consensus       226 ~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~--~~~~~~~~~i~~~~~-------~~~-~~~~~  295 (346)
T 4fih_A          226 RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFN--EPPLKAMKMIRDNLP-------PRL-KNLHK  295 (346)
T ss_dssp             CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTT--SCHHHHHHHHHHSSC-------CCC-SCGGG
T ss_pred             cccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCC--cCHHHHHHHHHcCCC-------CCC-Ccccc
Confidence                  23466789988888899999999999999999999999943  333333333332211       111 11223


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .+.++.+|+.+||+.||++|||+.|+++
T Consensus       296 ~s~~~~dli~~~L~~dP~~R~ta~e~l~  323 (346)
T 4fih_A          296 VSPSLKGFLDRLLVRDPAQRATAAELLK  323 (346)
T ss_dssp             SCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             CCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            3467899999999999999999998876

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=2e-45  Score=372.27  Aligned_cols=237  Identities=20%  Similarity=0.313  Sum_probs=186.7

Q ss_pred             hhhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          373 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      .+.+.||+|+||+||+|+. .+|+.||||++.......  ....+.|.+|+++|++++|||||++++++.+.+  ..++|
T Consensus        16 ~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~--~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~--~~~iv   91 (275)
T 3hyh_A           16 QIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAK--SDMQGRIEREISYLRLLRHPHIIKLYDVIKSKD--EIIMV   91 (275)
T ss_dssp             EEEEEEEC---CCEEEEECTTTCCEEEEEEEECC--------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EEEEE
T ss_pred             EEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCC--HHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECC--EEEEE
Confidence            3458899999999999996 468999999997544322  233567999999999999999999999998877  78999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh--
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM--  529 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~--  529 (664)
                      |||+ +|+|.+++..  ...+++.....++.|++.||+|||+++  |+||||||+|||+++++.+||+|||+|+....  
T Consensus        92 mEy~-~g~L~~~l~~--~~~l~e~~~~~~~~qi~~al~ylH~~~--IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~  166 (275)
T 3hyh_A           92 IEYA-GNELFDYIVQ--RDKMSEQEARRFFQQIISAVEYCHRHK--IVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGN  166 (275)
T ss_dssp             EECC-CEEHHHHHHH--SCSCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCTTTEEECTTCCEEECCSSCC-------
T ss_pred             EeCC-CCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--cccccCChHHeEECCCCCEEEeecCCCeecCCCC
Confidence            9999 6899999864  356999999999999999999999999  99999999999999999999999999986532  


Q ss_pred             ------hhhhcccccccCCCCC-CcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          530 ------AEMAATSKKLSSAPSA-SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       530 ------~~~~~~~pe~~~~~~~-s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                            ++..+.+||...+..+ +.++||||+||++|||+||+.||.  +.+..+.......+...+           +.
T Consensus       167 ~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~--~~~~~~~~~~i~~~~~~~-----------p~  233 (275)
T 3hyh_A          167 FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFD--DESIPVLFKNISNGVYTL-----------PK  233 (275)
T ss_dssp             --------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSC--CSSHHHHHHHHHHTCCCC-----------CT
T ss_pred             ccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCC--CCCHHHHHHHHHcCCCCC-----------CC
Confidence                  2345668888776554 689999999999999999999994  334455554444332111           22


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          603 EQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ..+.++.+++.+||+.||++|||++|+++
T Consensus       234 ~~s~~~~~li~~~L~~dP~~R~s~~eil~  262 (275)
T 3hyh_A          234 FLSPGAAGLIKRMLIVNPLNRISIHEIMQ  262 (275)
T ss_dssp             TSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             CCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence            23356889999999999999999999876

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=4.3e-45  Score=389.85  Aligned_cols=236  Identities=19%  Similarity=0.272  Sum_probs=194.6

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. +|+.||||++.......     .+.+.+|+++|++++|||||++++++.+.+  ..||||
T Consensus       155 ~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~-----~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~--~~~iVm  227 (423)
T 4fie_A          155 NFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQR-----RELLFNEVVIMRDYQHENVVEMYNSYLVGD--ELWVVM  227 (423)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSS-----GGGHHHHHHHHHHCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             eeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhH-----HHHHHHHHHHHHhCCCCCCCceEEEEEECC--EEEEEE
Confidence            3478999999999999975 68999999997654322     346889999999999999999999999877  789999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      |||++|+|.++++.   ..+++.....|+.||+.||+|||+++  ||||||||+||||+.++.+||+|||+++.+..   
T Consensus       228 Ey~~gG~L~~~i~~---~~l~e~~~~~~~~qil~aL~ylH~~~--IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~  302 (423)
T 4fie_A          228 EFLEGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLHAQG--VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP  302 (423)
T ss_dssp             ECCTTEEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSTTTEEECTTCCEEECCCTTCEECCSSCC
T ss_pred             eCCCCCcHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHHHCC--eecccCCHHHEEEcCCCCEEEecCccceECCCCCc
Confidence            99999999999863   35999999999999999999999999  99999999999999999999999999986532   


Q ss_pred             ------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          530 ------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       530 ------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                            ++..+.+||......++.++|||||||++|||+||+.||..  .+..+....+.....       +.+. ....
T Consensus       303 ~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~--~~~~~~~~~i~~~~~-------~~~~-~~~~  372 (423)
T 4fie_A          303 RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFN--EPPLKAMKMIRDNLP-------PRLK-NLHK  372 (423)
T ss_dssp             CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTT--SCHHHHHHHHHHSCC-------CCCS-CTTS
T ss_pred             cccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCC--cCHHHHHHHHHcCCC-------CCCc-cccc
Confidence                  23466789988888899999999999999999999999943  333333333332211       1111 1122


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ...++.+|+.+||+.||++|||+.|+++
T Consensus       373 ~s~~~~dli~~~L~~dP~~R~ta~ell~  400 (423)
T 4fie_A          373 VSPSLKGFLDRLLVRDPAQRATAAELLK  400 (423)
T ss_dssp             SCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             CCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            3356889999999999999999999876

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=5.7e-46  Score=381.47  Aligned_cols=237  Identities=20%  Similarity=0.279  Sum_probs=196.7

Q ss_pred             hhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      ++.+.||+|+||+||+|+.. +|+.||||++.......  ....+.+.+|+++|++++|||||++++++.+.+  ..|+|
T Consensus        35 ~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~--~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~--~~yiv  110 (311)
T 4aw0_A           35 KFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIK--ENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDE--KLYFG  110 (311)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHH--TTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--EEEEE
T ss_pred             EEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCC--HHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCC--EEEEE
Confidence            34589999999999999964 68999999997543211  123467999999999999999999999998877  78999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh--
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM--  529 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~--  529 (664)
                      ||||++|+|.+++..  ...+++.....++.||+.||+|||+++  |+||||||+|||+++++.+||+|||+|+.+..  
T Consensus       111 mEy~~gG~L~~~i~~--~~~l~e~~~~~~~~qi~~al~ylH~~~--IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~  186 (311)
T 4aw0_A          111 LSYAKNGELLKYIRK--IGSFDETCTRFYTAEIVSALEYLHGKG--IIHRDLKPENILLNEDMHIQITDFGTAKVLSPES  186 (311)
T ss_dssp             ECCCTTEEHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECTTSCEEECCCTTCEECCTTT
T ss_pred             EecCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--CccCCCCHHHeEEcCCCCEEEEEcCCceecCCCC
Confidence            999999999999963  356999999999999999999999999  99999999999999999999999999986531  


Q ss_pred             ---------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 006019          530 ---------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  600 (664)
Q Consensus       530 ---------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  600 (664)
                               ++..+.+||......++.++||||+||++|||+||+.||.  ..+..+....+....-.           +
T Consensus       187 ~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~--~~~~~~~~~~i~~~~~~-----------~  253 (311)
T 4aw0_A          187 KQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFR--AGNEGLIFAKIIKLEYD-----------F  253 (311)
T ss_dssp             TCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSC--CSSHHHHHHHHHHTCCC-----------C
T ss_pred             CcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCC--CCCHHHHHHHHHcCCCC-----------C
Confidence                     2345678888877788999999999999999999999994  33445555555443211           1


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCCHHHHH
Q 006019          601 DEEQLETLGELIKSCVRADPEKRPTMRDIA  630 (664)
Q Consensus       601 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~  630 (664)
                      ++....++.+|+.+|++.||++|||++|+.
T Consensus       254 p~~~s~~~~dli~~lL~~dp~~R~t~~e~~  283 (311)
T 4aw0_A          254 PEKFFPKARDLVEKLLVLDATKRLGCEEME  283 (311)
T ss_dssp             CTTCCHHHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred             CcccCHHHHHHHHHHccCCHhHCcChHHHc
Confidence            222335688999999999999999999864

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=1.6e-45  Score=378.09  Aligned_cols=232  Identities=20%  Similarity=0.271  Sum_probs=185.1

Q ss_pred             hhhcccccCCCeEEEEEEEC----CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          373 DFSNVIGSSPIGTVYKGTLS----NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~----~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      ++.+.||+|+||+||+|+..    .++.||||++.......   .....+.+|+++|++++|||||++++++.+.+  ..
T Consensus        27 ~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~---~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~--~~  101 (304)
T 3ubd_A           27 ELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKV---RDRVRTKMERDILVEVNHPFIVKLHYAFQTEG--KL  101 (304)
T ss_dssp             EEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEE---EECC------CCCCCCCCTTEECEEEEEEETT--EE
T ss_pred             EEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcCh---HHHHHHHHHHHHHHHCCCCCCCeEEEEEEECC--EE
Confidence            45589999999999999852    46789999987543221   11236889999999999999999999999877  78


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++|||||++|+|.+++..  ...+++.....++.|++.||+|||+++  |+||||||+|||+++++.+||+|||+|+...
T Consensus       102 ~ivmEy~~gg~L~~~l~~--~~~l~e~~~~~~~~qi~~aL~ylH~~~--IiHRDlKp~NILl~~~g~vKl~DFGla~~~~  177 (304)
T 3ubd_A          102 YLILDFLRGGDLFTRLSK--EVMFTEEDVKFYLAELALALDHLHSLG--IIYRDLKPENILLDEEGHIKLTDFGLSKESI  177 (304)
T ss_dssp             EEEECCCTTCEEHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSSCCGGGEEECTTSCEEEESSEEEEC--
T ss_pred             EEEEEcCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--CcCCCCCHHHeEEcCCCCEEecccccceecc
Confidence            999999999999999964  346999999999999999999999999  9999999999999999999999999998652


Q ss_pred             h---------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 006019          529 M---------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  599 (664)
Q Consensus       529 ~---------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  599 (664)
                      .         ++..+.+||......++.++||||+||++|||+||+.||.  +.+..+....+......           
T Consensus       178 ~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~--~~~~~~~~~~i~~~~~~-----------  244 (304)
T 3ubd_A          178 DHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQ--GKDRKETMTMILKAKLG-----------  244 (304)
T ss_dssp             ---CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSC--CSSHHHHHHHHHHCCCC-----------
T ss_pred             CCCccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCC--CcCHHHHHHHHHcCCCC-----------
Confidence            1         2356678898888889999999999999999999999994  34445555554443211           


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCCCH
Q 006019          600 FDEEQLETLGELIKSCVRADPEKRPTM  626 (664)
Q Consensus       600 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~  626 (664)
                      ++...+.++.+++.+||+.||++|||+
T Consensus       245 ~p~~~s~~~~~li~~~L~~dP~~R~ta  271 (304)
T 3ubd_A          245 MPQFLSPEAQSLLRMLFKRNPANRLGA  271 (304)
T ss_dssp             CCTTSCHHHHHHHHHHTCSSGGGSTTC
T ss_pred             CCCcCCHHHHHHHHHHcccCHHHCCCC
Confidence            122234568899999999999999985

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=3.4e-44  Score=369.50  Aligned_cols=238  Identities=15%  Similarity=0.252  Sum_probs=181.2

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC-------
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP-------  445 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~-------  445 (664)
                      +.+.||+|+||+||+|+.. +|+.||||++.....    ....+.|.+|+++|++++|||||++++++.+.+.       
T Consensus         9 ~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~----~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~   84 (299)
T 4g31_A            9 PIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNR----ELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS   84 (299)
T ss_dssp             EEEEEEECC--EEEEEEETTTCCEEEEEEEEECSS----HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred             EeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCC----HHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence            3488999999999999964 689999999875432    3345679999999999999999999999875432       


Q ss_pred             ---ceeEEEEEecCCCChhhhhcccC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEeccc
Q 006019          446 ---FTRMMVFEYAPNGTLFEHIHIKE-SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDL  521 (664)
Q Consensus       446 ---~~~~lV~Ey~~~GsL~~~l~~~~-~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~Df  521 (664)
                         ...++|||||++|+|.+++.... ....++.....|+.|++.||+|||+++  |+||||||+|||++.++.+||+||
T Consensus        85 ~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~~--IiHRDlKp~NILl~~~~~vKl~DF  162 (299)
T 4g31_A           85 SPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKG--LMHRDLKPSNIFFTMDDVVKVGDF  162 (299)
T ss_dssp             --CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECTTCCEEECCC
T ss_pred             CCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHCc--CccccCcHHHeEECCCCcEEEccC
Confidence               13689999999999999997542 234677888899999999999999999  999999999999999999999999


Q ss_pred             Cchhhhhh---------------------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHH
Q 006019          522 SFWNEIAM---------------------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAA  580 (664)
Q Consensus       522 Gla~~~~~---------------------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~  580 (664)
                      |+|+....                     ++..+.+||...+..++.++|||||||++|||++   ||.... +......
T Consensus       163 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~-~~~~~~~  238 (299)
T 4g31_A          163 GLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQM-ERVRTLT  238 (299)
T ss_dssp             CCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHH-HHHHHHH
T ss_pred             ccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCcc-HHHHHHH
Confidence            99987632                     2345668888888889999999999999999997   773211 1111111


Q ss_pred             HHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          581 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       581 ~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ....          .............+.+++.+||+.||++|||+.|+++
T Consensus       239 ~~~~----------~~~p~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  279 (299)
T 4g31_A          239 DVRN----------LKFPPLFTQKYPCEYVMVQDMLSPSPMERPEAINIIE  279 (299)
T ss_dssp             HHHT----------TCCCHHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HHhc----------CCCCCCCcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            1111          1111111233345678999999999999999999876

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.2e-41  Score=361.90  Aligned_cols=248  Identities=15%  Similarity=0.171  Sum_probs=188.3

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCC----Ccee
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE----PFTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~----~~~~  448 (664)
                      +.+.||+|+||.||+|+.. +|+.||||++.....   .....+.+.+|+++|++++|||||++++++....    ....
T Consensus        58 ~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~---~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~~  134 (398)
T 4b99_A           58 IIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFD---VVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKSV  134 (398)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTS---SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCCE
T ss_pred             EEEEEecccCeEEEEEEECCCCCEEEEEEECcccc---chHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCEE
Confidence            4588999999999999964 699999999864322   1334567899999999999999999999986432    1257


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      |||||||+ |+|.+++.  ....+++.....|+.||+.||+|||+++  ||||||||+|||++.++.+||+|||+++.+.
T Consensus       135 ~ivmE~~~-g~L~~~i~--~~~~l~~~~~~~~~~qil~al~ylH~~~--iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~  209 (398)
T 4b99_A          135 YVVLDLME-SDLHQIIH--SSQPLTLEHVRYFLYQLLRGLKYMHSAQ--VIHRDLKPSNLLVNENCELKIGDFGMARGLC  209 (398)
T ss_dssp             EEEEECCS-EEHHHHHT--SSSCCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCCGGGEEECTTCCEEECCCTTCBCC-
T ss_pred             EEEEeCCC-CCHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHCc--CcCCCcCccccccCCCCCEEEeecceeeecc
Confidence            99999996 78999986  3467999999999999999999999999  9999999999999999999999999998653


Q ss_pred             h-------------hhhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCc-ccc
Q 006019          529 M-------------AEMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQ-QFV  593 (664)
Q Consensus       529 ~-------------~~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~-~~~  593 (664)
                      .             ++..+.+||...+ ..++.++||||+||++|||+||+.||...  +..+....+........ ...
T Consensus       210 ~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~--~~~~~l~~I~~~~g~p~~~~~  287 (398)
T 4b99_A          210 TSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGK--NYVHQLQLIMMVLGTPSPAVI  287 (398)
T ss_dssp             ------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCS--SHHHHHHHHHHHHCCCCGGGT
T ss_pred             cCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCC--CHHHHHHHHHHhcCCCChHHh
Confidence            2             2334567887554 45789999999999999999999999532  22333222221111000 000


Q ss_pred             C--------------CCCCCCC-----HHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          594 D--------------PTLSSFD-----EEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       594 d--------------~~~~~~~-----~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .              +.....+     +....++.+|+.+||+.||++|||+.|+++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~  344 (398)
T 4b99_A          288 QAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALR  344 (398)
T ss_dssp             C-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             hhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence            0              0000001     112356889999999999999999999876

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=3.1e-41  Score=352.86  Aligned_cols=256  Identities=29%  Similarity=0.510  Sum_probs=211.5

Q ss_pred             hcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          375 SNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      .+.||+|+||.||+|++.++..||||++....     ....+.|.+|++++++++||||+++++++.+.+  ..++||||
T Consensus        44 ~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~e~  116 (321)
T 2qkw_B           44 KFLIGHGVFGKVYKGVLRDGAKVALKRRTPES-----SQGIEEFETEIETLSFCRHPHLVSLIGFCDERN--EMILIYKY  116 (321)
T ss_dssp             CCCSCBCSSSEEEEEECTTCCEEEEEECCSCC-----SSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTT--CCEEEEEC
T ss_pred             cceeecCCCeeEEEEEECCCCEEEEEEecccC-----hHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCC--eEEEEEEc
Confidence            37899999999999998889999999876432     224567999999999999999999999998776  66999999


Q ss_pred             cCCCChhhhhcccC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          455 APNGTLFEHIHIKE--SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       455 ~~~GsL~~~l~~~~--~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      +++|+|.+++....  ...++|..+.+++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||+++....   
T Consensus       117 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~--ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  194 (321)
T 2qkw_B          117 MENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRA--IIHRDVKSINILLDENFVPKITDFGISKKGTELDQ  194 (321)
T ss_dssp             CTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCSTTEEECTTCCEEECCCTTCEECSSSSC
T ss_pred             CCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCC--eecCCCCHHHEEECCCCCEEEeecccccccccccc
Confidence            99999999986443  245999999999999999999999998  99999999999999999999999999875421   


Q ss_pred             --------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCC----CCChHHHHHHHhcCCCCCccccCCCC
Q 006019          530 --------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVD----NGSLEDWAADYLSGVQPLQQFVDPTL  597 (664)
Q Consensus       530 --------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~----~~~~~~~~~~~~~~~~~~~~~~d~~~  597 (664)
                              ....+.+||......++.++||||||+++|||+||+.||...    .....+|....... ..+...+++..
T Consensus       195 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  273 (321)
T 2qkw_B          195 THLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNN-GQLEQIVDPNL  273 (321)
T ss_dssp             CCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTT-TCCCSSSSSSC
T ss_pred             cccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhcccc-ccHHHhcChhh
Confidence                    133456777766667899999999999999999999999532    22344554433322 34455556554


Q ss_pred             C-CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCC
Q 006019          598 S-SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  640 (664)
Q Consensus       598 ~-~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~  640 (664)
                      . ..+.+.+..+.+++.+||+.||++||++.|+++.|+.++...
T Consensus       274 ~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~~  317 (321)
T 2qkw_B          274 ADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRLQ  317 (321)
T ss_dssp             TTCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSS
T ss_pred             ccccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhcc
Confidence            3 456788899999999999999999999999999999997653

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=4.8e-40  Score=341.37  Aligned_cols=273  Identities=25%  Similarity=0.485  Sum_probs=222.6

Q ss_pred             CCCCCHHHHHHHHhhhh--------cccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCC
Q 006019          359 VPKLKRSELEAACEDFS--------NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH  430 (664)
Q Consensus       359 ~~~~~~~el~~~~~~~~--------~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H  430 (664)
                      ...+++.++..++.+|.        +.||+|+||.||+|.. ++..||||++....... .....+.|.+|++++++++|
T Consensus        12 ~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~-~~~~~~~~~~E~~~l~~l~h   89 (307)
T 2nru_A           12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDIT-TEELKQQFDQEIKVMAKCQH   89 (307)
T ss_dssp             CEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSC-TTTHHHHHHHHHHHHHHCCC
T ss_pred             CCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcc-hHHHHHHHHHHHHHHHhcCC
Confidence            45688999999999886        4699999999999987 67899999986543221 23456789999999999999


Q ss_pred             CcccceEEEEecCCCceeEEEEEecCCCChhhhhccc-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeE
Q 006019          431 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIK-ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH  509 (664)
Q Consensus       431 ~niv~l~g~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~-~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NIL  509 (664)
                      |||+++++++.+.+  ..++||||+++|+|.+++... ....++|..+..|+.+++.||+|||+.+  ++||||||+||+
T Consensus        90 ~~i~~~~~~~~~~~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~--i~H~dlkp~Nil  165 (307)
T 2nru_A           90 ENLVELLGFSSDGD--DLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENH--HIHRDIKSANIL  165 (307)
T ss_dssp             TTBCCEEEEECSSS--SCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEE
T ss_pred             CCeEEEEEEEecCC--ceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcCC--eecCCCCHHHEE
Confidence            99999999998776  569999999999999998643 3456999999999999999999999998  999999999999


Q ss_pred             ecCCCceEecccCchhhhhh-----------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCC--CChH
Q 006019          510 LTEDYAAKLSDLSFWNEIAM-----------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDN--GSLE  576 (664)
Q Consensus       510 ld~~~~~kl~DfGla~~~~~-----------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~--~~~~  576 (664)
                      +++++.+||+|||+++....           ....+.+||.... .++.++||||||+++|||+||+.||....  ....
T Consensus       166 i~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~  244 (307)
T 2nru_A          166 LDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLL  244 (307)
T ss_dssp             ECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTT
T ss_pred             EcCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcchHHHH
Confidence            99999999999999875432           1234556775543 47889999999999999999999995322  2233


Q ss_pred             HHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          577 DWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       577 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      .+..........+...+++.+...+......+.+++.+||+.||++||++.+|++.|+++..
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~  306 (307)
T 2nru_A          245 DIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA  306 (307)
T ss_dssp             HHHHHHHTTSCCHHHHSCSSCSCCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred             HHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence            44444333334455566666667778888999999999999999999999999999998854

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=5.2e-41  Score=351.80  Aligned_cols=271  Identities=28%  Similarity=0.558  Sum_probs=219.2

Q ss_pred             CCCCCHHHHHHHHhhhh--cccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccce
Q 006019          359 VPKLKRSELEAACEDFS--NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNL  436 (664)
Q Consensus       359 ~~~~~~~el~~~~~~~~--~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l  436 (664)
                      ...++..++....++|.  +.||+|+||.||+|+..++..||||++.......    ....|.+|++++++++||||+++
T Consensus        17 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~----~~~~~~~e~~~l~~l~h~~iv~~   92 (326)
T 3uim_A           17 LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQG----GELQFQTEVEMISMAVHRNLLRL   92 (326)
T ss_dssp             CEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC---------CCCHHHHHHHGGGTCCCTTBCCC
T ss_pred             cceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCch----HHHHHHHHHHHHHhccCCCccce
Confidence            45677888888877776  8899999999999998889999999986543222    12368999999999999999999


Q ss_pred             EEEEecCCCceeEEEEEecCCCChhhhhcccC--CCCCCHHHHHHHHHHHHHHHHHhhcC-CCCeEEeCcCCCCeEecCC
Q 006019          437 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--SEHLDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLTED  513 (664)
Q Consensus       437 ~g~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~--~~~l~~~~~~~ia~~ia~gL~yLH~~-~~~ivHrDLk~~NILld~~  513 (664)
                      ++++...+  ..++||||+++|+|.++++...  ...++|..+..|+.+++.||+|||+. .+.|+||||||+|||++.+
T Consensus        93 ~~~~~~~~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~  170 (326)
T 3uim_A           93 RGFCMTPT--ERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEE  170 (326)
T ss_dssp             CEEECCSS--CCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTT
T ss_pred             EEEEecCC--ceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCC
Confidence            99998776  5699999999999999997543  34599999999999999999999987 2229999999999999999


Q ss_pred             CceEecccCchhhhhh----------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCcc------CCCCChHH
Q 006019          514 YAAKLSDLSFWNEIAM----------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYL------VDNGSLED  577 (664)
Q Consensus       514 ~~~kl~DfGla~~~~~----------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~------~~~~~~~~  577 (664)
                      +.+||+|||+++....          ....+.+||......++.++|||||||++|||+||+.||.      .......+
T Consensus       171 ~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~  250 (326)
T 3uim_A          171 FEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLD  250 (326)
T ss_dssp             CCEEECCCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHH
T ss_pred             CCEEeccCccccccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHH
Confidence            9999999999875531          2334567777666678899999999999999999999994      22334555


Q ss_pred             HHHHHhcCCCCCccccCCCCC-CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 006019          578 WAADYLSGVQPLQQFVDPTLS-SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  636 (664)
Q Consensus       578 ~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i  636 (664)
                      |....... .....+.+.... ..+.+....+.+++.+||+.||++|||+.||++.|++.
T Consensus       251 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~  309 (326)
T 3uim_A          251 WVKGLLKE-KKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD  309 (326)
T ss_dssp             HHTTTTSS-CCSTTSSCTTCTTSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTS
T ss_pred             HHHHHhhc-hhhhhhcChhhccccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCc
Confidence            65544433 344455555443 45678888999999999999999999999999999974

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=3.1e-40  Score=343.34  Aligned_cols=251  Identities=23%  Similarity=0.363  Sum_probs=197.3

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.+.||+|+||.||+|+. +|..||||++.....   .....++|.+|++++++++||||+++++++.+.+  ..++|||
T Consensus        41 i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~---~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~lv~e  114 (309)
T 3p86_A           41 IKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDF---HAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPP--NLSIVTE  114 (309)
T ss_dssp             EEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCC---SHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTT--CCEEEEE
T ss_pred             eeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCC---CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECC--ceEEEEe
Confidence            458899999999999987 578899999864432   2344578999999999999999999999998776  5699999


Q ss_pred             ecCCCChhhhhcccC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          454 YAPNGTLFEHIHIKE-SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~-~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      |+++|+|.++++... ...+++..+..++.+++.||+|||+.+++|+||||||+|||++.++.+||+|||+++.....  
T Consensus       115 ~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~~  194 (309)
T 3p86_A          115 YLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFL  194 (309)
T ss_dssp             CCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTSSSCCCCTTCCGGGEEECTTCCEEECCCC----------
T ss_pred             cCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEECCCCChhhEEEeCCCcEEECCCCCCcccccccc
Confidence            999999999997432 12499999999999999999999998888999999999999999999999999998754322  


Q ss_pred             -------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          531 -------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       531 -------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                             ...+.+||......++.++|||||||++|||+||+.||..  ....+...........         ...+..
T Consensus       195 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~--~~~~~~~~~~~~~~~~---------~~~~~~  263 (309)
T 3p86_A          195 SSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGN--LNPAQVVAAVGFKCKR---------LEIPRN  263 (309)
T ss_dssp             -------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTT--SCHHHHHHHHHHSCCC---------CCCCTT
T ss_pred             ccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHHhcCCC---------CCCCcc
Confidence                   2345678888778889999999999999999999999943  2333333222111111         112233


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCC
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP  641 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~  641 (664)
                      ...++.+++.+||+.||++||++.++++.|+.+.+...
T Consensus       264 ~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~~  301 (309)
T 3p86_A          264 LNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSAV  301 (309)
T ss_dssp             SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC---
T ss_pred             CCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhCC
Confidence            34568999999999999999999999999999987543

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=3.4e-40  Score=348.84  Aligned_cols=183  Identities=14%  Similarity=0.292  Sum_probs=155.6

Q ss_pred             hhcccccCCCeEEEEEEEC----CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCcee
Q 006019          374 FSNVIGSSPIGTVYKGTLS----NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~----~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~  448 (664)
                      +.+.||+|+||+||+|+.+    .++.||+|++....       ...++.+|+++|+++ +|||||++++++.+.+  ..
T Consensus        25 i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~-------~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~--~~   95 (361)
T 4f9c_A           25 IEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS-------HPIRIAAELQCLTVAGGQDNVMGVKYCFRKND--HV   95 (361)
T ss_dssp             EEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS-------CHHHHHHHHHHHHHTCSBTTBCCCSEEEEETT--EE
T ss_pred             EEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc-------CHHHHHHHHHHHHHhcCCCCCceEEEEEEECC--EE
Confidence            4488999999999999853    46789999885321       235688999999998 6999999999998877  78


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCC-CceEecccCchhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED-YAAKLSDLSFWNEI  527 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~-~~~kl~DfGla~~~  527 (664)
                      ++|||||++|+|.++++     .+++.....++.|++.||+|||+++  |+||||||+|||++.+ +.+||+|||+|+..
T Consensus        96 ~lvmE~~~g~~L~~~~~-----~l~~~~~~~~~~qll~al~ylH~~g--IiHRDiKPeNiLl~~~~~~~kl~DFGla~~~  168 (361)
T 4f9c_A           96 VIAMPYLEHESFLDILN-----SLSFQEVREYMLNLFKALKRIHQFG--IVHRDVKPSNFLYNRRLKKYALVDFGLAQGT  168 (361)
T ss_dssp             EEEEECCCCCCHHHHHT-----TCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEETTTTEEEECCCTTCEEC
T ss_pred             EEEEeCCCcccHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHHCC--eEeCcCCHHHeEEeCCCCeEEECcCCCCccc
Confidence            99999999999999984     4899999999999999999999999  9999999999999977 79999999999743


Q ss_pred             hh-------------------------------------hhhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCcc
Q 006019          528 AM-------------------------------------AEMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYL  569 (664)
Q Consensus       528 ~~-------------------------------------~~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~  569 (664)
                      ..                                     ++..+.+||...+ +.++.++||||+||++|||+||+.||.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~  248 (361)
T 4f9c_A          169 HDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFY  248 (361)
T ss_dssp             TTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSS
T ss_pred             CCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCC
Confidence            21                                     2345667886654 458999999999999999999999996


Q ss_pred             CCC
Q 006019          570 VDN  572 (664)
Q Consensus       570 ~~~  572 (664)
                      ...
T Consensus       249 ~~~  251 (361)
T 4f9c_A          249 KAS  251 (361)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            443

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=6.6e-40  Score=367.27  Aligned_cols=240  Identities=20%  Similarity=0.300  Sum_probs=196.3

Q ss_pred             hhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      ++.+.||+|+||.||+|+.. +|+.||+|++....     ....+.+.+|+++|++++|||||++++++.+.+  ..+||
T Consensus       160 ~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~-----~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~--~~~iv  232 (573)
T 3uto_A          160 DIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPH-----ESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDN--EMVMI  232 (573)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-----HHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSS--EEEEE
T ss_pred             EEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccc-----hhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECC--EEEEE
Confidence            35588999999999999975 68999999986532     233567899999999999999999999998877  78999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCC--CceEecccCchhhhhh
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED--YAAKLSDLSFWNEIAM  529 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~--~~~kl~DfGla~~~~~  529 (664)
                      ||||++|+|.+++.. ....+++.....++.||+.||+|||+++  |+||||||+|||++.+  +.+||+|||+++.+..
T Consensus       233 ~E~~~gg~L~~~i~~-~~~~l~e~~~~~~~~qi~~al~ylH~~~--iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~  309 (573)
T 3uto_A          233 YEFMSGGELFEKVAD-EHNKMSEDEAVEYMRQVCKGLCHMHENN--YVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDP  309 (573)
T ss_dssp             EECCCCCBHHHHHTC-TTSCEEHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEESSSSCCCEEECCCSSCEECCT
T ss_pred             EeecCCCcHHHHHHH-hCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeeccCChhhccccCCCCCCEEEeeccceeEccC
Confidence            999999999999853 3457999999999999999999999999  9999999999999855  8999999999987642


Q ss_pred             --------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 006019          530 --------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  601 (664)
Q Consensus       530 --------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  601 (664)
                              ++..+.+||...+..++.++||||+||++|||++|+.||.  +.+..+....+...........   .    
T Consensus       310 ~~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~--~~~~~~~~~~i~~~~~~~~~~~---~----  380 (573)
T 3uto_A          310 KQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFG--GENDDETLRNVKSCDWNMDDSA---F----  380 (573)
T ss_dssp             TSEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSC--CSSHHHHHHHHHTTCCCCCSGG---G----
T ss_pred             CCceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCC--CcCHHHHHHHHHhCCCCCCccc---c----
Confidence                    2345678898888889999999999999999999999994  3344444444443322211111   1    


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          602 EEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       602 ~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .....++.+|+.+||+.||++||++.|+++
T Consensus       381 ~~~s~~~~dli~~~L~~dp~~R~t~~e~l~  410 (573)
T 3uto_A          381 SGISEDGKDFIRKLLLADPNTRMTIHQALE  410 (573)
T ss_dssp             TTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             cCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            122356889999999999999999999876

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=2.8e-40  Score=362.32  Aligned_cols=245  Identities=22%  Similarity=0.356  Sum_probs=201.5

Q ss_pred             hhhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      .+.+.||+|+||.||+|.+.++..||||++....      ...++|.+|+++|++++|||||++++++.. +  ..++||
T Consensus       191 ~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~------~~~~~~~~E~~~l~~l~h~~iv~l~~~~~~-~--~~~lv~  261 (454)
T 1qcf_A          191 KLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS------MSVEAFLAEANVMKTLQHDKLVKLHAVVTK-E--PIYIIT  261 (454)
T ss_dssp             EEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS------BCHHHHHHHHHHHTTCCCTTBCCEEEEECS-S--SCEEEE
T ss_pred             EEEEEcccCCceEEEEEEECCccEEEEEEecCCC------ccHHHHHHHHHHHhhCCCCCEeeEEEEEeC-C--ccEEEE
Confidence            3458899999999999999889999999986432      125689999999999999999999999873 3  468999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      |||++|+|.++++......+++..+.+++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....  
T Consensus       262 e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~--ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~  339 (454)
T 1qcf_A          262 EFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRN--YIHRDLRAANILVSASLVCKIADFGLARVIEDNEY  339 (454)
T ss_dssp             CCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHTT--CCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHHH
T ss_pred             eecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCC--ccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCce
Confidence            9999999999997544456899999999999999999999998  999999999999999999999999999875321  


Q ss_pred             --------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 006019          531 --------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  601 (664)
Q Consensus       531 --------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  601 (664)
                              ...+.+||......++.++|||||||++|||+| |+.||..  ....+.......+..          ...+
T Consensus       340 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~--~~~~~~~~~i~~~~~----------~~~~  407 (454)
T 1qcf_A          340 TAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPG--MSNPEVIRALERGYR----------MPRP  407 (454)
T ss_dssp             HTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTT--CCHHHHHHHHHHTCC----------CCCC
T ss_pred             eccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHcCCC----------CCCC
Confidence                    124567887766778999999999999999999 9999943  333343333332211          1112


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCC
Q 006019          602 EEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  640 (664)
Q Consensus       602 ~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~  640 (664)
                      ..++.++.+++.+||+.||++||+|.+|++.|+++....
T Consensus       408 ~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~~  446 (454)
T 1qcf_A          408 ENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTAT  446 (454)
T ss_dssp             TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSSS
T ss_pred             CCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhcc
Confidence            334567999999999999999999999999999997654

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=3.5e-40  Score=351.77  Aligned_cols=247  Identities=21%  Similarity=0.343  Sum_probs=199.6

Q ss_pred             hhcccccCCCeEEEEEEEC--------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCC
Q 006019          374 FSNVIGSSPIGTVYKGTLS--------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEE  444 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~--------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~  444 (664)
                      +.+.||+|+||.||+|+..        ++..||||++....    .....+++.+|+++++++ +||||++++++|.+.+
T Consensus        85 ~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~  160 (370)
T 2psq_A           85 LGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA----TEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG  160 (370)
T ss_dssp             EEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTC----BHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSSS
T ss_pred             eeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCc----CHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccCC
Confidence            4588999999999999862        35679999886432    234457899999999999 8999999999998877


Q ss_pred             CceeEEEEEecCCCChhhhhcccC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEe
Q 006019          445 PFTRMMVFEYAPNGTLFEHIHIKE--------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL  510 (664)
Q Consensus       445 ~~~~~lV~Ey~~~GsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILl  510 (664)
                        ..++||||+++|+|.+++....              ...+++..+..++.+++.||+|||+.+  |+||||||+|||+
T Consensus       161 --~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivHrDlkp~NIll  236 (370)
T 2psq_A          161 --PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK--CIHRDLAARNVLV  236 (370)
T ss_dssp             --SCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEE
T ss_pred             --CEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC--eeccccchhhEEE
Confidence              5699999999999999987432              245899999999999999999999998  9999999999999


Q ss_pred             cCCCceEecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHH
Q 006019          511 TEDYAAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDW  578 (664)
Q Consensus       511 d~~~~~kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~  578 (664)
                      +.++.+||+|||+++.....           ...+.+||......++.++|||||||++|||+| |+.||...  ...+.
T Consensus       237 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~--~~~~~  314 (370)
T 2psq_A          237 TENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI--PVEEL  314 (370)
T ss_dssp             CTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC--CGGGH
T ss_pred             CCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCC--CHHHH
Confidence            99999999999998754321           134677887777789999999999999999999 99999532  22222


Q ss_pred             HHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCC
Q 006019          579 AADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  640 (664)
Q Consensus       579 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~  640 (664)
                      ......+.          ....+..+..++.+++.+||+.||++||++.|+++.|++++...
T Consensus       315 ~~~~~~~~----------~~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il~~~  366 (370)
T 2psq_A          315 FKLLKEGH----------RMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLT  366 (370)
T ss_dssp             HHHHHTTC----------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCC----------CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHh
Confidence            22222211          11122334467899999999999999999999999999987653

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=1.4e-39  Score=340.97  Aligned_cols=248  Identities=20%  Similarity=0.326  Sum_probs=200.3

Q ss_pred             hhhcccccCCCeEEEEEEEC----CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          373 DFSNVIGSSPIGTVYKGTLS----NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~----~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      .+.+.||+|+||.||+|++.    .+..||||++....    .....+.|.+|++++++++||||+++++++.+.+  ..
T Consensus        52 ~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~  125 (325)
T 3kul_A           52 HIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGY----TERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGR--LA  125 (325)
T ss_dssp             EEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTC----CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGG--CC
T ss_pred             EEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCC----CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC--cc
Confidence            34588999999999999974    35569999986332    2345678999999999999999999999998776  56


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++||||+++|+|.++++. ....+++..+..|+.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...
T Consensus       126 ~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~~L~~LH~~~--ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  202 (325)
T 3kul_A          126 MIVTEYMENGSLDTFLRT-HDGQFTIMQLVGMLRGVGAGMRYLSDLG--YVHRDLAARNVLVDSNLVCKVSDFGLSRVLE  202 (325)
T ss_dssp             EEEEECCTTCBHHHHHHT-TTTCSCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECTTCCEEECCCSSCEECC
T ss_pred             EEEeeCCCCCcHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHHCC--eeCCCCCcceEEECCCCCEEECCCCcccccc
Confidence            999999999999999863 3456999999999999999999999998  9999999999999999999999999988653


Q ss_pred             hh------------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCC
Q 006019          529 MA------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  595 (664)
Q Consensus       529 ~~------------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~  595 (664)
                      ..            ...+.+||......++.++|||||||++|||+| |+.||..  ....+..........        
T Consensus       203 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~--~~~~~~~~~~~~~~~--------  272 (325)
T 3kul_A          203 DDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWN--MTNRDVISSVEEGYR--------  272 (325)
T ss_dssp             ----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTT--SCHHHHHHHHHTTCC--------
T ss_pred             cCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCccc--CCHHHHHHHHHcCCC--------
Confidence            21            123567777766678899999999999999999 9999942  233333333322211        


Q ss_pred             CCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCC
Q 006019          596 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP  641 (664)
Q Consensus       596 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~  641 (664)
                        ...+..++..+.+++.+||+.||++||++.+|++.|+.+.....
T Consensus       273 --~~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~~  316 (325)
T 3kul_A          273 --LPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSPE  316 (325)
T ss_dssp             --CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSCC
T ss_pred             --CCCCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCcc
Confidence              11122334678999999999999999999999999999986533

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=3.7e-40  Score=352.61  Aligned_cols=244  Identities=25%  Similarity=0.354  Sum_probs=197.9

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|++. ++..||||.+....    .....++|.+|+++|++++|||||+++|+|...+  ..++||
T Consensus       118 ~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~--~~~lv~  191 (377)
T 3cbl_A          118 LGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETL----PPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQ--PIYIVM  191 (377)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEECCTTS----CHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSS--SCEEEE
T ss_pred             EeeEeccCCCCeEEEEEEecCCeEEEEEEccccC----CHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCC--CcEEEE
Confidence            4588999999999999986 68999999886321    2334567999999999999999999999998776  569999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++|+|.++++. ....+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....  
T Consensus       192 e~~~~g~L~~~l~~-~~~~~~~~~~~~~~~qi~~~l~~LH~~~--ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~  268 (377)
T 3cbl_A          192 ELVQGGDFLTFLRT-EGARLRVKTLLQMVGDAAAGMEYLESKC--CIHRDLAARNCLVTEKNVLKISDFGMSREEADGVY  268 (377)
T ss_dssp             ECCTTCBHHHHHHH-HGGGCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECTTCCEEECCGGGCEECTTSEE
T ss_pred             EcCCCCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHCC--cCCcccCHHHEEEcCCCcEEECcCCCceecCCCce
Confidence            99999999999963 3346899999999999999999999998  999999999999999999999999998754321  


Q ss_pred             ---------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 006019          531 ---------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  600 (664)
Q Consensus       531 ---------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  600 (664)
                               ...+.+||......++.++|||||||++|||+| |+.||..  ....+.......+ ..         ...
T Consensus       269 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~--~~~~~~~~~~~~~-~~---------~~~  336 (377)
T 3cbl_A          269 AASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPN--LSNQQTREFVEKG-GR---------LPC  336 (377)
T ss_dssp             ECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTT--SCHHHHHHHHHTT-CC---------CCC
T ss_pred             eecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHcC-CC---------CCC
Confidence                     223567777666678899999999999999999 9999943  2222222222211 11         112


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          601 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       601 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      +..++..+.+++.+||+.||++||||.++++.|+++.+
T Consensus       337 ~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~  374 (377)
T 3cbl_A          337 PELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRK  374 (377)
T ss_dssp             CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHh
Confidence            23344678999999999999999999999999999864

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=8e-40  Score=358.37  Aligned_cols=247  Identities=23%  Similarity=0.363  Sum_probs=200.5

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.+.||+|+||.||+|.+.++..||||++.....      ..++|.+|+++|++++||||+++++++.+ +  ..++|||
T Consensus       188 ~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~--~~~iv~e  258 (452)
T 1fmk_A          188 LEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM------SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-E--PIYIVTE  258 (452)
T ss_dssp             EEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS------CHHHHHHHHHHHHHCCCTTBCCEEEEECS-S--SCEEEEC
T ss_pred             eeeeecCCCCeEEEEEEECCCceEEEEEeccCCC------CHHHHHHHHHHHHhCCCCCEeeEEEEEcC-C--ceEEEeh
Confidence            4578999999999999998888899999864321      24679999999999999999999999976 3  4589999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      |+++|+|.++++......+++..+..++.+++.||+|||+++  |+||||||+|||+++++.+||+|||+++.....   
T Consensus       259 ~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~--ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~  336 (452)
T 1fmk_A          259 YMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN--YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYT  336 (452)
T ss_dssp             CCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEECGGGCEEECCCCTTC--------
T ss_pred             hhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeCCCCChhhEEECCCCCEEECCCccceecCCCcee
Confidence            999999999997544456999999999999999999999998  999999999999999999999999999865321   


Q ss_pred             -------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          531 -------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       531 -------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                             ...+.+||......++.++|||||||++|||+| |+.||..  ....+.......+..          ...+.
T Consensus       337 ~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~--~~~~~~~~~i~~~~~----------~~~~~  404 (452)
T 1fmk_A          337 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPG--MVNREVLDQVERGYR----------MPCPP  404 (452)
T ss_dssp             ------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTT--CCHHHHHHHHHTTCC----------CCCCT
T ss_pred             cccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHcCCC----------CCCCC
Confidence                   124667887766778999999999999999999 9999942  333333333322211          11233


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCCCC
Q 006019          603 EQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDG  643 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~~~  643 (664)
                      .++..+.+++.+||+.||++||++.++++.|+++.....+.
T Consensus       405 ~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~~~~~  445 (452)
T 1fmk_A          405 ECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQ  445 (452)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSCCC
T ss_pred             CCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhccCCcc
Confidence            44567899999999999999999999999999998765443

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=6.6e-40  Score=358.81  Aligned_cols=243  Identities=24%  Similarity=0.379  Sum_probs=198.8

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.+.||+|+||.||+|.+. +..||||+++...       ..++|.+|+++|++++|||||++++++.+.+. ..++|||
T Consensus       197 ~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~-------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~-~~~iv~e  267 (450)
T 1k9a_A          197 LLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA-------TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKG-GLYIVTE  267 (450)
T ss_dssp             EEEEEEECSSEEEEEEEET-TEEEEEEEESSCT-------TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTS-CEEEEEE
T ss_pred             EEeeecCcCCeeEEEEEec-CCeEEEEEeCCch-------HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCC-ceEEEEE
Confidence            4488999999999999985 7799999986432       23679999999999999999999999876542 4699999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      ||++|+|.++++......+++..+..++.+++.||+|||+.+  |+||||||+|||+++++.+||+|||+++.....   
T Consensus       268 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~--ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~  345 (450)
T 1k9a_A          268 YMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN--FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDT  345 (450)
T ss_dssp             CCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEECTTSCEEECCCTTCEECC-----
T ss_pred             ecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeCCCCCHhhEEECCCCCEEEeeCCCcccccccccC
Confidence            999999999998655556899999999999999999999998  999999999999999999999999998755322   


Q ss_pred             ---hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHH
Q 006019          531 ---EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE  606 (664)
Q Consensus       531 ---~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  606 (664)
                         ...+.+||......++.++|||||||++|||+| |+.||....  ..+.......+.          ....+..++.
T Consensus       346 ~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~--~~~~~~~i~~~~----------~~~~p~~~~~  413 (450)
T 1k9a_A          346 GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP--LKDVVPRVEKGY----------KMDAPDGCPP  413 (450)
T ss_dssp             -CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSC--TTTHHHHHHTTC----------CCCCCTTCCH
T ss_pred             CCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHHcCC----------CCCCCCcCCH
Confidence               234567887777789999999999999999999 999995322  222222222221          1122334456


Q ss_pred             HHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          607 TLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       607 ~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                      .+.+++.+||+.||++||++.++++.|+++...
T Consensus       414 ~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~~  446 (450)
T 1k9a_A          414 AVYDVMKNCWHLDAATRPTFLQLREQLEHIRTH  446 (450)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence            799999999999999999999999999998753

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=1.1e-40  Score=369.14  Aligned_cols=245  Identities=21%  Similarity=0.345  Sum_probs=200.6

Q ss_pred             hhhhcccccCCCeEEEEEEECC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEE
Q 006019          372 EDFSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  450 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~l  450 (664)
                      ..+.+.||+|+||.||+|++.. +..||||.+.....      ..++|.+|+++|++++|||||+++++|...+  ..++
T Consensus       222 ~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~------~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~--~~~l  293 (495)
T 1opk_A          222 ITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM------EVEEFLKEAAVMKEIKHPNLVQLLGVCTREP--PFYI  293 (495)
T ss_dssp             EEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS--SCEE
T ss_pred             ceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc------chHHHHHHHHHHHhcCCCCEeeEEEEEecCC--cEEE
Confidence            3455899999999999999865 88999999864321      2467999999999999999999999998876  5699


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  530 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~  530 (664)
                      |||||++|+|.++++......+++..+..|+.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....
T Consensus       294 v~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~--ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~  371 (495)
T 1opk_A          294 ITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN--FIHRNLAARNCLVGENHLVKVADFGLSRLMTGD  371 (495)
T ss_dssp             EEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECGGGCEEECCTTCEECCTTC
T ss_pred             EEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCChhhEEECCCCcEEEeecccceeccCC
Confidence            999999999999998656667999999999999999999999998  999999999999999999999999999865321


Q ss_pred             ----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 006019          531 ----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  599 (664)
Q Consensus       531 ----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  599 (664)
                                ...+.+||......++.++|||||||++|||+| |+.||....  ..+.......+ ..         ..
T Consensus       372 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~--~~~~~~~~~~~-~~---------~~  439 (495)
T 1opk_A          372 TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLEKD-YR---------ME  439 (495)
T ss_dssp             CEECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC--GGGHHHHHHTT-CC---------CC
T ss_pred             ceeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCC--HHHHHHHHHcC-CC---------CC
Confidence                      124567777666678899999999999999999 999995322  22222222111 10         11


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          600 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       600 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      .+..++..+.+++.+||+.||++||+|.+|++.|+.+..
T Consensus       440 ~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~~  478 (495)
T 1opk_A          440 RPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQ  478 (495)
T ss_dssp             CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCS
T ss_pred             CCCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHh
Confidence            233345678999999999999999999999999998864

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=9e-40  Score=348.89  Aligned_cols=244  Identities=20%  Similarity=0.346  Sum_probs=191.5

Q ss_pred             hhcccccCCCeEEEEEEEC----CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeE
Q 006019          374 FSNVIGSSPIGTVYKGTLS----NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  449 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~----~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~  449 (664)
                      +.+.||+|+||.||+|++.    ++..||||.+....    .....++|.+|++++++++||||+++++++.+.+  ..+
T Consensus        49 ~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~--~~~  122 (373)
T 2qol_A           49 IDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGY----TEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSK--PVM  122 (373)
T ss_dssp             CCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTC----CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS--SCE
T ss_pred             eeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCcc----CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCC--ceE
Confidence            4588999999999999875    57789999986432    2345678999999999999999999999998776  569


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                      +||||+++|+|.++++. ....+++..+..|+.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....
T Consensus       123 lv~e~~~~~sL~~~l~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  199 (373)
T 2qol_A          123 IVTEYMENGSLDSFLRK-HDAQFTVIQLVGMLRGIASGMKYLSDMG--YVHRDLAARNILINSNLVCKVSDFGLGRVLED  199 (373)
T ss_dssp             EEEECCTTCBHHHHHHT-TTTCSCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEECTTCCEEECCC--------
T ss_pred             EEEeCCCCCcHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeCCCCCcceEEEcCCCCEEECcCcccccccc
Confidence            99999999999999973 3457999999999999999999999998  99999999999999999999999999986532


Q ss_pred             h------------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCC
Q 006019          530 A------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  596 (664)
Q Consensus       530 ~------------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  596 (664)
                      .            ...+.+||......++.++|||||||++|||+| |+.||..  ....+.......+. .        
T Consensus       200 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~--~~~~~~~~~i~~~~-~--------  268 (373)
T 2qol_A          200 DPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWE--MSNQDVIKAVDEGY-R--------  268 (373)
T ss_dssp             --------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTT--CCHHHHHHHHHTTE-E--------
T ss_pred             CCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHcCC-C--------
Confidence            1            123567787777778999999999999999998 9999943  23333333322211 0        


Q ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          597 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       597 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                       ...+..++..+.+++.+||+.||++||+|.+|++.|+++..
T Consensus       269 -~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~  309 (373)
T 2qol_A          269 -LPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIR  309 (373)
T ss_dssp             -CCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -CCCCccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHh
Confidence             01122334678999999999999999999999999999864

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.3e-39  Score=349.11  Aligned_cols=270  Identities=21%  Similarity=0.322  Sum_probs=205.0

Q ss_pred             hhhhcccccCCCeEEEEEEEC--------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEec
Q 006019          372 EDFSNVIGSSPIGTVYKGTLS--------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEE  442 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~~--------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~  442 (664)
                      ..+.+.||+|+||.||+|+..        .+..||||++....    .....+++.+|+++++++ +|||||++++++..
T Consensus        71 y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~  146 (382)
T 3tt0_A           71 LVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDA----TEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ  146 (382)
T ss_dssp             EEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             eEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeecccc----CHHHHHHHHHHHHHHHHhcCCchhhhheeeecc
Confidence            345589999999999999852        24579999886432    234457899999999999 99999999999988


Q ss_pred             CCCceeEEEEEecCCCChhhhhcccC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCe
Q 006019          443 EEPFTRMMVFEYAPNGTLFEHIHIKE--------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAV  508 (664)
Q Consensus       443 ~~~~~~~lV~Ey~~~GsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NI  508 (664)
                      .+  ..++||||+++|+|.+++....              ...+++..+.+|+.+++.||+|||+.+  |+||||||+||
T Consensus       147 ~~--~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dlkp~NI  222 (382)
T 3tt0_A          147 DG--PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKK--CIHRDLAARNV  222 (382)
T ss_dssp             SS--SCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGE
T ss_pred             CC--ceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCC--EecCCCCcceE
Confidence            77  5699999999999999987543              245999999999999999999999998  99999999999


Q ss_pred             EecCCCceEecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChH
Q 006019          509 HLTEDYAAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLE  576 (664)
Q Consensus       509 Lld~~~~~kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~  576 (664)
                      |+++++.+||+|||+++.....           ...+.+||......++.++|||||||++|||+| |+.||.  .....
T Consensus       223 ll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~--~~~~~  300 (382)
T 3tt0_A          223 LVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYP--GVPVE  300 (382)
T ss_dssp             EECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSST--TCCHH
T ss_pred             EEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCC--CCCHH
Confidence            9999999999999998755321           234667887777788999999999999999999 999994  33334


Q ss_pred             HHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCCCCCCCCCCcchHHHH
Q 006019          577 DWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEI  656 (664)
Q Consensus       577 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~~~~~~~~~~~~~~~~  656 (664)
                      +..........          ...+..+..++.+++.+||+.||++||+++||++.|+++.........+......+...
T Consensus       301 ~~~~~~~~~~~----------~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~~~~~~~~~~~~~~~~  370 (382)
T 3tt0_A          301 ELFKLLKEGHR----------MDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSNQEMGYYHHHHHHDY  370 (382)
T ss_dssp             HHHHHHHTTCC----------CCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSCSCC------------
T ss_pred             HHHHHHHcCCC----------CCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHHhcCCCCCCCccccccC
Confidence            44433332211          01122234568999999999999999999999999999998877777766666666665


Q ss_pred             hhhhc
Q 006019          657 EILST  661 (664)
Q Consensus       657 ~~~~~  661 (664)
                      ++...
T Consensus       371 ~~~~~  375 (382)
T 3tt0_A          371 DIPTT  375 (382)
T ss_dssp             -----
T ss_pred             CCCCC
Confidence            55443

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=8e-40  Score=337.75  Aligned_cols=257  Identities=18%  Similarity=0.272  Sum_probs=196.0

Q ss_pred             hhhcccccCCCeEEEEEEE-----CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCce
Q 006019          373 DFSNVIGSSPIGTVYKGTL-----SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  447 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~-----~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  447 (664)
                      .+.+.||+|+||.||+|++     .++..||||++....     ....+.|.+|++++++++||||+++++++...+...
T Consensus        13 ~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   87 (295)
T 3ugc_A           13 KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHST-----EEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRN   87 (295)
T ss_dssp             EEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCC-----HHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTS
T ss_pred             hhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCC-----HHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCc
Confidence            3458899999999999985     258899999886322     344578999999999999999999999996543225


Q ss_pred             eEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhh
Q 006019          448 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~  527 (664)
                      .++||||+++|+|.+++... ...+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++..
T Consensus        88 ~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~  164 (295)
T 3ugc_A           88 LKLIMEYLPYGSLRDYLQKH-KERIDHIKLLQYTSQICKGMEYLGTKR--YIHRDLATRNILVENENRVKIGDFGLTKVL  164 (295)
T ss_dssp             CEEEEECCTTCBHHHHHHHC-GGGCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEEEETTEEEECCCCSCC--
T ss_pred             eEEEEEeCCCCCHHHHHHhc-ccccCHHHHHHHHHHHHHHHHHHhcCC--cccCCCCHhhEEEcCCCeEEEccCcccccc
Confidence            68999999999999998643 345999999999999999999999998  999999999999999999999999999865


Q ss_pred             hhh------------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCC-------C
Q 006019          528 AMA------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-------P  588 (664)
Q Consensus       528 ~~~------------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~-------~  588 (664)
                      ...            ...+.+||......++.++||||||+++|||+||..|+...   ..++.........       .
T Consensus       165 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  241 (295)
T 3ugc_A          165 PQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSP---PAEFMRMIGNDKQGQMIVFHL  241 (295)
T ss_dssp             -----------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSH---HHHHHHHHCTTCCTHHHHHHH
T ss_pred             cCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCC---hHHHHhhhcCccccchhHHHH
Confidence            321            12356788777777899999999999999999999987321   1111110000000       0


Q ss_pred             CccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCC
Q 006019          589 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  640 (664)
Q Consensus       589 ~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~  640 (664)
                      ...+........+..++.++.+++.+||+.||++||++.|+++.|+++.+..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~l  293 (295)
T 3ugc_A          242 IELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNM  293 (295)
T ss_dssp             HHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred             HHHHhccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhc
Confidence            0000011111223444567999999999999999999999999999987643

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=1.2e-39  Score=363.04  Aligned_cols=240  Identities=15%  Similarity=0.205  Sum_probs=189.3

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCC-CchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKD-WPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~-~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      .+.||+|+||.||+|+.. +|+.||+|++....... ...........++++++.++|||||++++++.+.+  ..|+||
T Consensus       194 ~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~--~lylVm  271 (689)
T 3v5w_A          194 HRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPD--KLSFIL  271 (689)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             EEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECC--EEEEEE
Confidence            388999999999999975 68999999997543211 11122233345577788889999999999998877  789999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      |||++|+|.+++..  ...+++.....++.+|+.||+|||+++  ||||||||+|||||.++.+||+|||+|+....   
T Consensus       272 Ey~~GGdL~~~l~~--~~~l~E~~a~~y~~qIl~aL~yLH~~g--IiHRDLKPeNILld~~G~vKL~DFGlA~~~~~~~~  347 (689)
T 3v5w_A          272 DLMNGGDLHYHLSQ--HGVFSEADMRFYAAEIILGLEHMHNRF--VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKP  347 (689)
T ss_dssp             CCCCSCBHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHTTT--EECCCCSGGGEEECTTSCEEECCCTTCEECSSCCC
T ss_pred             ecCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCchHHeEEeCCCCEEecccceeeecCCCCC
Confidence            99999999999964  356999999999999999999999999  99999999999999999999999999986632   


Q ss_pred             ----hhhhcccccccC-CCCCCcCCcchhhHHHHHHHHhCCCCccCCC-CChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          530 ----AEMAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDN-GSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       530 ----~~~~~~~pe~~~-~~~~s~ksDVySfGvvl~El~tG~~P~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                          ++..+.+||... +..++.++||||+||++|||+||+.||.... ....+..........           .++..
T Consensus       348 ~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~~~-----------~~p~~  416 (689)
T 3v5w_A          348 HASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAV-----------ELPDS  416 (689)
T ss_dssp             CSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHCCC-----------CCCTT
T ss_pred             CCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhhcCCCC-----------CCCcc
Confidence                345667899875 4578999999999999999999999996432 233333333332211           11222


Q ss_pred             HHHHHHHHHHHhccCCCCCCCC-----HHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPT-----MRDIAA  631 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs-----~~ev~~  631 (664)
                      ...++.+|+.+|++.||++|++     +.||.+
T Consensus       417 ~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~  449 (689)
T 3v5w_A          417 FSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE  449 (689)
T ss_dssp             SCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTT
T ss_pred             CCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhc
Confidence            3456899999999999999998     566654

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=3.8e-39  Score=328.09  Aligned_cols=243  Identities=23%  Similarity=0.372  Sum_probs=199.5

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.+.||+|+||.||+|+..++..||+|++.....      ..++|.+|++++++++||||+++++++.+.+  ..++|||
T Consensus        14 ~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~------~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~e   85 (269)
T 4hcu_A           14 FVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM------SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQA--PICLVFE   85 (269)
T ss_dssp             EEEEEEECSSCEEEEEEETTTEEEEEEEECTTSB------CHHHHHHHHHHHHTCCCTTBCCEEEEECSSS--SEEEEEE
T ss_pred             eeheecCCCccEEEEEEecCCCeEEEEEeccccc------CHHHHHHHHHHHHhCCCCCEeeEEEEEecCC--ceEEEEE
Confidence            4578999999999999998899999999864322      2367999999999999999999999998876  5799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      |+++|+|.++++. ....+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++.....   
T Consensus        86 ~~~~~~L~~~l~~-~~~~~~~~~~~~i~~~i~~~l~~lH~~~--i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~  162 (269)
T 4hcu_A           86 FMEHGCLSDYLRT-QRGLFAAETLLGMCLDVCEGMAYLEEAC--VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYT  162 (269)
T ss_dssp             CCTTCBHHHHHHT-TTTCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHHH
T ss_pred             eCCCCcHHHHHHh-cCcccCHHHHHHHHHHHHHHHHHHHhCC--eecCCcchheEEEcCCCCEEeccccccccccccccc
Confidence            9999999999863 3456899999999999999999999999  999999999999999999999999998865321   


Q ss_pred             -------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          531 -------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       531 -------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                             ...+.+||......++.++||||||+++|||+| |+.||.  .....+..........    ..      .+.
T Consensus       163 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~--~~~~~~~~~~~~~~~~----~~------~~~  230 (269)
T 4hcu_A          163 SSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYE--NRSNSEVVEDISTGFR----LY------KPR  230 (269)
T ss_dssp             STTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTT--TCCHHHHHHHHHTTCC----CC------CCT
T ss_pred             cccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCC--CCCHHHHHHHHhcCcc----CC------CCC
Confidence                   123567787776778999999999999999999 999994  3333344333332211    01      112


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          603 EQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                      .....+.+++.+||+.||++||++.++++.|+++.+.
T Consensus       231 ~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~~  267 (269)
T 4hcu_A          231 LASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES  267 (269)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHHHc
Confidence            2235688999999999999999999999999998753

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.6e-39  Score=336.51  Aligned_cols=246  Identities=20%  Similarity=0.278  Sum_probs=196.5

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. ++..||+|++...     .....+.|.+|++++++++||||+++++++.+.+  ..++||
T Consensus        14 ~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~-----~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~lv~   86 (310)
T 3s95_A           14 HGEVLGKGCFGQAIKVTHRETGEVMVMKELIRF-----DEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDK--RLNFIT   86 (310)
T ss_dssp             EEEEEECCSSEEEEEEEETTTCCEEEEEEESCC-----CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             ccceecCCCCEEEEEEEECCCCcEEEEEEeccC-----CHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCC--eeEEEE
Confidence            3478999999999999975 5889999987432     2345678999999999999999999999999877  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++|+|.++++. ....+++..+..|+.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....   
T Consensus        87 e~~~~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~al~~lH~~~--ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  163 (310)
T 3s95_A           87 EYIKGGTLRGIIKS-MDSQYPWSQRVSFAKDIASGMAYLHSMN--IIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKT  163 (310)
T ss_dssp             ECCTTCBHHHHHHH-CCTTSCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSTTSEEECTTSCEEECCCTTCEECC----
T ss_pred             EecCCCcHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHhCC--ccCCCCCcCeEEECCCCCEEEeecccceecccccc
Confidence            99999999999974 3456999999999999999999999999  99999999999999999999999999875421   


Q ss_pred             --------------------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCC
Q 006019          530 --------------------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL  589 (664)
Q Consensus       530 --------------------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~  589 (664)
                                          ....+.+||......++.++|||||||++|||+||..|+..........       ....
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~-------~~~~  236 (310)
T 3s95_A          164 QPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDF-------GLNV  236 (310)
T ss_dssp             ----------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTS-------SBCH
T ss_pred             cccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHH-------hhhh
Confidence                                1233667888888888999999999999999999999984221100000       0000


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          590 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       590 ~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                      ....+..   .+..++..+.+++.+||+.||++||++.++++.|+++...
T Consensus       237 ~~~~~~~---~~~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~  283 (310)
T 3s95_A          237 RGFLDRY---CPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMH  283 (310)
T ss_dssp             HHHHHHT---CCTTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             hcccccc---CCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence            0000000   1122234588999999999999999999999999998654

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=1.7e-38  Score=332.12  Aligned_cols=251  Identities=19%  Similarity=0.257  Sum_probs=201.4

Q ss_pred             CCCCHHHHHHHHhh------------hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHh
Q 006019          360 PKLKRSELEAACED------------FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLS  426 (664)
Q Consensus       360 ~~~~~~el~~~~~~------------~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~  426 (664)
                      +.++.+++..+++.            +.+.||+|+||.||+|+.. +|+.||||++......     ..+.+.+|+.+++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~-----~~~~~~~E~~~l~   97 (321)
T 2c30_A           23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQ-----RRELLFNEVVIMR   97 (321)
T ss_dssp             --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC-----SHHHHHHHHHHHT
T ss_pred             CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchh-----HHHHHHHHHHHHH
Confidence            45778888887764            2368999999999999976 6999999998754322     2467899999999


Q ss_pred             ccCCCcccceEEEEecCCCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCC
Q 006019          427 KVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSS  506 (664)
Q Consensus       427 ~l~H~niv~l~g~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~  506 (664)
                      +++||||+++++++...+  ..++||||+++|+|.+++..   ..+++..+..++.+++.||+|||+.+  |+||||||+
T Consensus        98 ~l~h~niv~~~~~~~~~~--~~~lv~e~~~~~~L~~~l~~---~~l~~~~~~~i~~qi~~~L~~LH~~~--ivH~Dlkp~  170 (321)
T 2c30_A           98 DYQHFNVVEMYKSYLVGE--ELWVLMEFLQGGALTDIVSQ---VRLNEEQIATVCEAVLQALAYLHAQG--VIHRDIKSD  170 (321)
T ss_dssp             TCCCTTBCCEEEEEEETT--EEEEEECCCCSCBHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGG
T ss_pred             hCCCCCcceEEEEEEECC--EEEEEEecCCCCCHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHH
Confidence            999999999999998877  67999999999999999853   46999999999999999999999998  999999999


Q ss_pred             CeEecCCCceEecccCchhhhhh---------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHH
Q 006019          507 AVHLTEDYAAKLSDLSFWNEIAM---------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLED  577 (664)
Q Consensus       507 NILld~~~~~kl~DfGla~~~~~---------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~  577 (664)
                      |||++.++.+||+|||+++....         ....+.+||......++.++|||||||++|||+||+.||..  ....+
T Consensus       171 NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~--~~~~~  248 (321)
T 2c30_A          171 SILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFS--DSPVQ  248 (321)
T ss_dssp             GEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTT--SCHHH
T ss_pred             HEEECCCCcEEEeeeeeeeecccCccccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCC--CCHHH
Confidence            99999999999999999875532         23346678888778889999999999999999999999943  22333


Q ss_pred             HHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          578 WAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       578 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      ..........       +... .....+..+.+++.+||+.||++||++.++++.
T Consensus       249 ~~~~~~~~~~-------~~~~-~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h  295 (321)
T 2c30_A          249 AMKRLRDSPP-------PKLK-NSHKVSPVLRDFLERMLVRDPQERATAQELLDH  295 (321)
T ss_dssp             HHHHHHHSSC-------CCCT-TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             HHHHHhcCCC-------CCcC-ccccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            3332222211       1111 112234568899999999999999999998873

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=2.8e-39  Score=338.20  Aligned_cols=247  Identities=19%  Similarity=0.271  Sum_probs=192.9

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC--ceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP--FTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~--~~~~lV  451 (664)
                      +.+.||+|+||.||+|++. ++.||||++....      .....+..|+.++++++|||||++++++.....  ...++|
T Consensus        28 ~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~------~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv  100 (322)
T 3soc_A           28 LLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQD------KQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLI  100 (322)
T ss_dssp             EEEEEECSTTCEEEEEEET-TEEEEEEEECGGG------HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred             hhheecccCceEEEEEEEC-CCEEEEEEeecCc------hHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEE
Confidence            4478999999999999985 7899999985432      234556779999999999999999999987542  246899


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcC----------CCCeEEeCcCCCCeEecCCCceEeccc
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL----------NPPIAHNYLNSSAVHLTEDYAAKLSDL  521 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~----------~~~ivHrDLk~~NILld~~~~~kl~Df  521 (664)
                      |||+++|+|.++++.   ..++|..+..|+.+++.||+|||+.          +  |+||||||+|||++.++.+||+||
T Consensus       101 ~e~~~~g~L~~~l~~---~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~--ivH~Dlkp~Nill~~~~~~kL~DF  175 (322)
T 3soc_A          101 TAFHEKGSLSDFLKA---NVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPA--ISHRDIKSKNVLLKNNLTACIADF  175 (322)
T ss_dssp             EECCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECE--EECSCCSGGGEEECTTCCEEECCC
T ss_pred             EecCCCCCHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCC--EEeCCCChHhEEECCCCeEEEccC
Confidence            999999999999964   3499999999999999999999988          6  999999999999999999999999


Q ss_pred             Cchhhhhh-----------hhhhcccccccCC-----CCCCcCCcchhhHHHHHHHHhCCCCccCCCC------------
Q 006019          522 SFWNEIAM-----------AEMAATSKKLSSA-----PSASLESNVYNFGVLLFEMVTGRLPYLVDNG------------  573 (664)
Q Consensus       522 Gla~~~~~-----------~~~~~~~pe~~~~-----~~~s~ksDVySfGvvl~El~tG~~P~~~~~~------------  573 (664)
                      |+++....           ....+.+||....     ..++.++|||||||++|||+||+.||.....            
T Consensus       176 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~  255 (322)
T 3soc_A          176 GLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQ  255 (322)
T ss_dssp             TTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCS
T ss_pred             CcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhcc
Confidence            99965432           1334556776654     3456788999999999999999999953221            


Q ss_pred             --ChHHHHHHHhcCCCCCccccCCCCCC--CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          574 --SLEDWAADYLSGVQPLQQFVDPTLSS--FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       574 --~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                        ...++.......      ...+.+..  .....+.++.+++.+||+.||++|||+.||++.|+++.+
T Consensus       256 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~  318 (322)
T 3soc_A          256 HPSLEDMQEVVVHK------KKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQR  318 (322)
T ss_dssp             SCCHHHHHHHHTTS------CCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCchhhhhhhhhcc------cCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence              112222211111      11111111  123456779999999999999999999999999999865

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=3.7e-39  Score=327.90  Aligned_cols=250  Identities=22%  Similarity=0.361  Sum_probs=198.5

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.+.||+|+||.||+|++. +..+|||++.....   .....+.|.+|++++++++||||+++++++.+.+....++|||
T Consensus        14 ~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e   89 (271)
T 3kmu_A           14 FLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDW---STRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITH   89 (271)
T ss_dssp             EEEEEEEETTEEEEEEEET-TEEEEEEEECCTTC---CHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEEE
T ss_pred             HHHHhcCCCcceEEEEEEC-CeeEEEEEeccccc---CHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeeec
Confidence            4578999999999999985 88899999875432   2345578999999999999999999999998763336799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|+|.++++......+++..+..|+.+++.||+|||+.+++++||||||+||+++.++.++|+|||++.....    
T Consensus        90 ~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~~~~~~  169 (271)
T 3kmu_A           90 WMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQSPGRM  169 (271)
T ss_dssp             CCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTSCTTCB
T ss_pred             ccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCceecCCCccceEEEcCCcceeEEeccceeeecccCcc
Confidence            9999999999986555579999999999999999999999888899999999999999999999998887654322    


Q ss_pred             hhhhcccccccCCCCC---CcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHH
Q 006019          530 AEMAATSKKLSSAPSA---SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE  606 (664)
Q Consensus       530 ~~~~~~~pe~~~~~~~---s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  606 (664)
                      ....+.+||.......   +.++||||||+++|||+||+.||..  ....+...........      +   ..+...+.
T Consensus       170 ~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~--~~~~~~~~~~~~~~~~------~---~~~~~~~~  238 (271)
T 3kmu_A          170 YAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFAD--LSNMEIGMKVALEGLR------P---TIPPGISP  238 (271)
T ss_dssp             SCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTT--SCHHHHHHHHHHSCCC------C---CCCTTCCH
T ss_pred             CCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccc--cChHHHHHHHHhcCCC------C---CCCCCCCH
Confidence            2345567776654433   3479999999999999999999943  2333333332222111      1   11223345


Q ss_pred             HHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          607 TLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       607 ~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      .+.+++.+||+.||++||++.++++.|+++.+
T Consensus       239 ~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~  270 (271)
T 3kmu_A          239 HVSKLMKICMNEDPAKRPKFDMIVPILEKMQD  270 (271)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence            68999999999999999999999999998864

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=2.2e-39  Score=361.98  Aligned_cols=246  Identities=23%  Similarity=0.363  Sum_probs=201.7

Q ss_pred             hhhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      .+.+.||+|+||.||+|++.++..||||++.....      ..++|.+|+++|++++|+|||++++++.+ +  ..++||
T Consensus       270 ~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~------~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~--~~~lv~  340 (535)
T 2h8h_A          270 RLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM------SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-E--PIYIVT  340 (535)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSS------CHHHHHHHHHHHHHCCCTTBCCEEEEECS-S--SCEEEE
T ss_pred             hhheecccCCCeEEEEEEECCCceEEEEEeCCCCC------CHHHHHHHHHHHHhCCCCCEeeEEEEEee-c--cceEee
Confidence            45588999999999999998888999999864331      24679999999999999999999999976 3  468999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      |||++|+|.++++......+++..+..|+.+|+.||+|||+++  |+||||||+|||+++++.+||+|||+++.....  
T Consensus       341 e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~--ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~  418 (535)
T 2h8h_A          341 EYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN--YVHRDLRAANILVGENLVCKVADFGLARLIEDNEY  418 (535)
T ss_dssp             CCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHH
T ss_pred             ehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeCCCCCHhhEEEcCCCcEEEcccccceecCCCce
Confidence            9999999999997544456999999999999999999999998  999999999999999999999999999865321  


Q ss_pred             --------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 006019          531 --------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  601 (664)
Q Consensus       531 --------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  601 (664)
                              ...+.+||......++.++|||||||++|||+| |+.||..  ....+.......+. .         ...+
T Consensus       419 ~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~--~~~~~~~~~i~~~~-~---------~~~~  486 (535)
T 2h8h_A          419 TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPG--MVNREVLDQVERGY-R---------MPCP  486 (535)
T ss_dssp             HTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTT--CCHHHHHHHHHTTC-C---------CCCC
T ss_pred             ecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHcCC-C---------CCCC
Confidence                    124567777766778999999999999999999 9999942  33333333332221 1         1122


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCC
Q 006019          602 EEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP  641 (664)
Q Consensus       602 ~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~  641 (664)
                      ..++..+.+++.+||+.||++||+|.+|++.|+++.....
T Consensus       487 ~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~~~  526 (535)
T 2h8h_A          487 PECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTE  526 (535)
T ss_dssp             TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCCCS
T ss_pred             CCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhccC
Confidence            3344678999999999999999999999999999876543

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=2.5e-39  Score=329.17  Aligned_cols=244  Identities=21%  Similarity=0.349  Sum_probs=197.6

Q ss_pred             hhhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      .+.+.||+|+||.||+|+..++..||+|++.....      ..+++.+|++++++++||||+++++++.+.+  ..++||
T Consensus        11 ~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~------~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   82 (268)
T 3sxs_A           11 TLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM------SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEY--PIYIVT   82 (268)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTB------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS--SEEEEE
T ss_pred             eeeeeeccCCCceEEEEEecCceeEEEEEeccCCC------cHHHHHHHHHHHHhCCCCCEeeEEEEEccCC--ceEEEE
Confidence            34588999999999999999888999999864332      2367999999999999999999999998776  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++|+|.+++... ...+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++.....  
T Consensus        83 e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~--i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~  159 (268)
T 3sxs_A           83 EYISNGCLLNYLRSH-GKGLEPSQLLEMCYDVCEGMAFLESHQ--FIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQY  159 (268)
T ss_dssp             ECCTTCBHHHHHHHH-GGGCCHHHHHHHHHHHHHHHHHHHHTT--EEESSCSGGGEEECTTCCEEECCTTCEEECCTTCE
T ss_pred             EccCCCcHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCcCcceEEECCCCCEEEccCccceecchhhh
Confidence            999999999998642 345999999999999999999999998  999999999999999999999999998755322  


Q ss_pred             --------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 006019          531 --------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  601 (664)
Q Consensus       531 --------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  601 (664)
                              ...+.+||......++.++||||||+++|||+| |+.||..  ....+..........    ...      +
T Consensus       160 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~--~~~~~~~~~~~~~~~----~~~------~  227 (268)
T 3sxs_A          160 VSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDL--YTNSEVVLKVSQGHR----LYR------P  227 (268)
T ss_dssp             EECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTT--SCHHHHHHHHHTTCC----CCC------C
T ss_pred             hcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccc--cChHHHHHHHHcCCC----CCC------C
Confidence                    123556776666667889999999999999999 9999942  233333333322211    111      1


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          602 EEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       602 ~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                      ...+..+.+++.+||+.||++||++.++++.|+.+.+.
T Consensus       228 ~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~  265 (268)
T 3sxs_A          228 HLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLREK  265 (268)
T ss_dssp             TTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC-
T ss_pred             CcChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhhc
Confidence            12235688999999999999999999999999998754

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=9.9e-39  Score=336.74  Aligned_cols=247  Identities=21%  Similarity=0.335  Sum_probs=199.2

Q ss_pred             hhcccccCCCeEEEEEEEC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCce
Q 006019          374 FSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  447 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  447 (664)
                      +.+.||+|+||.||+|+..      ++..||||.+....    .....+.|.+|++++++++||||+++++++...+  .
T Consensus        51 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~  124 (343)
T 1luf_A           51 YVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA----SADMQADFQREAALMAEFDNPNIVKLLGVCAVGK--P  124 (343)
T ss_dssp             EEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC----CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSS--S
T ss_pred             eeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEecccc----CHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCC--c
Confidence            4478999999999999974      34789999986332    2345678999999999999999999999998776  5


Q ss_pred             eEEEEEecCCCChhhhhcccC----------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCC
Q 006019          448 RMMVFEYAPNGTLFEHIHIKE----------------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNS  505 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~~----------------------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~  505 (664)
                      .++||||+++|+|.++++...                      ...+++..+..|+.+++.||+|||+.+  |+||||||
T Consensus       125 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~--ivH~Dlkp  202 (343)
T 1luf_A          125 MCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERK--FVHRDLAT  202 (343)
T ss_dssp             CEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSG
T ss_pred             eEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCc
Confidence            699999999999999986432                      256999999999999999999999998  99999999


Q ss_pred             CCeEecCCCceEecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCC
Q 006019          506 SAVHLTEDYAAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNG  573 (664)
Q Consensus       506 ~NILld~~~~~kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~  573 (664)
                      +|||++.++.+||+|||+++.....           ...+.+||......++.++||||||+++|||+| |+.||..  .
T Consensus       203 ~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~--~  280 (343)
T 1luf_A          203 RNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYG--M  280 (343)
T ss_dssp             GGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTT--S
T ss_pred             ceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCC--C
Confidence            9999999999999999999865322           123567777666678999999999999999999 9999943  2


Q ss_pred             ChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCC
Q 006019          574 SLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  640 (664)
Q Consensus       574 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~  640 (664)
                      ...+.......+.          ....+..++..+.+++.+||+.||++||++.++++.|+++.+..
T Consensus       281 ~~~~~~~~~~~~~----------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~  337 (343)
T 1luf_A          281 AHEEVIYYVRDGN----------ILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCERA  337 (343)
T ss_dssp             CHHHHHHHHHTTC----------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC--
T ss_pred             ChHHHHHHHhCCC----------cCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhhh
Confidence            3333333332221          11122334457899999999999999999999999999987643

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=2.1e-38  Score=325.72  Aligned_cols=248  Identities=24%  Similarity=0.431  Sum_probs=195.8

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhH---HHHHHHHHHHHhccCCCcccceEEEEecCCCceeE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNL---EVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  449 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~---~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~  449 (664)
                      +.+.||+|+||.||+|+.. ++..||+|++........ ...   .+.|.+|++++++++||||+++++++.+..    +
T Consensus        23 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~----~   97 (287)
T 4f0f_A           23 YEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGE-TEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP----R   97 (287)
T ss_dssp             EEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCC-HHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT----E
T ss_pred             ehhccccCCceeEEEEEEcCCceEEEEEEeeccccccc-hhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC----e
Confidence            4578999999999999974 689999999865443321 111   167999999999999999999999996543    6


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCc-----eEecccCch
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA-----AKLSDLSFW  524 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~-----~kl~DfGla  524 (664)
                      +||||+++|+|.+++.. ....+++..+..++.+++.||+|||+.+++|+||||||+|||++.++.     +||+|||++
T Consensus        98 lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~lH~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~~  176 (287)
T 4f0f_A           98 MVMEFVPCGDLYHRLLD-KAHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLS  176 (287)
T ss_dssp             EEEECCTTCBHHHHHHC-TTSCCCHHHHHHHHHHHHHHHHHHHTSSSCCBCSCCSGGGEEESCCCTTCSCCEEECCCTTC
T ss_pred             EEEEecCCCCHHHHHhc-ccCCccHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcceEEEeccCCCCceeEEeCCCCcc
Confidence            99999999999998863 345799999999999999999999998878999999999999988776     999999998


Q ss_pred             hhhhhh------hhhccccccc--CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCC
Q 006019          525 NEIAMA------EMAATSKKLS--SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  596 (664)
Q Consensus       525 ~~~~~~------~~~~~~pe~~--~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  596 (664)
                      +.....      ...+.+||..  ....++.++|||||||++|||+||+.||...................  .    + 
T Consensus       177 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~--~----~-  249 (287)
T 4f0f_A          177 QQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIREEGL--R----P-  249 (287)
T ss_dssp             BCCSSCEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHHSCC--C----C-
T ss_pred             ccccccccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhccCC--C----C-
Confidence            755322      2345678876  34456889999999999999999999996544433333333222111  0    1 


Q ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 006019          597 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  636 (664)
Q Consensus       597 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i  636 (664)
                        ..+...+..+.+++.+||+.||++||++.++++.|+++
T Consensus       250 --~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l  287 (287)
T 4f0f_A          250 --TIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL  287 (287)
T ss_dssp             --CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred             --CCCcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence              12233346789999999999999999999999999874

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=3.3e-39  Score=331.00  Aligned_cols=242  Identities=19%  Similarity=0.335  Sum_probs=195.1

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.+.||+|+||.||+|.+.++..||+|++.....      ..++|.+|++++++++||||+++++++.+.+  ..++|||
T Consensus        28 ~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~------~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~e   99 (283)
T 3gen_A           28 FLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM------SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQR--PIFIITE   99 (283)
T ss_dssp             EEEECC---CEEEEEEEETTTEEEEEEEECTTSB------CHHHHHHHHHHHHTCCCTTBCCEEEEECSSS--SEEEEEC
T ss_pred             hHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC------CHHHHHHHHHHHhcCCCCCEeeEEEEEecCC--CeEEEEe
Confidence            4588999999999999999888999999864322      2367999999999999999999999998776  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhhh--
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE--  531 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~~--  531 (664)
                      |+++|+|.+++... ...+++..+..++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||+++......  
T Consensus       100 ~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~--i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~  176 (283)
T 3gen_A          100 YMANGCLLNYLREM-RHRFQTQQLLEMCKDVCEAMEYLESKQ--FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYT  176 (283)
T ss_dssp             CCTTCBHHHHHHCG-GGCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHHH
T ss_pred             ccCCCcHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHHCC--ccCCCCccceEEEcCCCCEEEccccccccccccccc
Confidence            99999999998642 346999999999999999999999998  9999999999999999999999999987653221  


Q ss_pred             --------hhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          532 --------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       532 --------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                              ..+.+||......++.++||||||+++|||+| |+.||..  ....+...........          ..+.
T Consensus       177 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~--~~~~~~~~~~~~~~~~----------~~~~  244 (283)
T 3gen_A          177 SSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYER--FTNSETAEHIAQGLRL----------YRPH  244 (283)
T ss_dssp             STTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTT--SCHHHHHHHHHTTCCC----------CCCT
T ss_pred             cccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccc--cChhHHHHHHhcccCC----------CCCC
Confidence                    23567777766778999999999999999999 9999943  2233333333222111          1111


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          603 EQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      .....+.+++.+||+.||++||++.++++.|+++.+
T Consensus       245 ~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~  280 (283)
T 3gen_A          245 LASEKVYTIMYSCWHEKADERPTFKILLSNILDVMD  280 (283)
T ss_dssp             TCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHhh
Confidence            223568899999999999999999999999999875

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=1.6e-38  Score=333.06  Aligned_cols=237  Identities=22%  Similarity=0.323  Sum_probs=194.0

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+. .+|+.||||++......   ....+.+.+|++++++++||||+++++++...+  ..++||
T Consensus        19 ~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~--~~~lv~   93 (328)
T 3fe3_A           19 LLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLN---PTSLQKLFREVRIMKILNHPNIVKLFEVIETEK--TLYLIM   93 (328)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC---HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             EEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCC---HHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECC--EEEEEE
Confidence            347899999999999997 57899999998754322   344567899999999999999999999998877  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++|+|.+++...  ..+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....  
T Consensus        94 e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~al~~lH~~~--ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~  169 (328)
T 3fe3_A           94 EYASGGEVFDYLVAH--GRMKEKEARSKFRQIVSAVQYCHQKR--IVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGK  169 (328)
T ss_dssp             CCCTTCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSCG
T ss_pred             ECCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCC--EeccCCCHHHEEEcCCCCEEEeeccCceecCCCCc
Confidence            999999999998643  45899999999999999999999998  999999999999999999999999999765321  


Q ss_pred             ------hhhcccccccCCCCC-CcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          531 ------EMAATSKKLSSAPSA-SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       531 ------~~~~~~pe~~~~~~~-s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                            ...+.+||......+ +.++|||||||++|||+||+.||.  +.+..+.......+....           +..
T Consensus       170 ~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~--~~~~~~~~~~i~~~~~~~-----------p~~  236 (328)
T 3fe3_A          170 LDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFD--GQNLKELRERVLRGKYRI-----------PFY  236 (328)
T ss_dssp             GGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSC--CSSHHHHHHHHHHCCCCC-----------CTT
T ss_pred             cccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCC--CCCHHHHHHHHHhCCCCC-----------CCC
Confidence                  234567777665555 478999999999999999999994  344455544444432211           112


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      ....+.+++.+||+.||++|||+.|+++.
T Consensus       237 ~s~~~~~li~~~L~~dP~~R~t~~eil~h  265 (328)
T 3fe3_A          237 MSTDCENLLKRFLVLNPIKRGTLEQIMKD  265 (328)
T ss_dssp             SCHHHHHHHHHHCCSSTTTSCCHHHHTTC
T ss_pred             CCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            23568899999999999999999998763

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.6e-39  Score=344.01  Aligned_cols=251  Identities=24%  Similarity=0.353  Sum_probs=190.4

Q ss_pred             hhcccccCCCeEEEEEEEC--CC--cEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeE
Q 006019          374 FSNVIGSSPIGTVYKGTLS--NG--VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  449 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~--~~--~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~  449 (664)
                      +.+.||+|+||.||+|++.  ++  ..||||.+....    .....++|.+|+.++++++||||++++++|.+.+. ..+
T Consensus        93 ~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~-~~~  167 (373)
T 3c1x_A           93 FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT----DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEG-SPL  167 (373)
T ss_dssp             EEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCS----CSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSS-CCE
T ss_pred             cCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCC----CHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCC-CeE
Confidence            4578999999999999963  22  357888775322    12446789999999999999999999999865432 468


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                      +||||+++|+|.++++. ....+++..+..++.+++.||+|||+.+  |+||||||+|||+++++.+||+|||+++....
T Consensus       168 lv~e~~~~g~L~~~l~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~  244 (373)
T 3c1x_A          168 VVLPYMKHGDLRNFIRN-ETHNPTVKDLIGFGLQVAKGMKFLASKK--FVHRDLAARNCMLDEKFTVKVADFGLARDMYD  244 (373)
T ss_dssp             EEEECCTTCBHHHHHHC-TTCCCBHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEECTTCCEEECCC--------
T ss_pred             EEEECCCCCCHHHHHhh-cccCCCHHHHHHHHHHHHHHHHHHHHCC--EecCccchheEEECCCCCEEEeeccccccccc
Confidence            99999999999999963 3456899999999999999999999998  99999999999999999999999999985532


Q ss_pred             h-------------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCC
Q 006019          530 A-------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  595 (664)
Q Consensus       530 ~-------------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~  595 (664)
                      .             ...+.+||......++.++|||||||++|||+| |..||.....  .+.......+..        
T Consensus       245 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~--~~~~~~~~~~~~--------  314 (373)
T 3c1x_A          245 KEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNT--FDITVYLLQGRR--------  314 (373)
T ss_dssp             -------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCS--SCHHHHHHTTCC--------
T ss_pred             cccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCH--HHHHHHHHcCCC--------
Confidence            1             123567777777778999999999999999999 6777743221  111112222111        


Q ss_pred             CCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCCCCC
Q 006019          596 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGA  644 (664)
Q Consensus       596 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~~~~  644 (664)
                        ...+..++..+.+++.+||+.||++||++.++++.|+++........
T Consensus       315 --~~~p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~~~~~  361 (373)
T 3c1x_A          315 --LLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGEH  361 (373)
T ss_dssp             --CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCCSCC
T ss_pred             --CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhccccc
Confidence              11122334578999999999999999999999999999987655443

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=3.4e-39  Score=338.36  Aligned_cols=243  Identities=17%  Similarity=0.289  Sum_probs=189.2

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcE----EEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVE----IAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~----vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      +.+.||+|+||.||+|++. ++..    ||+|.+.....    ....++|.+|++++++++||||++++++|....   .
T Consensus        19 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~---~   91 (327)
T 3poz_A           19 KIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATS----PKANKEILDEAYVMASVDNPHVCRLLGICLTST---V   91 (327)
T ss_dssp             EEEEEEEETTEEEEEEEECC----CCEEEEEEEC-----------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS---E
T ss_pred             cceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccC----HHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC---e
Confidence            3478999999999999964 4444    46666643221    233578999999999999999999999998754   5


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++|+||+++|+|.++++. ....+++..+..|+.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...
T Consensus        92 ~~v~e~~~~g~L~~~l~~-~~~~~~~~~~~~~~~qi~~~l~~LH~~~--ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~  168 (327)
T 3poz_A           92 QLITQLMPFGCLLDYVRE-HKDNIGSQYLLNWCVQIAKGMNYLEDRR--LVHRDLAARNVLVKTPQHVKITDFGLAKLLG  168 (327)
T ss_dssp             EEEEECCTTCBHHHHHHH-STTSCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEEETTEEEECCTTHHHHHT
T ss_pred             EEEEEecCCCcHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHhhCC--eeCCCCChheEEECCCCCEEEccCcceeEcc
Confidence            799999999999999874 3456999999999999999999999998  9999999999999999999999999998763


Q ss_pred             hh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCC
Q 006019          529 MA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  596 (664)
Q Consensus       529 ~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  596 (664)
                      ..           ...+.+||......++.++|||||||++|||+| |+.||.....  .+........ ..        
T Consensus       169 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~--~~~~~~~~~~-~~--------  237 (327)
T 3poz_A          169 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA--SEISSILEKG-ER--------  237 (327)
T ss_dssp             TTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG--GGHHHHHHTT-CC--------
T ss_pred             CCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCH--HHHHHHHHcC-CC--------
Confidence            21           124567787777788999999999999999999 9999953321  1221111111 11        


Q ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          597 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       597 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                       ...+..+...+.+++.+||+.||++||+|.++++.|+.+..
T Consensus       238 -~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~  278 (327)
T 3poz_A          238 -LPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR  278 (327)
T ss_dssp             -CCCCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHT
T ss_pred             -CCCCccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence             11122334568899999999999999999999999998864

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.2e-38  Score=327.88  Aligned_cols=248  Identities=21%  Similarity=0.378  Sum_probs=193.4

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.+.||+|+||.||+|++. +..||||++..       ....+.|.+|++++++++||||+++++++.+    ..++|||
T Consensus        12 ~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~-------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~----~~~lv~e   79 (307)
T 2eva_A           12 VEEVVGRGAFGVVCKAKWR-AKDVAIKQIES-------ESERKAFIVELRQLSRVNHPNIVKLYGACLN----PVCLVME   79 (307)
T ss_dssp             EEEEEECCSSSEEEEEEET-TEEEEEEECSS-------TTHHHHHHHHHHHHHHCCCTTBCCEEEBCTT----TTEEEEE
T ss_pred             eeeEeecCCCceEEEEEEC-CeeEEEEEecC-------hhHHHHHHHHHHHHhcCCCCCcCeEEEEEcC----CcEEEEE
Confidence            4578999999999999985 68899998742       1235689999999999999999999998864    3489999


Q ss_pred             ecCCCChhhhhcccCC-CCCCHHHHHHHHHHHHHHHHHhhcCC-CCeEEeCcCCCCeEecCCCc-eEecccCchhhhhh-
Q 006019          454 YAPNGTLFEHIHIKES-EHLDWGMRLRIAMGMAYCLEHMHQLN-PPIAHNYLNSSAVHLTEDYA-AKLSDLSFWNEIAM-  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~-~~l~~~~~~~ia~~ia~gL~yLH~~~-~~ivHrDLk~~NILld~~~~-~kl~DfGla~~~~~-  529 (664)
                      |+++|+|.++++.... ..+++..+..++.++++||+|||+.+ ..|+||||||+|||++.++. +||+|||+++.... 
T Consensus        80 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~  159 (307)
T 2eva_A           80 YAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH  159 (307)
T ss_dssp             CCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC-------
T ss_pred             cCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccc
Confidence            9999999999974432 35789999999999999999999832 23999999999999998886 79999999876532 


Q ss_pred             -----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          530 -----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       530 -----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                           ....+.+||......++.++||||||+++|||+||+.||...................          .......
T Consensus       160 ~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~----------~~~~~~~  229 (307)
T 2eva_A          160 MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTR----------PPLIKNL  229 (307)
T ss_dssp             -----CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHTTCC----------CCCBTTC
T ss_pred             cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhcCCC----------CCccccc
Confidence                 2334567888877888999999999999999999999996444333333222222111          1111223


Q ss_pred             HHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCCCC
Q 006019          605 LETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDG  643 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~~~  643 (664)
                      +..+.+++.+||+.||++||++.++++.|+.+....+..
T Consensus       230 ~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~~  268 (307)
T 2eva_A          230 PKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPGA  268 (307)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGCCCT
T ss_pred             CHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhccCC
Confidence            356889999999999999999999999999998765543

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.5e-38  Score=338.89  Aligned_cols=247  Identities=21%  Similarity=0.295  Sum_probs=197.8

Q ss_pred             hhhcccccCCCeEEEEEEEC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCc
Q 006019          373 DFSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF  446 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  446 (664)
                      .+.+.||+|+||.||+|++.      ++..||||++....    ......+|.+|+.++++++|||||++++++.+..  
T Consensus        74 ~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~--  147 (367)
T 3l9p_A           74 TLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVC----SEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL--  147 (367)
T ss_dssp             EEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSC----CHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS--
T ss_pred             EEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEeccccc----ChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCC--
Confidence            34588999999999999953      46689999985321    2345567999999999999999999999998776  


Q ss_pred             eeEEEEEecCCCChhhhhcccC-----CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC---ceEe
Q 006019          447 TRMMVFEYAPNGTLFEHIHIKE-----SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY---AAKL  518 (664)
Q Consensus       447 ~~~lV~Ey~~~GsL~~~l~~~~-----~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~---~~kl  518 (664)
                      ..++||||+++|+|.++++...     ...+++..+..|+.+++.||+|||+.+  |+||||||+|||++.++   .+||
T Consensus       148 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivHrDlkp~NIll~~~~~~~~~kL  225 (367)
T 3l9p_A          148 PRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENH--FIHRDIAARNCLLTCPGPGRVAKI  225 (367)
T ss_dssp             SCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEESCSSTTCCEEE
T ss_pred             CCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCC--eeCCCCChhhEEEecCCCCceEEE
Confidence            5699999999999999987432     246999999999999999999999999  99999999999999554   5999


Q ss_pred             cccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCC
Q 006019          519 SDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGV  586 (664)
Q Consensus       519 ~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~  586 (664)
                      +|||+++.....           ...+.+||......++.++|||||||++|||+| |+.||..  ....+.......+.
T Consensus       226 ~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~--~~~~~~~~~i~~~~  303 (367)
T 3l9p_A          226 GDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPS--KSNQEVLEFVTSGG  303 (367)
T ss_dssp             CCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTT--CCHHHHHHHHHTTC
T ss_pred             CCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHcCC
Confidence            999999865322           224567887767778999999999999999998 9999943  33333333333221


Q ss_pred             CCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          587 QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       587 ~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                      .          ...+..++..+.+++.+||+.||++||++.+|++.|+.+...
T Consensus       304 ~----------~~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~  346 (367)
T 3l9p_A          304 R----------MDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD  346 (367)
T ss_dssp             C----------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             C----------CCCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhC
Confidence            1          111223345688999999999999999999999999988753

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=2.4e-38  Score=327.27  Aligned_cols=236  Identities=19%  Similarity=0.302  Sum_probs=191.3

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+. .+++.||||++.......     .+.+.+|+.++++++||||+++++++...+  ..++||
T Consensus        24 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-----~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~lv~   96 (297)
T 3fxz_A           24 RFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK-----KELIINEILVMRENKNPNIVNYLDSYLVGD--ELWVVM   96 (297)
T ss_dssp             CCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSC-----HHHHHHHHHHHHHCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             eeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccH-----HHHHHHHHHHHhcCCCCCCCeEeEEEEECC--EEEEEE
Confidence            347899999999999995 568999999987554322     467899999999999999999999998877  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++|+|.+++..   ..+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....   
T Consensus        97 e~~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  171 (297)
T 3fxz_A           97 EYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLHSNQ--VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS  171 (297)
T ss_dssp             ECCTTCBHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTCCEEECCCTTCEECCSTTC
T ss_pred             ECCCCCCHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHhCC--ceeCCCCHHHEEECCCCCEEEeeCCCceecCCccc
Confidence            99999999999864   35899999999999999999999998  99999999999999999999999999875532   


Q ss_pred             ------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          530 ------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       530 ------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                            ....+.+||......++.++|||||||++|||+||+.||...  ...+...........  .      ...+..
T Consensus       172 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~--~~~~~~~~~~~~~~~--~------~~~~~~  241 (297)
T 3fxz_A          172 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNE--NPLRALYLIATNGTP--E------LQNPEK  241 (297)
T ss_dssp             CBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTS--CHHHHHHHHHHHCSC--C------CSCGGG
T ss_pred             ccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHhCCCC--C------CCCccc
Confidence                  233456788777778899999999999999999999999432  222222222211110  0      011233


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ....+.+++.+||+.||++||++.|+++
T Consensus       242 ~~~~~~~li~~~l~~dp~~Rps~~ell~  269 (297)
T 3fxz_A          242 LSAIFRDFLNRCLEMDVEKRGSAKELLQ  269 (297)
T ss_dssp             SCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             cCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence            4467889999999999999999999876

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=3.9e-38  Score=325.14  Aligned_cols=251  Identities=17%  Similarity=0.312  Sum_probs=200.9

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. ++..||+|.+.......  ....+.|.+|++++++++||||+++++++.+.+  ..++||
T Consensus        15 i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~--~~~lv~   90 (294)
T 4eqm_A           15 IVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREK--EETLKRFEREVHNSSQLSHQNIVSMIDVDEEDD--CYYLVM   90 (294)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCC--HHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSS--EEEEEE
T ss_pred             EEEEEccCCCEEEEEEEECCCCCeEEEEEeccCcccc--HHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCC--eEEEEE
Confidence            4578999999999999964 68899999986544332  445678999999999999999999999998776  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++|+|.+++...  ..+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....  
T Consensus        91 e~~~g~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  166 (294)
T 4eqm_A           91 EYIEGPTLSEYIESH--GPLSVDTAINFTNQILDGIKHAHDMR--IVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSL  166 (294)
T ss_dssp             ECCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECTTSCEEECCCSSSTTC-----
T ss_pred             eCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEECCCCCEEEEeCCCccccccccc
Confidence            999999999998643  46999999999999999999999998  999999999999999999999999998765321  


Q ss_pred             --------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          531 --------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       531 --------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                              ...+.+||......++.++||||||+++|||+||+.||..  ....+..........  ....    .....
T Consensus       167 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~--~~~~~~~~~~~~~~~--~~~~----~~~~~  238 (294)
T 4eqm_A          167 TQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNG--ETAVSIAIKHIQDSV--PNVT----TDVRK  238 (294)
T ss_dssp             --------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCS--SCHHHHHHHHHSSCC--CCHH----HHSCT
T ss_pred             cccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCC--CChHHHHHHHhhccC--CCcc----hhccc
Confidence                    2345577877777789999999999999999999999943  223333333332211  1100    01122


Q ss_pred             HHHHHHHHHHHHhccCCCCCCC-CHHHHHHHHHhhhCCC
Q 006019          603 EQLETLGELIKSCVRADPEKRP-TMRDIAAILREITGIT  640 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RP-s~~ev~~~L~~i~~~~  640 (664)
                      ..+..+.+++.+||+.||++|| +++++.+.|+.+....
T Consensus       239 ~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~~~  277 (294)
T 4eqm_A          239 DIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLHEN  277 (294)
T ss_dssp             TSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSSSS
T ss_pred             CCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHhhc
Confidence            2345688999999999999998 9999999999987653

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=6.8e-39  Score=363.27  Aligned_cols=240  Identities=20%  Similarity=0.290  Sum_probs=195.9

Q ss_pred             ccccCCCeEEEEEEEC---CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          377 VIGSSPIGTVYKGTLS---NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       377 ~iG~G~~G~Vy~g~~~---~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .||+|+||.||+|.+.   ++..||||+++....    ....++|.+|+++|++++|||||+++++|.. +  ..++|||
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~----~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~--~~~lv~E  415 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTE----KADTEEMMREAQIMHQLDNPYIVRLIGVCQA-E--ALMLVME  415 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCS----STTHHHHHHHHHHHTTCCCTTBCCEEEEEES-S--SEEEEEE
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCC----hHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-C--CeEEEEE
Confidence            7999999999999874   466799999865432    2245789999999999999999999999976 3  4699999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhhh--
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE--  531 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~~--  531 (664)
                      ||++|+|.+++.. ....+++..+..|+.+|+.||+|||+.+  |+||||||+|||+++++.+||+|||+++......  
T Consensus       416 ~~~~g~L~~~l~~-~~~~l~~~~~~~i~~qi~~~L~~LH~~~--iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~  492 (613)
T 2ozo_A          416 MAGGGPLHKFLVG-KREEIPVSNVAELLHQVSMGMKYLEEKN--FVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSY  492 (613)
T ss_dssp             CCTTCBHHHHHTT-CTTTSCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEEEETTEEEECCCSTTTTCC-----
T ss_pred             eCCCCcHHHHHhh-ccCCCCHHHHHHHHHHHHHHHHHHHHCC--EEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCce
Confidence            9999999999963 3557999999999999999999999998  9999999999999999999999999998653211  


Q ss_pred             ----------hhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 006019          532 ----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  600 (664)
Q Consensus       532 ----------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  600 (664)
                                ..+.+||......++.++|||||||++|||+| |+.||...  ...+....+..+.          ....
T Consensus       493 ~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~--~~~~~~~~i~~~~----------~~~~  560 (613)
T 2ozo_A          493 YTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM--KGPEVMAFIEQGK----------RMEC  560 (613)
T ss_dssp             ---------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC--CSHHHHHHHHTTC----------CCCC
T ss_pred             eeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC--CHHHHHHHHHcCC----------CCCC
Confidence                      23567887777788999999999999999998 99999532  2233333322221          1122


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          601 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       601 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      +..++.++.+++.+||+.||++||+|.+|++.|+.+..
T Consensus       561 p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~  598 (613)
T 2ozo_A          561 PPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYY  598 (613)
T ss_dssp             CTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHH
Confidence            33445679999999999999999999999999999854

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.3e-38  Score=334.26  Aligned_cols=254  Identities=20%  Similarity=0.304  Sum_probs=194.5

Q ss_pred             hhhcccccCCCeEEEEEEE------CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCC
Q 006019          373 DFSNVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEP  445 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~------~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~  445 (664)
                      .+.+.||+|+||.||+|+.      .++..||||.+.....    ....+.+.+|+++++++ +||||+++++++...+ 
T Consensus        48 ~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~----~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~-  122 (344)
T 1rjb_A           48 EFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKAD----SSEREALMSELKMMTQLGSHENIVNLLGACTLSG-  122 (344)
T ss_dssp             EEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-
T ss_pred             eeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccC----HHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCC-
Confidence            4458999999999999996      2456899999864322    12346799999999999 8999999999998876 


Q ss_pred             ceeEEEEEecCCCChhhhhcccCC---------------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcC
Q 006019          446 FTRMMVFEYAPNGTLFEHIHIKES---------------------EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLN  504 (664)
Q Consensus       446 ~~~~lV~Ey~~~GsL~~~l~~~~~---------------------~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk  504 (664)
                       ..++||||+++|+|.+++.....                     ..+++..+..++.+++.||+|||+.+  |+|||||
T Consensus       123 -~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dik  199 (344)
T 1rjb_A          123 -PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKS--CVHRDLA  199 (344)
T ss_dssp             -SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTT--EEETTCS
T ss_pred             -ccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCC
Confidence             56999999999999999974322                     34899999999999999999999998  9999999


Q ss_pred             CCCeEecCCCceEecccCchhhhhhhh-----------hhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCC
Q 006019          505 SSAVHLTEDYAAKLSDLSFWNEIAMAE-----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDN  572 (664)
Q Consensus       505 ~~NILld~~~~~kl~DfGla~~~~~~~-----------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~  572 (664)
                      |+|||++.++.+||+|||+++......           ..+.+||......++.++|||||||++|||+| |+.||....
T Consensus       200 p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~  279 (344)
T 1rjb_A          200 ARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIP  279 (344)
T ss_dssp             GGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred             hhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCC
Confidence            999999999999999999997653221           23667887766778999999999999999999 999995432


Q ss_pred             CChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCCCCCC
Q 006019          573 GSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAI  645 (664)
Q Consensus       573 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~~~~~  645 (664)
                      ..  +.....+.....         ...+...+..+.+++.+||+.||++||++.++++.|+.+....++...
T Consensus       280 ~~--~~~~~~~~~~~~---------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~~~~~  341 (344)
T 1rjb_A          280 VD--ANFYKLIQNGFK---------MDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLADAEEAMY  341 (344)
T ss_dssp             CS--HHHHHHHHTTCC---------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--------
T ss_pred             cH--HHHHHHHhcCCC---------CCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHHHHHHh
Confidence            22  222222222111         011222345789999999999999999999999999999887665543

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=3.1e-38  Score=326.57  Aligned_cols=243  Identities=22%  Similarity=0.349  Sum_probs=187.3

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhc--cCCCcccceEEEEecCC--CceeE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSK--VNHKNFVNLIGFCEEEE--PFTRM  449 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~--l~H~niv~l~g~~~~~~--~~~~~  449 (664)
                      +.+.||+|+||.||+|+. ++..||||++...        ....+..|.+++..  ++||||+++++++....  ....+
T Consensus        12 ~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~--------~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~   82 (301)
T 3q4u_A           12 LLECVGKGRYGEVWRGSW-QGENVAVKIFSSR--------DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLW   82 (301)
T ss_dssp             EEEEEEECSSEEEEEEEE-TTEEEEEEEECGG--------GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEE
T ss_pred             EEEeeccCCCcEEEEEEE-CCEEEEEEEeccc--------cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeE
Confidence            448899999999999998 6889999998532        23456677777766  79999999999976432  22578


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhh--------cCCCCeEEeCcCCCCeEecCCCceEeccc
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMH--------QLNPPIAHNYLNSSAVHLTEDYAAKLSDL  521 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH--------~~~~~ivHrDLk~~NILld~~~~~kl~Df  521 (664)
                      +||||+++|+|.++++   ...+++..+.+|+.+++.||+|||        +.+  |+||||||+|||++.++.+||+||
T Consensus        83 lv~e~~~~g~L~~~l~---~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~--ivH~Dlkp~Nill~~~~~~kl~Df  157 (301)
T 3q4u_A           83 LITHYHEMGSLYDYLQ---LTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPA--IAHRDLKSKNILVKKNGQCCIADL  157 (301)
T ss_dssp             EEECCCTTCBHHHHHT---TCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCE--EECSCCCGGGEEECTTSCEEECCC
T ss_pred             EehhhccCCCHHHHHh---hcccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCC--eecCCCChHhEEEcCCCCEEEeeC
Confidence            9999999999999995   346999999999999999999999        767  999999999999999999999999


Q ss_pred             Cchhhhhh-------------hhhhcccccccCCC------CCCcCCcchhhHHHHHHHHhC----------CCCccCCC
Q 006019          522 SFWNEIAM-------------AEMAATSKKLSSAP------SASLESNVYNFGVLLFEMVTG----------RLPYLVDN  572 (664)
Q Consensus       522 Gla~~~~~-------------~~~~~~~pe~~~~~------~~s~ksDVySfGvvl~El~tG----------~~P~~~~~  572 (664)
                      |+++....             ....+.+||.....      .++.++|||||||++|||+||          +.||....
T Consensus       158 g~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~  237 (301)
T 3q4u_A          158 GLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVV  237 (301)
T ss_dssp             TTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTS
T ss_pred             CCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccC
Confidence            99865422             22345677766554      345789999999999999999          78874321


Q ss_pred             ---CChHHHHHHHhcCCCCCccccCCCCC--CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 006019          573 ---GSLEDWAADYLSGVQPLQQFVDPTLS--SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  636 (664)
Q Consensus       573 ---~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i  636 (664)
                         ............. .     ..+...  ..+...+..+.+++.+||+.||++|||+.+|++.|+++
T Consensus       238 ~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i  300 (301)
T 3q4u_A          238 PNDPSFEDMRKVVCVD-Q-----QRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI  300 (301)
T ss_dssp             CSSCCHHHHHHHHTTS-C-----CCCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred             CCCcchhhhhHHHhcc-C-----CCCCCChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence               1222222211111 1     111111  12345678899999999999999999999999999986

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=8.3e-39  Score=334.61  Aligned_cols=252  Identities=19%  Similarity=0.316  Sum_probs=188.7

Q ss_pred             hhhcccccCCCeEEEEEEECCC----cEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCc--
Q 006019          373 DFSNVIGSSPIGTVYKGTLSNG----VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF--  446 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~~~----~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~--  446 (664)
                      .+.+.||+|+||.||+|+....    ..||||.+......   ....++|.+|++++++++||||+++++++...+..  
T Consensus        26 ~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~  102 (323)
T 3qup_A           26 TLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIA---SSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAKGR  102 (323)
T ss_dssp             EEEEEEEEETTEEEEEEEC-------CEEEEEEC---------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC-----
T ss_pred             EEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccC---HHHHHHHHHHHHHHHHCCCCceehhhceeeccccccC
Confidence            3458999999999999996543    27999988654322   23457899999999999999999999999765521  


Q ss_pred             --eeEEEEEecCCCChhhhhccc----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecc
Q 006019          447 --TRMMVFEYAPNGTLFEHIHIK----ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD  520 (664)
Q Consensus       447 --~~~lV~Ey~~~GsL~~~l~~~----~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~D  520 (664)
                        ..++||||+++|+|.+++...    ....+++..+.+|+.+++.||+|||+.+  |+||||||+|||+++++.+||+|
T Consensus       103 ~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~--ivH~Dikp~NIli~~~~~~kl~D  180 (323)
T 3qup_A          103 LPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRN--FIHRDLAARNCMLAEDMTVCVAD  180 (323)
T ss_dssp             --CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEECTTSCEEECC
T ss_pred             CCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCC--cccCCCCcceEEEcCCCCEEEee
Confidence              138999999999999998533    2235899999999999999999999998  99999999999999999999999


Q ss_pred             cCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCC
Q 006019          521 LSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQP  588 (664)
Q Consensus       521 fGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~  588 (664)
                      ||+++.....           ...+.+||......++.++|||||||++|||+| |+.||....  ..+.........  
T Consensus       181 fg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~--~~~~~~~~~~~~--  256 (323)
T 3qup_A          181 FGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIE--NAEIYNYLIGGN--  256 (323)
T ss_dssp             CCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--GGGHHHHHHTTC--
T ss_pred             ccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccC--hHHHHHHHhcCC--
Confidence            9999765322           123556777666778999999999999999999 999994322  222222222221  


Q ss_pred             CccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCC
Q 006019          589 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP  641 (664)
Q Consensus       589 ~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~  641 (664)
                              ....+...+..+.+++.+||+.||++||++.++++.|++++....
T Consensus       257 --------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~~  301 (323)
T 3qup_A          257 --------RLKQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGHLS  301 (323)
T ss_dssp             --------CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC--
T ss_pred             --------CCCCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHhh
Confidence                    111122334578999999999999999999999999999986533

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=3.7e-39  Score=331.38  Aligned_cols=251  Identities=22%  Similarity=0.343  Sum_probs=202.2

Q ss_pred             HHHHHHhhhhcccccCCCeEEEEEEECC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCC
Q 006019          366 ELEAACEDFSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE  444 (664)
Q Consensus       366 el~~~~~~~~~~iG~G~~G~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~  444 (664)
                      ++......+.+.||+|+||.||+|+... +..||+|.+....      ...+.|.+|++++++++||||+++++++.+.+
T Consensus         9 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~------~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   82 (288)
T 3kfa_A            9 EMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT------MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP   82 (288)
T ss_dssp             BCCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS------THHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             cccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH------HHHHHHHHHHHHHHhCCCCCEeeEEEEEccCC
Confidence            3333334455899999999999999764 7889999985322      23567999999999999999999999998776


Q ss_pred             CceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCch
Q 006019          445 PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW  524 (664)
Q Consensus       445 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla  524 (664)
                        ..++||||+++|+|.+++.......+++..+..++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||++
T Consensus        83 --~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~--i~H~dikp~Nil~~~~~~~~l~Dfg~~  158 (288)
T 3kfa_A           83 --PFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLS  158 (288)
T ss_dssp             --SEEEEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHHT--CCCSCCSGGGEEECGGGCEEECCCCGG
T ss_pred             --CEEEEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHCC--ccCCCCCcceEEEcCCCCEEEccCccc
Confidence              6799999999999999997666677999999999999999999999998  999999999999999999999999998


Q ss_pred             hhhhhh----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCcccc
Q 006019          525 NEIAMA----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFV  593 (664)
Q Consensus       525 ~~~~~~----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (664)
                      +.....          ...+.+||......++.++||||||+++|||+| |+.||....  ..+......... .     
T Consensus       159 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~--~~~~~~~~~~~~-~-----  230 (288)
T 3kfa_A          159 RLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLEKDY-R-----  230 (288)
T ss_dssp             GTSCSSSSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC--GGGHHHHHHTTC-C-----
T ss_pred             eeccCCccccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHhccC-C-----
Confidence            765321          123567787766778999999999999999999 999985322  222222221110 0     


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          594 DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       594 d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                          ...+...+..+.+++.+||+.||++||++.++++.|+.+..
T Consensus       231 ----~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~  271 (288)
T 3kfa_A          231 ----MERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQ  271 (288)
T ss_dssp             ----CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             ----CCCCCCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHH
Confidence                11122334578999999999999999999999999998865

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=1.2e-38  Score=326.64  Aligned_cols=244  Identities=19%  Similarity=0.318  Sum_probs=187.7

Q ss_pred             hhhcccccCCCeEEEEEEECC----CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          373 DFSNVIGSSPIGTVYKGTLSN----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~~----~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      .+.+.||+|+||.||+|+...    +..||+|.+....    .....+.|.+|+.++++++||||+++++++.+.   ..
T Consensus        18 ~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~---~~   90 (281)
T 1mp8_A           18 ELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCT----SDSVREKFLQEALTMRQFDHPHIVKLIGVITEN---PV   90 (281)
T ss_dssp             EEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTT----SHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS---SC
T ss_pred             EEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccC----CHHHHHHHHHHHHHHHhCCCCccceEEEEEccC---cc
Confidence            355889999999999999743    4568888775321    234567899999999999999999999998543   45


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++||||+++|+|.+++... ...+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...
T Consensus        91 ~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  167 (281)
T 1mp8_A           91 WIIMELCTLGELRSFLQVR-KYSLDLASLILYAYQLSTALAYLESKR--FVHRDIAARNVLVSSNDCVKLGDFGLSRYME  167 (281)
T ss_dssp             EEEEECCTTEEHHHHHHHT-TTTSCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEEEETTEEEECC--------
T ss_pred             EEEEecCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhCC--eecccccHHHEEECCCCCEEECccccccccC
Confidence            8999999999999998643 456999999999999999999999998  9999999999999999999999999987653


Q ss_pred             hhh----------hhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 006019          529 MAE----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  597 (664)
Q Consensus       529 ~~~----------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  597 (664)
                      ...          ..+.+||......++.++||||||+++|||+| |+.||....  ..+.........          .
T Consensus       168 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~--~~~~~~~i~~~~----------~  235 (281)
T 1mp8_A          168 DSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVK--NNDVIGRIENGE----------R  235 (281)
T ss_dssp             -----------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCC--GGGHHHHHHTTC----------C
T ss_pred             cccccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCC--HHHHHHHHHcCC----------C
Confidence            221          24567777766778999999999999999997 999995322  222222222211          1


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          598 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       598 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      ...+...+..+.+++.+||+.||++||++.++++.|+++.+
T Consensus       236 ~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~  276 (281)
T 1mp8_A          236 LPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILE  276 (281)
T ss_dssp             CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence            11223344678899999999999999999999999999864

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=1.7e-38  Score=327.02  Aligned_cols=249  Identities=24%  Similarity=0.446  Sum_probs=188.9

Q ss_pred             hhhhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          372 EDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      ..+.+.||+|+||.||+|+..+  .+|+|++.....   .....+.|.+|++++++++||||+++++++...   ..++|
T Consensus        26 y~~~~~lG~G~~g~Vy~~~~~~--~vavK~~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---~~~lv   97 (289)
T 3og7_A           26 ITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAP---TPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAP---QLAIV   97 (289)
T ss_dssp             CEEEEEEEECSSEEEEEEESSS--EEEEEEESCSSC---CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS---SCEEE
T ss_pred             eeeeeEecCCCCeEEEEEEEcC--ceEEEEEeccCC---CHHHHHHHHHHHHHHHhCCCCcEEEEEeeccCC---ccEEE
Confidence            3455889999999999998643  599998865432   234557899999999999999999999987543   45899


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh--
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM--  529 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~--  529 (664)
                      |||+++|+|.++++. ....+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....  
T Consensus        98 ~e~~~~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~~L~~lH~~~--i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  174 (289)
T 3og7_A           98 TQWCEGSSLYHHLHA-SETKFEMKKLIDIARQTARGMDYLHAKS--IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWS  174 (289)
T ss_dssp             EECCCEEEHHHHHTT-C---CCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEETTTEEEECCCC---------
T ss_pred             EEecCCCcHHHHHhh-ccCCCCHHHHHHHHHHHHHHHHHHHhCC--cccccCccceEEECCCCCEEEccceecccccccc
Confidence            999999999999863 3456999999999999999999999998  99999999999999999999999999875532  


Q ss_pred             ---------hhhhcccccccC---CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 006019          530 ---------AEMAATSKKLSS---APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  597 (664)
Q Consensus       530 ---------~~~~~~~pe~~~---~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  597 (664)
                               ....+.+||...   ...++.++||||||+++|||+||+.||.... ............ .     ..+..
T Consensus       175 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~-~~~~~~~~~~~~-~-----~~~~~  247 (289)
T 3og7_A          175 GSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNIN-NRDQIIEMVGRG-S-----LSPDL  247 (289)
T ss_dssp             ---------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCC-CHHHHHHHHHHT-S-----CCCCT
T ss_pred             ccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccc-hHHHHHHHhccc-c-----cCcch
Confidence                     122345677654   5567889999999999999999999995322 222222222221 1     11122


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          598 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       598 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      ......++..+.+++.+||+.||++||++.++++.|+++.+
T Consensus       248 ~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~~  288 (289)
T 3og7_A          248 SKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELAR  288 (289)
T ss_dssp             TSSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred             hhccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence            22233445679999999999999999999999999999864

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=4.2e-38  Score=319.69  Aligned_cols=242  Identities=22%  Similarity=0.348  Sum_probs=198.3

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.+.||+|+||.||+|+..++..||+|.+.....      ..+++.+|++++++++||||+++++++.+.+  ..++|||
T Consensus        12 ~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~------~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~e   83 (267)
T 3t9t_A           12 FVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM------SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQA--PICLVTE   83 (267)
T ss_dssp             EEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB------CHHHHHHHHHHHHTCCCTTBCCEEEEECSSS--SCEEEEC
T ss_pred             eeeEecCCCceeEEEEEecCCCeEEEEEccccCC------CHHHHHHHHHHHHhCCCCCEeeEEEEEccCC--CeEEEEe
Confidence            4578999999999999998889999999864332      2367999999999999999999999998876  5699999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      |+++|+|.+++.. ....+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++.....   
T Consensus        84 ~~~~~~L~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~  160 (267)
T 3t9t_A           84 FMEHGCLSDYLRT-QRGLFAAETLLGMCLDVCEGMAYLEEAC--VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYT  160 (267)
T ss_dssp             CCTTCBHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHHH
T ss_pred             CCCCCcHHHHHhh-CcccCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCchheEEECCCCCEEEccccccccccccccc
Confidence            9999999999864 3456899999999999999999999998  999999999999999999999999998765321   


Q ss_pred             -------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          531 -------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       531 -------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                             ...+.+||......++.++||||||+++|||+| |+.||..  ....+.......+...          ..+.
T Consensus       161 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~--~~~~~~~~~i~~~~~~----------~~~~  228 (267)
T 3t9t_A          161 SSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYEN--RSNSEVVEDISTGFRL----------YKPR  228 (267)
T ss_dssp             STTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTT--CCHHHHHHHHHTTCCC----------CCCT
T ss_pred             ccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCC--CCHHHHHHHHhcCCcC----------CCCc
Confidence                   123566777666678899999999999999999 8999843  3333433333322110          0111


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          603 EQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      ..+..+.+++.+||+.||++||++.++++.|+++.+
T Consensus       229 ~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~  264 (267)
T 3t9t_A          229 LASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAE  264 (267)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            223568899999999999999999999999999875

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=4.1e-38  Score=357.79  Aligned_cols=240  Identities=22%  Similarity=0.302  Sum_probs=195.7

Q ss_pred             cccccCCCeEEEEEEEC---CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          376 NVIGSSPIGTVYKGTLS---NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~---~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.||+|+||.||+|.+.   .+..||||+++.....   ....++|.+|+++|++++|||||+++++|...   ..++||
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~---~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~---~~~lv~  448 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEAND---PALKDELLAEANVMQQLDNPYIVRMIGICEAE---SWMLVM  448 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGC---GGGHHHHHHHHHHHHHCCCTTBCCEEEEEESS---SEEEEE
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCC---HHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC---CEEEEE
Confidence            47999999999999763   4678999998654322   23457899999999999999999999999653   468999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      |||++|+|.++++.  ...+++..+..|+.+|+.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....  
T Consensus       449 E~~~~g~L~~~l~~--~~~l~~~~~~~i~~qi~~~L~yLH~~~--iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~  524 (635)
T 4fl3_A          449 EMAELGPLNKYLQQ--NRHVKDKNIIELVHQVSMGMKYLEESN--FVHRDLAARNVLLVTQHYAKISDFGLSKALRADEN  524 (635)
T ss_dssp             ECCTTEEHHHHHHH--CTTCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEEEETTEEEECCTTHHHHTTC---
T ss_pred             EccCCCCHHHHHhh--CCCCCHHHHHHHHHHHHHHHHHHHHCC--EeCCCCChHhEEEeCCCCEEEEEcCCccccccCcc
Confidence            99999999999963  456999999999999999999999998  999999999999999999999999999866321  


Q ss_pred             ----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 006019          531 ----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  599 (664)
Q Consensus       531 ----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  599 (664)
                                ...+.+||......++.++|||||||++|||+| |+.||..  ....+.......+.          ...
T Consensus       525 ~~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~--~~~~~~~~~i~~~~----------~~~  592 (635)
T 4fl3_A          525 YYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRG--MKGSEVTAMLEKGE----------RMG  592 (635)
T ss_dssp             ----------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTT--CCHHHHHHHHHTTC----------CCC
T ss_pred             ccccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHcCC----------CCC
Confidence                      123567887777788999999999999999999 9999943  23333333322221          111


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhh
Q 006019          600 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  637 (664)
Q Consensus       600 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~  637 (664)
                      .+..++.++.+++.+||+.||++||++.+|++.|+++.
T Consensus       593 ~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~  630 (635)
T 4fl3_A          593 CPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYY  630 (635)
T ss_dssp             CCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence            23334567999999999999999999999999999875

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=4.9e-39  Score=342.31  Aligned_cols=258  Identities=13%  Similarity=0.152  Sum_probs=192.2

Q ss_pred             hhcccccCCCeEEEEEEECC------CcEEEEEEeeecccCCCc------hhHHHHHHHHHHHHhccCCCcccceEEEEe
Q 006019          374 FSNVIGSSPIGTVYKGTLSN------GVEIAVASVSVASAKDWP------KNLEVQFRKKIDTLSKVNHKNFVNLIGFCE  441 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~------~~~vavk~~~~~~~~~~~------~~~~~~f~~E~~~l~~l~H~niv~l~g~~~  441 (664)
                      +.+.||+|+||.||+|.+..      ++.||||++.........      ......+..|+..++.++||||+++++++.
T Consensus        39 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~  118 (364)
T 3op5_A           39 VGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGL  118 (364)
T ss_dssp             EEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCEEEEEE
T ss_pred             EEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeEEeeee
Confidence            45889999999999999765      478999988643210000      000123455666778889999999999987


Q ss_pred             cCCC--ceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEec--CCCceE
Q 006019          442 EEEP--FTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT--EDYAAK  517 (664)
Q Consensus       442 ~~~~--~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld--~~~~~k  517 (664)
                      ....  ...++||||+ +|+|.+++.. ....+++..+..|+.+++.||+|||+.+  |+||||||+|||++  .++.+|
T Consensus       119 ~~~~~~~~~~lv~e~~-g~~L~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~--iiHrDlkp~Nill~~~~~~~~k  194 (364)
T 3op5_A          119 HDKNGKSYRFMIMDRF-GSDLQKIYEA-NAKRFSRKTVLQLSLRILDILEYIHEHE--YVHGDIKASNLLLNYKNPDQVY  194 (364)
T ss_dssp             EEETTEEEEEEEEECE-EEEHHHHHHH-TTSCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEEESSCTTCEE
T ss_pred             eccCCcceEEEEEeCC-CCCHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHCC--eEEecCCHHHEEEecCCCCeEE
Confidence            6421  2479999999 9999999864 3467999999999999999999999998  99999999999999  889999


Q ss_pred             ecccCchhhhhh----------------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHH--HH
Q 006019          518 LSDLSFWNEIAM----------------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLED--WA  579 (664)
Q Consensus       518 l~DfGla~~~~~----------------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~--~~  579 (664)
                      |+|||+++....                ....+.+||......++.++|||||||++|||+||+.||.........  +.
T Consensus       195 l~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~~~~~~~~  274 (364)
T 3op5_A          195 LVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDS  274 (364)
T ss_dssp             ECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHH
T ss_pred             EEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccCHHHHHHH
Confidence            999999976532                223456788777778899999999999999999999999643222211  11


Q ss_pred             HHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          580 ADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       580 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                      .....  ..+..+.++.+.  ....+.++.+++..||+.+|++||++.+|++.|+++...
T Consensus       275 ~~~~~--~~~~~~~~~~~~--~~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~~  330 (364)
T 3op5_A          275 KIRYR--ENIASLMDKCFP--AANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKA  330 (364)
T ss_dssp             HHHHH--HCHHHHHHHHSC--TTCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             HHHhh--hhHHHHHHHhcc--cccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Confidence            11111  112222222211  012235689999999999999999999999999998753

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=1.8e-38  Score=337.09  Aligned_cols=248  Identities=19%  Similarity=0.300  Sum_probs=195.8

Q ss_pred             hhcccccCCCeEEEEEEE------CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCc
Q 006019          374 FSNVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPF  446 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~------~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~  446 (664)
                      +.+.||+|+||.||+|++      .+++.||||++....    .....+.|.+|+++++++ +|||||+++++|.+.+. 
T Consensus        26 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~~hpniv~~~~~~~~~~~-  100 (359)
T 3vhe_A           26 LGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA----THSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG-  100 (359)
T ss_dssp             EEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTS-
T ss_pred             eceeecCCCCceEEEEEeccccccccceEEEEEEecCcC----CHHHHHHHHHHHHHHHhhcCCcceeeeeeeeecCCC-
Confidence            448999999999999984      245789999986332    233456799999999999 79999999999987553 


Q ss_pred             eeEEEEEecCCCChhhhhcccCC---------------------------------------------------------
Q 006019          447 TRMMVFEYAPNGTLFEHIHIKES---------------------------------------------------------  469 (664)
Q Consensus       447 ~~~lV~Ey~~~GsL~~~l~~~~~---------------------------------------------------------  469 (664)
                      ..++||||+++|+|.++++....                                                         
T Consensus       101 ~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (359)
T 3vhe_A          101 PLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEE  180 (359)
T ss_dssp             CCEEEEECCTTEEHHHHHHTTTTSBCSCC---------------------------------------------------
T ss_pred             ceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccchhhhcc
Confidence            36899999999999999874321                                                         


Q ss_pred             -------CCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh-----------h
Q 006019          470 -------EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-----------E  531 (664)
Q Consensus       470 -------~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~-----------~  531 (664)
                             ..+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....           .
T Consensus       181 ~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~--ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t  258 (359)
T 3vhe_A          181 APEDLYKDFLTLEHLICYSFQVAKGMEFLASRK--CIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLP  258 (359)
T ss_dssp             ---CTTTTCBCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCEEC--CEEC
T ss_pred             cccchhccccCHHHHHHHHHHHHHHHHHHHHCC--cccCCCChhhEEEcCCCcEEEEeccceeeecccccchhccccCCC
Confidence                   12899999999999999999999998  999999999999999999999999999755221           1


Q ss_pred             hhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHH
Q 006019          532 MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGE  610 (664)
Q Consensus       532 ~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~  610 (664)
                      ..+.+||......++.++|||||||++|||+| |+.||......  +.....+.....         ...+.....++.+
T Consensus       259 ~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~~~~~~~~~~~---------~~~~~~~~~~l~~  327 (359)
T 3vhe_A          259 LKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID--EEFCRRLKEGTR---------MRAPDYTTPEMYQ  327 (359)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCS--HHHHHHHHHTCC---------CCCCTTCCHHHHH
T ss_pred             ceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchh--HHHHHHHHcCCC---------CCCCCCCCHHHHH
Confidence            23567887777778999999999999999999 99999543322  112122211111         0112223356889


Q ss_pred             HHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          611 LIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       611 l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                      ++.+||+.||++||++.|+++.|+++.+.
T Consensus       328 li~~~l~~dP~~Rps~~ell~~L~~~~~~  356 (359)
T 3vhe_A          328 TMLDCWHGEPSQRPTFSELVEHLGNLLQA  356 (359)
T ss_dssp             HHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHccCChhhCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999998753

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.7e-37  Score=324.13  Aligned_cols=259  Identities=18%  Similarity=0.253  Sum_probs=201.5

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. +++.||||++......    ...+.+.+|++++++++||||+++++++........++||
T Consensus        13 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   88 (319)
T 4euu_A           13 LSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFL----RPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM   88 (319)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGG----SCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred             EEEEecCCCCeEEEEEEECCCCcEEEEEEecccccc----chHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEE
Confidence            4578999999999999976 4899999998643322    2246788999999999999999999999876544679999


Q ss_pred             EecCCCChhhhhcccC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEe----cCCCceEecccCchhhh
Q 006019          453 EYAPNGTLFEHIHIKE-SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL----TEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~-~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILl----d~~~~~kl~DfGla~~~  527 (664)
                      ||+++|+|.+++.... ...+++..+..|+.+++.||+|||+.+  |+||||||+|||+    +.++.+||+|||+++..
T Consensus        89 e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~--ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~  166 (319)
T 4euu_A           89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENG--IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAREL  166 (319)
T ss_dssp             ECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEEECTTSCEEEEECCCTTCEEC
T ss_pred             eCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCC--EecCCCCHHHEEEeccCCCCceEEEccCCCceec
Confidence            9999999999997532 234999999999999999999999998  9999999999999    88889999999999765


Q ss_pred             hhh--------hhhcccccccC--------CCCCCcCCcchhhHHHHHHHHhCCCCccCCC--CChHHHHHHHhcCCC--
Q 006019          528 AMA--------EMAATSKKLSS--------APSASLESNVYNFGVLLFEMVTGRLPYLVDN--GSLEDWAADYLSGVQ--  587 (664)
Q Consensus       528 ~~~--------~~~~~~pe~~~--------~~~~s~ksDVySfGvvl~El~tG~~P~~~~~--~~~~~~~~~~~~~~~--  587 (664)
                      ...        ...+.+||...        ...++.++|||||||++|||+||+.||....  ....+.......+..  
T Consensus       167 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~p~~  246 (319)
T 4euu_A          167 EDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSG  246 (319)
T ss_dssp             CTTCCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHHCCTT
T ss_pred             CCCCceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcCCCcc
Confidence            322        23455677543        4678899999999999999999999996322  222333333332211  


Q ss_pred             CCccc---c------C---CCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          588 PLQQF---V------D---PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       588 ~~~~~---~------d---~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      ....+   .      .   +............+.+++.+||+.||++||+++|+++...+...
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~~~  309 (319)
T 4euu_A          247 AISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILH  309 (319)
T ss_dssp             CCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHTC
T ss_pred             cchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHHhh
Confidence            00000   0      0   11123456778889999999999999999999999999887654

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=4.1e-38  Score=327.71  Aligned_cols=256  Identities=20%  Similarity=0.274  Sum_probs=196.6

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCc--eeEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF--TRMM  450 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~--~~~l  450 (664)
                      +.+.||+|+||.||+|+. .+++.||||++.......  ......|.+|++++++++||||+++++++......  ..++
T Consensus        16 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~l   93 (311)
T 3ork_A           16 LGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARD--PSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYI   93 (311)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTS--HHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEEEEE
T ss_pred             EEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCC--HHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcccEE
Confidence            458899999999999996 578999999987543322  34456799999999999999999999998764421  3489


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  530 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~  530 (664)
                      ||||+++|+|.++++..  ..+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....
T Consensus        94 v~e~~~g~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~  169 (311)
T 3ork_A           94 VMEYVDGVTLRDIVHTE--GPMTPKRAIEVIADACQALNFSHQNG--IIHRDVKPANIMISATNAVKVMDFGIARAIADS  169 (311)
T ss_dssp             EEECCCEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEEETTSCEEECCCSCC------
T ss_pred             EEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCC--CCcCCCCHHHEEEcCCCCEEEeeccCccccccc
Confidence            99999999999998643  46899999999999999999999998  999999999999999999999999998765321


Q ss_pred             ------------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 006019          531 ------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       531 ------------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                                  ...+.+||......++.++|||||||++|||+||+.||..  ....+................     
T Consensus       170 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~--~~~~~~~~~~~~~~~~~~~~~-----  242 (311)
T 3ork_A          170 GNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTG--DSPVSVAYQHVREDPIPPSAR-----  242 (311)
T ss_dssp             ------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCC--SSHHHHHHHHHHCCCCCHHHH-----
T ss_pred             ccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCC--CChHHHHHHHhcCCCCCcccc-----
Confidence                        2345678877777889999999999999999999999943  333333333333211111111     


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCC-HHHHHHHHHhhhCCCCCCC
Q 006019          599 SFDEEQLETLGELIKSCVRADPEKRPT-MRDIAAILREITGITPDGA  644 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs-~~ev~~~L~~i~~~~~~~~  644 (664)
                        ....+.++.+++.+||+.||++||+ ++++...|..+....++..
T Consensus       243 --~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~~~~~~~  287 (311)
T 3ork_A          243 --HEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHNGEPPEA  287 (311)
T ss_dssp             --STTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHTTCCCSS
T ss_pred             --cCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHHhcCCCCCC
Confidence              1112356889999999999999995 5556677777766555443

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=1.6e-38  Score=325.20  Aligned_cols=247  Identities=22%  Similarity=0.368  Sum_probs=197.4

Q ss_pred             hhhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      .+.+.||+|+||.||+|+..++..||+|.+.....      ..+.|.+|++++++++||||+++++++.+.   ..++||
T Consensus        16 ~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~------~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~---~~~~v~   86 (279)
T 1qpc_A           16 KLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM------SPDAFLAEANLMKQLQHQRLVRLYAVVTQE---PIYIIT   86 (279)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS------CHHHHHHHHHHHHHCCCTTBCCEEEEECSS---SCEEEE
T ss_pred             hheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcc------cHHHHHHHHHHHHhCCCcCcceEEEEEcCC---CcEEEE
Confidence            34588999999999999998888999998864321      246799999999999999999999998753   458999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++|+|.+++.......+++..+..++.+++.||+|||+.+  ++||||||+||++++++.+||+|||+++.....  
T Consensus        87 e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  164 (279)
T 1qpc_A           87 EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERN--YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEY  164 (279)
T ss_dssp             ECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECTTSCEEECCCTTCEECSSSCE
T ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCCHhhEEEcCCCCEEECCCcccccccCccc
Confidence            9999999999986443346999999999999999999999998  999999999999999999999999998765321  


Q ss_pred             --------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 006019          531 --------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  601 (664)
Q Consensus       531 --------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  601 (664)
                              ...+.+||......++.++||||||+++|||+| |+.||..  ....+..........          ...+
T Consensus       165 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~--~~~~~~~~~~~~~~~----------~~~~  232 (279)
T 1qpc_A          165 TAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG--MTNPEVIQNLERGYR----------MVRP  232 (279)
T ss_dssp             ECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTT--CCHHHHHHHHHTTCC----------CCCC
T ss_pred             ccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcc--cCHHHHHHHHhcccC----------CCCc
Confidence                    123556776655667889999999999999999 9999843  233333333322211          0112


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCCC
Q 006019          602 EEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPD  642 (664)
Q Consensus       602 ~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~~  642 (664)
                      ...+..+.+++.+||+.||++||++.++++.|+++......
T Consensus       233 ~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~  273 (279)
T 1qpc_A          233 DNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTATEG  273 (279)
T ss_dssp             TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC--
T ss_pred             ccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHhccC
Confidence            23345789999999999999999999999999999765443

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=1.6e-38  Score=330.81  Aligned_cols=245  Identities=22%  Similarity=0.344  Sum_probs=195.6

Q ss_pred             hhcccccCCCeEEEEEEE------CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCce
Q 006019          374 FSNVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  447 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~------~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  447 (664)
                      +.+.||+|+||.||+|+.      .++..||||++....    .....+.+.+|++++++++||||+++++++.+.+  .
T Consensus        27 ~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~  100 (314)
T 2ivs_A           27 LGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENA----SPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDG--P  100 (314)
T ss_dssp             EEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTC----CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS--S
T ss_pred             eeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCC----CHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCC--c
Confidence            458899999999999986      245789999886322    2344578999999999999999999999998876  5


Q ss_pred             eEEEEEecCCCChhhhhcccCC----------------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCC
Q 006019          448 RMMVFEYAPNGTLFEHIHIKES----------------------EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNS  505 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~~~----------------------~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~  505 (664)
                      .++||||+++|+|.+++.....                      ..+++..+.+++.+++.||+|||+.+  |+||||||
T Consensus       101 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--ivH~dikp  178 (314)
T 2ivs_A          101 LLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMK--LVHRDLAA  178 (314)
T ss_dssp             CEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHTT--EECCCCSG
T ss_pred             eEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHCC--Ccccccch
Confidence            6999999999999999874322                      34899999999999999999999998  99999999


Q ss_pred             CCeEecCCCceEecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCC
Q 006019          506 SAVHLTEDYAAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNG  573 (664)
Q Consensus       506 ~NILld~~~~~kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~  573 (664)
                      +||++++++.+||+|||+++.....           ...+.+||......++.++||||||+++|||+| |+.||.... 
T Consensus       179 ~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~-  257 (314)
T 2ivs_A          179 RNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIP-  257 (314)
T ss_dssp             GGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC-
T ss_pred             heEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCC-
Confidence            9999999999999999998755321           123556776666667899999999999999999 999995322 


Q ss_pred             ChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          574 SLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       574 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                       ..+........ .         ....+...+..+.+++.+||+.||++||++.++++.|+++..
T Consensus       258 -~~~~~~~~~~~-~---------~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~  311 (314)
T 2ivs_A          258 -PERLFNLLKTG-H---------RMERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMV  311 (314)
T ss_dssp             -GGGHHHHHHTT-C---------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -HHHHHHHhhcC-C---------cCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence             22222222211 1         011122334578999999999999999999999999999865

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=2.2e-38  Score=333.15  Aligned_cols=251  Identities=21%  Similarity=0.346  Sum_probs=198.7

Q ss_pred             hhhhcccccCCCeEEEEEEEC--------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEec
Q 006019          372 EDFSNVIGSSPIGTVYKGTLS--------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEE  442 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~~--------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~  442 (664)
                      ..+.+.||+|+||.||+|+..        ++..||||++....    .....+.+.+|+++++++ +||||+++++++..
T Consensus        37 y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~  112 (334)
T 2pvf_A           37 LTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA----TEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ  112 (334)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             eEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCC----cHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEcc
Confidence            345589999999999999863        46789999886332    234457799999999999 89999999999988


Q ss_pred             CCCceeEEEEEecCCCChhhhhcccC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCe
Q 006019          443 EEPFTRMMVFEYAPNGTLFEHIHIKE--------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAV  508 (664)
Q Consensus       443 ~~~~~~~lV~Ey~~~GsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NI  508 (664)
                      .+  ..++||||+++|+|.+++....              ...+++..+..++.+++.||+|||+.+  |+||||||+||
T Consensus       113 ~~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dlkp~NI  188 (334)
T 2pvf_A          113 DG--PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK--CIHRDLAARNV  188 (334)
T ss_dssp             SS--CCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGE
T ss_pred             CC--ceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC--eeCCCCccceE
Confidence            76  6699999999999999987432              134899999999999999999999998  99999999999


Q ss_pred             EecCCCceEecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChH
Q 006019          509 HLTEDYAAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLE  576 (664)
Q Consensus       509 Lld~~~~~kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~  576 (664)
                      +++.++.+||+|||+++.....           ...+.+||......++.++||||||+++|||+| |+.||..  ....
T Consensus       189 ll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~--~~~~  266 (334)
T 2pvf_A          189 LVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPG--IPVE  266 (334)
T ss_dssp             EECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTT--CCHH
T ss_pred             EEcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCc--CCHH
Confidence            9999999999999998755321           123556776666667899999999999999999 9999943  3333


Q ss_pred             HHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCCC
Q 006019          577 DWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPD  642 (664)
Q Consensus       577 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~~  642 (664)
                      +..........          ...+..+...+.+++.+||+.||++||++.++++.|+++....+.
T Consensus       267 ~~~~~~~~~~~----------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~~~~~  322 (334)
T 2pvf_A          267 ELFKLLKEGHR----------MDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLTTN  322 (334)
T ss_dssp             HHHHHHHHTCC----------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHhcCCC----------CCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhcccc
Confidence            43333322211          011222345689999999999999999999999999999876443

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=7.3e-38  Score=318.73  Aligned_cols=245  Identities=24%  Similarity=0.362  Sum_probs=185.8

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.+.||+|+||.||+|+.. +..+|||++........ ....+.+.+|++++++++||||+++++++...+  ..++|||
T Consensus        11 ~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~e   86 (271)
T 3dtc_A           11 LEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDI-SQTIENVRQEAKLFAMLKHPNIIALRGVCLKEP--NLCLVME   86 (271)
T ss_dssp             EEEEEEEETTEEEEEEEET-TEEEEEEEC-----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC----CEEEEE
T ss_pred             eeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccH-HHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCC--ceEEEEE
Confidence            4588999999999999975 78999999865433221 223467999999999999999999999998776  6699999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CeEEeCcCCCCeEecC--------CCceEecccCch
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNP-PIAHNYLNSSAVHLTE--------DYAAKLSDLSFW  524 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~-~ivHrDLk~~NILld~--------~~~~kl~DfGla  524 (664)
                      |+++|+|.+++.   ...+++..+..++.+++.||+|||+.+. +|+||||||+|||++.        ++.+||+|||++
T Consensus        87 ~~~~~~L~~~~~---~~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~  163 (271)
T 3dtc_A           87 FARGGPLNRVLS---GKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLA  163 (271)
T ss_dssp             CCTTEEHHHHHT---SSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC-
T ss_pred             cCCCCCHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCcc
Confidence            999999999985   3468999999999999999999998773 4899999999999996        678999999998


Q ss_pred             hhhhhh-------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 006019          525 NEIAMA-------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  597 (664)
Q Consensus       525 ~~~~~~-------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  597 (664)
                      +.....       ...+.+||......++.++||||||+++|||+||+.||...  ...............         
T Consensus       164 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~--~~~~~~~~~~~~~~~---------  232 (271)
T 3dtc_A          164 REWHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGI--DGLAVAYGVAMNKLA---------  232 (271)
T ss_dssp             ------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTS--CHHHHHHHHHTSCCC---------
T ss_pred             cccccccccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHhhhcCCCC---------
Confidence            765322       23455777776777899999999999999999999999432  222222222221110         


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 006019          598 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  636 (664)
Q Consensus       598 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i  636 (664)
                      ...+..++..+.+++.+||+.||++||++.|+++.|+++
T Consensus       233 ~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l  271 (271)
T 3dtc_A          233 LPIPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI  271 (271)
T ss_dssp             CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred             CCCCcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence            111223345789999999999999999999999999864

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=2.3e-38  Score=329.46  Aligned_cols=251  Identities=22%  Similarity=0.328  Sum_probs=199.3

Q ss_pred             hhhhcccccCCCeEEEEEEE------CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCC
Q 006019          372 EDFSNVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEE  444 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~------~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~  444 (664)
                      ..+.+.||+|+||.||+|+.      .++..||||.+....    .....+.+.+|+++++++ +||||+++++++...+
T Consensus        25 y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~  100 (313)
T 1t46_A           25 LSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSA----HLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG  100 (313)
T ss_dssp             EEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             hhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcch----hHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCC
Confidence            34558999999999999985      346789999986432    123457899999999999 9999999999998877


Q ss_pred             CceeEEEEEecCCCChhhhhcccCC----------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCe
Q 006019          445 PFTRMMVFEYAPNGTLFEHIHIKES----------------EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAV  508 (664)
Q Consensus       445 ~~~~~lV~Ey~~~GsL~~~l~~~~~----------------~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NI  508 (664)
                        ..++||||+++|+|.+++.....                ..+++..+.+++.+++.||+|||+.+  |+||||||+||
T Consensus       101 --~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~Ni  176 (313)
T 1t46_A          101 --PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKN--CIHRDLAARNI  176 (313)
T ss_dssp             --SCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGE
T ss_pred             --CcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCccceE
Confidence              56999999999999999875432                25899999999999999999999998  99999999999


Q ss_pred             EecCCCceEecccCchhhhhhhh-----------hhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChH
Q 006019          509 HLTEDYAAKLSDLSFWNEIAMAE-----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLE  576 (664)
Q Consensus       509 Lld~~~~~kl~DfGla~~~~~~~-----------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~  576 (664)
                      +++.++.+||+|||+++......           ..+.+||......++.++||||||+++|||+| |+.||......  
T Consensus       177 l~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--  254 (313)
T 1t46_A          177 LLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVD--  254 (313)
T ss_dssp             EEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSS--
T ss_pred             EEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccch--
Confidence            99999999999999987664221           23567777666778999999999999999999 99999533222  


Q ss_pred             HHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCC
Q 006019          577 DWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP  641 (664)
Q Consensus       577 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~  641 (664)
                      +..........  ..       ..+...+..+.+++.+||+.||++||++.|+++.|+++....+
T Consensus       255 ~~~~~~~~~~~--~~-------~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~  310 (313)
T 1t46_A          255 SKFYKMIKEGF--RM-------LSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISEST  310 (313)
T ss_dssp             HHHHHHHHHTC--CC-------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHhccCC--CC-------CCcccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHhh
Confidence            11222221110  00       0112233568999999999999999999999999999876443

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=1.2e-37  Score=329.83  Aligned_cols=247  Identities=19%  Similarity=0.242  Sum_probs=193.7

Q ss_pred             HhhhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeE
Q 006019          371 CEDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  449 (664)
Q Consensus       371 ~~~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~  449 (664)
                      .+.+.+.||+|+||.||+|+.. +++.||||++.............+.+.+|++++++++||||+++++++.+.+  ..+
T Consensus        25 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~--~~~  102 (351)
T 3c0i_A           25 VYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDG--MLY  102 (351)
T ss_dssp             HEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETT--EEE
T ss_pred             ceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC--EEE
Confidence            3455689999999999999964 6899999998754322111123567999999999999999999999998877  779


Q ss_pred             EEEEecCCCChhhhhccc--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCc---eEecccCch
Q 006019          450 MVFEYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA---AKLSDLSFW  524 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~---~kl~DfGla  524 (664)
                      +||||+++|+|.+++...  ....+++..+..++.+++.||+|||+++  |+||||||+|||++.++.   +||+|||++
T Consensus       103 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~--ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a  180 (351)
T 3c0i_A          103 MVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNN--IIHRDVKPHCVLLASKENSAPVKLGGFGVA  180 (351)
T ss_dssp             EEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECSSSTTCCEEECCCTTC
T ss_pred             EEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCC--ceeccCChHHeEEecCCCCCcEEEecCcce
Confidence            999999999998887533  3446899999999999999999999998  999999999999987654   999999998


Q ss_pred             hhhhh---------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCC
Q 006019          525 NEIAM---------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  595 (664)
Q Consensus       525 ~~~~~---------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~  595 (664)
                      +....         ....+.+||......++.++|||||||++|||+||+.||...   ..+................  
T Consensus       181 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~---~~~~~~~i~~~~~~~~~~~--  255 (351)
T 3c0i_A          181 IQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGT---KERLFEGIIKGKYKMNPRQ--  255 (351)
T ss_dssp             EECCTTSCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSS---HHHHHHHHHHTCCCCCHHH--
T ss_pred             eEecCCCeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCc---HHHHHHHHHcCCCCCCccc--
Confidence            76532         234566788877778899999999999999999999999532   2233333332211111000  


Q ss_pred             CCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          596 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       596 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                       .    ...+.++.+++.+||+.||++||++.|+++
T Consensus       256 -~----~~~s~~~~~li~~~L~~dP~~R~s~~e~l~  286 (351)
T 3c0i_A          256 -W----SHISESAKDLVRRMLMLDPAERITVYEALN  286 (351)
T ss_dssp             -H----TTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             -c----ccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence             0    112356889999999999999999999975

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=2.3e-37  Score=328.33  Aligned_cols=244  Identities=18%  Similarity=0.272  Sum_probs=195.0

Q ss_pred             hhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCC-chhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDW-PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  450 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~l  450 (664)
                      .+.+.||+|+||.||+|+.. +|..+|+|.+........ .....+.+.+|++++++++||||+++++++.+.+  ..++
T Consensus        15 ~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~--~~~l   92 (361)
T 2yab_A           15 DIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRT--DVVL   92 (361)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--EEEE
T ss_pred             EEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCC--EEEE
Confidence            34588999999999999975 589999999976543321 1123467999999999999999999999998876  7799


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC----ceEecccCchhh
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY----AAKLSDLSFWNE  526 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~----~~kl~DfGla~~  526 (664)
                      ||||+++|+|.+++.  ....+++..+..++.+|+.||+|||+.+  |+||||||+|||++.++    .+||+|||+++.
T Consensus        93 v~e~~~gg~L~~~l~--~~~~l~~~~~~~i~~qi~~aL~~LH~~g--ivHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~  168 (361)
T 2yab_A           93 ILELVSGGELFDFLA--QKESLSEEEATSFIKQILDGVNYLHTKK--IAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHE  168 (361)
T ss_dssp             EEECCCSCBHHHHHT--TCSCCBHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEESCTTSSSCCEEECCCSSCEE
T ss_pred             EEEcCCCCcHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEEeCCCCCccCEEEEecCCceE
Confidence            999999999999986  3457999999999999999999999998  99999999999999877    799999999876


Q ss_pred             hhh--------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 006019          527 IAM--------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       527 ~~~--------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                      ...        ....+.+||......++.++|||||||++|||++|+.||..  ....+....+...........     
T Consensus       169 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~--~~~~~~~~~i~~~~~~~~~~~-----  241 (361)
T 2yab_A          169 IEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLG--DTKQETLANITAVSYDFDEEF-----  241 (361)
T ss_dssp             CCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCC--SSHHHHHHHHHTTCCCCCHHH-----
T ss_pred             cCCCCccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHHhcCCCCCchh-----
Confidence            532        23346678887777889999999999999999999999943  233344433333211111000     


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                        .......+.+++.+||+.||++||++.|+++
T Consensus       242 --~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~  272 (361)
T 2yab_A          242 --FSQTSELAKDFIRKLLVKETRKRLTIQEALR  272 (361)
T ss_dssp             --HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             --ccCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence              0112356889999999999999999999874

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.7e-37  Score=323.74  Aligned_cols=245  Identities=19%  Similarity=0.292  Sum_probs=194.5

Q ss_pred             hhhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCC-chhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeE
Q 006019          372 EDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDW-PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  449 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~  449 (664)
                      +.+.+.||+|+||.||+|+.. +|..||+|.+........ .....+.+.+|++++++++||||+++++++...+  ..+
T Consensus        13 y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~   90 (326)
T 2y0a_A           13 YDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKT--DVI   90 (326)
T ss_dssp             EEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EEE
T ss_pred             eEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC--EEE
Confidence            345689999999999999975 589999999876543221 1123567999999999999999999999998876  779


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC----ceEecccCchh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY----AAKLSDLSFWN  525 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~----~~kl~DfGla~  525 (664)
                      +||||+++|+|.+++.  ....+++..+..++.+++.||+|||+.+  |+||||||+|||++.++    .+||+|||+++
T Consensus        91 lv~e~~~~~~L~~~l~--~~~~~~~~~~~~i~~qi~~al~~lH~~~--ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~  166 (326)
T 2y0a_A           91 LILELVAGGELFDFLA--EKESLTEEEATEFLKQILNGVYYLHSLQ--IAHFDLKPENIMLLDRNVPKPRIKIIDFGLAH  166 (326)
T ss_dssp             EEEECCCSCBHHHHHT--TSSCCBHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEESCSSSSSCCEEECCCTTCE
T ss_pred             EEEEcCCCCCHHHHHH--hcCCcCHHHHHHHHHHHHHHHHHHHHCC--eEcCCCCHHHEEEecCCCCCCCEEEEECCCCe
Confidence            9999999999999986  3456999999999999999999999998  99999999999999887    89999999987


Q ss_pred             hhhh--------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 006019          526 EIAM--------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  597 (664)
Q Consensus       526 ~~~~--------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  597 (664)
                      ....        ....+.+||......++.++|||||||++|||+||+.||...  ...+...............     
T Consensus       167 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~--~~~~~~~~~~~~~~~~~~~-----  239 (326)
T 2y0a_A          167 KIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD--TKQETLANVSAVNYEFEDE-----  239 (326)
T ss_dssp             ECCTTSCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS--SHHHHHHHHHHTCCCCCHH-----
T ss_pred             ECCCCCccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCC--CHHHHHHHHHhcCCCcCcc-----
Confidence            6532        223456788877778899999999999999999999999432  2333333222221111100     


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          598 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       598 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                        .....+..+.+++.+||+.||++|||+.|+++
T Consensus       240 --~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  271 (326)
T 2y0a_A          240 --YFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ  271 (326)
T ss_dssp             --HHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             --ccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence              00112356889999999999999999999986

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=2.8e-37  Score=321.07  Aligned_cols=254  Identities=22%  Similarity=0.337  Sum_probs=196.3

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|.. .+|..||+|++......+  .....++.+|++++++++||||+++++++...+  ..++||
T Consensus        36 ~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~  111 (310)
T 2wqm_A           36 IEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMD--AKARADCIKEIDLLKQLNHPNVIKYYASFIEDN--ELNIVL  111 (310)
T ss_dssp             EEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCC--HHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             EEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccC--HHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC--cEEEEE
Confidence            458899999999999996 478999999986533222  345678999999999999999999999999877  679999


Q ss_pred             EecCCCChhhhhcc--cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh
Q 006019          453 EYAPNGTLFEHIHI--KESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~--~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~  530 (664)
                      ||+++|+|.+++..  .....+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++.....
T Consensus       112 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~--i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~~  189 (310)
T 2wqm_A          112 ELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRR--VMHRDIKPANVFITATGVVKLGDLGLGRFFSSK  189 (310)
T ss_dssp             ECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECTTSCEEECCC---------
T ss_pred             ecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhCC--eeCCCCcHHHEEEcCCCCEEEEeccceeeecCC
Confidence            99999999998863  23566899999999999999999999998  999999999999999999999999998765321


Q ss_pred             ---------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 006019          531 ---------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  601 (664)
Q Consensus       531 ---------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  601 (664)
                               ...+.+||......++.++||||||+++|||+||+.||........++........  .....       .
T Consensus       190 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~-------~  260 (310)
T 2wqm_A          190 TTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCD--YPPLP-------S  260 (310)
T ss_dssp             ---------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHHHHHHTTC--SCCCC-------T
T ss_pred             CccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHHHHHHHhhccc--CCCCc-------c
Confidence                     22355778777778899999999999999999999999655444444444333221  11110       1


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCCC
Q 006019          602 EEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPD  642 (664)
Q Consensus       602 ~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~~  642 (664)
                      ...+.++.+++.+||+.||++||++.+|++.|+++....++
T Consensus       261 ~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~~~  301 (310)
T 2wqm_A          261 DHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTAS  301 (310)
T ss_dssp             TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC-
T ss_pred             cccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhhhh
Confidence            12235688999999999999999999999999999765443

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.5e-37  Score=324.92  Aligned_cols=238  Identities=15%  Similarity=0.226  Sum_probs=192.5

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. ++..+|+|.+....      .....+.+|+++++.++||||+++++++.+.+  ..++||
T Consensus         9 ~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~------~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~--~~~lv~   80 (321)
T 1tki_A            9 IAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG------TDQVLVKKEISILNIARHRNILHLHESFESME--ELVMIF   80 (321)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT------HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             eeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc------ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCC--EEEEEE
Confidence            4578999999999999975 58899999886321      23467899999999999999999999998877  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecC--CCceEecccCchhhhhhh
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE--DYAAKLSDLSFWNEIAMA  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~--~~~~kl~DfGla~~~~~~  530 (664)
                      ||+++|+|.+++.. ....+++..+..++.+++.||+|||+.+  |+||||||+|||++.  ++.+||+|||+++.....
T Consensus        81 e~~~g~~L~~~l~~-~~~~~~~~~~~~i~~qi~~al~~lH~~g--ivH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~  157 (321)
T 1tki_A           81 EFISGLDIFERINT-SAFELNEREIVSYVHQVCEALQFLHSHN--IGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPG  157 (321)
T ss_dssp             CCCCCCBHHHHHTS-SSCCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEESSSSCCCEEECCCTTCEECCTT
T ss_pred             EeCCCCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCC
Confidence            99999999999863 3346999999999999999999999998  999999999999997  789999999998765322


Q ss_pred             --------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          531 --------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       531 --------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                              ...+.+||......++.++|||||||++|||+||+.||..  ....+................       ..
T Consensus       158 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~--~~~~~~~~~i~~~~~~~~~~~-------~~  228 (321)
T 1tki_A          158 DNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLA--ETNQQIIENIMNAEYTFDEEA-------FK  228 (321)
T ss_dssp             CEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHHTCCCCCHHH-------HT
T ss_pred             CccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcC--CCHHHHHHHHHcCCCCCChhh-------hc
Confidence                    2345678877777789999999999999999999999943  333444444443321111100       01


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          603 EQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ..+.++.+++.+||+.||++|||+.|+++
T Consensus       229 ~~s~~~~~li~~~L~~dp~~Rpt~~e~l~  257 (321)
T 1tki_A          229 EISIEAMDFVDRLLVKERKSRMTASEALQ  257 (321)
T ss_dssp             TSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             cCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            12356889999999999999999999987

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=9.7e-39  Score=334.60  Aligned_cols=243  Identities=19%  Similarity=0.297  Sum_probs=189.0

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcE----EEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVE----IAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~----vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      +.+.||+|+||.||+|++. ++..    |++|.+......    ...+.+.+|+.++++++||||+++++++.+.   ..
T Consensus        17 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~----~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~---~~   89 (325)
T 3kex_A           17 KLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGR----QSFQAVTDHMLAIGSLDHAHIVRLLGLCPGS---SL   89 (325)
T ss_dssp             EEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSC----SCBCSCCHHHHHHHTCCCTTBCCEEEEECBS---SE
T ss_pred             eeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccH----HHHHHHHHHHHHHhcCCCCCcCeEEEEEcCC---cc
Confidence            3478999999999999964 4444    666666433211    1224578899999999999999999999643   46


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++|+||+++|+|.+++... ...+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...
T Consensus        90 ~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~  166 (325)
T 3kex_A           90 QLVTQYLPLGSLLDHVRQH-RGALGPQLLLNWGVQIAKGMYYLEEHG--MVHRNLAARNVLLKSPSQVQVADFGVADLLP  166 (325)
T ss_dssp             EEEEECCTTCBSHHHHHSS-GGGSCTTHHHHHHHHHHHHHHHHHHTT--CCCSCCSSTTEEESSSSCEEECSCSGGGGSC
T ss_pred             EEEEEeCCCCCHHHHHHHc-cccCCHHHHHHHHHHHHHHHHHHHhCC--CCCCccchheEEECCCCeEEECCCCcccccC
Confidence            8999999999999998632 457899999999999999999999998  9999999999999999999999999998653


Q ss_pred             hh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCC
Q 006019          529 MA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  596 (664)
Q Consensus       529 ~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  596 (664)
                      ..           ...+.+||......++.++|||||||++|||+| |+.||.....  .+........ ...   .   
T Consensus       167 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~--~~~~~~~~~~-~~~---~---  237 (325)
T 3kex_A          167 PDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRL--AEVPDLLEKG-ERL---A---  237 (325)
T ss_dssp             CCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCT--THHHHHHHTT-CBC---C---
T ss_pred             cccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCH--HHHHHHHHcC-CCC---C---
Confidence            21           124566777766778999999999999999999 9999953322  2222222221 110   0   


Q ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          597 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       597 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                         .+..+...+.+++.+||+.||++||++.++++.|+.+..
T Consensus       238 ---~~~~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~  276 (325)
T 3kex_A          238 ---QPQICTIDVYMVMVKCWMIDENIRPTFKELANEFTRMAR  276 (325)
T ss_dssp             ---CCTTBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTT
T ss_pred             ---CCCcCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence               111122347789999999999999999999999999864

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.3e-37  Score=325.29  Aligned_cols=245  Identities=21%  Similarity=0.360  Sum_probs=194.1

Q ss_pred             hhcccccCCCeEEEEEEECC-----CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          374 FSNVIGSSPIGTVYKGTLSN-----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~-----~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      +.+.||+|+||.||+|+...     +..||||.+....    ......+|.+|++++++++||||+++++++...+  ..
T Consensus        48 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~  121 (333)
T 1mqb_A           48 RQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY----TEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYK--PM  121 (333)
T ss_dssp             EEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC----CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSS--SE
T ss_pred             cccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCC----CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCC--Cc
Confidence            34789999999999998643     2358999885322    2344567999999999999999999999998776  67


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++||||+++|+|.+++.. ....+++..+..++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||+++...
T Consensus       122 ~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~  198 (333)
T 1mqb_A          122 MIITEYMENGALDKFLRE-KDGEFSVLQLVGMLRGIAAGMKYLANMN--YVHRDLAARNILVNSNLVCKVSDFGLSRVLE  198 (333)
T ss_dssp             EEEEECCTTEEHHHHHHH-TTTCSCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEECTTCCEEECCCCC-----
T ss_pred             EEEEeCCCCCcHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeCCCCChheEEECCCCcEEECCCCcchhhc
Confidence            999999999999999864 3457999999999999999999999998  9999999999999999999999999988653


Q ss_pred             hh------------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCC
Q 006019          529 MA------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  595 (664)
Q Consensus       529 ~~------------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~  595 (664)
                      ..            ...+.+||......++.++|||||||++|||+| |+.||..  ....+.......+..        
T Consensus       199 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~--~~~~~~~~~~~~~~~--------  268 (333)
T 1mqb_A          199 DDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWE--LSNHEVMKAINDGFR--------  268 (333)
T ss_dssp             ------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTT--CCHHHHHHHHHTTCC--------
T ss_pred             cccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCccc--CCHHHHHHHHHCCCc--------
Confidence            21            123667887777788999999999999999999 9999943  233333333322211        


Q ss_pred             CCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          596 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       596 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                        ...+..++..+.+++.+||+.||++||++.++++.|+++...
T Consensus       269 --~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~  310 (333)
T 1mqb_A          269 --LPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRA  310 (333)
T ss_dssp             --CCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred             --CCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence              011223345789999999999999999999999999998754

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=7.6e-38  Score=325.71  Aligned_cols=249  Identities=20%  Similarity=0.248  Sum_probs=187.7

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.+.||+|+||.||+|+..+|+.||+|++......   ....+.+.+|++++++++||||+++++++.+.+  ..++|||
T Consensus        25 ~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~lv~e   99 (311)
T 3niz_A           25 KLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAED---EGIPSTAIREISLLKELHHPNIVSLIDVIHSER--CLTLVFE   99 (311)
T ss_dssp             EEEEEEECSSCEEEEEEETTSCEEEEEEEC---------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSS--CEEEEEE
T ss_pred             hhhhccCCCCeEEEEEEECCCCEEEEEEEeccccc---chhhHHHHHHHHHHHHcCCCCEeeeeeEEccCC--EEEEEEc
Confidence            34789999999999999988999999998654322   234567899999999999999999999998776  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++ +|.+++.. ....+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....    
T Consensus       100 ~~~~-~l~~~~~~-~~~~~~~~~~~~~~~qi~~~l~~LH~~~--ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~  175 (311)
T 3niz_A          100 FMEK-DLKKVLDE-NKTGLQDSQIKIYLYQLLRGVAHCHQHR--ILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRS  175 (311)
T ss_dssp             CCSE-EHHHHHHT-CTTCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECTTCCEEECCCTTCEETTSCCC-
T ss_pred             CCCC-CHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCchHhEEECCCCCEEEccCcCceecCCCccc
Confidence            9984 88888763 3456999999999999999999999998  99999999999999999999999999876531    


Q ss_pred             -----hhhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCC-ChHHHHHHHhcCCCC--Cccc------cC
Q 006019          530 -----AEMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNG-SLEDWAADYLSGVQP--LQQF------VD  594 (664)
Q Consensus       530 -----~~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~-~~~~~~~~~~~~~~~--~~~~------~d  594 (664)
                           ....+.+||.... ..++.++|||||||++|||+||+.||..... .....+.........  ....      .+
T Consensus       176 ~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  255 (311)
T 3niz_A          176 YTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQELPLWKQ  255 (311)
T ss_dssp             --CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHHHHHHHCCCCTTTSGGGTTSHHHHS
T ss_pred             ccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHCCCChHHhhhhhccchhhh
Confidence                 1234567776654 5689999999999999999999999953222 222222221111100  0000      00


Q ss_pred             CCC---CC-----CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          595 PTL---SS-----FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       595 ~~~---~~-----~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ...   ..     ..+....++.+++.+||+.||++|||++|+++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  300 (311)
T 3niz_A          256 RTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN  300 (311)
T ss_dssp             CCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             cccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence            000   00     01122356889999999999999999999886

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=9.9e-38  Score=326.57  Aligned_cols=239  Identities=19%  Similarity=0.266  Sum_probs=187.2

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. +++.||||++......    ...+.+.+|+.+++.++||||+++++++.+.+  ..++||
T Consensus        11 i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~--~~~lv~   84 (323)
T 3tki_A           11 LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAV----DCPENIKKEICINKMLNHENVVKFYGHRREGN--IQYLFL   84 (323)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-----------CHHHHHHHHHHCCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             eeeEEecCCCEEEEEEEECCCCcEEEEEEEEccccc----chHHHHHHHHHHHHhCCCCCCCeEEEEEecCC--eEEEEE
Confidence            3478999999999999975 6899999998654322    22356889999999999999999999998877  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++|+|.+++.  ....+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....   
T Consensus        85 e~~~~~~L~~~l~--~~~~~~~~~~~~i~~qi~~aL~~LH~~g--ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  160 (323)
T 3tki_A           85 EYCSGGELFDRIE--PDIGMPEPDAQRFFHQLMAGVVYLHGIG--ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNR  160 (323)
T ss_dssp             ECCTTEEGGGGSB--TTTBCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECTTCCEEECCCTTCEECEETTE
T ss_pred             EcCCCCcHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHHHCC--ccccccchHHEEEeCCCCEEEEEeeccceeccCCc
Confidence            9999999999986  3456999999999999999999999999  99999999999999999999999999875421   


Q ss_pred             --------hhhhcccccccCCCC-CCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 006019          530 --------AEMAATSKKLSSAPS-ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  600 (664)
Q Consensus       530 --------~~~~~~~pe~~~~~~-~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  600 (664)
                              ....+.+||...... .+.++|||||||++|||+||+.||.........+.. ........         ..
T Consensus       161 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~-~~~~~~~~---------~~  230 (323)
T 3tki_A          161 ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSD-WKEKKTYL---------NP  230 (323)
T ss_dssp             ECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHH-HHTTCTTS---------TT
T ss_pred             ccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHH-HhcccccC---------Cc
Confidence                    123455677665544 377899999999999999999999644332222221 11111100         00


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          601 DEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       601 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      .......+.+++.+||+.||++||++.|+++.
T Consensus       231 ~~~~~~~~~~li~~~L~~dP~~R~t~~eil~h  262 (323)
T 3tki_A          231 WKKIDSAPLALLHKILVENPSARITIPDIKKD  262 (323)
T ss_dssp             GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             cccCCHHHHHHHHHHccCChhhCcCHHHHhhC
Confidence            12233568899999999999999999998764

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=4.4e-37  Score=317.80  Aligned_cols=242  Identities=21%  Similarity=0.258  Sum_probs=184.7

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCC---------------------chhHHHHHHHHHHHHhccCCC
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDW---------------------PKNLEVQFRKKIDTLSKVNHK  431 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~---------------------~~~~~~~f~~E~~~l~~l~H~  431 (664)
                      +.+.||+|+||.||+|+.. +++.||||++........                     .....+.|.+|++++++++||
T Consensus        17 ~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~   96 (298)
T 2zv2_A           17 LKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDHP   96 (298)
T ss_dssp             EEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHTCCCT
T ss_pred             EEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHhCCCC
Confidence            4578999999999999964 688999999875432110                     011235689999999999999


Q ss_pred             cccceEEEEecCCCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEec
Q 006019          432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT  511 (664)
Q Consensus       432 niv~l~g~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld  511 (664)
                      ||+++++++.+......++||||+++|+|.+++.   ...+++..+..++.+++.||+|||+.+  |+||||||+|||++
T Consensus        97 ~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~Dlkp~Nil~~  171 (298)
T 2zv2_A           97 NVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPT---LKPLSEDQARFYFQDLIKGIEYLHYQK--IIHRDIKPSNLLVG  171 (298)
T ss_dssp             TBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSC---SSCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEEC
T ss_pred             CCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCCHHHEEEC
Confidence            9999999998743336799999999999988763   356999999999999999999999998  99999999999999


Q ss_pred             CCCceEecccCchhhhhh---------hhhhcccccccCCCC---CCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHH
Q 006019          512 EDYAAKLSDLSFWNEIAM---------AEMAATSKKLSSAPS---ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWA  579 (664)
Q Consensus       512 ~~~~~kl~DfGla~~~~~---------~~~~~~~pe~~~~~~---~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~  579 (664)
                      .++.+||+|||+++....         ....+.+||......   .+.++|||||||++|||+||+.||..  .....+.
T Consensus       172 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~--~~~~~~~  249 (298)
T 2zv2_A          172 EDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMD--ERIMCLH  249 (298)
T ss_dssp             TTSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHH
T ss_pred             CCCCEEEecCCCccccccccccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCC--ccHHHHH
Confidence            999999999999876532         234566788765544   37789999999999999999999943  2333333


Q ss_pred             HHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          580 ADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       580 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ..........     +..    ...+..+.+++.+||+.||++||++.|+++
T Consensus       250 ~~~~~~~~~~-----~~~----~~~~~~l~~li~~~l~~dp~~R~s~~e~l~  292 (298)
T 2zv2_A          250 SKIKSQALEF-----PDQ----PDIAEDLKDLITRMLDKNPESRIVVPEIKL  292 (298)
T ss_dssp             HHHHHCCCCC-----CSS----SCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             HHHhcccCCC-----CCc----cccCHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence            3332221111     111    122356889999999999999999999864

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=6.8e-38  Score=328.40  Aligned_cols=238  Identities=16%  Similarity=0.260  Sum_probs=187.3

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC-------
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP-------  445 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~-------  445 (664)
                      +.+.||+|+||.||+|+.. +|+.||||++.....    ....+.+.+|++++++++|||||++++++.+...       
T Consensus        10 ~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~----~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~   85 (332)
T 3qd2_B           10 PIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNR----ELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEEM   85 (332)
T ss_dssp             EEEEEECC-CSEEEEEEETTTCCEEEEEEEECCST----TTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHHH
T ss_pred             eeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCc----hhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhhh
Confidence            3488999999999999976 789999999975432    2345789999999999999999999999865432       


Q ss_pred             ------------------------------------------------ceeEEEEEecCCCChhhhhcccC-CCCCCHHH
Q 006019          446 ------------------------------------------------FTRMMVFEYAPNGTLFEHIHIKE-SEHLDWGM  476 (664)
Q Consensus       446 ------------------------------------------------~~~~lV~Ey~~~GsL~~~l~~~~-~~~l~~~~  476 (664)
                                                                      ...++||||+++|+|.+++.... .....+..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~  165 (332)
T 3qd2_B           86 DEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGV  165 (332)
T ss_dssp             HC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHHH
T ss_pred             hhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhHH
Confidence                                                            12689999999999999987542 24567788


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---------------------hhhhcc
Q 006019          477 RLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---------------------AEMAAT  535 (664)
Q Consensus       477 ~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---------------------~~~~~~  535 (664)
                      +.+|+.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....                     ....+.
T Consensus       166 ~~~i~~qi~~aL~~LH~~~--ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~  243 (332)
T 3qd2_B          166 CLHIFIQIAEAVEFLHSKG--LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYM  243 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGGGS
T ss_pred             HHHHHHHHHHHHHHHHhCC--eeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcCcc
Confidence            9999999999999999998  99999999999999999999999999876532                     233456


Q ss_pred             cccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHh
Q 006019          536 SKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSC  615 (664)
Q Consensus       536 ~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~C  615 (664)
                      +||......++.++|||||||++|||+||..|+..    ..+.......          .............+.+++.+|
T Consensus       244 aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~----~~~~~~~~~~----------~~~~~~~~~~~~~~~~li~~~  309 (332)
T 3qd2_B          244 SPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQME----RVRIITDVRN----------LKFPLLFTQKYPQEHMMVQDM  309 (332)
T ss_dssp             CHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHH----HHHHHHHHHT----------TCCCHHHHHHCHHHHHHHHHH
T ss_pred             ChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhH----HHHHHHHhhc----------cCCCcccccCChhHHHHHHHH
Confidence            78877777889999999999999999999887621    1111111111          111111233445678999999


Q ss_pred             ccCCCCCCCCHHHHHH
Q 006019          616 VRADPEKRPTMRDIAA  631 (664)
Q Consensus       616 l~~~P~~RPs~~ev~~  631 (664)
                      |+.||++||++.|+++
T Consensus       310 l~~~p~~Rps~~~~l~  325 (332)
T 3qd2_B          310 LSPSPTERPEATDIIE  325 (332)
T ss_dssp             HCSSGGGSCCHHHHHH
T ss_pred             ccCCCCcCCCHHHHhh
Confidence            9999999999999886

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=3.7e-38  Score=324.11  Aligned_cols=244  Identities=19%  Similarity=0.326  Sum_probs=190.3

Q ss_pred             hhhcccccCCCeEEEEEEECC-C-------cEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCC
Q 006019          373 DFSNVIGSSPIGTVYKGTLSN-G-------VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE  444 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~~-~-------~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~  444 (664)
                      .+.+.||+|+||.||+|+... +       ..||+|.+....     ....+.|.+|++++++++||||+++++++...+
T Consensus        11 ~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~-----~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   85 (289)
T 4fvq_A           11 IFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAH-----RNYSESFFEAASMMSKLSHKHLVLNYGVCVCGD   85 (289)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGG-----GGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTT
T ss_pred             eeeeeeccCCCceEEEEEEecccccccccchhhhhhhccccc-----HHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCC
Confidence            345889999999999998643 3       468999885432     234578999999999999999999999998876


Q ss_pred             CceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCc--------e
Q 006019          445 PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA--------A  516 (664)
Q Consensus       445 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~--------~  516 (664)
                        ..++||||+++|+|.+++.. ....+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.        +
T Consensus        86 --~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~~L~~LH~~~--ivH~Dlkp~NIll~~~~~~~~~~~~~~  160 (289)
T 4fvq_A           86 --ENILVQEFVKFGSLDTYLKK-NKNCINILWKLEVAKQLAAAMHFLEENT--LIHGNVCAKNILLIREEDRKTGNPPFI  160 (289)
T ss_dssp             --CCEEEEECCTTCBHHHHHHH-TGGGCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEEEECCBGGGTBCCEE
T ss_pred             --CCEEEEECCCCCCHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHhhCC--eECCCcCcceEEEecCCccccccccee
Confidence              56999999999999999964 3345899999999999999999999999  999999999999998887        9


Q ss_pred             EecccCchhhhhh-----hhhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCc
Q 006019          517 KLSDLSFWNEIAM-----AEMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQ  590 (664)
Q Consensus       517 kl~DfGla~~~~~-----~~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~  590 (664)
                      ||+|||+++....     ....+.+||.... ..++.++||||||+++|||+||..|+... ........ .........
T Consensus       161 kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~-~~~~~~~~-~~~~~~~~~  238 (289)
T 4fvq_A          161 KLSDPGISITVLPKDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSA-LDSQRKLQ-FYEDRHQLP  238 (289)
T ss_dssp             EECCCCSCTTTSCHHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTT-SCHHHHHH-HHHTTCCCC
T ss_pred             eeccCcccccccCccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccc-cchHHHHH-HhhccCCCC
Confidence            9999999876532     2334667887665 66899999999999999999965554222 12222111 111111111


Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          591 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       591 ~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                      .           ....++.+++.+||+.||++||++.++++.|+++...
T Consensus       239 ~-----------~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p  276 (289)
T 4fvq_A          239 A-----------PKAAELANLINNCMDYEPDHRPSFRAIIRDLNSLFTP  276 (289)
T ss_dssp             C-----------CSSCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC--
T ss_pred             C-----------CCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCC
Confidence            1           1123478999999999999999999999999998763

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=5.7e-37  Score=318.77  Aligned_cols=251  Identities=16%  Similarity=0.215  Sum_probs=193.3

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. +++.||+|++......+  ....+.+.+|++++++++||||+++++++...+  ..++||
T Consensus        38 ~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~--~~~lv~  113 (309)
T 2h34_A           38 LRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSD--PVFRTRMQREARTAGRLQEPHVVPIHDFGEIDG--QLYVDM  113 (309)
T ss_dssp             EEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGS--HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             EEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccC--HHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCC--eEEEEE
Confidence            4588999999999999975 68899999986543222  344578999999999999999999999998877  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++++|.+++...  ..+++..+..++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||+++.....  
T Consensus       114 e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~--i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~  189 (309)
T 2h34_A          114 RLINGVDLAAMLRRQ--GPLAPPRAVAIVRQIGSALDAAHAAG--ATHRDVKPENILVSADDFAYLVDFGIASATTDEKL  189 (309)
T ss_dssp             ECCCCEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEECTTSCEEECSCCC---------
T ss_pred             EecCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCc--CCcCCCChHHEEEcCCCCEEEecCccCcccccccc
Confidence            999999999998643  46899999999999999999999998  999999999999999999999999998765321  


Q ss_pred             --------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          531 --------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       531 --------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                              ...+.+||......++.++||||||+++|||+||+.||....   .......+..........       +.
T Consensus       190 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~---~~~~~~~~~~~~~~~~~~-------~~  259 (309)
T 2h34_A          190 TQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQ---LSVMGAHINQAIPRPSTV-------RP  259 (309)
T ss_dssp             -------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCH---HHHHHHHHHSCCCCGGGT-------ST
T ss_pred             ccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCch---HHHHHHHhccCCCCcccc-------CC
Confidence                    234667888888888999999999999999999999994322   222222222211111111       12


Q ss_pred             HHHHHHHHHHHHhccCCCCCCC-CHHHHHHHHHhhhCCCCC
Q 006019          603 EQLETLGELIKSCVRADPEKRP-TMRDIAAILREITGITPD  642 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RP-s~~ev~~~L~~i~~~~~~  642 (664)
                      ..+.++.+++.+||+.||++|| +++++++.|+++......
T Consensus       260 ~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~~~~  300 (309)
T 2h34_A          260 GIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALATADQ  300 (309)
T ss_dssp             TCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC----
T ss_pred             CCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHhhcc
Confidence            2334688999999999999999 999999999998766443

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=4.8e-38  Score=327.29  Aligned_cols=252  Identities=22%  Similarity=0.379  Sum_probs=191.4

Q ss_pred             hhcccccCCCeEEEEEEEC----CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCc---
Q 006019          374 FSNVIGSSPIGTVYKGTLS----NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF---  446 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~----~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~---  446 (664)
                      +.+.||+|+||.||+|+..    .+..||+|.+.....   .....+.|.+|++++++++||||+++++++.+.+..   
T Consensus        38 ~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~  114 (313)
T 3brb_A           38 LGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNS---SQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQGIP  114 (313)
T ss_dssp             EEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CC---CHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC-------
T ss_pred             eccceeecCCeEEEEEEEeccCCceeEEEEEEEecccc---chhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccccCCc
Confidence            4578999999999999864    345799999865432   234456799999999999999999999999865421   


Q ss_pred             eeEEEEEecCCCChhhhhcc----cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccC
Q 006019          447 TRMMVFEYAPNGTLFEHIHI----KESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLS  522 (664)
Q Consensus       447 ~~~lV~Ey~~~GsL~~~l~~----~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfG  522 (664)
                      ..++||||+++|+|.+++..    .....+++..+.+|+.+++.||+|||+.+  |+||||||+||+++.++.+||+|||
T Consensus       115 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~dikp~NIli~~~~~~kl~Dfg  192 (313)
T 3brb_A          115 KPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRN--FLHRDLAARNCMLRDDMTVCVADFG  192 (313)
T ss_dssp             CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTT--CCCCCCSGGGEEECTTSCEEECSCS
T ss_pred             ccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCcceEEEcCCCcEEEeecC
Confidence            34899999999999998843    23456999999999999999999999998  9999999999999999999999999


Q ss_pred             chhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCc
Q 006019          523 FWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQ  590 (664)
Q Consensus       523 la~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~  590 (664)
                      +++.....           ...+.+||......++.++||||||+++|||+| |+.||....  ..+..........   
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~--~~~~~~~~~~~~~---  267 (313)
T 3brb_A          193 LSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQ--NHEMYDYLLHGHR---  267 (313)
T ss_dssp             CC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC--GGGHHHHHHTTCC---
T ss_pred             cceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCC--HHHHHHHHHcCCC---
Confidence            98765321           123556777767778999999999999999999 889984322  2222222222211   


Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCCC
Q 006019          591 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPD  642 (664)
Q Consensus       591 ~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~~  642 (664)
                             ...+...+..+.+++.+||+.||++||++.++++.|+++.+..|+
T Consensus       268 -------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~lp~  312 (313)
T 3brb_A          268 -------LKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESLPD  312 (313)
T ss_dssp             -------CCCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC--
T ss_pred             -------CCCCccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCC
Confidence                   111223345789999999999999999999999999999876554

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=2.6e-37  Score=322.20  Aligned_cols=252  Identities=20%  Similarity=0.306  Sum_probs=194.3

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecC--CCceeEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEE--EPFTRMM  450 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~~~l  450 (664)
                      +.+.||+|+||.||+++. .+++.||||++....     ....+.+.+|++++++++||||+++++++...  .....++
T Consensus        33 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l  107 (317)
T 2buj_A           33 FIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHE-----QQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWL  107 (317)
T ss_dssp             EEEEEEC--CEEEEEEEETTTCCEEEEEEEEESS-----HHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEE
T ss_pred             EEEEecCCCCeEEEEEEecCCCcEEEEEEEecCC-----HHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEE
Confidence            457899999999999996 578999999886532     33457899999999999999999999998632  2225789


Q ss_pred             EEEecCCCChhhhhccc--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          451 VFEYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      |+||+++|+|.+++...  ....+++..+..++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||+++...
T Consensus       108 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~--ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~~  185 (317)
T 2buj_A          108 LLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKG--YAHRDLKPTNILLGDEGQPVLMDLGSMNQAC  185 (317)
T ss_dssp             EEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECTTSCEEECCCSSCEESC
T ss_pred             EEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHHEEEcCCCCEEEEecCcchhcc
Confidence            99999999999988642  3467999999999999999999999998  9999999999999999999999999876432


Q ss_pred             h------------------hhhhcccccccCCCC---CCcCCcchhhHHHHHHHHhCCCCccC---CCCChHHHHHHHhc
Q 006019          529 M------------------AEMAATSKKLSSAPS---ASLESNVYNFGVLLFEMVTGRLPYLV---DNGSLEDWAADYLS  584 (664)
Q Consensus       529 ~------------------~~~~~~~pe~~~~~~---~s~ksDVySfGvvl~El~tG~~P~~~---~~~~~~~~~~~~~~  584 (664)
                      .                  ....+.+||......   ++.++||||||+++|||+||+.||..   .........    .
T Consensus       186 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~----~  261 (317)
T 2buj_A          186 IHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAV----Q  261 (317)
T ss_dssp             EEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHH----H
T ss_pred             cccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHh----h
Confidence            1                  133466788765443   58899999999999999999999842   111111111    1


Q ss_pred             CCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCCCCCC
Q 006019          585 GVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAI  645 (664)
Q Consensus       585 ~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~~~~~  645 (664)
                      ....     .+    .....+..+.+++.+||+.||++||++.++++.|+.+....|....
T Consensus       262 ~~~~-----~~----~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~~~~~~~  313 (317)
T 2buj_A          262 NQLS-----IP----QSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAPGQHT  313 (317)
T ss_dssp             CC-------CC----CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCCCCC---
T ss_pred             ccCC-----CC----ccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCCCCCCCC
Confidence            1000     01    1122335689999999999999999999999999999876665443

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=9.7e-38  Score=322.54  Aligned_cols=248  Identities=24%  Similarity=0.351  Sum_probs=191.8

Q ss_pred             hhcccccCCCeEEEEEEECC----CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeE
Q 006019          374 FSNVIGSSPIGTVYKGTLSN----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  449 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~----~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~  449 (664)
                      +.+.||+|+||.||+|+..+    ...+|+|.+....    .....+.|.+|++++++++||||++++++|.+.+. ..+
T Consensus        29 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~----~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~-~~~  103 (298)
T 3f66_A           29 FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT----DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEG-SPL  103 (298)
T ss_dssp             EEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCC----SHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSS-CCE
T ss_pred             hcceeeecCCceEEEEEEecCCCceeEEEEEecccCC----CHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCC-ceE
Confidence            45789999999999999643    2357787775321    23445789999999999999999999999765442 568


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                      +||||+++|+|.++++. ....+++..+..++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||+++....
T Consensus       104 ~v~e~~~~~~L~~~l~~-~~~~~~~~~~~~i~~ql~~~l~~lH~~~--i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~  180 (298)
T 3f66_A          104 VVLPYMKHGDLRNFIRN-ETHNPTVKDLIGFGLQVAKGMKYLASKK--FVHRDLAARNCMLDEKFTVKVADFGLARDMYD  180 (298)
T ss_dssp             EEEECCTTCBHHHHHHC-TTCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEECTTCCEEECSCGGGCCCSC
T ss_pred             EEEeCCCCCCHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHhCC--ccCCCCchheEEECCCCCEEECcccccccccc
Confidence            99999999999999963 3456899999999999999999999998  99999999999999999999999999875532


Q ss_pred             hh-------------hhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCC
Q 006019          530 AE-------------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  595 (664)
Q Consensus       530 ~~-------------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~  595 (664)
                      ..             ..+.+||......++.++||||||+++|||+| |..||....  ..+..........        
T Consensus       181 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~--~~~~~~~~~~~~~--------  250 (298)
T 3f66_A          181 KEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVN--TFDITVYLLQGRR--------  250 (298)
T ss_dssp             GGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSC--TTTHHHHHHTTCC--------
T ss_pred             cchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCC--HHHHHHHHhcCCC--------
Confidence            11             23556776666778999999999999999999 555553222  1112222222111        


Q ss_pred             CCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCC
Q 006019          596 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP  641 (664)
Q Consensus       596 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~  641 (664)
                        ...+...+..+.+++.+||+.||++||++.++++.|+++.....
T Consensus       251 --~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~  294 (298)
T 3f66_A          251 --LLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFI  294 (298)
T ss_dssp             --CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTSC
T ss_pred             --CCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhc
Confidence              01112233568999999999999999999999999999987543

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=3.4e-37  Score=323.98  Aligned_cols=237  Identities=17%  Similarity=0.219  Sum_probs=193.3

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. +|+.||+|++.......  ......+.+|++++++++||||+++++++...+  ..++||
T Consensus         9 ~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~--~~~lv~   84 (337)
T 1o6l_A            9 YLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIA--KDEVAHTVTESRVLQNTRHPFLTALKYAFQTHD--RLCFVM   84 (337)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHH--TTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             EEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhh--hhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCC--EEEEEE
Confidence            3488999999999999975 68999999997542111  123467889999999999999999999998877  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....   
T Consensus        85 E~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~~--ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~  160 (337)
T 1o6l_A           85 EYANGGELFFHLSR--ERVFTEERARFYGAEIVSALEYLHSRD--VVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA  160 (337)
T ss_dssp             ECCTTCBHHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTC
T ss_pred             eCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCcCCHHHEEECCCCCEEEeeccchhhcccCCC
Confidence            99999999998863  346899999999999999999999998  99999999999999999999999999875321   


Q ss_pred             ------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          530 ------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       530 ------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                            ....+.+||......++.++|||||||++|||+||+.||..  .+..+...........           ++..
T Consensus       161 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~--~~~~~~~~~i~~~~~~-----------~p~~  227 (337)
T 1o6l_A          161 TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYN--QDHERLFELILMEEIR-----------FPRT  227 (337)
T ss_dssp             CBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCC-----------CCTT
T ss_pred             cccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCC--CCHHHHHHHHHcCCCC-----------CCCC
Confidence                  23456788988888889999999999999999999999943  3334444443332111           1222


Q ss_pred             HHHHHHHHHHHhccCCCCCCC-----CHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRP-----TMRDIAA  631 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RP-----s~~ev~~  631 (664)
                      ...++.+++.+||+.||++||     +++|+++
T Consensus       228 ~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~  260 (337)
T 1o6l_A          228 LSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME  260 (337)
T ss_dssp             SCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             CCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHc
Confidence            335688999999999999999     8988875

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5e-38  Score=330.04  Aligned_cols=237  Identities=21%  Similarity=0.314  Sum_probs=189.1

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+. .++..||+|++.......  ......+.+|+++++.++||||+++++++...+  ..++||
T Consensus        13 i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~--~~~lv~   88 (336)
T 3h4j_B           13 IRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKK--SDMHMRVEREISYLKLLRHPHIIKLYDVITTPT--DIVMVI   88 (336)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHH--TTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             EEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccc--hhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCC--EEEEEE
Confidence            457899999999999996 578999999986432211  112357899999999999999999999998877  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+ +|+|.+++...  ..+++..+..++.+++.||+|||+.+  |+||||||+|||+++++.+||+|||+++.....  
T Consensus        89 E~~-~g~l~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~g--ivH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~~  163 (336)
T 3h4j_B           89 EYA-GGELFDYIVEK--KRMTEDEGRRFFQQIICAIEYCHRHK--IVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNF  163 (336)
T ss_dssp             CCC-CEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHHT--CCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSBT
T ss_pred             ECC-CCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCC--eEecCCchhhEEEcCCCCEEEEEeccceeccCCcc
Confidence            999 78999988643  46999999999999999999999998  999999999999999999999999998765322  


Q ss_pred             ------hhhcccccccCCCCC-CcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          531 ------EMAATSKKLSSAPSA-SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       531 ------~~~~~~pe~~~~~~~-s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                            ...+.+||...+..+ +.++|||||||++|||+||+.||.....             ......+.......+..
T Consensus       164 ~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~-------------~~~~~~i~~~~~~~p~~  230 (336)
T 3h4j_B          164 LKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFI-------------PNLFKKVNSCVYVMPDF  230 (336)
T ss_dssp             TCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSS-------------TTCBCCCCSSCCCCCTT
T ss_pred             cccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccH-------------HHHHHHHHcCCCCCccc
Confidence                  234567887766554 6899999999999999999999953221             01111111111223333


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      .+..+.+++.+||+.||++|||+.|+++.
T Consensus       231 ~s~~~~~li~~~L~~dP~~Rpt~~eil~h  259 (336)
T 3h4j_B          231 LSPGAQSLIRRMIVADPMQRITIQEIRRD  259 (336)
T ss_dssp             SCHHHHHHHHTTSCSSGGGSCCHHHHTTC
T ss_pred             CCHHHHHHHHHHcCCChhHCcCHHHHHhC
Confidence            44678899999999999999999999763

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=2.9e-37  Score=329.39  Aligned_cols=237  Identities=18%  Similarity=0.281  Sum_probs=186.6

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      +.||+|+||.||+|+.. +|..||+|++....     ....++|.+|++++++++||||+++++++.+.+  ..++||||
T Consensus        95 ~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~--~~~lv~E~  167 (373)
T 2x4f_A           95 EILGGGRFGQVHKCEETATGLKLAAKIIKTRG-----MKDKEEVKNEISVMNQLDHANLIQLYDAFESKN--DIVLVMEY  167 (373)
T ss_dssp             EECC-----CEEEEEETTTCCEEEEEEEECCS-----HHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--EEEEEEEC
T ss_pred             eEEecCcCEEEEEEEEcCCCcEEEEEEEcccc-----cccHHHHHHHHHHHHhCCCCCCCeEEEEEEECC--EEEEEEeC
Confidence            67999999999999964 68999999987532     234568999999999999999999999998877  77999999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEe--cCCCceEecccCchhhhhhh--
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL--TEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILl--d~~~~~kl~DfGla~~~~~~--  530 (664)
                      +++|+|.+++.. ....+++..+..++.+++.||+|||+.+  |+||||||+|||+  +.++.+||+|||+++.....  
T Consensus       168 ~~~~~L~~~l~~-~~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~  244 (373)
T 2x4f_A          168 VDGGELFDRIID-ESYNLTELDTILFMKQICEGIRHMHQMY--ILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREK  244 (373)
T ss_dssp             CTTCEEHHHHHH-TGGGCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCB
T ss_pred             CCCCcHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHCC--cccccCCHHHEEEecCCCCcEEEEeCCCceecCCccc
Confidence            999999998863 3456899999999999999999999998  9999999999999  56789999999998865322  


Q ss_pred             ------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          531 ------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       531 ------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                            ...+.+||......++.++|||||||++|||+||+.||..  ....+.............   .....    ..
T Consensus       245 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~--~~~~~~~~~i~~~~~~~~---~~~~~----~~  315 (373)
T 2x4f_A          245 LKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLG--DNDAETLNNILACRWDLE---DEEFQ----DI  315 (373)
T ss_dssp             CCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHHTCCCSC---SGGGT----TS
T ss_pred             cccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHHhccCCCC---hhhhc----cC
Confidence                  2345678877777889999999999999999999999943  233333333333211111   11111    22


Q ss_pred             HHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          605 LETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ..++.+++.+||+.||++||++.|+++
T Consensus       316 ~~~~~~li~~~L~~dp~~Rps~~e~l~  342 (373)
T 2x4f_A          316 SEEAKEFISKLLIKEKSWRISASEALK  342 (373)
T ss_dssp             CHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             CHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            356889999999999999999999987

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.6e-37  Score=317.69  Aligned_cols=242  Identities=19%  Similarity=0.275  Sum_probs=195.4

Q ss_pred             cccccCCCeEEEEEEEC---CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          376 NVIGSSPIGTVYKGTLS---NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~---~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.||+|+||.||+|.+.   ++..||||.+....    .....+++.+|++++++++||||+++++++.. +  ..++||
T Consensus        16 ~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~--~~~lv~   88 (287)
T 1u59_A           16 IELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT----EKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-E--ALMLVM   88 (287)
T ss_dssp             EEEECCTTEEEEEEEEC---CCEEEEEEEECSSC----CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-S--SEEEEE
T ss_pred             ccccccCceeEEEeEeccCCCcceEEEEecCCcc----chhHHHHHHHHHHHHHhCCCCCEeEEEEEecC-C--CcEEEE
Confidence            48999999999999864   57889999986432    23456789999999999999999999999943 3  468999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++|+|.+++.. ....+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++.....  
T Consensus        89 e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~  165 (287)
T 1u59_A           89 EMAGGGPLHKFLVG-KREEIPVSNVAELLHQVSMGMKYLEEKN--FVHRDLAARNVLLVNRHYAKISDFGLSKALGADDS  165 (287)
T ss_dssp             ECCTTEEHHHHHTT-CTTTSCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEEETTEEEECCCTTCEECTTCSC
T ss_pred             EeCCCCCHHHHHHh-CCccCCHHHHHHHHHHHHHHHHHHHHCC--EeeCCCchheEEEcCCCCEEECcccceeeeccCcc
Confidence            99999999999863 3456999999999999999999999998  999999999999999999999999998765321  


Q ss_pred             ----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 006019          531 ----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  599 (664)
Q Consensus       531 ----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  599 (664)
                                ...+.+||......++.++||||||+++|||+| |+.||....  ..+.......+.          ...
T Consensus       166 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~--~~~~~~~i~~~~----------~~~  233 (287)
T 1u59_A          166 YYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK--GPEVMAFIEQGK----------RME  233 (287)
T ss_dssp             EECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC--THHHHHHHHTTC----------CCC
T ss_pred             eeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCC--HHHHHHHHhcCC----------cCC
Confidence                      133556776666667889999999999999999 999994322  233332222221          011


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          600 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       600 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                      .+...+..+.+++.+||+.||++||++.++++.|+++...
T Consensus       234 ~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~  273 (287)
T 1u59_A          234 CPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYS  273 (287)
T ss_dssp             CCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence            2233446799999999999999999999999999998654

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=9e-38  Score=323.33  Aligned_cols=249  Identities=18%  Similarity=0.256  Sum_probs=192.0

Q ss_pred             hhcccccCCCeEEEEEEE-----CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          374 FSNVIGSSPIGTVYKGTL-----SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-----~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      +.+.||+|+||.||+|++     .+++.||+|++......    ...+.+.+|++++++++||||+++++++...+....
T Consensus        25 ~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~  100 (302)
T 4e5w_A           25 RIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGG----NHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI  100 (302)
T ss_dssp             EEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC---------CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred             hhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccc----hhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence            457899999999999994     36889999998654322    234679999999999999999999999987643367


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++||||+++|+|.+++... ...+++..+..++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||+++...
T Consensus       101 ~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~  177 (302)
T 4e5w_A          101 KLIMEFLPSGSLKEYLPKN-KNKINLKQQLKYAVQICKGMDYLGSRQ--YVHRDLAARNVLVESEHQVKIGDFGLTKAIE  177 (302)
T ss_dssp             EEEEECCTTCBHHHHHHHH-TTTCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEEETTEEEECCCTTCEECC
T ss_pred             EEEEEeCCCCcHHHHHHhc-cccCCHHHHHHHHHHHHHHHHHhhcCC--cccCCCchheEEEcCCCCEEECccccccccc
Confidence            9999999999999998533 356999999999999999999999998  9999999999999999999999999987653


Q ss_pred             hh------------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCC------------CChHHHHHHHhc
Q 006019          529 MA------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDN------------GSLEDWAADYLS  584 (664)
Q Consensus       529 ~~------------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~------------~~~~~~~~~~~~  584 (664)
                      ..            ...+.+||......++.++||||||+++|||+||+.|+....            ............
T Consensus       178 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (302)
T 4e5w_A          178 TDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLK  257 (302)
T ss_dssp             TTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHHHH
T ss_pred             CCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHHHh
Confidence            22            122556776666667889999999999999999999863110            000001111111


Q ss_pred             CCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          585 GVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       585 ~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      .         ......+...+..+.+++.+||+.||++||++.++++.|+++++
T Consensus       258 ~---------~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll~  302 (302)
T 4e5w_A          258 E---------GKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALLK  302 (302)
T ss_dssp             T---------TCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHC
T ss_pred             c---------cCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhC
Confidence            1         11112233344678999999999999999999999999998864

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=4e-37  Score=324.82  Aligned_cols=246  Identities=15%  Similarity=0.186  Sum_probs=189.2

Q ss_pred             hhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      .+.+.||+|+||.||+|+.. ++..+|+|++.............+.+.+|++++++++||||+++++++.+.+  ..++|
T Consensus        29 ~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~--~~~lv  106 (345)
T 3hko_A           29 HLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQ--YICLV  106 (345)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EEEEE
T ss_pred             eecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCC--eEEEE
Confidence            34589999999999999974 6789999998754332222344578999999999999999999999998876  67999


Q ss_pred             EEecCCCChhhhhccc--------------------------------------CCCCCCHHHHHHHHHHHHHHHHHhhc
Q 006019          452 FEYAPNGTLFEHIHIK--------------------------------------ESEHLDWGMRLRIAMGMAYCLEHMHQ  493 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~--------------------------------------~~~~l~~~~~~~ia~~ia~gL~yLH~  493 (664)
                      |||+++|+|.+++...                                      ....+++.....|+.+++.||+|||+
T Consensus       107 ~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~  186 (345)
T 3hko_A          107 MELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHN  186 (345)
T ss_dssp             EECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988521                                      01123567788899999999999999


Q ss_pred             CCCCeEEeCcCCCCeEecCCC--ceEecccCchhhhhh-------------hhhhcccccccCC--CCCCcCCcchhhHH
Q 006019          494 LNPPIAHNYLNSSAVHLTEDY--AAKLSDLSFWNEIAM-------------AEMAATSKKLSSA--PSASLESNVYNFGV  556 (664)
Q Consensus       494 ~~~~ivHrDLk~~NILld~~~--~~kl~DfGla~~~~~-------------~~~~~~~pe~~~~--~~~s~ksDVySfGv  556 (664)
                      .+  |+||||||+|||++.++  .+||+|||+++....             ....+.+||....  ..++.++|||||||
T Consensus       187 ~~--ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~  264 (345)
T 3hko_A          187 QG--ICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGV  264 (345)
T ss_dssp             TT--EECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHHHHHHHH
T ss_pred             CC--ccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHHHHHHHH
Confidence            98  99999999999998776  899999999875422             1234567776643  66889999999999


Q ss_pred             HHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          557 LLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       557 vl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ++|||+||+.||..  ....+.............   .+.    .......+.+++.+||+.||++||++.++++
T Consensus       265 il~el~~g~~pf~~--~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~  330 (345)
T 3hko_A          265 LLHLLLMGAVPFPG--VNDADTISQVLNKKLCFE---NPN----YNVLSPLARDLLSNLLNRNVDERFDAMRALQ  330 (345)
T ss_dssp             HHHHHHHSSCSSCC--SSHHHHHHHHHHCCCCTT---SGG----GGGSCHHHHHHHHHHSCSCTTTSCCHHHHHH
T ss_pred             HHHHHHHCCCCCCC--CChHHHHHHHHhcccccC---Ccc----cccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence            99999999999942  233333334333321111   111    1123356889999999999999999999976

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=3.6e-37  Score=327.39  Aligned_cols=243  Identities=20%  Similarity=0.256  Sum_probs=194.2

Q ss_pred             hhhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEE
Q 006019          372 EDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  450 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~l  450 (664)
                      +.+.+.||+|+||.||+|... ++..||+|++.....   .....+.+.+|++++++++|||||++++++.+.+  ..++
T Consensus        31 y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~---~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~--~~~l  105 (362)
T 2bdw_A           31 YDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKL---SARDFQKLEREARICRKLQHPNIVRLHDSIQEES--FHYL  105 (362)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC---CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EEEE
T ss_pred             eEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccC---CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCC--EEEE
Confidence            345589999999999999975 589999999875432   2334567999999999999999999999998877  6799


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC---ceEecccCchhhh
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY---AAKLSDLSFWNEI  527 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~---~~kl~DfGla~~~  527 (664)
                      ||||+++|+|.+++..  ...+++..+..++.+++.||+|||+.+  |+||||||+|||++.++   .+||+|||+++..
T Consensus       106 v~e~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~al~~lH~~~--ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~  181 (362)
T 2bdw_A          106 VFDLVTGGELFEDIVA--REFYSEADASHCIQQILESIAYCHSNG--IVHRNLKPENLLLASKAKGAAVKLADFGLAIEV  181 (362)
T ss_dssp             EECCCCSCBHHHHHTT--CSCCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCSGGGEEESCSSTTCCEEECCCTTCBCC
T ss_pred             EEecCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEeccCchHHEEEecCCCCCCEEEeecCcceEe
Confidence            9999999999998863  456899999999999999999999998  99999999999998654   5999999998765


Q ss_pred             hhh--------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 006019          528 AMA--------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  599 (664)
Q Consensus       528 ~~~--------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  599 (664)
                      ...        ...+.+||......++.++|||||||++|||+||+.||..  .+..+.......+.....   .+.   
T Consensus       182 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~--~~~~~~~~~i~~~~~~~~---~~~---  253 (362)
T 2bdw_A          182 NDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWD--EDQHRLYAQIKAGAYDYP---SPE---  253 (362)
T ss_dssp             TTCCSCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHTCCCCC---TTG---
T ss_pred             cCCcccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHhCCCCCC---ccc---
Confidence            422        2345678887777889999999999999999999999943  233333333333211111   111   


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          600 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       600 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                       ....+.++.+++.+||+.||++||++.++++.
T Consensus       254 -~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  285 (362)
T 2bdw_A          254 -WDTVTPEAKSLIDSMLTVNPKKRITADQALKV  285 (362)
T ss_dssp             -GGGSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             -ccCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence             11233568899999999999999999998753

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.8e-38  Score=329.58  Aligned_cols=244  Identities=17%  Similarity=0.285  Sum_probs=188.7

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEE----EEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEI----AVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~v----avk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      +.+.||+|+||.||+|+.. ++..+    ++|.+....    .....+.+.+|++++++++||||+++++++....   .
T Consensus        19 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~----~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~---~   91 (327)
T 3lzb_A           19 KIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT----SPKANKEILDEAYVMASVDNPHVCRLLGICLTST---V   91 (327)
T ss_dssp             EEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCS----SCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS---E
T ss_pred             EEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeecccc----CHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC---c
Confidence            3478999999999999964 45544    555554222    1234578999999999999999999999998754   5


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++|+||+++|+|.+++.. ....+++..+..|+.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...
T Consensus        92 ~~v~~~~~~g~L~~~l~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~  168 (327)
T 3lzb_A           92 QLITQLMPFGCLLDYVRE-HKDNIGSQYLLNWCVQIAKGMNYLEDRR--LVHRDLAARNVLVKTPQHVKITDFGLAKLLG  168 (327)
T ss_dssp             EEEECCCSSCBHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEEETTEEEECCTTC-----
T ss_pred             eEEEEecCCCcHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHhhCC--CcCCCCCHHHEEEcCCCCEEEccCcceeEcc
Confidence            799999999999999864 3456999999999999999999999998  9999999999999999999999999998653


Q ss_pred             hh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCC
Q 006019          529 MA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  596 (664)
Q Consensus       529 ~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  596 (664)
                      ..           ...+.+||......++.++|||||||++|||+| |+.||....  ..+........ ..        
T Consensus       169 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~--~~~~~~~~~~~-~~--------  237 (327)
T 3lzb_A          169 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP--ASEISSILEKG-ER--------  237 (327)
T ss_dssp             -----------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--GGGHHHHHHTT-CC--------
T ss_pred             CccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCC--HHHHHHHHHcC-CC--------
Confidence            21           123567777767778999999999999999999 999995322  22222221111 10        


Q ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          597 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       597 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                       ...+...+..+.+++.+||+.||++||++.|+++.|+++...
T Consensus       238 -~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~  279 (327)
T 3lzb_A          238 -LPQPPICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMARD  279 (327)
T ss_dssp             -CCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHTS
T ss_pred             -CCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhC
Confidence             111223345688999999999999999999999999998753

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=4.3e-38  Score=328.58  Aligned_cols=248  Identities=19%  Similarity=0.271  Sum_probs=196.1

Q ss_pred             hhcccccCCCeEEEEEEEC-----CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          374 FSNVIGSSPIGTVYKGTLS-----NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-----~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      +.+.||+|+||.||++.+.     +++.||||++....    .....+.|.+|++++++++||||+++++++.+.+....
T Consensus        35 ~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~  110 (318)
T 3lxp_A           35 KIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADA----GPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASL  110 (318)
T ss_dssp             EEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTC----CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEE
T ss_pred             hhheecCCCCeEEEEEEEccCCCCCCcEEEEEEecccc----ChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceE
Confidence            4578999999999998763     67899999986432    23446779999999999999999999999987544467


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++||||+++|+|.+++...   .+++..+..++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||+++...
T Consensus       111 ~lv~e~~~~~~L~~~l~~~---~~~~~~~~~i~~~l~~~l~~LH~~~--ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~  185 (318)
T 3lxp_A          111 QLVMEYVPLGSLRDYLPRH---SIGLAQLLLFAQQICEGMAYLHAQH--YIHRDLAARNVLLDNDRLVKIGDFGLAKAVP  185 (318)
T ss_dssp             EEEECCCTTCBHHHHGGGS---CCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECTTCCEEECCGGGCEECC
T ss_pred             EEEEecccCCcHHHHHhhC---CCCHHHHHHHHHHHHHHHHHHHhCC--ccCCCCchheEEEcCCCCEEECCcccccccc
Confidence            9999999999999998643   4899999999999999999999999  9999999999999999999999999987653


Q ss_pred             hh------------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChH--------H----HHHHHhc
Q 006019          529 MA------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLE--------D----WAADYLS  584 (664)
Q Consensus       529 ~~------------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~--------~----~~~~~~~  584 (664)
                      ..            ...+.+||......++.++||||||+++|||+||+.||........        .    .....+.
T Consensus       186 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (318)
T 3lxp_A          186 EGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLE  265 (318)
T ss_dssp             TTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred             ccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHHh
Confidence            22            1225567766666778899999999999999999999842110000        0    0011111


Q ss_pred             CCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          585 GVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       585 ~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                      .         ......+..++.++.+++.+||+.||++||++.++++.|+++.+.
T Consensus       266 ~---------~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~  311 (318)
T 3lxp_A          266 R---------GERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEK  311 (318)
T ss_dssp             T---------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             c---------ccCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHh
Confidence            1         111122334446799999999999999999999999999998654

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=2.5e-37  Score=318.52  Aligned_cols=240  Identities=22%  Similarity=0.302  Sum_probs=191.2

Q ss_pred             ccccCCCeEEEEEEEC---CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          377 VIGSSPIGTVYKGTLS---NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       377 ~iG~G~~G~Vy~g~~~---~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .||+|+||.||+|.+.   ++..||||++......   ....++|.+|++++++++||||+++++++.. +  ..++|||
T Consensus        24 ~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~--~~~lv~e   97 (291)
T 1xbb_A           24 ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEAND---PALKDELLAEANVMQQLDNPYIVRMIGICEA-E--SWMLVME   97 (291)
T ss_dssp             EEEECSSEEEEEEEEECSSSEEEEEEEEEC--------CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES-S--SEEEEEE
T ss_pred             ccccccCeeeEeeeecCCCceeeEEEEeecccccC---HHHHHHHHHHHHHHHhCCCCCEEEEEEEECC-C--CcEEEEE
Confidence            8999999999999652   4678999998654321   2345789999999999999999999999943 3  5689999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      |+++|+|.+++..  ...+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++.....   
T Consensus        98 ~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~LH~~~--i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~  173 (291)
T 1xbb_A           98 MAELGPLNKYLQQ--NRHVKDKNIIELVHQVSMGMKYLEESN--FVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY  173 (291)
T ss_dssp             CCTTEEHHHHHHH--CTTCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSE
T ss_pred             eCCCCCHHHHHHh--CcCCCHHHHHHHHHHHHHHHHHHHhCC--eEcCCCCcceEEEeCCCcEEEccCCcceeeccCCCc
Confidence            9999999999964  346899999999999999999999998  999999999999999999999999998765321   


Q ss_pred             ---------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 006019          531 ---------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  600 (664)
Q Consensus       531 ---------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  600 (664)
                               ...+.+||......++.++||||||+++|||+| |+.||..  ....+........ ..         ...
T Consensus       174 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~--~~~~~~~~~~~~~-~~---------~~~  241 (291)
T 1xbb_A          174 YKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRG--MKGSEVTAMLEKG-ER---------MGC  241 (291)
T ss_dssp             EEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTT--CCHHHHHHHHHTT-CC---------CCC
T ss_pred             ccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCC--CCHHHHHHHHHcC-CC---------CCC
Confidence                     123556776666667889999999999999999 9999943  2223332222221 10         112


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          601 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       601 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      +...+..+.+++.+||+.||++||++.++++.|+++..
T Consensus       242 ~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~  279 (291)
T 1xbb_A          242 PAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYY  279 (291)
T ss_dssp             CTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence            23334678999999999999999999999999999864

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=3.3e-38  Score=331.52  Aligned_cols=247  Identities=20%  Similarity=0.327  Sum_probs=194.9

Q ss_pred             hhhcccccCCCeEEEEEEECC-C-----cEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCC
Q 006019          373 DFSNVIGSSPIGTVYKGTLSN-G-----VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEP  445 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~~-~-----~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~  445 (664)
                      .+.+.||+|+||.||+|.... +     ..||+|.+....    .....+.+.+|+++++++ +||||+++++++.+.+ 
T Consensus        49 ~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~-  123 (333)
T 2i1m_A           49 QFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTA----HADEKEALMSELKIMSHLGQHENIVNLLGACTHGG-  123 (333)
T ss_dssp             EEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-
T ss_pred             eeeeEeccCCCcceEEEEecCCCcccchhHHHHHhccccc----ChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCC-
Confidence            445899999999999999643 2     479999885432    133457799999999999 8999999999998877 


Q ss_pred             ceeEEEEEecCCCChhhhhcccC------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCC
Q 006019          446 FTRMMVFEYAPNGTLFEHIHIKE------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED  513 (664)
Q Consensus       446 ~~~~lV~Ey~~~GsL~~~l~~~~------------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~  513 (664)
                       ..++||||+++|+|.+++....            ...+++..+..++.+++.||+|||+.+  |+||||||+|||++.+
T Consensus       124 -~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~Dlkp~NIl~~~~  200 (333)
T 2i1m_A          124 -PVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKN--CIHRDVAARNVLLTNG  200 (333)
T ss_dssp             -SCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGCEEEGG
T ss_pred             -ceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCC--cccCCcccceEEECCC
Confidence             5699999999999999986421            345899999999999999999999998  9999999999999999


Q ss_pred             CceEecccCchhhhhhhh-----------hhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHH
Q 006019          514 YAAKLSDLSFWNEIAMAE-----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAAD  581 (664)
Q Consensus       514 ~~~kl~DfGla~~~~~~~-----------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~  581 (664)
                      +.+||+|||+++......           ..+.+||......++.++|||||||++|||+| |+.||......  .....
T Consensus       201 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~--~~~~~  278 (333)
T 2i1m_A          201 HVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVN--SKFYK  278 (333)
T ss_dssp             GEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSS--HHHHH
T ss_pred             CeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchh--HHHHH
Confidence            999999999998653221           23567777666778999999999999999999 99999543222  11222


Q ss_pred             HhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          582 YLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       582 ~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      ........         ..+...+..+.+++.+||+.||++||++.++++.|+++..
T Consensus       279 ~~~~~~~~---------~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~  326 (333)
T 2i1m_A          279 LVKDGYQM---------AQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQAQ  326 (333)
T ss_dssp             HHHHTCCC---------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHhcCCCC---------CCCCCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHHHH
Confidence            22111100         0111223568899999999999999999999999998764

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=3.2e-37  Score=331.38  Aligned_cols=248  Identities=15%  Similarity=0.250  Sum_probs=191.8

Q ss_pred             hhcccccC--CCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEE
Q 006019          374 FSNVIGSS--PIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  450 (664)
Q Consensus       374 ~~~~iG~G--~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~l  450 (664)
                      +.+.||+|  +||.||+|+.. +++.||||++......   ....+.+.+|++++++++|||||++++++.+.+  ..++
T Consensus        29 ~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~--~~~l  103 (389)
T 3gni_B           29 LLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACS---NEMVTFLQGELHVSKLFNHPNIVPYRATFIADN--ELWV  103 (389)
T ss_dssp             EEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSC---HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT--EEEE
T ss_pred             EEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccC---hHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECC--EEEE
Confidence            45889999  99999999976 6899999999764432   345577899999999999999999999999877  7799


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh--
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA--  528 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~--  528 (664)
                      |||||++|+|.+++.......+++..+..|+.+++.||+|||+.+  |+||||||+|||++.++.+||+|||.+....  
T Consensus       104 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~--ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~~  181 (389)
T 3gni_B          104 VTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMG--YVHRSVKASHILISVDGKVYLSGLRSNLSMISH  181 (389)
T ss_dssp             EEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTCCEEECCGGGCEECEET
T ss_pred             EEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEcCCCCEEEcccccceeeccc
Confidence            999999999999997655567999999999999999999999999  9999999999999999999999999875431  


Q ss_pred             --------------hhhhhcccccccCC--CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccc
Q 006019          529 --------------MAEMAATSKKLSSA--PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQF  592 (664)
Q Consensus       529 --------------~~~~~~~~pe~~~~--~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~  592 (664)
                                    .....+.+||....  ..++.++|||||||++|||+||+.||.......  .......+.  ...+
T Consensus       182 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~--~~~~~~~~~--~~~~  257 (389)
T 3gni_B          182 GQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQ--MLLEKLNGT--VPCL  257 (389)
T ss_dssp             TEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTT--HHHHC----------
T ss_pred             cccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHH--HHHHHhcCC--CCcc
Confidence                          12233567887665  568899999999999999999999995322111  111111000  0000


Q ss_pred             cC-------------------------------------CCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          593 VD-------------------------------------PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       593 ~d-------------------------------------~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      .+                                     ......+......+.+++.+||+.||++|||+.|+++.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~h  334 (389)
T 3gni_B          258 LDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNH  334 (389)
T ss_dssp             ------------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred             ccccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhcC
Confidence            00                                     00001122334568999999999999999999999854

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=1.3e-37  Score=321.33  Aligned_cols=247  Identities=12%  Similarity=0.128  Sum_probs=195.0

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.+.||+|+||.||+|+. .+++.||||++.....       .+.+.+|+++++++ +|+|++++++++....  ..++|
T Consensus        14 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-------~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~--~~~lv   84 (298)
T 1csn_A           14 VGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD-------APQLRDEYRTYKLLAGCTGIPNVYYFGQEGL--HNVLV   84 (298)
T ss_dssp             EEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT-------SCCHHHHHHHHHHTTTCTTCCCEEEEEEETT--EEEEE
T ss_pred             EEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCc-------cHHHHHHHHHHHHHhcCCCCCeEEeecCCCc--eeEEE
Confidence            447899999999999995 5789999998864332       23578899999999 7999999999998777  67999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCc-----eEecccCchhh
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA-----AKLSDLSFWNE  526 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~-----~kl~DfGla~~  526 (664)
                      |||+ +|+|.+++... ...+++..+..|+.+++.||+|||+.+  |+||||||+|||++.++.     +||+|||+++.
T Consensus        85 ~e~~-~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~--ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~  160 (298)
T 1csn_A           85 IDLL-GPSLEDLLDLC-GRKFSVKTVAMAAKQMLARVQSIHEKS--LVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKF  160 (298)
T ss_dssp             EECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHTTT--EECCCCCGGGEEECCSSSTTTTCEEECCCTTCEE
T ss_pred             EEec-CCCHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHhCC--EecCCCCHHHEEeccCCCCCCCeEEEEECccccc
Confidence            9999 99999999643 446999999999999999999999998  999999999999987776     99999999876


Q ss_pred             hhhh----------------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCC-ChHHHHHHHhcCCCCC
Q 006019          527 IAMA----------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG-SLEDWAADYLSGVQPL  589 (664)
Q Consensus       527 ~~~~----------------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~-~~~~~~~~~~~~~~~~  589 (664)
                      ....                ...+.+||......++.++|||||||++|||+||+.||..... ...+............
T Consensus       161 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~  240 (298)
T 1csn_A          161 YRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQST  240 (298)
T ss_dssp             SBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHS
T ss_pred             cccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccCc
Confidence            5321                2345678877777889999999999999999999999964332 2222222211110000


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          590 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       590 ~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                            .........+..+.+++.+||+.||++||++++|++.|+++.+.
T Consensus       241 ------~~~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~  284 (298)
T 1csn_A          241 ------PLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLER  284 (298)
T ss_dssp             ------CHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             ------cHHHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHh
Confidence                  00000112235789999999999999999999999999999764

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=1.5e-37  Score=319.72  Aligned_cols=247  Identities=17%  Similarity=0.237  Sum_probs=188.9

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.+.||+|+||.||+|+..++..+|+|++......   ....+.+.+|++++++++||||+++++++...+  ..++|||
T Consensus         6 ~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~e   80 (288)
T 1ob3_A            6 GLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKED---EGIPSTTIREISILKELKHSNIVKLYDVIHTKK--RLVLVFE   80 (288)
T ss_dssp             EEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGG---GCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSS--CEEEEEE
T ss_pred             hhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccc---cccchhHHHHHHHHHhcCCCCEeeeeeEEccCC--eEEEEEE
Confidence            34789999999999999988999999998654322   122367889999999999999999999998876  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      |+++ +|.+++.. ....+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....   
T Consensus        81 ~~~~-~l~~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~  156 (288)
T 1ob3_A           81 HLDQ-DLKKLLDV-CEGGLESVTAKSFLLQLLNGIAYCHDRR--VLHRDLKPQNLLINREGELKIADFGLARAFGIPVRK  156 (288)
T ss_dssp             CCSE-EHHHHHHT-STTCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEECTTSCEEECCTTHHHHHCC----
T ss_pred             ecCC-CHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEEcCCCCEEEeECccccccCccccc
Confidence            9985 99888863 3356899999999999999999999998  999999999999999999999999998865321   


Q ss_pred             ------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhc---CC--CCCcc-----cc
Q 006019          531 ------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLS---GV--QPLQQ-----FV  593 (664)
Q Consensus       531 ------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~---~~--~~~~~-----~~  593 (664)
                            ...+.+||.... ..++.++|||||||++|||+||+.||...  ...+.......   ..  .....     ..
T Consensus       157 ~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (288)
T 1ob3_A          157 YTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGV--SEADQLMRIFRILGTPNSKNWPNVTELPKY  234 (288)
T ss_dssp             -----CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCTTTSTTGGGSTTC
T ss_pred             cccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHHCCCChhhchhhhccccc
Confidence                  233567776654 45899999999999999999999999532  22222222111   00  00000     01


Q ss_pred             CCCCC--------CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          594 DPTLS--------SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       594 d~~~~--------~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ++...        ........++.+++.+||+.||++|||+.|+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  280 (288)
T 1ob3_A          235 DPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE  280 (288)
T ss_dssp             CTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             ccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence            11110        111223467889999999999999999999875

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.7e-37  Score=320.44  Aligned_cols=251  Identities=22%  Similarity=0.298  Sum_probs=195.4

Q ss_pred             hcccccCCCeEEEEEEECC-C---cEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEE
Q 006019          375 SNVIGSSPIGTVYKGTLSN-G---VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  450 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~~-~---~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~l  450 (664)
                      .+.||+|+||.||+|++.+ +   ..+|+|.+....    .....+.|.+|++++++++||||+++++++.+.+. ..++
T Consensus        26 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~----~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~-~~~~  100 (298)
T 3pls_A           26 DRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRIT----EMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEG-LPHV  100 (298)
T ss_dssp             EEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCC----SHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSS-CCEE
T ss_pred             CceeccCCCceEEEEEEecCCCceeeeeeeeccccc----cHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCC-CcEE
Confidence            3789999999999998532 2   368888875321    23445789999999999999999999999976552 3489


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  530 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~  530 (664)
                      |+||+.+|+|.+++.. ....+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++.....
T Consensus       101 v~e~~~~~~L~~~~~~-~~~~~~~~~~~~i~~qi~~~l~~LH~~~--i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~  177 (298)
T 3pls_A          101 LLPYMCHGDLLQFIRS-PQRNPTVKDLISFGLQVARGMEYLAEQK--FVHRDLAARNCMLDESFTVKVADFGLARDILDR  177 (298)
T ss_dssp             EECCCTTCBHHHHHHC-TTCCCBHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEECTTCCEEECCTTSSCTTTTG
T ss_pred             EEecccCCCHHHHHhc-cccCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCcceEEEcCCCcEEeCcCCCcccccCC
Confidence            9999999999999964 3467899999999999999999999998  999999999999999999999999999755322


Q ss_pred             -------------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 006019          531 -------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  597 (664)
Q Consensus       531 -------------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  597 (664)
                                   ...+.+||......++.++||||||+++|||+||+.|+... ....+......... .         
T Consensus       178 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~-~~~~~~~~~~~~~~-~---------  246 (298)
T 3pls_A          178 EYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRH-IDPFDLTHFLAQGR-R---------  246 (298)
T ss_dssp             GGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTT-SCGGGHHHHHHTTC-C---------
T ss_pred             cccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCcc-CCHHHHHHHhhcCC-C---------
Confidence                         22345677777778899999999999999999966664322 22222222222211 0         


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCCCCC
Q 006019          598 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGA  644 (664)
Q Consensus       598 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~~~~  644 (664)
                      ...+...+..+.+++.+||+.||++||++.++++.|+++........
T Consensus       247 ~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l~~~~  293 (298)
T 3pls_A          247 LPQPEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSALLGDH  293 (298)
T ss_dssp             CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHCCSCC
T ss_pred             CCCCccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHHhccc
Confidence            11122233568999999999999999999999999999987654433

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=1.5e-37  Score=324.89  Aligned_cols=246  Identities=20%  Similarity=0.325  Sum_probs=197.3

Q ss_pred             hhhcccccCCCeEEEEEEEC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCc
Q 006019          373 DFSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF  446 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  446 (664)
                      .+.+.||+|+||.||+|+..      ++..||+|.+....    .......|.+|++++++++||||+++++++.+.+  
T Consensus        28 ~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--  101 (322)
T 1p4o_A           28 TMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA----SMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQ--  101 (322)
T ss_dssp             EEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTS----CHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSS--
T ss_pred             eeeeEeccCCceEEEeeeecCccCCCCceEEEEEeccccc----CHHHHHHHHHHHHHHHhcCCCCEeeeEEEEccCC--
Confidence            34588999999999999864      36789999886322    1334567999999999999999999999998776  


Q ss_pred             eeEEEEEecCCCChhhhhcccC--------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEe
Q 006019          447 TRMMVFEYAPNGTLFEHIHIKE--------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKL  518 (664)
Q Consensus       447 ~~~lV~Ey~~~GsL~~~l~~~~--------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl  518 (664)
                      ..++||||+++|+|.++++...        ...+++..+.+++.+++.||+|||+.+  |+||||||+||+++.++.+||
T Consensus       102 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--i~H~dikp~NIli~~~~~~kl  179 (322)
T 1p4o_A          102 PTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANK--FVHRDLAARNCMVAEDFTVKI  179 (322)
T ss_dssp             SCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTT--CBCSCCSGGGEEECTTCCEEE
T ss_pred             ccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCC--CccCCCccceEEEcCCCeEEE
Confidence            5699999999999999986421        245789999999999999999999998  999999999999999999999


Q ss_pred             cccCchhhhhhhh-----------hhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCC
Q 006019          519 SDLSFWNEIAMAE-----------MAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGV  586 (664)
Q Consensus       519 ~DfGla~~~~~~~-----------~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~  586 (664)
                      +|||+++......           ..+.+||......++.++||||||+++|||+| |+.||..  ....+.........
T Consensus       180 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~--~~~~~~~~~~~~~~  257 (322)
T 1p4o_A          180 GDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQG--LSNEQVLRFVMEGG  257 (322)
T ss_dssp             CCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTT--SCHHHHHHHHHTTC
T ss_pred             CcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCcccc--CCHHHHHHHHHcCC
Confidence            9999987653221           23567777666778999999999999999999 8999842  33333333332221


Q ss_pred             CCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          587 QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       587 ~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                                ....+...+..+.+++.+||+.||++||++.|+++.|+++..
T Consensus       258 ----------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~  299 (322)
T 1p4o_A          258 ----------LLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEME  299 (322)
T ss_dssp             ----------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred             ----------cCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhc
Confidence                      111222334568999999999999999999999999998865

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=6.6e-37  Score=323.84  Aligned_cols=237  Identities=16%  Similarity=0.227  Sum_probs=180.6

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. +++.||||++....       ..+.+.+|++++++++||||+++++++...+  ..++||
T Consensus        57 ~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~-------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~--~~~lv~  127 (349)
T 2w4o_A           57 VESELGRGATSIVYRCKQKGTQKPYALKVLKKTV-------DKKIVRTEIGVLLRLSHPNIIKLKEIFETPT--EISLVL  127 (349)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEC-----------------CHHHHHCCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             EeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch-------hHHHHHHHHHHHHhCCCCCCcceeeeEecCC--eEEEEE
Confidence            3478999999999999976 57889999986432       2356889999999999999999999998876  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecC---CCceEecccCchhhhhh
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE---DYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~---~~~~kl~DfGla~~~~~  529 (664)
                      ||+++|+|.+++..  ...+++..+..++.+++.||+|||+.+  |+||||||+|||++.   ++.+||+|||+++....
T Consensus       128 e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~~L~~LH~~~--ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~  203 (349)
T 2w4o_A          128 ELVTGGELFDRIVE--KGYYSERDAADAVKQILEAVAYLHENG--IVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEH  203 (349)
T ss_dssp             CCCCSCBHHHHHTT--CSSCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEESSSSTTCCEEECCCC-------
T ss_pred             EeCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEecCCCcccEEEecCCCCCCEEEccCccccccCc
Confidence            99999999999863  456899999999999999999999998  999999999999975   88999999999886532


Q ss_pred             --------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 006019          530 --------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  601 (664)
Q Consensus       530 --------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  601 (664)
                              ....+.+||......++.++|||||||++|||+||+.||...... .............   ...+.    .
T Consensus       204 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~-~~~~~~i~~~~~~---~~~~~----~  275 (349)
T 2w4o_A          204 QVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGD-QFMFRRILNCEYY---FISPW----W  275 (349)
T ss_dssp             ---------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCH-HHHHHHHHTTCCC---CCTTT----T
T ss_pred             ccccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCccc-HHHHHHHHhCCCc---cCCch----h
Confidence                    233566788888888999999999999999999999999543322 2222233322111   11111    1


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          602 EEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       602 ~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ...+..+.+++.+||+.||++||++.|+++
T Consensus       276 ~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  305 (349)
T 2w4o_A          276 DEVSLNAKDLVRKLIVLDPKKRLTTFQALQ  305 (349)
T ss_dssp             TTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             hhCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            223356889999999999999999999876

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=6.7e-37  Score=333.32  Aligned_cols=241  Identities=18%  Similarity=0.248  Sum_probs=192.9

Q ss_pred             hhhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          373 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      .+.+.||+|+||.||+|.. .+|..+|+|++.....   .....+.+.+|++++++++|||||++++++.+.+  ..++|
T Consensus        14 ~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~---~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~--~~~lv   88 (444)
T 3soa_A           14 QLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKL---SARDHQKLEREARICRLLKHPNIVRLHDSISEEG--HHYLI   88 (444)
T ss_dssp             EEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSC---HHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSS--EEEEE
T ss_pred             EEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccC---CHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECC--EEEEE
Confidence            3458999999999999986 4689999999875432   2334567999999999999999999999998877  77999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEec---CCCceEecccCchhhhh
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT---EDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld---~~~~~kl~DfGla~~~~  528 (664)
                      |||+++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||++   .++.+||+|||+++...
T Consensus        89 ~E~~~gg~L~~~i~~--~~~~~e~~~~~i~~qil~aL~~lH~~g--ivHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~  164 (444)
T 3soa_A           89 FDLVTGGELFEDIVA--REYYSEADASHCIQQILEAVLHCHQMG--VVHRNLKPENLLLASKLKGAAVKLADFGLAIEVE  164 (444)
T ss_dssp             ECCCBCCBHHHHHHH--CSCCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCC
T ss_pred             EEeCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCCHHHEEEeccCCCCcEEEccCceeEEec
Confidence            999999999998864  356999999999999999999999998  99999999999999   45789999999997653


Q ss_pred             h---------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 006019          529 M---------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  599 (664)
Q Consensus       529 ~---------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  599 (664)
                      .         ....+.+||......++.++||||+||++|||++|+.||..  ....+.......+....   ..+....
T Consensus       165 ~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~--~~~~~~~~~i~~~~~~~---~~~~~~~  239 (444)
T 3soa_A          165 GEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWD--EDQHRLYQQIKAGAYDF---PSPEWDT  239 (444)
T ss_dssp             TTCCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCC--SSHHHHHHHHHHTCCCC---CTTTTTT
T ss_pred             CCCceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHhCCCCC---Ccccccc
Confidence            2         23456678888777889999999999999999999999943  33344444443332111   1111112


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          600 FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       600 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                          .+.++.+++.+||+.||++||++.|+++
T Consensus       240 ----~s~~~~~li~~~L~~dP~~Rpta~e~L~  267 (444)
T 3soa_A          240 ----VTPEAKDLINKMLTINPSKRITAAEALK  267 (444)
T ss_dssp             ----SCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             ----CCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence                2356889999999999999999999886

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=1.5e-37  Score=326.32  Aligned_cols=245  Identities=13%  Similarity=0.136  Sum_probs=194.3

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.+.||+|+||.||+|+. .+++.||||.+......       +.+.+|+++++++ +||||+++++++...+  ..++|
T Consensus        13 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-------~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~--~~~lv   83 (330)
T 2izr_A           13 VGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRA-------PQLHLEYRFYKQLGSGDGIPQVYYFGPCGK--YNAMV   83 (330)
T ss_dssp             EEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCSS-------CCHHHHHHHHHHHCSCTTSCCEEEEEEETT--EEEEE
T ss_pred             EEEEeeccCCceEEEEEECCCCcEEEEEEeccccch-------HHHHHHHHHHHHhhCCCCCCEEEEEEecCC--ccEEE
Confidence            347899999999999996 57899999988644321       3588999999999 9999999999998876  67999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCc-----eEecccCchhh
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA-----AKLSDLSFWNE  526 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~-----~kl~DfGla~~  526 (664)
                      |||+ +|+|.+++... ...+++..+..|+.+++.||+|||+.+  |+||||||+|||++.++.     +||+|||+++.
T Consensus        84 ~e~~-~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~~--iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~  159 (330)
T 2izr_A           84 LELL-GPSLEDLFDLC-DRTFSLKTVLMIAIQLISRMEYVHSKN--LIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKE  159 (330)
T ss_dssp             EECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECCGGGTCTTSEEECCCTTCEE
T ss_pred             EEeC-CCCHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHhCC--eeccCCCHHHeeeccCCCCCCceEEEEEccccee
Confidence            9999 99999998643 457999999999999999999999998  999999999999999887     99999999986


Q ss_pred             hhhh----------------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCC-CChHHHHHHHhcCCCCC
Q 006019          527 IAMA----------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDN-GSLEDWAADYLSGVQPL  589 (664)
Q Consensus       527 ~~~~----------------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~-~~~~~~~~~~~~~~~~~  589 (664)
                      ....                ...+.+||......++.++|||||||++|||+||+.||.... ....+............
T Consensus       160 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~  239 (330)
T 2izr_A          160 YIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRAT  239 (330)
T ss_dssp             SBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHHHHHS
T ss_pred             eecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhhhccC
Confidence            5321                234557787777888999999999999999999999996433 23333322221110000


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          590 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       590 ~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      ..      .......+ ++.+++.+||+.||.+||++.+|++.|+++..
T Consensus       240 ~~------~~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~  281 (330)
T 2izr_A          240 PI------EVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFD  281 (330)
T ss_dssp             CH------HHHTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHH
T ss_pred             CH------HHHhccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence            00      00011123 78999999999999999999999999998864

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=3.5e-37  Score=331.76  Aligned_cols=260  Identities=18%  Similarity=0.249  Sum_probs=201.6

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. +++.||||++......    ...+.+.+|++++++++||||+++++++...+....++||
T Consensus        13 i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~----~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~   88 (396)
T 4eut_A           13 LSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFL----RPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM   88 (396)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGG----SCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred             EEEEEEcCCCeEEEEEEECCCCcEEEEEEecccccc----chHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEE
Confidence            4578999999999999976 4899999998643322    2246788999999999999999999999876544579999


Q ss_pred             EecCCCChhhhhcccC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEe----cCCCceEecccCchhhh
Q 006019          453 EYAPNGTLFEHIHIKE-SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL----TEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~-~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILl----d~~~~~kl~DfGla~~~  527 (664)
                      ||+++|+|.+++.... ...+++..+..++.+++.||+|||+.+  |+||||||+|||+    +.++.+||+|||+++..
T Consensus        89 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~  166 (396)
T 4eut_A           89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENG--IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAREL  166 (396)
T ss_dssp             CCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEEEECTTSCEEEEECCGGGCEEC
T ss_pred             ecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHCC--EEECCcCHHHEEEeecCCCceeEEEecCCCceEc
Confidence            9999999999997432 234999999999999999999999999  9999999999999    88889999999999765


Q ss_pred             hhhh--------hhcccccccCC--------CCCCcCCcchhhHHHHHHHHhCCCCccCCC--CChHHHHHHHhcCCCC-
Q 006019          528 AMAE--------MAATSKKLSSA--------PSASLESNVYNFGVLLFEMVTGRLPYLVDN--GSLEDWAADYLSGVQP-  588 (664)
Q Consensus       528 ~~~~--------~~~~~pe~~~~--------~~~s~ksDVySfGvvl~El~tG~~P~~~~~--~~~~~~~~~~~~~~~~-  588 (664)
                      ....        ..+.+||....        ..++.++|||||||++|||+||+.||....  ....+.......+... 
T Consensus       167 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~p~~  246 (396)
T 4eut_A          167 EDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSG  246 (396)
T ss_dssp             CCGGGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHSCCTT
T ss_pred             cCCCccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcCCCcc
Confidence            3322        23445654432        345778999999999999999999996322  2233444444433110 


Q ss_pred             -Cccc---c---------CCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          589 -LQQF---V---------DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       589 -~~~~---~---------d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                       ...+   .         -+............+.+++.+||+.||++||++.++++.+++++..
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~~  310 (396)
T 4eut_A          247 AISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHR  310 (396)
T ss_dssp             CCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHTC
T ss_pred             cchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhhc
Confidence             0000   0         0111234577788899999999999999999999999999999764

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=5.7e-37  Score=324.04  Aligned_cols=241  Identities=18%  Similarity=0.224  Sum_probs=191.3

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      ..+.||+|+||.||+|+. .++..||||++......  .....++|.+|++++++++||||+++++++...+  ..++||
T Consensus        58 ~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~--~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~--~~~lv~  133 (348)
T 1u5q_A           58 DLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQ--SNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREH--TAWLVM  133 (348)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSC--HHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             eeeEEccCCCEEEEEEEEccCCeEEEEEEEcccccc--chHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECC--eEEEEE
Confidence            347899999999999996 57899999998754322  1334567999999999999999999999998877  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||++ |+|.+++.. ....+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....   
T Consensus       134 e~~~-g~l~~~l~~-~~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~  209 (348)
T 1u5q_A          134 EYCL-GSASDLLEV-HKKPLQEVEIAAVTHGALQGLAYLHSHN--MIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANS  209 (348)
T ss_dssp             ECCS-EEHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCSGGGEEEETTTEEEECCCTTCBSSSSBCC
T ss_pred             ecCC-CCHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhCC--eeeCCCCHHHEEECCCCCEEEeeccCceecCCCCc
Confidence            9997 688888753 2456999999999999999999999998  99999999999999999999999999876532   


Q ss_pred             --hhhhccccccc---CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          530 --AEMAATSKKLS---SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       530 --~~~~~~~pe~~---~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                        ....+.+||..   ....++.++|||||||++|||+||+.||..  ....+...........  ...       +...
T Consensus       210 ~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~--~~~~~~~~~~~~~~~~--~~~-------~~~~  278 (348)
T 1u5q_A          210 FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFN--MNAMSALYHIAQNESP--ALQ-------SGHW  278 (348)
T ss_dssp             CCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTT--SCHHHHHHHHHHSCCC--CCC-------CTTS
T ss_pred             ccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCC--CChHHHHHHHHhcCCC--CCC-------CCCC
Confidence              23455678765   345688899999999999999999999843  2333333333322111  000       1122


Q ss_pred             HHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 006019          605 LETLGELIKSCVRADPEKRPTMRDIAAIL  633 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L  633 (664)
                      +..+.+++.+||+.||++||++.++++..
T Consensus       279 ~~~l~~li~~~l~~dP~~Rps~~~ll~h~  307 (348)
T 1u5q_A          279 SEYFRNFVDSCLQKIPQDRPTSEVLLKHR  307 (348)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHTTCH
T ss_pred             CHHHHHHHHHHcccChhhCcCHHHHhhCh
Confidence            35688999999999999999999998753

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=8.4e-38  Score=327.67  Aligned_cols=252  Identities=17%  Similarity=0.236  Sum_probs=194.8

Q ss_pred             hhhcccccCCCeEEEEEEE-----CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCce
Q 006019          373 DFSNVIGSSPIGTVYKGTL-----SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  447 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~-----~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  447 (664)
                      .+.+.||+|+||.||+|++     .++..||||++....     ....+.|.+|++++++++||||+++++++...+...
T Consensus        26 ~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~  100 (327)
T 3lxl_A           26 KYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSG-----PDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQS  100 (327)
T ss_dssp             EEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCC-----HHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCE
T ss_pred             hhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCC-----HHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCce
Confidence            3458899999999999995     368899999986432     344567999999999999999999999987544446


Q ss_pred             eEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhh
Q 006019          448 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~  527 (664)
                      .++||||+++|+|.+++... ...+++..+..|+.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++..
T Consensus       101 ~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~~~--ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~  177 (327)
T 3lxl_A          101 LRLVMEYLPSGCLRDFLQRH-RARLDASRLLLYSSQICKGMEYLGSRR--CVHRDLAARNILVESEAHVKIADFGLAKLL  177 (327)
T ss_dssp             EEEEEECCTTCBHHHHHHHH-GGGCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEEETTEEEECCGGGCEEC
T ss_pred             EEEEEeecCCCCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHhCC--ccCCCCChhhEEECCCCCEEEcccccceec
Confidence            79999999999999998642 346999999999999999999999998  999999999999999999999999998765


Q ss_pred             hhh------------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCC------------hHHHHHHHh
Q 006019          528 AMA------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGS------------LEDWAADYL  583 (664)
Q Consensus       528 ~~~------------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~------------~~~~~~~~~  583 (664)
                      ...            ...+.+||......++.++||||||+++|||+||+.||......            .........
T Consensus       178 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (327)
T 3lxl_A          178 PLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELL  257 (327)
T ss_dssp             CTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHHH
T ss_pred             ccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHHh
Confidence            321            12255677666666788999999999999999999998421100            000011111


Q ss_pred             cCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCC
Q 006019          584 SGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP  641 (664)
Q Consensus       584 ~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~  641 (664)
                      ..         ......+..++..+.+++.+||+.||++||++.++++.|+.+.....
T Consensus       258 ~~---------~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~  306 (327)
T 3lxl_A          258 EE---------GQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGSR  306 (327)
T ss_dssp             HT---------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC-----
T ss_pred             hc---------ccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhhc
Confidence            11         11112233445678999999999999999999999999999976544

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=4.5e-37  Score=319.24  Aligned_cols=254  Identities=18%  Similarity=0.207  Sum_probs=189.9

Q ss_pred             hhhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC---CCcccceEEEEecCCC---
Q 006019          373 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN---HKNFVNLIGFCEEEEP---  445 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~---H~niv~l~g~~~~~~~---  445 (664)
                      .+.+.||+|+||.||+|+. .+++.||+|++...............+.+|++++++++   ||||+++++++.....   
T Consensus        12 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~~~~~   91 (308)
T 3g33_A           12 EPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSRTDRE   91 (308)
T ss_dssp             EEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECCSSSE
T ss_pred             EEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccCCCCc
Confidence            4458899999999999995 56899999999765433222222345677777777664   9999999999976442   


Q ss_pred             ceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchh
Q 006019          446 FTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN  525 (664)
Q Consensus       446 ~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~  525 (664)
                      ...++||||+. |+|.+++.......+++..+..|+.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++
T Consensus        92 ~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~--ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~  168 (308)
T 3g33_A           92 IKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHANC--IVHRDLKPENILVTSGGTVKLADFGLAR  168 (308)
T ss_dssp             EEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCTTTEEECTTSCEEECSCSCTT
T ss_pred             eeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEEcCCCCEEEeeCcccc
Confidence            13689999997 69999997655566999999999999999999999999  9999999999999999999999999997


Q ss_pred             hhhhh--------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCC-----CCcc-
Q 006019          526 EIAMA--------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-----PLQQ-  591 (664)
Q Consensus       526 ~~~~~--------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~-----~~~~-  591 (664)
                      .....        ...+.+||......++.++|||||||++|||+||+.||...  ...+..........     .... 
T Consensus       169 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~  246 (308)
T 3g33_A          169 IYSYQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGN--SEADQLGKIFDLIGLPPEDDWPRD  246 (308)
T ss_dssp             TSTTCCCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCS--SHHHHHHHHHHHHCCCCTTTSCSS
T ss_pred             ccCCCcccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHhCCCChhhccch
Confidence            65321        23456788777777899999999999999999999999432  22222222221100     0000 


Q ss_pred             ------ccCCCCC----CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          592 ------FVDPTLS----SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       592 ------~~d~~~~----~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                            ...+...    ...++....+.+++.+||+.||++|||+.|+++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  296 (308)
T 3g33_A          247 VSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQ  296 (308)
T ss_dssp             CSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             hhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhc
Confidence                  0000000    001123457889999999999999999999875

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=1.2e-36  Score=325.75  Aligned_cols=239  Identities=15%  Similarity=0.258  Sum_probs=191.8

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. ++..+|+|.+....     ......+.+|+++|++++||||+++++++.+.+  ..++||
T Consensus        55 i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-----~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~--~~~lv~  127 (387)
T 1kob_A           55 ILEELGSGAFGVVHRCVEKATGRVFVAKFINTPY-----PLDKYTVKNEISIMNQLHHPKLINLHDAFEDKY--EMVLIL  127 (387)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-----HHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSS--EEEEEE
T ss_pred             EEEEEecCCCEEEEEEEECCCCCEEEEEEecccc-----hhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCC--EEEEEE
Confidence            4588999999999999975 68899999886432     223457899999999999999999999998876  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecC--CCceEecccCchhhhhh-
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE--DYAAKLSDLSFWNEIAM-  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~--~~~~kl~DfGla~~~~~-  529 (664)
                      ||+++|+|.+++.. ....+++..+..++.+++.||+|||+.+  |+||||||+|||++.  ++.+||+|||+++.... 
T Consensus       128 E~~~gg~L~~~l~~-~~~~l~~~~~~~i~~qi~~aL~~LH~~g--ivHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~  204 (387)
T 1kob_A          128 EFLSGGELFDRIAA-EDYKMSEAEVINYMRQACEGLKHMHEHS--IVHLDIKPENIMCETKKASSVKIIDFGLATKLNPD  204 (387)
T ss_dssp             ECCCCCBHHHHTTC-TTCCBCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEESSTTCCCEEECCCTTCEECCTT
T ss_pred             EcCCCCcHHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHHhCC--eeecccchHHeEEecCCCCceEEEecccceecCCC
Confidence            99999999999863 3346999999999999999999999998  999999999999984  47899999999886532 


Q ss_pred             -------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          530 -------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       530 -------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                             ....+.+||......++.++|||||||++|||+||+.||..  ....+.............   ....    .
T Consensus       205 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~--~~~~~~~~~i~~~~~~~~---~~~~----~  275 (387)
T 1kob_A          205 EIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAG--EDDLETLQNVKRCDWEFD---EDAF----S  275 (387)
T ss_dssp             SCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCC--SSHHHHHHHHHHCCCCCC---SSTT----T
T ss_pred             cceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCC--CCHHHHHHHHHhCCCCCC---cccc----c
Confidence                   23456678888778889999999999999999999999943  233333333322211111   1111    1


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          603 EQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ..+.++.+++.+||+.||++||++.|+++
T Consensus       276 ~~s~~~~~li~~~L~~dP~~Rpt~~ell~  304 (387)
T 1kob_A          276 SVSPEAKDFIKNLLQKEPRKRLTVHDALE  304 (387)
T ss_dssp             TSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             cCCHHHHHHHHHHcCCChhHCcCHHHHhh
Confidence            22356889999999999999999999886

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=5.6e-37  Score=316.03  Aligned_cols=248  Identities=15%  Similarity=0.218  Sum_probs=189.1

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. +++.||+|++......   ....+.+.+|++++++++||||+++++++.+.+  ..++||
T Consensus         6 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~   80 (292)
T 3o0g_A            6 KLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDD---EGVPSSALREICLLKELKHKNIVRLHDVLHSDK--KLTLVF   80 (292)
T ss_dssp             EEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSS---TTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             eeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCc---CCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCC--EEEEEE
Confidence            3478999999999999975 5889999999754432   244577899999999999999999999998877  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++ ++.+.+.. ....+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....   
T Consensus        81 e~~~~-~l~~~~~~-~~~~l~~~~~~~~~~ql~~~l~~lH~~~--ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  156 (292)
T 3o0g_A           81 EFCDQ-DLKKYFDS-CNGDLDPEIVKSFLFQLLKGLGFCHSRN--VLHRDLKPQNLLINRNGELKLANFGLARAFGIPVR  156 (292)
T ss_dssp             ECCSE-EHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTSCEEECCCTTCEECCSCCS
T ss_pred             ecCCC-CHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEcCCCCEEEeecccceecCCccc
Confidence            99975 66665542 3456999999999999999999999998  99999999999999999999999999876531   


Q ss_pred             ------hhhhcccccccCCCC-CCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCC-----CCc---ccc-
Q 006019          530 ------AEMAATSKKLSSAPS-ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-----PLQ---QFV-  593 (664)
Q Consensus       530 ------~~~~~~~pe~~~~~~-~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~-----~~~---~~~-  593 (664)
                            ....+.+||...... ++.++|||||||++|||+||+.|+... .+..+..........     ...   ... 
T Consensus       157 ~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  235 (292)
T 3o0g_A          157 CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPG-NDVDDQLKRIFRLLGTPTEEQWPSMTKLPD  235 (292)
T ss_dssp             CCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCC-SSHHHHHHHHHHHHCCCCTTTCTTGGGSTT
T ss_pred             cccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCC-CCHHHHHHHHHHHhCCCChhhhhhhccccc
Confidence                  133456788765544 799999999999999999998886432 222332222221100     000   000 


Q ss_pred             ---------CCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          594 ---------DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       594 ---------d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                               ........+.....+.+++.+||+.||++|||++|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  282 (292)
T 3o0g_A          236 YKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             CCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence                     00111122334567889999999999999999999876

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=4.4e-38  Score=321.84  Aligned_cols=242  Identities=24%  Similarity=0.383  Sum_probs=189.6

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.+.||+|+||.||+|+.. |..||||.+....       ..+.|.+|++++++++||||+++++++.+.+. ..++|||
T Consensus        25 ~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~-------~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~-~~~lv~e   95 (278)
T 1byg_A           25 LLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA-------TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKG-GLYIVTE   95 (278)
T ss_dssp             EEEEEEECSSCEEEEEEET-TEEEEEEECCCCC---------HHHHHTHHHHTTCCCTTBCCEEEEECCC---CCEEEEC
T ss_pred             EEeEEecCCCceEEEEEEc-CCEEEEEEecchh-------HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCC-ceEEEEe
Confidence            4588999999999999984 7899999885322       34679999999999999999999999865432 4689999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      |+++|+|.+++.......+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++.....   
T Consensus        96 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~  173 (278)
T 1byg_A           96 YMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN--FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDT  173 (278)
T ss_dssp             CCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEECTTSCEEECCCCC----------
T ss_pred             cCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhCC--ccccCCCcceEEEeCCCcEEEeeccccccccccccC
Confidence            999999999987543344889999999999999999999998  999999999999999999999999998765422   


Q ss_pred             ---hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHH
Q 006019          531 ---EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE  606 (664)
Q Consensus       531 ---~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  606 (664)
                         ...+.+||......++.++||||||+++|||+| |+.||...  ...+.......+.          ....+...+.
T Consensus       174 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~--~~~~~~~~~~~~~----------~~~~~~~~~~  241 (278)
T 1byg_A          174 GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI--PLKDVVPRVEKGY----------KMDAPDGCPP  241 (278)
T ss_dssp             --CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTS--CGGGHHHHHTTTC----------CCCCCTTCCH
T ss_pred             CCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHhcCC----------CCCCcccCCH
Confidence               223556777666778999999999999999999 99999432  2222222222210          0112223346


Q ss_pred             HHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          607 TLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       607 ~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      .+.+++.+||+.||++||++.++++.|+++..
T Consensus       242 ~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~  273 (278)
T 1byg_A          242 AVYEVMKNCWHLDAAMRPSFLQLREQLEHIKT  273 (278)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCChhhCCCHHHHHHHHHHHHh
Confidence            78999999999999999999999999999864

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=8.1e-37  Score=318.68  Aligned_cols=237  Identities=18%  Similarity=0.237  Sum_probs=192.9

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. +|+.||+|++.......  ....+.+.+|+.+++.++||||+++++++.+.+  ..++||
T Consensus        10 ~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~--~~~lv~   85 (318)
T 1fot_A           10 ILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVR--LKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQ--QIFMIM   85 (318)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHH--TTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSS--EEEEEE
T ss_pred             EEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCC--EEEEEE
Confidence            3488999999999999975 68999999987543211  122456889999999999999999999998876  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....   
T Consensus        86 e~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~~--ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~~~  161 (318)
T 1fot_A           86 DYIEGGELFSLLRK--SQRFPNPVAKFYAAEVCLALEYLHSKD--IIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTY  161 (318)
T ss_dssp             CCCCSCBHHHHHHH--TSSCCHHHHHHHHHHHHHHHHHHHTTT--EECCCCCGGGEEECTTSCEEECCCSSCEECSSCBC
T ss_pred             eCCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCChheEEEcCCCCEEEeecCcceecCCccc
Confidence            99999999999863  356899999999999999999999998  99999999999999999999999999876532   


Q ss_pred             ---hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHH
Q 006019          530 ---AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE  606 (664)
Q Consensus       530 ---~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  606 (664)
                         ....+.+||......++.++|||||||++|||+||+.||..  .+..+...........           ++.....
T Consensus       162 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~--~~~~~~~~~i~~~~~~-----------~p~~~~~  228 (318)
T 1fot_A          162 TLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYD--SNTMKTYEKILNAELR-----------FPPFFNE  228 (318)
T ss_dssp             CCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHHCCCC-----------CCTTSCH
T ss_pred             cccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCC--CCHHHHHHHHHhCCCC-----------CCCCCCH
Confidence               23345678887777889999999999999999999999943  3334444444433111           1222335


Q ss_pred             HHHHHHHHhccCCCCCCC-----CHHHHHH
Q 006019          607 TLGELIKSCVRADPEKRP-----TMRDIAA  631 (664)
Q Consensus       607 ~l~~l~~~Cl~~~P~~RP-----s~~ev~~  631 (664)
                      ++.+++.+|++.||++||     +++|+++
T Consensus       229 ~~~~li~~lL~~dp~~R~~~~~~~~~~i~~  258 (318)
T 1fot_A          229 DVKDLLSRLITRDLSQRLGNLQNGTEDVKN  258 (318)
T ss_dssp             HHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred             HHHHHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence            688999999999999999     8888874

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=1.3e-37  Score=318.77  Aligned_cols=243  Identities=19%  Similarity=0.320  Sum_probs=191.7

Q ss_pred             hhcccccCCCeEEEEEEECC----CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeE
Q 006019          374 FSNVIGSSPIGTVYKGTLSN----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  449 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~----~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~  449 (664)
                      +.+.||+|+||.||+|++.+    +..||+|.+....    .....+.|.+|++++++++||||+++++++.+.   ..+
T Consensus        16 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~---~~~   88 (281)
T 3cc6_A           16 LNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDC----TLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEE---PTW   88 (281)
T ss_dssp             EEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTS----CHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSS---SCE
T ss_pred             EEEEEEecCCeeEEEeEEcCCCCCcceEEEEeccccc----CchHHHHHHHHHHHHHhCCCCCcceEEEEEcCC---CCE
Confidence            44889999999999998643    3358998875432    234567899999999999999999999998754   348


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                      +||||+++|+|.+++.. ....+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++....
T Consensus        89 ~v~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  165 (281)
T 3cc6_A           89 IIMELYPYGELGHYLER-NKNSLKVLTLVLYSLQICKAMAYLESIN--CVHRDIAVRNILVASPECVKLGDFGLSRYIED  165 (281)
T ss_dssp             EEEECCTTCBHHHHHHH-HTTTCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCSGGGEEEEETTEEEECCCCGGGCC--
T ss_pred             EEEecCCCCCHHHHHHh-ccccCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCccceEEECCCCcEEeCccCCCccccc
Confidence            99999999999999864 3456899999999999999999999998  99999999999999999999999999876532


Q ss_pred             h----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 006019          530 A----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       530 ~----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                      .          ...+.+||......++.++||||||+++|||+| |+.||.....  .+........ ..         .
T Consensus       166 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~--~~~~~~~~~~-~~---------~  233 (281)
T 3cc6_A          166 EDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLEN--KDVIGVLEKG-DR---------L  233 (281)
T ss_dssp             -------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCG--GGHHHHHHHT-CC---------C
T ss_pred             ccccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCCh--HHHHHHHhcC-CC---------C
Confidence            2          123567777666778899999999999999999 9999953221  1122211111 10         0


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      ..+...+..+.+++.+||+.||++||++.|+++.|+++..
T Consensus       234 ~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~  273 (281)
T 3cc6_A          234 PKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQ  273 (281)
T ss_dssp             CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHHH
Confidence            1112233568899999999999999999999999999865

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=2e-37  Score=322.44  Aligned_cols=241  Identities=18%  Similarity=0.188  Sum_probs=184.9

Q ss_pred             HHHHHhhhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCC
Q 006019          367 LEAACEDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEE  444 (664)
Q Consensus       367 l~~~~~~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~  444 (664)
                      +......+.+.||+|+||.||+|+.. +++.||||++......   .....++..|+..+.++ +||||++++++|.+.+
T Consensus        54 ~~~~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~  130 (311)
T 3p1a_A           54 FFQQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRG---PKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGG  130 (311)
T ss_dssp             HHHHHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCS---HHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT
T ss_pred             hhhhheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccC---hHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCC
Confidence            33334445589999999999999976 6899999987543221   23344566666666655 8999999999998877


Q ss_pred             CceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCch
Q 006019          445 PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW  524 (664)
Q Consensus       445 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla  524 (664)
                        ..++||||+ +|+|.+++... ...++|..+..|+.+++.||+|||+.+  |+||||||+|||++.++.+||+|||++
T Consensus       131 --~~~lv~e~~-~~~L~~~~~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dikp~NIll~~~~~~kl~DFG~a  204 (311)
T 3p1a_A          131 --ILYLQTELC-GPSLQQHCEAW-GASLPEAQVWGYLRDTLLALAHLHSQG--LVHLDVKPANIFLGPRGRCKLGDFGLL  204 (311)
T ss_dssp             --EEEEEEECC-CCBHHHHHHHH-CSCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECGGGCEEECCCTTC
T ss_pred             --EEEEEEecc-CCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCC--EecCCCCHHHEEECCCCCEEEccceee
Confidence              779999999 67999888643 456999999999999999999999998  999999999999999999999999998


Q ss_pred             hhhhh--------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCC
Q 006019          525 NEIAM--------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  596 (664)
Q Consensus       525 ~~~~~--------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  596 (664)
                      +....        ....+.+||...+ .++.++|||||||++|||++|+.|+...    ..|. ..... . ....    
T Consensus       205 ~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~----~~~~-~~~~~-~-~~~~----  272 (311)
T 3p1a_A          205 VELGTAGAGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGG----EGWQ-QLRQG-Y-LPPE----  272 (311)
T ss_dssp             EECC------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSH----HHHH-HHTTT-C-CCHH----
T ss_pred             eecccCCCCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCc----cHHH-HHhcc-C-CCcc----
Confidence            76532        2335667887765 6899999999999999999997765221    1111 11111 0 0000    


Q ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          597 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       597 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                         .+.....++.+++.+||+.||++||++.|+++
T Consensus       273 ---~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~  304 (311)
T 3p1a_A          273 ---FTAGLSSELRSVLVMMLEPDPKLRATAEALLA  304 (311)
T ss_dssp             ---HHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             ---cccCCCHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence               11122357899999999999999999999886

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.8e-36  Score=318.45  Aligned_cols=252  Identities=21%  Similarity=0.351  Sum_probs=189.8

Q ss_pred             HhhhhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc--CCCcccceEEEEecCCC--c
Q 006019          371 CEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV--NHKNFVNLIGFCEEEEP--F  446 (664)
Q Consensus       371 ~~~~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l--~H~niv~l~g~~~~~~~--~  446 (664)
                      ...+.+.||+|+||.||+|+.. +..||||++....        ...+..|.+++...  +||||+++++++.....  .
T Consensus        38 ~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~--------~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~  108 (337)
T 3mdy_A           38 QIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTTE--------EASWFRETEIYQTVLMRHENILGFIAADIKGTGSWT  108 (337)
T ss_dssp             HCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGGG--------HHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGC
T ss_pred             ceEEEeEeecCCCeEEEEEEEC-CceEEEEEEeccc--------cchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCC
Confidence            3345589999999999999985 8899999985321        23455566666554  89999999999987631  2


Q ss_pred             eeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcC------CCCeEEeCcCCCCeEecCCCceEecc
Q 006019          447 TRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL------NPPIAHNYLNSSAVHLTEDYAAKLSD  520 (664)
Q Consensus       447 ~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~------~~~ivHrDLk~~NILld~~~~~kl~D  520 (664)
                      ..++||||+++|+|.++++.   ..+++..+..++.+++.||+|||+.      .+.|+||||||+|||++.++.+||+|
T Consensus       109 ~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~D  185 (337)
T 3mdy_A          109 QLYLITDYHENGSLYDYLKS---TTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIAD  185 (337)
T ss_dssp             EEEEEECCCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECC
T ss_pred             ceEEEEeccCCCcHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEe
Confidence            67999999999999999963   3599999999999999999999987      22399999999999999999999999


Q ss_pred             cCchhhhhh-------------hhhhcccccccCCCCCCcC------CcchhhHHHHHHHHhC----------CCCccCC
Q 006019          521 LSFWNEIAM-------------AEMAATSKKLSSAPSASLE------SNVYNFGVLLFEMVTG----------RLPYLVD  571 (664)
Q Consensus       521 fGla~~~~~-------------~~~~~~~pe~~~~~~~s~k------sDVySfGvvl~El~tG----------~~P~~~~  571 (664)
                      ||+++....             ....+.+||.......+.+      +|||||||++|||+||          +.||...
T Consensus       186 fg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~  265 (337)
T 3mdy_A          186 LGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDL  265 (337)
T ss_dssp             CTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTT
T ss_pred             CCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhh
Confidence            999865421             2234567777665555544      8999999999999999          6666321


Q ss_pred             C---CChHHHHHHHhcCCCCCccccCCCCCC--CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCC
Q 006019          572 N---GSLEDWAADYLSGVQPLQQFVDPTLSS--FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  640 (664)
Q Consensus       572 ~---~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~  640 (664)
                      .   .....+. ..... ..    ..+....  ...+++.++.+++.+||+.||++||++.+|++.|+++.+..
T Consensus       266 ~~~~~~~~~~~-~~~~~-~~----~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~  333 (337)
T 3mdy_A          266 VPSDPSYEDMR-EIVCI-KK----LRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSESQ  333 (337)
T ss_dssp             SCSSCCHHHHH-HHHTT-SC----CCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred             cCCCCchhhhH-HHHhh-hc----cCccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhhc
Confidence            1   1111111 11111 00    1111111  12367788999999999999999999999999999997653

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.9e-37  Score=323.30  Aligned_cols=248  Identities=18%  Similarity=0.285  Sum_probs=185.4

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcccceEEEEecC------CC
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEE------EP  445 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~------~~  445 (664)
                      +.+.||+|+||.||+|+.. +++.||||++....     ....+.+.+|+.++++++ ||||+++++++...      ..
T Consensus        32 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-----~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~  106 (337)
T 3ll6_A           32 VRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNE-----EEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQ  106 (337)
T ss_dssp             EEEEEECCSSEEEEEEEETTTCCEEEEEEEEESS-----HHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSS
T ss_pred             EEEEEccCCceEEEEEEECCCCcEEEEEEecCCc-----hHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCC
Confidence            4588999999999999964 68999999885432     234567999999999996 99999999999522      12


Q ss_pred             ceeEEEEEecCCCChhhhhcc-cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCch
Q 006019          446 FTRMMVFEYAPNGTLFEHIHI-KESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW  524 (664)
Q Consensus       446 ~~~~lV~Ey~~~GsL~~~l~~-~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla  524 (664)
                      ...++|+||+. |+|.+++.. .....+++..+..|+.+++.||+|||+.+++|+||||||+|||++.++.+||+|||++
T Consensus       107 ~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~  185 (337)
T 3ll6_A          107 AEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGTIKLCDFGSA  185 (337)
T ss_dssp             EEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTSSSCCBCCCCCGGGCEECTTSCEEBCCCTTC
T ss_pred             ceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEccCCcccEEECCCCCEEEecCccc
Confidence            24789999996 799998864 2345699999999999999999999998878999999999999999999999999998


Q ss_pred             hhhhh---------------------hhhhccccccc---CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHH
Q 006019          525 NEIAM---------------------AEMAATSKKLS---SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAA  580 (664)
Q Consensus       525 ~~~~~---------------------~~~~~~~pe~~---~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~  580 (664)
                      +....                     ....+.+||..   ....++.++|||||||++|||+||+.||.....  .+.  
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~--~~~--  261 (337)
T 3ll6_A          186 TTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAK--LRI--  261 (337)
T ss_dssp             BCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC------------
T ss_pred             eeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhH--HHh--
Confidence            76431                     22345678876   456678899999999999999999999942211  111  


Q ss_pred             HHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCCC
Q 006019          581 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPD  642 (664)
Q Consensus       581 ~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~~  642 (664)
                        ......     .+.    .......+.+++.+||+.||++||++.|+++.|+++......
T Consensus       262 --~~~~~~-----~~~----~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~~~~  312 (337)
T 3ll6_A          262 --VNGKYS-----IPP----HDTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAARNV  312 (337)
T ss_dssp             ------CC-----CCT----TCCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHTTC
T ss_pred             --hcCccc-----CCc----ccccchHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhccCC
Confidence              110000     000    111123478999999999999999999999999999765443

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=9.3e-38  Score=330.88  Aligned_cols=250  Identities=16%  Similarity=0.184  Sum_probs=193.1

Q ss_pred             hhcccccCCCeEEEEEEECC---------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccc---------
Q 006019          374 FSNVIGSSPIGTVYKGTLSN---------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN---------  435 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~---------~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~---------  435 (664)
                      +.+.||+|+||.||+|+...         +..||+|.+...          +.+.+|++++++++||||++         
T Consensus        46 ~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~----------~~~~~E~~~l~~l~h~niv~~~~~~~~~~  115 (352)
T 2jii_A           46 LKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD----------GRLFNEQNFFQRAAKPLQVNKWKKLYSTP  115 (352)
T ss_dssp             EEEEEEEETTEEEEEEEECC-----------CEEEEEEETT----------STHHHHHHHHHHHCCHHHHHHHHHHTTCT
T ss_pred             EEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc----------chHHHHHHHHHHhcccchhhhhhhhccCC
Confidence            45889999999999999764         789999998632          35889999999999999998         


Q ss_pred             ------eEEEEecCCCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeE
Q 006019          436 ------LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH  509 (664)
Q Consensus       436 ------l~g~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NIL  509 (664)
                            +++++...+. ..++||||+ +|+|.+++.......+++..+..|+.+++.||+|||+.+  |+||||||+|||
T Consensus       116 ~~~i~~~~~~~~~~~~-~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~--ivH~Dikp~NIl  191 (352)
T 2jii_A          116 LLAIPTCMGFGVHQDK-YRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHENE--YVHGNVTAENIF  191 (352)
T ss_dssp             TCSCCCCCEEEEETTT-EEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTT--CBCSCCCGGGEE
T ss_pred             ccCccchhhccccCCc-EEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhCC--ccCCCCCHHHEE
Confidence                  6777776332 679999999 999999997544567999999999999999999999998  999999999999


Q ss_pred             ecCCC--ceEecccCchhhhhhh----------------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCC
Q 006019          510 LTEDY--AAKLSDLSFWNEIAMA----------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVD  571 (664)
Q Consensus       510 ld~~~--~~kl~DfGla~~~~~~----------------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~  571 (664)
                      ++.++  .+||+|||+++.....                ...+.+||......++.++|||||||++|||+||+.||...
T Consensus       192 ~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~  271 (352)
T 2jii_A          192 VDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNC  271 (352)
T ss_dssp             EETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGG
T ss_pred             EcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccC
Confidence            99998  9999999999765322                22445677777778899999999999999999999999644


Q ss_pred             CCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          572 NGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                      ....................+.+....  ....+.++.+++.+||+.||++||++.+|++.|+++...
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~  337 (352)
T 2jii_A          272 LPNTEDIMKQKQKFVDKPGPFVGPCGH--WIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQD  337 (352)
T ss_dssp             TTCHHHHHHHHHHHHHSCCCEECTTSC--EECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHhccCChhhhhhhccc--cCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHHh
Confidence            323222221111000111111111110  011235689999999999999999999999999999754

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=3e-37  Score=322.09  Aligned_cols=247  Identities=18%  Similarity=0.261  Sum_probs=179.3

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. +|+.||+|++.......    ..+.+.+|++++++++||||+++++++...+  ..++||
T Consensus         9 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~----~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~lv~   82 (317)
T 2pmi_A            9 QLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEG----TPSTAIREISLMKELKHENIVRLYDVIHTEN--KLTLVF   82 (317)
T ss_dssp             ----------CEEEEEECSSSCCEEEEEEEECCSTTC----SCHHHHHHHHHHTTCCBTTBCCEEEEECCTT--EEEEEE
T ss_pred             EeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccc----cHHHHHHHHHHHHhcCCCCcceEEEEEEECC--eEEEEE
Confidence            3478999999999999964 58999999987544222    2356889999999999999999999998876  679999


Q ss_pred             EecCCCChhhhhccc----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          453 EYAPNGTLFEHIHIK----ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~----~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ||++ |+|.+++...    ....+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...
T Consensus        83 e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~--ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~  159 (317)
T 2pmi_A           83 EFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENK--ILHRDLKPQNLLINKRGQLKLGDFGLARAFG  159 (317)
T ss_dssp             ECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECTTCCEEECCCSSCEETT
T ss_pred             EecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCC--eeeCCCChHHeEEcCCCCEEECcCccceecC
Confidence            9998 6999888543    2346899999999999999999999998  9999999999999999999999999987653


Q ss_pred             h---------hhhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCC-----CCccc-
Q 006019          529 M---------AEMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-----PLQQF-  592 (664)
Q Consensus       529 ~---------~~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~-----~~~~~-  592 (664)
                      .         ....+.+||.... ..++.++|||||||++|||+||+.||....  ..+..........     ..... 
T Consensus       160 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~--~~~~~~~i~~~~~~~~~~~~~~~~  237 (317)
T 2pmi_A          160 IPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTN--DEEQLKLIFDIMGTPNESLWPSVT  237 (317)
T ss_dssp             SCCCCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHCSCCTTTCGGGG
T ss_pred             CCcccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHHHhCCCChhHhhhhh
Confidence            2         1234567776654 457899999999999999999999995322  2222222211000     00000 


Q ss_pred             ----cCCCCCC-------------CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          593 ----VDPTLSS-------------FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       593 ----~d~~~~~-------------~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                          ..+....             .......++.+++.+||+.||++|||+.|+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~  293 (317)
T 2pmi_A          238 KLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALH  293 (317)
T ss_dssp             GCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             hhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhC
Confidence                0000000             01122356899999999999999999999875

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.3e-37  Score=324.18  Aligned_cols=253  Identities=18%  Similarity=0.296  Sum_probs=193.1

Q ss_pred             hhcccccCCCeEEEEEEE-----CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          374 FSNVIGSSPIGTVYKGTL-----SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-----~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      +.+.||+|+||.||+|++     .++..||||++....     ....+.|.+|++++++++||||+++++++...+....
T Consensus        45 ~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~  119 (326)
T 2w1i_A           45 FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHST-----EEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL  119 (326)
T ss_dssp             EEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCC-----SHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CC
T ss_pred             eeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCC-----HHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCce
Confidence            458899999999999985     368899999986422     2345789999999999999999999999876543356


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++||||+++|+|.+++... ...+++..+.+++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||+++...
T Consensus       120 ~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~  196 (326)
T 2w1i_A          120 KLIMEYLPYGSLRDYLQKH-KERIDHIKLLQYTSQICKGMEYLGTKR--YIHRDLATRNILVENENRVKIGDFGLTKVLP  196 (326)
T ss_dssp             EEEECCCTTCBHHHHHHHS-TTSSCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEEEETTEEEECCCTTCEECC
T ss_pred             EEEEECCCCCCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHhCC--EeccCCCcceEEEcCCCcEEEecCcchhhcc
Confidence            8999999999999999643 356999999999999999999999998  9999999999999999999999999987653


Q ss_pred             hh------------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCC-------C
Q 006019          529 MA------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP-------L  589 (664)
Q Consensus       529 ~~------------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~-------~  589 (664)
                      ..            ...+.+||......++.++||||||+++|||+||+.|+...   ..++... ......       +
T Consensus       197 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~  272 (326)
T 2w1i_A          197 QDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSP---PAEFMRM-IGNDKQGQMIVFHL  272 (326)
T ss_dssp             SSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSH---HHHHHHH-HCTTCCTHHHHHHH
T ss_pred             ccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCC---HHHHHHh-hccccchhhhHHHH
Confidence            21            12345677665566788999999999999999999998421   1111100 000000       0


Q ss_pred             cccc-CCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          590 QQFV-DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       590 ~~~~-d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      ...+ .......+..++.++.+++.+||+.||++||++.|+++.|+++.+
T Consensus       273 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~  322 (326)
T 2w1i_A          273 IELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRD  322 (326)
T ss_dssp             HHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHhhcCCCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence            0000 000111233345679999999999999999999999999999864

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=2.5e-36  Score=315.61  Aligned_cols=245  Identities=18%  Similarity=0.262  Sum_probs=195.2

Q ss_pred             hhhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCC-chhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeE
Q 006019          372 EDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDW-PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  449 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~  449 (664)
                      +.+.+.||+|+||.||+|+.. +|..||+|.+........ .....+++.+|++++++++||||+++++++.+.+  ..+
T Consensus        14 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~   91 (321)
T 2a2a_A           14 YDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRT--DVV   91 (321)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EEE
T ss_pred             EEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCC--EEE
Confidence            345689999999999999975 588999999976543321 1123567999999999999999999999998876  679


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC----ceEecccCchh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY----AAKLSDLSFWN  525 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~----~~kl~DfGla~  525 (664)
                      +||||+++|+|.+++..  ...+++..+..++.+++.||+|||+.+  |+||||||+||+++.++    .+||+|||+++
T Consensus        92 lv~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~lH~~~--ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~  167 (321)
T 2a2a_A           92 LILELVSGGELFDFLAQ--KESLSEEEATSFIKQILDGVNYLHTKK--IAHFDLKPENIMLLDKNIPIPHIKLIDFGLAH  167 (321)
T ss_dssp             EEECCCCSCBHHHHHHT--CSCEEHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEESCTTSSSCCEEECCCTTCE
T ss_pred             EEEEcCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCChHHEEEecCCCCcCCEEEccCccce
Confidence            99999999999999863  456899999999999999999999998  99999999999999888    79999999987


Q ss_pred             hhhh--------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 006019          526 EIAM--------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  597 (664)
Q Consensus       526 ~~~~--------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  597 (664)
                      ....        ....+.+||......++.++||||||+++|||+||+.||..  ....+................    
T Consensus       168 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~--~~~~~~~~~i~~~~~~~~~~~----  241 (321)
T 2a2a_A          168 EIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLG--DTKQETLANITSVSYDFDEEF----  241 (321)
T ss_dssp             ECCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCC--SSHHHHHHHHHTTCCCCCHHH----
T ss_pred             ecCccccccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHhcccccChhh----
Confidence            6532        23346678887777889999999999999999999999943  233333333332211111000    


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          598 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       598 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                         ....+..+.+++.+||+.||++||++.|+++
T Consensus       242 ---~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~  272 (321)
T 2a2a_A          242 ---FSHTSELAKDFIRKLLVKETRKRLTIQEALR  272 (321)
T ss_dssp             ---HTTCCHHHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred             ---hcccCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence               0112356889999999999999999999886

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=5.2e-37  Score=327.65  Aligned_cols=239  Identities=17%  Similarity=0.272  Sum_probs=190.7

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+++.. +++.||+|++.......  ....+.+.+|++++++++|||||++++++.+.+  ..++||
T Consensus        19 i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~--~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~--~~~lv~   94 (384)
T 4fr4_A           19 ILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVE--RNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEE--DMFMVV   94 (384)
T ss_dssp             EEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHH--TTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             EEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhccc--HHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC--EEEEEE
Confidence            4488999999999999965 58899999986533211  123467899999999999999999999998877  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++|+|.+++..  ...+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....   
T Consensus        95 e~~~gg~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~LH~~g--ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~  170 (384)
T 4fr4_A           95 DLLLGGDLRYHLQQ--NVHFKEETVKLFICELVMALDYLQNQR--IIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQ  170 (384)
T ss_dssp             CCCTTEEHHHHHHT--TCCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTSCEEECCCTTCEECCTTCC
T ss_pred             ecCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--ceeccCcHHHeEECCCCCEEEeccceeeeccCCCc
Confidence            99999999999863  456999999999999999999999999  99999999999999999999999999976532   


Q ss_pred             -----hhhhcccccccCC---CCCCcCCcchhhHHHHHHHHhCCCCccCCCC-ChHHHHHHHhcCCCCCccccCCCCCCC
Q 006019          530 -----AEMAATSKKLSSA---PSASLESNVYNFGVLLFEMVTGRLPYLVDNG-SLEDWAADYLSGVQPLQQFVDPTLSSF  600 (664)
Q Consensus       530 -----~~~~~~~pe~~~~---~~~s~ksDVySfGvvl~El~tG~~P~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~  600 (664)
                           ....+.+||....   ..++.++|||||||++|||+||+.||..... ...+.........           ..+
T Consensus       171 ~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~-----------~~~  239 (384)
T 4fr4_A          171 ITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTFETTV-----------VTY  239 (384)
T ss_dssp             BCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHHHHCC-----------CCC
T ss_pred             eeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHHhhcc-----------cCC
Confidence                 2344667887653   3578899999999999999999999964332 2333333222211           112


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCC-HHHHHH
Q 006019          601 DEEQLETLGELIKSCVRADPEKRPT-MRDIAA  631 (664)
Q Consensus       601 ~~~~~~~l~~l~~~Cl~~~P~~RPs-~~ev~~  631 (664)
                      +......+.+++.+||+.||++||+ +.++.+
T Consensus       240 p~~~s~~~~~li~~lL~~dP~~R~s~~~~l~~  271 (384)
T 4fr4_A          240 PSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQN  271 (384)
T ss_dssp             CTTSCHHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred             CCcCCHHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence            2233457899999999999999998 666653

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=5.6e-37  Score=321.40  Aligned_cols=248  Identities=23%  Similarity=0.415  Sum_probs=194.9

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEE--EEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEI--AVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRM  449 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~v--avk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~  449 (664)
                      +.+.||+|+||.||+|+.. ++..+  ++|.+.....    ....+.+.+|+++++++ +||||+++++++.+.+  ..+
T Consensus        29 ~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~----~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~--~~~  102 (327)
T 1fvr_A           29 FQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYAS----KDDHRDFAGELEVLCKLGHHPNIINLLGACEHRG--YLY  102 (327)
T ss_dssp             EEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC----------CHHHHHHHHHTTCCCCTTBCCEEEEEEETT--EEE
T ss_pred             ceeeeecCCCceEEEEEEccCCcccceeeeeeccccc----hHHHHHHHHHHHHHHhccCCCchhhhceeeeeCC--ceE
Confidence            4588999999999999964 45544  8887764222    22346799999999999 8999999999998877  779


Q ss_pred             EEEEecCCCChhhhhcccC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCc
Q 006019          450 MVFEYAPNGTLFEHIHIKE--------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA  515 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~  515 (664)
                      +||||+++|+|.+++....              ...+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.
T Consensus       103 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~dlkp~NIl~~~~~~  180 (327)
T 1fvr_A          103 LAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ--FIHRDLAARNILVGENYV  180 (327)
T ss_dssp             EEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECGGGC
T ss_pred             EEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC--ccCCCCccceEEEcCCCe
Confidence            9999999999999986432              246999999999999999999999998  999999999999999999


Q ss_pred             eEecccCchhhhhh--------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCC
Q 006019          516 AKLSDLSFWNEIAM--------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGV  586 (664)
Q Consensus       516 ~kl~DfGla~~~~~--------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~  586 (664)
                      +||+|||+++....        ....+.+||......++.++||||||+++|||+| |+.||..  ....+.......+.
T Consensus       181 ~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~--~~~~~~~~~~~~~~  258 (327)
T 1fvr_A          181 AKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCG--MTCAELYEKLPQGY  258 (327)
T ss_dssp             EEECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTT--CCHHHHHHHGGGTC
T ss_pred             EEEcccCcCccccccccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCC--CcHHHHHHHhhcCC
Confidence            99999999874321        1223556776666667899999999999999999 9999943  33333333332221


Q ss_pred             CCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCC
Q 006019          587 QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP  641 (664)
Q Consensus       587 ~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~  641 (664)
                      .          ...+...+..+.+++.+||+.||++||++.++++.|+++.....
T Consensus       259 ~----------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~  303 (327)
T 1fvr_A          259 R----------LEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERK  303 (327)
T ss_dssp             C----------CCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSSS
T ss_pred             C----------CCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhhc
Confidence            0          01122234568999999999999999999999999999987543

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=6.4e-37  Score=313.06  Aligned_cols=238  Identities=17%  Similarity=0.307  Sum_probs=177.4

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+. .+++.||+|.+.......  ....+.+.+|++++++++||||+++++++.+.+  ..++||
T Consensus        15 ~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   90 (278)
T 3cok_A           15 VGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYK--AGMVQRVQNEVKIHCQLKHPSILELYNYFEDSN--YVYLVL   90 (278)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHH--TTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             eeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhh--hhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCC--eEEEEE
Confidence            347899999999999996 478999999986432211  122467999999999999999999999998876  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++|+|.+++.. ....+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++....   
T Consensus        91 e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~  167 (278)
T 3cok_A           91 EMCHNGEMNRYLKN-RVKPFSENEARHFMHQIITGMLYLHSHG--ILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHE  167 (278)
T ss_dssp             ECCTTEEHHHHHHT-CSSCCCHHHHHHHHHHHHHHHHHHHHTT--EECSSCCGGGEEECTTCCEEECCCTTCEECC----
T ss_pred             ecCCCCcHHHHHhh-ccCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEEcCCCCEEEEeecceeeccCCCC
Confidence            99999999999863 3457899999999999999999999998  99999999999999999999999999876431   


Q ss_pred             ------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          530 ------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       530 ------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                            ....+.+||......++.++||||||+++|||+||+.||......  +.....          .... ...+..
T Consensus       168 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~----------~~~~-~~~~~~  234 (278)
T 3cok_A          168 KHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVK--NTLNKV----------VLAD-YEMPSF  234 (278)
T ss_dssp             ------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC-------C----------CSSC-CCCCTT
T ss_pred             cceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHH--HHHHHH----------hhcc-cCCccc
Confidence                  123456788877777899999999999999999999999532211  111111          0000 011222


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ...++.+++.+||+.||++||++.++++
T Consensus       235 ~~~~~~~li~~~l~~dp~~Rps~~~~l~  262 (278)
T 3cok_A          235 LSIEAKDLIHQLLRRNPADRLSLSSVLD  262 (278)
T ss_dssp             SCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             cCHHHHHHHHHHcccCHhhCCCHHHHhc
Confidence            3456889999999999999999998875

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=6.7e-37  Score=313.01  Aligned_cols=246  Identities=20%  Similarity=0.241  Sum_probs=192.1

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. +++.||+|.+......   ....+.+.+|++++++++||||+++++++........++||
T Consensus        10 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~   86 (279)
T 2w5a_A           10 VLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMT---EAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVM   86 (279)
T ss_dssp             EEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCC---HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEEEE
T ss_pred             eehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCC---HHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEEEE
Confidence            3478999999999999975 6899999998754322   34467899999999999999999999988653333679999


Q ss_pred             EecCCCChhhhhccc--CCCCCCHHHHHHHHHHHHHHHHHhhcCC---CCeEEeCcCCCCeEecCCCceEecccCchhhh
Q 006019          453 EYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQLN---PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gL~yLH~~~---~~ivHrDLk~~NILld~~~~~kl~DfGla~~~  527 (664)
                      ||+++|+|.+++...  ....+++..+.+++.+++.||+|||+.+   .+++||||||+||+++.++.+||+|||+++..
T Consensus        87 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~~~  166 (279)
T 2w5a_A           87 EYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARIL  166 (279)
T ss_dssp             ECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCCHHHHC
T ss_pred             eCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCchheee
Confidence            999999999998643  3455999999999999999999999865   34999999999999999999999999998765


Q ss_pred             hhh---------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 006019          528 AMA---------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       528 ~~~---------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                      ...         ...+.+||......++.++||||||+++|||+||+.||...  ...+.......+..          .
T Consensus       167 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~--~~~~~~~~i~~~~~----------~  234 (279)
T 2w5a_A          167 NHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAF--SQKELAGKIREGKF----------R  234 (279)
T ss_dssp             ---CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHTCC----------C
T ss_pred             ccccccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCccc--CHHHHHHHHhhccc----------c
Confidence            321         22356788777777899999999999999999999999432  23333333322211          1


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 006019          599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILR  634 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~  634 (664)
                      ..+...+.++.+++.+||+.||++||++.||++.+.
T Consensus       235 ~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~  270 (279)
T 2w5a_A          235 RIPYRYSDELNEIITRMLNLKDYHRPSVEEILENPL  270 (279)
T ss_dssp             CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTT
T ss_pred             cCCcccCHHHHHHHHHHcCCCcccCCCHHHHHhChh
Confidence            112233457899999999999999999999987654

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=4.7e-37  Score=324.54  Aligned_cols=258  Identities=15%  Similarity=0.115  Sum_probs=186.5

Q ss_pred             hhcccccCCCeEEEEEEEC----CCcEEEEEEeeecccCCCc------hhHHHHHHHHHHHHhccCCCcccceEEEEecC
Q 006019          374 FSNVIGSSPIGTVYKGTLS----NGVEIAVASVSVASAKDWP------KNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEE  443 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~----~~~~vavk~~~~~~~~~~~------~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~  443 (664)
                      +.+.||+|+||.||+|+..    ++..+|+|+..........      ......+.+|+..++.++||||+++++++...
T Consensus        41 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~~~~~  120 (345)
T 2v62_A           41 LGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGSGLTE  120 (345)
T ss_dssp             EEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEEEEEE
T ss_pred             EEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecccccc
Confidence            4578999999999999975    5778999988654211000      00123477889999999999999999999772


Q ss_pred             --CCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC--ceEec
Q 006019          444 --EPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY--AAKLS  519 (664)
Q Consensus       444 --~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~--~~kl~  519 (664)
                        +....++||||+ +|+|.+++...  ..+++..+..|+.+++.||+|||+.+  |+||||||+|||++.++  .+||+
T Consensus       121 ~~~~~~~~lv~e~~-~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dlkp~NIll~~~~~~~~kL~  195 (345)
T 2v62_A          121 FKGRSYRFMVMERL-GIDLQKISGQN--GTFKKSTVLQLGIRMLDVLEYIHENE--YVHGDIKAANLLLGYKNPDQVYLA  195 (345)
T ss_dssp             SSSCEEEEEEEECE-EEEHHHHCBGG--GBCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEESSSTTSEEEC
T ss_pred             cCCCcEEEEEEecc-CCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCC--eeCCCcCHHHEEEccCCCCcEEEE
Confidence              122679999999 99999998643  37999999999999999999999998  99999999999999887  99999


Q ss_pred             ccCchhhhhh----------------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHh
Q 006019          520 DLSFWNEIAM----------------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYL  583 (664)
Q Consensus       520 DfGla~~~~~----------------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~  583 (664)
                      |||+++....                ....+.+||......++.++|||||||++|||+||+.||...............
T Consensus       196 Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~  275 (345)
T 2v62_A          196 DYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQTAKT  275 (345)
T ss_dssp             CCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHHHHHHH
T ss_pred             eCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHHHHHHH
Confidence            9999975522                123455677777777899999999999999999999999543332222111110


Q ss_pred             cCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          584 SGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       584 ~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      ...............  ....+.++.+++.+||+.||++||++.+|++.|+++.-
T Consensus       276 ~~~~~~~~~~~~~~~--~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~  328 (345)
T 2v62_A          276 NLLDELPQSVLKWAP--SGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGI  328 (345)
T ss_dssp             HHHHTTTHHHHHHSC--TTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTCC
T ss_pred             hhcccccHHHHhhcc--ccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccCC
Confidence            000001110000000  01233578999999999999999999999999998754

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=1.1e-36  Score=321.80  Aligned_cols=237  Identities=18%  Similarity=0.237  Sum_probs=193.5

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. +|..||+|++.......  ....+.+.+|++++++++||||+++++++.+.+  ..++||
T Consensus        45 ~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~lv~  120 (350)
T 1rdq_E           45 RIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVK--LKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNS--NLYMVM  120 (350)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHH--TTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             EEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhcc--HHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCC--EEEEEE
Confidence            3478999999999999975 68999999986543211  123467889999999999999999999998876  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++|+|.+++...  ..+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....   
T Consensus       121 e~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~--ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~~~  196 (350)
T 1rdq_E          121 EYVAGGEMFSHLRRI--GRFSEPHARFYAAQIVLTFEYLHSLD--LIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTW  196 (350)
T ss_dssp             ECCTTCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTSCEEECCCTTCEECSSCBC
T ss_pred             cCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCC--cccccCccceEEECCCCCEEEcccccceeccCCcc
Confidence            999999999998643  45899999999999999999999999  99999999999999999999999999886532   


Q ss_pred             ---hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHH
Q 006019          530 ---AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE  606 (664)
Q Consensus       530 ---~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  606 (664)
                         ....+.+||......++.++|||||||++|||+||+.||..  ....+.......+...           ++.....
T Consensus       197 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~--~~~~~~~~~i~~~~~~-----------~p~~~~~  263 (350)
T 1rdq_E          197 TLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFA--DQPIQIYEKIVSGKVR-----------FPSHFSS  263 (350)
T ss_dssp             CCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCC-----------CCTTCCH
T ss_pred             cccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCC--CCHHHHHHHHHcCCCC-----------CCCCCCH
Confidence               23456678887777889999999999999999999999943  3344444444433111           1222335


Q ss_pred             HHHHHHHHhccCCCCCCCC-----HHHHHH
Q 006019          607 TLGELIKSCVRADPEKRPT-----MRDIAA  631 (664)
Q Consensus       607 ~l~~l~~~Cl~~~P~~RPs-----~~ev~~  631 (664)
                      .+.+++.+||+.||++||+     ++||.+
T Consensus       264 ~~~~li~~lL~~dp~~R~~~~~~~~~ei~~  293 (350)
T 1rdq_E          264 DLKDLLRNLLQVDLTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             HHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred             HHHHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence            6899999999999999998     777764

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=7.4e-37  Score=335.21  Aligned_cols=237  Identities=22%  Similarity=0.340  Sum_probs=191.9

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. +|+.||||++.......  ......+.+|+++++.++||||+++++++...+  ..++||
T Consensus        20 l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~--~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~--~~~lv~   95 (476)
T 2y94_A           20 LGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRS--LDVVGKIRREIQNLKLFRHPHIIKLYQVISTPS--DIFMVM   95 (476)
T ss_dssp             EEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHH--TTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             EEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccC--HHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC--EEEEEE
Confidence            4578999999999999975 68999999997543211  123467899999999999999999999998877  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++|+|.+++.  ....+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....  
T Consensus        96 E~~~gg~L~~~l~--~~~~l~~~~~~~i~~qi~~aL~~LH~~g--ivHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~~  171 (476)
T 2y94_A           96 EYVSGGELFDYIC--KNGRLDEKESRRLFQQILSGVDYCHRHM--VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEF  171 (476)
T ss_dssp             ECCSSEEHHHHTT--SSSSCCHHHHHHHHHHHHHHHHHHHTTT--EECSCCSGGGEEECTTCCEEECCCSSCEECCTTCC
T ss_pred             eCCCCCcHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHCC--CCcccccHHHEEEecCCCeEEEeccchhhcccccc
Confidence            9999999999986  3456999999999999999999999998  999999999999999999999999998765322  


Q ss_pred             ------hhhcccccccCCCC-CCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          531 ------EMAATSKKLSSAPS-ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       531 ------~~~~~~pe~~~~~~-~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                            ...+.+||...+.. .+.++|||||||++|||+||+.||..  ....+.......+...           .+..
T Consensus       172 ~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~--~~~~~~~~~i~~~~~~-----------~p~~  238 (476)
T 2y94_A          172 LRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDD--DHVPTLFKKICDGIFY-----------TPQY  238 (476)
T ss_dssp             BCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCC--SSSHHHHHHHHTTCCC-----------CCTT
T ss_pred             ccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCC--CCHHHHHHHHhcCCcC-----------CCcc
Confidence                  23455677666554 47899999999999999999999953  3333444443332111           1122


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ...++.+++.+||+.||++|||+.|+++
T Consensus       239 ~s~~~~~Li~~~L~~dP~~Rpt~~eil~  266 (476)
T 2y94_A          239 LNPSVISLLKHMLQVDPMKRATIKDIRE  266 (476)
T ss_dssp             CCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CCHHHHHHHHHHcCCCchhCcCHHHHHh
Confidence            2356889999999999999999999987

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=1.9e-36  Score=321.76  Aligned_cols=238  Identities=19%  Similarity=0.215  Sum_probs=184.4

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+++.. +++.||||++......      .+.+.+|+.++++++||||+++++++...+  ..++||
T Consensus        24 ~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~------~~~~~~E~~~l~~l~hpniv~~~~~~~~~~--~~~lv~   95 (361)
T 3uc3_A           24 FVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAI------DENVQREIINHRSLRHPNIVRFKEVILTPT--HLAIIM   95 (361)
T ss_dssp             EEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTS------CHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             EEEEeccCCCEEEEEEEECCCCcEEEEEEEecCccc------cHHHHHHHHHHHhCCCCCCCcEEEEEeeCC--EEEEEE
Confidence            4588999999999999975 6899999998643322      256889999999999999999999998877  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCc--eEecccCchhhhhh-
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA--AKLSDLSFWNEIAM-  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~--~kl~DfGla~~~~~-  529 (664)
                      ||+++|+|.+++..  ...+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.  +||+|||+++.... 
T Consensus        96 e~~~~~~L~~~l~~--~~~~~~~~~~~i~~ql~~~L~~LH~~~--ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~  171 (361)
T 3uc3_A           96 EYASGGELYERICN--AGRFSEDEARFFFQQLLSGVSYCHSMQ--ICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLH  171 (361)
T ss_dssp             ECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHTT--CCSCCCCGGGEEECSSSSCCEEECCCCCC------
T ss_pred             EeCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEEcCCCCceEEEeecCcccccccc
Confidence            99999999999863  346999999999999999999999999  999999999999998775  99999999874321 


Q ss_pred             -------hhhhcccccccCCCCCCcC-CcchhhHHHHHHHHhCCCCccCCC--CChHHHHHHHhcCCCCCccccCCCCCC
Q 006019          530 -------AEMAATSKKLSSAPSASLE-SNVYNFGVLLFEMVTGRLPYLVDN--GSLEDWAADYLSGVQPLQQFVDPTLSS  599 (664)
Q Consensus       530 -------~~~~~~~pe~~~~~~~s~k-sDVySfGvvl~El~tG~~P~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~~~  599 (664)
                             ....+.+||......++.+ +|||||||++|||+||+.||....  ..................     .   
T Consensus       172 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~-----~---  243 (361)
T 3uc3_A          172 SQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVKYSIP-----D---  243 (361)
T ss_dssp             ---------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHHHHHHHTTCCCCC-----T---
T ss_pred             CCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhcCCCCCC-----C---
Confidence                   2234557776655555444 899999999999999999995322  223333333332211111     0   


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          600 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       600 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                       .......+.+++.+||+.||++|||+.|+++.
T Consensus       244 -~~~~s~~~~~li~~~L~~dP~~Rps~~ell~h  275 (361)
T 3uc3_A          244 -DIRISPECCHLISRIFVADPATRISIPEIKTH  275 (361)
T ss_dssp             -TSCCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             -cCCCCHHHHHHHHHHccCChhHCcCHHHHHhC
Confidence             01123568899999999999999999999874

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=1.4e-36  Score=318.45  Aligned_cols=239  Identities=17%  Similarity=0.240  Sum_probs=183.0

Q ss_pred             hhhcccccCCCeEEEEEEE----CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          373 DFSNVIGSSPIGTVYKGTL----SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~----~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      .+.+.||+|+||.||+++.    .+++.+|+|++....... .......+.+|++++++++||||+++++++...+  ..
T Consensus        20 ~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~   96 (327)
T 3a62_A           20 ELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVR-NAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGG--KL   96 (327)
T ss_dssp             EEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC---------------HHHHHHHCCCTTBCCEEEEEECSS--CE
T ss_pred             EEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhh-hhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCC--EE
Confidence            3458899999999999997    478999999986543211 1123456889999999999999999999998877  67


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++||||+++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...
T Consensus        97 ~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~al~~lH~~~--ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~~  172 (327)
T 3a62_A           97 YLILEYLSGGELFMQLER--EGIFMEDTACFYLAEISMALGHLHQKG--IIYRDLKPENIMLNHQGHVKLTDFGLCKESI  172 (327)
T ss_dssp             EEEEECCTTEEHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCTTTEEECTTSCEEECCCSCC----
T ss_pred             EEEEeCCCCCcHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHHHhCC--EEcccCCHHHeEECCCCcEEEEeCCcccccc
Confidence            999999999999999863  346889999999999999999999998  9999999999999999999999999987542


Q ss_pred             h---------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 006019          529 M---------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  599 (664)
Q Consensus       529 ~---------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  599 (664)
                      .         ....+.+||......++.++|||||||++|||+||+.||..  ....+...........           
T Consensus       173 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~--~~~~~~~~~i~~~~~~-----------  239 (327)
T 3a62_A          173 HDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTG--ENRKKTIDKILKCKLN-----------  239 (327)
T ss_dssp             ------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCC--SSHHHHHHHHHHTCCC-----------
T ss_pred             cCCccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCC--CCHHHHHHHHHhCCCC-----------
Confidence            1         12345678877777789999999999999999999999943  3334444444332111           


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCC-----CHHHHHH
Q 006019          600 FDEEQLETLGELIKSCVRADPEKRP-----TMRDIAA  631 (664)
Q Consensus       600 ~~~~~~~~l~~l~~~Cl~~~P~~RP-----s~~ev~~  631 (664)
                      .+......+.+++.+||+.||++||     ++.++++
T Consensus       240 ~p~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~  276 (327)
T 3a62_A          240 LPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQA  276 (327)
T ss_dssp             CCTTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence            1222335688999999999999999     6667664

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=9.9e-37  Score=311.92  Aligned_cols=238  Identities=18%  Similarity=0.329  Sum_probs=190.4

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. ++..||+|++.......  ......+.+|++++++++||||+++++++.+.+  ..++||
T Consensus        13 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   88 (279)
T 3fdn_A           13 IGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK--AGVEHQLRREVEIQSHLRHPNILRLYGYFHDAT--RVYLIL   88 (279)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHH--HTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             EeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccch--hhHHHHHHHHHHHHHcCCCCCCcchhheEecCC--EEEEEE
Confidence            3478999999999999975 46789999986533211  123467899999999999999999999998876  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++|+|.+++...  ..+++..+..++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||++......  
T Consensus        89 e~~~~~~l~~~l~~~--~~~~~~~~~~~~~qi~~~l~~LH~~~--i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~~~  164 (279)
T 3fdn_A           89 EYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRR  164 (279)
T ss_dssp             CCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTTT--CEECCCCGGGEEECTTSCEEECSCCEESCC-----
T ss_pred             ecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCC--EecccCChHhEEEcCCCCEEEEeccccccCCcccc
Confidence            999999999998643  46899999999999999999999998  999999999999999999999999988654322  


Q ss_pred             -----hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 006019          531 -----EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  605 (664)
Q Consensus       531 -----~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  605 (664)
                           ...+.+||......++.++||||||+++|||++|+.||..  ....+...........           .+....
T Consensus       165 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~--~~~~~~~~~~~~~~~~-----------~~~~~~  231 (279)
T 3fdn_A          165 TDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEA--NTYQETYKRISRVEFT-----------FPDFVT  231 (279)
T ss_dssp             ---CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHHTCCC-----------CCTTSC
T ss_pred             cccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCC--CcHHHHHHHHHhCCCC-----------CCCcCC
Confidence                 2345678877777889999999999999999999999942  2333333222221111           122233


Q ss_pred             HHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          606 ETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       606 ~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      ..+.+++.+||+.||++||++.|+++.
T Consensus       232 ~~~~~li~~~l~~~p~~Rps~~e~l~h  258 (279)
T 3fdn_A          232 EGARDLISRLLKHNPSQRPMLREVLEH  258 (279)
T ss_dssp             HHHHHHHHHHCCSSGGGSCCHHHHHHC
T ss_pred             HHHHHHHHHHhccChhhCCCHHHHhhC
Confidence            568899999999999999999999874

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=6.9e-37  Score=318.70  Aligned_cols=248  Identities=19%  Similarity=0.332  Sum_probs=195.8

Q ss_pred             hhcccccCCCeEEEEEEE------CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCc
Q 006019          374 FSNVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPF  446 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~------~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~  446 (664)
                      +.+.||+|+||.||+|+.      .+++.||||.+....    .....+.+.+|+++++++ +||||+++++++...+. 
T Consensus        31 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~-  105 (316)
T 2xir_A           31 LGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA----THSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG-  105 (316)
T ss_dssp             EEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTS-
T ss_pred             eeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCC----CcHHHHHHHHHHHHHHhcccCCCeeeEEEEEecCCC-
Confidence            458999999999999984      346889999986432    233456799999999999 79999999999976542 


Q ss_pred             eeEEEEEecCCCChhhhhcccCC--------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecC
Q 006019          447 TRMMVFEYAPNGTLFEHIHIKES--------------EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE  512 (664)
Q Consensus       447 ~~~lV~Ey~~~GsL~~~l~~~~~--------------~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~  512 (664)
                      ..++||||+++|+|.+++.....              ..+++..+..++.+++.||+|||+.+  |+||||||+||+++.
T Consensus       106 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~--i~H~dikp~Nil~~~  183 (316)
T 2xir_A          106 PLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK--CIHRDLAARNILLSE  183 (316)
T ss_dssp             CCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEECG
T ss_pred             ceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCC--cccccCccceEEECC
Confidence            46899999999999999974432              22889999999999999999999998  999999999999999


Q ss_pred             CCceEecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHH
Q 006019          513 DYAAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAA  580 (664)
Q Consensus       513 ~~~~kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~  580 (664)
                      ++.+||+|||+++.....           ...+.+||......++.++||||||+++|||+| |+.||...... .....
T Consensus       184 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~-~~~~~  262 (316)
T 2xir_A          184 KNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID-EEFCR  262 (316)
T ss_dssp             GGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCS-HHHHH
T ss_pred             CCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccchh-HHHHH
Confidence            999999999998765321           124567787767778999999999999999999 99999543322 12222


Q ss_pred             HHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          581 DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       581 ~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                      ..... ...         ..+......+.+++.+||+.||++||++.++++.|+++...
T Consensus       263 ~~~~~-~~~---------~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~  311 (316)
T 2xir_A          263 RLKEG-TRM---------RAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA  311 (316)
T ss_dssp             HHHHT-CCC---------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HhccC-ccC---------CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhh
Confidence            22221 110         11122235688999999999999999999999999998754

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=3.4e-37  Score=326.09  Aligned_cols=232  Identities=20%  Similarity=0.225  Sum_probs=187.7

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.+.||+|+||.||+|+.. +++.||+|++.......  ....+.+.+|.++++.+ +||||+++++++...+  ..++|
T Consensus        27 ~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~--~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~--~~~lv  102 (353)
T 3txo_A           27 FIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQ--DDDVECTMTEKRILSLARNHPFLTQLFCCFQTPD--RLFFV  102 (353)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHH--HTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS--EEEEE
T ss_pred             EEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcc--hhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCC--EEEEE
Confidence            4588999999999999975 58999999997532111  12345688999999988 6999999999998877  78999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh--
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM--  529 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~--  529 (664)
                      |||+++|+|.+++..  ...+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....  
T Consensus       103 ~E~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~g--ivHrDlkp~NILl~~~g~ikL~DFG~a~~~~~~~  178 (353)
T 3txo_A          103 MEFVNGGDLMFHIQK--SRRFDEARARFYAAEIISALMFLHDKG--IIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNG  178 (353)
T ss_dssp             EECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCCGGGEEECTTSCEEECCCTTCBCSCC--
T ss_pred             EeCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--CcccCCCHHHEEECCCCCEEEccccceeecccCC
Confidence            999999999999864  356999999999999999999999998  99999999999999999999999999875321  


Q ss_pred             -------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          530 -------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       530 -------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                             ....+.+||......++.++|||||||++|||+||+.||.  ..+..+....+......           ++.
T Consensus       179 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~--~~~~~~~~~~i~~~~~~-----------~p~  245 (353)
T 3txo_A          179 VTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFE--AENEDDLFEAILNDEVV-----------YPT  245 (353)
T ss_dssp             -------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSC--CSSHHHHHHHHHHCCCC-----------CCT
T ss_pred             ccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCC--CCCHHHHHHHHHcCCCC-----------CCC
Confidence                   2334567777666668899999999999999999999994  33444444444443211           122


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCH
Q 006019          603 EQLETLGELIKSCVRADPEKRPTM  626 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~  626 (664)
                      .....+.+++.+||+.||++||++
T Consensus       246 ~~~~~~~~li~~lL~~dP~~R~~~  269 (353)
T 3txo_A          246 WLHEDATGILKSFMTKNPTMRLGS  269 (353)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSTTS
T ss_pred             CCCHHHHHHHHHHhhhCHHHccCC
Confidence            233568899999999999999998

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=1.8e-36  Score=318.66  Aligned_cols=253  Identities=22%  Similarity=0.318  Sum_probs=185.1

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHH--HhccCCCcccceEEEEec---CCCcee
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDT--LSKVNHKNFVNLIGFCEE---EEPFTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~--l~~l~H~niv~l~g~~~~---~~~~~~  448 (664)
                      +.+.||+|+||.||+|+. ++..||||++....        ...+..|.++  +..++||||+++++++..   .+....
T Consensus        17 ~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~--------~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~   87 (336)
T 3g2f_A           17 LLELIGRGRYGAVYKGSL-DERPVAVKVFSFAN--------RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEY   87 (336)
T ss_dssp             EEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG--------HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred             eeeecccCCCeEEEEEEE-CCeEEEEEEeeccc--------hhhHHHHHHHHHHHhccCcchhhheecccccccCCCceE
Confidence            448899999999999987 67899999986332        2344445444  556899999999986643   222246


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcC-------CCCeEEeCcCCCCeEecCCCceEeccc
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL-------NPPIAHNYLNSSAVHLTEDYAAKLSDL  521 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~-------~~~ivHrDLk~~NILld~~~~~kl~Df  521 (664)
                      ++||||+++|+|.+++...   ..++..+.+|+.+++.||+|||+.       .+.|+||||||+|||++.++.+||+||
T Consensus        88 ~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DF  164 (336)
T 3g2f_A           88 LLVMEYYPNGSLXKYLSLH---TSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDF  164 (336)
T ss_dssp             EEEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCC
T ss_pred             EEEEecCCCCcHHHHHhhc---ccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEeec
Confidence            8999999999999999633   358999999999999999999988       113999999999999999999999999


Q ss_pred             Cchhhhhh-----------------hhhhcccccccCC-------CCCCcCCcchhhHHHHHHHHhCCCCccCCCCC---
Q 006019          522 SFWNEIAM-----------------AEMAATSKKLSSA-------PSASLESNVYNFGVLLFEMVTGRLPYLVDNGS---  574 (664)
Q Consensus       522 Gla~~~~~-----------------~~~~~~~pe~~~~-------~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~---  574 (664)
                      |+++....                 ....+.+||...+       ..++.++|||||||++|||+||+.|+......   
T Consensus       165 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~  244 (336)
T 3g2f_A          165 GLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEY  244 (336)
T ss_dssp             TTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCC
T ss_pred             cceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHH
Confidence            99975421                 2335567776654       34567899999999999999998876422110   


Q ss_pred             ------------hHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCC
Q 006019          575 ------------LEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  640 (664)
Q Consensus       575 ------------~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~  640 (664)
                                  ..+.......... ....+... .......+..+.+++.+||+.||++|||+.|+++.|++++..-
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~  320 (336)
T 3g2f_A          245 QMAFQTEVGNHPTFEDMQVLVSREK-QRPKFPEA-WKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIW  320 (336)
T ss_dssp             CCTTHHHHCSSCCHHHHHHHHTTSC-CCCCCCTT-CCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCC
T ss_pred             HHhhhcccCCCchHHHHHhhhcccc-cCCCCCcc-cccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHH
Confidence                        0001111111100 01111111 1123346678999999999999999999999999999998653

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=8.8e-37  Score=319.66  Aligned_cols=235  Identities=20%  Similarity=0.315  Sum_probs=177.6

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcccceEEEEecCCCceeEEEEE
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.||+|+||.||+|+.. +++.||||++...        ....+.+|++++++++ ||||+++++++.+..  ..++|||
T Consensus        17 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~--------~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~--~~~lv~e   86 (325)
T 3kn6_A           17 KPLGEGSFSICRKCVHKKSNQAFAVKIISKR--------MEANTQKEITALKLCEGHPNIVKLHEVFHDQL--HTFLVME   86 (325)
T ss_dssp             CCSEEETTEEEEEEEETTTCCEEEEEEEEGG--------GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS--EEEEEEC
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEChh--------hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCC--EEEEEEE
Confidence            67999999999999975 5899999998532        3457889999999997 999999999998876  7799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC---ceEecccCchhhhhh-
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY---AAKLSDLSFWNEIAM-  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~---~~kl~DfGla~~~~~-  529 (664)
                      |+++|+|.+++..  ...+++..+..|+.+++.||+|||+.+  |+||||||+|||++.++   .+||+|||+++.... 
T Consensus        87 ~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~LH~~~--ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~  162 (325)
T 3kn6_A           87 LLNGGELFERIKK--KKHFSETEASYIMRKLVSAVSHMHDVG--VVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPD  162 (325)
T ss_dssp             CCCSCBHHHHHHH--CSCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEEEC----CEEEECCCTTCEECCC-
T ss_pred             ccCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--CeecCCCHHHEEEecCCCcccEEEeccccceecCCC
Confidence            9999999999964  356999999999999999999999998  99999999999998665   899999999875421 


Q ss_pred             --------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCC-----ChHHHHHHHhcCCCCCccccCCC
Q 006019          530 --------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG-----SLEDWAADYLSGVQPLQQFVDPT  596 (664)
Q Consensus       530 --------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~-----~~~~~~~~~~~~~~~~~~~~d~~  596 (664)
                              ....+.+||......++.++|||||||++|||+||+.||.....     ...+.......+......     
T Consensus       163 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----  237 (325)
T 3kn6_A          163 NQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFEG-----  237 (325)
T ss_dssp             ---------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCCCCCS-----
T ss_pred             CCcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCCCCCc-----
Confidence                    13345678888888889999999999999999999999953221     222333333222111000     


Q ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          597 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       597 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                        ......+.++.+++.+||+.||++||++.|+++
T Consensus       238 --~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~  270 (325)
T 3kn6_A          238 --EAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRY  270 (325)
T ss_dssp             --HHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTT
T ss_pred             --ccccCCCHHHHHHHHHHCCCChhHCCCHHHHhc
Confidence              000123457899999999999999999998864

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=2.2e-36  Score=310.61  Aligned_cols=240  Identities=18%  Similarity=0.295  Sum_probs=188.0

Q ss_pred             hhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      .+.+.||+|+||.||+++.. ++..+|+|++......    ...+.+.+|++++++++||||+++++++.+.+  ..++|
T Consensus        25 ~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~----~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~lv   98 (285)
T 3is5_A           25 IFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQ----VPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYH--NMYIV   98 (285)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCC----SCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS--EEEEE
T ss_pred             eecceeccCCCeEEEEEEEccCCceEEEEEeeccccc----hhHHHHHHHHHHHHhCCCchHHhHHHheecCC--eEEEE
Confidence            45589999999999999974 5889999998765432    23467999999999999999999999998776  67999


Q ss_pred             EEecCCCChhhhhccc--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEe---cCCCceEecccCchhh
Q 006019          452 FEYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL---TEDYAAKLSDLSFWNE  526 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILl---d~~~~~kl~DfGla~~  526 (664)
                      |||+++|+|.+++...  ....+++..+..|+.+++.||+|||+.+  |+||||||+||++   +.++.+||+|||+++.
T Consensus        99 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~--ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~  176 (285)
T 3is5_A           99 METCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQH--VVHKDLKPENILFQDTSPHSPIKIIDFGLAEL  176 (285)
T ss_dssp             ECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCSGGGEEESSSSTTCCEEECCCCCCCC
T ss_pred             EEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhCC--EEECCCCHHHEEEecCCCCCCEEEEeeeccee
Confidence            9999999999988532  3467999999999999999999999998  9999999999999   4568899999999976


Q ss_pred             hhh--------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 006019          527 IAM--------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       527 ~~~--------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                      ...        ....+.+||... ..++.++||||||+++|||+||+.||..  ....+.............    ....
T Consensus       177 ~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~--~~~~~~~~~~~~~~~~~~----~~~~  249 (285)
T 3is5_A          177 FKSDEHSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTG--TSLEEVQQKATYKEPNYA----VECR  249 (285)
T ss_dssp             ----------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCCCC----C--C
T ss_pred             cCCcccCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCC--CCHHHHHhhhccCCcccc----cccC
Confidence            532        123456777654 4678999999999999999999999943  333333332222211110    0011


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .    ....+.+++.+||+.||++||++.|+++
T Consensus       250 ~----~~~~~~~li~~~L~~dP~~Rps~~e~l~  278 (285)
T 3is5_A          250 P----LTPQAVDLLKQMLTKDPERRPSAAQVLH  278 (285)
T ss_dssp             C----CCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred             c----CCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            1    2246889999999999999999999875

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=2.8e-36  Score=309.04  Aligned_cols=252  Identities=17%  Similarity=0.270  Sum_probs=197.5

Q ss_pred             hhhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCC-chhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeE
Q 006019          372 EDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDW-PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  449 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~  449 (664)
                      ..+.+.||+|+||.||+|+.. ++..+|+|.+........ .....+.|.+|++++++++||||+++++++.+.+  ..+
T Consensus         7 y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~   84 (283)
T 3bhy_A            7 YEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKT--DVV   84 (283)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EEE
T ss_pred             hhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCC--eEE
Confidence            345588999999999999976 689999999876543221 1123567999999999999999999999998876  679


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC----ceEecccCchh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY----AAKLSDLSFWN  525 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~----~~kl~DfGla~  525 (664)
                      +||||+++++|.+++..  ...+++..+..++.+++.||+|||+.+  ++||||||+||+++.++    .+||+|||+++
T Consensus        85 lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~  160 (283)
T 3bhy_A           85 LILELVSGGELFDFLAE--KESLTEDEATQFLKQILDGVHYLHSKR--IAHFDLKPENIMLLDKNVPNPRIKLIDFGIAH  160 (283)
T ss_dssp             EEEECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEESCSSSSSCCEEECCCTTCE
T ss_pred             EEEeecCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCC--ccCCCCChHHEEEecCCCCCCceEEEecccce
Confidence            99999999999999863  346899999999999999999999998  99999999999999877    89999999987


Q ss_pred             hhhh--------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 006019          526 EIAM--------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  597 (664)
Q Consensus       526 ~~~~--------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  597 (664)
                      ....        ....+.+||......++.++||||||+++|||+||+.||...  ...+...............     
T Consensus       161 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~--~~~~~~~~~~~~~~~~~~~-----  233 (283)
T 3bhy_A          161 KIEAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGE--TKQETLTNISAVNYDFDEE-----  233 (283)
T ss_dssp             ECC--------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCS--SHHHHHHHHHTTCCCCCHH-----
T ss_pred             eccCCCcccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCc--chHHHHHHhHhcccCCcch-----
Confidence            6532        223456788877778899999999999999999999999432  2233332222211111000     


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH--HHHhhhC
Q 006019          598 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA--ILREITG  638 (664)
Q Consensus       598 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~--~L~~i~~  638 (664)
                        .....+..+.+++.+||+.||++||++.++++  .++.+..
T Consensus       234 --~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~~  274 (283)
T 3bhy_A          234 --YFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIRR  274 (283)
T ss_dssp             --HHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHHHHH
T ss_pred             --hcccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHHHHH
Confidence              00112356889999999999999999999997  4555543

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=5.8e-37  Score=314.04  Aligned_cols=241  Identities=19%  Similarity=0.286  Sum_probs=192.5

Q ss_pred             hhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecC--------
Q 006019          373 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEE--------  443 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--------  443 (664)
                      .+.+.||+|+||.||+|+.. +++.||+|.+....         ..+.+|++++++++||||+++++++...        
T Consensus        14 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---------~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~   84 (284)
T 2a19_B           14 KEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN---------EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSS   84 (284)
T ss_dssp             EEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS---------GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-----
T ss_pred             ceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc---------HHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccc
Confidence            34588999999999999976 78999999986432         2467899999999999999999998541        


Q ss_pred             ------CCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceE
Q 006019          444 ------EPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAK  517 (664)
Q Consensus       444 ------~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~k  517 (664)
                            .....++||||+++|+|.+++.......+++..+..++.+++.||+|||+.+  |+||||||+||++++++.+|
T Consensus        85 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--i~H~dlkp~Nil~~~~~~~k  162 (284)
T 2a19_B           85 KNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKK--LINRDLKPSNIFLVDTKQVK  162 (284)
T ss_dssp             ----CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEEETTEEE
T ss_pred             ccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeeccCCHHHEEEcCCCCEE
Confidence                  1124689999999999999997555567999999999999999999999998  99999999999999999999


Q ss_pred             ecccCchhhhhhh--------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCC
Q 006019          518 LSDLSFWNEIAMA--------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL  589 (664)
Q Consensus       518 l~DfGla~~~~~~--------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~  589 (664)
                      |+|||+++.....        ...+.+||......++.++||||||+++|||+||+.|+...    ..+.......    
T Consensus       163 l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~----~~~~~~~~~~----  234 (284)
T 2a19_B          163 IGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFET----SKFFTDLRDG----  234 (284)
T ss_dssp             ECCCTTCEESSCCSCCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHH----HHHHHHHHTT----
T ss_pred             ECcchhheeccccccccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhH----HHHHHHhhcc----
Confidence            9999998765321        23455677777777899999999999999999999987321    1111111111    


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCC
Q 006019          590 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP  641 (664)
Q Consensus       590 ~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~  641 (664)
                            .+   +...+..+.+++.+||+.||++||++.|+++.|+.+.....
T Consensus       235 ------~~---~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~~  277 (284)
T 2a19_B          235 ------II---SDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSPE  277 (284)
T ss_dssp             ------CC---CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC---
T ss_pred             ------cc---cccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCCC
Confidence                  01   11122457899999999999999999999999999876543

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=3.6e-36  Score=307.31  Aligned_cols=246  Identities=17%  Similarity=0.237  Sum_probs=192.3

Q ss_pred             hhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      .+.+.||+|+||.||+|+.. ++..+|+|++.......     .+.+.+|++++++++||||+++++++.+.+  ..++|
T Consensus        12 ~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~-----~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~lv   84 (277)
T 3f3z_A           12 TLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVED-----VDRFKQEIEIMKSLDHPNIIRLYETFEDNT--DIYLV   84 (277)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSC-----HHHHHHHHHHHHTCCCTTBCCEEEEEECSS--EEEEE
T ss_pred             EeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccch-----HHHHHHHHHHHHhCCCCCEeeEEEEEecCC--eEEEE
Confidence            34588999999999999975 46789999987544322     467999999999999999999999998876  67999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEe---cCCCceEecccCchhhhh
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL---TEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILl---d~~~~~kl~DfGla~~~~  528 (664)
                      |||+++|+|.+++..  ...+++..+..|+.+++.||+|||+.+  |+||||||+||++   +.++.+||+|||++....
T Consensus        85 ~e~~~~~~L~~~~~~--~~~~~~~~~~~i~~~i~~~l~~lH~~~--i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~  160 (277)
T 3f3z_A           85 MELCTGGELFERVVH--KRVFRESDAARIMKDVLSAVAYCHKLN--VAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFK  160 (277)
T ss_dssp             EECCCSCBHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEESSSSTTCCEEECCCTTCEECC
T ss_pred             EeccCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--ccCCCCCHHHEEEecCCCCCcEEEEecccceecc
Confidence            999999999998864  345899999999999999999999999  9999999999999   788999999999987553


Q ss_pred             hh--------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 006019          529 MA--------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  600 (664)
Q Consensus       529 ~~--------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  600 (664)
                      ..        ...+.+||.... .++.++||||||+++|||+||+.||..  ....+.......+........   ..  
T Consensus       161 ~~~~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~--~~~~~~~~~~~~~~~~~~~~~---~~--  232 (277)
T 3f3z_A          161 PGKMMRTKVGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVLLCGYPPFSA--PTDSEVMLKIREGTFTFPEKD---WL--  232 (277)
T ss_dssp             TTSCBCCCCSCTTTCCHHHHTT-CBCTTHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCCCCHHH---HT--
T ss_pred             CccchhccCCCCCccChHHhcc-cCCchhhehhHHHHHHHHHHCCCCCCC--CCHHHHHHHHHhCCCCCCchh---hh--
Confidence            22        233456776544 478999999999999999999999943  233333333333211111000   00  


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCCHHHHHH--HHHhhhCC
Q 006019          601 DEEQLETLGELIKSCVRADPEKRPTMRDIAA--ILREITGI  639 (664)
Q Consensus       601 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~--~L~~i~~~  639 (664)
                        ..+..+.+++.+||+.||++||++.++++  .+++....
T Consensus       233 --~~~~~~~~li~~~l~~dp~~R~s~~~~l~h~~~~~~~~~  271 (277)
T 3f3z_A          233 --NVSPQAESLIRRLLTKSPKQRITSLQALEHEWFEKQLSS  271 (277)
T ss_dssp             --TSCHHHHHHHHHHTCSSTTTSCCHHHHTTSHHHHHHHCC
T ss_pred             --cCCHHHHHHHHHHccCChhhCcCHHHHhcCHHHhccccc
Confidence              12356889999999999999999999985  44444443

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=2e-37  Score=336.24  Aligned_cols=246  Identities=19%  Similarity=0.251  Sum_probs=190.9

Q ss_pred             Hhhhh--cccccCCCeEEEEEEECC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCce
Q 006019          371 CEDFS--NVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  447 (664)
Q Consensus       371 ~~~~~--~~iG~G~~G~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  447 (664)
                      +++|.  ++||+|+||.||+|+..+ ++.||+|++.......  ......+.+|+.++..++|||||++++++.+.+  .
T Consensus        73 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~--~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~--~  148 (437)
T 4aw2_A           73 REDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLK--RAETACFREERDVLVNGDSKWITTLHYAFQDDN--N  148 (437)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHH--TTTTCCHHHHHHHHHHSCTTTBCCEEEEEECSS--E
T ss_pred             hhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhh--HHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCC--E
Confidence            34444  889999999999999764 7899999986532111  111234889999999999999999999999877  7


Q ss_pred             eEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhh
Q 006019          448 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~  527 (664)
                      .++|||||++|+|.++++. ....+++..+..++.+++.||+|||+.+  |+||||||+|||+|.++.+||+|||+++..
T Consensus       149 ~~lV~Ey~~gg~L~~~l~~-~~~~l~e~~~~~~~~qi~~aL~~LH~~g--iiHrDLKp~NILl~~~g~vkL~DFGla~~~  225 (437)
T 4aw2_A          149 LYLVMDYYVGGDLLTLLSK-FEDRLPEEMARFYLAEMVIAIDSVHQLH--YVHRDIKPDNILMDMNGHIRLADFGSCLKL  225 (437)
T ss_dssp             EEEEECCCTTCBHHHHHHT-TTTCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             EEEEEecCCCCcHHHHHHH-ccCCCCHHHHHHHHHHHHHHHHHHHhCC--eEecccCHHHeeEcCCCCEEEcchhhhhhc
Confidence            8999999999999999963 2456999999999999999999999999  999999999999999999999999998754


Q ss_pred             hh----------hhhhcccccccC-----CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccc
Q 006019          528 AM----------AEMAATSKKLSS-----APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQF  592 (664)
Q Consensus       528 ~~----------~~~~~~~pe~~~-----~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~  592 (664)
                      ..          ....+.+||...     ...++.++|||||||++|||+||+.||..  .+..+....++......   
T Consensus       226 ~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~--~~~~~~~~~i~~~~~~~---  300 (437)
T 4aw2_A          226 MEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYA--ESLVETYGKIMNHKERF---  300 (437)
T ss_dssp             CTTSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHTHHHHC---
T ss_pred             ccCCCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCC--CChhHHHHhhhhccccc---
Confidence            22          233456777654     45688999999999999999999999943  33344333333211100   


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhccCCCCC--CCCHHHHHH
Q 006019          593 VDPTLSSFDEEQLETLGELIKSCVRADPEK--RPTMRDIAA  631 (664)
Q Consensus       593 ~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~--RPs~~ev~~  631 (664)
                      .-|.   .......++.+++.+|+..+|++  ||+++|+++
T Consensus       301 ~~p~---~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~  338 (437)
T 4aw2_A          301 QFPT---QVTDVSENAKDLIRRLICSREHRLGQNGIEDFKK  338 (437)
T ss_dssp             CCCS---SCCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHT
T ss_pred             cCCc---ccccCCHHHHHHHHHHhcccccccCCCCHHHHhC
Confidence            0011   11112356889999999888888  999998876

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=2e-36  Score=325.94  Aligned_cols=238  Identities=17%  Similarity=0.265  Sum_probs=183.5

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHh-ccCCCcccceEEEEec--CCCceeEEE
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLS-KVNHKNFVNLIGFCEE--EEPFTRMMV  451 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~-~l~H~niv~l~g~~~~--~~~~~~~lV  451 (664)
                      +.||+|+||.||+|+.. ++..||||++..          ...+.+|++++. ..+||||+++++++..  .+....++|
T Consensus        68 ~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~----------~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~lv  137 (400)
T 1nxk_A           68 QVLGLGINGKVLQIFNKRTQEKFALKMLQD----------CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIV  137 (400)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEC----------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEE
T ss_pred             ceeeeccCeEEEEEEECCCCCEEEEEEeCc----------chhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEEE
Confidence            67999999999999975 588999999852          135778888874 4589999999999864  122257999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecC---CCceEecccCchhhhh
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE---DYAAKLSDLSFWNEIA  528 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~---~~~~kl~DfGla~~~~  528 (664)
                      ||||++|+|.+++.......+++..+..|+.+++.||+|||+.+  |+||||||+|||++.   ++.+||+|||+++...
T Consensus       138 ~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~  215 (400)
T 1nxk_A          138 MECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSIN--IAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT  215 (400)
T ss_dssp             EECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEESSSSTTCCEEECCCTTCEECC
T ss_pred             EEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCcCcceEEEecCCCCccEEEEecccccccC
Confidence            99999999999997655567999999999999999999999998  999999999999998   7899999999987653


Q ss_pred             h--------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCCh--HHHHHHHhcCCCCCccccCCCCC
Q 006019          529 M--------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSL--EDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       529 ~--------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                      .        ....+.+||......++.++|||||||++|||+||+.||.......  .........+....   ..+.. 
T Consensus       216 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~~~~---~~~~~-  291 (400)
T 1nxk_A          216 SHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEF---PNPEW-  291 (400)
T ss_dssp             -----------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTCCCC---CTTTT-
T ss_pred             CCCccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCcccC---CCccc-
Confidence            2        1334678998888889999999999999999999999995432210  01111111111111   11111 


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                         .....++.+++.+||+.||++||++.|+++.
T Consensus       292 ---~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h  322 (400)
T 1nxk_A          292 ---SEVSEEVKMLIRNLLKTEPTQRMTITEFMNH  322 (400)
T ss_dssp             ---TTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             ---ccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence               1233568899999999999999999999874

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=3.1e-37  Score=332.30  Aligned_cols=239  Identities=18%  Similarity=0.218  Sum_probs=187.8

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      +.||+|+||.||+|+.. ++..+|+|++.......  ....+.+.+|+++++.++|||||++++++.+.+  ..++||||
T Consensus        75 ~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~--~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~--~~~lV~E~  150 (410)
T 3v8s_A           75 KVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIK--RSDSAFFWEERDIMAFANSPWVVQLFYAFQDDR--YLYMVMEY  150 (410)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHH--TCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSS--EEEEEECC
T ss_pred             EEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhh--hHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECC--EEEEEEeC
Confidence            78999999999999976 58899999986522110  011235889999999999999999999998877  78999999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh-----
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM-----  529 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~-----  529 (664)
                      +++|+|.++++.   ..+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....     
T Consensus       151 ~~gg~L~~~l~~---~~~~e~~~~~~~~qi~~aL~~LH~~g--ivHrDLKp~NILl~~~g~ikL~DFG~a~~~~~~~~~~  225 (410)
T 3v8s_A          151 MPGGDLVNLMSN---YDVPEKWARFYTAEVVLALDAIHSMG--FIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVR  225 (410)
T ss_dssp             CTTEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTSCEEECCCTTCEECCTTSEEE
T ss_pred             CCCCcHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCC--eEeccCCHHHeeECCCCCEEEeccceeEeeccCCccc
Confidence            999999999863   35899999999999999999999999  99999999999999999999999999976532     


Q ss_pred             -----hhhhcccccccCCCC----CCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 006019          530 -----AEMAATSKKLSSAPS----ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  600 (664)
Q Consensus       530 -----~~~~~~~pe~~~~~~----~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  600 (664)
                           ....+.+||......    ++.++|||||||++|||+||+.||..  .+..+....++......   .-+...  
T Consensus       226 ~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~--~~~~~~~~~i~~~~~~~---~~p~~~--  298 (410)
T 3v8s_A          226 CDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYA--DSLVGTYSKIMNHKNSL---TFPDDN--  298 (410)
T ss_dssp             CCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHTHHHHC---CCCTTC--
T ss_pred             ccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCC--CChhhHHHHHHhccccc---cCCCcc--
Confidence                 233455777654433    77899999999999999999999943  33444444443321111   011111  


Q ss_pred             CHHHHHHHHHHHHHhccCCCCC--CCCHHHHHHH
Q 006019          601 DEEQLETLGELIKSCVRADPEK--RPTMRDIAAI  632 (664)
Q Consensus       601 ~~~~~~~l~~l~~~Cl~~~P~~--RPs~~ev~~~  632 (664)
                        ....++.+++.+|++.+|.+  ||++.||++.
T Consensus       299 --~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~H  330 (410)
T 3v8s_A          299 --DISKEAKNLICAFLTDREVRLGRNGVEEIKRH  330 (410)
T ss_dssp             --CCCHHHHHHHHHHSSCGGGCTTSSCHHHHHTS
T ss_pred             --cccHHHHHHHHHHccChhhhCCCCCHHHHhcC
Confidence              12356889999999999988  9999998863

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=4.8e-36  Score=306.02  Aligned_cols=238  Identities=19%  Similarity=0.271  Sum_probs=190.3

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. ++..||+|++......    ...+.+.+|++++++++||||+++++++.+.+  ..++|+
T Consensus        11 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   84 (276)
T 2yex_A           11 LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAV----DCPENIKKEICINKMLNHENVVKFYGHRREGN--IQYLFL   84 (276)
T ss_dssp             EEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCT----THHHHHHHHHHHHHTCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             EEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccch----hhhHHHHHHHHHHHhcCCCCceeeeeEEEcCC--EEEEEE
Confidence            4588999999999999975 6899999998754432    24577999999999999999999999998876  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++|+|.+++.  ....+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++....   
T Consensus        85 e~~~~~~L~~~l~--~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~  160 (276)
T 2yex_A           85 EYCSGGELFDRIE--PDIGMPEPDAQRFFHQLMAGVVYLHGIG--ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNR  160 (276)
T ss_dssp             ECCTTEEGGGGSB--TTTBCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECTTCCEEECCCTTCEECEETTE
T ss_pred             EecCCCcHHHHHh--hccCCCHHHHHHHHHHHHHHHHHHHhCC--eeccCCChHHEEEccCCCEEEeeCCCccccCCCcc
Confidence            9999999999986  3456999999999999999999999998  99999999999999999999999999875421   


Q ss_pred             --------hhhhcccccccCCCCC-CcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 006019          530 --------AEMAATSKKLSSAPSA-SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  600 (664)
Q Consensus       530 --------~~~~~~~pe~~~~~~~-s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  600 (664)
                              ....+.+||....... +.++||||||+++|||+||+.||.........+.. ........         ..
T Consensus       161 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~-~~~~~~~~---------~~  230 (276)
T 2yex_A          161 ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSD-WKEKKTYL---------NP  230 (276)
T ss_dssp             ECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHH-HHTTCTTS---------TT
T ss_pred             hhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHH-hhhccccc---------Cc
Confidence                    1234567887765554 77899999999999999999999644332222211 11111100         01


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          601 DEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       601 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .......+.+++.+||+.||++||++.|+++
T Consensus       231 ~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  261 (276)
T 2yex_A          231 WKKIDSAPLALLHKILVENPSARITIPDIKK  261 (276)
T ss_dssp             GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             hhhcCHHHHHHHHHHCCCCchhCCCHHHHhc
Confidence            1223356889999999999999999998876

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=7.9e-37  Score=313.41  Aligned_cols=236  Identities=16%  Similarity=0.244  Sum_probs=186.6

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.+.||+|+||.||+|+.. ++..||+|.+......   .....++.+|+..+.++ +||||+++++++.+.+  ..++|
T Consensus        15 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~--~~~lv   89 (289)
T 1x8b_A           15 ELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAG---SVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDD--HMLIQ   89 (289)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTT---SHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETT--EEEEE
T ss_pred             hhhhhcCCCceEEEEEEEcCCCceEEEEEecccccc---cHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCC--eEEEE
Confidence            4488999999999999976 6899999998754332   23457789999999999 9999999999998877  77999


Q ss_pred             EEecCCCChhhhhcccC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecC-----------------
Q 006019          452 FEYAPNGTLFEHIHIKE--SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE-----------------  512 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~--~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~-----------------  512 (664)
                      |||+++|+|.+++....  ...+++..+..|+.+++.||+|||+.+  |+||||||+|||++.                 
T Consensus        90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~--ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~  167 (289)
T 1x8b_A           90 NEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMS--LVHMDIKPSNIFISRTSIPNAASEEGDEDDWA  167 (289)
T ss_dssp             EECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEC------------------
T ss_pred             EEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCC--EeecCCCHHHEEEcCCCCCccccccccccccc
Confidence            99999999999986432  256899999999999999999999998  999999999999984                 


Q ss_pred             --CCceEecccCchhhhhh-----hhhhcccccccCCC-CCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhc
Q 006019          513 --DYAAKLSDLSFWNEIAM-----AEMAATSKKLSSAP-SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLS  584 (664)
Q Consensus       513 --~~~~kl~DfGla~~~~~-----~~~~~~~pe~~~~~-~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~  584 (664)
                        +..+||+|||+++....     ....+.+||..... .++.++|||||||++|||++|+.|+...  .  .+ .....
T Consensus       168 ~~~~~~kl~Dfg~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~--~--~~-~~~~~  242 (289)
T 1x8b_A          168 SNKVMFKIGDLGHVTRISSPQVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNG--D--QW-HEIRQ  242 (289)
T ss_dssp             --CCCEEECCCTTCEETTCSCCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSS--H--HH-HHHHT
T ss_pred             CCceEEEEcccccccccCCccccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcch--h--HH-HHHHc
Confidence              44799999999876642     23345677766544 5668999999999999999998776221  1  11 11111


Q ss_pred             CCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          585 GVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       585 ~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      +          .....+...+..+.+++.+||+.||++||++.|+++
T Consensus       243 ~----------~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  279 (289)
T 1x8b_A          243 G----------RLPRIPQVLSQEFTELLKVMIHPDPERRPSAMALVK  279 (289)
T ss_dssp             T----------CCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             C----------CCCCCCcccCHHHHHHHHHHhCCCcccCCCHHHHhh
Confidence            1          111122223456899999999999999999999875

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=2.7e-36  Score=314.40  Aligned_cols=238  Identities=19%  Similarity=0.305  Sum_probs=182.5

Q ss_pred             cccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeEEEEE
Q 006019          376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.||+|+||.||+|+. .+++.||||++.....     ...+.+.+|++++.++ +||||+++++++.+.+  ..++|||
T Consensus        19 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~--~~~lv~e   91 (316)
T 2ac3_A           19 DVLGEGAHARVQTCINLITSQEYAVKIIEKQPG-----HIRSRVFREVEMLYQCQGHRNVLELIEFFEEED--RFYLVFE   91 (316)
T ss_dssp             CCCCCCSSEEEEEEECSSSCCEEEEEEEECCSS-----CCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETT--EEEEEEE
T ss_pred             ceecCCceEEEEEEEEcCCCcEEEEEEEeeCcc-----hhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCC--EEEEEEE
Confidence            5799999999999995 4689999999865432     2346789999999985 7999999999998877  7799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCc---eEecccCchhhhhh-
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA---AKLSDLSFWNEIAM-  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~---~kl~DfGla~~~~~-  529 (664)
                      |+++|+|.+++...  ..+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.   +||+|||+++.... 
T Consensus        92 ~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~--ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~  167 (316)
T 2ac3_A           92 KMRGGSILSHIHKR--RHFNELEASVVVQDVASALDFLHNKG--IAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLN  167 (316)
T ss_dssp             CCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEESCSSSSCSEEECCTTCCC-----
T ss_pred             cCCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHhCC--ceeCCCCHHHEEEccCCCcCceEEEEccCccccccC
Confidence            99999999998643  46899999999999999999999998  999999999999998776   99999999875431 


Q ss_pred             ---------------hhhhcccccccCC-----CCCCcCCcchhhHHHHHHHHhCCCCccCCCCCh-------------H
Q 006019          530 ---------------AEMAATSKKLSSA-----PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSL-------------E  576 (664)
Q Consensus       530 ---------------~~~~~~~pe~~~~-----~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~-------------~  576 (664)
                                     ....+.+||....     ..++.++|||||||++|||+||+.||.......             .
T Consensus       168 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~  247 (316)
T 2ac3_A          168 GDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQN  247 (316)
T ss_dssp             --------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHH
T ss_pred             CccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHHH
Confidence                           1234556665532     346789999999999999999999996432211             1


Q ss_pred             HHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          577 DWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       577 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ................   ..    ......+.+++.+||+.||++||++.|+++
T Consensus       248 ~~~~~i~~~~~~~~~~---~~----~~~~~~~~~li~~~L~~dP~~Rps~~e~l~  295 (316)
T 2ac3_A          248 MLFESIQEGKYEFPDK---DW----AHISCAAKDLISKLLVRDAKQRLSAAQVLQ  295 (316)
T ss_dssp             HHHHHHHHCCCCCCHH---HH----TTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             HHHHHHhccCcccCch---hc----ccCCHHHHHHHHHHhhCChhhCCCHHHHhc
Confidence            1111211111110000   00    112356889999999999999999999877

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=1.4e-36  Score=325.51  Aligned_cols=234  Identities=20%  Similarity=0.240  Sum_probs=185.6

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.+.||+|+||.||+|+.. +++.+|+|++.......  ....+.+.+|..++.++ +|||||++++++.+.+  ..++|
T Consensus        56 ~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~--~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~--~~~lV  131 (396)
T 4dc2_A           56 LLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVND--DEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTES--RLFFV  131 (396)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC------CCHHHHHHHHHHHHTTCTTBCCEEEEEECSS--EEEEE
T ss_pred             EEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccC--HHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECC--EEEEE
Confidence            3488999999999999975 57899999997654322  12234588899999887 8999999999998877  78999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh---
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA---  528 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~---  528 (664)
                      |||+++|+|.+++..  ...+++..+..++.+|+.||+|||+.+  |+||||||+|||++.++.+||+|||+++...   
T Consensus       132 ~E~~~gg~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~LH~~g--ivHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~  207 (396)
T 4dc2_A          132 IEYVNGGDLMFHMQR--QRKLPEEHARFYSAEISLALNYLHERG--IIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPG  207 (396)
T ss_dssp             EECCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTT
T ss_pred             EEcCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--EEeccCCHHHEEECCCCCEEEeecceeeecccCC
Confidence            999999999998863  356999999999999999999999999  9999999999999999999999999987531   


Q ss_pred             ------hhhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCC------CChHHHH-HHHhcCCCCCccccCC
Q 006019          529 ------MAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDN------GSLEDWA-ADYLSGVQPLQQFVDP  595 (664)
Q Consensus       529 ------~~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~------~~~~~~~-~~~~~~~~~~~~~~d~  595 (664)
                            ..+..+.+||......++.++|||||||++|||+||+.||....      ....+.. ........        
T Consensus       208 ~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~--------  279 (396)
T 4dc2_A          208 DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQI--------  279 (396)
T ss_dssp             CCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCCC--------
T ss_pred             CccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhcccc--------
Confidence                  12345667888888889999999999999999999999995321      1111222 22222111        


Q ss_pred             CCCCCCHHHHHHHHHHHHHhccCCCCCCCCH
Q 006019          596 TLSSFDEEQLETLGELIKSCVRADPEKRPTM  626 (664)
Q Consensus       596 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~  626 (664)
                         .++.....++.+++.+||+.||++||++
T Consensus       280 ---~~p~~~s~~~~~li~~lL~~dP~~R~~~  307 (396)
T 4dc2_A          280 ---RIPRSLSVKAASVLKSFLNKDPKERLGC  307 (396)
T ss_dssp             ---CCCTTSCHHHHHHHHHHTCSCTTTSTTC
T ss_pred             ---CCCCcCCHHHHHHHHHHhcCCHhHcCCC
Confidence               1222334568899999999999999996

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=3.6e-36  Score=308.41  Aligned_cols=240  Identities=19%  Similarity=0.254  Sum_probs=192.1

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|... ++..||+|++......   ....+.+.+|++++++++||||+++++++...+  ..++||
T Consensus        10 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~~v~   84 (284)
T 3kk8_A           10 VKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLS---ARDFQKLEREARICRKLQHPNIVRLHDSIQEES--FHYLVF   84 (284)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCC---HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             hhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCC---HHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCC--EEEEEE
Confidence            3478999999999999975 5889999998754432   344567899999999999999999999998776  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCc---eEecccCchhhhhh
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA---AKLSDLSFWNEIAM  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~---~kl~DfGla~~~~~  529 (664)
                      ||+++|+|.+++...  ..+++..+..++.+++.||+|||+.+  |+||||||+||+++.++.   +||+|||++.....
T Consensus        85 e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~  160 (284)
T 3kk8_A           85 DLVTGGELFEDIVAR--EFYSEADASHCIQQILESIAYCHSNG--IVHRNLKPENLLLASKAKGAAVKLADFGLAIEVND  160 (284)
T ss_dssp             CCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEESSSSTTCCEEECCCTTCEECCS
T ss_pred             ecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCC--cCcCCCCHHHEEEecCCCCCcEEEeeceeeEEccc
Confidence            999999999888643  46899999999999999999999999  999999999999987655   99999999865532


Q ss_pred             --------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 006019          530 --------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  601 (664)
Q Consensus       530 --------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  601 (664)
                              ....+.+||......++.++||||||+++|||++|+.||..  ....+.......+....   ..+....  
T Consensus       161 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~--~~~~~~~~~~~~~~~~~---~~~~~~~--  233 (284)
T 3kk8_A          161 SEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWD--EDQHRLYAQIKAGAYDY---PSPEWDT--  233 (284)
T ss_dssp             SCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHTCCCC---CTTTTTT--
T ss_pred             CccccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCC--CchhHHHHHHHhccccC---Cchhhcc--
Confidence                    22345678887777889999999999999999999999943  33333333333221111   1111112  


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          602 EEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       602 ~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                        ...++.+++.+||+.||++||++.|+++
T Consensus       234 --~~~~~~~li~~~l~~dp~~Rps~~~~l~  261 (284)
T 3kk8_A          234 --VTPEAKSLIDSMLTVNPKKRITADQALK  261 (284)
T ss_dssp             --SCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             --cCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence              2356889999999999999999999987

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=5e-36  Score=308.51  Aligned_cols=242  Identities=23%  Similarity=0.341  Sum_probs=189.9

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecC--CCceeEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEE--EPFTRMM  450 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~~~l  450 (664)
                      +.+.||+|+||.||+|... ++..||+|.+......   ....+.|.+|++++++++||||+++++++...  +....++
T Consensus        30 ~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l  106 (290)
T 1t4h_A           30 FDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLT---KSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL  106 (290)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC---HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEE
T ss_pred             eeeeccCCCCeEEEEeEecCCceEEEEEEecchhhC---HHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEE
Confidence            3468999999999999974 5788999988754322   34567899999999999999999999998653  1225799


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEec-CCCceEecccCchhhhhh
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT-EDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld-~~~~~kl~DfGla~~~~~  529 (664)
                      ||||+++|+|.+++..  ...+++..+..++.+++.||+|||+.+++|+||||||+|||++ .++.+||+|||++.....
T Consensus       107 v~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~~  184 (290)
T 1t4h_A          107 VTELMTSGTLKTYLKR--FKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA  184 (290)
T ss_dssp             EEECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCT
T ss_pred             EEEecCCCCHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHHcCCCCEEECCCCHHHEEEECCCCCEEEeeCCCcccccc
Confidence            9999999999999964  3568999999999999999999999877799999999999998 789999999999875432


Q ss_pred             h-------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          530 A-------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       530 ~-------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                      .       ...+.+||... ..++.++||||||+++|||+||+.||... ....+...........  ..       .+.
T Consensus       185 ~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~pf~~~-~~~~~~~~~~~~~~~~--~~-------~~~  253 (290)
T 1t4h_A          185 SFAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSEC-QNAAQIYRRVTSGVKP--AS-------FDK  253 (290)
T ss_dssp             TSBEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTC-SSHHHHHHHHTTTCCC--GG-------GGG
T ss_pred             cccccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhCCCCCCCc-CcHHHHHHHHhccCCc--cc-------cCC
Confidence            2       23455777665 45889999999999999999999999432 3333333333322111  01       111


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          603 EQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ....++.+++.+||+.||++||++.|+++
T Consensus       254 ~~~~~l~~li~~~l~~dp~~Rps~~ell~  282 (290)
T 1t4h_A          254 VAIPEVKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             CCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CCCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence            12246889999999999999999999875

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=4.3e-36  Score=314.75  Aligned_cols=241  Identities=17%  Similarity=0.216  Sum_probs=192.0

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcccceEEEEecCCCceeEEEEE
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.||+|+||.||+|+.. +++.||+|++......   .....++.+|+.++.+++ ||||+++++++...+  ..++|||
T Consensus        35 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~--~~~lv~e  109 (327)
T 3lm5_A           35 KELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRG---QDCRAEILHEIAVLELAKSCPRVINLHEVYENTS--EIILILE  109 (327)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEESEETT---EECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS--EEEEEEE
T ss_pred             ceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcc---hHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCC--eEEEEEE
Confidence            78999999999999975 5899999998754432   223567999999999995 699999999998776  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecC---CCceEecccCchhhhhhh
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE---DYAAKLSDLSFWNEIAMA  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~---~~~~kl~DfGla~~~~~~  530 (664)
                      |+++|+|.+++.......+++..+..++.+++.||+|||+.+  |+||||||+|||++.   ++.+||+|||+++.....
T Consensus       110 ~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~g--ivH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~  187 (327)
T 3lm5_A          110 YAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNN--IVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHA  187 (327)
T ss_dssp             CCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEESCBTTBCCEEECCGGGCEEC---
T ss_pred             ecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCC--eecCcCChHHEEEecCCCCCcEEEeeCccccccCCc
Confidence            999999999987555678999999999999999999999998  999999999999998   789999999998765322


Q ss_pred             --------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          531 --------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       531 --------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                              ...+.+||......++.++||||||+++|||+||+.||...  ...+............   ..+.    ..
T Consensus       188 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~--~~~~~~~~i~~~~~~~---~~~~----~~  258 (327)
T 3lm5_A          188 CELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGE--DNQETYLNISQVNVDY---SEET----FS  258 (327)
T ss_dssp             ------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHTCCCC---CTTT----TT
T ss_pred             cccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCC--CchHHHHHHHhccccc---Cchh----hc
Confidence                    33456788888888899999999999999999999999432  2222222222211111   1111    12


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          603 EQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      .....+.+++.+||+.||++||++.++++.
T Consensus       259 ~~~~~~~~li~~~L~~dP~~Rpt~~~ll~h  288 (327)
T 3lm5_A          259 SVSQLATDFIQSLLVKNPEKRPTAEICLSH  288 (327)
T ss_dssp             TSCHHHHHHHHHHSCSSGGGSCCHHHHTTC
T ss_pred             ccCHHHHHHHHHHcCCChhhCcCHHHHhCC
Confidence            233568899999999999999999998763

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=2.8e-36  Score=311.04  Aligned_cols=238  Identities=16%  Similarity=0.241  Sum_probs=192.6

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. ++..+|+|.+.......  ....+.+.+|++++++++||||+++++++.+.+  ..++||
T Consensus        19 ~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~   94 (294)
T 2rku_A           19 RGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLK--PHQREKMSMEISIHRSLAHQHVVGFHGFFEDND--FVFVVL   94 (294)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCS--HHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             EEEEEeecCCEEEEEEEECCCCceEEEEEechhhccC--HHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCC--EEEEEE
Confidence            3478999999999999976 47889999987544322  345677999999999999999999999998876  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++++|.+++..  ...+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++.....  
T Consensus        95 e~~~~~~L~~~~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~~--i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~  170 (294)
T 2rku_A           95 ELCRRRSLLELHKR--RKALTEPEARYYLRQIVLGCQYLHRNR--VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE  170 (294)
T ss_dssp             ECCTTCBHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECTTCCEEECCCTTCEECCSTTC
T ss_pred             ecCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCChHhEEEcCCCCEEEEeccCceecccCcc
Confidence            99999999998753  346899999999999999999999998  999999999999999999999999998765311  


Q ss_pred             -------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          531 -------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       531 -------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                             ...+.+||......++.++||||||+++|||+||+.||..  ....+...........           .+..
T Consensus       171 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~--~~~~~~~~~~~~~~~~-----------~~~~  237 (294)
T 2rku_A          171 RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFET--SCLKETYLRIKKNEYS-----------IPKH  237 (294)
T ss_dssp             CBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHTTCCC-----------CCTT
T ss_pred             ccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHhhccCC-----------Cccc
Confidence                   2235567777777788999999999999999999999943  3333333332222111           1122


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      ....+.+++.+||+.||++||++.|+++.
T Consensus       238 ~~~~~~~li~~~l~~~p~~Rps~~~ll~~  266 (294)
T 2rku_A          238 INPVAASLIQKMLQTDPTARPTINELLND  266 (294)
T ss_dssp             SCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred             cCHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence            23568899999999999999999999874

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=1.5e-36  Score=318.09  Aligned_cols=247  Identities=21%  Similarity=0.296  Sum_probs=193.6

Q ss_pred             hhhcccccCCCeEEEEEEE------CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCc
Q 006019          373 DFSNVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF  446 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~------~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  446 (664)
                      .+.+.||+|+||.||+|++      .++..||||.+....    ......+|.+|+.++++++||||+++++++.+.+  
T Consensus        33 ~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--  106 (327)
T 2yfx_A           33 TLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVC----SEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL--  106 (327)
T ss_dssp             EEEEECC--CSSCEEEEEC--------CCEEEEEECCSSC----CHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS--
T ss_pred             EEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEecccc----chhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCC--
Confidence            3458899999999999984      246789999985321    2345568999999999999999999999998876  


Q ss_pred             eeEEEEEecCCCChhhhhcccC-----CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecC---CCceEe
Q 006019          447 TRMMVFEYAPNGTLFEHIHIKE-----SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE---DYAAKL  518 (664)
Q Consensus       447 ~~~lV~Ey~~~GsL~~~l~~~~-----~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~---~~~~kl  518 (664)
                      ..++||||+++|+|.+++....     ...+++..+..++.+++.||+|||+.+  |+||||||+|||++.   +..+||
T Consensus       107 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~--i~H~dlkp~NIli~~~~~~~~~kl  184 (327)
T 2yfx_A          107 PRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENH--FIHRDIAARNCLLTCPGPGRVAKI  184 (327)
T ss_dssp             SCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEESCSSTTCCEEE
T ss_pred             CcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhCC--eecCcCCHhHEEEecCCCcceEEE
Confidence            5699999999999999997542     245899999999999999999999998  999999999999994   456999


Q ss_pred             cccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCC
Q 006019          519 SDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGV  586 (664)
Q Consensus       519 ~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~  586 (664)
                      +|||+++.....           ...+.+||......++.++||||||+++|||+| |+.||..  ....+.........
T Consensus       185 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~--~~~~~~~~~~~~~~  262 (327)
T 2yfx_A          185 GDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPS--KSNQEVLEFVTSGG  262 (327)
T ss_dssp             CCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTT--CCHHHHHHHHHTTC
T ss_pred             CccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCC--cCHHHHHHHHhcCC
Confidence            999998755321           224567787766778999999999999999999 9999843  23333333332221


Q ss_pred             CCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          587 QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       587 ~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                      .          ...+..++..+.+++.+||+.||++||++.++++.|+.+...
T Consensus       263 ~----------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~  305 (327)
T 2yfx_A          263 R----------MDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD  305 (327)
T ss_dssp             C----------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             C----------CCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcC
Confidence            1          111222345688999999999999999999999999988653

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=1.6e-36  Score=311.27  Aligned_cols=237  Identities=16%  Similarity=0.286  Sum_probs=191.5

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. ++..||+|.+.......  ....+.+.+|++++++++||||+++++++.+.+  ..++||
T Consensus        18 ~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   93 (284)
T 2vgo_A           18 IGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEK--EGVEHQLRREIEIQSHLRHPNILRMYNYFHDRK--RIYLML   93 (284)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHH--TTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             eeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccch--HHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCC--EEEEEE
Confidence            4488999999999999975 57889999986532211  123467999999999999999999999998876  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++|+|.+++...  ..+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||++.....   
T Consensus        94 e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~  169 (284)
T 2vgo_A           94 EFAPRGELYKELQKH--GRFDEQRSATFMEELADALHYCHERK--VIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRR  169 (284)
T ss_dssp             CCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTTT--EECCCCSGGGEEECTTCCEEECCCTTCEECSSSCB
T ss_pred             EeCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCC--ceecCCCHHHEEEcCCCCEEEecccccccCccccc
Confidence            999999999998643  46899999999999999999999998  99999999999999999999999998865432   


Q ss_pred             ----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 006019          530 ----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  605 (664)
Q Consensus       530 ----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  605 (664)
                          ....+.+||......++.++||||||+++|||+||+.||..  ....+..........           .++....
T Consensus       170 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~--~~~~~~~~~~~~~~~-----------~~~~~~~  236 (284)
T 2vgo_A          170 RTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDS--PSHTETHRRIVNVDL-----------KFPPFLS  236 (284)
T ss_dssp             CCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHTTCC-----------CCCTTSC
T ss_pred             ccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCC--CCHhHHHHHHhcccc-----------CCCCcCC
Confidence                23345678887777889999999999999999999999943  233333333322211           1122233


Q ss_pred             HHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          606 ETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       606 ~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ..+.+++.+||+.||++||++.++++
T Consensus       237 ~~~~~li~~~l~~~p~~Rps~~~ll~  262 (284)
T 2vgo_A          237 DGSKDLISKLLRYHPPQRLPLKGVME  262 (284)
T ss_dssp             HHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             HHHHHHHHHHhhcCHhhCCCHHHHhh
Confidence            56889999999999999999999986

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=7.3e-37  Score=322.41  Aligned_cols=236  Identities=19%  Similarity=0.247  Sum_probs=190.2

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.+.||+|+||.||+|+.. +|+.||+|++.......  ....+.+..|.+++..+ +||||+++++++.+.+  ..++|
T Consensus        21 ~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~--~~~lv   96 (345)
T 1xjd_A           21 LHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLM--DDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKE--NLFFV   96 (345)
T ss_dssp             EEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHH--TTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSS--EEEEE
T ss_pred             EEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhh--hhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCC--EEEEE
Confidence            3488999999999999975 58899999997543111  11245678899999887 9999999999998877  77999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh--
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM--  529 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~--  529 (664)
                      |||+++|+|.+++..  ...+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....  
T Consensus        97 ~E~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~~--ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~  172 (345)
T 1xjd_A           97 MEYLNGGDLMYHIQS--CHKFDLSRATFYAAEIILGLQFLHSKG--IVYRDLKLDNILLDKDGHIKIADFGMCKENMLGD  172 (345)
T ss_dssp             EECCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTT
T ss_pred             EeCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eEeCCCChhhEEECCCCCEEEeEChhhhhcccCC
Confidence            999999999999864  346899999999999999999999998  99999999999999999999999999875421  


Q ss_pred             -------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          530 -------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       530 -------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                             ....+.+||......++.++|||||||++|||+||+.||..  .+..+...........           ++.
T Consensus       173 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~--~~~~~~~~~i~~~~~~-----------~p~  239 (345)
T 1xjd_A          173 AKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHG--QDEEELFHSIRMDNPF-----------YPR  239 (345)
T ss_dssp             CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCC-----------CCT
T ss_pred             CcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCC--CCHHHHHHHHHhCCCC-----------CCc
Confidence                   23456678887777889999999999999999999999943  3334444443332111           122


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHH-HHH
Q 006019          603 EQLETLGELIKSCVRADPEKRPTMR-DIA  630 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~~-ev~  630 (664)
                      ....++.+++.+||+.||++||++. ++.
T Consensus       240 ~~s~~~~~li~~lL~~dp~~R~~~~~~i~  268 (345)
T 1xjd_A          240 WLEKEAKDLLVKLFVREPEKRLGVRGDIR  268 (345)
T ss_dssp             TSCHHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred             ccCHHHHHHHHHHhcCCHhHcCCChHHHH
Confidence            2335688999999999999999997 554

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=6.5e-37  Score=334.96  Aligned_cols=237  Identities=18%  Similarity=0.221  Sum_probs=184.8

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. +|..||||++.......  ......+.+|++++++++||||+++++++...+  ..++||
T Consensus       152 ~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~--~~~lv~  227 (446)
T 4ejn_A          152 YLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVA--KDEVAHTLTENRVLQNSRHPFLTALKYSFQTHD--RLCFVM  227 (446)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC---------------CCCCCSCTTSCCEEEEEEETT--EEEEEE
T ss_pred             EeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhh--hHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCC--EEEEEE
Confidence            3488999999999999964 68999999997543221  223456889999999999999999999999877  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM--  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~-~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~--  529 (664)
                      ||+++|+|.+++..  ...+++..+..++.+++.||+|||+ .+  |+||||||+|||++.++.+||+|||+++....  
T Consensus       228 e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~~g--iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~  303 (446)
T 4ejn_A          228 EYANGGELFFHLSR--ERVFSEDRARFYGAEIVSALDYLHSEKN--VVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDG  303 (446)
T ss_dssp             CCCSSCBHHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHHHHTC--CCCCCCCGGGEEECSSSCEEECCCCCCCTTCC--
T ss_pred             eeCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHhhcCC--EEECCCCHHHEEECCCCCEEEccCCCceeccCCC
Confidence            99999999999863  3468999999999999999999997 88  99999999999999999999999999876421  


Q ss_pred             -------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          530 -------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       530 -------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                             ....+.+||......++.++|||||||++|||+||+.||..  ....+...........           ++.
T Consensus       304 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~--~~~~~~~~~i~~~~~~-----------~p~  370 (446)
T 4ejn_A          304 ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYN--QDHEKLFELILMEEIR-----------FPR  370 (446)
T ss_dssp             ---CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCC-----------CCT
T ss_pred             cccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCC--CCHHHHHHHHHhCCCC-----------CCc
Confidence                   23456678887778899999999999999999999999943  3334444443332211           122


Q ss_pred             HHHHHHHHHHHHhccCCCCCCC-----CHHHHHH
Q 006019          603 EQLETLGELIKSCVRADPEKRP-----TMRDIAA  631 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RP-----s~~ev~~  631 (664)
                      ....++.+++.+||+.||++||     +++|+++
T Consensus       371 ~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~  404 (446)
T 4ejn_A          371 TLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ  404 (446)
T ss_dssp             TSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             cCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence            2335688999999999999999     9999875

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=4.4e-36  Score=316.74  Aligned_cols=234  Identities=20%  Similarity=0.242  Sum_probs=187.6

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.+.||+|+||.||+|+.. +++.+|+|++.......  ....+.+.+|+.++.++ +|||||++++++...+  ..++|
T Consensus        13 ~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~--~~~lv   88 (345)
T 3a8x_A           13 LLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVND--DEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTES--RLFFV   88 (345)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCS--HHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS--EEEEE
T ss_pred             EEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcc--hHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCC--EEEEE
Confidence            3488999999999999975 58899999997654332  34456788999999988 8999999999998876  77999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh---
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA---  528 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~---  528 (664)
                      |||+++|+|.+++..  ...+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...   
T Consensus        89 ~e~~~gg~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~LH~~~--ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~~  164 (345)
T 3a8x_A           89 IEYVNGGDLMFHMQR--QRKLPEEHARFYSAEISLALNYLHERG--IIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPG  164 (345)
T ss_dssp             ECCCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCCGGGEEECTTSCEEECCGGGCBCSCCTT
T ss_pred             EeCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--ceecCCCHHHEEECCCCCEEEEeccccccccCCC
Confidence            999999999999863  346899999999999999999999998  9999999999999999999999999987532   


Q ss_pred             ------hhhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCC------ChHHHH-HHHhcCCCCCccccCC
Q 006019          529 ------MAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG------SLEDWA-ADYLSGVQPLQQFVDP  595 (664)
Q Consensus       529 ------~~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~------~~~~~~-~~~~~~~~~~~~~~d~  595 (664)
                            .....+.+||......++.++|||||||++|||+||+.||.....      ...+.. ........        
T Consensus       165 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~~--------  236 (345)
T 3a8x_A          165 DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQI--------  236 (345)
T ss_dssp             CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCCC--------
T ss_pred             CcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCCC--------
Confidence                  123456678888777889999999999999999999999953211      111222 22221111        


Q ss_pred             CCCCCCHHHHHHHHHHHHHhccCCCCCCCCH
Q 006019          596 TLSSFDEEQLETLGELIKSCVRADPEKRPTM  626 (664)
Q Consensus       596 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~  626 (664)
                         .++.....++.+++.+||+.||++||++
T Consensus       237 ---~~p~~~s~~~~~li~~lL~~dP~~R~~~  264 (345)
T 3a8x_A          237 ---RIPRSLSVKAASVLKSFLNKDPKERLGC  264 (345)
T ss_dssp             ---CCCTTSCHHHHHHHHHHTCSSTTTSTTC
T ss_pred             ---CCCCCCCHHHHHHHHHHhcCCHhHCCCC
Confidence               1222334568899999999999999995

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=5.8e-36  Score=315.41  Aligned_cols=252  Identities=20%  Similarity=0.313  Sum_probs=195.8

Q ss_pred             HHHHhhhhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhc--cCCCcccceEEEEecCCC
Q 006019          368 EAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSK--VNHKNFVNLIGFCEEEEP  445 (664)
Q Consensus       368 ~~~~~~~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~--l~H~niv~l~g~~~~~~~  445 (664)
                      ......+.+.||+|+||.||+|+. +++.||||++...        ..+.+.+|++++..  ++||||+++++++.....
T Consensus        40 ~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~--------~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~  110 (342)
T 1b6c_B           40 IARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR--------EERSWFREAEIYQTVMLRHENILGFIAADNKDNG  110 (342)
T ss_dssp             HHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG--------GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCS
T ss_pred             ccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch--------hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCC
Confidence            334445568999999999999998 5889999998532        24568889999887  789999999999987542


Q ss_pred             --ceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhh--------cCCCCeEEeCcCCCCeEecCCCc
Q 006019          446 --FTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMH--------QLNPPIAHNYLNSSAVHLTEDYA  515 (664)
Q Consensus       446 --~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH--------~~~~~ivHrDLk~~NILld~~~~  515 (664)
                        ...++||||+++|+|.+++..   ..+++..+..++.+++.||+|||        +.+  |+||||||+|||++.++.
T Consensus       111 ~~~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~--ivH~Dlkp~NIll~~~~~  185 (342)
T 1b6c_B          111 TWTQLWLVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPA--IAHRDLKSKNILVKKNGT  185 (342)
T ss_dssp             SCCCEEEEECCCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCE--EECSCCSGGGEEECTTSC
T ss_pred             ccceeEEEEeecCCCcHHHHHhc---cCccHHHHHHHHHHHHHHHHHHHHHHhhhcccCC--eeeCCCCHHHEEECCCCC
Confidence              146899999999999999963   35899999999999999999999        666  999999999999999999


Q ss_pred             eEecccCchhhhhhh-------------hhhcccccccCCC------CCCcCCcchhhHHHHHHHHhC----------CC
Q 006019          516 AKLSDLSFWNEIAMA-------------EMAATSKKLSSAP------SASLESNVYNFGVLLFEMVTG----------RL  566 (664)
Q Consensus       516 ~kl~DfGla~~~~~~-------------~~~~~~pe~~~~~------~~s~ksDVySfGvvl~El~tG----------~~  566 (664)
                      +||+|||+++.....             ...+.+||.....      .++.++|||||||++|||+||          +.
T Consensus       186 ~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~  265 (342)
T 1b6c_B          186 CCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQL  265 (342)
T ss_dssp             EEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCC
T ss_pred             EEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCccccccc
Confidence            999999998755322             2345567765543      233689999999999999999          77


Q ss_pred             CccCCC---CChHHHHHHHhcCCCCCccccCCCCCC--CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          567 PYLVDN---GSLEDWAADYLSGVQPLQQFVDPTLSS--FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       567 P~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                      ||....   .....+.......      ...+.+..  ...++...+.+++.+||+.||++||++.+|++.|+++.+.
T Consensus       266 p~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~  337 (342)
T 1b6c_B          266 PYYDLVPSDPSVEEMRKVVCEQ------KLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  337 (342)
T ss_dssp             TTTTTSCSSCCHHHHHHHHTTS------CCCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             CccccCcCcccHHHHHHHHHHH------HhCCCCcccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHH
Confidence            874321   2233333332221      11122211  1346677899999999999999999999999999998754

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=2.5e-36  Score=313.95  Aligned_cols=247  Identities=19%  Similarity=0.209  Sum_probs=188.5

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. +|..||+|++.....   .....+.+.+|++++++++||||+++++++...+  ..++||
T Consensus         7 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   81 (311)
T 4agu_A            7 KIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESED---DPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKR--RLHLVF   81 (311)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC----HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             EeeEEeecCCeEEEEEEeCCCCcEEEEEEeecccc---chHHHHHHHHHHHHHHhCCCCCccchhheeecCC--eEEEEE
Confidence            3478999999999999975 589999998864332   2344677899999999999999999999998877  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++++|.++++  ....+++..+..++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||+++....   
T Consensus        82 e~~~~~~l~~~~~--~~~~~~~~~~~~i~~~l~~~l~~lH~~~--ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  157 (311)
T 4agu_A           82 EYCDHTVLHELDR--YQRGVPEHLVKSITWQTLQAVNFCHKHN--CIHRDVKPENILITKHSVIKLCDFGFARLLTGPSD  157 (311)
T ss_dssp             ECCSEEHHHHHHH--TSSCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTSCEEECCCTTCEECC----
T ss_pred             EeCCCchHHHHHh--hhcCCCHHHHHHHHHHHHHHHHHHHHCC--CcCCCCChhhEEEcCCCCEEEeeCCCchhccCccc
Confidence            9999999998875  3456899999999999999999999998  99999999999999999999999999875431   


Q ss_pred             ------hhhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHH---hcC-----------CCC
Q 006019          530 ------AEMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY---LSG-----------VQP  588 (664)
Q Consensus       530 ------~~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~---~~~-----------~~~  588 (664)
                            ....+.+||.... ..++.++||||||+++|||+||+.||....  ..+.....   ...           ...
T Consensus       158 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (311)
T 4agu_A          158 YYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKS--DVDQLYLIRKTLGDLIPRHQQVFSTNQY  235 (311)
T ss_dssp             --------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHCSCCHHHHHHHHTCGG
T ss_pred             ccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHhcccccccccccccccc
Confidence                  2234567776644 567899999999999999999999995322  11111111   100           000


Q ss_pred             Cc--cccCCCCC-C---CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          589 LQ--QFVDPTLS-S---FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       589 ~~--~~~d~~~~-~---~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ..  .+.++... .   ..+.....+.+++.+||+.||++|||++|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  284 (311)
T 4agu_A          236 FSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLH  284 (311)
T ss_dssp             GTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred             cccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhc
Confidence            00  00111000 0   00123456889999999999999999999986

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=6.8e-36  Score=309.77  Aligned_cols=240  Identities=17%  Similarity=0.253  Sum_probs=191.2

Q ss_pred             hhhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEE
Q 006019          372 EDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  450 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~l  450 (664)
                      ..+.+.||+|+||.||+++.. +|+.||+|.+.....     ...+.+.+|++++++++||||+++++++.+.+  ..++
T Consensus        11 y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~l   83 (304)
T 2jam_A           11 FIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPA-----FRDSSLENEIAVLKKIKHENIVTLEDIYESTT--HYYL   83 (304)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC-----------HHHHHHHHHHHCCCTTBCCEEEEEECSS--EEEE
T ss_pred             ceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccc-----cchHHHHHHHHHHHhCCCCCeeehhhhcccCC--EEEE
Confidence            345589999999999999975 689999999874332     12356889999999999999999999998876  6799


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEe---cCCCceEecccCchhhh
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL---TEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILl---d~~~~~kl~DfGla~~~  527 (664)
                      ||||+++|+|.+++...  ..+++.....++.+++.||+|||+.+  ++||||||+||++   ++++.+||+|||+++..
T Consensus        84 v~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~  159 (304)
T 2jam_A           84 VMQLVSGGELFDRILER--GVYTEKDASLVIQQVLSAVKYLHENG--IVHRDLKPENLLYLTPEENSKIMITDFGLSKME  159 (304)
T ss_dssp             EECCCCSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCC
T ss_pred             EEEcCCCccHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCCHHHEEEecCCCCCCEEEccCCcceec
Confidence            99999999999988643  46899999999999999999999998  9999999999999   78899999999998754


Q ss_pred             hh-------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 006019          528 AM-------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  600 (664)
Q Consensus       528 ~~-------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  600 (664)
                      ..       ....+.+||......++.++||||||+++|||+||+.||..  ....+.......+.....   .+    .
T Consensus       160 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~--~~~~~~~~~i~~~~~~~~---~~----~  230 (304)
T 2jam_A          160 QNGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYE--ETESKLFEKIKEGYYEFE---SP----F  230 (304)
T ss_dssp             CCBTTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTT--SCHHHHHHHHHHCCCCCC---TT----T
T ss_pred             CCCccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHcCCCCCC---cc----c
Confidence            32       23346678888888889999999999999999999999943  223333333333211111   11    1


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          601 DEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       601 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ....+..+.+++.+||+.||++||++.++++
T Consensus       231 ~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~  261 (304)
T 2jam_A          231 WDDISESAKDFICHLLEKDPNERYTCEKALS  261 (304)
T ss_dssp             TTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             cccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            1223356889999999999999999999986

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=2.9e-36  Score=310.83  Aligned_cols=248  Identities=15%  Similarity=0.185  Sum_probs=190.6

Q ss_pred             hhhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          373 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      .+.+.||+|+||.||+|+. .+++.||||++......       .++.+|++++++++|++++..++++...+. ..++|
T Consensus        12 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-------~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~-~~~lv   83 (296)
T 4hgt_A           12 RLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH-------PQLHIESKIYKMMQGGVGIPTIRWCGAEGD-YNVMV   83 (296)
T ss_dssp             EEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---C-------CCHHHHHHHHHHHTTSTTCCCEEEEEEETT-EEEEE
T ss_pred             EEeeeecCCCCeEEEEEEEcCCCceEEEEeecccccc-------hHHHHHHHHHHHhcCCCCCCeeeeecCCCC-ceEEE
Confidence            3458899999999999996 57889999987544322       358889999999999998888877754432 67999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEe---cCCCceEecccCchhhhh
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL---TEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILl---d~~~~~kl~DfGla~~~~  528 (664)
                      |||+ +|+|.+++.. ....+++..+..++.+++.||+|||+.+  |+||||||+|||+   ++++.+||+|||+++...
T Consensus        84 ~e~~-~~~L~~~~~~-~~~~~~~~~~~~i~~qi~~~l~~LH~~~--ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~  159 (296)
T 4hgt_A           84 MELL-GPSLEDLFNF-CSRKFSLKTVLLLADQMISRIEYIHSKN--FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYR  159 (296)
T ss_dssp             EECC-CCBHHHHHHH-TTSCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECCGGGTTCEEECCCTTCEECB
T ss_pred             EEcc-CCCHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHeeeeccCCCCeEEEecCccceecc
Confidence            9999 9999999863 3456999999999999999999999999  9999999999999   789999999999987653


Q ss_pred             h----------------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCC-ChHHHHHHHhcCC-CCCc
Q 006019          529 M----------------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG-SLEDWAADYLSGV-QPLQ  590 (664)
Q Consensus       529 ~----------------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~-~~~~~~~~~~~~~-~~~~  590 (664)
                      .                ....+.+||......++.++|||||||++|||+||+.||..... ...+......... ....
T Consensus       160 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~  239 (296)
T 4hgt_A          160 DARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPI  239 (296)
T ss_dssp             CTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCH
T ss_pred             CcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccchh
Confidence            2                12345577877777889999999999999999999999953221 1111111111000 0000


Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          591 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       591 ~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                      ...       ....+..+.+++.+||+.||++||++.++++.|+++...
T Consensus       240 ~~~-------~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~  281 (296)
T 4hgt_A          240 EVL-------CKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHR  281 (296)
T ss_dssp             HHH-------TTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHH
T ss_pred             hhh-------hccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence            000       011235689999999999999999999999999999764

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=3.9e-36  Score=309.98  Aligned_cols=245  Identities=16%  Similarity=0.205  Sum_probs=191.4

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+. .+++.||||++......       +++.+|++++++++|++++..++++...+. ..++||
T Consensus        13 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-------~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~-~~~lv~   84 (296)
T 3uzp_A           13 LGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH-------PQLHIESKIYKMMQGGVGIPTIRWCGAEGD-YNVMVM   84 (296)
T ss_dssp             EEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSSC-------CHHHHHHHHHHHHTTSTTCCCEEEEEEETT-EEEEEE
T ss_pred             EEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcch-------hHHHHHHHHHHHhhcCCCCCccccccCCCC-ceEEEE
Confidence            347899999999999996 57899999988654322       358899999999999998887777754432 579999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEe---cCCCceEecccCchhhhhh
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL---TEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILl---d~~~~~kl~DfGla~~~~~  529 (664)
                      ||+ +|+|.+++.. ....+++..+..++.+++.||+|||+.+  |+||||||+|||+   +.++.+||+|||+++....
T Consensus        85 e~~-~~~L~~~~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~~--ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~  160 (296)
T 3uzp_A           85 ELL-GPSLEDLFNF-CSRKFSLKTVLLLADQMISRIEYIHSKN--FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRD  160 (296)
T ss_dssp             ECC-CCBHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEECCGGGTTCEEECCCTTCEECBC
T ss_pred             Eec-CCCHHHHHHh-hccCCCHHHHHHHHHHHHHHHHHHHhCC--eeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccc
Confidence            999 9999999863 3456999999999999999999999998  9999999999999   5889999999999876532


Q ss_pred             h----------------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCC-C---hHH-HHHHHhcCCCC
Q 006019          530 A----------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG-S---LED-WAADYLSGVQP  588 (664)
Q Consensus       530 ~----------------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~-~---~~~-~~~~~~~~~~~  588 (664)
                      .                ...+.+||......++.++|||||||++|||+||+.||..... .   ... ........   
T Consensus       161 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~---  237 (296)
T 3uzp_A          161 ARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMST---  237 (296)
T ss_dssp             TTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHS---
T ss_pred             cccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCC---
Confidence            2                2234567777777889999999999999999999999953221 1   111 11111110   


Q ss_pred             CccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCC
Q 006019          589 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  640 (664)
Q Consensus       589 ~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~  640 (664)
                      .....       ....+.++.+++.+||+.||++||++.+|++.|+++....
T Consensus       238 ~~~~~-------~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~  282 (296)
T 3uzp_A          238 PIEVL-------CKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQ  282 (296)
T ss_dssp             CHHHH-------TTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             chHHH-------HhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhc
Confidence            00000       1112356899999999999999999999999999987643

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=7.7e-37  Score=314.42  Aligned_cols=247  Identities=21%  Similarity=0.313  Sum_probs=187.4

Q ss_pred             hhcccccCCCeEEEEEEEC--CCc--EEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeE
Q 006019          374 FSNVIGSSPIGTVYKGTLS--NGV--EIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  449 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~--~~~--~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~  449 (664)
                      +.+.||+|+||.||+|++.  ++.  .||||++.......  ....+.|.+|++++++++||||+++++++....   .+
T Consensus        22 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~---~~   96 (291)
T 1u46_A           22 LLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQ--PEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP---MK   96 (291)
T ss_dssp             EEEECC----CCCEEEEEECTTSCEEEEEEEC----------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS---CE
T ss_pred             eeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCC--HHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC---ce
Confidence            4578999999999999863  233  68898886543222  245678999999999999999999999997654   58


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                      +|+||+++|+|.+++... ...+++..+.+++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++....
T Consensus        97 ~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~  173 (291)
T 1u46_A           97 MVTELAPLGSLLDRLRKH-QGHFLLGTLSRYAVQVAEGMGYLESKR--FIHRDLAARNLLLATRDLVKIGDFGLMRALPQ  173 (291)
T ss_dssp             EEEECCTTCBHHHHHHHH-GGGSCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEEEETTEEEECCCTTCEECCC
T ss_pred             eeEecccCCCHHHHHHhc-cCCcCHHHHHHHHHHHHHHHHHHHhCC--cccCCCchheEEEcCCCCEEEccccccccccc
Confidence            999999999999998643 356899999999999999999999998  99999999999999999999999999876532


Q ss_pred             h------------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCC
Q 006019          530 A------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  596 (664)
Q Consensus       530 ~------------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  596 (664)
                      .            ...+.+||......++.++||||||+++|||+| |+.||..  ....+............       
T Consensus       174 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~--~~~~~~~~~~~~~~~~~-------  244 (291)
T 1u46_A          174 NDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIG--LNGSQILHKIDKEGERL-------  244 (291)
T ss_dssp             -CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTT--CCHHHHHHHHHTSCCCC-------
T ss_pred             cccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCccc--CCHHHHHHHHHccCCCC-------
Confidence            1            123567777666667889999999999999999 9999943  33344443333221111       


Q ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          597 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       597 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                        ..+...+..+.+++.+||+.||++||++.++++.|+++...
T Consensus       245 --~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~  285 (291)
T 1u46_A          245 --PRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPT  285 (291)
T ss_dssp             --CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred             --CCCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCcc
Confidence              11223345789999999999999999999999999988653

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-36  Score=320.32  Aligned_cols=238  Identities=19%  Similarity=0.260  Sum_probs=185.3

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCC--CcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH--KNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H--~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.+.||+|+||.||++...++..||||++.....   .....+.|.+|++++++++|  +||+++++++...+  ..++|
T Consensus        13 i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~---~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~--~~~lv   87 (343)
T 3dbq_A           13 ILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA---DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQ--YIYMV   87 (343)
T ss_dssp             EEEEESCCSSEEEEEEECTTSCEEEEEEEECTTC---CHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS--EEEEE
T ss_pred             EEEEEecCCCeEEEEEEeCCCCEEEEEEeecccc---chHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCC--EEEEE
Confidence            4578999999999999988899999999875432   23445789999999999987  99999999998877  77999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh-
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  530 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~-  530 (664)
                      || +.+|+|.+++..  ...+++..+..|+.+++.||+|||+.+  |+||||||+|||++ ++.+||+|||+++..... 
T Consensus        88 ~e-~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~al~~lH~~~--iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~  161 (343)
T 3dbq_A           88 ME-CGNIDLNSWLKK--KKSIDPWERKSYWKNMLEAVHTIHQHG--IVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDT  161 (343)
T ss_dssp             EC-CCSEEHHHHHHH--SCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEEE-TTEEEECCCSSSCCC----
T ss_pred             Ee-CCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCcceEEEE-CCcEEEeecccccccCccc
Confidence            99 468899999974  356899999999999999999999998  99999999999997 678999999999765321 


Q ss_pred             ----------hhhcccccccCC-----------CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCC
Q 006019          531 ----------EMAATSKKLSSA-----------PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL  589 (664)
Q Consensus       531 ----------~~~~~~pe~~~~-----------~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~  589 (664)
                                ...+.+||....           ..++.++|||||||++|||+||+.||...... ............. 
T Consensus       162 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~-~~~~~~~~~~~~~-  239 (343)
T 3dbq_A          162 TSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQ-ISKLHAIIDPNHE-  239 (343)
T ss_dssp             --------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSH-HHHHHHHHCTTSC-
T ss_pred             ccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhH-HHHHHHHhcCCcc-
Confidence                      223456775432           56788999999999999999999999532222 2222222211110 


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          590 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       590 ~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                              ..++......+.+++.+||+.||++|||+.|+++.
T Consensus       240 --------~~~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~h  274 (343)
T 3dbq_A          240 --------IEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAH  274 (343)
T ss_dssp             --------CCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             --------cCCcccCCHHHHHHHHHHcCCChhHCCCHHHHHhC
Confidence                    01122223568899999999999999999999864

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=2.7e-36  Score=317.41  Aligned_cols=238  Identities=16%  Similarity=0.241  Sum_probs=192.1

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+++.. ++..+|+|.+.......  ....+.+.+|++++++++||||+++++++.+.+  ..++||
T Consensus        45 ~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~  120 (335)
T 2owb_A           45 RGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLK--PHQREKMSMEISIHRSLAHQHVVGFHGFFEDND--FVFVVL  120 (335)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCS--HHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             EEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcC--HHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCC--eEEEEE
Confidence            3478999999999999975 47889999987544322  345677999999999999999999999998876  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++++|.+++..  ...+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....  
T Consensus       121 e~~~~~~L~~~~~~--~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~  196 (335)
T 2owb_A          121 ELCRRRSLLELHKR--RKALTEPEARYYLRQIVLGCQYLHRNR--VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE  196 (335)
T ss_dssp             CCCTTCBHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEECTTCCEEECCCTTCEECCSTTC
T ss_pred             ecCCCCCHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHCC--CEecCCCchhEEEcCCCCEEEeeccCceecccCcc
Confidence            99999999998863  346899999999999999999999998  999999999999999999999999998765321  


Q ss_pred             -------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          531 -------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       531 -------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                             ...+.+||......++.++||||||+++|||+||+.||..  ....+...........           .+..
T Consensus       197 ~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~--~~~~~~~~~~~~~~~~-----------~~~~  263 (335)
T 2owb_A          197 RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFET--SCLKETYLRIKKNEYS-----------IPKH  263 (335)
T ss_dssp             CBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHHTCCC-----------CCTT
T ss_pred             cccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCC--CCHHHHHHHHhcCCCC-----------CCcc
Confidence                   2235567776667788999999999999999999999943  3333333332222111           1122


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      ....+.+++.+||+.||++||++.|+++.
T Consensus       264 ~~~~~~~li~~~l~~dp~~Rps~~ell~~  292 (335)
T 2owb_A          264 INPVAASLIQKMLQTDPTARPTINELLND  292 (335)
T ss_dssp             SCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred             CCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            23568899999999999999999999873

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-36  Score=320.24  Aligned_cols=234  Identities=18%  Similarity=0.247  Sum_probs=186.7

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCC---chhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDW---PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  449 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~  449 (664)
                      +.+.||+|+||.||+|+. .++..||||++........   .....+.+.+|++++++++||||+++++++.+.+  ..+
T Consensus        28 ~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~--~~~  105 (335)
T 3dls_A           28 TMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQG--FFQ  105 (335)
T ss_dssp             EEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSS--EEE
T ss_pred             EEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCC--EEE
Confidence            347899999999999995 4688999999976542211   0112345788999999999999999999998877  679


Q ss_pred             EEEEecCCC-ChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          450 MVFEYAPNG-TLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       450 lV~Ey~~~G-sL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      +||||+..| +|.+++.  ....+++..+..|+.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...
T Consensus       106 lv~e~~~~g~~l~~~~~--~~~~l~~~~~~~i~~qi~~~L~~LH~~~--ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~~~  181 (335)
T 3dls_A          106 LVMEKHGSGLDLFAFID--RHPRLDEPLASYIFRQLVSAVGYLRLKD--IIHRDIKDENIVIAEDFTIKLIDFGSAAYLE  181 (335)
T ss_dssp             EEEECCTTSCBHHHHHH--TCCCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred             EEEEeCCCCccHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHhCC--eEEeccCHHHEEEcCCCcEEEeecccceECC
Confidence            999999877 9999886  3456999999999999999999999998  9999999999999999999999999987653


Q ss_pred             hh--------hhhcccccccCCCCC-CcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 006019          529 MA--------EMAATSKKLSSAPSA-SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  599 (664)
Q Consensus       529 ~~--------~~~~~~pe~~~~~~~-s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  599 (664)
                      ..        ...+.+||......+ +.++|||||||++|||+||+.||....        ...          .... .
T Consensus       182 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~--------~~~----------~~~~-~  242 (335)
T 3dls_A          182 RGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELE--------ETV----------EAAI-H  242 (335)
T ss_dssp             TTCCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGG--------GGT----------TTCC-C
T ss_pred             CCCceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHH--------HHH----------hhcc-C
Confidence            22        345667887666555 789999999999999999999993210        000          0000 0


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          600 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       600 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      .+.....++.+++.+||+.||++||++.++++.
T Consensus       243 ~~~~~~~~l~~li~~~L~~dP~~Rps~~ell~h  275 (335)
T 3dls_A          243 PPYLVSKELMSLVSGLLQPVPERRTTLEKLVTD  275 (335)
T ss_dssp             CSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred             CCcccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            111123568899999999999999999999874

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=4e-36  Score=319.91  Aligned_cols=240  Identities=15%  Similarity=0.227  Sum_probs=192.3

Q ss_pred             hhcccccCCCeEEEEEE------ECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC---CCcccceEEEEecCC
Q 006019          374 FSNVIGSSPIGTVYKGT------LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN---HKNFVNLIGFCEEEE  444 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~------~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~---H~niv~l~g~~~~~~  444 (664)
                      +.+.||+|+||.||+|+      ..+++.||||++...        ...++..|++++.+++   |+||+++++++...+
T Consensus        69 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~--------~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~  140 (365)
T 3e7e_A           69 VHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA--------NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQN  140 (365)
T ss_dssp             EEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC--------CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECSS
T ss_pred             EEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC--------ChhHHHHHHHHHHHhhhhhhhhhhhhheeeecCC
Confidence            34789999999999994      456889999998532        2356888888888887   999999999998877


Q ss_pred             CceeEEEEEecCCCChhhhhccc---CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecC---------
Q 006019          445 PFTRMMVFEYAPNGTLFEHIHIK---ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE---------  512 (664)
Q Consensus       445 ~~~~~lV~Ey~~~GsL~~~l~~~---~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~---------  512 (664)
                        ..++||||+++|+|.++++..   ....++|..+..|+.+++.||+|||+++  |+||||||+|||++.         
T Consensus       141 --~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~--ivHrDiKp~NIll~~~~~~~~~~~  216 (365)
T 3e7e_A          141 --GSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCE--IIHGDIKPDNFILGNGFLEQDDED  216 (365)
T ss_dssp             --CEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTTT--EECCCCSGGGEEECGGGTCC----
T ss_pred             --CcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhCC--eecCCCCHHHEEecccccCccccc
Confidence              679999999999999998632   3467999999999999999999999998  999999999999998         


Q ss_pred             --CCceEecccCchhhhhh-----------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHH
Q 006019          513 --DYAAKLSDLSFWNEIAM-----------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWA  579 (664)
Q Consensus       513 --~~~~kl~DfGla~~~~~-----------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~  579 (664)
                        ++.+||+|||+++....           .+..+.+||......++.++|||||||++|||+||+.||......     
T Consensus       217 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~-----  291 (365)
T 3e7e_A          217 DLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGG-----  291 (365)
T ss_dssp             --CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETT-----
T ss_pred             cccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCC-----
Confidence              89999999999965421           234556788888888999999999999999999999998422110     


Q ss_pred             HHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCC-CCHHHHHHHHHhhhCCCCC
Q 006019          580 ADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKR-PTMRDIAAILREITGITPD  642 (664)
Q Consensus       580 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~R-Ps~~ev~~~L~~i~~~~~~  642 (664)
                                .......+...+  ..+.+.+++..|++.+|.+| |+++++.+.|+++.....+
T Consensus       292 ----------~~~~~~~~~~~~--~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~~~~~  343 (365)
T 3e7e_A          292 ----------ECKPEGLFRRLP--HLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQQHYT  343 (365)
T ss_dssp             ----------EEEECSCCTTCS--SHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHHHHHHHTT
T ss_pred             ----------ceeechhccccC--cHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHhhh
Confidence                      000111111111  13467789999999999998 7899999999998876443

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=3e-36  Score=320.14  Aligned_cols=245  Identities=19%  Similarity=0.250  Sum_probs=189.2

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-----CCcccceEEEEecCCCce
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-----HKNFVNLIGFCEEEEPFT  447 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-----H~niv~l~g~~~~~~~~~  447 (664)
                      +.+.||+|+||.||+|+. .++..||||++...      ....+.+..|++++++++     |||||++++++...+  .
T Consensus        39 ~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~------~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~~--~  110 (360)
T 3llt_A           39 VIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI------KKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYYD--H  110 (360)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEECSC------HHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEETT--E
T ss_pred             EEEEEcccCCeEEEEEEECCCCeEEEEEEeccc------hhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeECC--e
Confidence            448899999999999997 46889999998521      234567888999999997     999999999998877  7


Q ss_pred             eEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecC---------------
Q 006019          448 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE---------------  512 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~---------------  512 (664)
                      .++||||+ +|+|.+++.......+++..+..++.+++.||+|||+.+  |+||||||+|||++.               
T Consensus       111 ~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivHrDlkp~NIll~~~~~~~~~~~~~~~~~  187 (360)
T 3llt_A          111 MCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKMS--LTHTDLKPENILLDDPYFEKSLITVRRVTD  187 (360)
T ss_dssp             EEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEESCTTCCEEEEEEECTTT
T ss_pred             eEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeeCCCCcccEEEccccccccccchhcccc
Confidence            79999999 999999997666567999999999999999999999998  999999999999986               


Q ss_pred             ----------CCceEecccCchhhhhh------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChH
Q 006019          513 ----------DYAAKLSDLSFWNEIAM------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLE  576 (664)
Q Consensus       513 ----------~~~~kl~DfGla~~~~~------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~  576 (664)
                                ++.+||+|||+++....      ....+.+||......++.++|||||||++|||+||+.||....  ..
T Consensus       188 ~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~--~~  265 (360)
T 3llt_A          188 GKKIQIYRTKSTGIKLIDFGCATFKSDYHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTHE--HM  265 (360)
T ss_dssp             CCEEEEEEESCCCEEECCCTTCEETTSCCCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCCSS--HH
T ss_pred             cccccccccCCCCEEEEeccCceecCCCCcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCCCc--HH
Confidence                      78999999999875532      2345678888888889999999999999999999999995322  11


Q ss_pred             HHHHHHhcCCCCC-------------ccccC--------CCCCC--------------CCHHHHHHHHHHHHHhccCCCC
Q 006019          577 DWAADYLSGVQPL-------------QQFVD--------PTLSS--------------FDEEQLETLGELIKSCVRADPE  621 (664)
Q Consensus       577 ~~~~~~~~~~~~~-------------~~~~d--------~~~~~--------------~~~~~~~~l~~l~~~Cl~~~P~  621 (664)
                      +............             ....+        +....              ........+.+++.+||+.||+
T Consensus       266 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~  345 (360)
T 3llt_A          266 EHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHELFCDFLYSILQIDPT  345 (360)
T ss_dssp             HHHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCCHHHHHHHHHHCCSSGG
T ss_pred             HHHHHHHHhcCCCCHHHHhhhhhccCccccCcccceecCcccccchhhhhhhhhcccccccchHHHHHHHHHHHhcCChh
Confidence            2111111100000             00000        00000              0000115678999999999999


Q ss_pred             CCCCHHHHHH
Q 006019          622 KRPTMRDIAA  631 (664)
Q Consensus       622 ~RPs~~ev~~  631 (664)
                      +|||+.|+++
T Consensus       346 ~Rpta~elL~  355 (360)
T 3llt_A          346 LRPSPAELLK  355 (360)
T ss_dssp             GSCCHHHHTT
T ss_pred             hCCCHHHHhc
Confidence            9999999874

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=2.6e-36  Score=321.50  Aligned_cols=239  Identities=19%  Similarity=0.225  Sum_probs=183.1

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHH-HhccCCCcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDT-LSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~-l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.+.||+|+||.||+|+.. ++..+|+|++.......  ....+.+.+|..+ ++.++|||||++++++...+  ..++|
T Consensus        42 ~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~--~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~--~~~lv  117 (373)
T 2r5t_A           42 FLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILK--KKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTAD--KLYFV  117 (373)
T ss_dssp             EEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC---------------CCBCCCCCTTBCCEEEEEECSS--EEEEE
T ss_pred             EEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhh--hHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCC--EEEEE
Confidence            4588999999999999975 57889999997654322  2234567777776 57789999999999998877  78999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh--
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM--  529 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~--  529 (664)
                      |||+++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....  
T Consensus       118 ~E~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~g--ivHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~~  193 (373)
T 2r5t_A          118 LDYINGGELFYHLQR--ERCFLEPRARFYAAEIASALGYLHSLN--IVYRDLKPENILLDSQGHIVLTDFGLCKENIEHN  193 (373)
T ss_dssp             EECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECTTSCEEECCCCBCGGGBCCC
T ss_pred             EeCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--ceecCCCHHHEEECCCCCEEEeeCccccccccCC
Confidence            999999999999863  346889999999999999999999999  99999999999999999999999999986421  


Q ss_pred             -------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          530 -------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       530 -------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                             ....+.+||......++.++|||||||++|||+||+.||.  ..+..+....++.....           ++.
T Consensus       194 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~--~~~~~~~~~~i~~~~~~-----------~~~  260 (373)
T 2r5t_A          194 STTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFY--SRNTAEMYDNILNKPLQ-----------LKP  260 (373)
T ss_dssp             CCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTC--CSBHHHHHHHHHHSCCC-----------CCS
T ss_pred             CccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCC--CCCHHHHHHHHHhcccC-----------CCC
Confidence                   1234567887777788999999999999999999999994  33344444444433111           112


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 006019          603 EQLETLGELIKSCVRADPEKRPTMRDIAAIL  633 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L  633 (664)
                      .....+.+++.+||+.||++||++.+.++.+
T Consensus       261 ~~~~~~~~li~~lL~~dp~~R~~~~~~~~~i  291 (373)
T 2r5t_A          261 NITNSARHLLEGLLQKDRTKRLGAKDDFMEI  291 (373)
T ss_dssp             SSCHHHHHHHHHHTCSSGGGSTTTTTTHHHH
T ss_pred             CCCHHHHHHHHHHcccCHHhCCCCCCCHHHH
Confidence            2235688999999999999999986544443

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=1.6e-37  Score=332.28  Aligned_cols=235  Identities=12%  Similarity=0.196  Sum_probs=179.4

Q ss_pred             hcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHH---HHHhccCCCcccceE-------EEEecC
Q 006019          375 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKI---DTLSKVNHKNFVNLI-------GFCEEE  443 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~---~~l~~l~H~niv~l~-------g~~~~~  443 (664)
                      .+.||+|+||.||+|+. .+|+.||||++.......  ....+.|.+|+   +.+++++|||||+++       +++...
T Consensus        78 ~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~--~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~~~~~  155 (377)
T 3byv_A           78 GTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPP--SNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDP  155 (377)
T ss_dssp             EEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CC--TTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEEEECT
T ss_pred             cceeecCCCEEEEEEEECCCCcEEEEEEEeeccccc--hHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhhhhcc
Confidence            47899999999999996 568999999997543322  23457899999   556666899999998       665544


Q ss_pred             CC---------------ceeEEEEEecCCCChhhhhcccC-----CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCc
Q 006019          444 EP---------------FTRMMVFEYAPNGTLFEHIHIKE-----SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYL  503 (664)
Q Consensus       444 ~~---------------~~~~lV~Ey~~~GsL~~~l~~~~-----~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDL  503 (664)
                      +.               ...++||||+ +|+|.+++....     ...++|..+..|+.+++.||+|||+.+  |+||||
T Consensus       156 ~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivHrDi  232 (377)
T 3byv_A          156 QKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYG--LVHTYL  232 (377)
T ss_dssp             TSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTT--EECSCC
T ss_pred             CCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhCC--eecCCC
Confidence            21               0268999999 689999986421     223557889999999999999999998  999999


Q ss_pred             CCCCeEecCCCceEecccCchhhhhhh-----hhhcccccccCCC-----------CCCcCCcchhhHHHHHHHHhCCCC
Q 006019          504 NSSAVHLTEDYAAKLSDLSFWNEIAMA-----EMAATSKKLSSAP-----------SASLESNVYNFGVLLFEMVTGRLP  567 (664)
Q Consensus       504 k~~NILld~~~~~kl~DfGla~~~~~~-----~~~~~~pe~~~~~-----------~~s~ksDVySfGvvl~El~tG~~P  567 (664)
                      ||+|||++.++.+||+|||+++.....     ...+.+||.....           .++.++|||||||++|||+||+.|
T Consensus       233 kp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~g~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~~P  312 (377)
T 3byv_A          233 RPVDIVLDQRGGVFLTGFEHLVRDGARVVSSVSRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLP  312 (377)
T ss_dssp             CGGGEEECTTCCEEECCGGGCEETTCEEECCCCTTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSSCC
T ss_pred             CHHHEEEcCCCCEEEEechhheecCCcccCCCCcCccChhhhcccccccccccccccCChhhhHHHHHHHHHHHHHCCCC
Confidence            999999999999999999998864321     1456678776655           689999999999999999999999


Q ss_pred             ccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          568 YLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       568 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      |.....            ......+.. .....    +..+.+++.+||+.||++||++.++++
T Consensus       313 f~~~~~------------~~~~~~~~~-~~~~~----~~~~~~li~~~L~~dp~~Rpt~~e~l~  359 (377)
T 3byv_A          313 ITKDAA------------LGGSEWIFR-SCKNI----PQPVRALLEGFLRYPKEDRLLPLQAME  359 (377)
T ss_dssp             C------------------CCSGGGGS-SCCCC----CHHHHHHHHHHTCSSGGGCCCHHHHHT
T ss_pred             Cccccc------------ccchhhhhh-hccCC----CHHHHHHHHHHcCCCchhCCCHHHHhh
Confidence            942210            011111111 11122    356889999999999999999999986

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=3.4e-36  Score=318.29  Aligned_cols=237  Identities=18%  Similarity=0.186  Sum_probs=190.9

Q ss_pred             hhcccccCCCeEEEEEEECC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.+.||+|+||.||+|+... ++.||+|++.......  ....+.+..|..++..+ +||||+++++++...+  ..++|
T Consensus        24 ~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~--~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~--~~~lv   99 (353)
T 2i0e_A           24 FLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQ--DDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMD--RLYFV   99 (353)
T ss_dssp             EEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHH--TTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSS--EEEEE
T ss_pred             EEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhc--chHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCC--EEEEE
Confidence            44889999999999999764 7899999987543211  12345688999999988 8999999999998876  78999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh--
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM--  529 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~--  529 (664)
                      |||+++|+|.+++...  ..+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....  
T Consensus       100 ~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~g--ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~  175 (353)
T 2i0e_A          100 MEYVNGGDLMYHIQQV--GRFKEPHAVFYAAEIAIGLFFLQSKG--IIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDG  175 (353)
T ss_dssp             EECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTT
T ss_pred             EeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCC--EEeccCCHHHEEEcCCCcEEEEeCCcccccccCC
Confidence            9999999999998643  46899999999999999999999998  99999999999999999999999999875321  


Q ss_pred             -------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          530 -------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       530 -------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                             ....+.+||......++.++|||||||++|||++|+.||..  .+..+....+......           ++.
T Consensus       176 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~--~~~~~~~~~i~~~~~~-----------~p~  242 (353)
T 2i0e_A          176 VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEG--EDEDELFQSIMEHNVA-----------YPK  242 (353)
T ss_dssp             CCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCC-----------CCT
T ss_pred             cccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCC--CCHHHHHHHHHhCCCC-----------CCC
Confidence                   23456678887777889999999999999999999999943  3444444444433111           122


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCC-----HHHHHH
Q 006019          603 EQLETLGELIKSCVRADPEKRPT-----MRDIAA  631 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs-----~~ev~~  631 (664)
                      ....++.+++.+||+.||++||+     ++++.+
T Consensus       243 ~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~  276 (353)
T 2i0e_A          243 SMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE  276 (353)
T ss_dssp             TSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHT
T ss_pred             CCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhc
Confidence            23456889999999999999996     455553

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=7.2e-36  Score=320.65  Aligned_cols=238  Identities=20%  Similarity=0.268  Sum_probs=186.0

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC--CCcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN--HKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~--H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.+.||+|+||.||+|...++..||||++.....   .....+.|.+|+++|++++  |||||++++++...+  ..++|
T Consensus        60 ~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~--~~~lv  134 (390)
T 2zmd_A           60 ILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA---DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQ--YIYMV  134 (390)
T ss_dssp             EEEEEECCSSEEEEEEECTTCCEEEEEEEECTTC---CHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS--EEEEE
T ss_pred             EEEEEccCCCeEEEEEEcCCCCEEEEEEEecccc---cHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCC--EEEEE
Confidence            4578999999999999988899999999875432   2345678999999999996  599999999998877  67999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh--
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM--  529 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~--  529 (664)
                      || +.+|+|.+++...  ..+++..+..|+.+|+.||+|||+.+  |+||||||+|||++ ++.+||+|||+++....  
T Consensus       135 ~E-~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~lH~~~--ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~  208 (390)
T 2zmd_A          135 ME-CGNIDLNSWLKKK--KSIDPWERKSYWKNMLEAVHTIHQHG--IVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDT  208 (390)
T ss_dssp             EE-CCSEEHHHHHHHC--SSCCHHHHHHHHHHHHHHHHHHHTTT--CCCCCCCGGGEEES-SSCEEECCCSSSCCC----
T ss_pred             Ee-cCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCC--eeecCCCHHHEEEE-CCeEEEEecCccccccCCC
Confidence            99 5688999998743  47899999999999999999999998  99999999999996 58999999999976532  


Q ss_pred             ---------hhhhcccccccCC-----------CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCC
Q 006019          530 ---------AEMAATSKKLSSA-----------PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL  589 (664)
Q Consensus       530 ---------~~~~~~~pe~~~~-----------~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~  589 (664)
                               ....+.+||....           ..++.++|||||||++|||+||+.||.... .........+......
T Consensus       209 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~-~~~~~~~~~~~~~~~~  287 (390)
T 2zmd_A          209 TSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQII-NQISKLHAIIDPNHEI  287 (390)
T ss_dssp             -----CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCC-CHHHHHHHHHCTTSCC
T ss_pred             ccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhh-HHHHHHHHHhCccccC
Confidence                     2234567776533           368889999999999999999999995322 2222222332221110


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          590 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       590 ~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                               .++......+.+++.+||+.||++||++.|+++.
T Consensus       288 ---------~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~h  321 (390)
T 2zmd_A          288 ---------EFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAH  321 (390)
T ss_dssp             ---------CCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             ---------CCCccchHHHHHHHHHHcccChhhCCCHHHHhhC
Confidence                     1111123568899999999999999999999864

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=5.3e-37  Score=330.65  Aligned_cols=240  Identities=19%  Similarity=0.226  Sum_probs=186.4

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      +.||+|+||.||+++.. +|+.||+|++.......  ....+.+.+|++++.+++||||+++++++.+.+  ..++||||
T Consensus        67 ~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~--~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~--~~~lVmE~  142 (412)
T 2vd5_A           67 KVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLK--RGEVSCFREERDVLVNGDRRWITQLHFAFQDEN--YLYLVMEY  142 (412)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHH--HGGGCCHHHHHHHHHHSCTTTBCCEEEEEECSS--EEEEEECC
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhh--HHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCC--EEEEEEcC
Confidence            78999999999999975 68999999986432111  112245889999999999999999999998877  78999999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh-----
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM-----  529 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~-----  529 (664)
                      +++|+|.+++... ...+++..+..++.+|+.||+|||+.+  |+||||||+|||+|.++.+||+|||+++....     
T Consensus       143 ~~gg~L~~~l~~~-~~~l~~~~~~~~~~qi~~aL~~LH~~g--iiHrDLKp~NILld~~g~vkL~DFGla~~~~~~~~~~  219 (412)
T 2vd5_A          143 YVGGDLLTLLSKF-GERIPAEMARFYLAEIVMAIDSVHRLG--YVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTVR  219 (412)
T ss_dssp             CCSCBHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCEE
T ss_pred             CCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCC--eeecccCHHHeeecCCCCEEEeechhheeccCCCccc
Confidence            9999999999632 346999999999999999999999998  99999999999999999999999999876532     


Q ss_pred             -----hhhhcccccccC-------CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 006019          530 -----AEMAATSKKLSS-------APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  597 (664)
Q Consensus       530 -----~~~~~~~pe~~~-------~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  597 (664)
                           ....+.+||...       ...++.++|||||||++|||+||+.||..  .+..+....+.......   ..+  
T Consensus       220 ~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~--~~~~~~~~~i~~~~~~~---~~p--  292 (412)
T 2vd5_A          220 SLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYA--DSTAETYGKIVHYKEHL---SLP--  292 (412)
T ss_dssp             CSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHTHHHHC---CCC--
T ss_pred             cceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCC--CCHHHHHHHHHhcccCc---CCC--
Confidence                 233456677654       35678999999999999999999999943  33333333333211000   001  


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCC---CCHHHHHH
Q 006019          598 SSFDEEQLETLGELIKSCVRADPEKR---PTMRDIAA  631 (664)
Q Consensus       598 ~~~~~~~~~~l~~l~~~Cl~~~P~~R---Ps~~ev~~  631 (664)
                       ..+...+.++.+++.+||. +|++|   |+++|+.+
T Consensus       293 -~~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~  327 (412)
T 2vd5_A          293 -LVDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRT  327 (412)
T ss_dssp             -----CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHT
T ss_pred             -ccccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhc
Confidence             1112233568999999998 99998   58888765

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=2.9e-36  Score=335.15  Aligned_cols=240  Identities=18%  Similarity=0.231  Sum_probs=193.6

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||+|+.. +|..||+|++.......  ......+.+|+++|++++|||||++++++.+.+  ..++|||
T Consensus       189 ~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~--~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~--~l~lVmE  264 (576)
T 2acx_A          189 YRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKK--RKGEAMALNEKQILEKVNSRFVVSLAYAYETKD--ALCLVLT  264 (576)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHH--TTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EEEEEEC
T ss_pred             EEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhh--hHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCC--EEEEEEE
Confidence            378999999999999975 68999999997543211  123456889999999999999999999998877  7899999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|+|.+++.......+++..+..++.+|+.||+|||+.+  |+||||||+|||++.++.+||+|||+++....    
T Consensus       265 y~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~g--IvHrDLKPeNILld~~g~vKL~DFGla~~~~~~~~~  342 (576)
T 2acx_A          265 LMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRER--IVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTI  342 (576)
T ss_dssp             CCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECTTSCEEECCCTTCEECCTTCCE
T ss_pred             cCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCC--EeccCCchheEEEeCCCCeEEEecccceecccCccc
Confidence            999999999987555556999999999999999999999998  99999999999999999999999999976532    


Q ss_pred             ----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCC--ChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          530 ----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG--SLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       530 ----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                          ....+.+||......++.++|||||||++|||+||+.||.....  ...+..........           .++..
T Consensus       343 ~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~~~~-----------~~p~~  411 (576)
T 2acx_A          343 KGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVPE-----------EYSER  411 (576)
T ss_dssp             ECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHHCCC-----------CCCTT
T ss_pred             cccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhcccc-----------cCCcc
Confidence                23456678887777789999999999999999999999964322  22222222222111           11222


Q ss_pred             HHHHHHHHHHHhccCCCCCCC-----CHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRP-----TMRDIAA  631 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RP-----s~~ev~~  631 (664)
                      ...++.+++.+||+.||++||     ++.||++
T Consensus       412 ~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~  444 (576)
T 2acx_A          412 FSPQARSLCSQLLCKDPAERLGCRGGSAREVKE  444 (576)
T ss_dssp             SCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred             CCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence            335689999999999999999     6788764

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=1.1e-36  Score=325.05  Aligned_cols=247  Identities=8%  Similarity=0.044  Sum_probs=171.7

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc--CCCcccceE-------EEEecC
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV--NHKNFVNLI-------GFCEEE  443 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l--~H~niv~l~-------g~~~~~  443 (664)
                      +.+.||+|+||.||+|+.. +++.||||++.......  ....+.+.+|+++++.+  +||||++++       +++...
T Consensus        66 ~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~~~  143 (371)
T 3q60_A           66 LVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENS--RSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVAVQ  143 (371)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTH--HHHHHHHHHHHHHHHHHHC----------CBCCCCEEEEET
T ss_pred             eeeeccCCCCEEEEEEEECCCCceeEEEEEEeccccc--ccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehheecC
Confidence            3478999999999999965 78999999997654322  34456788885544444  699988754       444332


Q ss_pred             CC---------------ceeEEEEEecCCCChhhhhcccCCCCCCHHHH------HHHHHHHHHHHHHhhcCCCCeEEeC
Q 006019          444 EP---------------FTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR------LRIAMGMAYCLEHMHQLNPPIAHNY  502 (664)
Q Consensus       444 ~~---------------~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~------~~ia~~ia~gL~yLH~~~~~ivHrD  502 (664)
                      +.               ...++|||||+ |+|.+++... ...+.+..+      ..|+.+++.||+|||+.+  |+|||
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~-~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~--ivHrD  219 (371)
T 3q60_A          144 SQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTL-DFVYVFRGDEGILALHILTAQLIRLAANLQSKG--LVHGH  219 (371)
T ss_dssp             TSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHH-HHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTT--EEETT
T ss_pred             CCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHh-ccccchhhhhhhhhHHHHHHHHHHHHHHHHHCC--CccCc
Confidence            21               23699999999 8999999743 223455566      788899999999999999  99999


Q ss_pred             cCCCCeEecCCCceEecccCchhhhhhh------hhhcccccccCC--CCCCcCCcchhhHHHHHHHHhCCCCccCCCCC
Q 006019          503 LNSSAVHLTEDYAAKLSDLSFWNEIAMA------EMAATSKKLSSA--PSASLESNVYNFGVLLFEMVTGRLPYLVDNGS  574 (664)
Q Consensus       503 Lk~~NILld~~~~~kl~DfGla~~~~~~------~~~~~~pe~~~~--~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~  574 (664)
                      |||+|||++.++.+||+|||+++.....      ...+.+||....  ..++.++|||||||++|||+||+.||......
T Consensus       220 ikp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~  299 (371)
T 3q60_A          220 FTPDNLFIMPDGRLMLGDVSALWKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPG  299 (371)
T ss_dssp             CSGGGEEECTTSCEEECCGGGEEETTCEEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCCTT
T ss_pred             CCHHHEEECCCCCEEEEecceeeecCCCccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCcCcc
Confidence            9999999999999999999998765322      245677888766  67899999999999999999999999543211


Q ss_pred             hHHHHHHHhcCCCCCccccCCCC-CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          575 LEDWAADYLSGVQPLQQFVDPTL-SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ...    .... ........... .......+..+.+++.+||+.||++||++.++++
T Consensus       300 ~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  352 (371)
T 3q60_A          300 IKG----SWKR-PSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAME  352 (371)
T ss_dssp             CTT----CCCB-CCTTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTT
T ss_pred             ccc----chhh-hhhhhccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            000    0000 00000000000 0111234467899999999999999999999864

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=6.2e-36  Score=305.30  Aligned_cols=238  Identities=20%  Similarity=0.320  Sum_probs=189.2

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. +++.||||.+.......  ....+.+.+|++++++++||||+++++++...+  ..++||
T Consensus        15 i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   90 (276)
T 2h6d_A           15 LGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRS--LDVVGKIKREIQNLKLFRHPHIIKLYQVISTPT--DFFMVM   90 (276)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHH--TTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             EEeeecCCCCeEEEEEEECCCCceEEEEEeccccccc--hhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCC--eEEEEE
Confidence            4578999999999999976 68999999986533211  123467899999999999999999999998876  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++++|.+++...  ..+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++.....  
T Consensus        91 e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~  166 (276)
T 2h6d_A           91 EYVSGGELFDYICKH--GRVEEMEARRLFQQILSAVDYCHRHM--VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEF  166 (276)
T ss_dssp             ECCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHHC--SSCCCCCGGGEEECTTSCEEECCCCGGGCCCC---
T ss_pred             eccCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCC--CccCCCChhhEEECCCCCEEEeecccccccCCCcc
Confidence            999999999998643  45899999999999999999999998  999999999999999999999999998765321  


Q ss_pred             ------hhhcccccccCCCCC-CcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          531 ------EMAATSKKLSSAPSA-SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       531 ------~~~~~~pe~~~~~~~-s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                            ...+.+||....... +.++||||||+++|||+||+.||..  ....+...........           .+..
T Consensus       167 ~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~--~~~~~~~~~~~~~~~~-----------~~~~  233 (276)
T 2h6d_A          167 LRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDD--EHVPTLFKKIRGGVFY-----------IPEY  233 (276)
T ss_dssp             ----------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCC-----------CCTT
T ss_pred             eecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCC--CcHHHHHHHhhcCccc-----------Cchh
Confidence                  234567887765544 6899999999999999999999943  3333333333222111           1122


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      ....+.+++.+||+.||++||++.|+++.
T Consensus       234 ~~~~l~~li~~~l~~~p~~Rps~~~~l~h  262 (276)
T 2h6d_A          234 LNRSVATLLMHMLQVDPLKRATIKDIREH  262 (276)
T ss_dssp             SCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred             cCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence            23568899999999999999999999873

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.2e-36  Score=319.53  Aligned_cols=251  Identities=17%  Similarity=0.182  Sum_probs=185.1

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. +|+.||||++.............+.+.+|++++++++||||+++++++.+.+  ..++||
T Consensus        14 ~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~   91 (346)
T 1ua2_A           14 KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKS--NISLVF   91 (346)
T ss_dssp             EEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTT--CCEEEE
T ss_pred             EEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCC--ceEEEE
Confidence            4588999999999999975 5899999998754332211222356889999999999999999999998776  669999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++ +|.+++.. ....+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....  
T Consensus        92 e~~~~-~l~~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~  167 (346)
T 1ua2_A           92 DFMET-DLEVIIKD-NSLVLTPSHIKAYMLMTLQGLEYLHQHW--ILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNR  167 (346)
T ss_dssp             ECCSE-EHHHHHTT-CCSSCCSSHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCC
T ss_pred             EcCCC-CHHHHHHh-cCcCCCHHHHHHHHHHHHHHHHHHHHCC--EECCCCCHHHEEEcCCCCEEEEecccceeccCCcc
Confidence            99986 88888763 3456889999999999999999999999  999999999999999999999999999865321  


Q ss_pred             -------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCC-----CCCcc------
Q 006019          531 -------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV-----QPLQQ------  591 (664)
Q Consensus       531 -------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~-----~~~~~------  591 (664)
                             ...+.+||.... ..++.++|||||||++|||++|+.||...  ...+.........     .....      
T Consensus       168 ~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  245 (346)
T 1ua2_A          168 AYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGD--SDLDQLTRIFETLGTPTEEQWPDMCSLPD  245 (346)
T ss_dssp             CCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHHHCCCCTTTSSSTTSSTT
T ss_pred             cCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCC--CHHHHHHHHHHHcCCCChhhhhhhccCcc
Confidence                   223556776644 45788999999999999999999998432  2222222222110     00000      


Q ss_pred             ccC-CCCCCCC-----HHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          592 FVD-PTLSSFD-----EEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       592 ~~d-~~~~~~~-----~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      .+. ......+     ......+.+++.+||+.||++|||+.|+++.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  292 (346)
T 1ua2_A          246 YVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKM  292 (346)
T ss_dssp             CCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             cccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcC
Confidence            000 0001111     2234678999999999999999999998874

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=2.3e-36  Score=324.59  Aligned_cols=248  Identities=16%  Similarity=0.214  Sum_probs=179.9

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.+.||+|+||.||+|... +|..||||++.....   .....+.+.+|+.++++++ ||||+++++++...+....++|
T Consensus        13 ~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~---~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~~lv   89 (388)
T 3oz6_A           13 LVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQ---NSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDVYLV   89 (388)
T ss_dssp             EEEC-------CEEEEEETTTCCEEEEEEECC--C---CHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCEEEE
T ss_pred             EEEEeeeCCCeEEEEEEECCCCCEEEEEEeccccc---ChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEEEEE
Confidence            4488999999999999964 689999999854322   1344567889999999997 9999999999976554467999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh--
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM--  529 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~--  529 (664)
                      ||||+ |+|.++++.   ..+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....  
T Consensus        90 ~e~~~-~~L~~~~~~---~~~~~~~~~~i~~qi~~~L~~LH~~~--ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~  163 (388)
T 3oz6_A           90 FDYME-TDLHAVIRA---NILEPVHKQYVVYQLIKVIKYLHSGG--LLHRDMKPSNILLNAECHVKVADFGLSRSFVNIR  163 (388)
T ss_dssp             EECCS-EEHHHHHHH---TCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECTTCCEEECCCTTCEESSSCC
T ss_pred             ecccC-cCHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHhCC--EEeCCCCHHHeEEcCCCCEEecCCcccccccccc
Confidence            99998 689988863   46899999999999999999999999  99999999999999999999999999975421  


Q ss_pred             ----------------------------hhhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHH
Q 006019          530 ----------------------------AEMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAA  580 (664)
Q Consensus       530 ----------------------------~~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~  580 (664)
                                                  .+..+.+||...+ ..++.++|||||||++|||+||+.||...  +..+...
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~--~~~~~~~  241 (388)
T 3oz6_A          164 RVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGS--STMNQLE  241 (388)
T ss_dssp             CCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHH
T ss_pred             cccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHH
Confidence                                        2334567886654 67899999999999999999999999532  2222222


Q ss_pred             HHhcCCCC-Ccccc----------------------CCCCCCC-------------CHHHHHHHHHHHHHhccCCCCCCC
Q 006019          581 DYLSGVQP-LQQFV----------------------DPTLSSF-------------DEEQLETLGELIKSCVRADPEKRP  624 (664)
Q Consensus       581 ~~~~~~~~-~~~~~----------------------d~~~~~~-------------~~~~~~~l~~l~~~Cl~~~P~~RP  624 (664)
                      .++..... .....                      .......             ......++.+++.+||+.||++||
T Consensus       242 ~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~  321 (388)
T 3oz6_A          242 RIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNPNKRI  321 (388)
T ss_dssp             HHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSGGGSC
T ss_pred             HHHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCcccCC
Confidence            22110000 00000                      0000000             002235688999999999999999


Q ss_pred             CHHHHHHH
Q 006019          625 TMRDIAAI  632 (664)
Q Consensus       625 s~~ev~~~  632 (664)
                      |+.|+++.
T Consensus       322 t~~e~l~H  329 (388)
T 3oz6_A          322 SANDALKH  329 (388)
T ss_dssp             CHHHHTTS
T ss_pred             CHHHHhCC
Confidence            99998875

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=1.8e-36  Score=317.84  Aligned_cols=246  Identities=14%  Similarity=0.197  Sum_probs=181.8

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. +++.||||++......   ....+.+.+|++++++++||||+++++++.+.+  ..++||
T Consensus        38 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~  112 (329)
T 3gbz_A           38 RITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEE---EGVPGTAIREVSLLKELQHRNIIELKSVIHHNH--RLHLIF  112 (329)
T ss_dssp             EEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC-----------CHHHHHHGGGCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             EEEEEEecCCeEEEEEEECCCCceEEEEEEcccccc---cccchhHHHHHHHHHHcCCCCcceEEEEEecCC--EEEEEE
Confidence            3478999999999999854 6899999998654322   233457889999999999999999999998877  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEe-----cCCCceEecccCchhhh
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL-----TEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILl-----d~~~~~kl~DfGla~~~  527 (664)
                      ||++ |+|.+++..  ...+++..+..|+.+++.||+|||+.+  |+||||||+|||+     ++++.+||+|||+++..
T Consensus       113 e~~~-~~L~~~~~~--~~~~~~~~~~~i~~ql~~~l~~LH~~~--ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~  187 (329)
T 3gbz_A          113 EYAE-NDLKKYMDK--NPDVSMRVIKSFLYQLINGVNFCHSRR--CLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAF  187 (329)
T ss_dssp             ECCS-EEHHHHHHH--CTTCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEEC-----CCEEEECCTTHHHHH
T ss_pred             ecCC-CCHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHhCC--EECCCCCHHHEEEecCCCCccceEEECcCCCcccc
Confidence            9998 599999864  345899999999999999999999998  9999999999999     45566999999999865


Q ss_pred             hhh---------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCC-----CCc--
Q 006019          528 AMA---------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-----PLQ--  590 (664)
Q Consensus       528 ~~~---------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~-----~~~--  590 (664)
                      ...         ...+.+||.... ..++.++|||||||++|||+||+.||...  ...+..........     ...  
T Consensus       188 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~--~~~~~~~~~~~~~~~~~~~~~~~~  265 (329)
T 3gbz_A          188 GIPIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGD--SEIDQLFKIFEVLGLPDDTTWPGV  265 (329)
T ss_dssp             C-----------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHHHCCCCTTTSTTG
T ss_pred             CCcccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCC--CHHHHHHHHHHHhCCCchhhhhhh
Confidence            321         234567887655 45799999999999999999999999432  22222222221100     000  


Q ss_pred             ----ccc--CCCCCCC------CHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          591 ----QFV--DPTLSSF------DEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       591 ----~~~--d~~~~~~------~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                          ...  .+.....      +.....++.+++.+||+.||++|||+.|+++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  318 (329)
T 3gbz_A          266 TALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE  318 (329)
T ss_dssp             GGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             hhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence                000  0000000      0113357889999999999999999999875

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=4.9e-36  Score=309.07  Aligned_cols=237  Identities=20%  Similarity=0.280  Sum_probs=184.7

Q ss_pred             cccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      ..||+|+||.||+|+. .++..||||.+.....     ...+.+.+|+.++++++||||+++++++...+  ..++||||
T Consensus        28 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-----~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~e~  100 (295)
T 2clq_A           28 VVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDS-----RYSQPLHEEIALHKHLKHKNIVQYLGSFSENG--FIKIFMEQ  100 (295)
T ss_dssp             CEEEECSSSEEEEEEETTTCCEEEEEEEECCCC--------HHHHHHHHHHHTCCCTTBCCEEEEEEETT--EEEEEEEC
T ss_pred             EEEeecCcEEEEEEEECCCCeEEEEEEccCCch-----HHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCC--cEEEEEEe
Confidence            4799999999999996 4688999999865432     23467999999999999999999999998877  67999999


Q ss_pred             cCCCChhhhhcccC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecC-CCceEecccCchhhhhh---
Q 006019          455 APNGTLFEHIHIKE-SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE-DYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       455 ~~~GsL~~~l~~~~-~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~-~~~~kl~DfGla~~~~~---  529 (664)
                      +++|+|.+++.... ...+++..+..++.+++.||+|||+.+  ++||||||+||+++. ++.+||+|||+++....   
T Consensus       101 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~  178 (295)
T 2clq_A          101 VPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQ--IVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINP  178 (295)
T ss_dssp             CSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEETTTCCEEECCTTTCEESCC---
T ss_pred             CCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhCC--EEccCCChhhEEEECCCCCEEEeecccccccCCCCC
Confidence            99999999987542 345678999999999999999999998  999999999999997 89999999999876532   


Q ss_pred             ------hhhhcccccccCCC--CCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 006019          530 ------AEMAATSKKLSSAP--SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  601 (664)
Q Consensus       530 ------~~~~~~~pe~~~~~--~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  601 (664)
                            ....+.+||.....  .++.++||||||+++|||+||+.||.................       ..+   ..+
T Consensus       179 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~-------~~~---~~~  248 (295)
T 2clq_A          179 CTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMFK-------VHP---EIP  248 (295)
T ss_dssp             --CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHHHC-------CCC---CCC
T ss_pred             cccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhcccc-------ccc---ccc
Confidence                  12344566655332  378899999999999999999999953322221111111111       011   112


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          602 EEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       602 ~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .....++.+++.+||+.||++||++.++++
T Consensus       249 ~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  278 (295)
T 2clq_A          249 ESMSAEAKAFILKCFEPDPDKRACANDLLV  278 (295)
T ss_dssp             TTSCHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred             ccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            233456889999999999999999999875

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=1.8e-36  Score=345.65  Aligned_cols=245  Identities=19%  Similarity=0.311  Sum_probs=196.6

Q ss_pred             hhhhcccccCCCeEEEEEEECC----CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCce
Q 006019          372 EDFSNVIGSSPIGTVYKGTLSN----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  447 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~~~----~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  447 (664)
                      ..+.+.||+|+||.||+|++..    +..||+|.+....    .....+.|.+|+.++++++||||++++|++.+ +  .
T Consensus       392 y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~-~--~  464 (656)
T 2j0j_A          392 IELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCT----SDSVREKFLQEALTMRQFDHPHIVKLIGVITE-N--P  464 (656)
T ss_dssp             EEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTT----CHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-S--S
T ss_pred             EEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccC----CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEec-C--c
Confidence            3445889999999999999743    4578888775322    23455789999999999999999999999864 3  4


Q ss_pred             eEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhh
Q 006019          448 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~  527 (664)
                      .++||||+++|+|.++++. ....+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++..
T Consensus       465 ~~lv~E~~~~g~L~~~l~~-~~~~l~~~~~~~i~~qi~~aL~~LH~~g--ivHrDikp~NILl~~~~~vkL~DFG~a~~~  541 (656)
T 2j0j_A          465 VWIIMELCTLGELRSFLQV-RKFSLDLASLILYAYQLSTALAYLESKR--FVHRDIAARNVLVSSNDCVKLGDFGLSRYM  541 (656)
T ss_dssp             CEEEEECCTTCBHHHHHHH-TTTTCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEEEETTEEEECCCCCCCSC
T ss_pred             eEEEEEcCCCCcHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHhCC--ccccccchHhEEEeCCCCEEEEecCCCeec
Confidence            5899999999999999964 3456999999999999999999999998  999999999999999999999999998765


Q ss_pred             hhh----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCC
Q 006019          528 AMA----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  596 (664)
Q Consensus       528 ~~~----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  596 (664)
                      ...          ...+.+||......++.++|||||||++|||+| |+.||..  ....+.......+..         
T Consensus       542 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~--~~~~~~~~~i~~~~~---------  610 (656)
T 2j0j_A          542 EDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQG--VKNNDVIGRIENGER---------  610 (656)
T ss_dssp             CC----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTT--CCHHHHHHHHHHTCC---------
T ss_pred             CCCcceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCC--CCHHHHHHHHHcCCC---------
Confidence            321          134667887766778999999999999999998 9999943  233333333332211         


Q ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          597 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       597 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                       ...+..++..+.+++.+||+.||++||++.++++.|+++.+
T Consensus       611 -~~~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il~  651 (656)
T 2j0j_A          611 -LPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILE  651 (656)
T ss_dssp             -CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -CCCCccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHH
Confidence             11223344678999999999999999999999999999864

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=8.5e-36  Score=308.47  Aligned_cols=238  Identities=16%  Similarity=0.216  Sum_probs=187.4

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. ++..+|+|.+......     ..+.|.+|++++++++||||+++++++...+  ..++||
T Consensus        23 i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~-----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   95 (302)
T 2j7t_A           23 IVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEE-----ELEDYIVEIEILATCDHPYIVKLLGAYYHDG--KLWIMI   95 (302)
T ss_dssp             EEEEEECSTTCCEEEEEETTTCCEEEEEEEC----C-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECC---CEEEEE
T ss_pred             ecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHH-----HHHHHHHHHHHHhcCCCCCEeeeeeeeeeCC--eEEEEE
Confidence            4478999999999999976 5889999988654322     2467999999999999999999999998876  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++|+|.+++.. ....+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||++.....   
T Consensus        96 e~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  172 (302)
T 2j7t_A           96 EFCPGGAVDAIMLE-LDRGLTEPQIQVVCRQMLEALNFLHSKR--IIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQ  172 (302)
T ss_dssp             ECCTTEEHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHHH
T ss_pred             EeCCCCcHHHHHHh-hccCCCHHHHHHHHHHHHHHHHHHhcCC--cccCCCCHHHEEECCCCCEEEEECCCCcccccccc
Confidence            99999999998863 2356999999999999999999999998  99999999999999999999999998764422   


Q ss_pred             ------hhhhccccccc-----CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 006019          530 ------AEMAATSKKLS-----SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       530 ------~~~~~~~pe~~-----~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                            ....+.+||..     ....++.++||||||+++|||+||+.||..  ....+...........  .      .
T Consensus       173 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~--~~~~~~~~~~~~~~~~--~------~  242 (302)
T 2j7t_A          173 KRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHE--LNPMRVLLKIAKSDPP--T------L  242 (302)
T ss_dssp             C-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTT--SCHHHHHHHHHHSCCC--C------C
T ss_pred             ccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCcc--CCHHHHHHHHhccCCc--c------c
Confidence                  12345577765     356678999999999999999999999943  2233333332222110  0      0


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ..+...+..+.+++.+||+.||++||++.++++
T Consensus       243 ~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  275 (302)
T 2j7t_A          243 LTPSKWSVEFRDFLKIALDKNPETRPSAAQLLE  275 (302)
T ss_dssp             SSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred             CCccccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence            112233457899999999999999999998875

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=9.6e-36  Score=308.40  Aligned_cols=237  Identities=16%  Similarity=0.255  Sum_probs=192.1

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      ..+.||+|+||.||+|+.. ++..||+|++......    ...+.+.+|+.++++++||||+++++++...+  ..++||
T Consensus        26 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   99 (303)
T 3a7i_A           26 KLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAE----DEIEDIQQEITVLSQCDSPYVTKYYGSYLKDT--KLWIIM   99 (303)
T ss_dssp             EEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCS----TTHHHHHHHHHHHHHCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             HhhhhcccCCeEEEEEEECCCCcEEEEEEecccccH----HHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC--eEEEEE
Confidence            3478999999999999864 6889999998754432    23567999999999999999999999998876  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++|+|.+++.   ...+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++....   
T Consensus       100 e~~~~~~L~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~  174 (303)
T 3a7i_A          100 EYLGGGSALDLLE---PGPLDETQIATILREILKGLDYLHSEK--KIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQI  174 (303)
T ss_dssp             ECCTTEEHHHHHT---TSCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTSCEEECCCTTCEECBTTBC
T ss_pred             EeCCCCcHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHCC--CccCCCChheEEECCCCCEEEeecccceecCcccc
Confidence            9999999999985   346899999999999999999999998  99999999999999999999999999875532   


Q ss_pred             ------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          530 ------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       530 ------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                            ....+.+||......++.++||||||+++|||+||+.||..  ....+..........       +   ..+..
T Consensus       175 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~--~~~~~~~~~~~~~~~-------~---~~~~~  242 (303)
T 3a7i_A          175 KRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSE--LHPMKVLFLIPKNNP-------P---TLEGN  242 (303)
T ss_dssp             CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTT--SCHHHHHHHHHHSCC-------C---CCCSS
T ss_pred             ccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCC--cCHHHHHHHhhcCCC-------C---CCccc
Confidence                  12345678887777888999999999999999999999943  222222222221110       1   11122


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAAIL  633 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L  633 (664)
                      .+..+.+++.+||+.||++||++.++++..
T Consensus       243 ~~~~l~~li~~~l~~dp~~Rps~~~ll~~~  272 (303)
T 3a7i_A          243 YSKPLKEFVEACLNKEPSFRPTAKELLKHK  272 (303)
T ss_dssp             CCHHHHHHHHHHCCSSGGGSCCHHHHTTCH
T ss_pred             cCHHHHHHHHHHcCCChhhCcCHHHHhhCh
Confidence            235688999999999999999999998753

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=2.8e-35  Score=313.32  Aligned_cols=242  Identities=21%  Similarity=0.332  Sum_probs=189.4

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCc---hhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWP---KNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRM  449 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~---~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~  449 (664)
                      .+.||+|+||.||+|+.. +|..||||++.........   ....+.+.+|+++++++ +||||+++++++....  ..+
T Consensus        99 ~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~--~~~  176 (365)
T 2y7j_A           99 KDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSS--FMF  176 (365)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEBSS--EEE
T ss_pred             ceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEeeCC--EEE
Confidence            389999999999999985 6999999998754422111   12345788999999999 7999999999998776  779


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                      +||||+++|+|.+++..  ...+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||++.....
T Consensus       177 lv~e~~~g~~L~~~l~~--~~~l~~~~~~~i~~qi~~~L~~LH~~g--i~H~Dlkp~NIl~~~~~~ikl~DfG~~~~~~~  252 (365)
T 2y7j_A          177 LVFDLMRKGELFDYLTE--KVALSEKETRSIMRSLLEAVSFLHANN--IVHRDLKPENILLDDNMQIRLSDFGFSCHLEP  252 (365)
T ss_dssp             EEECCCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECTTCCEEECCCTTCEECCT
T ss_pred             EEEEeCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEECCCCCEEEEecCcccccCC
Confidence            99999999999999863  346999999999999999999999998  99999999999999999999999999876532


Q ss_pred             --------hhhhcccccccC------CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCC
Q 006019          530 --------AEMAATSKKLSS------APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  595 (664)
Q Consensus       530 --------~~~~~~~pe~~~------~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~  595 (664)
                              ....+.+||...      ...++.++|||||||++|||+||+.||..  ..................   .+
T Consensus       253 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~--~~~~~~~~~i~~~~~~~~---~~  327 (365)
T 2y7j_A          253 GEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWH--RRQILMLRMIMEGQYQFS---SP  327 (365)
T ss_dssp             TCCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHTCCCCC---HH
T ss_pred             CcccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCC--CCHHHHHHHHHhCCCCCC---Cc
Confidence                    123456677543      33578899999999999999999999943  222233322222211110   00


Q ss_pred             CCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          596 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       596 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ...    ..+..+.+++.+||+.||++||++.++++
T Consensus       328 ~~~----~~~~~~~~li~~~L~~dP~~Rps~~ell~  359 (365)
T 2y7j_A          328 EWD----DRSSTVKDLISRLLQVDPEARLTAEQALQ  359 (365)
T ss_dssp             HHS----SSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             ccc----cCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            001    12346889999999999999999999886

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=1.1e-35  Score=328.62  Aligned_cols=242  Identities=20%  Similarity=0.260  Sum_probs=193.7

Q ss_pred             hhhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEE
Q 006019          372 EDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  450 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~l  450 (664)
                      +.+.+.||+|+||.||+|+.. ++..||||++.......  ....+.+.+|++++++++|||||++++++.+.+  ..++
T Consensus        28 y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~--~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~--~~~l  103 (484)
T 3nyv_A           28 YKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQ--KTDKESLLREVQLLKQLDHPNIMKLYEFFEDKG--YFYL  103 (484)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCB--SSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--EEEE
T ss_pred             eEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhccc--chHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC--EEEE
Confidence            445689999999999999975 68999999987543322  223567999999999999999999999998876  7799


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEe---cCCCceEecccCchhhh
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL---TEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILl---d~~~~~kl~DfGla~~~  527 (664)
                      ||||+++|+|.+++..  ...+++..+..|+.+++.||+|||+.+  |+||||||+|||+   +.++.+||+|||+++..
T Consensus       104 v~e~~~~~~L~~~~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~~--ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~  179 (484)
T 3nyv_A          104 VGEVYTGGELFDEIIS--RKRFSEVDAARIIRQVLSGITYMHKNK--IVHRDLKPENLLLESKSKDANIRIIDFGLSTHF  179 (484)
T ss_dssp             EECCCCSCBHHHHHHT--CSCCBHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEESSSSTTCCEEECCTTHHHHB
T ss_pred             EEecCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEc
Confidence            9999999999998863  456999999999999999999999998  9999999999999   56789999999998765


Q ss_pred             hh--------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 006019          528 AM--------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  599 (664)
Q Consensus       528 ~~--------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  599 (664)
                      ..        ....+.+||...+ .++.++||||+||++|||+||+.||..  ....+.......+.....   .+.   
T Consensus       180 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~--~~~~~~~~~i~~~~~~~~---~~~---  250 (484)
T 3nyv_A          180 EASKKMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNG--ANEYDILKKVEKGKYTFE---LPQ---  250 (484)
T ss_dssp             CCCCSHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCCCC---SGG---
T ss_pred             ccccccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHcCCCCCC---Ccc---
Confidence            32        2345667877654 588999999999999999999999943  333344443333211110   011   


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          600 FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       600 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                       ....+..+.+++.+||+.||++|||+.|+++
T Consensus       251 -~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~  281 (484)
T 3nyv_A          251 -WKKVSESAKDLIRKMLTYVPSMRISARDALD  281 (484)
T ss_dssp             -GGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             -cccCCHHHHHHHHHHCCCChhHCcCHHHHhh
Confidence             1223456889999999999999999999986

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=1.1e-35  Score=322.20  Aligned_cols=242  Identities=20%  Similarity=0.257  Sum_probs=183.1

Q ss_pred             hhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCC---chhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          373 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDW---PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      .+.+.||+|+||.||+|... ++..||||++........   .......+.+|+++|++++|||||++++++...   ..
T Consensus       138 ~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~---~~  214 (419)
T 3i6u_A          138 IMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE---DY  214 (419)
T ss_dssp             EEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEESS---EE
T ss_pred             EEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEecC---ce
Confidence            34588999999999999965 578999999876432211   011223588999999999999999999998643   46


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCC---CceEecccCchh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED---YAAKLSDLSFWN  525 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~---~~~kl~DfGla~  525 (664)
                      ++||||+++|+|.+++.  ....+++..+..++.+++.||+|||+.+  |+||||||+|||++.+   +.+||+|||+++
T Consensus       215 ~lv~e~~~~g~L~~~l~--~~~~~~~~~~~~i~~qi~~~l~~LH~~~--ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~  290 (419)
T 3i6u_A          215 YIVLELMEGGELFDKVV--GNKRLKEATCKLYFYQMLLAVQYLHENG--IIHRDLKPENVLLSSQEEDCLIKITDFGHSK  290 (419)
T ss_dssp             EEEEECCTTCBGGGGTS--SSCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEESSSSSSCCEEECCSSTTT
T ss_pred             EEEEEcCCCCcHHHHHh--ccCCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCChHhEEEecCCCcceEEEeecccce
Confidence            89999999999999886  3456999999999999999999999998  9999999999999754   459999999998


Q ss_pred             hhhhh--------hhhcccccccC---CCCCCcCCcchhhHHHHHHHHhCCCCccCCCC--ChHHHHHHHhcCCCCCccc
Q 006019          526 EIAMA--------EMAATSKKLSS---APSASLESNVYNFGVLLFEMVTGRLPYLVDNG--SLEDWAADYLSGVQPLQQF  592 (664)
Q Consensus       526 ~~~~~--------~~~~~~pe~~~---~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~--~~~~~~~~~~~~~~~~~~~  592 (664)
                      .....        ...+.+||...   ...++.++|||||||++|||+||+.||.....  .+.+.   .......... 
T Consensus       291 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~~~~---i~~~~~~~~~-  366 (419)
T 3i6u_A          291 ILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQ---ITSGKYNFIP-  366 (419)
T ss_dssp             SCC-----------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCHHHH---HHTTCCCCCH-
T ss_pred             ecCCCccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHHHHH---HhcCCCCCCc-
Confidence            65422        33456788764   35678899999999999999999999953221  11111   1111100000 


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          593 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       593 ~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                            .........+.+++.+||+.||++||++.|+++
T Consensus       367 ------~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~  399 (419)
T 3i6u_A          367 ------EVWAEVSEKALDLVKKLLVVDPKARFTTEEALR  399 (419)
T ss_dssp             ------HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             ------hhhcccCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence                  000112356889999999999999999999886

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=6.5e-36  Score=315.93  Aligned_cols=252  Identities=13%  Similarity=0.182  Sum_probs=193.9

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCc------------hhHHHHHHHHHHHHhccCCCcccceEEEEe
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWP------------KNLEVQFRKKIDTLSKVNHKNFVNLIGFCE  441 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~------------~~~~~~f~~E~~~l~~l~H~niv~l~g~~~  441 (664)
                      +.+.||+|+||.||+|+. ++..||+|.+.........            ....+.|.+|++++++++||||+++++++.
T Consensus        35 ~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~  113 (348)
T 2pml_X           35 IIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCEGIIT  113 (348)
T ss_dssp             EEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCCSEEEE
T ss_pred             EEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceEEEEEe
Confidence            447899999999999999 8999999999754332210            011268999999999999999999999998


Q ss_pred             cCCCceeEEEEEecCCCChhhh------hcccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEEeCcCCCCeEecCCC
Q 006019          442 EEEPFTRMMVFEYAPNGTLFEH------IHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDY  514 (664)
Q Consensus       442 ~~~~~~~~lV~Ey~~~GsL~~~------l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~-~~~~ivHrDLk~~NILld~~~  514 (664)
                      +.+  ..++||||+++|+|.++      +.......+++..+..++.+++.||+|||+ .+  ++||||||+||+++.++
T Consensus       114 ~~~--~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~--i~H~dl~p~Nil~~~~~  189 (348)
T 2pml_X          114 NYD--EVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKN--ICHRDVKPSNILMDKNG  189 (348)
T ss_dssp             SSS--EEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTSC--EECCCCCGGGEEECTTS
T ss_pred             eCC--eEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccCC--EeecCCChHhEEEcCCC
Confidence            877  77999999999999998      654446789999999999999999999998 88  99999999999999999


Q ss_pred             ceEecccCchhhhhh-------hhhhcccccccCCC-CCCc-CCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcC
Q 006019          515 AAKLSDLSFWNEIAM-------AEMAATSKKLSSAP-SASL-ESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG  585 (664)
Q Consensus       515 ~~kl~DfGla~~~~~-------~~~~~~~pe~~~~~-~~s~-ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~  585 (664)
                      .+||+|||+++....       ....+.+||..... .++. ++||||||+++|||+||+.||..... ..+........
T Consensus       190 ~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-~~~~~~~i~~~  268 (348)
T 2pml_X          190 RVKLSDFGESEYMVDKKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKIS-LVELFNNIRTK  268 (348)
T ss_dssp             CEEECCCTTCEECBTTEECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSC-SHHHHHHHTSC
T ss_pred             cEEEeccccccccccccccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCc-HHHHHHHHhcc
Confidence            999999999876432       23445678877665 5555 99999999999999999999953322 13333333322


Q ss_pred             CCCCcc----ccCCCC----CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          586 VQPLQQ----FVDPTL----SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       586 ~~~~~~----~~d~~~----~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ......    ...+..    .......+..+.+++.+||+.||++||++.|+++
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~  322 (348)
T 2pml_X          269 NIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK  322 (348)
T ss_dssp             CCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             CcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            111110    000000    0011234467899999999999999999999886

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=100.00  E-value=4.9e-36  Score=308.05  Aligned_cols=230  Identities=14%  Similarity=0.179  Sum_probs=180.4

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. +++.||||.+.......  ....+.|.+|++.+++++||||+++++++...+  ..++||
T Consensus        35 i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~--~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~--~~~lv~  110 (286)
T 3uqc_A           35 LLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLP--DDVLQETLSRTLRLSRIDKPGVARVLDVVHTRA--GGLVVA  110 (286)
T ss_dssp             EEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSC--HHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             EEEEEcccCCeEEEEEEecCCCceEEEEEECcccccC--HHHHHHHHHHHHHHhcCCCCCcceeeEEEEECC--cEEEEE
Confidence            4478999999999999975 48999999987543322  345578999999999999999999999998877  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhhhh
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM  532 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~~~  532 (664)
                      ||+++++|.+++...    .......+|+.+++.||+|||+.+  |+||||||+|||++.++.+||+++|..        
T Consensus       111 e~~~g~~L~~~l~~~----~~~~~~~~i~~ql~~aL~~lH~~g--ivH~Dikp~NIll~~~g~~kl~~~~~~--------  176 (286)
T 3uqc_A          111 EWIRGGSLQEVADTS----PSPVGAIRAMQSLAAAADAAHRAG--VALSIDHPSRVRVSIDGDVVLAYPATM--------  176 (286)
T ss_dssp             ECCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCSGGGEEEETTSCEEECSCCCC--------
T ss_pred             EecCCCCHHHHHhcC----CChHHHHHHHHHHHHHHHHHHHCC--CccCCCCcccEEEcCCCCEEEEecccc--------
Confidence            999999999998532    355678899999999999999998  999999999999999999999977642        


Q ss_pred             hcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCC---CCCHHHHHHHH
Q 006019          533 AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS---SFDEEQLETLG  609 (664)
Q Consensus       533 ~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~~l~  609 (664)
                                ..++.++|||||||++|||+||+.||.......         ..............   ......+.++.
T Consensus       177 ----------~~~~~~~Di~slG~il~elltg~~Pf~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~  237 (286)
T 3uqc_A          177 ----------PDANPQDDIRGIGASLYALLVNRWPLPEAGVRS---------GLAPAERDTAGQPIEPADIDRDIPFQIS  237 (286)
T ss_dssp             ----------TTCCHHHHHHHHHHHHHHHHHSEECSCCCSBCC---------CSEECCBCTTSCBCCHHHHCTTSCHHHH
T ss_pred             ----------CCCCchhHHHHHHHHHHHHHHCCCCCCcCCcch---------hhHHHHHHhccCCCChhhcccCCCHHHH
Confidence                      246789999999999999999999995322100         00000000011000   11123446789


Q ss_pred             HHHHHhccCCCCCCCCHHHHHHHHHhhhCCCC
Q 006019          610 ELIKSCVRADPEKRPTMRDIAAILREITGITP  641 (664)
Q Consensus       610 ~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~  641 (664)
                      +++.+||+.||++| |+.|+++.|+++.....
T Consensus       238 ~li~~~l~~dP~~R-s~~el~~~L~~~~~~~~  268 (286)
T 3uqc_A          238 AVAARSVQGDGGIR-SASTLLNLMQQATAVAD  268 (286)
T ss_dssp             HHHHHHHCTTSSCC-CHHHHHHHHHHHHC---
T ss_pred             HHHHHHcccCCccC-CHHHHHHHHHHHhccCC
Confidence            99999999999999 99999999999986543

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=100.00  E-value=2.9e-36  Score=314.54  Aligned_cols=245  Identities=17%  Similarity=0.314  Sum_probs=186.2

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.+.||+|+||.||+|+..+  .+|+|++.......   ...+.|.+|++++++++||||+++++++.+.+  ..++|||
T Consensus        37 ~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~~iv~e  109 (319)
T 2y4i_B           37 IGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNE---DQLKAFKREVMAYRQTRHENVVLFMGACMSPP--HLAIITS  109 (319)
T ss_dssp             CCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCC---CCCCCCCTTGGGGTTCCCTTBCCCCEEEECSS--CEEEECB
T ss_pred             EeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCH---HHHHHHHHHHHHHhcCCCCCEeEEEEEEecCC--ceEEEee
Confidence            45789999999999999854  48999886543222   12345788999999999999999999999876  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|+|.+++.. ....+++..+..++.+++.||+|||+.+  ++||||||+||+++ ++.+||+|||+++....    
T Consensus       110 ~~~~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~al~~lH~~~--i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~~~  185 (319)
T 2y4i_B          110 LCKGRTLYSVVRD-AKIVLDVNKTRQIAQEIVKGMGYLHAKG--ILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAG  185 (319)
T ss_dssp             CCCSEEHHHHTTS-SCCCCCSHHHHHHHHHHHHHHHHHHHTT--CCCCCCCSTTEEEC---CCEECCCSCCC--------
T ss_pred             cccCCcHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHhCC--ccccCCChhhEEEe-CCCEEEeecCCcccccccccc
Confidence            9999999999964 3456899999999999999999999998  99999999999998 67999999998765421    


Q ss_pred             ----------hhhhcccccccCC---------CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCc
Q 006019          530 ----------AEMAATSKKLSSA---------PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQ  590 (664)
Q Consensus       530 ----------~~~~~~~pe~~~~---------~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~  590 (664)
                                ....+.+||....         ..++.++||||||+++|||+||+.||..  ....+..........  .
T Consensus       186 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~--~~~~~~~~~~~~~~~--~  261 (319)
T 2y4i_B          186 RREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKT--QPAEAIIWQMGTGMK--P  261 (319)
T ss_dssp             --CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSS--CCHHHHHHHHHTTCC--C
T ss_pred             ccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHhccCCC--C
Confidence                      2234456765542         3478899999999999999999999943  233333333322211  1


Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCC
Q 006019          591 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGIT  640 (664)
Q Consensus       591 ~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~  640 (664)
                      .....       ..+.++.+++.+||+.||++||++.++++.|+++.+..
T Consensus       262 ~~~~~-------~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~  304 (319)
T 2y4i_B          262 NLSQI-------GMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRN  304 (319)
T ss_dssp             CCCCS-------SCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC----
T ss_pred             CCCcC-------CCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhh
Confidence            11111       12235889999999999999999999999999987754

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=2.1e-35  Score=326.59  Aligned_cols=242  Identities=20%  Similarity=0.265  Sum_probs=193.4

Q ss_pred             hhhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEE
Q 006019          372 EDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  450 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~l  450 (664)
                      +.+.+.||+|+||.||+|+.. ++..||||++.......   .....+.+|++++++++|||||++++++.+..  ..++
T Consensus        24 y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~--~~~l   98 (486)
T 3mwu_A           24 YNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKN---KDTSTILREVELLKKLDHPNIMKLFEILEDSS--SFYI   98 (486)
T ss_dssp             EEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBC---SCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EEEE
T ss_pred             eEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccc---hHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCC--EEEE
Confidence            445689999999999999975 68999999987543322   12467899999999999999999999998877  6799


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEec---CCCceEecccCchhhh
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT---EDYAAKLSDLSFWNEI  527 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld---~~~~~kl~DfGla~~~  527 (664)
                      ||||+++|+|.+++...  ..+++..+..|+.+++.||+|||+.+  |+||||||+|||++   .++.+||+|||+++..
T Consensus        99 v~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~qi~~al~~lH~~~--ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~  174 (486)
T 3mwu_A           99 VGELYTGGELFDEIIKR--KRFSEHDAARIIKQVFSGITYMHKHN--IVHRDLKPENILLESKEKDCDIKIIDFGLSTCF  174 (486)
T ss_dssp             EECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEESSSSTTCCEEECSCSCTTTB
T ss_pred             EEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCC--eEeccCchHHEEEecCCCCCCEEEEECCcCeEC
Confidence            99999999999988643  46899999999999999999999999  99999999999995   4568999999998755


Q ss_pred             hh--------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 006019          528 AM--------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  599 (664)
Q Consensus       528 ~~--------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  599 (664)
                      ..        ....+.+||.... .++.++||||+||++|||+||+.||..  ....+.......+.....   .+.   
T Consensus       175 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~--~~~~~~~~~i~~~~~~~~---~~~---  245 (486)
T 3mwu_A          175 QQNTKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYG--KNEYDILKRVETGKYAFD---LPQ---  245 (486)
T ss_dssp             CCC----CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHTCCCSC---SGG---
T ss_pred             CCCCccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHHhCCCCCC---Ccc---
Confidence            32        2445678887765 588999999999999999999999943  333344444333211111   011   


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          600 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       600 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                       ....+..+.+++.+||+.||++|||+.++++.
T Consensus       246 -~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~h  277 (486)
T 3mwu_A          246 -WRTISDDAKDLIRKMLTFHPSLRITATQCLEH  277 (486)
T ss_dssp             -GGGSCHHHHHHHHHHTCSSTTTSCCHHHHHHC
T ss_pred             -cCCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence             12233568899999999999999999999874

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.9e-36  Score=316.94  Aligned_cols=252  Identities=15%  Similarity=0.221  Sum_probs=186.9

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. ++..||+|++.......    ....+.+|++++++++||||+++++++...+  ..++||
T Consensus         6 ~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~----~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~   79 (324)
T 3mtl_A            6 KLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEG----APCTAIREVSLLKDLKHANIVTLHDIIHTEK--SLTLVF   79 (324)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEECC----------CCCCCCCHHHHSCCCCTTBCCEEEEEECSS--CEEEEE
T ss_pred             EEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccc----cchhHHHHHHHHHhcCCCCCCeeeeEEeeCC--EEEEEe
Confidence            3478999999999999975 68899999986433221    1124567999999999999999999998876  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||++ |+|.+++.. ....+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....   
T Consensus        80 e~~~-~~l~~~~~~-~~~~~~~~~~~~~~~qi~~aL~~LH~~~--ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~  155 (324)
T 3mtl_A           80 EYLD-KDLKQYLDD-CGNIINMHNVKLFLFQLLRGLAYCHRQK--VLHRDLKPQNLLINERGELKLADFGLARAKSIPTK  155 (324)
T ss_dssp             ECCS-EEHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHTT--EEESSCCGGGEEECTTCCEEECSSSEEECC-----
T ss_pred             cccc-cCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHCC--ccCCCcCHHHEEECCCCCEEEccCcccccccCCcc
Confidence            9997 599888864 3456999999999999999999999999  99999999999999999999999999875431   


Q ss_pred             ------hhhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhc---CC--CCCccccC---
Q 006019          530 ------AEMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLS---GV--QPLQQFVD---  594 (664)
Q Consensus       530 ------~~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~---~~--~~~~~~~d---  594 (664)
                            ....+.+||.... ..++.++|||||||++|||+||+.||...  ...+.......   ..  ........   
T Consensus       156 ~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  233 (324)
T 3mtl_A          156 TYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGS--TVEEQLHFIFRILGTPTEETWPGILSNEE  233 (324)
T ss_dssp             -------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCTTTSTTGGGCHH
T ss_pred             ccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHhCCCChHhchhhhcchh
Confidence                  1334567886654 56899999999999999999999999532  22222222111   10  00000000   


Q ss_pred             ------CCCC-----CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH--HHHhhh
Q 006019          595 ------PTLS-----SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA--ILREIT  637 (664)
Q Consensus       595 ------~~~~-----~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~--~L~~i~  637 (664)
                            +...     ...+.....+.+++.+||+.||++|||++|+++  .+.++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~  289 (324)
T 3mtl_A          234 FKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKHPFFLSLG  289 (324)
T ss_dssp             HHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGGC
T ss_pred             hcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcChhhhhcc
Confidence                  0000     001123356889999999999999999999987  444443

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=1.9e-35  Score=306.37  Aligned_cols=242  Identities=20%  Similarity=0.273  Sum_probs=188.5

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|... ++..+|+|++........ ....+.+.+|++++++++||||+++++++...+....++||
T Consensus         9 i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~   87 (305)
T 2wtk_C            9 MGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRI-PNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMYMVM   87 (305)
T ss_dssp             CCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHS-TTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CEEEEE
T ss_pred             EeeEEecCCCeEEEEEEECCCCcEEEEEEecccccccc-chhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeEEEEe
Confidence            4578999999999999964 688999999865432111 12456799999999999999999999998644333679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++| |.+++.......+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++....   
T Consensus        88 e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~--i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~  164 (305)
T 2wtk_C           88 EYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQG--IVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAA  164 (305)
T ss_dssp             ECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECTTCCEEECCCTTCEECCTTCS
T ss_pred             hhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHCC--eeecCCCcccEEEcCCCcEEeeccccccccCcccc
Confidence            999876 777776555677999999999999999999999998  99999999999999999999999999876431   


Q ss_pred             --------hhhhcccccccCCCC--CCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 006019          530 --------AEMAATSKKLSSAPS--ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  599 (664)
Q Consensus       530 --------~~~~~~~pe~~~~~~--~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  599 (664)
                              ....+.+||......  .+.++||||||+++|||+||+.||..  ....+..........           .
T Consensus       165 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~--~~~~~~~~~i~~~~~-----------~  231 (305)
T 2wtk_C          165 DDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEG--DNIYKLFENIGKGSY-----------A  231 (305)
T ss_dssp             SCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCC--SSHHHHHHHHHHCCC-----------C
T ss_pred             ccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHhcCCC-----------C
Confidence                    223455677655433  37799999999999999999999943  333343333332211           1


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          600 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       600 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      .+..+...+.+++.+||+.||++||++.|+++.
T Consensus       232 ~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~  264 (305)
T 2wtk_C          232 IPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQH  264 (305)
T ss_dssp             CCSSSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred             CCCccCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            122233568899999999999999999999864

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=6.3e-36  Score=317.73  Aligned_cols=248  Identities=15%  Similarity=0.239  Sum_probs=190.3

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. ++..||+|++....    .....+.+.+|++++++++||||+++++++...+  ..++||
T Consensus        37 ~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~----~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~  110 (360)
T 3eqc_A           37 KISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI----KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDG--EISICM  110 (360)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEEEEEEECCC----CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             eeeeecCCCCeEEEEEEECCCCcEEEEEEecccc----CHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECC--EEEEEE
Confidence            3478999999999999975 68899999987542    2345678999999999999999999999998877  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcC-CCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh-
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~-~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~-  530 (664)
                      ||+++|+|.+++...  ..+++..+..|+.+++.||+|||+. +  |+||||||+|||++.++.+||+|||+++..... 
T Consensus       111 e~~~~~~L~~~l~~~--~~~~~~~~~~i~~~i~~~l~~lh~~~~--i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  186 (360)
T 3eqc_A          111 EHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM  186 (360)
T ss_dssp             CCCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHHHC--CCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHC
T ss_pred             ECCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHhCC--EEcCCccHHHEEECCCCCEEEEECCCCccccccc
Confidence            999999999998643  4689999999999999999999985 7  999999999999999999999999998765322 


Q ss_pred             ------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHh-cCC------------CCC--
Q 006019          531 ------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYL-SGV------------QPL--  589 (664)
Q Consensus       531 ------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~-~~~------------~~~--  589 (664)
                            ...+.+||......++.++|||||||++|||+||+.||............... ...            ...  
T Consensus       187 ~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (360)
T 3eqc_A          187 ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLNK  266 (360)
T ss_dssp             ----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC-----------------------
T ss_pred             ccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCCcccc
Confidence                  23456788877788899999999999999999999999532211111100000 000            000  


Q ss_pred             ---------------ccccCCCCCC-CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          590 ---------------QQFVDPTLSS-FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       590 ---------------~~~~d~~~~~-~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                                     ..+....... .......++.+++.+||+.||++|||++|+++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  324 (360)
T 3eqc_A          267 FGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMV  324 (360)
T ss_dssp             -------CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             cccCCCCcccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhh
Confidence                           0000000000 01123456889999999999999999999986

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=7e-36  Score=327.66  Aligned_cols=247  Identities=17%  Similarity=0.209  Sum_probs=184.5

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC----cee
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----FTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~----~~~  448 (664)
                      +.+.||+|+||.||+|+.. +++.||||++......   ....+.+.+|+++++.++|||||++++++...+.    ...
T Consensus        66 ~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~---~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~  142 (464)
T 3ttj_A           66 NLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQN---QTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDV  142 (464)
T ss_dssp             EEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGS---HHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEE
T ss_pred             EEEEeecCCCeEEEEEEECCCCCEEEEEEECccccC---hHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCCeE
Confidence            3478999999999999864 6899999998754221   3445778999999999999999999999965431    256


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++|||||++ +|.+.+.    ..+++..+..++.|++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...
T Consensus       143 ~lv~E~~~~-~l~~~~~----~~l~~~~~~~~~~qil~aL~~lH~~~--iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~  215 (464)
T 3ttj_A          143 YLVMELMDA-NLCQVIQ----MELDHERMSYLLYQMLCGIKHLHSAG--IIHRDLKPSNIVVKSDCTLKILDFGLARTAG  215 (464)
T ss_dssp             EEEEECCSE-EHHHHHT----SCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECTTSCEEECCCCCC----
T ss_pred             EEEEeCCCC-CHHHHHh----hcCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCChHhEEEeCCCCEEEEEEEeeeecC
Confidence            999999976 5666664    24899999999999999999999998  9999999999999999999999999998764


Q ss_pred             hh--------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCC-------------
Q 006019          529 MA--------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-------------  587 (664)
Q Consensus       529 ~~--------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~-------------  587 (664)
                      ..        ...+.+||......++.++|||||||++|||++|+.||...  +..+....++....             
T Consensus       216 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~--~~~~~~~~i~~~lg~p~~~~~~~~~~~  293 (464)
T 3ttj_A          216 TSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGR--DYIDQWNKVIEQLGTPCPEFMKKLQPT  293 (464)
T ss_dssp             -CCCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHHHCSCCHHHHTTSCHH
T ss_pred             CCcccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHhcCCCCHHHHHHcchh
Confidence            32        23456788888888999999999999999999999999532  22221111111000             


Q ss_pred             ---------CCc-----cccCCCCC----CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          588 ---------PLQ-----QFVDPTLS----SFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       588 ---------~~~-----~~~d~~~~----~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                               ...     ......+.    ........++.+|+.+||+.||++|||++|+++.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H  356 (464)
T 3ttj_A          294 VRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH  356 (464)
T ss_dssp             HHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             hhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence                     000     00000000    0011225678999999999999999999998863

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=4.3e-36  Score=315.23  Aligned_cols=247  Identities=20%  Similarity=0.277  Sum_probs=186.7

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. ++..||||++.....   .....+.+.+|++++++++||||+++++++.+.+  ..++||
T Consensus        29 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~  103 (331)
T 4aaa_A           29 NLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDD---DKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKK--RWYLVF  103 (331)
T ss_dssp             EEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSS---CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             eeeEEeecCCEEEEEEEECCCCceEEEEEEecCCC---chHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCC--EEEEEE
Confidence            3478999999999999975 488999999864332   2345567899999999999999999999998877  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++++|.+++.  ....+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.....  
T Consensus       104 e~~~~~~l~~~~~--~~~~~~~~~~~~~~~qi~~~l~~LH~~~--ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  179 (331)
T 4aaa_A          104 EFVDHTILDDLEL--FPNGLDYQVVQKYLFQIINGIGFCHSHN--IIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGE  179 (331)
T ss_dssp             ECCSEEHHHHHHH--STTCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECTTSCEEECCCTTC--------
T ss_pred             ecCCcchHHHHHh--hccCCCHHHHHHHHHHHHHHHHHHHHCC--EEccCcChheEEEcCCCcEEEEeCCCceeecCCcc
Confidence            9999999988764  3346999999999999999999999998  999999999999999999999999998765321  


Q ss_pred             -------hhhcccccccCCC-CCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhc--------------CCCC
Q 006019          531 -------EMAATSKKLSSAP-SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLS--------------GVQP  588 (664)
Q Consensus       531 -------~~~~~~pe~~~~~-~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~--------------~~~~  588 (664)
                             ...+.+||..... .++.++|||||||++|||+||+.||....  ..+.......              ....
T Consensus       180 ~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (331)
T 4aaa_A          180 VYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDS--DIDQLYHIMMCLGNLIPRHQELFNKNPV  257 (331)
T ss_dssp             ----CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHCSCCHHHHHHHHHCGG
T ss_pred             ccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCC--cHHHHHHHHHHhCCCChhhhhHhhhccc
Confidence                   2234567766543 67899999999999999999999995322  1111111110              0000


Q ss_pred             CccccCCCCCC------CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          589 LQQFVDPTLSS------FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       589 ~~~~~d~~~~~------~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ......+....      ..+..+..+.+++.+||+.||++||++.|+++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~  306 (331)
T 4aaa_A          258 FAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLH  306 (331)
T ss_dssp             GTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred             cccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhc
Confidence            11111111110      01123467899999999999999999998876

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=1.6e-36  Score=313.81  Aligned_cols=245  Identities=19%  Similarity=0.282  Sum_probs=172.1

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+. .++..||||.+......    ...+++.+|++++++++||||+++++++...+  ..++||
T Consensus        19 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   92 (303)
T 2vwi_A           19 LQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQ----TSMDELLKEIQAMSQCHHPNIVSYYTSFVVKD--ELWLVM   92 (303)
T ss_dssp             EEEECC---CCCEEEEEC----CEEEEECCC--------------------CCCCCCCTTBCCEEEEEESSS--CEEEEE
T ss_pred             hhheeccccceEEEEEEECCCCcEEEEEEEEhhhcc----hhHHHHHHHHHHHhhcCCCCEeeEEEEEeecC--CcEEEe
Confidence            458899999999999985 46889999988643321    23467899999999999999999999998877  679999


Q ss_pred             EecCCCChhhhhcc------cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhh
Q 006019          453 EYAPNGTLFEHIHI------KESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  526 (664)
Q Consensus       453 Ey~~~GsL~~~l~~------~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~  526 (664)
                      ||+++|+|.+++..      .....+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++.
T Consensus        93 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--i~H~dl~p~Nil~~~~~~~kl~dfg~~~~  170 (303)
T 2vwi_A           93 KLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNG--QIHRDVKAGNILLGEDGSVQIADFGVSAF  170 (303)
T ss_dssp             ECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCSGGGEEECTTCCEEECCCHHHHH
T ss_pred             hhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCC--CCCCCCChhhEEEcCCCCEEEEeccchhe
Confidence            99999999998853      13456999999999999999999999998  99999999999999999999999999876


Q ss_pred             hhhh--------------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCC-CCc
Q 006019          527 IAMA--------------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-PLQ  590 (664)
Q Consensus       527 ~~~~--------------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~-~~~  590 (664)
                      ....              ...+.+||.... ..++.++||||||+++|||+||+.||.....  .+.......... ...
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~--~~~~~~~~~~~~~~~~  248 (303)
T 2vwi_A          171 LATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPP--MKVLMLTLQNDPPSLE  248 (303)
T ss_dssp             CC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCG--GGHHHHHHTSSCCCTT
T ss_pred             eccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCch--hhHHHHHhccCCCccc
Confidence            5321              122445665433 4578899999999999999999999953221  111112222111 111


Q ss_pred             -cccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          591 -QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       591 -~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                       ...++.   ........+.+++.+||+.||++||++.++++
T Consensus       249 ~~~~~~~---~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  287 (303)
T 2vwi_A          249 TGVQDKE---MLKKYGKSFRKMISLCLQKDPEKRPTAAELLR  287 (303)
T ss_dssp             C-----C---CCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             cccccch---hhhhhhHHHHHHHHHHccCChhhCcCHHHHhh
Confidence             011111   11223356889999999999999999999886

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=2.1e-35  Score=327.14  Aligned_cols=241  Identities=18%  Similarity=0.251  Sum_probs=186.5

Q ss_pred             hhhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEE
Q 006019          372 EDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  450 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~l  450 (664)
                      +.+.+.||+|+||.||+|+.. ++..+|+|++.......   .....+.+|++++++++|||||++++++.+.+  ..++
T Consensus        39 y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~---~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~--~~~l  113 (494)
T 3lij_A           39 YQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVST---SSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKR--NYYL  113 (494)
T ss_dssp             EEEEEEEECC---EEEEEEETTTCCEEEEEEEEC--------CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSS--EEEE
T ss_pred             eEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCc---hHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCC--EEEE
Confidence            345588999999999999975 68899999987543222   22467899999999999999999999998876  6799


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCC---CceEecccCchhhh
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED---YAAKLSDLSFWNEI  527 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~---~~~kl~DfGla~~~  527 (664)
                      ||||+++|+|.+++...  ..+++..+..|+.+++.||+|||+.+  |+||||||+|||++.+   +.+||+|||+++..
T Consensus       114 v~e~~~~g~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~--ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~  189 (494)
T 3lij_A          114 VMECYKGGELFDEIIHR--MKFNEVDAAVIIKQVLSGVTYLHKHN--IVHRDLKPENLLLESKEKDALIKIVDFGLSAVF  189 (494)
T ss_dssp             EEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEESCSSTTCCEEECCCTTCEEC
T ss_pred             EEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCC--ceeccCChhhEEEeCCCCCCcEEEEECCCCeEC
Confidence            99999999999988633  46899999999999999999999998  9999999999999764   55999999998765


Q ss_pred             hh--------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 006019          528 AM--------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  599 (664)
Q Consensus       528 ~~--------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  599 (664)
                      ..        ....+.+||... ..++.++|||||||++|||+||+.||.  .....+.......+.....   .+....
T Consensus       190 ~~~~~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~--~~~~~~~~~~i~~~~~~~~---~~~~~~  263 (494)
T 3lij_A          190 ENQKKMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFG--GQTDQEILRKVEKGKYTFD---SPEWKN  263 (494)
T ss_dssp             BTTBCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSC--CSSHHHHHHHHHHTCCCCC---SGGGTT
T ss_pred             CCCccccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCC--CCCHHHHHHHHHhCCCCCC---chhccc
Confidence            32        223456777665 458899999999999999999999994  3334444444433321111   111111


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          600 FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       600 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                          .+..+.+++.+||+.||++|||+.++++
T Consensus       264 ----~s~~~~~li~~~L~~dp~~R~s~~e~l~  291 (494)
T 3lij_A          264 ----VSEGAKDLIKQMLQFDSQRRISAQQALE  291 (494)
T ss_dssp             ----SCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             ----CCHHHHHHHHHHCCCChhhCccHHHHhc
Confidence                2356889999999999999999999885

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=6.9e-36  Score=314.89  Aligned_cols=237  Identities=17%  Similarity=0.283  Sum_probs=184.3

Q ss_pred             hhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMM  450 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~l  450 (664)
                      .+.+.||+|+||.||+|+.. +++.+|+|++.....         .+.+|++++.++ +||||+++++++.+.+  ..++
T Consensus        25 ~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~---------~~~~E~~~l~~~~~hp~iv~~~~~~~~~~--~~~l   93 (342)
T 2qr7_A           25 EVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR---------DPTEEIEILLRYGQHPNIITLKDVYDDGK--YVYV   93 (342)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC---------CCHHHHHHHHHHTTSTTBCCEEEEEECSS--EEEE
T ss_pred             EEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC---------ChHHHHHHHHHhcCCCCcCeEEEEEEcCC--EEEE
Confidence            34588999999999999975 588999999864321         245688888888 7999999999998876  7799


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCC----CceEecccCchhh
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED----YAAKLSDLSFWNE  526 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~----~~~kl~DfGla~~  526 (664)
                      ||||+++|+|.+++..  ...+++.....++.+++.||+|||+.+  |+||||||+|||+.++    +.+||+|||+++.
T Consensus        94 v~E~~~gg~L~~~i~~--~~~~~~~~~~~~~~qi~~al~~lH~~g--ivHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~  169 (342)
T 2qr7_A           94 VTELMKGGELLDKILR--QKFFSEREASAVLFTITKTVEYLHAQG--VVHRDLKPSNILYVDESGNPESIRICDFGFAKQ  169 (342)
T ss_dssp             EECCCCSCBHHHHHHT--CTTCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEESSSSCSGGGEEECCCTTCEE
T ss_pred             EEeCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC--cEeccCCHHHEEEecCCCCcCeEEEEECCCccc
Confidence            9999999999999863  456999999999999999999999998  9999999999998543    3599999999886


Q ss_pred             hhhh---------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCC-CChHHHHHHHhcCCCCCccccCCC
Q 006019          527 IAMA---------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDN-GSLEDWAADYLSGVQPLQQFVDPT  596 (664)
Q Consensus       527 ~~~~---------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~  596 (664)
                      ....         ...+.+||......++.++|||||||++|||+||+.||.... ....+.......+.....   .  
T Consensus       170 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~---~--  244 (342)
T 2qr7_A          170 LRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFSLS---G--  244 (342)
T ss_dssp             CBCTTCCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHHHHCCCCCC---S--
T ss_pred             CcCCCCceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHHccCCcccC---c--
Confidence            5322         123345665544456789999999999999999999996432 334444444433321111   1  


Q ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          597 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       597 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                        ........++.+++.+||+.||++||++.++++
T Consensus       245 --~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~  277 (342)
T 2qr7_A          245 --GYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLR  277 (342)
T ss_dssp             --TTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             --cccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence              111223356889999999999999999999876

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=1.5e-35  Score=328.63  Aligned_cols=234  Identities=20%  Similarity=0.253  Sum_probs=190.0

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      +.||+|+||.||+|+.. +|+.||+|++.......  ....+.+.+|++++++++||||+++++++...+  ..++||||
T Consensus       191 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~--~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~--~l~lVmE~  266 (543)
T 3c4z_A          191 RVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKK--RKGYQGAMVEKKILAKVHSRFIVSLAYAFETKT--DLCLVMTI  266 (543)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHH--TTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EEEEEECC
T ss_pred             EEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhh--hHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCC--EEEEEEEe
Confidence            67999999999999975 68999999997543211  122467899999999999999999999998876  77999999


Q ss_pred             cCCCChhhhhcccC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          455 APNGTLFEHIHIKE--SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       455 ~~~GsL~~~l~~~~--~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      +++|+|.+++....  ...+++..+..++.+|+.||+|||+.+  |+||||||+|||++.++.+||+|||+++....   
T Consensus       267 ~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~g--IvHrDLKP~NILl~~~g~vkL~DFGla~~~~~~~~  344 (543)
T 3c4z_A          267 MNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRN--IIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQT  344 (543)
T ss_dssp             CTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECTTSCEEECCCTTCEECCTTCC
T ss_pred             ccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcC--CcccCCChHHEEEeCCCCEEEeecceeeeccCCCc
Confidence            99999999986432  456999999999999999999999998  99999999999999999999999999976532   


Q ss_pred             ------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCC--ChHHHHHHHhcCCCCCccccCCCCCCCC
Q 006019          530 ------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG--SLEDWAADYLSGVQPLQQFVDPTLSSFD  601 (664)
Q Consensus       530 ------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~  601 (664)
                            .+..+.+||......++.++|||||||++|||+||+.||.....  ...+..........           .++
T Consensus       345 ~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~~~~~i~~~~~-----------~~p  413 (543)
T 3c4z_A          345 KTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQAV-----------TYP  413 (543)
T ss_dssp             CBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHHHHHHHHHCCC-----------CCC
T ss_pred             ccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchhHHHHHHHHhhccc-----------CCC
Confidence                  22345678887777889999999999999999999999964322  33444444333211           112


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCH
Q 006019          602 EEQLETLGELIKSCVRADPEKRPTM  626 (664)
Q Consensus       602 ~~~~~~l~~l~~~Cl~~~P~~RPs~  626 (664)
                      ...+..+.+++.+||+.||++||++
T Consensus       414 ~~~s~~~~~li~~lL~~dP~~R~~~  438 (543)
T 3c4z_A          414 DKFSPASKDFCEALLQKDPEKRLGF  438 (543)
T ss_dssp             TTSCHHHHHHHHHHSCSSGGGSCCC
T ss_pred             cccCHHHHHHHHHhccCCHhHCCCC
Confidence            2334578899999999999999976

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=9.2e-36  Score=306.20  Aligned_cols=240  Identities=15%  Similarity=0.217  Sum_probs=177.2

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+. .+++.||+|++.....   .....+.+.++...++.++||||+++++++.+.+  ..++||
T Consensus        11 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~--~~~lv~   85 (290)
T 3fme_A           11 PIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVN---SQEQKRLLMDLDISMRTVDCPFTVTFYGALFREG--DVWICM   85 (290)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEEC---C---HHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--SEEEEE
T ss_pred             hHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccC---cHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccC--CEEEEE
Confidence            447899999999999996 4789999999864322   1223344555666688899999999999998876  679999


Q ss_pred             EecCCCChhhhhcc--cCCCCCCHHHHHHHHHHHHHHHHHhhcC-CCCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          453 EYAPNGTLFEHIHI--KESEHLDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~--~~~~~l~~~~~~~ia~~ia~gL~yLH~~-~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                      ||++ |+|.+++..  .....+++..+..|+.+++.||+|||+. +  |+||||||+||+++.++.+||+|||+++....
T Consensus        86 e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~--i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  162 (290)
T 3fme_A           86 ELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLS--VIHRDVKPSNVLINALGQVKMCDFGISGYLVD  162 (290)
T ss_dssp             ECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSC--CCCCCCSGGGCEECTTCCEEBCCC--------
T ss_pred             ehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCC--eecCCCCHHHEEECCCCCEEEeecCCcccccc
Confidence            9997 588877753  2456799999999999999999999986 8  99999999999999999999999999876532


Q ss_pred             h--------hhhccccccc----CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCC
Q 006019          530 A--------EMAATSKKLS----SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL  597 (664)
Q Consensus       530 ~--------~~~~~~pe~~----~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  597 (664)
                      .        ...+.+||..    ....++.++||||||+++|||+||+.||.......... .........  ...    
T Consensus       163 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~-~~~~~~~~~--~~~----  235 (290)
T 3fme_A          163 DVAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQL-KQVVEEPSP--QLP----  235 (290)
T ss_dssp             -------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHH-HHHHHSCCC--CCC----
T ss_pred             cccccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHH-HHHhccCCC--Ccc----
Confidence            2        2234567763    45568899999999999999999999995333322222 222222110  000    


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          598 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       598 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                         ....+.++.+++.+||+.||++|||+.|+++
T Consensus       236 ---~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~  266 (290)
T 3fme_A          236 ---ADKFSAEFVDFTSQCLKKNSKERPTYPELMQ  266 (290)
T ss_dssp             ---TTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             ---cccCCHHHHHHHHHHhhcChhhCcCHHHHHh
Confidence               1122356889999999999999999999987

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=1.3e-35  Score=315.49  Aligned_cols=260  Identities=16%  Similarity=0.186  Sum_probs=189.7

Q ss_pred             HHHHHHhhhh--cccccCCCeEEEEEEECCCcEEEEEEeeecccCCC------chhHHHHHHHHHHHHhccCCCcccceE
Q 006019          366 ELEAACEDFS--NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDW------PKNLEVQFRKKIDTLSKVNHKNFVNLI  437 (664)
Q Consensus       366 el~~~~~~~~--~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~------~~~~~~~f~~E~~~l~~l~H~niv~l~  437 (664)
                      ++......+.  +.||+|+||.||+|...+|..||||++........      .....+.+.+|++++++++||||++++
T Consensus        16 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   95 (362)
T 3pg1_A           16 ELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILGLR   95 (362)
T ss_dssp             HHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCCCS
T ss_pred             HHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcccee
Confidence            3444444443  89999999999999988899999999865443221      122347899999999999999999999


Q ss_pred             EEEecCC---CceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC
Q 006019          438 GFCEEEE---PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY  514 (664)
Q Consensus       438 g~~~~~~---~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~  514 (664)
                      +++...+   ....++||||++ |+|.+++.. ....+++..+..++.+++.||+|||+.+  |+||||||+|||++.++
T Consensus        96 ~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~Dlkp~NIl~~~~~  171 (362)
T 3pg1_A           96 DIFVHFEEPAMHKLYLVTELMR-TDLAQVIHD-QRIVISPQHIQYFMYHILLGLHVLHEAG--VVHRDLHPGNILLADNN  171 (362)
T ss_dssp             EEEEECCTTTCCEEEEEEECCS-EEHHHHHHC-TTSCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECTTC
T ss_pred             eeEEeccCCCcceEEEEEccCC-CCHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHHCc--CEecCCChHHEEEcCCC
Confidence            9986432   225699999998 688888863 3457999999999999999999999998  99999999999999999


Q ss_pred             ceEecccCchhhhhhh--------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcC
Q 006019          515 AAKLSDLSFWNEIAMA--------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG  585 (664)
Q Consensus       515 ~~kl~DfGla~~~~~~--------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~  585 (664)
                      .+||+|||+++.....        ...+.+||.... ..++.++|||||||++|||+||+.||...  ...+........
T Consensus       172 ~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~--~~~~~~~~i~~~  249 (362)
T 3pg1_A          172 DITICDFNLAREDTADANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGS--TFYNQLNKIVEV  249 (362)
T ss_dssp             CEEECCTTC---------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHH
T ss_pred             CEEEEecCcccccccccccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHH
Confidence            9999999999754321        233567886654 66899999999999999999999999432  222222211110


Q ss_pred             CC--C-----------CccccCCCCC--------CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          586 VQ--P-----------LQQFVDPTLS--------SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       586 ~~--~-----------~~~~~d~~~~--------~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ..  .           ..........        .........+.+++.+||+.||++|||+.|+++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  316 (362)
T 3pg1_A          250 VGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALR  316 (362)
T ss_dssp             HCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             cCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHc
Confidence            00  0           0000000000        011223456889999999999999999999986

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=100.00  E-value=1.2e-35  Score=326.10  Aligned_cols=246  Identities=14%  Similarity=0.185  Sum_probs=188.8

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCc-ccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN-FVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~n-iv~l~g~~~~~~~~~~~lV  451 (664)
                      +.+.||+|+||.||+|+. .++..||||++......       .++..|+++++.++|++ +..+..++...+  ..++|
T Consensus        11 i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~-------~~~~~E~~il~~L~~~~~i~~i~~~~~~~~--~~~lv   81 (483)
T 3sv0_A           11 LGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKH-------PQLLYESKIYRILQGGTGIPNVRWFGVEGD--YNVLV   81 (483)
T ss_dssp             CCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSS-------CCHHHHHHHHHHTTTSTTCCCEEEEEEETT--EEEEE
T ss_pred             EEEEEeeCCCEEEEEEEECCCCcEEEEEEecccccc-------HHHHHHHHHHHHhcCCCCCCeEEEEEeeCC--EEEEE
Confidence            447899999999999996 56899999987654332       24789999999998754 555555555555  67999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEe---cCCCceEecccCchhhhh
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL---TEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILl---d~~~~~kl~DfGla~~~~  528 (664)
                      |||+ +|+|.+++.. ....+++..++.|+.+|+.||+|||+++  |+||||||+|||+   +.++.+||+|||+++...
T Consensus        82 me~~-g~sL~~ll~~-~~~~l~~~~~~~i~~qi~~aL~yLH~~g--IvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~  157 (483)
T 3sv0_A           82 MDLL-GPSLEDLFNF-CSRKLSLKTVLMLADQMINRVEFVHSKS--FLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYR  157 (483)
T ss_dssp             EECC-CCBHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECCGGGTTCEEECCCTTCEECB
T ss_pred             EECC-CCCHHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHHHCC--EeecccCcceEEEecCCCCCeEEEEeCCcceecc
Confidence            9999 9999999863 3456999999999999999999999998  9999999999999   688999999999997653


Q ss_pred             hh----------------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCC-ChHHHHHHHhcCCCCCcc
Q 006019          529 MA----------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG-SLEDWAADYLSGVQPLQQ  591 (664)
Q Consensus       529 ~~----------------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~-~~~~~~~~~~~~~~~~~~  591 (664)
                      ..                ...+.+||......++.++|||||||++|||+||+.||..... ...+.........  ...
T Consensus       158 ~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~--~~~  235 (483)
T 3sv0_A          158 DTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKK--VAT  235 (483)
T ss_dssp             CTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHH--HHS
T ss_pred             CCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhcc--ccc
Confidence            22                2234567777777889999999999999999999999964332 2222222211110  000


Q ss_pred             ccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          592 FVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       592 ~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      ...    .....++.++.+++.+||+.+|++||++.+|++.|+++..
T Consensus       236 ~~~----~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~  278 (483)
T 3sv0_A          236 SIE----ALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFI  278 (483)
T ss_dssp             CHH----HHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHH
T ss_pred             cHH----HHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHH
Confidence            000    0001123578999999999999999999999999999864

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.9e-35  Score=309.41  Aligned_cols=239  Identities=19%  Similarity=0.288  Sum_probs=185.8

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCC----Cce
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEE----PFT  447 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~----~~~  447 (664)
                      +.+.||+|+||.||+|+. .+++.||||++.....      ..+.+.+|+++++++ +||||+++++++....    ...
T Consensus        28 ~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~------~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~  101 (326)
T 2x7f_A           28 LVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD------EEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQ  101 (326)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS------TTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CCCCE
T ss_pred             EEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc------cHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCccccce
Confidence            348899999999999997 4688999999865432      236789999999999 8999999999997632    226


Q ss_pred             eEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhh
Q 006019          448 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~  527 (664)
                      .++||||+++|+|.+++.......+++..+..++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||++...
T Consensus       102 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~  179 (326)
T 2x7f_A          102 LWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHK--VIHRDIKGQNVLLTENAEVKLVDFGVSAQL  179 (326)
T ss_dssp             EEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCSGGGEEECTTCCEEECCCTTTC--
T ss_pred             EEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCcHHHEEEcCCCCEEEeeCcCceec
Confidence            799999999999999997555567999999999999999999999998  999999999999999999999999998765


Q ss_pred             hh---------hhhhcccccccC-----CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCcccc
Q 006019          528 AM---------AEMAATSKKLSS-----APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFV  593 (664)
Q Consensus       528 ~~---------~~~~~~~pe~~~-----~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (664)
                      ..         ....+.+||...     ...++.++|||||||++|||+||+.||...  ...+.........  .....
T Consensus       180 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~--~~~~~~~~~~~~~--~~~~~  255 (326)
T 2x7f_A          180 DRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDM--HPMRALFLIPRNP--APRLK  255 (326)
T ss_dssp             -----------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTS--CHHHHHHHHHHSC--CCCCS
T ss_pred             CcCccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCC--cHHHHHHHhhcCc--cccCC
Confidence            32         123456777654     456789999999999999999999999432  2222222222211  11111


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          594 DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       594 d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                             ....+..+.+++.+||+.||++||++.++++
T Consensus       256 -------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  286 (326)
T 2x7f_A          256 -------SKKWSKKFQSFIESCLVKNHSQRPATEQLMK  286 (326)
T ss_dssp             -------CSCSCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             -------ccccCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence                   1122356889999999999999999999987

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.3e-35  Score=316.16  Aligned_cols=253  Identities=15%  Similarity=0.197  Sum_probs=185.3

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC----cee
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----FTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~----~~~  448 (664)
                      +.+.||+|+||.||+|.. .+|+.||||++.....   .....+.+.+|++++++++||||+++++++...+.    ...
T Consensus        29 ~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~---~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~  105 (367)
T 1cm8_A           29 DLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQ---SELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDF  105 (367)
T ss_dssp             EEEEC------CEEEEEETTTCCEEEEEECSSTTS---SHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCC
T ss_pred             EeEEeeecCCeEEEEEEECCCCCEEEEEEeCcccc---CHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCceE
Confidence            347899999999999997 4689999999854322   23445779999999999999999999999976531    135


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++||||+ +++|.+++..   ..+++.....++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...
T Consensus       106 ~lv~e~~-~~~L~~~~~~---~~l~~~~~~~~~~qi~~~L~~LH~~~--ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  179 (367)
T 1cm8_A          106 YLVMPFM-GTDLGKLMKH---EKLGEDRIQFLVYQMLKGLRYIHAAG--IIHRDLKPGNLAVNEDCELKILDFGLARQAD  179 (367)
T ss_dssp             EEEEECC-SEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             EEEEecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCcCHHHEEEcCCCCEEEEeeecccccc
Confidence            8999999 7899998863   45899999999999999999999999  9999999999999999999999999988653


Q ss_pred             h------hhhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCC-------------
Q 006019          529 M------AEMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP-------------  588 (664)
Q Consensus       529 ~------~~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~-------------  588 (664)
                      .      ....+.+||.... ..++.++||||+||++|||+||+.||...  +..+....+......             
T Consensus       180 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~--~~~~~l~~i~~~~g~~~~~~~~~~~~~~  257 (367)
T 1cm8_A          180 SEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGS--DHLDQLKEIMKVTGTPPAEFVQRLQSDE  257 (367)
T ss_dssp             SSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHHHCCCCHHHHHTCSCHH
T ss_pred             cccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHhcCCCCHHHHHHhhhHH
Confidence            2      2334567776554 67899999999999999999999999532  222222211110000             


Q ss_pred             -------CccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH--HHHhhh
Q 006019          589 -------LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA--ILREIT  637 (664)
Q Consensus       589 -------~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~--~L~~i~  637 (664)
                             +.......+..........+.+++.+||+.||++|||+.|+++  .++++.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~hp~f~~~~  315 (367)
T 1cm8_A          258 AKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLH  315 (367)
T ss_dssp             HHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC
T ss_pred             HHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhcChHHHhhc
Confidence                   0000011111112233456889999999999999999999987  344443

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.3e-35  Score=307.02  Aligned_cols=236  Identities=19%  Similarity=0.267  Sum_probs=186.0

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. +|..||+|.+....       ..+++.+|++++++++||||+++++++...+  ..++||
T Consensus        33 ~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-------~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~  103 (314)
T 3com_A           33 VLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES-------DLQEIIKEISIMQQCDSPHVVKYYGSYFKNT--DLWIVM  103 (314)
T ss_dssp             EEEECC----CEEEEEEETTTCCEEEEEEEETTS-------CCHHHHHHHHHHHTCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             hheeeccCCCeEEEEEEECCCCCEEEEEecCchH-------HHHHHHHHHHHHHhCCCCCCccEEEEEEeCC--EEEEEe
Confidence            4488999999999999975 58999999986432       1257899999999999999999999998876  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++|+|.+++.. ....+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++....   
T Consensus       104 e~~~~~~L~~~~~~-~~~~~~~~~~~~i~~~i~~~l~~lH~~~--i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~  180 (314)
T 3com_A          104 EYCGAGSVSDIIRL-RNKTLTEDEIATILQSTLKGLEYLHFMR--KIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMA  180 (314)
T ss_dssp             ECCTTEEHHHHHHH-HTCCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTCCEEECCCTTCEECBTTBS
T ss_pred             ecCCCCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHhCC--CcCCCcCHHHEEECCCCCEEEeecccchhhhhhcc
Confidence            99999999999863 2456899999999999999999999998  99999999999999999999999999865432   


Q ss_pred             ------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          530 ------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       530 ------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                            ....+.+||......++.++||||||+++|||+||+.||...  ...+..........       +.. ..+..
T Consensus       181 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~--~~~~~~~~~~~~~~-------~~~-~~~~~  250 (314)
T 3com_A          181 KRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADI--HPMRAIFMIPTNPP-------PTF-RKPEL  250 (314)
T ss_dssp             CBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTS--CHHHHHHHHHHSCC-------CCC-SSGGG
T ss_pred             ccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCC--ChHHHHHHHhcCCC-------ccc-CCccc
Confidence                  123456788777777899999999999999999999999432  22222221111110       000 11222


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .+..+.+++.+||+.||++||++.++++
T Consensus       251 ~~~~l~~li~~~l~~dp~~Rpt~~~ll~  278 (314)
T 3com_A          251 WSDNFTDFVKQCLVKSPEQRATATQLLQ  278 (314)
T ss_dssp             SCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             CCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence            3457899999999999999999999976

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=3.8e-35  Score=313.08  Aligned_cols=246  Identities=16%  Similarity=0.198  Sum_probs=184.6

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC----cee
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----FTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~----~~~  448 (664)
                      +.+.||+|+||.||+|... ++..||||++.....   .....+.+.+|+++++.++||||+++++++...+.    ...
T Consensus        29 ~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~  105 (371)
T 2xrw_A           29 NLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQ---NQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDV  105 (371)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTS---SHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCCEE
T ss_pred             EeeeeEecCCEEEEEEEECCCCceEEEEEeccccC---ChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccccce
Confidence            3478999999999999864 688999999875332   13445678999999999999999999999976431    156


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++||||++ |+|.+.+.    ..+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...
T Consensus       106 ~lv~e~~~-~~l~~~~~----~~~~~~~~~~i~~qi~~al~~lH~~~--ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~  178 (371)
T 2xrw_A          106 YIVMELMD-ANLCQVIQ----MELDHERMSYLLYQMLCGIKHLHSAG--IIHRDLKPSNIVVKSDCTLKILDFGLARTAG  178 (371)
T ss_dssp             EEEEECCS-EEHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEECTTSCEEECCCCC-----
T ss_pred             EEEEEcCC-CCHHHHHh----hccCHHHHHHHHHHHHHHHHHHHHCC--eecccCCHHHEEEcCCCCEEEEEeecccccc
Confidence            99999997 47888875    34899999999999999999999998  9999999999999999999999999998654


Q ss_pred             hh--------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCC-c---------
Q 006019          529 MA--------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL-Q---------  590 (664)
Q Consensus       529 ~~--------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~-~---------  590 (664)
                      ..        ...+.+||......++.++|||||||++|||+||+.||...  +..+............ .         
T Consensus       179 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~  256 (371)
T 2xrw_A          179 TSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGT--DHIDQWNKVIEQLGTPCPEFMKKLQPT  256 (371)
T ss_dssp             -----------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHC-CCCCCHHHHTTSCHH
T ss_pred             cccccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHhCCCCHHHHHHhhhH
Confidence            22        23456788877778899999999999999999999999432  2222222222111000 0         


Q ss_pred             ---------------------cccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          591 ---------------------QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       591 ---------------------~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                                           ...-+............+.+++.+||+.||++|||++|+++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~  318 (371)
T 2xrw_A          257 VRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQ  318 (371)
T ss_dssp             HHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             HHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhC
Confidence                                 00000000011223567899999999999999999999986

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=3e-35  Score=307.82  Aligned_cols=250  Identities=16%  Similarity=0.228  Sum_probs=187.3

Q ss_pred             hhcccccCCCeEEEEEEE--CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc---CCCcccceEEEEec---CCC
Q 006019          374 FSNVIGSSPIGTVYKGTL--SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV---NHKNFVNLIGFCEE---EEP  445 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~--~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l---~H~niv~l~g~~~~---~~~  445 (664)
                      +.+.||+|+||.||+|+.  .+++.||+|++........   ....+.+|+++++.+   +||||+++++++..   ...
T Consensus        15 ~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~---~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~   91 (326)
T 1blx_A           15 CVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEG---MPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRE   91 (326)
T ss_dssp             EEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTS---CBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSE
T ss_pred             eeeeecccccEEEEEEEecCCCCEEEEEEEeccCccccc---CCchhhHHHHHHHhhhccCCCCeEeeeeeeeecccCCC
Confidence            448899999999999997  4688999999876543221   123466777777666   89999999999872   122


Q ss_pred             ceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchh
Q 006019          446 FTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN  525 (664)
Q Consensus       446 ~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~  525 (664)
                      ...++||||++ |+|.+++.......+++..+..++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||+++
T Consensus        92 ~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~g--i~H~dlkp~Nili~~~~~~kl~Dfg~~~  168 (326)
T 1blx_A           92 TKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHR--VVHRDLKPQNILVTSSGQIKLADFGLAR  168 (326)
T ss_dssp             EEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECTTCCEEECSCCSCC
T ss_pred             ceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCC--ceeccCCHHHeEEcCCCCEEEecCcccc
Confidence            26799999998 69999987655566999999999999999999999998  9999999999999999999999999987


Q ss_pred             hhhhh--------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCC-----CCCcc-
Q 006019          526 EIAMA--------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV-----QPLQQ-  591 (664)
Q Consensus       526 ~~~~~--------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~-----~~~~~-  591 (664)
                      .....        ...+.+||......++.++|||||||++|||+||+.||...  ...+.........     ..... 
T Consensus       169 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~  246 (326)
T 1blx_A          169 IYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGS--SDVDQLGKILDVIGLPGEEDWPRD  246 (326)
T ss_dssp             CCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCGGGSCTT
T ss_pred             cccCCCCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCC--CHHHHHHHHHHHcCCCCcccCccc
Confidence            65422        22345778777777899999999999999999999999432  2222222222100     00000 


Q ss_pred             ------cc----CCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          592 ------FV----DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       592 ------~~----d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                            ..    ..............+.+++.+||+.||++||++.|+++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  296 (326)
T 1blx_A          247 VALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  296 (326)
T ss_dssp             CSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             cccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence                  00    00011122234467889999999999999999999984

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=1.6e-35  Score=313.47  Aligned_cols=250  Identities=18%  Similarity=0.206  Sum_probs=185.3

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCC------Cc
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE------PF  446 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~------~~  446 (664)
                      +.+.||+|+||.||+|+. .+|+.||+|++.......   .....+.+|++++++++||||+++++++....      ..
T Consensus        21 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   97 (351)
T 3mi9_A           21 KLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKE---GFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKG   97 (351)
T ss_dssp             EEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSS---SSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------C
T ss_pred             EEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccc---cchHHHHHHHHHHHhccCCCcccHhheeeccccccccCCc
Confidence            448899999999999997 468999999986544322   22356889999999999999999999997643      12


Q ss_pred             eeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhh
Q 006019          447 TRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  526 (664)
Q Consensus       447 ~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~  526 (664)
                      ..++||||+++ +|.+.+.. ....+++..+..|+.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++.
T Consensus        98 ~~~lv~e~~~~-~l~~~l~~-~~~~~~~~~~~~i~~qi~~~l~~LH~~~--ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~  173 (351)
T 3mi9_A           98 SIYLVFDFCEH-DLAGLLSN-VLVKFTLSEIKRVMQMLLNGLYYIHRNK--ILHRDMKAANVLITRDGVLKLADFGLARA  173 (351)
T ss_dssp             EEEEEEECCSE-EHHHHHHC-TTSCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             eEEEEEeccCC-CHHHHHhh-ccCCCCHHHHHHHHHHHHHHHHHHHHCC--eeCCCCCHHHEEEcCCCCEEEccchhccc
Confidence            57899999985 77777753 3356999999999999999999999998  99999999999999999999999999875


Q ss_pred             hhh-------------hhhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCC---
Q 006019          527 IAM-------------AEMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL---  589 (664)
Q Consensus       527 ~~~-------------~~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~---  589 (664)
                      ...             ....+.+||.... ..++.++|||||||++|||+||+.||....  ..+............   
T Consensus       174 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~--~~~~~~~i~~~~~~~~~~  251 (351)
T 3mi9_A          174 FSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNT--EQHQLALISQLCGSITPE  251 (351)
T ss_dssp             CCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHCCCCTT
T ss_pred             ccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHHHhCCCChh
Confidence            431             1334567886654 557899999999999999999999995322  222111111100000   


Q ss_pred             --cccc-----------CCCCCCCCHH-----HHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          590 --QQFV-----------DPTLSSFDEE-----QLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       590 --~~~~-----------d~~~~~~~~~-----~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                        ....           ..........     ....+.+++.+||+.||++|||+.|+++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  312 (351)
T 3mi9_A          252 VWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH  312 (351)
T ss_dssp             TSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             hccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhCC
Confidence              0000           0000000000     12457899999999999999999998873

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=3.2e-35  Score=308.19  Aligned_cols=243  Identities=14%  Similarity=0.188  Sum_probs=184.8

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.+.||+|+||.||+|+. .+++.||||++...        ..+.+.+|++++++++ ||||+++++++.+......++|
T Consensus        40 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--------~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv  111 (330)
T 3nsz_A           40 LVRKLGRGKYSEVFEAINITNNEKVVVKILKPV--------KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALV  111 (330)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEECSC--------CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEE
T ss_pred             EEEEecccCCeEEEEEEECCCCcEEEEEEeccc--------chHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEE
Confidence            448899999999999986 56899999998522        2367899999999997 9999999999987443367999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC-ceEecccCchhhhhh-
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY-AAKLSDLSFWNEIAM-  529 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~-~~kl~DfGla~~~~~-  529 (664)
                      |||+++++|.+++.     .+++..+..++.+++.||+|||+.+  |+||||||+|||++.++ .+||+|||+++.... 
T Consensus       112 ~e~~~~~~l~~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~  184 (330)
T 3nsz_A          112 FEHVNNTDFKQLYQ-----TLTDYDIRFYMYEILKALDYCHSMG--IMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPG  184 (330)
T ss_dssp             EECCCCCCHHHHGG-----GCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEETTTTEEEECCCTTCEECCTT
T ss_pred             EeccCchhHHHHHH-----hCCHHHHHHHHHHHHHHHHHHHhCC--eeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCC
Confidence            99999999999874     3889999999999999999999999  99999999999999776 899999999975532 


Q ss_pred             -------hhhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHH-----------HhcC-CCCC
Q 006019          530 -------AEMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAAD-----------YLSG-VQPL  589 (664)
Q Consensus       530 -------~~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~-----------~~~~-~~~~  589 (664)
                             ....+.+||.... ..++.++|||||||++|||+||+.||.............           .+.. ....
T Consensus       185 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  264 (330)
T 3nsz_A          185 QEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIEL  264 (330)
T ss_dssp             CCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCC
T ss_pred             CccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhcccc
Confidence                   1234556776655 668999999999999999999999995333221111110           0000 0000


Q ss_pred             ----ccccC--------CCC-CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          590 ----QQFVD--------PTL-SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       590 ----~~~~d--------~~~-~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                          .....        ... .........++.+++.+||+.||++|||++|+++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~  319 (330)
T 3nsz_A          265 DPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME  319 (330)
T ss_dssp             CTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             ccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence                00000        000 0111223467899999999999999999999986

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=9.5e-35  Score=298.55  Aligned_cols=242  Identities=20%  Similarity=0.263  Sum_probs=190.9

Q ss_pred             HhhhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeE
Q 006019          371 CEDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  449 (664)
Q Consensus       371 ~~~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~  449 (664)
                      .+.+.+.||+|+||.||+|+.. +++.||+|++.......   ...+.+.+|++++++++||||+++++++.+.+  ..+
T Consensus        23 ~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~   97 (287)
T 2wei_A           23 RYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKN---KDTSTILREVELLKKLDHPNIMKLFEILEDSS--SFY   97 (287)
T ss_dssp             HEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSS---SCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS--EEE
T ss_pred             cceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccch---HHHHHHHHHHHHHHhccCCCccEEEEEEeCCC--eEE
Confidence            3445589999999999999975 68899999987544322   23467999999999999999999999998876  679


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCC---CceEecccCchhh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED---YAAKLSDLSFWNE  526 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~---~~~kl~DfGla~~  526 (664)
                      +|+||+++++|.+++...  ..+++..+..++.+++.||+|||+.+  ++||||||+||+++.+   +.+||+|||+++.
T Consensus        98 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~~~--i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~  173 (287)
T 2wei_A           98 IVGELYTGGELFDEIIKR--KRFSEHDAARIIKQVFSGITYMHKHN--IVHRDLKPENILLESKEKDCDIKIIDFGLSTC  173 (287)
T ss_dssp             EEECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEESCSSTTCCEEECSTTGGGT
T ss_pred             EEEEccCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCChhhEEEecCCCcccEEEeccCccee
Confidence            999999999999988633  46899999999999999999999998  9999999999999754   4799999999875


Q ss_pred             hhh--------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 006019          527 IAM--------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       527 ~~~--------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                      ...        ....+.+||.... .++.++||||||+++|||+||+.||..  ....+.......+.....   .+...
T Consensus       174 ~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~--~~~~~~~~~~~~~~~~~~---~~~~~  247 (287)
T 2wei_A          174 FQQNTKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYG--KNEYDILKRVETGKYAFD---LPQWR  247 (287)
T ss_dssp             BCCCSSCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCCCC---SGGGT
T ss_pred             ecCCCccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCC--CCHHHHHHHHHcCCCCCC---chhhh
Confidence            532        2334567776654 478999999999999999999999943  233333333333211110   01111


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                          ..+.++.+++.+||+.||++||++.++++
T Consensus       248 ----~~~~~~~~li~~~l~~dp~~Rps~~ell~  276 (287)
T 2wei_A          248 ----TISDDAKDLIRKMLTFHPSLRITATQCLE  276 (287)
T ss_dssp             ----TSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ----hcCHHHHHHHHHHcccChhhCcCHHHHhc
Confidence                12356889999999999999999999987

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=6.8e-36  Score=316.89  Aligned_cols=241  Identities=20%  Similarity=0.306  Sum_probs=187.5

Q ss_pred             hhcccccCCCeEEEEEEE----CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCcee
Q 006019          374 FSNVIGSSPIGTVYKGTL----SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~----~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~  448 (664)
                      +.+.||+|+||.||+|+.    .+++.||||++....... .....+.+.+|+++++++ +||||+++++++...+  ..
T Consensus        58 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~--~~  134 (355)
T 1vzo_A           58 LLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQ-KAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET--KL  134 (355)
T ss_dssp             EEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEE-EESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT--EE
T ss_pred             EEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhh-hhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc--eE
Confidence            458899999999999997    368999999986533111 011234577899999999 6999999999998877  67


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++||||+++|+|.+++...  ..+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...
T Consensus       135 ~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~--ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~  210 (355)
T 1vzo_A          135 HLILDYINGGELFTHLSQR--ERFTEHEVQIYVGEIVLALEHLHKLG--IIYRDIKLENILLDSNGHVVLTDFGLSKEFV  210 (355)
T ss_dssp             EEEECCCCSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECTTSCEEESCSSEEEECC
T ss_pred             EEEeecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEECCCCcEEEeeCCCCeecc
Confidence            9999999999999998643  46899999999999999999999998  9999999999999999999999999987542


Q ss_pred             h----------hhhhcccccccCC--CCCCcCCcchhhHHHHHHHHhCCCCccCCC--CChHHHHHHHhcCCCCCccccC
Q 006019          529 M----------AEMAATSKKLSSA--PSASLESNVYNFGVLLFEMVTGRLPYLVDN--GSLEDWAADYLSGVQPLQQFVD  594 (664)
Q Consensus       529 ~----------~~~~~~~pe~~~~--~~~s~ksDVySfGvvl~El~tG~~P~~~~~--~~~~~~~~~~~~~~~~~~~~~d  594 (664)
                      .          ....+.+||....  ..++.++|||||||++|||+||+.||....  ....++.........       
T Consensus       211 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~-------  283 (355)
T 1vzo_A          211 ADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEP-------  283 (355)
T ss_dssp             GGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCC-------
T ss_pred             cCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHHHHHHhccCC-------
Confidence            1          1223456776654  346889999999999999999999996332  233333333332211       


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhccCCCCCCC-----CHHHHHHH
Q 006019          595 PTLSSFDEEQLETLGELIKSCVRADPEKRP-----TMRDIAAI  632 (664)
Q Consensus       595 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RP-----s~~ev~~~  632 (664)
                          .++......+.+++.+||+.||++||     ++.|+++.
T Consensus       284 ----~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h  322 (355)
T 1vzo_A          284 ----PYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEH  322 (355)
T ss_dssp             ----CCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTS
T ss_pred             ----CCCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcC
Confidence                12223345688999999999999999     89988764

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=4.2e-35  Score=306.41  Aligned_cols=243  Identities=20%  Similarity=0.263  Sum_probs=182.9

Q ss_pred             hhhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCC---CchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCce
Q 006019          372 EDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKD---WPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  447 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~---~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  447 (664)
                      +.+.+.||+|+||.||+|+.. +++.||||.+.......   ........+.+|++++++++||||+++++++...+   
T Consensus        12 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~---   88 (322)
T 2ycf_A           12 YIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED---   88 (322)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS---
T ss_pred             eeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc---
Confidence            345589999999999999975 57899999986533210   01122346889999999999999999999987643   


Q ss_pred             eEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCc---eEecccCch
Q 006019          448 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA---AKLSDLSFW  524 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~---~kl~DfGla  524 (664)
                      .++||||+++|+|.+++.  ....+++.....++.+++.||+|||+.+  |+||||||+|||++.++.   +||+|||++
T Consensus        89 ~~lv~e~~~~~~L~~~~~--~~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~  164 (322)
T 2ycf_A           89 YYIVLELMEGGELFDKVV--GNKRLKEATCKLYFYQMLLAVQYLHENG--IIHRDLKPENVLLSSQEEDCLIKITDFGHS  164 (322)
T ss_dssp             EEEEEECCTTEETHHHHS--TTCCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEESSSSSSCCEEECCCTTC
T ss_pred             eEEEEecCCCCcHHHHHh--ccCCCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCCHHHEEEecCCCCCeEEEccCccc
Confidence            589999999999999886  3457899999999999999999999998  999999999999987654   999999998


Q ss_pred             hhhhh--------hhhhccccccc---CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCC--ChHHHHHHHhcCCCCCcc
Q 006019          525 NEIAM--------AEMAATSKKLS---SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG--SLEDWAADYLSGVQPLQQ  591 (664)
Q Consensus       525 ~~~~~--------~~~~~~~pe~~---~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~--~~~~~~~~~~~~~~~~~~  591 (664)
                      +....        ....+.+||..   ....++.++|||||||++|||+||+.||.....  .+.+...   .+......
T Consensus       165 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~---~~~~~~~~  241 (322)
T 2ycf_A          165 KILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQIT---SGKYNFIP  241 (322)
T ss_dssp             EECCCCHHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSCHHHHHH---HTCCCCCH
T ss_pred             eecccccccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHH---hCccccCc
Confidence            76532        12345677764   345678999999999999999999999954322  2222211   11110000


Q ss_pred             ccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          592 FVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       592 ~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                             ......+..+.+++.+||+.||++||++.++++
T Consensus       242 -------~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~  274 (322)
T 2ycf_A          242 -------EVWAEVSEKALDLVKKLLVVDPKARFTTEEALR  274 (322)
T ss_dssp             -------HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             -------hhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence                   000112356889999999999999999999874

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=1.9e-35  Score=324.56  Aligned_cols=183  Identities=14%  Similarity=0.168  Sum_probs=144.2

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC---ceeE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP---FTRM  449 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~---~~~~  449 (664)
                      +.+.||+|+||.||+|+.. ++..||||++.....   .....+.+.+|+++|++++|||||++++++.....   ...+
T Consensus        57 ~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~  133 (458)
T 3rp9_A           57 IRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFE---DLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDELY  133 (458)
T ss_dssp             ECCC-------CEEEEEECC--CEEEEEEECSTTS---SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEE
T ss_pred             EeeEeeecCCeEEEEEEECCCCcEEEEEEechhhc---CHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceEE
Confidence            4578999999999999865 689999999854322   13445789999999999999999999999954321   2579


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                      +||||+. |+|.+++.  ....+++..+..|+.+|+.||+|||+.+  |+||||||+|||++.++.+||+|||+++....
T Consensus       134 lv~e~~~-~~L~~~~~--~~~~l~~~~~~~~~~qi~~aL~~LH~~~--iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  208 (458)
T 3rp9_A          134 VVLEIAD-SDFKKLFR--TPVYLTELHIKTLLYNLLVGVKYVHSAG--ILHRDLKPANCLVNQDCSVKVCDFGLARTVDY  208 (458)
T ss_dssp             EEECCCS-EEHHHHHH--SSCCCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCCGGGEEECTTCCEEECCCTTCBCTTS
T ss_pred             EEEeccc-cchhhhcc--cCCCCCHHHHHHHHHHHHHHHHHHHhCC--cCCCCCChhhEEECCCCCEeecccccchhccC
Confidence            9999984 79999886  3456999999999999999999999998  99999999999999999999999999986531


Q ss_pred             h------------------------------------hhhccccccc-CCCCCCcCCcchhhHHHHHHHHhC
Q 006019          530 A------------------------------------EMAATSKKLS-SAPSASLESNVYNFGVLLFEMVTG  564 (664)
Q Consensus       530 ~------------------------------------~~~~~~pe~~-~~~~~s~ksDVySfGvvl~El~tG  564 (664)
                      .                                    +..+.+||.. ....++.++|||||||++|||+||
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg  280 (458)
T 3rp9_A          209 PENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNM  280 (458)
T ss_dssp             CTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTT
T ss_pred             ccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHh
Confidence            1                                    2235678854 556689999999999999999994

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.5e-35  Score=320.12  Aligned_cols=247  Identities=15%  Similarity=0.219  Sum_probs=173.0

Q ss_pred             cccccCCCeEEEEEEEC---CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          376 NVIGSSPIGTVYKGTLS---NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~---~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      ++||+|+||.||+|+..   ++..||||++....       ....+.+|+++|++++|||||++++++........++||
T Consensus        27 ~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~-------~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~   99 (405)
T 3rgf_A           27 CKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG-------ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLF   99 (405)
T ss_dssp             CCCC-----EEEEEEESSSSCCCCEEEEECSSSS-------CCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEE
T ss_pred             cEeeecCCeEEEEEEEccCCCCeEEEEEEECCCC-------CCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEE
Confidence            57999999999999975   57889999985332       124688999999999999999999999654433789999


Q ss_pred             EecCCCChhhhhccc-------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEe----cCCCceEeccc
Q 006019          453 EYAPNGTLFEHIHIK-------ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL----TEDYAAKLSDL  521 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~-------~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILl----d~~~~~kl~Df  521 (664)
                      ||++ |+|.+++...       ....+++..+..|+.+++.||+|||+.+  |+||||||+|||+    +.++.+||+||
T Consensus       100 e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~--ivH~Dlkp~NIll~~~~~~~~~~kl~Df  176 (405)
T 3rgf_A          100 DYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANW--VLHRDLKPANILVMGEGPERGRVKIADM  176 (405)
T ss_dssp             ECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECCSSTTTTCEEECCT
T ss_pred             eCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCC--EeCCCcCHHHeEEecCCCCCCcEEEEEC
Confidence            9997 5888777421       2235999999999999999999999999  9999999999999    77899999999


Q ss_pred             Cchhhhhhh------------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCCh-------HHHHHH
Q 006019          522 SFWNEIAMA------------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSL-------EDWAAD  581 (664)
Q Consensus       522 Gla~~~~~~------------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~-------~~~~~~  581 (664)
                      |+++.....            ...+.+||.... ..++.++|||||||++|||+||+.||.......       .+....
T Consensus       177 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~l~~  256 (405)
T 3rgf_A          177 GFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDR  256 (405)
T ss_dssp             TCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCCHHHHHH
T ss_pred             CCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccchHHHHHH
Confidence            999765321            223567886655 458999999999999999999999995332210       111111


Q ss_pred             HhcCCC-----CCcccc-------------CCCCCCCC---------HHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          582 YLSGVQ-----PLQQFV-------------DPTLSSFD---------EEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       582 ~~~~~~-----~~~~~~-------------d~~~~~~~---------~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      +.....     ....+.             ........         ......+.+|+.+||+.||++|||+.|+++.
T Consensus       257 i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L~h  334 (405)
T 3rgf_A          257 IFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQD  334 (405)
T ss_dssp             HHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             HHHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHHHHhcC
Confidence            111000     000000             00000000         0013467899999999999999999998873

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=6.2e-35  Score=301.39  Aligned_cols=243  Identities=21%  Similarity=0.318  Sum_probs=190.6

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCc----hhHHHHHHHHHHHHhccC-CCcccceEEEEecCCCce
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWP----KNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFT  447 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~----~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~  447 (664)
                      +.+.||+|+||.||+|+.. +++.||||.+.........    ....+.+.+|++++++++ ||||+++++++...+  .
T Consensus        21 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~--~   98 (298)
T 1phk_A           21 PKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNT--F   98 (298)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECSS--E
T ss_pred             eeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeeccCC--e
Confidence            3478999999999999975 6889999998754322211    223467889999999996 999999999998776  6


Q ss_pred             eEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhh
Q 006019          448 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~  527 (664)
                      .++||||+++|+|.+++..  ...+++..+..++.+++.||+|||+.+  ++||||||+||+++.++.+||+|||+++..
T Consensus        99 ~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~  174 (298)
T 1phk_A           99 FFLVFDLMKKGELFDYLTE--KVTLSEKETRKIMRALLEVICALHKLN--IVHRDLKPENILLDDDMNIKLTDFGFSCQL  174 (298)
T ss_dssp             EEEEEECCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             EEEEEeccCCCcHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCcceEEEcCCCcEEEecccchhhc
Confidence            7999999999999999864  356899999999999999999999998  999999999999999999999999998765


Q ss_pred             hhh--------hhhcccccccC------CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCcccc
Q 006019          528 AMA--------EMAATSKKLSS------APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFV  593 (664)
Q Consensus       528 ~~~--------~~~~~~pe~~~------~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (664)
                      ...        ...+.+||...      ...++.++||||||+++|||+||+.||..  ....+............   .
T Consensus       175 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~--~~~~~~~~~~~~~~~~~---~  249 (298)
T 1phk_A          175 DPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWH--RKQMLMLRMIMSGNYQF---G  249 (298)
T ss_dssp             CTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHTCCCC---C
T ss_pred             CCCcccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcC--ccHHHHHHHHhcCCccc---C
Confidence            321        23445676542      45578899999999999999999999943  23333333333221111   1


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          594 DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       594 d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .+.    ....+..+.+++.+||+.||++||++.|+++
T Consensus       250 ~~~----~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  283 (298)
T 1phk_A          250 SPE----WDDYSDTVKDLVSRFLVVQPQKRYTAEEALA  283 (298)
T ss_dssp             TTT----GGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             ccc----ccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence            111    1233456899999999999999999999875

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=4.8e-35  Score=325.11  Aligned_cols=242  Identities=18%  Similarity=0.219  Sum_probs=187.0

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCC--------chhHHHHHHHHHHHHhccCCCcccceEEEEecCC
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDW--------PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE  444 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~--------~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~  444 (664)
                      +.+.||+|+||.||+|+.. ++..+|+|++........        .....+.+.+|++++++++|||||++++++.+..
T Consensus        40 ~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~  119 (504)
T 3q5i_A           40 KVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDKK  119 (504)
T ss_dssp             EEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEEEECSS
T ss_pred             EEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCC
Confidence            3478999999999999975 578999999875432210        0123567999999999999999999999998876


Q ss_pred             CceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC---ceEeccc
Q 006019          445 PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY---AAKLSDL  521 (664)
Q Consensus       445 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~---~~kl~Df  521 (664)
                        ..++||||+++|+|.+++...  ..+++..+..|+.+++.||+|||+.+  |+||||||+|||++.++   .+||+||
T Consensus       120 --~~~lv~e~~~gg~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~--ivH~Dlkp~Nil~~~~~~~~~~kl~Df  193 (504)
T 3q5i_A          120 --YFYLVTEFYEGGELFEQIINR--HKFDECDAANIMKQILSGICYLHKHN--IVHRDIKPENILLENKNSLLNIKIVDF  193 (504)
T ss_dssp             --EEEEEEECCTTCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEESSTTCCSSEEECCC
T ss_pred             --EEEEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCC--eEeCCCcHHHEEEecCCCCccEEEEEC
Confidence              779999999999999988643  46999999999999999999999998  99999999999999776   6999999


Q ss_pred             Cchhhhhh--------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCcccc
Q 006019          522 SFWNEIAM--------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFV  593 (664)
Q Consensus       522 Gla~~~~~--------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (664)
                      |+++....        ....+.+||... ..++.++|||||||++|||++|+.||.  .....+.......+....... 
T Consensus       194 g~a~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~--~~~~~~~~~~i~~~~~~~~~~-  269 (504)
T 3q5i_A          194 GLSSFFSKDYKLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFG--GQNDQDIIKKVEKGKYYFDFN-  269 (504)
T ss_dssp             TTCEECCTTSCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSC--CSSHHHHHHHHHHCCCCCCHH-
T ss_pred             CCCEEcCCCCccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCC--CCCHHHHHHHHHcCCCCCCcc-
Confidence            99876532        233456777665 458899999999999999999999994  333444444443332111100 


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          594 DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       594 d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                        ..    ...+.++.+++.+||+.||.+|||+.|+++
T Consensus       270 --~~----~~~s~~~~~li~~~L~~dp~~R~t~~e~l~  301 (504)
T 3q5i_A          270 --DW----KNISDEAKELIKLMLTYDYNKRCTAEEALN  301 (504)
T ss_dssp             --HH----TTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             --cc----CCCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence              00    112356889999999999999999999986

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=3.8e-35  Score=319.48  Aligned_cols=187  Identities=15%  Similarity=0.161  Sum_probs=155.0

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC---ceeE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP---FTRM  449 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~---~~~~  449 (664)
                      +.+.||+|+||.||+|+.. ++..||||++.....   .....+.+.+|+++|++++||||+++++++.....   ...+
T Consensus        30 ~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~---~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  106 (432)
T 3n9x_A           30 IKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFE---DLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDELY  106 (432)
T ss_dssp             EEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTT---SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEE
T ss_pred             EEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhc---ChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCeEE
Confidence            4588999999999999965 588999999864322   13445789999999999999999999999976531   2579


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                      +||||++ |+|.+++.  ....+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....
T Consensus       107 lv~e~~~-~~L~~~~~--~~~~l~~~~~~~i~~qil~aL~~LH~~g--ivHrDlkp~NILl~~~~~~kL~DFGla~~~~~  181 (432)
T 3n9x_A          107 IVLEIAD-SDLKKLFK--TPIFLTEEHIKTILYNLLLGENFIHESG--IIHRDLKPANCLLNQDCSVKVCDFGLARTINS  181 (432)
T ss_dssp             EEEECCS-EEHHHHHH--SSCCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECTTCCEEECCCTTCEEC--
T ss_pred             EEEecCC-cCHHHHHh--ccCCCCHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCHHHeEECCCCCEEEccCCCcccccc
Confidence            9999997 59999986  3456999999999999999999999999  99999999999999999999999999986532


Q ss_pred             h-------------------------------hhhccccccc-CCCCCCcCCcchhhHHHHHHHHhCCCCc
Q 006019          530 A-------------------------------EMAATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPY  568 (664)
Q Consensus       530 ~-------------------------------~~~~~~pe~~-~~~~~s~ksDVySfGvvl~El~tG~~P~  568 (664)
                      .                               +..+.+||.. ....++.++|||||||++|||+||..||
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~  252 (432)
T 3n9x_A          182 EKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSH  252 (432)
T ss_dssp             -----------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTT
T ss_pred             cccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhccccc
Confidence            1                               2235567763 5566899999999999999999865554

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=1.7e-35  Score=321.74  Aligned_cols=186  Identities=19%  Similarity=0.223  Sum_probs=159.5

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc------CCCcccceEEEEecCCCc
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV------NHKNFVNLIGFCEEEEPF  446 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l------~H~niv~l~g~~~~~~~~  446 (664)
                      +.+.||+|+||.||+|+.. ++..||||++...      ....+++.+|+++++.+      +|+||+++++++...+  
T Consensus       101 ~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~------~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~--  172 (429)
T 3kvw_A          101 VLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE------KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRN--  172 (429)
T ss_dssp             EEEEEEESSSEEEEEEEETTTTEEEEEEEECSC------HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETT--
T ss_pred             EEEEcccCccEEEEEEEECCCCcEEEEEEECCc------cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCC--
Confidence            4588999999999999865 5889999998532      23456788888888877      5779999999998877  


Q ss_pred             eeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCc--eEecccCch
Q 006019          447 TRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA--AKLSDLSFW  524 (664)
Q Consensus       447 ~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~--~kl~DfGla  524 (664)
                      ..++||||+. |+|.+++.......+++..+..|+.+++.||+|||+.+  |+||||||+|||++.++.  +||+|||++
T Consensus       173 ~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivHrDlKp~NILl~~~~~~~vkL~DFG~a  249 (429)
T 3kvw_A          173 HICMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKNR--IIHCDLKPENILLKQQGRSGIKVIDFGSS  249 (429)
T ss_dssp             EEEEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHT--EECSCCSGGGEEESSTTSCCEEECCCTTC
T ss_pred             eEEEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHeEEccCCCcceEEeecccc
Confidence            7799999996 69999987666667999999999999999999999998  999999999999999987  999999998


Q ss_pred             hhhhh------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccC
Q 006019          525 NEIAM------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLV  570 (664)
Q Consensus       525 ~~~~~------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~  570 (664)
                      +....      ....+.+||......++.++|||||||++|||+||+.||..
T Consensus       250 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~  301 (429)
T 3kvw_A          250 CYEHQRVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPG  301 (429)
T ss_dssp             EETTCCCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             eecCCcccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCC
Confidence            65532      23456778887777889999999999999999999999953

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=100.00  E-value=8.5e-35  Score=300.85  Aligned_cols=222  Identities=18%  Similarity=0.295  Sum_probs=174.0

Q ss_pred             cccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHH-hccCCCcccceEEEEec--CCCceeEEE
Q 006019          376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTL-SKVNHKNFVNLIGFCEE--EEPFTRMMV  451 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l-~~l~H~niv~l~g~~~~--~~~~~~~lV  451 (664)
                      +.||+|+||.||+|.. .++..||+|++..          ...+.+|++++ +..+||||+++++++..  .+....++|
T Consensus        24 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~----------~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv   93 (299)
T 3m2w_A           24 QVLGLGINGKVLQIFNKRTQEKFALKMLQD----------CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIV   93 (299)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEC----------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEE
T ss_pred             cccccCCCeEEEEEEEcCCCcEEEEEEecc----------cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEEEE
Confidence            6799999999999996 4688999999852          13577888888 56699999999999875  112267999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecC---CCceEecccCchhhhh
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE---DYAAKLSDLSFWNEIA  528 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~---~~~~kl~DfGla~~~~  528 (664)
                      |||+++|+|.+++.......+++..+..++.+++.||+|||+.+  |+||||||+|||++.   ++.+||+|||+++...
T Consensus        94 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~  171 (299)
T 3m2w_A           94 MECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSIN--IAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT  171 (299)
T ss_dssp             ECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEESSSSTTCCEEECCCTTCEECT
T ss_pred             EeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHHEEEecCCCCCcEEEeccccccccc
Confidence            99999999999998665567999999999999999999999999  999999999999998   7899999999876543


Q ss_pred             hhhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC----HHH
Q 006019          529 MAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD----EEQ  604 (664)
Q Consensus       529 ~~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~  604 (664)
                                   ...++.++|||||||++|||+||+.||......  .    ...   .............+    ...
T Consensus       172 -------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~--~----~~~---~~~~~~~~~~~~~~~~~~~~~  229 (299)
T 3m2w_A          172 -------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGL--A----ISP---GMKTRIRMGQYEFPNPEWSEV  229 (299)
T ss_dssp             -------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------------C---CSCCSSCTTCCSSCHHHHTTS
T ss_pred             -------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcch--h----hhH---HHHHHHhhccccCCchhcccC
Confidence                         234677899999999999999999999432211  0    000   00011111111112    123


Q ss_pred             HHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          605 LETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      +.++.+++.+||+.||++||++.|+++
T Consensus       230 ~~~~~~li~~~l~~dP~~Rps~~e~l~  256 (299)
T 3m2w_A          230 SEEVKMLIRNLLKTEPTQRMTITEFMN  256 (299)
T ss_dssp             CHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CHHHHHHHHHHcccChhhCCCHHHHhc
Confidence            467899999999999999999999987

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.5e-35  Score=317.56  Aligned_cols=244  Identities=15%  Similarity=0.237  Sum_probs=181.0

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCC--------
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE--------  444 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~--------  444 (664)
                      +.+.||+|+||.||+|+. .+|..||||++.....         .+.+|+++|+.++|||||++++++....        
T Consensus        11 ~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~---------~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~~~   81 (383)
T 3eb0_A           11 LGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR---------YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKPPQ   81 (383)
T ss_dssp             EEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT---------SCCHHHHHHTTCCCTTBCCEEEEEEEC---------
T ss_pred             EEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc---------hHHHHHHHHHHcCCCCccchhheeeecCcccccccc
Confidence            448899999999999996 5789999999864322         1337999999999999999999985432        


Q ss_pred             ----------------------------CceeEEEEEecCCCChhhhhcc--cCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 006019          445 ----------------------------PFTRMMVFEYAPNGTLFEHIHI--KESEHLDWGMRLRIAMGMAYCLEHMHQL  494 (664)
Q Consensus       445 ----------------------------~~~~~lV~Ey~~~GsL~~~l~~--~~~~~l~~~~~~~ia~~ia~gL~yLH~~  494 (664)
                                                  ....++||||++ |+|.+.+..  .....+++..+..++.+++.||+|||+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~  160 (383)
T 3eb0_A           82 PPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSL  160 (383)
T ss_dssp             ----------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence                                        113689999998 588777753  2456799999999999999999999999


Q ss_pred             CCCeEEeCcCCCCeEec-CCCceEecccCchhhhhhh--------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhC
Q 006019          495 NPPIAHNYLNSSAVHLT-EDYAAKLSDLSFWNEIAMA--------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTG  564 (664)
Q Consensus       495 ~~~ivHrDLk~~NILld-~~~~~kl~DfGla~~~~~~--------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG  564 (664)
                      +  |+||||||+|||++ .++.+||+|||+++.....        ...+.+||...+ ..++.++|||||||++|||++|
T Consensus       161 g--i~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g  238 (383)
T 3eb0_A          161 G--ICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILG  238 (383)
T ss_dssp             T--EECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSCCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHS
T ss_pred             c--CccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCCCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHhC
Confidence            8  99999999999998 6899999999999865322        223557776554 4589999999999999999999


Q ss_pred             CCCccCCCCChHHHHHHHhcCC------------CCCccccCCCCCC------CCHHHHHHHHHHHHHhccCCCCCCCCH
Q 006019          565 RLPYLVDNGSLEDWAADYLSGV------------QPLQQFVDPTLSS------FDEEQLETLGELIKSCVRADPEKRPTM  626 (664)
Q Consensus       565 ~~P~~~~~~~~~~~~~~~~~~~------------~~~~~~~d~~~~~------~~~~~~~~l~~l~~~Cl~~~P~~RPs~  626 (664)
                      +.||...  ...+.....+...            .......-+....      ++...+..+.+++.+||+.||++|||+
T Consensus       239 ~~pf~~~--~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~  316 (383)
T 3eb0_A          239 KPLFSGE--TSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEPDLRINP  316 (383)
T ss_dssp             SCSSCCS--SHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCH
T ss_pred             CCCCCCC--ChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCChhhCCCH
Confidence            9999532  2222222111100            0000111111110      223344678999999999999999999


Q ss_pred             HHHHH
Q 006019          627 RDIAA  631 (664)
Q Consensus       627 ~ev~~  631 (664)
                      .|+++
T Consensus       317 ~e~l~  321 (383)
T 3eb0_A          317 YEAMA  321 (383)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            99974

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=3.7e-35  Score=318.22  Aligned_cols=250  Identities=19%  Similarity=0.250  Sum_probs=183.5

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecC----CCcee
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEE----EPFTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~----~~~~~  448 (664)
                      +.+.||+|+||.||+|+.. +|..||||++.....         .+.+|+++|++++|||||++++++...    +....
T Consensus        58 ~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~---------~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~  128 (420)
T 1j1b_A           58 DTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR---------FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYL  128 (420)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT---------SCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEE
T ss_pred             eeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch---------hHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeE
Confidence            3478999999999999975 589999999864321         234799999999999999999998542    22236


Q ss_pred             EEEEEecCCCChhhhhcc--cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCC-CceEecccCchh
Q 006019          449 MMVFEYAPNGTLFEHIHI--KESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED-YAAKLSDLSFWN  525 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~--~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~-~~~kl~DfGla~  525 (664)
                      ++||||+++ +|.+.+..  .....+++..+..++.|+++||+|||+.+  |+||||||+|||++.+ +.+||+|||+++
T Consensus       129 ~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~--ivHrDlkp~NILl~~~~~~~kl~DFG~a~  205 (420)
T 1j1b_A          129 NLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFG--ICHRDIKPQNLLLDPDTAVLKLCDFGSAK  205 (420)
T ss_dssp             EEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTT--EECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             Eeehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCChhhEEEeCCCCeEEeccchhhh
Confidence            799999986 66665542  24567999999999999999999999998  9999999999999965 678999999998


Q ss_pred             hhhhh--------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcC-----------
Q 006019          526 EIAMA--------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG-----------  585 (664)
Q Consensus       526 ~~~~~--------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~-----------  585 (664)
                      .....        ...+.+||.... ..++.++|||||||++|||+||+.||....  ..+....++..           
T Consensus       206 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~--~~~~l~~i~~~lg~p~~~~~~~  283 (420)
T 1j1b_A          206 QLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDS--GVDQLVEIIKVLGTPTREQIRE  283 (420)
T ss_dssp             ECCTTCCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHHHHCSCCHHHHHH
T ss_pred             hcccCCCceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHhCCCCHHHHHh
Confidence            65321        234567887654 468999999999999999999999995332  22211111110           


Q ss_pred             -CCCCccccCCCCCC------CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH--HHHhhh
Q 006019          586 -VQPLQQFVDPTLSS------FDEEQLETLGELIKSCVRADPEKRPTMRDIAA--ILREIT  637 (664)
Q Consensus       586 -~~~~~~~~d~~~~~------~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~--~L~~i~  637 (664)
                       ......+.-+.+..      ++.....++.+|+.+||+.||++||++.|+++  .++++.
T Consensus       284 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~hp~f~~~~  344 (420)
T 1j1b_A          284 MNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELR  344 (420)
T ss_dssp             HCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGGG
T ss_pred             hChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhCCHhhcccc
Confidence             00111111111111      12233467899999999999999999999985  344443

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=5e-35  Score=334.69  Aligned_cols=232  Identities=17%  Similarity=0.173  Sum_probs=189.5

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.+.||+|+||.||+|+.. +++.||||++.......  ....+.+..|..++..+ +||||+++++++.+.+  ..++|
T Consensus       345 ~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~--~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~--~~~lV  420 (674)
T 3pfq_A          345 FLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQ--DDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMD--RLYFV  420 (674)
T ss_dssp             EEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHH--TTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSS--EEEEE
T ss_pred             EEEEEccCCCEEEEEEEECCCCcEEEEEEEecccccc--HHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCC--EEEEE
Confidence            4488999999999999975 57889999997532111  12235688899999987 7999999999998776  77999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh--
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM--  529 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~--  529 (664)
                      |||+++|+|.++++..  ..+++..+..++.+|+.||+|||+.+  |+||||||+||||+.++.+||+|||+++....  
T Consensus       421 ~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~g--IiHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~  496 (674)
T 3pfq_A          421 MEYVNGGDLMYHIQQV--GRFKEPHAVFYAAEIAIGLFFLQSKG--IIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDG  496 (674)
T ss_dssp             EECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTS--EECCCCCSTTEEECSSSCEEECCCTTCEECCCTT
T ss_pred             EeCcCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCC--eEeccCChhhEEEcCCCcEEEeecceeeccccCC
Confidence            9999999999999743  46999999999999999999999998  99999999999999999999999999885321  


Q ss_pred             -------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          530 -------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       530 -------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                             ....+.+||......++.++|||||||++|||+||+.||..  .+..+....++.....           ++.
T Consensus       497 ~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~--~~~~~~~~~i~~~~~~-----------~p~  563 (674)
T 3pfq_A          497 VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEG--EDEDELFQSIMEHNVA-----------YPK  563 (674)
T ss_dssp             CCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHSSCCC-----------CCT
T ss_pred             cccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCC--CCHHHHHHHHHhCCCC-----------CCc
Confidence                   13345678888888899999999999999999999999943  3444555555443211           222


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCH
Q 006019          603 EQLETLGELIKSCVRADPEKRPTM  626 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~  626 (664)
                      ....++.+|+.+||+.||++||++
T Consensus       564 ~~s~~~~~li~~lL~~dP~~R~~~  587 (674)
T 3pfq_A          564 SMSKEAVAICKGLMTKHPGKRLGC  587 (674)
T ss_dssp             TSCHHHHHHHHHHSCSSSTTCTTC
T ss_pred             cCCHHHHHHHHHHccCCHHHCCCC
Confidence            334578999999999999999997

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=2e-34  Score=297.80  Aligned_cols=238  Identities=20%  Similarity=0.311  Sum_probs=183.4

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCC--------
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE--------  444 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~--------  444 (664)
                      +.+.||+|+||.||+|+.. +++.||||++...      ....+.+.+|++++++++||||+++++++.+..        
T Consensus        10 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~------~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~   83 (303)
T 1zy4_A           10 EIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT------EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTA   83 (303)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE------HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC----
T ss_pred             hhheeccCCcEEEEEEEEcCCCeEEEEEEEecc------HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcc
Confidence            4488999999999999964 7899999998642      234567999999999999999999999986531        


Q ss_pred             ---CceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEeccc
Q 006019          445 ---PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDL  521 (664)
Q Consensus       445 ---~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~Df  521 (664)
                         ....++||||+++|+|.++++. ....+++..+..++.+++.||+|||+.+  ++||||||+|||++.++.+||+||
T Consensus        84 ~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~~l~~LH~~~--i~H~dlkp~Nil~~~~~~~kl~df  160 (303)
T 1zy4_A           84 VKKKSTLFIQMEYCENGTLYDLIHS-ENLNQQRDEYWRLFRQILEALSYIHSQG--IIHRDLKPMNIFIDESRNVKIGDF  160 (303)
T ss_dssp             --CEEEEEEEEECCCSCBHHHHHHH-SCGGGCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEECTTSCEEECCC
T ss_pred             cccCCceEEEEecCCCCCHHHhhhc-cccccchHHHHHHHHHHHHHHHHHHhCC--eecccCCHHhEEEcCCCCEEEeeC
Confidence               2257899999999999999974 3456888999999999999999999998  999999999999999999999999


Q ss_pred             Cchhhhhh-----------------------hhhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHH
Q 006019          522 SFWNEIAM-----------------------AEMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLED  577 (664)
Q Consensus       522 Gla~~~~~-----------------------~~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~  577 (664)
                      |+++....                       ....+.+||.... ..++.++|||||||++|||+|   ||.. .....+
T Consensus       161 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~-~~~~~~  236 (303)
T 1zy4_A          161 GLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFST-GMERVN  236 (303)
T ss_dssp             CCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSS-HHHHHH
T ss_pred             cchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCC-chhHHH
Confidence            99875431                       1223456776654 368899999999999999998   4421 111122


Q ss_pred             HHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          578 WAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       578 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ...........    ..+   .++...+..+.+++.+||+.||++||++.++++
T Consensus       237 ~~~~~~~~~~~----~~~---~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  283 (303)
T 1zy4_A          237 ILKKLRSVSIE----FPP---DFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLN  283 (303)
T ss_dssp             HHHHHHSTTCC----CCT---TCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHhccccccc----cCc---cccccchHHHHHHHHHHHhcCcccCcCHHHHhC
Confidence            22222211111    111   123334456889999999999999999999986

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=4.2e-35  Score=305.47  Aligned_cols=244  Identities=14%  Similarity=0.180  Sum_probs=177.6

Q ss_pred             hcccccCCCeEEEEEEECC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCC---------
Q 006019          375 SNVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE---------  444 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~---------  444 (664)
                      .+.||+|+||.||+|+... ++.||+|++....     ....+++.+|++++++++||||+++++++....         
T Consensus        16 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-----~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~   90 (320)
T 2i6l_A           16 LKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTD-----PQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGS   90 (320)
T ss_dssp             EEECC-----CEEEEEETTTTEEEEEEEEECCS-----HHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----
T ss_pred             EEEeccCCCeEEEEEEECCCCeEEEEEEEecCC-----hHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccccccc
Confidence            4789999999999999764 8999999886432     344578999999999999999999999984321         


Q ss_pred             ---CceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEec-CCCceEecc
Q 006019          445 ---PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT-EDYAAKLSD  520 (664)
Q Consensus       445 ---~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld-~~~~~kl~D  520 (664)
                         ....++||||++ |+|.+++.   ...+++..+..++.+++.||+|||+.+  |+||||||+||+++ +++.+||+|
T Consensus        91 ~~~~~~~~lv~e~~~-~~L~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~Nil~~~~~~~~kl~D  164 (320)
T 2i6l_A           91 LTELNSVYIVQEYME-TDLANVLE---QGPLLEEHARLFMYQLLRGLKYIHSAN--VLHRDLKPANLFINTEDLVLKIGD  164 (320)
T ss_dssp             CCSCSEEEEEEECCS-EEHHHHHT---TCCCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCSGGGEEEETTTTEEEECC
T ss_pred             ccccCceeEEeeccC-CCHHHHhh---cCCccHHHHHHHHHHHHHHHHHHHhCC--EecCCCCHHHEEEcCCCCeEEEcc
Confidence               125789999998 69999885   346899999999999999999999998  99999999999998 567999999


Q ss_pred             cCchhhhhhh------------hhhcccccccC-CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCC
Q 006019          521 LSFWNEIAMA------------EMAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ  587 (664)
Q Consensus       521 fGla~~~~~~------------~~~~~~pe~~~-~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~  587 (664)
                      ||+++.....            ...+.+||... ...++.++||||||+++|||+||+.||...  ...+..........
T Consensus       165 fg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~--~~~~~~~~~~~~~~  242 (320)
T 2i6l_A          165 FGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGA--HELEQMQLILESIP  242 (320)
T ss_dssp             CTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHHSC
T ss_pred             CccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHhcC
Confidence            9998765321            22345666543 356889999999999999999999999532  22222222221110


Q ss_pred             CC------------cc-----ccCCCC--CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          588 PL------------QQ-----FVDPTL--SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       588 ~~------------~~-----~~d~~~--~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ..            ..     ...+..  .......+.++.+++.+||+.||++||++.|+++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  305 (320)
T 2i6l_A          243 VVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALS  305 (320)
T ss_dssp             CCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             CCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhC
Confidence            00            00     000000  0011123457899999999999999999999976

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=1.1e-34  Score=304.77  Aligned_cols=248  Identities=17%  Similarity=0.235  Sum_probs=190.3

Q ss_pred             hhhcccccCCCeEEEEEEE--CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCc------ccceEEEEecCC
Q 006019          373 DFSNVIGSSPIGTVYKGTL--SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN------FVNLIGFCEEEE  444 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~--~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~n------iv~l~g~~~~~~  444 (664)
                      .+.+.||+|+||.||+|..  .++..||||++...      ....+.+.+|+++++.++|+|      ++++++++...+
T Consensus        17 ~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~------~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~   90 (339)
T 1z57_A           17 EIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV------DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHG   90 (339)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS------HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETT
T ss_pred             EEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC------CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCC
Confidence            3458899999999999986  36889999998532      234567899999999987665      999999998877


Q ss_pred             CceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecC------------
Q 006019          445 PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE------------  512 (664)
Q Consensus       445 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~------------  512 (664)
                        ..++||||+ +++|.+++.......+++..+..++.+++.||+|||+.+  |+||||||+|||++.            
T Consensus        91 --~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~Dlkp~Nil~~~~~~~~~~~~~~~  165 (339)
T 1z57_A           91 --HICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNK--LTHTDLKPENILFVQSDYTEAYNPKIK  165 (339)
T ss_dssp             --EEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEESCCCEEEEEC----
T ss_pred             --cEEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHCC--CcCCCCCHHHEEEeccccccccCCccc
Confidence              779999999 889999997665567899999999999999999999998  999999999999997            


Q ss_pred             -------CCceEecccCchhhhhh------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCCh-HHH
Q 006019          513 -------DYAAKLSDLSFWNEIAM------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSL-EDW  578 (664)
Q Consensus       513 -------~~~~kl~DfGla~~~~~------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~-~~~  578 (664)
                             ++.+||+|||+++....      ....+.+||......++.++|||||||++|||+||+.||....... ...
T Consensus       166 ~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~  245 (339)
T 1z57_A          166 RDERTLINPDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEHLAM  245 (339)
T ss_dssp             CEEEEESCCCEEECCCSSCEETTSCCCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHHHHHH
T ss_pred             cccccccCCCceEeeCcccccCccccccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHHHHHH
Confidence                   67899999999876532      2345667888877788999999999999999999999995332111 111


Q ss_pred             HHHHhcCCCC-------Cccc---------------------cCC--CCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHH
Q 006019          579 AADYLSGVQP-------LQQF---------------------VDP--TLSSFDEEQLETLGELIKSCVRADPEKRPTMRD  628 (664)
Q Consensus       579 ~~~~~~~~~~-------~~~~---------------------~d~--~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~e  628 (664)
                      ..........       ....                     ..+  ............+.+++.+||+.||++|||+.|
T Consensus       246 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e  325 (339)
T 1z57_A          246 MERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLRE  325 (339)
T ss_dssp             HHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHH
T ss_pred             HHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccCHHH
Confidence            1111100000       0000                     000  001123445678999999999999999999999


Q ss_pred             HHH
Q 006019          629 IAA  631 (664)
Q Consensus       629 v~~  631 (664)
                      +++
T Consensus       326 ll~  328 (339)
T 1z57_A          326 ALK  328 (339)
T ss_dssp             HTT
T ss_pred             Hhc
Confidence            875

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=8.5e-35  Score=307.96  Aligned_cols=246  Identities=15%  Similarity=0.177  Sum_probs=184.9

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCC---CceeE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE---PFTRM  449 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~---~~~~~  449 (664)
                      +.+.||+|+||.||+|+.. +|+.||||++....    .......+.+|++++++++||||+++++++....   ....+
T Consensus        15 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   90 (353)
T 2b9h_A           15 LKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFD----KPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEVY   90 (353)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEECCCS----SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCEE
T ss_pred             EeeEEcCCCCeEEEEEEECCCCcEEEEEeecccc----cchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceEE
Confidence            3478999999999999975 68899999985322    2344567899999999999999999999987541   12579


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                      +||||+. |+|.+++..   ..+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....
T Consensus        91 lv~e~~~-~~L~~~~~~---~~~~~~~~~~~~~qi~~~L~~LH~~~--ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~  164 (353)
T 2b9h_A           91 IIQELMQ-TDLHRVIST---QMLSDDHIQYFIYQTLRAVKVLHGSN--VIHRDLKPSNLLINSNCDLKVCDFGLARIIDE  164 (353)
T ss_dssp             EEECCCS-EEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEECTTCCEEECCCTTCEECC-
T ss_pred             EEEeccC-ccHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHeEEcCCCcEEEEeccccccccc
Confidence            9999997 699988863   46899999999999999999999998  99999999999999999999999999876531


Q ss_pred             h-------------------hhhccccccc-CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHh---cCC
Q 006019          530 A-------------------EMAATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYL---SGV  586 (664)
Q Consensus       530 ~-------------------~~~~~~pe~~-~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~---~~~  586 (664)
                      .                   ...+.+||.. ....++.++|||||||++|||++|+.||....  ..+......   ...
T Consensus       165 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~--~~~~~~~~~~~~~~~  242 (353)
T 2b9h_A          165 SAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRD--YRHQLLLIFGIIGTP  242 (353)
T ss_dssp             ---------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHCCC
T ss_pred             ccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCC--cHHHHHHHHHHhCCC
Confidence            1                   2235567754 34678899999999999999999999995322  222111111   000


Q ss_pred             C---CCccccC----------CCCC-----CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          587 Q---PLQQFVD----------PTLS-----SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       587 ~---~~~~~~d----------~~~~-----~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .   ....+..          +...     ........++.+++.+||+.||++||++.|+++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  305 (353)
T 2b9h_A          243 HSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALE  305 (353)
T ss_dssp             CSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             chhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence            0   0000000          0000     001123456889999999999999999999987

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=7.6e-35  Score=303.18  Aligned_cols=238  Identities=19%  Similarity=0.258  Sum_probs=185.7

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC--CCcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN--HKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~--H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.+.||+|+||.||+++..++..||||++......   ....+.+.+|++++++++  |+||+++++++...+  ..++|
T Consensus        32 ~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~---~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~--~~~lv  106 (313)
T 3cek_A           32 ILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEAD---NQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQ--YIYMV  106 (313)
T ss_dssp             EEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCC---HHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSS--EEEEE
T ss_pred             EEEEecCCCCEEEEEEEcCCCcEEEEEEecccccc---ccchHHHHHHHHHHHhccccCCceEEEEEEeecCC--EEEEE
Confidence            34789999999999999888999999998754322   345578999999999997  599999999998876  67999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh--
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM--  529 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~--  529 (664)
                      || +.+|+|.+++..  ...+++..+..++.+++.||+|||+.+  |+||||||+|||+++ +.+||+|||+++....  
T Consensus       107 ~e-~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~~~~~  180 (313)
T 3cek_A          107 ME-CGNIDLNSWLKK--KKSIDPWERKSYWKNMLEAVHTIHQHG--IVHSDLKPANFLIVD-GMLKLIDFGIANQMQPDT  180 (313)
T ss_dssp             EC-CCSEEHHHHHHH--CSSCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEEET-TEEEECCCSSSCC-----
T ss_pred             Ee-cCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--ceecCCCcccEEEEC-CeEEEeeccccccccCcc
Confidence            99 568899999864  346899999999999999999999998  999999999999974 8999999999876532  


Q ss_pred             ---------hhhhcccccccCC-----------CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCC
Q 006019          530 ---------AEMAATSKKLSSA-----------PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL  589 (664)
Q Consensus       530 ---------~~~~~~~pe~~~~-----------~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~  589 (664)
                               ....+.+||....           ..++.++||||||+++|||+||+.||...... ............. 
T Consensus       181 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~-~~~~~~~~~~~~~-  258 (313)
T 3cek_A          181 TSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQ-ISKLHAIIDPNHE-  258 (313)
T ss_dssp             ---------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSH-HHHHHHHHCTTSC-
T ss_pred             ccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHH-HHHHHHHHhcccc-
Confidence                     1234556776543           46788999999999999999999999533222 2222222221110 


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          590 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       590 ~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                              ...+......+.+++.+||+.||++||++.|+++.
T Consensus       259 --------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h  293 (313)
T 3cek_A          259 --------IEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAH  293 (313)
T ss_dssp             --------CCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             --------cCCcccchHHHHHHHHHHccCCcccCcCHHHHhcC
Confidence                    01111223568899999999999999999999864

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=5.3e-35  Score=311.20  Aligned_cols=248  Identities=17%  Similarity=0.164  Sum_probs=172.3

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCC----Ccee
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE----PFTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~----~~~~  448 (664)
                      +.+.||+|+||.||+|.. .+|..||||++.....   .....+.+.+|+++++.++||||+++++++....    ....
T Consensus        33 ~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~---~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~~~  109 (367)
T 2fst_X           33 NLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQ---SIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDV  109 (367)
T ss_dssp             EEEECC----CCEEEEEETTTTEEEEEEECSSTTS---SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCC
T ss_pred             EeeEEeecCCeEEEEEEECCCCCEEEEEEeCcccc---CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCCeE
Confidence            347899999999999985 4689999999864321   1344577899999999999999999999986531    1246


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++|+||+ +++|.+++..   ..+++..+..++.++++||+|||+.+  |+||||||+|||++.++.+||+|||+++...
T Consensus       110 ~lv~e~~-~~~L~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~g--ivH~Dlkp~NIll~~~~~~kL~DFG~a~~~~  183 (367)
T 2fst_X          110 YLVTHLM-GADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHSAD--IIHRDLKPSNLAVNEDCELKILDFGLARHTA  183 (367)
T ss_dssp             EEEEECC-CEECC--------CCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECTTCCEEECC--------
T ss_pred             EEEeccc-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC--eeeCCCCHhhEEECCCCCEEEeecccccccc
Confidence            8999999 6899988853   56999999999999999999999998  9999999999999999999999999998654


Q ss_pred             hh------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCC-CCccccC------
Q 006019          529 MA------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ-PLQQFVD------  594 (664)
Q Consensus       529 ~~------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~d------  594 (664)
                      ..      ...+.+||.... ..++.++|||||||++|||+||+.||...  +..+....+..... .......      
T Consensus       184 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~--~~~~~l~~i~~~~g~p~~~~~~~~~~~~  261 (367)
T 2fst_X          184 DEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT--DHIDQLKLILRLVGTPGAELLKKISSES  261 (367)
T ss_dssp             -------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCSCCHHHHTTCCCHH
T ss_pred             ccCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHhCCCCHHHHHHhhhHH
Confidence            22      234567776654 67899999999999999999999999532  22222221111000 0000000      


Q ss_pred             --------CCCCCC-----CHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          595 --------PTLSSF-----DEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       595 --------~~~~~~-----~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                              +.....     .......+.+|+.+||+.||++|||+.|+++.
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~h  312 (367)
T 2fst_X          262 ARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH  312 (367)
T ss_dssp             HHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             HHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcC
Confidence                    000000     01123568899999999999999999998763

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=5.6e-35  Score=311.78  Aligned_cols=247  Identities=15%  Similarity=0.201  Sum_probs=184.2

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCc----ee
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF----TR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~----~~  448 (664)
                      +.+.||+|+||.||+|+.. +|..||||++.....   .....+.+.+|+.++++++||||+++++++...+..    ..
T Consensus        46 ~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~  122 (371)
T 4exu_A           46 SPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQ---SEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDF  122 (371)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTS---SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCCCC
T ss_pred             EEeEEecCCCeEEEEEEECCCCCEEEEEEeccccc---chhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccceeE
Confidence            3478999999999999965 689999999864332   234567899999999999999999999999865521    23


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++||||+. |+|.+++.    ..+++..+..++.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++...
T Consensus       123 ~lv~e~~~-~~l~~~~~----~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~  195 (371)
T 4exu_A          123 YLVMPFMQ-TDLQKIMG----MEFSEEKIQYLVYQMLKGLKYIHSAG--VVHRDLKPGNLAVNEDCELKILDFGLARHAD  195 (371)
T ss_dssp             EEEEECCC-EEHHHHTT----SCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEECTTCCEEECSTTCC----
T ss_pred             EEEEcccc-ccHHHHhh----cCCCHHHHHHHHHHHHHHHHHHHHCC--CcCCCcCHHHeEECCCCCEEEEecCcccccc
Confidence            89999997 68888774    34999999999999999999999998  9999999999999999999999999998654


Q ss_pred             hh------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCC-cccc-------
Q 006019          529 MA------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL-QQFV-------  593 (664)
Q Consensus       529 ~~------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~-~~~~-------  593 (664)
                      ..      ...+.+||.... ..++.++|||||||++|||+||+.||...  +..+............ ....       
T Consensus       196 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~  273 (371)
T 4exu_A          196 AEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGK--DYLDQLTQILKVTGVPGTEFVQKLNDKA  273 (371)
T ss_dssp             ----CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCHHHHTTCSCHH
T ss_pred             cCcCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCC--ChHHHHHHHHHHhCCCcHHHHHHhhhhh
Confidence            32      233557776655 67899999999999999999999999432  2222222221100000 0000       


Q ss_pred             ---------CCC---CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          594 ---------DPT---LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       594 ---------d~~---~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                               ...   ...........+.+++.+||+.||++||++.|+++.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  324 (371)
T 4exu_A          274 AKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH  324 (371)
T ss_dssp             HHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             hhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcC
Confidence                     000   000111234678999999999999999999999763

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=1.1e-34  Score=312.00  Aligned_cols=251  Identities=17%  Similarity=0.218  Sum_probs=183.2

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC----ceeE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----FTRM  449 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~----~~~~  449 (664)
                      +.+.||+|+||.||+|+...+..+|+|++.....         ...+|+++++.++|||||++++++...+.    ...+
T Consensus        44 ~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~---------~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~  114 (394)
T 4e7w_A           44 NCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR---------FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLN  114 (394)
T ss_dssp             EEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT---------SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEE
T ss_pred             EeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc---------hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEE
Confidence            4578999999999999998777899998864321         12369999999999999999999965331    1368


Q ss_pred             EEEEecCCCChhhhhc-ccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEec-CCCceEecccCchhhh
Q 006019          450 MVFEYAPNGTLFEHIH-IKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT-EDYAAKLSDLSFWNEI  527 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~-~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld-~~~~~kl~DfGla~~~  527 (664)
                      +||||++++.+....+ ......+++..+..++.++++||+|||+.+  |+||||||+|||++ .++.+||+|||+++..
T Consensus       115 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~--ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~  192 (394)
T 4e7w_A          115 LVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIG--ICHRDIKPQNLLLDPPSGVLKLIDFGSAKIL  192 (394)
T ss_dssp             EEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEETTTTEEEECCCTTCEEC
T ss_pred             EEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCC--ccCCCCCHHHEEEcCCCCcEEEeeCCCcccc
Confidence            9999998754433322 123567999999999999999999999998  99999999999999 8999999999999765


Q ss_pred             hhh--------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCC------------
Q 006019          528 AMA--------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV------------  586 (664)
Q Consensus       528 ~~~--------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~------------  586 (664)
                      ...        ...+.+||...+ ..++.++|||||||++|||++|+.||....  ..+.........            
T Consensus       193 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~--~~~~l~~i~~~~g~p~~~~~~~~~  270 (394)
T 4e7w_A          193 IAGEPNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGES--GIDQLVEIIKVLGTPSREQIKTMN  270 (394)
T ss_dssp             CTTCCCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHHHHCCCCHHHHHHHC
T ss_pred             cCCCCCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHhCCCCHHHHHhhC
Confidence            321        234667886644 458999999999999999999999995332  222111111100            


Q ss_pred             CCCccccCCCCCC------CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH--HHhhh
Q 006019          587 QPLQQFVDPTLSS------FDEEQLETLGELIKSCVRADPEKRPTMRDIAAI--LREIT  637 (664)
Q Consensus       587 ~~~~~~~d~~~~~------~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~--L~~i~  637 (664)
                      .......-+....      ++.....++.+++.+||+.||++||++.|+++.  ++++.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~  329 (394)
T 4e7w_A          271 PNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALCHPFFDELR  329 (394)
T ss_dssp             GGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGSTTT
T ss_pred             hhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhcChhhhhhc
Confidence            0000000011110      122234578999999999999999999999863  44443

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=1.5e-34  Score=306.41  Aligned_cols=246  Identities=15%  Similarity=0.196  Sum_probs=186.2

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCc----ee
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF----TR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~----~~  448 (664)
                      +.+.||+|+||.||+|+.. +|..||||++.....   .....+.+.+|+.++++++||||+++++++...+..    ..
T Consensus        28 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~  104 (353)
T 3coi_A           28 SPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQ---SEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDF  104 (353)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTS---SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCC
T ss_pred             EeeeEecCCCeEEEEEEECCCCCEEEEEEeccccc---chHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccceeE
Confidence            3478999999999999974 689999999864322   234457899999999999999999999999765421    34


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++||||++ |+|.+++.    ..+++..+..++.+++.||+|||+.+  |+||||||+||+++.++.+||+|||+++...
T Consensus       105 ~lv~e~~~-~~l~~~~~----~~~~~~~~~~i~~qi~~al~~LH~~~--ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~  177 (353)
T 3coi_A          105 YLVMPFMQ-TDLQKIMG----LKFSEEKIQYLVYQMLKGLKYIHSAG--VVHRDLKPGNLAVNEDCELKILDFGLARHAD  177 (353)
T ss_dssp             EEEEECCS-EEGGGTTT----SCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSSCCGGGEEECTTCCEEECSTTCTTC--
T ss_pred             EEEecccc-CCHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEeECCCCcEEEeecccccCCC
Confidence            89999997 68988774    34899999999999999999999998  9999999999999999999999999988654


Q ss_pred             hh------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCC--------------
Q 006019          529 MA------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ--------------  587 (664)
Q Consensus       529 ~~------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~--------------  587 (664)
                      ..      ...+.+||.... ..++.++|||||||++|||+||+.||....  ..+..........              
T Consensus       178 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~  255 (353)
T 3coi_A          178 AEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKD--YLDQLTQILKVTGVPGTEFVQKLNDKA  255 (353)
T ss_dssp             ------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSC--HHHHHHHHHHHHCBCCHHHHTTCSCHH
T ss_pred             CCccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHhCCCCHHHHHHHhhHH
Confidence            22      233456776554 568899999999999999999999995332  2222211111000              


Q ss_pred             ------CCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          588 ------PLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       588 ------~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                            .......+.+..........+.+++.+||+.||++||++.++++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~  305 (353)
T 3coi_A          256 AKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT  305 (353)
T ss_dssp             HHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             HHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence                  00000111112222334567899999999999999999999975

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=2e-34  Score=308.79  Aligned_cols=187  Identities=19%  Similarity=0.217  Sum_probs=157.2

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CC-----cccceEEEEecCCCc
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HK-----NFVNLIGFCEEEEPF  446 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~-----niv~l~g~~~~~~~~  446 (664)
                      +.+.||+|+||.||+|+.. +++.||||++...      .....++..|+++++.++ |+     +|+++++++...+  
T Consensus        58 ~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~------~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~--  129 (382)
T 2vx3_A           58 IDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK------KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRN--  129 (382)
T ss_dssp             EEEEEEEETTEEEEEEEETTTTEEEEEEEECSS------HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETT--
T ss_pred             EEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc------HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCC--
Confidence            4478999999999999965 6789999998532      234567888999988885 55     4999999998877  


Q ss_pred             eeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEec--CCCceEecccCch
Q 006019          447 TRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT--EDYAAKLSDLSFW  524 (664)
Q Consensus       447 ~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld--~~~~~kl~DfGla  524 (664)
                      ..++||||++ |+|.+++.......+++..+..++.+++.||+|||.....|+||||||+|||++  .++.+||+|||++
T Consensus       130 ~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a  208 (382)
T 2vx3_A          130 HLCLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFGSS  208 (382)
T ss_dssp             EEEEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTSTTTCEECCCCSGGGEEESSTTSCCEEECCCTTC
T ss_pred             ceEEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccCCCCEEcCCCCcccEEEecCCCCcEEEEeccCc
Confidence            7799999996 599999976655679999999999999999999995433499999999999995  5788999999999


Q ss_pred             hhhhh------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCcc
Q 006019          525 NEIAM------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYL  569 (664)
Q Consensus       525 ~~~~~------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~  569 (664)
                      +....      ....+.+||......++.++|||||||++|||+||+.||.
T Consensus       209 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~  259 (382)
T 2vx3_A          209 CQLGQRIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFS  259 (382)
T ss_dssp             EETTCCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             eecccccccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            76532      2345678888888889999999999999999999999995

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=4.7e-35  Score=314.81  Aligned_cols=250  Identities=17%  Similarity=0.173  Sum_probs=189.2

Q ss_pred             hhhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC--------CCcccceEEEEecC
Q 006019          373 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN--------HKNFVNLIGFCEEE  443 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~--------H~niv~l~g~~~~~  443 (664)
                      .+.+.||+|+||.||+|+. .+++.||||++...      ....+.+.+|++++++++        |+||+++++++...
T Consensus        40 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~------~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~  113 (397)
T 1wak_A           40 HVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA------EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKIS  113 (397)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC------HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEE
T ss_pred             EEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC------CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeec
Confidence            3458899999999999986 46889999998532      234567899999999996        78899999998732


Q ss_pred             --CCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcC-CCCeEEeCcCCCCeEecCCC------
Q 006019          444 --EPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLTEDY------  514 (664)
Q Consensus       444 --~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~-~~~ivHrDLk~~NILld~~~------  514 (664)
                        .....++||||+ +|+|.+++.......+++..+..|+.+++.||+|||+. +  |+||||||+|||++.++      
T Consensus       114 ~~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~g--ivHrDikp~NIll~~~~~~~~~~  190 (397)
T 1wak_A          114 GVNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCR--IIHTDIKPENILLSVNEQYIRRL  190 (397)
T ss_dssp             ETTEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTC--EECCCCSGGGEEECCCHHHHHHH
T ss_pred             CCCCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhCC--EecCCCCHHHeeEeccchhhhhh
Confidence              222679999999 66777777655556799999999999999999999997 8  99999999999999775      


Q ss_pred             -------------------------------------------ceEecccCchhhhhh------hhhhcccccccCCCCC
Q 006019          515 -------------------------------------------AAKLSDLSFWNEIAM------AEMAATSKKLSSAPSA  545 (664)
Q Consensus       515 -------------------------------------------~~kl~DfGla~~~~~------~~~~~~~pe~~~~~~~  545 (664)
                                                                 .+||+|||+++....      ....+.+||......+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~  270 (397)
T 1wak_A          191 AAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGY  270 (397)
T ss_dssp             HHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBCSCSCCSCGGGCCHHHHHTSCC
T ss_pred             hhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEeccccccccccccCccCCCCCcccCChhhcCCCC
Confidence                                                       799999999876532      2345677888777778


Q ss_pred             CcCCcchhhHHHHHHHHhCCCCccCCCCC----hHHHHHHHhc---C------------------CCCCccccCCC----
Q 006019          546 SLESNVYNFGVLLFEMVTGRLPYLVDNGS----LEDWAADYLS---G------------------VQPLQQFVDPT----  596 (664)
Q Consensus       546 s~ksDVySfGvvl~El~tG~~P~~~~~~~----~~~~~~~~~~---~------------------~~~~~~~~d~~----  596 (664)
                      +.++|||||||++|||+||+.||......    ..+.......   .                  ......+.+..    
T Consensus       271 ~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (397)
T 1wak_A          271 NTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGL  350 (397)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCCCCH
T ss_pred             CcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccCCcch
Confidence            99999999999999999999999643221    1111111100   0                  00000000000    


Q ss_pred             ------CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          597 ------LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       597 ------~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                            ....+......+.+|+.+||+.||++|||+.|+++
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  391 (397)
T 1wak_A          351 FEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR  391 (397)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred             hHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence                  01234667778999999999999999999999875

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=1.3e-34  Score=303.24  Aligned_cols=240  Identities=20%  Similarity=0.285  Sum_probs=172.2

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHH-HHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKID-TLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~-~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      .+.||+|+||.||+|... +|+.||||++.....    .....++..|+. +++.++||||+++++++...+  ..++||
T Consensus        27 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~--~~~lv~  100 (327)
T 3aln_A           27 LGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVD----EKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREG--DCWICM  100 (327)
T ss_dssp             -CEEEECSSEEEEEEEETTTTEEEEEEEEECCCC----HHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             hheeccCCCEEEEEEEEcCCCCEEEEEEeecccC----chHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCC--ceEEEE
Confidence            478999999999999975 689999999875321    233445666666 778889999999999998876  679999


Q ss_pred             EecCCCChhhhhcc---cCCCCCCHHHHHHHHHHHHHHHHHhhcC-CCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          453 EYAPNGTLFEHIHI---KESEHLDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       453 Ey~~~GsL~~~l~~---~~~~~l~~~~~~~ia~~ia~gL~yLH~~-~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ||+++ +|.+++..   .....+++..+.+++.+++.||.|||+. +  |+||||||+|||++.++.+||+|||+++...
T Consensus       101 e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~--ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~  177 (327)
T 3aln_A          101 ELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLK--IIHRDIKPSNILLDRSGNIKLCDFGISGQLV  177 (327)
T ss_dssp             CCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHS--CCCSCCCGGGEEEETTTEEEECCCSSSCC--
T ss_pred             eecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCC--EeECCCCHHHEEEcCCCCEEEccCCCceecc
Confidence            99985 88776642   2356799999999999999999999997 8  9999999999999999999999999987653


Q ss_pred             h--------hhhhccccccc----CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCC
Q 006019          529 M--------AEMAATSKKLS----SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  596 (664)
Q Consensus       529 ~--------~~~~~~~pe~~----~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  596 (664)
                      .        ....+.+||..    ....++.++||||||+++|||+||+.||...... .+.......+       ..+.
T Consensus       178 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-~~~~~~~~~~-------~~~~  249 (327)
T 3aln_A          178 DSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSV-FDQLTQVVKG-------DPPQ  249 (327)
T ss_dssp             ----------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC--------CCCCCS-------CCCC
T ss_pred             cccccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchH-HHHHHHHhcC-------CCCC
Confidence            2        22345678876    4556789999999999999999999999532211 1111111110       0111


Q ss_pred             CC-CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          597 LS-SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       597 ~~-~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      +. .........+.+++.+||+.||++||++.++++
T Consensus       250 ~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~  285 (327)
T 3aln_A          250 LSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLK  285 (327)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             CCCcccccCCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence            11 111223456899999999999999999999975

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=2e-34  Score=303.30  Aligned_cols=238  Identities=18%  Similarity=0.260  Sum_probs=167.2

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCC--CceeEEEE
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE--PFTRMMVF  452 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~--~~~~~lV~  452 (664)
                      +.||+|+||.||+|+.. +++.||||++....         ....+....++.++||||+++++++....  ....++||
T Consensus        35 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~---------~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~  105 (336)
T 3fhr_A           35 QVLGLGVNGKVLECFHRRTGQKCALKLLYDSP---------KARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLLIIM  105 (336)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEESSH---------HHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred             eeeeeCCCeEEEEEEECCCCCEEEEEEecCcH---------HHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceEEEEE
Confidence            56999999999999976 68999999985321         11222333456779999999999986521  12478999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecC---CCceEecccCchhhhhh
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE---DYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~---~~~~kl~DfGla~~~~~  529 (664)
                      ||+++|+|.+++.......+++..+..++.+++.||+|||+.+  |+||||||+|||++.   ++.+||+|||+++....
T Consensus       106 e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~~--ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~  183 (336)
T 3fhr_A          106 ECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHN--IAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQ  183 (336)
T ss_dssp             ECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEESCSSTTCCEEECCCTTCEEC--
T ss_pred             eccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEEecCCCceEEEeccccceeccc
Confidence            9999999999998655567999999999999999999999998  999999999999986   45699999999875532


Q ss_pred             h-------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChH--HHHHHHhcCCCCCccccCCCCCCC
Q 006019          530 A-------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLE--DWAADYLSGVQPLQQFVDPTLSSF  600 (664)
Q Consensus       530 ~-------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~~~  600 (664)
                      .       ...+.+||......++.++||||||+++|||+||+.||........  ..........   .....+.    
T Consensus       184 ~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~---~~~~~~~----  256 (336)
T 3fhr_A          184 NALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQ---YGFPNPE----  256 (336)
T ss_dssp             --------------------CHHHHHHHHHHHHHHHHHHHHSSCCC------------------------CCCTTT----
T ss_pred             cccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHHhhhccc---cccCchh----
Confidence            2       2345678887777788899999999999999999999953321110  0000000000   0001111    


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          601 DEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       601 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ....+..+.+++.+||+.||++||++.|+++
T Consensus       257 ~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  287 (336)
T 3fhr_A          257 WSEVSEDAKQLIRLLLKTDPTERLTITQFMN  287 (336)
T ss_dssp             STTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             hccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            1223456889999999999999999999997

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=1.5e-34  Score=306.98  Aligned_cols=254  Identities=16%  Similarity=0.205  Sum_probs=175.7

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC-----cee
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP-----FTR  448 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~-----~~~  448 (664)
                      .+.||+|+||.||+|+.. ++..||||++......      ...+.+|++.++.++||||+++++++...+.     ...
T Consensus        28 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~------~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~  101 (360)
T 3e3p_A           28 ERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRF------RNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDRRDIYL  101 (360)
T ss_dssp             C----------CEEEEETTTCCEEEEEEEECCTTC------CCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSCTTCEEE
T ss_pred             EEEEecCCCeEEEEEEECCCCCEEEEEEEecCccc------cHHHHHHHHHHHhcCCCCcccHHHhhhccccccccceeE
Confidence            488999999999999975 6899999988543221      2356788888999999999999999965331     126


Q ss_pred             EEEEEecCCCChhhhhcc--cCCCCCCHHHHHHHHHHHHHHHHHhh--cCCCCeEEeCcCCCCeEecC-CCceEecccCc
Q 006019          449 MMVFEYAPNGTLFEHIHI--KESEHLDWGMRLRIAMGMAYCLEHMH--QLNPPIAHNYLNSSAVHLTE-DYAAKLSDLSF  523 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~--~~~~~l~~~~~~~ia~~ia~gL~yLH--~~~~~ivHrDLk~~NILld~-~~~~kl~DfGl  523 (664)
                      ++||||+++ +|.+.+..  .....+++..+..++.+++.||.|||  +.+  |+||||||+|||++. ++.+||+|||+
T Consensus       102 ~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~--ivH~Dlkp~NIll~~~~~~~kl~Dfg~  178 (360)
T 3e3p_A          102 NVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVN--VCHRDIKPHNVLVNEADGTLKLCDFGS  178 (360)
T ss_dssp             EEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTTC--CBCSCCCGGGEEEETTTTEEEECCCTT
T ss_pred             EEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCCC--eecCcCCHHHEEEeCCCCcEEEeeCCC
Confidence            899999986 55444332  24567899999999999999999999  777  999999999999997 89999999999


Q ss_pred             hhhhhhh--------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCC--------
Q 006019          524 WNEIAMA--------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGV--------  586 (664)
Q Consensus       524 a~~~~~~--------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~--------  586 (664)
                      ++.....        ...+.+||.... ..++.++|||||||++|||+||+.||....  ..+.........        
T Consensus       179 a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~  256 (360)
T 3e3p_A          179 AKKLSPSEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDN--SAGQLHEIVRVLGCPSREVL  256 (360)
T ss_dssp             CBCCCTTSCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHHHHCCCCHHHH
T ss_pred             ceecCCCCCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCC--hHHHHHHHHHHcCCCCHHHH
Confidence            9765322        334567886644 448999999999999999999999995322  222222111100        


Q ss_pred             ------CCCccccCCC-------CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH--HHhhhCC
Q 006019          587 ------QPLQQFVDPT-------LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI--LREITGI  639 (664)
Q Consensus       587 ------~~~~~~~d~~-------~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~--L~~i~~~  639 (664)
                            .......+..       ..........++.+++.+||+.||++|||+.|+++.  ++++...
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~  324 (360)
T 3e3p_A          257 RKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCHPYFDELHDP  324 (360)
T ss_dssp             HHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTSGGGGGGGCT
T ss_pred             HhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhcCccccccCCc
Confidence                  0000000000       011122245679999999999999999999999863  5555443

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=2.2e-34  Score=306.40  Aligned_cols=248  Identities=15%  Similarity=0.168  Sum_probs=184.6

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC---ceeE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP---FTRM  449 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~---~~~~  449 (664)
                      +.+.||+|+||.||+|+.. ++..||||++....    .....+.+.+|++++++++||||+++++++.....   ...+
T Consensus        31 ~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~  106 (364)
T 3qyz_A           31 NLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFE----HQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVY  106 (364)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEECCTT----CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEE
T ss_pred             EEEEeecCCCeEEEEEEECCCCeEEEEEEecccc----CcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceEE
Confidence            4478999999999999965 68899999986422    13445789999999999999999999999965421   2469


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                      +|+||++ |+|.+++..   ..+++..+..|+.+++.||+|||+.+  |+||||||+|||++.++.+||+|||+++....
T Consensus       107 iv~e~~~-~~L~~~l~~---~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~  180 (364)
T 3qyz_A          107 IVQDLME-TDLYKLLKT---QHLSNDHICYFLYQILRGLKYIHSAN--VLHRDLKPSNLLLNTTCDLKICDFGLARVADP  180 (364)
T ss_dssp             EEEECCS-EEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECTTCCEEECCCTTCEECCG
T ss_pred             EEEcccC-cCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCChHhEEECCCCCEEEEeCcceEecCC
Confidence            9999997 599998863   35999999999999999999999998  99999999999999999999999999876532


Q ss_pred             h------------hhhccccccc-CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCC-ChHHHHHHHhcCCCC--C----
Q 006019          530 A------------EMAATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG-SLEDWAADYLSGVQP--L----  589 (664)
Q Consensus       530 ~------------~~~~~~pe~~-~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~-~~~~~~~~~~~~~~~--~----  589 (664)
                      .            ...+.+||.. ....++.++|||||||++|||+||+.||..... .....+.........  .    
T Consensus       181 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~  260 (364)
T 3qyz_A          181 DHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCII  260 (364)
T ss_dssp             GGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHHHHHCSCCHHHHHTCC
T ss_pred             CCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhh
Confidence            2            2335567754 344578999999999999999999999953221 111111111100000  0    


Q ss_pred             --------ccccCCCCC---CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          590 --------QQFVDPTLS---SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       590 --------~~~~d~~~~---~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                              .....+...   .........+.+++.+||+.||++|||+.|+++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  313 (364)
T 3qyz_A          261 NLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA  313 (364)
T ss_dssp             CHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             hhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence                    000000000   001122356889999999999999999999986

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=100.00  E-value=4.4e-34  Score=297.75  Aligned_cols=239  Identities=17%  Similarity=0.230  Sum_probs=170.7

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||+|+.. +|+.||||++.....   .....+.+.++..+++.++||||+++++++.+.+  ..++|||
T Consensus        30 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~--~~~lv~e  104 (318)
T 2dyl_A           30 LGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGN---KEENKRILMDLDVVLKSHDCPYIVQCFGTFITNT--DVFIAME  104 (318)
T ss_dssp             EEEC------CEEEEEETTTCCEEEEEEEETTSC---HHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS--EEEEEEC
T ss_pred             cceeeecCCeeEEEEEEecCCeEEEEEEeccccc---chHHHHHHHHHHHHHHhcCCCceeeEEEEEecCC--cEEEEEe
Confidence            478999999999999975 689999999864332   1223344555666788899999999999998877  7799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcC-CCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~-~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      |+ ++.+.. +.......+++..+..++.+++.||+|||+. +  ++||||||+||+++.++.+||+|||+++.....  
T Consensus       105 ~~-~~~~~~-l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~--i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~  180 (318)
T 2dyl_A          105 LM-GTCAEK-LKKRMQGPIPERILGKMTVAIVKALYYLKEKHG--VIHRDVKPSNILLDERGQIKLCDFGISGRLVDDKA  180 (318)
T ss_dssp             CC-SEEHHH-HHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCGGGEEECTTSCEEECCCTTC--------
T ss_pred             cc-CCcHHH-HHHHhccCCCHHHHHHHHHHHHHHHHHHHhhCC--EEeCCCCHHHEEECCCCCEEEEECCCchhccCCcc
Confidence            99 444444 4333346789999999999999999999984 8  999999999999999999999999998765321  


Q ss_pred             ------hhhccccccc-----CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 006019          531 ------EMAATSKKLS-----SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  599 (664)
Q Consensus       531 ------~~~~~~pe~~-----~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  599 (664)
                            ...+.+||..     ....++.++|||||||++|||+||+.||.... ...+............    .+..  
T Consensus       181 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-~~~~~~~~~~~~~~~~----~~~~--  253 (318)
T 2dyl_A          181 KDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCK-TDFEVLTKVLQEEPPL----LPGH--  253 (318)
T ss_dssp             ------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCC-SHHHHHHHHHHSCCCC----CCSS--
T ss_pred             ccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCC-ccHHHHHHHhccCCCC----CCcc--
Confidence                  2345567766     34567889999999999999999999995322 2233333333321110    0111  


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          600 FDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       600 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                        ...+..+.+++.+||+.||++||++.++++
T Consensus       254 --~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  283 (318)
T 2dyl_A          254 --MGFSGDFQSFVKDCLTKDHRKRPKYNKLLE  283 (318)
T ss_dssp             --SCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             --CCCCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence              112346889999999999999999999986

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=100.00  E-value=3.1e-34  Score=312.38  Aligned_cols=235  Identities=16%  Similarity=0.253  Sum_probs=177.6

Q ss_pred             cccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      +.||+|+||+||.+...+|+.||||++...        ..+.+.+|+++++++ +|||||++++++.+.+  ..++||||
T Consensus        21 ~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~--------~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~--~~~lv~E~   90 (434)
T 2rio_A           21 KILGYGSSGTVVFQGSFQGRPVAVKRMLID--------FCDIALMEIKLLTESDDHPNVIRYYCSETTDR--FLYIALEL   90 (434)
T ss_dssp             EEEEECSTTCEEEEEESSSSEEEEEEEEGG--------GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSS--EEEEEECC
T ss_pred             CeEeeCCCeEEEEEEEECCeEEEEEEEcHH--------HHHHHHHHHHHHHhccCCCCcCeEEEEEecCC--eEEEEEec
Confidence            679999999998776678999999988532        234678999999986 8999999999998776  77999999


Q ss_pred             cCCCChhhhhcccCCCC-----CCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCC-------------Cce
Q 006019          455 APNGTLFEHIHIKESEH-----LDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED-------------YAA  516 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~-----l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~-------------~~~  516 (664)
                      +. |+|.+++.......     ..+..+..|+.+++.||+|||+.+  |+||||||+|||++.+             +.+
T Consensus        91 ~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~  167 (434)
T 2rio_A           91 CN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLK--IIHRDLKPQNILVSTSSRFTADQQTGAENLRI  167 (434)
T ss_dssp             CS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEECCHHHHSCCTTCCCSCEE
T ss_pred             CC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCC--ccccCCChHhEEEecCcccccccccCCCceEE
Confidence            95 69999986432211     133345789999999999999998  9999999999999754             589


Q ss_pred             EecccCchhhhhh-------------hhhhcccccccCC-------CCCCcCCcchhhHHHHHHHHh-CCCCccCCCCCh
Q 006019          517 KLSDLSFWNEIAM-------------AEMAATSKKLSSA-------PSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSL  575 (664)
Q Consensus       517 kl~DfGla~~~~~-------------~~~~~~~pe~~~~-------~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~  575 (664)
                      ||+|||+++....             ....+.+||....       ..++.++|||||||++|||+| |+.||.......
T Consensus       168 kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~  247 (434)
T 2rio_A          168 LISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRE  247 (434)
T ss_dssp             EECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHH
T ss_pred             EEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhH
Confidence            9999999876532             1234557776643       568899999999999999999 999995332221


Q ss_pred             HHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          576 EDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       576 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .    ............    ..........++.+++.+||+.||++||++.+|++
T Consensus       248 ~----~i~~~~~~~~~~----~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  295 (434)
T 2rio_A          248 S----NIIRGIFSLDEM----KCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLR  295 (434)
T ss_dssp             H----HHHHTCCCCCCC----TTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             H----HHhcCCCCcccc----cccccccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence            1    122221111111    01124556778999999999999999999999975

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.9e-35  Score=307.57  Aligned_cols=236  Identities=22%  Similarity=0.367  Sum_probs=178.3

Q ss_pred             HhhhhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCc-hhHHHHHHHHHHHHhcc----CCCcccceEEEEecCC
Q 006019          371 CEDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWP-KNLEVQFRKKIDTLSKV----NHKNFVNLIGFCEEEE  444 (664)
Q Consensus       371 ~~~~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~-~~~~~~f~~E~~~l~~l----~H~niv~l~g~~~~~~  444 (664)
                      .+.+.+.||+|+||.||+|+. .+++.||||++......... ......+.+|++++.++    +|+||+++++++...+
T Consensus        32 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~~~~  111 (312)
T 2iwi_A           32 EYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFETQE  111 (312)
T ss_dssp             -CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC----
T ss_pred             ceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEEecCC
Confidence            344568999999999999986 46889999998654322111 01223467899999998    8999999999998776


Q ss_pred             CceeEEEEEe-cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEec-CCCceEecccC
Q 006019          445 PFTRMMVFEY-APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT-EDYAAKLSDLS  522 (664)
Q Consensus       445 ~~~~~lV~Ey-~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld-~~~~~kl~DfG  522 (664)
                        ..++|+|| +++++|.+++..  ...+++..+..++.+++.||+|||+.+  |+||||||+||+++ .++.+||+|||
T Consensus       112 --~~~~v~e~~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~Nil~~~~~~~~kl~dfg  185 (312)
T 2iwi_A          112 --GFMLVLERPLPAQDLFDYITE--KGPLGEGPSRCFFGQVVAAIQHCHSRG--VVHRDIKDENILIDLRRGCAKLIDFG  185 (312)
T ss_dssp             ---CEEEEECCSSEEEHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHHT--EECCCCSGGGEEEETTTTEEEECCCS
T ss_pred             --eEEEEEEecCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eeecCCChhhEEEeCCCCeEEEEEcc
Confidence              56899999 799999999864  346899999999999999999999998  99999999999999 89999999999


Q ss_pred             chhhhhhh-------hhhcccccccCCCCC-CcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccC
Q 006019          523 FWNEIAMA-------EMAATSKKLSSAPSA-SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD  594 (664)
Q Consensus       523 la~~~~~~-------~~~~~~pe~~~~~~~-s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d  594 (664)
                      +++.....       ...+.+||....... +.++||||||+++|||+||+.||...    .+    ......       
T Consensus       186 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~----~~----~~~~~~-------  250 (312)
T 2iwi_A          186 SGALLHDEPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERD----QE----ILEAEL-------  250 (312)
T ss_dssp             SCEECCSSCBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH----HH----HHHTCC-------
T ss_pred             hhhhcccCcccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCCh----HH----Hhhhcc-------
Confidence            98765322       223455665443333 45899999999999999999999421    11    111100       


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          595 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       595 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                          ..+......+.+++.+||+.||++||++.|+++
T Consensus       251 ----~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~  283 (312)
T 2iwi_A          251 ----HFPAHVSPDCCALIRRCLAPKPSSRPSLEEILL  283 (312)
T ss_dssp             ----CCCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             ----CCcccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                112223356889999999999999999999987

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=9.3e-34  Score=299.78  Aligned_cols=248  Identities=15%  Similarity=0.211  Sum_probs=187.4

Q ss_pred             hhhcccccCCCeEEEEEEEC-CC-cEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCc------ccceEEEEecCC
Q 006019          373 DFSNVIGSSPIGTVYKGTLS-NG-VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN------FVNLIGFCEEEE  444 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~-~~-~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~n------iv~l~g~~~~~~  444 (664)
                      .+.+.||+|+||.||+|+.. ++ ..||+|++...      ....+.+.+|++++++++|++      ++.+.+++...+
T Consensus        22 ~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~------~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~   95 (355)
T 2eu9_A           22 EIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV------GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHG   95 (355)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC------HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETT
T ss_pred             EEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc------ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCC
Confidence            34588999999999999964 34 68999998532      234567889999999998776      899999998877


Q ss_pred             CceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEe--------------
Q 006019          445 PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL--------------  510 (664)
Q Consensus       445 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILl--------------  510 (664)
                        ..++||||+ +|+|.+++.......+++..+..|+.+++.||+|||+.+  |+||||||+|||+              
T Consensus        96 --~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~--ivH~Dlkp~NIll~~~~~~~~~~~~~~  170 (355)
T 2eu9_A           96 --HMCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQ--LTHTDLKPENILFVNSEFETLYNEHKS  170 (355)
T ss_dssp             --EEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTTT--EECCCCCGGGEEESCCCEEEEECCC-C
T ss_pred             --eEEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEEeccccccccccccc
Confidence              779999999 678888876555567999999999999999999999998  9999999999999              


Q ss_pred             -----cCCCceEecccCchhhhhh------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCC-hHHH
Q 006019          511 -----TEDYAAKLSDLSFWNEIAM------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGS-LEDW  578 (664)
Q Consensus       511 -----d~~~~~kl~DfGla~~~~~------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~-~~~~  578 (664)
                           +.++.+||+|||+++....      ....+.+||......++.++|||||||++|||+||+.||...... ....
T Consensus       171 ~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~  250 (355)
T 2eu9_A          171 CEEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREHLVM  250 (355)
T ss_dssp             CCEEEESCCCEEECCCTTCEETTSCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHH
T ss_pred             ccccccCCCcEEEeecCccccccccccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence                 6788999999999875432      234566788887788899999999999999999999999532211 1111


Q ss_pred             HHHHhcCC--------CCCccccC--------------------C--CCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHH
Q 006019          579 AADYLSGV--------QPLQQFVD--------------------P--TLSSFDEEQLETLGELIKSCVRADPEKRPTMRD  628 (664)
Q Consensus       579 ~~~~~~~~--------~~~~~~~d--------------------~--~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~e  628 (664)
                      ........        ........                    +  ............+.+++.+||+.||++|||+.|
T Consensus       251 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e  330 (355)
T 2eu9_A          251 MEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAE  330 (355)
T ss_dssp             HHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHH
T ss_pred             HHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcCHHH
Confidence            11111000        00000000                    0  000112334567899999999999999999999


Q ss_pred             HHH
Q 006019          629 IAA  631 (664)
Q Consensus       629 v~~  631 (664)
                      +++
T Consensus       331 ~l~  333 (355)
T 2eu9_A          331 ALL  333 (355)
T ss_dssp             HTT
T ss_pred             Hhc
Confidence            874

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=2.3e-34  Score=306.91  Aligned_cols=250  Identities=18%  Similarity=0.244  Sum_probs=189.4

Q ss_pred             hhhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-----------CCcccceEEEE
Q 006019          373 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-----------HKNFVNLIGFC  440 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-----------H~niv~l~g~~  440 (664)
                      .+.+.||+|+||.||+|+. .+++.||||++...      ....+.+.+|++++++++           |+||+++++++
T Consensus        22 ~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~------~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~   95 (373)
T 1q8y_A           22 ILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD------KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHF   95 (373)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC------HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEE
T ss_pred             EEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC------ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHh
Confidence            3558899999999999996 46899999998532      234567889999999886           89999999998


Q ss_pred             ecCC--CceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcC-CCCeEEeCcCCCCeEec------
Q 006019          441 EEEE--PFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLT------  511 (664)
Q Consensus       441 ~~~~--~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~-~~~ivHrDLk~~NILld------  511 (664)
                      ...+  ....++||||+ +++|.+++.......+++..+..|+.+++.||+|||+. +  |+||||||+|||++      
T Consensus        96 ~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~~--ivH~Dikp~NIll~~~~~~~  172 (373)
T 1q8y_A           96 NHKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCG--IIHTDIKPENVLMEIVDSPE  172 (373)
T ss_dssp             EEEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTC--EECSCCSGGGEEEEEEETTT
T ss_pred             hccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcCC--EEecCCChHHeEEeccCCCc
Confidence            7543  22568999999 89999999765566799999999999999999999997 8  99999999999995      


Q ss_pred             CCCceEecccCchhhhhh------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCC----hHHHHHH
Q 006019          512 EDYAAKLSDLSFWNEIAM------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGS----LEDWAAD  581 (664)
Q Consensus       512 ~~~~~kl~DfGla~~~~~------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~----~~~~~~~  581 (664)
                      .++.+||+|||+++....      ....+.+||......++.++|||||||++|||+||+.||......    ..+....
T Consensus       173 ~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~  252 (373)
T 1q8y_A          173 NLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQ  252 (373)
T ss_dssp             TEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHH
T ss_pred             CcceEEEcccccccccCCCCCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHHHHH
Confidence            445899999999876532      234566788877778899999999999999999999999643211    1111111


Q ss_pred             Hhc---------------------CCCCCccccCC----------CCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHH
Q 006019          582 YLS---------------------GVQPLQQFVDP----------TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIA  630 (664)
Q Consensus       582 ~~~---------------------~~~~~~~~~d~----------~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~  630 (664)
                      ...                     .......+...          ....++.....++.+++.+||+.||++|||+.|++
T Consensus       253 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell  332 (373)
T 1q8y_A          253 IIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLV  332 (373)
T ss_dssp             HHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHH
T ss_pred             HHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCHHHHh
Confidence            110                     00000000000          01124567778899999999999999999999998


Q ss_pred             H
Q 006019          631 A  631 (664)
Q Consensus       631 ~  631 (664)
                      +
T Consensus       333 ~  333 (373)
T 1q8y_A          333 N  333 (373)
T ss_dssp             T
T ss_pred             h
Confidence            7

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=100.00  E-value=5e-35  Score=305.67  Aligned_cols=234  Identities=20%  Similarity=0.350  Sum_probs=183.4

Q ss_pred             hhhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCch-hHHHHHHHHHHHHhccC--CCcccceEEEEecCCCcee
Q 006019          373 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPK-NLEVQFRKKIDTLSKVN--HKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~-~~~~~f~~E~~~l~~l~--H~niv~l~g~~~~~~~~~~  448 (664)
                      .+.+.||+|+||.||+|+. .+++.||||.+.......... ...+.+.+|++++++++  |+||+++++++...+  ..
T Consensus        46 ~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~~--~~  123 (320)
T 3a99_A           46 QVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPD--SF  123 (320)
T ss_dssp             EEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSS--EE
T ss_pred             EEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecCC--cE
Confidence            3458899999999999986 468999999997654332110 11245778999999996  599999999998877  67


Q ss_pred             EEEEEecCC-CChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEec-CCCceEecccCchhh
Q 006019          449 MMVFEYAPN-GTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT-EDYAAKLSDLSFWNE  526 (664)
Q Consensus       449 ~lV~Ey~~~-GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld-~~~~~kl~DfGla~~  526 (664)
                      ++|+||+.+ ++|.+++..  ...+++..+..++.+++.||+|||+.+  |+||||||+|||++ +++.+||+|||+++.
T Consensus       124 ~lv~e~~~~~~~L~~~l~~--~~~l~~~~~~~i~~qi~~~L~~LH~~~--ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~~  199 (320)
T 3a99_A          124 VLILERPEPVQDLFDFITE--RGALQEELARSFFWQVLEAVRHCHNCG--VLHRDIKDENILIDLNRGELKLIDFGSGAL  199 (320)
T ss_dssp             EEEEECCSSEEEHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred             EEEEEcCCCCccHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHCC--cEeCCCCHHHEEEeCCCCCEEEeeCccccc
Confidence            999999986 899999864  346899999999999999999999998  99999999999999 789999999999876


Q ss_pred             hhh-------hhhhcccccccCCCC-CCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 006019          527 IAM-------AEMAATSKKLSSAPS-ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       527 ~~~-------~~~~~~~pe~~~~~~-~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                      ...       ....+.+||...... .+.++||||||+++|||+||+.||...    .+    .......    .     
T Consensus       200 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~----~~----~~~~~~~----~-----  262 (320)
T 3a99_A          200 LKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD----EE----IIRGQVF----F-----  262 (320)
T ss_dssp             CCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH----HH----HHHCCCC----C-----
T ss_pred             cccccccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCCh----hh----hhccccc----c-----
Confidence            532       223455677654434 367899999999999999999999421    11    1111100    1     


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                        +...+.++.+++.+||+.||++||++.|+++
T Consensus       263 --~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  293 (320)
T 3a99_A          263 --RQRVSSECQHLIRWCLALRPSDRPTFEEIQN  293 (320)
T ss_dssp             --SSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             --cccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence              1122356889999999999999999999876

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-33  Score=306.54  Aligned_cols=233  Identities=18%  Similarity=0.268  Sum_probs=173.5

Q ss_pred             hcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||.||.....+++.||||++.....        ..+.+|+++++++ +|||||++++++.+..  ..++|||
T Consensus        29 ~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~--------~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~--~~~lv~E   98 (432)
T 3p23_A           29 KDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF--------SFADREVQLLRESDEHPNVIRYFCTEKDRQ--FQYIAIE   98 (432)
T ss_dssp             EEEEEECGGGCEEEEEESSSSEEEEEEECTTTE--------EECHHHHHHHHHSCCCTTBCCEEEEEEETT--EEEEEEE
T ss_pred             CCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH--------HHHHHHHHHHHhccCCCCcCeEEEEEecCC--EEEEEEE
Confidence            378999999996655556789999999854221        2356899999999 7999999999998877  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEec-----CCCceEecccCchhhhh
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT-----EDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld-----~~~~~kl~DfGla~~~~  528 (664)
                      |++ |+|.+++.... ....+..+..++.+++.||+|||+.+  |+||||||+|||++     .+..+||+|||+++...
T Consensus        99 ~~~-g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~--ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~  174 (432)
T 3p23_A           99 LCA-ATLQEYVEQKD-FAHLGLEPITLLQQTTSGLAHLHSLN--IVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLA  174 (432)
T ss_dssp             CCS-EEHHHHHHSSS-CCCCSSCHHHHHHHHHHHHHHHHHTT--CCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC-
T ss_pred             CCC-CCHHHHHHhcC-CCccchhHHHHHHHHHHHHHHHHHCc--CEeCCCCHHHEEEecCCCCCceeEEEecccceeecc
Confidence            996 69999987433 23444456789999999999999999  99999999999994     33468899999987653


Q ss_pred             h------------hhhhcccccccC---CCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccc
Q 006019          529 M------------AEMAATSKKLSS---APSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQF  592 (664)
Q Consensus       529 ~------------~~~~~~~pe~~~---~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~  592 (664)
                      .            ....+.+||...   ...++.++|||||||++|||+| |+.||.....   ......... ....  
T Consensus       175 ~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~---~~~~~~~~~-~~~~--  248 (432)
T 3p23_A          175 VGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQ---RQANILLGA-CSLD--  248 (432)
T ss_dssp             -----------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTT---HHHHHHTTC-CCCT--
T ss_pred             CCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhH---HHHHHHhcc-CCcc--
Confidence            2            123455788765   4556789999999999999999 9999843221   111111111 1110  


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          593 VDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       593 ~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                          ...........+.+++.+||+.||++||++.+|++
T Consensus       249 ----~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~  283 (432)
T 3p23_A          249 ----CLHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLK  283 (432)
T ss_dssp             ----TSCTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ----ccCccccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence                11112334556889999999999999999999983

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=100.00  E-value=7.4e-34  Score=318.96  Aligned_cols=260  Identities=18%  Similarity=0.242  Sum_probs=194.9

Q ss_pred             hhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCC----Cce
Q 006019          373 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE----PFT  447 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~----~~~  447 (664)
                      .+.+.||+|+||.||+|... +|..||||++....    .....+.|.+|++++++++||||+++++++....    ...
T Consensus        17 ~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~----~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~   92 (676)
T 3qa8_A           17 EMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQEL----SPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL   92 (676)
T ss_dssp             CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCC----CHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS
T ss_pred             EEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccC----CHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe
Confidence            45588999999999999964 68899999875421    2345678999999999999999999999976511    125


Q ss_pred             eEEEEEecCCCChhhhhcccC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCc---eEecccCc
Q 006019          448 RMMVFEYAPNGTLFEHIHIKE-SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA---AKLSDLSF  523 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~~-~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~---~kl~DfGl  523 (664)
                      .++||||+++|+|.+++.... ...+++..+..|+.+++.||+|||+.+  |+||||||+||+++.++.   +||+|||+
T Consensus        93 ~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~g--IVHrDLKP~NILl~~~g~~~~vKL~DFG~  170 (676)
T 3qa8_A           93 PLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENR--IIHRDLKPENIVLQPGPQRLIHKIIDLGY  170 (676)
T ss_dssp             CCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHTT--BCCCCCCSTTEEEECCSSSCEEEECSCCC
T ss_pred             EEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCC--CccCCCCHHHeEeecCCCceeEEEccccc
Confidence            689999999999999987532 346889999999999999999999998  999999999999997664   99999999


Q ss_pred             hhhhhhh--------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCC---CCccc
Q 006019          524 WNEIAMA--------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ---PLQQF  592 (664)
Q Consensus       524 a~~~~~~--------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~---~~~~~  592 (664)
                      ++.....        ...+.+||......++.++|||||||++|||+||+.||... ....+|.........   .....
T Consensus       171 a~~~~~~~~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~-~~~~~~~~~i~~~~~~~~~~~~~  249 (676)
T 3qa8_A          171 AKELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPN-WQPVQWHGKVREKSNEHIVVYDD  249 (676)
T ss_dssp             CCBTTSCCCCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSS-CHHHHSSTTCC------CCSCCC
T ss_pred             ccccccccccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcc-cchhhhhhhhhcccchhhhhhhh
Confidence            9875432        23456788888888999999999999999999999999532 122222211110000   00000


Q ss_pred             c------C---CCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHH-----HHHHHHhhhCC
Q 006019          593 V------D---PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRD-----IAAILREITGI  639 (664)
Q Consensus       593 ~------d---~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~e-----v~~~L~~i~~~  639 (664)
                      .      .   +.........+..+.+++.+||+.||++||++.+     ..+.++++...
T Consensus       250 l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l~~iL~~  310 (676)
T 3qa8_A          250 LTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQALDSILSL  310 (676)
T ss_dssp             CSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCCCCTTHHHHHHHHCC
T ss_pred             hccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHhcCHHHHHHHHHHhc
Confidence            0      0   1111234556788999999999999999999988     56777777654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=100.00  E-value=3.9e-33  Score=320.80  Aligned_cols=234  Identities=17%  Similarity=0.255  Sum_probs=181.5

Q ss_pred             hhhcccccCCCeEEEEEEEC--CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCc---e
Q 006019          373 DFSNVIGSSPIGTVYKGTLS--NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF---T  447 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~--~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~---~  447 (664)
                      .+.+.||+|+||.||+|+..  +++.||||++....    .......|.+|++++++++|||||++++++...+..   .
T Consensus        83 ~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~----~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~  158 (681)
T 2pzi_A           83 EVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSG----DAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV  158 (681)
T ss_dssp             EEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSC----CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred             EEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccC----CHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence            34588999999999999975  58999999875322    134456799999999999999999999999875521   1


Q ss_pred             eEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhh
Q 006019          448 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~  527 (664)
                      .++||||+++++|.+++..    .++|..+..|+.+|+.||+|||+.+  |+||||||+|||++.+ .+||+|||+++..
T Consensus       159 ~~lv~E~~~g~~L~~~~~~----~l~~~~~~~~~~qi~~aL~~lH~~g--iiHrDlkp~NIll~~~-~~kl~DFG~a~~~  231 (681)
T 2pzi_A          159 GYIVMEYVGGQSLKRSKGQ----KLPVAEAIAYLLEILPALSYLHSIG--LVYNDLKPENIMLTEE-QLKLIDLGAVSRI  231 (681)
T ss_dssp             EEEEEECCCCEECC----C----CCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECSS-CEEECCCTTCEET
T ss_pred             eEEEEEeCCCCcHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHCC--CeecccChHHeEEeCC-cEEEEecccchhc
Confidence            5999999999999987742    6999999999999999999999999  9999999999999986 8999999998866


Q ss_pred             hh-----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          528 AM-----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       528 ~~-----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                      ..     ....+.+||..... .+.++|||||||++|||++|..|+....          .   ....    .  .....
T Consensus       232 ~~~~~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g~~~~~~~~----------~---~~~~----~--~~~~~  291 (681)
T 2pzi_A          232 NSFGYLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLDLPTRNGRY----------V---DGLP----E--DDPVL  291 (681)
T ss_dssp             TCCSCCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSCCCEETTEE----------C---SSCC----T--TCHHH
T ss_pred             ccCCccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhCCCCCcccc----------c---cccc----c--ccccc
Confidence            43     23345667765443 3889999999999999999998873210          0   0000    0  00011


Q ss_pred             HHHHHHHHHHHHhccCCCCCCC-CHHHHHHHHHhhh
Q 006019          603 EQLETLGELIKSCVRADPEKRP-TMRDIAAILREIT  637 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RP-s~~ev~~~L~~i~  637 (664)
                      .....+.+++.+||+.||++|| +++++...|..+.
T Consensus       292 ~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~  327 (681)
T 2pzi_A          292 KTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVL  327 (681)
T ss_dssp             HHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHHH
Confidence            2335788999999999999999 5777777777653

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.98  E-value=2.8e-33  Score=302.85  Aligned_cols=234  Identities=13%  Similarity=0.163  Sum_probs=167.3

Q ss_pred             hcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCC-Ccccc----------eE-----
Q 006019          375 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH-KNFVN----------LI-----  437 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H-~niv~----------l~-----  437 (664)
                      .+.||+|+||.||+|+. .+|+.||||++.......  ....+.|.+|+.+++.++| +|...          +.     
T Consensus        83 ~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~--~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  160 (413)
T 3dzo_A           83 GTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPP--SNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDP  160 (413)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC------CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEEECC
T ss_pred             ecccccCCCEEEEEEEecCCCCceEEEEEecCCCcc--HHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhcccC
Confidence            47899999999999995 468999999886433222  2234679999999999987 32211          11     


Q ss_pred             ------EEEecCC---CceeEEEEEecCCCChhhhhc-----ccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCc
Q 006019          438 ------GFCEEEE---PFTRMMVFEYAPNGTLFEHIH-----IKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYL  503 (664)
Q Consensus       438 ------g~~~~~~---~~~~~lV~Ey~~~GsL~~~l~-----~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDL  503 (664)
                            .+.....   ....+++|+++ +|+|.+++.     ......+++..++.|+.|++.||+|||+.+  |+||||
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~--iiHrDi  237 (413)
T 3dzo_A          161 QKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYG--LVHTYL  237 (413)
T ss_dssp             C---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTT--EECSCC
T ss_pred             CCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCc
Confidence                  1111111   11345666655 689998884     223456889999999999999999999998  999999


Q ss_pred             CCCCeEecCCCceEecccCchhhhhhh-----hhhccccccc----------CCCCCCcCCcchhhHHHHHHHHhCCCCc
Q 006019          504 NSSAVHLTEDYAAKLSDLSFWNEIAMA-----EMAATSKKLS----------SAPSASLESNVYNFGVLLFEMVTGRLPY  568 (664)
Q Consensus       504 k~~NILld~~~~~kl~DfGla~~~~~~-----~~~~~~pe~~----------~~~~~s~ksDVySfGvvl~El~tG~~P~  568 (664)
                      ||+|||++.++.+||+|||+++.....     ...+.+||..          ....++.++|||||||++|||+||+.||
T Consensus       238 Kp~NILl~~~~~~kL~DFG~a~~~~~~~~~~~g~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf  317 (413)
T 3dzo_A          238 RPVDIVLDQRGGVFLTGFEHLVRDGASAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPN  317 (413)
T ss_dssp             CGGGEEECTTCCEEECCGGGCEETTEEECCCCCTTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             ccceEEEecCCeEEEEeccceeecCCccccCCCCceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCCCC
Confidence            999999999999999999998755321     1456678876          4555788999999999999999999999


Q ss_pred             cCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHH
Q 006019          569 LVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIA  630 (664)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~  630 (664)
                      .....  .          .....+.. .....+    ..+.+++.+||+.||++||++.+++
T Consensus       318 ~~~~~--~----------~~~~~~~~-~~~~~~----~~~~~li~~~l~~dP~~Rpt~~~~l  362 (413)
T 3dzo_A          318 TDDAA--L----------GGSEWIFR-SCKNIP----QPVRALLEGFLRYPKEDRLLPLQAM  362 (413)
T ss_dssp             CTTGG--G----------SCSGGGGS-SCCCCC----HHHHHHHHHHTCSSGGGSCCHHHHT
T ss_pred             CCcch--h----------hhHHHHHh-hcccCC----HHHHHHHHHHccCChhhCcCHHHHH
Confidence            43210  0          11111111 111222    5689999999999999999966553

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.97  E-value=2.4e-32  Score=287.34  Aligned_cols=238  Identities=12%  Similarity=0.121  Sum_probs=176.8

Q ss_pred             hhhhcccccCCCeEEEEEEECCCcEEEEEEeeecccCC---CchhHHHHHHHHHHHHhccC---------CCcccceEEE
Q 006019          372 EDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKD---WPKNLEVQFRKKIDTLSKVN---------HKNFVNLIGF  439 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~---~~~~~~~~f~~E~~~l~~l~---------H~niv~l~g~  439 (664)
                      +.+.+.||+|+||.||+|+. +|+.||||++.......   ......+.+.+|++++++++         |||||++.++
T Consensus        22 y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~~~  100 (336)
T 2vuw_A           22 LQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNSV  100 (336)
T ss_dssp             HHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEEEE
T ss_pred             chheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhcce
Confidence            44568999999999999998 68999999998654321   11223467889999998886         7777777776


Q ss_pred             EecC----------------------------CCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHh
Q 006019          440 CEEE----------------------------EPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM  491 (664)
Q Consensus       440 ~~~~----------------------------~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yL  491 (664)
                      +...                            +....++||||+++|++.+.+..   ..+++.....|+.|++.||+||
T Consensus       101 ~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~---~~~~~~~~~~i~~qi~~aL~~l  177 (336)
T 2vuw_A          101 HCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT---KLSSLATAKSILHQLTASLAVA  177 (336)
T ss_dssp             EEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT---TCCCHHHHHHHHHHHHHHHHHH
T ss_pred             eEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh---cCCCHHHHHHHHHHHHHHHHHH
Confidence            5310                            02267999999999987777642   5689999999999999999999


Q ss_pred             h-cCCCCeEEeCcCCCCeEecCCC--------------------ceEecccCchhhhhhh----hhhcccccccCCCCCC
Q 006019          492 H-QLNPPIAHNYLNSSAVHLTEDY--------------------AAKLSDLSFWNEIAMA----EMAATSKKLSSAPSAS  546 (664)
Q Consensus       492 H-~~~~~ivHrDLk~~NILld~~~--------------------~~kl~DfGla~~~~~~----~~~~~~pe~~~~~~~s  546 (664)
                      | +.+  |+||||||+|||++.++                    .+||+|||+++.....    ...+.+||...+.. +
T Consensus       178 H~~~~--ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~~~~gt~~y~aPE~~~g~~-~  254 (336)
T 2vuw_A          178 EASLR--FEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFTGDG-D  254 (336)
T ss_dssp             HHHHC--CBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETTEEECCCCTTCSGGGCCCS-S
T ss_pred             HHhCC--EeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCCcEEEeecccChhhhcCCC-c
Confidence            9 898  99999999999999887                    9999999999876432    34566788877555 8


Q ss_pred             cCCcchhhHHH-HHHHHhCCCCccCCCCChHHHHH----HHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCC
Q 006019          547 LESNVYNFGVL-LFEMVTGRLPYLVDNGSLEDWAA----DYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPE  621 (664)
Q Consensus       547 ~ksDVySfGvv-l~El~tG~~P~~~~~~~~~~~~~----~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~  621 (664)
                      .++||||+|++ .+++++|..||..     ..|..    ...... ..   ..............++.+++.+||+.|  
T Consensus       255 ~~~Diwsl~~~~~~~~~~g~~p~~~-----~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~s~~~~dli~~~L~~d--  323 (336)
T 2vuw_A          255 YQFDIYRLMKKENNNRWGEYHPYSN-----VLWLHYLTDKMLKQM-TF---KTKCNTPAMKQIKRKIQEFHRTMLNFS--  323 (336)
T ss_dssp             HHHHHHHHHHHHHTTCTTSCCTHHH-----HHHHHHHHHHHHHTC-CC---SSCCCSHHHHHHHHHHHHHHHHGGGSS--
T ss_pred             cceehhhhhCCCCcccccccCCCcc-----hhhhhHHHHhhhhhh-cc---CcccchhhhhhcCHHHHHHHHHHhccC--
Confidence            89999998777 7778899999831     11211    111110 00   011111223457788999999999976  


Q ss_pred             CCCCHHHHH
Q 006019          622 KRPTMRDIA  630 (664)
Q Consensus       622 ~RPs~~ev~  630 (664)
                         |++|++
T Consensus       324 ---sa~e~l  329 (336)
T 2vuw_A          324 ---SATDLL  329 (336)
T ss_dssp             ---SHHHHH
T ss_pred             ---CHHHHH
Confidence               888877

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.92  E-value=1.2e-25  Score=251.64  Aligned_cols=183  Identities=12%  Similarity=0.074  Sum_probs=123.1

Q ss_pred             cccccCCCeEEEEEE-ECCCcEEEEEEeeecccCCC-----chhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCcee
Q 006019          376 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDW-----PKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~-~~~~~~vavk~~~~~~~~~~-----~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~  448 (664)
                      ...+.|++|.+++++ +--|..+++|.+........     .....++|.+|+++|+++ .|+||+++++++.+.+  ..
T Consensus       240 ~~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~--~~  317 (569)
T 4azs_A          240 NQPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQ--SG  317 (569)
T ss_dssp             CC-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSS--EE
T ss_pred             hccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECC--EE
Confidence            346777777776655 33588899999875432211     123346799999999999 6999999999999877  78


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ||||||++||+|.+++..  ...++..   +|+.||+.||+|+|+++  ||||||||+|||+++++.+||+|||+++...
T Consensus       318 yLVMEyv~G~~L~d~i~~--~~~l~~~---~I~~QIl~AL~ylH~~G--IIHRDIKPeNILL~~dg~vKL~DFGlAr~~~  390 (569)
T 4azs_A          318 WLVMEKLPGRLLSDMLAA--GEEIDRE---KILGSLLRSLAALEKQG--FWHDDVRPWNVMVDARQHARLIDFGSIVTTP  390 (569)
T ss_dssp             EEEEECCCSEEHHHHHHT--TCCCCHH---HHHHHHHHHHHHHHHTT--CEESCCCGGGEEECTTSCEEECCCTTEESCC
T ss_pred             EEEEecCCCCcHHHHHHh--CCCCCHH---HHHHHHHHHHHHHHHCC--ceeccCchHhEEECCCCCEEEeecccCeeCC
Confidence            999999999999999964  3456653   58999999999999999  9999999999999999999999999998653


Q ss_pred             h---------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCc
Q 006019          529 M---------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPY  568 (664)
Q Consensus       529 ~---------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~  568 (664)
                      .         .+..+.+||...+ .+..++|+||+|++++++.++..|+
T Consensus       391 ~~~~~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~~  438 (569)
T 4azs_A          391 QDCSWPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSNW  438 (569)
T ss_dssp             ---CCSHHHHHHHHHHHHHHC------------------CCCCTTHHHH
T ss_pred             CCCccccCceechhhccHHHhCC-CCCCcccccccccchhhhccccchh
Confidence            2         2234456666543 3556778888888877776655443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=1.4e-24  Score=225.67  Aligned_cols=157  Identities=28%  Similarity=0.492  Sum_probs=147.5

Q ss_pred             cCchHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCc--cceeEecC----CcEEEEEeCCCCccc--cccccccCCC
Q 006019           26 WSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCS--WFGVECSD----GKVVNLNLKDLCLEG--TLAPEIQSLT   97 (664)
Q Consensus        26 ~~~~~~~~all~~k~~~~~~~~~~l~~W~~~~~~~~~C~--w~gv~C~~----~~v~~l~L~~~~l~g--~ip~~~~~l~   97 (664)
                      .|.++|++||++||+++. ||. .+.+|.   .+.+||.  |.||+|+.    ++|+.|+|++++++|  .+|+.+++++
T Consensus         2 ~c~~~~~~aL~~~k~~~~-~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~   76 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLG-NPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP   76 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTT-CCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCT
T ss_pred             CCCHHHHHHHHHHHHhcC-Ccc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCC
Confidence            367899999999999985 665 688996   4678998  99999984    799999999999999  9999999999


Q ss_pred             CCCEEEccC-CcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecccCcccccCCccccCCCCCCEeeC
Q 006019           98 HIKSIILRN-NSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQV  176 (664)
Q Consensus        98 ~L~~l~L~~-N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l  176 (664)
                      +|++|+|++ |.+.|.+|..|+++++|++|+|++|+++|.+|..++.+++|++|+|++|.++|.+|..+.++++|++|+|
T Consensus        77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  156 (313)
T 1ogq_A           77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF  156 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence            999999995 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccc
Q 006019          177 DEGQLSSAAKK  187 (664)
Q Consensus       177 ~~n~l~g~~p~  187 (664)
                      ++|+++|.+|.
T Consensus       157 ~~N~l~~~~p~  167 (313)
T 1ogq_A          157 DGNRISGAIPD  167 (313)
T ss_dssp             CSSCCEEECCG
T ss_pred             cCCcccCcCCH
Confidence            99999999986

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.88  E-value=1.5e-23  Score=233.51  Aligned_cols=176  Identities=12%  Similarity=0.128  Sum_probs=134.8

Q ss_pred             cccccCCCeEEEEEEECCCcEEEEEEeeecccCCC---chhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDW---PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.||+|+||.||+|.+ .+..+++|+.........   .....+.|.+|++++++++||||+++..++...+  ..++||
T Consensus       342 ~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~--~~~lVm  418 (540)
T 3en9_A          342 HLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLD--NKRIMM  418 (540)
T ss_dssp             ------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETT--TTEEEE
T ss_pred             CEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCC--ccEEEE
Confidence            6899999999999965 567888888755332211   0112456899999999999999997666666655  459999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++|+|.++++.          +..|+.|+++||+|||+++  |+||||||+|||++.  .+||+|||+++.....  
T Consensus       419 E~~~ggsL~~~l~~----------~~~i~~qi~~aL~~LH~~g--IiHrDiKp~NILl~~--~~kL~DFGla~~~~~~~~  484 (540)
T 3en9_A          419 SYINGKLAKDVIED----------NLDIAYKIGEIVGKLHKND--VIHNDLTTSNFIFDK--DLYIIDFGLGKISNLDED  484 (540)
T ss_dssp             ECCCSEEHHHHSTT----------CTHHHHHHHHHHHHHHHTT--EECTTCCTTSEEESS--SEEECCCTTCEECCCHHH
T ss_pred             ECCCCCCHHHHHHH----------HHHHHHHHHHHHHHHHHCc--CccCCCCHHHEEECC--eEEEEECccCEECCCccc
Confidence            99999999999863          5689999999999999999  999999999999999  9999999999865321  


Q ss_pred             --------------hhhcccccccCC--CCCCcCCcchhhHHHHHHHHhCCCCc
Q 006019          531 --------------EMAATSKKLSSA--PSASLESNVYNFGVLLFEMVTGRLPY  568 (664)
Q Consensus       531 --------------~~~~~~pe~~~~--~~~s~ksDVySfGvvl~El~tG~~P~  568 (664)
                                    +..+.+||+...  ..++.++|+||..+-.+|-+.++.+|
T Consensus       485 ~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY  538 (540)
T 3en9_A          485 KAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARY  538 (540)
T ss_dssp             HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCC
T ss_pred             cccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence                          123345666543  34677889999999999998888777

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.87  E-value=1e-22  Score=237.43  Aligned_cols=158  Identities=24%  Similarity=0.327  Sum_probs=102.0

Q ss_pred             hccCchHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCccceeEecCCcEEEEEeCCCCcccc---ccccccC-----
Q 006019           24 LCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGT---LAPEIQS-----   95 (664)
Q Consensus        24 ~~~~~~~~~~all~~k~~~~~~~~~~l~~W~~~~~~~~~C~w~gv~C~~~~v~~l~L~~~~l~g~---ip~~~~~-----   95 (664)
                      +..+.++|++||++||+++. ||. .+++|+   .+.+||+|.||+|+.++|+.|+|+++++.|.   +|+.+.+     
T Consensus         6 ~~~~~~~~~~all~~k~~~~-~~~-~l~~W~---~~~~~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~   80 (768)
T 3rgz_A            6 PSQSLYREIHQLISFKDVLP-DKN-LLPDWS---SNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE   80 (768)
T ss_dssp             --CCHHHHHHHHHHHHTTCS-CTT-SSTTCC---TTSCGGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred             cccCCHHHHHHHHHHHhhCC-Ccc-cccCCC---CCCCCcCCcceEECCCcEEEEECCCCCcCCccCccChhHhccCccc
Confidence            34456899999999999997 787 899997   5678999999999999999999999999998   7765554     


Q ss_pred             ------------------CCCCCEEEccCCcccccCCc--ccCCCCCCCEEEeecCcccccCCccc-cCCcccceeeccc
Q 006019           96 ------------------LTHIKSIILRNNSFSGIIPE--GFGELEELEVLDFGHNNFSGPLPNDL-GINHSLTILLLDN  154 (664)
Q Consensus        96 ------------------l~~L~~l~L~~N~l~g~ip~--~~~~l~~L~~L~l~~N~l~g~ip~~~-~~~~~L~~l~l~~  154 (664)
                                        +++|++|+|++|.++|.+|.  .+++|++|++|+|++|.++|.+|..+ .++++|++|+|++
T Consensus        81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~  160 (768)
T 3rgz_A           81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA  160 (768)
T ss_dssp             EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred             ccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence                              45555555555555555554  45555555555555555555555443 4455555555555


Q ss_pred             CcccccCCcc---ccCCCCCCEeeCCCCccccccc
Q 006019          155 NDFVGSLSPE---IYKLQVLSESQVDEGQLSSAAK  186 (664)
Q Consensus       155 N~~~g~iP~~---~~~l~~L~~l~l~~n~l~g~~p  186 (664)
                      |+++|.+|..   +.++++|++|++++|+++|.+|
T Consensus       161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  195 (768)
T 3rgz_A          161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVD  195 (768)
T ss_dssp             SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB
T ss_pred             CccCCcCChhhhhhccCCCCCEEECCCCcccccCC
Confidence            5555544444   3444444444444444444333

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.86  E-value=9.4e-22  Score=224.19  Aligned_cols=155  Identities=19%  Similarity=0.267  Sum_probs=139.3

Q ss_pred             hHHHHHHHHHHHhcccCCCC-------CCCCCCCCCCCCCCCcc---ceeEecC-CcEEEEEeCCCCccccccccccCCC
Q 006019           29 NDEGLALLRLRERVVRDPYG-------ALTSWRSCDTENNPCSW---FGVECSD-GKVVNLNLKDLCLEGTLAPEIQSLT   97 (664)
Q Consensus        29 ~~~~~all~~k~~~~~~~~~-------~l~~W~~~~~~~~~C~w---~gv~C~~-~~v~~l~L~~~~l~g~ip~~~~~l~   97 (664)
                      ..|+.||.+++.++..+...       ...+|+   .+.+||.|   .||+|+. ++|+.|+|++++++|.+|+++++|+
T Consensus        29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~  105 (636)
T 4eco_A           29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLT  105 (636)
T ss_dssp             HHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCT
T ss_pred             HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCc
Confidence            46889999999987643222       234786   56899999   9999975 7999999999999999999999999


Q ss_pred             CCCEEEccCC----------------------------------------------------------------------
Q 006019           98 HIKSIILRNN----------------------------------------------------------------------  107 (664)
Q Consensus        98 ~L~~l~L~~N----------------------------------------------------------------------  107 (664)
                      +|+.|+|++|                                                                      
T Consensus       106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~  185 (636)
T 4eco_A          106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD  185 (636)
T ss_dssp             TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred             cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhh
Confidence            9999999988                                                                      


Q ss_pred             --------cccccCCcccCCCCCCCEEEeecCccccc-----------------CCcccc--CCcccceeecccCccccc
Q 006019          108 --------SFSGIIPEGFGELEELEVLDFGHNNFSGP-----------------LPNDLG--INHSLTILLLDNNDFVGS  160 (664)
Q Consensus       108 --------~l~g~ip~~~~~l~~L~~L~l~~N~l~g~-----------------ip~~~~--~~~~L~~l~l~~N~~~g~  160 (664)
                              .++| ||..++++++|++|+|++|+|+|.                 +|..++  ++++|++|+|++|++.|.
T Consensus       186 l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~  264 (636)
T 4eco_A          186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK  264 (636)
T ss_dssp             TTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS
T ss_pred             hhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc
Confidence                    4456 999999999999999999999997                 999999  999999999999999999


Q ss_pred             CCccccCCCCCCEeeCCCCc-ccc-cccc
Q 006019          161 LSPEIYKLQVLSESQVDEGQ-LSS-AAKK  187 (664)
Q Consensus       161 iP~~~~~l~~L~~l~l~~n~-l~g-~~p~  187 (664)
                      +|..++++++|++|++++|+ ++| .+|.
T Consensus       265 ~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~  293 (636)
T 4eco_A          265 LPTFLKALPEMQLINVACNRGISGEQLKD  293 (636)
T ss_dssp             CCTTTTTCSSCCEEECTTCTTSCHHHHHH
T ss_pred             ChHHHhcCCCCCEEECcCCCCCccccchH
Confidence            99999999999999999998 999 8886

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.85  E-value=1.5e-21  Score=227.39  Aligned_cols=154  Identities=22%  Similarity=0.312  Sum_probs=138.7

Q ss_pred             chHHHHHHHHHHHhcccCCCCCCCCCCCCC--CCCCC--Ccc------------ceeEec-CCcEEEEEeCCCCcccccc
Q 006019           28 LNDEGLALLRLRERVVRDPYGALTSWRSCD--TENNP--CSW------------FGVECS-DGKVVNLNLKDLCLEGTLA   90 (664)
Q Consensus        28 ~~~~~~all~~k~~~~~~~~~~l~~W~~~~--~~~~~--C~w------------~gv~C~-~~~v~~l~L~~~~l~g~ip   90 (664)
                      ..+|+.||++||+++. +|     +|+...  .+.+|  |+|            .||+|+ .++|+.|+|++++|+|.+|
T Consensus       267 ~~~d~~ALl~~k~~l~-~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip  340 (876)
T 4ecn_A          267 YIKDYKALKAIWEALD-GK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVP  340 (876)
T ss_dssp             HHHHHHHHHHHHHHTT-GG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEEC
T ss_pred             chHHHHHHHHHHHHcC-CC-----CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCc
Confidence            3579999999999985 45     796221  12356  999            999998 4899999999999999999


Q ss_pred             ccccCCCCCCEEEc-cCCccccc---------------------------------------------------------
Q 006019           91 PEIQSLTHIKSIIL-RNNSFSGI---------------------------------------------------------  112 (664)
Q Consensus        91 ~~~~~l~~L~~l~L-~~N~l~g~---------------------------------------------------------  112 (664)
                      +++++|++|+.|+| ++|.++|.                                                         
T Consensus       341 ~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~  420 (876)
T 4ecn_A          341 DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD  420 (876)
T ss_dssp             GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCC
T ss_pred             hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccc
Confidence            99999999999999 88877666                                                         


Q ss_pred             -------------------CCcccCCCCCCCEEEeecCcccc-----------------cCCcccc--CCcccceeeccc
Q 006019          113 -------------------IPEGFGELEELEVLDFGHNNFSG-----------------PLPNDLG--INHSLTILLLDN  154 (664)
Q Consensus       113 -------------------ip~~~~~l~~L~~L~l~~N~l~g-----------------~ip~~~~--~~~~L~~l~l~~  154 (664)
                                         ||..|++|++|++|+|++|+|+|                 .+|..++  ++++|++|+|++
T Consensus       421 ~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~  500 (876)
T 4ecn_A          421 SRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN  500 (876)
T ss_dssp             CCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEES
T ss_pred             cccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcC
Confidence                               89999999999999999999999                 5999988  999999999999


Q ss_pred             CcccccCCccccCCCCCCEeeCCCCc-ccc-cccc
Q 006019          155 NDFVGSLSPEIYKLQVLSESQVDEGQ-LSS-AAKK  187 (664)
Q Consensus       155 N~~~g~iP~~~~~l~~L~~l~l~~n~-l~g-~~p~  187 (664)
                      |++.|.+|..++++++|+.|+|++|+ ++| .+|.
T Consensus       501 N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~  535 (876)
T 4ecn_A          501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA  535 (876)
T ss_dssp             CTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHH
T ss_pred             CCCCccChHHHhCCCCCCEEECcCCCCcccccchH
Confidence            99999999999999999999999998 999 8886

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.82  E-value=1.7e-20  Score=191.48  Aligned_cols=135  Identities=13%  Similarity=0.097  Sum_probs=108.1

Q ss_pred             hcccccCCCeEEEEEEECCCcEEEEEEeeecccCC-------------CchhHHHHHHHHHHHHhccCCCcccceEEEEe
Q 006019          375 SNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKD-------------WPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCE  441 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~-------------~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~  441 (664)
                      .+.||+|+||.||+|+..+|..||+|.+.......             |.......|.+|+++|++++  | +++.+++.
T Consensus        95 ~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~--~-~~v~~~~~  171 (282)
T 1zar_A           95 GKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ--G-LAVPKVYA  171 (282)
T ss_dssp             EEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--T-SSSCCEEE
T ss_pred             cCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--C-CCcCeEEe
Confidence            37899999999999999779999999986432110             00023567999999999999  4 66666654


Q ss_pred             cCCCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEeccc
Q 006019          442 EEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDL  521 (664)
Q Consensus       442 ~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~Df  521 (664)
                      ..   ..++||||+++|+|.+ +..        .....++.+++.||+|||+.+  |+||||||+|||++ ++.+||+||
T Consensus       172 ~~---~~~lvmE~~~g~~L~~-l~~--------~~~~~i~~qi~~~l~~lH~~g--iiHrDlkp~NILl~-~~~vkl~DF  236 (282)
T 1zar_A          172 WE---GNAVLMELIDAKELYR-VRV--------ENPDEVLDMILEEVAKFYHRG--IVHGDLSQYNVLVS-EEGIWIIDF  236 (282)
T ss_dssp             EE---TTEEEEECCCCEEGGG-CCC--------SCHHHHHHHHHHHHHHHHHTT--EECSCCSTTSEEEE-TTEEEECCC
T ss_pred             cc---ceEEEEEecCCCcHHH-cch--------hhHHHHHHHHHHHHHHHHHCC--CEeCCCCHHHEEEE-CCcEEEEEC
Confidence            43   3489999999999988 431        124469999999999999999  99999999999999 999999999


Q ss_pred             Cchhhh
Q 006019          522 SFWNEI  527 (664)
Q Consensus       522 Gla~~~  527 (664)
                      |+++..
T Consensus       237 G~a~~~  242 (282)
T 1zar_A          237 PQSVEV  242 (282)
T ss_dssp             TTCEET
T ss_pred             CCCeEC
Confidence            998755

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.79  E-value=2.1e-20  Score=195.31  Aligned_cols=157  Identities=15%  Similarity=0.205  Sum_probs=141.1

Q ss_pred             CchHHHHHHHHHHHhcccCCCCCCCCCCC-CCCCCCCCccceeEec----------CCcEEEEEeCCCCccccccccccC
Q 006019           27 SLNDEGLALLRLRERVVRDPYGALTSWRS-CDTENNPCSWFGVECS----------DGKVVNLNLKDLCLEGTLAPEIQS   95 (664)
Q Consensus        27 ~~~~~~~all~~k~~~~~~~~~~l~~W~~-~~~~~~~C~w~gv~C~----------~~~v~~l~L~~~~l~g~ip~~~~~   95 (664)
                      +..+|++||++||..+..|+.+.+++|.. .....++|.|.|+.|+          ..+|+.|+|++|+++ .+|+.+++
T Consensus        24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~  102 (328)
T 4fcg_A           24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFR  102 (328)
T ss_dssp             CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGG
T ss_pred             cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhh
Confidence            46789999999999987778776778831 0135788999999995          269999999999999 89999999


Q ss_pred             CCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecccCcccccCCccccC--------
Q 006019           96 LTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYK--------  167 (664)
Q Consensus        96 l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~--------  167 (664)
                      +++|++|+|++|.++ .+|..++++++|++|+|++|+++ .+|..++.+++|++|+|++|++.|.+|..++.        
T Consensus       103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~  180 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ  180 (328)
T ss_dssp             GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE
T ss_pred             CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhc
Confidence            999999999999999 99999999999999999999999 89999999999999999999999999998875        


Q ss_pred             -CCCCCEeeCCCCcccccccc
Q 006019          168 -LQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       168 -l~~L~~l~l~~n~l~g~~p~  187 (664)
                       +++|++|+|++|+++ .+|.
T Consensus       181 ~l~~L~~L~L~~n~l~-~lp~  200 (328)
T 4fcg_A          181 GLVNLQSLRLEWTGIR-SLPA  200 (328)
T ss_dssp             ESTTCCEEEEEEECCC-CCCG
T ss_pred             cCCCCCEEECcCCCcC-cchH
Confidence             999999999999999 7775

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.74  E-value=2.8e-18  Score=172.85  Aligned_cols=139  Identities=12%  Similarity=0.113  Sum_probs=104.0

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcE--EEEEEeeecccCCC-------------------chhHHHHHHHHHHHHhccCCC
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVE--IAVASVSVASAKDW-------------------PKNLEVQFRKKIDTLSKVNHK  431 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~--vavk~~~~~~~~~~-------------------~~~~~~~f~~E~~~l~~l~H~  431 (664)
                      +.+.||+|+||.||+|.. .+|..  ||||++........                   .......+.+|++.|.+++|+
T Consensus        51 i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~  130 (258)
T 1zth_A           51 MGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAKEA  130 (258)
T ss_dssp             EEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHHhC
Confidence            347899999999999997 68888  99998754321100                   011234688999999999988


Q ss_pred             cc--cceEEEEecCCCceeEEEEEecCC-C----ChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhh-cCCCCeEEeCc
Q 006019          432 NF--VNLIGFCEEEEPFTRMMVFEYAPN-G----TLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMH-QLNPPIAHNYL  503 (664)
Q Consensus       432 ni--v~l~g~~~~~~~~~~~lV~Ey~~~-G----sL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH-~~~~~ivHrDL  503 (664)
                      ++  ...+.+  .    ..+|||||+.+ |    +|.++...     .++.....++.+++.|+.||| +++  |+||||
T Consensus       131 ~i~~p~~~~~--~----~~~lVmE~~g~~g~~~~~L~~~~~~-----~~~~~~~~i~~qi~~~l~~lH~~~g--ivHrDl  197 (258)
T 1zth_A          131 GVSVPQPYTY--M----KNVLLMEFIGEDELPAPTLVELGRE-----LKELDVEGIFNDVVENVKRLYQEAE--LVHADL  197 (258)
T ss_dssp             TCCCCCEEEE--E----TTEEEEECCEETTEECCBHHHHGGG-----GGGSCHHHHHHHHHHHHHHHHHTSC--EECSSC
T ss_pred             CCCCCeEEEc--C----CCEEEEEecCCCCCccccHHHHhhc-----cChHHHHHHHHHHHHHHHHHHHHCC--EEeCCC
Confidence            64  344432  2    34899999942 4    55554321     223456789999999999999 898  999999


Q ss_pred             CCCCeEecCCCceEecccCchhhh
Q 006019          504 NSSAVHLTEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       504 k~~NILld~~~~~kl~DfGla~~~  527 (664)
                      ||+|||++.  .++|+|||++...
T Consensus       198 kp~NILl~~--~~~liDFG~a~~~  219 (258)
T 1zth_A          198 SEYNIMYID--KVYFIDMGQAVTL  219 (258)
T ss_dssp             STTSEEESS--SEEECCCTTCEET
T ss_pred             CHHHEEEcC--cEEEEECcccccC
Confidence            999999998  9999999998754

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.68  E-value=1.7e-16  Score=156.68  Aligned_cols=128  Identities=24%  Similarity=0.296  Sum_probs=115.0

Q ss_pred             CCCCCCccceeEecC-----------CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEE
Q 006019           58 TENNPCSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVL  126 (664)
Q Consensus        58 ~~~~~C~w~gv~C~~-----------~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L  126 (664)
                      .+...|+|++|.|+.           .+++.|+|++|.+++..|..+.++++|+.|+|++|.|++..+..|..+++|++|
T Consensus        14 ~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L   93 (229)
T 3e6j_A           14 PSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVL   93 (229)
T ss_dssp             CTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEE
Confidence            356789999999973           268899999999999888899999999999999999976555668999999999


Q ss_pred             EeecCcccccCCccccCCcccceeecccCcccccCCccccCCCCCCEeeCCCCccccccc
Q 006019          127 DFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (664)
Q Consensus       127 ~l~~N~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p  186 (664)
                      +|++|++++..+..+..+++|+.|+|++|+++ .+|..+.++++|++|+|++|++++..+
T Consensus        94 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~  152 (229)
T 3e6j_A           94 DLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH  152 (229)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred             ECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCH
Confidence            99999999766666889999999999999999 899999999999999999999996544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.66  E-value=2.3e-16  Score=151.28  Aligned_cols=125  Identities=20%  Similarity=0.272  Sum_probs=115.0

Q ss_pred             CccceeEecC-----------CcEEEEEeCCCCccccccc-cccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeec
Q 006019           63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH  130 (664)
Q Consensus        63 C~w~gv~C~~-----------~~v~~l~L~~~~l~g~ip~-~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~  130 (664)
                      |.|+.+.|+.           .+++.|+|++|.+++..+. .+..+++|+.|+|++|.|++.+|..|.++++|++|+|++
T Consensus         8 C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A            8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             ECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            7899999973           2789999999999876554 389999999999999999999999999999999999999


Q ss_pred             CcccccCCccccCCcccceeecccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          131 NNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       131 N~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      |++++..|..+..+++|++|+|++|++++.+|..+..+++|++|+|++|.|++..+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence            999998888899999999999999999999999999999999999999999988763

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.62  E-value=6.2e-16  Score=180.10  Aligned_cols=115  Identities=27%  Similarity=0.366  Sum_probs=87.7

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCcccc----------
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLG----------  142 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~----------  142 (664)
                      .+++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++++++|+.|+|++|+++|.+|..+.          
T Consensus       490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~  569 (768)
T 3rgz_A          490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF  569 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred             CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhc
Confidence            3677788888888888887788888888888888888888887777777888888777777777775432          


Q ss_pred             ------------------------------------------------------------CCcccceeecccCcccccCC
Q 006019          143 ------------------------------------------------------------INHSLTILLLDNNDFVGSLS  162 (664)
Q Consensus       143 ------------------------------------------------------------~~~~L~~l~l~~N~~~g~iP  162 (664)
                                                                                  .+++|+.|||++|+++|.||
T Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip  649 (768)
T 3rgz_A          570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP  649 (768)
T ss_dssp             TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC
T ss_pred             cccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC
Confidence                                                                        23567777777777777777


Q ss_pred             ccccCCCCCCEeeCCCCcccccccc
Q 006019          163 PEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       163 ~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      .++++++.|+.|+|++|+++|.||.
T Consensus       650 ~~l~~l~~L~~L~Ls~N~l~g~ip~  674 (768)
T 3rgz_A          650 KEIGSMPYLFILNLGHNDISGSIPD  674 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred             HHHhccccCCEEeCcCCccCCCCCh
Confidence            7777777777777777777777776

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.62  E-value=1.9e-15  Score=148.23  Aligned_cols=125  Identities=18%  Similarity=0.200  Sum_probs=114.2

Q ss_pred             CccceeEecCC-----------cEEEEEeCCCCccccccc-cccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeec
Q 006019           63 CSWFGVECSDG-----------KVVNLNLKDLCLEGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH  130 (664)
Q Consensus        63 C~w~gv~C~~~-----------~v~~l~L~~~~l~g~ip~-~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~  130 (664)
                      |.|..+.|++.           .++.|+|++|.|++..|. .+..+++|+.|+|++|.+++..|..|..+++|++|+|++
T Consensus        11 C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           11 CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            68999999732           568999999999987664 489999999999999999988888999999999999999


Q ss_pred             CcccccCCccccCCcccceeecccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          131 NNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       131 N~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      |++++..|..+..+++|++|+|++|++++..|..+.++++|++|+|++|++++..|.
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  147 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG  147 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH
Confidence            999987777899999999999999999999999999999999999999999998775

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=1.8e-15  Score=142.94  Aligned_cols=125  Identities=18%  Similarity=0.235  Sum_probs=109.7

Q ss_pred             CccceeEecC-----------CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecC
Q 006019           63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN  131 (664)
Q Consensus        63 C~w~gv~C~~-----------~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N  131 (664)
                      |+|.++.|+.           .+++.|+|++|++++..+..+..+++|+.|+|++|.+++..+..+..+++|++|+|++|
T Consensus         7 C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             EETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             eCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            7899999973           36899999999999766666899999999999999999776777899999999999999


Q ss_pred             cccccCCccccCCcccceeecccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          132 NFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       132 ~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      ++++..+..+..+++|++|+|++|++++..+..+.++++|++|+|++|.+++..|.
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  142 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  142 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence            99977666788999999999999999955444568899999999999999998774

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.61  E-value=2.7e-15  Score=147.11  Aligned_cols=125  Identities=22%  Similarity=0.261  Sum_probs=113.1

Q ss_pred             CccceeEecC-----------CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecC
Q 006019           63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN  131 (664)
Q Consensus        63 C~w~gv~C~~-----------~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N  131 (664)
                      |.|..|.|+.           .+++.|+|++|++++..+..+..+++|+.|+|++|.+++..|..|.++++|++|+|++|
T Consensus        11 C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             EETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             ECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            6899999973           26899999999999866668999999999999999999999999999999999999999


Q ss_pred             cccccCCccccCCcccceeecccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          132 NFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       132 ~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      +++...+..+..+++|++|+|++|++++..|..+..+++|++|+|++|++++..+.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  146 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG  146 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH
Confidence            99954444578899999999999999999999999999999999999999987664

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.60  E-value=4.6e-15  Score=144.02  Aligned_cols=126  Identities=21%  Similarity=0.263  Sum_probs=110.3

Q ss_pred             CCccceeEecC-----------CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeec
Q 006019           62 PCSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH  130 (664)
Q Consensus        62 ~C~w~gv~C~~-----------~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~  130 (664)
                      .|.|.+|.|+.           .+++.|+|++|++++..+..+.++++|+.|+|++|.+++..+..|..+++|++|+|++
T Consensus         6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A            6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            37899999973           2689999999999976656689999999999999999976666789999999999999


Q ss_pred             CcccccCCccccCCcccceeecccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          131 NNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       131 N~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      |++++..+..+..+++|++|+|++|++++..+..+.++++|++|++++|++++..+.
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  142 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG  142 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH
Confidence            999976666688999999999999999977676789999999999999999975553

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.58  E-value=7.7e-15  Score=146.92  Aligned_cols=113  Identities=21%  Similarity=0.233  Sum_probs=97.9

Q ss_pred             cEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecc
Q 006019           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~  153 (664)
                      .++.|+|++|++++..+..+.++++|+.|+|++|.+++..|..|.++++|++|+|++|++++..|..+..+++|++|+|+
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  115 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG  115 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence            47889999999998777789999999999999999998888888999999999999999997666778889999999999


Q ss_pred             cCcccccCCccccCCCCCCEeeCCCCccccccc
Q 006019          154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (664)
Q Consensus       154 ~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p  186 (664)
                      +|++++..|..+.++++|++|+|++|++++..+
T Consensus       116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  148 (251)
T 3m19_A          116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA  148 (251)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCcCCCcChhHhccCCcccEEECcCCcCCccCH
Confidence            999996666667889999999999999987655

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.58  E-value=2.5e-15  Score=157.56  Aligned_cols=139  Identities=6%  Similarity=0.040  Sum_probs=96.0

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccC-----C---Cc-hhHHHH--------HHHHHHHHhccCCCcccce
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAK-----D---WP-KNLEVQ--------FRKKIDTLSKVNHKNFVNL  436 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~-----~---~~-~~~~~~--------f~~E~~~l~~l~H~niv~l  436 (664)
                      +.+.||+|+||.||+|...+|+.||||+++.....     .   .. ......        ..+|...|.++.+.++.-.
T Consensus        99 I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv~vp  178 (397)
T 4gyi_A           99 VGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFPVP  178 (397)
T ss_dssp             EEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSCC
T ss_pred             ecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            45789999999999999989999999987542211     0   00 000111        2345566666644433221


Q ss_pred             EEEEecCCCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC--
Q 006019          437 IGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY--  514 (664)
Q Consensus       437 ~g~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~--  514 (664)
                      .-+...    ..+|||||++++.|.++...        .....++.+++.++.|||+++  ||||||||.|||+++++  
T Consensus       179 ~p~~~~----~~~LVME~i~G~~L~~l~~~--------~~~~~l~~qll~~l~~lH~~g--IVHrDLKp~NILl~~dgd~  244 (397)
T 4gyi_A          179 EPIAQS----RHTIVMSLVDALPMRQVSSV--------PDPASLYADLIALILRLAKHG--LIHGDFNEFNILIREEKDA  244 (397)
T ss_dssp             CEEEEE----TTEEEEECCSCEEGGGCCCC--------SCHHHHHHHHHHHHHHHHHTT--EECSCCSTTSEEEEEEECS
T ss_pred             eeeecc----CceEEEEecCCccHhhhccc--------HHHHHHHHHHHHHHHHHHHCC--CcCCCCCHHHEEEeCCCCc
Confidence            112111    22799999999888765431        123467899999999999998  99999999999999877  


Q ss_pred             --------ceEecccCchhh
Q 006019          515 --------AAKLSDLSFWNE  526 (664)
Q Consensus       515 --------~~kl~DfGla~~  526 (664)
                              .+.|+||+-+..
T Consensus       245 ~d~~~~~~~~~iID~~Q~V~  264 (397)
T 4gyi_A          245 EDPSSITLTPIIIXFPQMVS  264 (397)
T ss_dssp             SCTTSEEEEEEECCCTTCEE
T ss_pred             ccccccccceEEEEeCCccc
Confidence                    389999986543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.56  E-value=2.9e-15  Score=155.24  Aligned_cols=115  Identities=22%  Similarity=0.379  Sum_probs=111.1

Q ss_pred             CcEEEEEeCC-CCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceee
Q 006019           73 GKVVNLNLKD-LCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (664)
Q Consensus        73 ~~v~~l~L~~-~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~  151 (664)
                      .+++.|+|++ |++.|.+|..++++++|++|+|++|.++|.+|..++++++|++|+|++|+++|.+|..++.+++|++|+
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  155 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence            4688999995 999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCcccccCCccccCCC-CCCEeeCCCCcccccccc
Q 006019          152 LDNNDFVGSLSPEIYKLQ-VLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       152 l~~N~~~g~iP~~~~~l~-~L~~l~l~~n~l~g~~p~  187 (664)
                      |++|+++|.+|..+++++ +|++|++++|+++|.+|.
T Consensus       156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~  192 (313)
T 1ogq_A          156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP  192 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG
T ss_pred             CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh
Confidence            999999999999999998 999999999999999987

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.55  E-value=1.8e-14  Score=138.05  Aligned_cols=122  Identities=24%  Similarity=0.283  Sum_probs=106.8

Q ss_pred             CccceeEecC-----------CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecC
Q 006019           63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN  131 (664)
Q Consensus        63 C~w~gv~C~~-----------~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N  131 (664)
                      |.|..+.|++           ..++.|+|++|.|+ .+|..+.++++|+.|+|++|.+++..|..|.++++|++|+|++|
T Consensus        10 C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           10 CLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             eCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            6788899963           26789999999998 78888999999999999999999888888999999999999999


Q ss_pred             cccccCCccccCCcccceeecccCcccccCCccccCCCCCCEeeCCCCcccccc
Q 006019          132 NFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAA  185 (664)
Q Consensus       132 ~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~  185 (664)
                      ++++..|..+..+++|++|+|++|++++..+..+..+++|+.|+|++|.+....
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c  142 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC  142 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence            999877778999999999999999999655556889999999999999998643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.52  E-value=2.9e-14  Score=139.71  Aligned_cols=114  Identities=15%  Similarity=0.161  Sum_probs=108.1

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.+++..+..+.++++|+.|+|++|.+++..|..|..+++|++|+|++|++++..|..+..+++|++|+|
T Consensus        57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  136 (220)
T 2v70_A           57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL  136 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred             CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC
Confidence            58999999999999877778999999999999999999888888999999999999999999988999999999999999


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCccccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p  186 (664)
                      ++|++++..|..+..+++|++|+|++|.|++..+
T Consensus       137 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          137 YDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            9999999999999999999999999999998765

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.51  E-value=5.5e-14  Score=142.31  Aligned_cols=121  Identities=21%  Similarity=0.248  Sum_probs=55.6

Q ss_pred             CCCCccceeEecC-CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCC
Q 006019           60 NNPCSWFGVECSD-GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP  138 (664)
Q Consensus        60 ~~~C~w~gv~C~~-~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip  138 (664)
                      .+.|.|.|+.|+. +.++.+++++++|+ .+|..+.  ++|+.|+|++|.+++..+..|.++++|++|+|++|+++...+
T Consensus         2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~   78 (270)
T 2o6q_A            2 EALCKKDGGVCSCNNNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA   78 (270)
T ss_dssp             CCCBGGGTCSBEEETTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT
T ss_pred             CccCCCCCCCCEeCCCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh
Confidence            3567887777752 23444555555444 2443332  344444444444443333344444444444444444442222


Q ss_pred             ccccCCcccceeecccCcccccCCccccCCCCCCEeeCCCCcccc
Q 006019          139 NDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (664)
Q Consensus       139 ~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g  183 (664)
                      ..+..+++|++|+|++|++++..+..+.++++|++|+|++|++++
T Consensus        79 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  123 (270)
T 2o6q_A           79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS  123 (270)
T ss_dssp             TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC
T ss_pred             hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe
Confidence            223444444444444444443333333444444444444444444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.51  E-value=8e-15  Score=168.94  Aligned_cols=154  Identities=13%  Similarity=0.043  Sum_probs=64.1

Q ss_pred             chHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCccceeEecCCcEEEEEeCCCCccc--------------------
Q 006019           28 LNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEG--------------------   87 (664)
Q Consensus        28 ~~~~~~all~~k~~~~~~~~~~l~~W~~~~~~~~~C~w~gv~C~~~~v~~l~L~~~~l~g--------------------   87 (664)
                      .+.++++|+++..+........-.+|.  ......+.|.++.++.++++.|+|.+|++..                    
T Consensus       130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~  207 (727)
T 4b8c_D          130 VDCTKQALMEMADTLTDSKTAKKQQPT--GDSTPSGTATNSAVSTPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDD  207 (727)
T ss_dssp             --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred             cccchhhhhhhhhhcccccCcccCCCc--CCCCccccCCCceecCCccceEEeeCCCCCcchhhHhhcCccCcccccCcc
Confidence            356778899888766433333334564  2334456787777665444444443322211                    


Q ss_pred             -------cccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecccCccccc
Q 006019           88 -------TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGS  160 (664)
Q Consensus        88 -------~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~N~~~g~  160 (664)
                             ..|..+..++.|+.|+|++|.+. .+|..+.++++|++|+|++|.|+ .||..++++++|++|+|++|+|+ .
T Consensus       208 ~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~  284 (727)
T 4b8c_D          208 DIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-S  284 (727)
T ss_dssp             --------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-S
T ss_pred             ccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-c
Confidence                   11233445555555666655555 45555555555556666655555 55555555555556666555555 5


Q ss_pred             CCccccCCCCCCEeeCCCCcccccccc
Q 006019          161 LSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       161 iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      ||..|++|++|++|+|++|.|+ .||.
T Consensus       285 lp~~~~~l~~L~~L~L~~N~l~-~lp~  310 (727)
T 4b8c_D          285 LPAELGSCFQLKYFYFFDNMVT-TLPW  310 (727)
T ss_dssp             CCSSGGGGTTCSEEECCSSCCC-CCCS
T ss_pred             cChhhcCCCCCCEEECCCCCCC-ccCh
Confidence            5555555555555555555554 4443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.50  E-value=2.6e-14  Score=149.01  Aligned_cols=113  Identities=15%  Similarity=0.142  Sum_probs=102.7

Q ss_pred             CcEEEEEeCCCCccccccccccC---------CCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccC
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQS---------LTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGI  143 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~---------l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~  143 (664)
                      .+++.|+|++|++.|.+|..++.         +++|+.|+|++|.++ .+|..++++++|++|+|++|++++ +|..++.
T Consensus       150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~  227 (328)
T 4fcg_A          150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHH  227 (328)
T ss_dssp             TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGG
T ss_pred             cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhhcc
Confidence            47899999999999999987765         999999999999998 889999999999999999999995 7888999


Q ss_pred             CcccceeecccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          144 NHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       144 ~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      +++|++|+|++|++.+.+|..++++++|++|++++|++.+.+|.
T Consensus       228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~  271 (328)
T 4fcg_A          228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL  271 (328)
T ss_dssp             CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred             CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch
Confidence            99999999999999999999999999999999999999999986

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.49  E-value=2.9e-14  Score=130.48  Aligned_cols=112  Identities=21%  Similarity=0.214  Sum_probs=103.6

Q ss_pred             CcEEEEEeCCCCcc-ccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceee
Q 006019           73 GKVVNLNLKDLCLE-GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (664)
Q Consensus        73 ~~v~~l~L~~~~l~-g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~  151 (664)
                      .+++.|++++|+++ |.+|..+..+++|+.|+|++|.+++.  ..++.+++|++|+|++|++++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            47899999999999 89999999999999999999999976  7899999999999999999998998888899999999


Q ss_pred             cccCcccc-cCCccccCCCCCCEeeCCCCccccccc
Q 006019          152 LDNNDFVG-SLSPEIYKLQVLSESQVDEGQLSSAAK  186 (664)
Q Consensus       152 l~~N~~~g-~iP~~~~~l~~L~~l~l~~n~l~g~~p  186 (664)
                      +++|.+++ ..|..+..+++|++|++++|++++..+
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence            99999997 356889999999999999999997654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.47  E-value=5.9e-14  Score=153.06  Aligned_cols=129  Identities=16%  Similarity=0.217  Sum_probs=115.1

Q ss_pred             CCCCCccce--eEecC----------CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCC-cccCCCCCCCE
Q 006019           59 ENNPCSWFG--VECSD----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIP-EGFGELEELEV  125 (664)
Q Consensus        59 ~~~~C~w~g--v~C~~----------~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip-~~~~~l~~L~~  125 (664)
                      ....|.|.+  |.|+.          .+++.|+|++|.+++..|..+.++++|++|+|++|.+.+.+| ..|.++++|++
T Consensus         4 ~~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~   83 (455)
T 3v47_A            4 GTSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLII   83 (455)
T ss_dssp             ---CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCE
T ss_pred             ccceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCE
Confidence            445677766  88874          368999999999999889999999999999999999998875 56999999999


Q ss_pred             EEeecCcccccCCccccCCcccceeecccCcccccCCcc--ccCCCCCCEeeCCCCcccccccc
Q 006019          126 LDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPE--IYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       126 L~l~~N~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~--~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      |+|++|++++..|..++++++|++|+|++|++++.+|..  +.++++|++|+|++|++++..|.
T Consensus        84 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  147 (455)
T 3v47_A           84 LKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA  147 (455)
T ss_dssp             EECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC
T ss_pred             EeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc
Confidence            999999999988999999999999999999999988776  99999999999999999998775

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.47  E-value=1.7e-13  Score=131.21  Aligned_cols=109  Identities=20%  Similarity=0.295  Sum_probs=100.2

Q ss_pred             EEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCc-ccCCCCCCCEEEeecCcccccCCccccCCcccceeeccc
Q 006019           76 VNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPE-GFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN  154 (664)
Q Consensus        76 ~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~-~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~  154 (664)
                      ..+++++++|+ .+|..+..  +|+.|+|++|.+++..|. .++.+++|++|+|++|++++..|..+..+++|++|+|++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            67899999995 78887654  999999999999977665 489999999999999999999899999999999999999


Q ss_pred             CcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          155 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       155 N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      |++++..|..+.++++|++|+|++|++++.+|.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  120 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG  120 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTT
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH
Confidence            999999998899999999999999999998886

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.47  E-value=5.6e-14  Score=157.08  Aligned_cols=125  Identities=21%  Similarity=0.275  Sum_probs=114.5

Q ss_pred             CCccceeEecC-------------CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEe
Q 006019           62 PCSWFGVECSD-------------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDF  128 (664)
Q Consensus        62 ~C~w~gv~C~~-------------~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l  128 (664)
                      .|.|.|+ |+.             .+++.|+|++|.+++..|..+.++++|++|+|++|.+++..|..|+++++|++|+|
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L   81 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL   81 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence            4999998 862             26899999999999988889999999999999999999988899999999999999


Q ss_pred             ecCcccccCCccccCCcccceeecccCcccc-cCCccccCCCCCCEeeCCCCcccccccc
Q 006019          129 GHNNFSGPLPNDLGINHSLTILLLDNNDFVG-SLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       129 ~~N~l~g~ip~~~~~~~~L~~l~l~~N~~~g-~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      ++|++++..|..++.+++|++|+|++|.+++ .+|..++++++|++|++++|++.+.+|.
T Consensus        82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~  141 (549)
T 2z81_A           82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR  141 (549)
T ss_dssp             TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred             CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH
Confidence            9999998777779999999999999999997 5788999999999999999998777774

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.46  E-value=2.3e-13  Score=136.05  Aligned_cols=115  Identities=23%  Similarity=0.219  Sum_probs=104.3

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.+++..+..+.++++|+.|+|++|.+++..|..|..+++|++|+|++|++++..+..+..+++|+.|+|
T Consensus        59 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  138 (251)
T 3m19_A           59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL  138 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEEC
Confidence            58999999999999987778999999999999999999877788999999999999999999766666789999999999


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      ++|++++..|..+.++++|++|+|++|++++..+.
T Consensus       139 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  173 (251)
T 3m19_A          139 NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG  173 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             cCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence            99999977676899999999999999999976663

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.44  E-value=2.2e-13  Score=154.61  Aligned_cols=114  Identities=18%  Similarity=0.103  Sum_probs=103.2

Q ss_pred             cEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecc
Q 006019           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~  153 (664)
                      .++.|+|++|.|++..+.+|.++++|++|+|++|.|++..|..|.+|++|++|+|++|++++..|..|.++++|++|+|+
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            68999999999997666789999999999999999998778889999999999999999997655678999999999999


Q ss_pred             cCcccccCCccccCCCCCCEeeCCCCcccc-cccc
Q 006019          154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSS-AAKK  187 (664)
Q Consensus       154 ~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g-~~p~  187 (664)
                      +|++++..+..++++++|++|+|++|++++ .+|.
T Consensus       133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~  167 (635)
T 4g8a_A          133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE  167 (635)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred             CCcCCCCChhhhhcCcccCeeccccCccccCCCch
Confidence            999997767779999999999999999986 3554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.44  E-value=1.7e-13  Score=128.06  Aligned_cols=112  Identities=18%  Similarity=0.187  Sum_probs=102.4

Q ss_pred             CcEEEEEeCCCCcc-ccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceee
Q 006019           73 GKVVNLNLKDLCLE-GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (664)
Q Consensus        73 ~~v~~l~L~~~~l~-g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~  151 (664)
                      .+++.|+|++|+++ |.+|..+..+++|+.|+|++|.+++.  ..++.+++|++|+|++|++++.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            57999999999998 89999999999999999999999976  7899999999999999999998998888899999999


Q ss_pred             cccCccccc-CCccccCCCCCCEeeCCCCccccccc
Q 006019          152 LDNNDFVGS-LSPEIYKLQVLSESQVDEGQLSSAAK  186 (664)
Q Consensus       152 l~~N~~~g~-iP~~~~~l~~L~~l~l~~n~l~g~~p  186 (664)
                      |++|++++. .+..+.++++|++|++++|.+++..+
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  137 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND  137 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence            999999863 33789999999999999999997654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.44  E-value=3.9e-13  Score=126.00  Aligned_cols=108  Identities=19%  Similarity=0.223  Sum_probs=94.0

Q ss_pred             EEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecccCc
Q 006019           77 NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNND  156 (664)
Q Consensus        77 ~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~N~  156 (664)
                      .+++++|+|+. +|..+.  ++|+.|+|++|.|++..|..|.++++|++|+|++|++++..|..+..+++|++|+|++|+
T Consensus        13 ~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           13 TVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             EEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            44556677764 777663  899999999999999889999999999999999999997666667899999999999999


Q ss_pred             ccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          157 FVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       157 ~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      |++..|..+.++++|++|+|++|.|++..+.
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~  120 (170)
T 3g39_A           90 LKSIPRGAFDNLKSLTHIWLLNNPWDCACSD  120 (170)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred             cCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence            9976666799999999999999999987664

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.43  E-value=3.2e-13  Score=132.20  Aligned_cols=112  Identities=16%  Similarity=0.205  Sum_probs=104.0

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.+++..|..+.++++|+.|+|++|.|++..+..|..+++|++|+|++|++++..|..+..+++|++|+|
T Consensus        56 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  135 (220)
T 2v9t_B           56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSL  135 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEEC
Confidence            58999999999999988999999999999999999999655556799999999999999999988999999999999999


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  184 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~  184 (664)
                      ++|++++..+..+..+++|++|+|++|.|...
T Consensus       136 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          136 YDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            99999988887899999999999999999864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.42  E-value=2.1e-13  Score=152.35  Aligned_cols=109  Identities=22%  Similarity=0.221  Sum_probs=103.2

Q ss_pred             cEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecc
Q 006019           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~  153 (664)
                      .++.|+|++|.|++ +|. +++|++|+.|+|++|.|+ .+|..+++|++|+.|+|++|++++ +| .++.+++|+.|+|+
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            57889999999997 776 999999999999999999 899999999999999999999997 78 89999999999999


Q ss_pred             cCcccccC-CccccCCCCCCEeeCCCCcccccccc
Q 006019          154 NNDFVGSL-SPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       154 ~N~~~g~i-P~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      +|++++.+ |..++++++|+.|+|++|+|++.+|.
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            99999987 99999999999999999999998775

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.42  E-value=5.3e-13  Score=125.55  Aligned_cols=108  Identities=19%  Similarity=0.245  Sum_probs=95.1

Q ss_pred             EEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecccC
Q 006019           76 VNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN  155 (664)
Q Consensus        76 ~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~N  155 (664)
                      +.+++++|+|+ .+|..+.  ++|+.|+|++|.|++..|..|+++++|++|+|++|+|++..+..+..+++|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            56888899885 7888775  89999999999999998999999999999999999999754445689999999999999


Q ss_pred             cccccCCccccCCCCCCEeeCCCCccccccc
Q 006019          156 DFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (664)
Q Consensus       156 ~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p  186 (664)
                      ++++..+..+.++++|++|+|++|.|....+
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            9996555569999999999999999997654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.42  E-value=7.3e-13  Score=134.13  Aligned_cols=112  Identities=23%  Similarity=0.232  Sum_probs=70.8

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.+++ + +.+..+++|++|+|++|.+++..|..++++++|++|+|++|++++..|..++.+++|++|+|
T Consensus        63 ~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  140 (272)
T 3rfs_A           63 PNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL  140 (272)
T ss_dssp             TTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence            356666666666665 2 35666666666666666666555555666666666666666666555555666666666666


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCccccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p  186 (664)
                      ++|++++..|..+.++++|++|++++|++++..+
T Consensus       141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  174 (272)
T 3rfs_A          141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE  174 (272)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence            6666665555555666666666666666665444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.41  E-value=6.3e-13  Score=128.80  Aligned_cols=115  Identities=16%  Similarity=0.126  Sum_probs=102.9

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.+++..+..+..+++|++|+|++|.+++..+..+.++++|++|+|++|++++..+..+..+++|++|+|
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  131 (208)
T 2o6s_A           52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL  131 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEEC
Confidence            47999999999999655556799999999999999999776777899999999999999999766666899999999999


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      ++|++++..+..+.++++|++|++++|.+.+..|.
T Consensus       132 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  166 (208)
T 2o6s_A          132 YQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  166 (208)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTT
T ss_pred             CCCccceeCHHHhccCCCccEEEecCCCeecCCCC
Confidence            99999976666689999999999999999998775

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.41  E-value=6.1e-13  Score=134.72  Aligned_cols=115  Identities=22%  Similarity=0.228  Sum_probs=103.5

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.+++..+..+.++++|+.|+|++|.+++..|..++.+++|++|+|++|++++..|..++.+++|+.|+|
T Consensus        85 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  164 (272)
T 3rfs_A           85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL  164 (272)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence            57999999999999877767899999999999999999877878899999999999999999776667889999999999


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      ++|++++..|..+.++++|++|++++|++++..|.
T Consensus       165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  199 (272)
T 3rfs_A          165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG  199 (272)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             CCCCcCccCHHHhcCCccCCEEECCCCcCCccCHH
Confidence            99999977777789999999999999999987664

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.41  E-value=1e-13  Score=157.84  Aligned_cols=125  Identities=14%  Similarity=0.179  Sum_probs=115.1

Q ss_pred             CCccceeEec----CCcEEEEEeCCCCcccc-----------------cccccc--CCCCCCEEEccCCcccccCCcccC
Q 006019           62 PCSWFGVECS----DGKVVNLNLKDLCLEGT-----------------LAPEIQ--SLTHIKSIILRNNSFSGIIPEGFG  118 (664)
Q Consensus        62 ~C~w~gv~C~----~~~v~~l~L~~~~l~g~-----------------ip~~~~--~l~~L~~l~L~~N~l~g~ip~~~~  118 (664)
                      .+..+|+ ..    -.+++.|+|++|.|+|.                 +|..++  ++++|++|+|++|.+.|.+|..++
T Consensus       192 ~n~l~~i-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~  270 (636)
T 4eco_A          192 SNNITFV-SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK  270 (636)
T ss_dssp             SCEEEEE-CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred             cCCCccC-CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence            3466673 32    25899999999999997                 999999  999999999999999999999999


Q ss_pred             CCCCCCEEEeecCc-ccc-cCCccccCC------cccceeecccCcccccCCc--cccCCCCCCEeeCCCCccccccccc
Q 006019          119 ELEELEVLDFGHNN-FSG-PLPNDLGIN------HSLTILLLDNNDFVGSLSP--EIYKLQVLSESQVDEGQLSSAAKKE  188 (664)
Q Consensus       119 ~l~~L~~L~l~~N~-l~g-~ip~~~~~~------~~L~~l~l~~N~~~g~iP~--~~~~l~~L~~l~l~~n~l~g~~p~~  188 (664)
                      ++++|++|+|++|+ ++| .+|..++.+      ++|++|+|++|+++ .+|.  .++++++|++|++++|+++|.+|..
T Consensus       271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~  349 (636)
T 4eco_A          271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAF  349 (636)
T ss_dssp             TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCC
T ss_pred             cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhh
Confidence            99999999999999 999 999999887      99999999999999 9999  9999999999999999999999953

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.41  E-value=5.9e-13  Score=150.67  Aligned_cols=128  Identities=19%  Similarity=0.155  Sum_probs=112.7

Q ss_pred             CCCCccc----eeEecC-----------CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCC
Q 006019           60 NNPCSWF----GVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELE  124 (664)
Q Consensus        60 ~~~C~w~----gv~C~~-----------~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~  124 (664)
                      .+||.|.    .|.|+.           .+++.|+|++|.+++..+..+.++++|++|+|++|.+++..|..|+++++|+
T Consensus         4 ~~~c~~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~   83 (606)
T 3vq2_A            4 LNPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS   83 (606)
T ss_dssp             --CCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred             CCCceecCCCCceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcC
Confidence            3567663    577852           3789999999999988888899999999999999999988898999999999


Q ss_pred             EEEeecCcccccCCccccCCcccceeecccCcccccCCccccCCCCCCEeeCCCCcccc-cccc
Q 006019          125 VLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS-AAKK  187 (664)
Q Consensus       125 ~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g-~~p~  187 (664)
                      +|+|++|++++..|..++++++|++|+|++|++++..|..++++++|++|++++|++++ .+|.
T Consensus        84 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~  147 (606)
T 3vq2_A           84 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA  147 (606)
T ss_dssp             EEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred             EeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH
Confidence            99999999998889999999999999999999998877889999999999999999986 6676

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.40  E-value=7.9e-13  Score=130.28  Aligned_cols=114  Identities=20%  Similarity=0.191  Sum_probs=102.9

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.|++..+..+..+++|+.|+|++|.|++..+..|..+++|++|+|++|+++ .+|..+..+++|++|+|
T Consensus        64 ~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L  142 (229)
T 3e6j_A           64 INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLAL  142 (229)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEEC
T ss_pred             cCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEEC
Confidence            58999999999997544455799999999999999999877777899999999999999999 89999999999999999


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      ++|++++..+..+..+++|+.|+|++|.+++..+.
T Consensus       143 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  177 (229)
T 3e6j_A          143 DQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD  177 (229)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred             CCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence            99999976667789999999999999999987663

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.40  E-value=1.1e-12  Score=132.99  Aligned_cols=114  Identities=18%  Similarity=0.103  Sum_probs=101.2

Q ss_pred             cEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecc
Q 006019           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~  153 (664)
                      +++.|+|++|++++..+..+.++++|+.|+|++|.+++..+..+.++++|++|+|++|++++..|..+..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            58899999999997666689999999999999999998777789999999999999999998877889999999999999


Q ss_pred             cCcccccCCccccCCCCCCEeeCCCCcccc-cccc
Q 006019          154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSS-AAKK  187 (664)
Q Consensus       154 ~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g-~~p~  187 (664)
                      +|++++..+..+.++++|++|++++|++++ .+|.
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~  143 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE  143 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCch
Confidence            999998777789999999999999999987 3564

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.39  E-value=7.4e-13  Score=139.94  Aligned_cols=122  Identities=24%  Similarity=0.239  Sum_probs=110.4

Q ss_pred             CccceeEecC-----------CcEEEEEeCCCCcccccccccc-CCCCCCEEEccCCcccccCCcccCCCCCCCEEEeec
Q 006019           63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQ-SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH  130 (664)
Q Consensus        63 C~w~gv~C~~-----------~~v~~l~L~~~~l~g~ip~~~~-~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~  130 (664)
                      |.|.-+.|..           ..++.|+|++|.|++..+..+. ++++|+.|+|++|.|++..|..|.++++|++|+|++
T Consensus        18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             EETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            6788899963           2478999999999987666676 999999999999999988888899999999999999


Q ss_pred             CcccccCCccccCCcccceeecccCcccccCCccccCCCCCCEeeCCCCccccc
Q 006019          131 NNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  184 (664)
Q Consensus       131 N~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~  184 (664)
                      |++++..+..+..+++|+.|+|++|++++..|..+.++++|+.|+|++|++++.
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l  151 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRF  151 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCee
Confidence            999987777799999999999999999988899999999999999999999974

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.38  E-value=1.3e-12  Score=125.00  Aligned_cols=107  Identities=17%  Similarity=0.262  Sum_probs=97.2

Q ss_pred             EEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecccC
Q 006019           76 VNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN  155 (664)
Q Consensus        76 ~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~N  155 (664)
                      ..+++++++++ .+|..+.  ++|+.|+|++|.|+ .+|..|.++++|+.|+|++|++++..|..|.++++|+.|+|++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            46889999988 6887654  68999999999998 78999999999999999999999877788999999999999999


Q ss_pred             cccccCCccccCCCCCCEeeCCCCccccccc
Q 006019          156 DFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (664)
Q Consensus       156 ~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p  186 (664)
                      ++++..|..+.++++|++|+|++|++++..+
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~  119 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPE  119 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeCh
Confidence            9998888889999999999999999996544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.38  E-value=1e-12  Score=138.01  Aligned_cols=109  Identities=17%  Similarity=0.207  Sum_probs=95.1

Q ss_pred             CccceeEecCCcEEEEEeCCC-CccccccccccCCCCCCEEEccC-CcccccCCcccCCCCCCCEEEeecCcccccCCcc
Q 006019           63 CSWFGVECSDGKVVNLNLKDL-CLEGTLAPEIQSLTHIKSIILRN-NSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND  140 (664)
Q Consensus        63 C~w~gv~C~~~~v~~l~L~~~-~l~g~ip~~~~~l~~L~~l~L~~-N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~  140 (664)
                      |.|..|.|+          ++ +|++ ||. |..+++|+.|+|++ |.|++..|..|++|++|+.|+|++|+|+|..|..
T Consensus         8 C~~~~v~~~----------~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~   75 (347)
T 2ifg_A            8 HGSSGLRCT----------RDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA   75 (347)
T ss_dssp             SSSSCEECC----------SSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTG
T ss_pred             ccCCEEEcC----------CCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHH
Confidence            888888885          34 6764 888 99999999999996 9999888889999999999999999999988889


Q ss_pred             ccCCcccceeecccCcccccCCccccCCCCCCEeeCCCCccccc
Q 006019          141 LGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  184 (664)
Q Consensus       141 ~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~  184 (664)
                      |+++++|+.|+|++|+|++ +|+.+.....|+.|+|++|.|...
T Consensus        76 ~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           76 FHFTPRLSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPLHCS  118 (347)
T ss_dssp             GGSCSCCCEEECCSSCCSC-CCSTTTCSCCCCEEECCSSCCCCC
T ss_pred             hcCCcCCCEEeCCCCccce-eCHHHcccCCceEEEeeCCCccCC
Confidence            9999999999999999995 555544444499999999999864

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.37  E-value=1.4e-12  Score=147.34  Aligned_cols=136  Identities=15%  Similarity=0.128  Sum_probs=99.1

Q ss_pred             CCCCCCCCCCCCCCCc----cceeEecC------------------CcEEEEEeCCCCccccccccccCCCCCCEEEccC
Q 006019           49 ALTSWRSCDTENNPCS----WFGVECSD------------------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRN  106 (664)
Q Consensus        49 ~l~~W~~~~~~~~~C~----w~gv~C~~------------------~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~  106 (664)
                      .+.+|.   .+.+||.    |.++.|+.                  .++..++++++.++...+..+.++++|+.|+|++
T Consensus         8 ~l~~~~---~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~   84 (597)
T 3oja_B            8 NVKPRQ---PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND   84 (597)
T ss_dssp             ---CCC---SEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTT
T ss_pred             cccCCC---CCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCC
Confidence            456775   4556663    76666541                  2457778888877653333467788888888888


Q ss_pred             CcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecccCcccccCCccccCCCCCCEeeCCCCccccccc
Q 006019          107 NSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (664)
Q Consensus       107 N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p  186 (664)
                      |.+++..|..|+.+++|++|+|++|.+++..|..++.+++|++|+|++|.+++..|..++++++|++|+|++|++++..|
T Consensus        85 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~  164 (597)
T 3oja_B           85 LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED  164 (597)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred             CCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh
Confidence            88888777788888888888888888888777777888888888888888884434445788888888888888887766


Q ss_pred             c
Q 006019          187 K  187 (664)
Q Consensus       187 ~  187 (664)
                      .
T Consensus       165 ~  165 (597)
T 3oja_B          165 D  165 (597)
T ss_dssp             T
T ss_pred             h
Confidence            4

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.35  E-value=1e-12  Score=138.30  Aligned_cols=125  Identities=23%  Similarity=0.323  Sum_probs=105.0

Q ss_pred             CCCCCccceeEecC-------------CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCE
Q 006019           59 ENNPCSWFGVECSD-------------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEV  125 (664)
Q Consensus        59 ~~~~C~w~gv~C~~-------------~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~  125 (664)
                      ...+|.|.|+ |+.             .+++.|+|++|++++..+..+.++++|+.|+|++|.+++..|..|.++++|++
T Consensus        26 ~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (353)
T 2z80_A           26 ASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH  104 (353)
T ss_dssp             -CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             cCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence            3556899987 651             26899999999999755558999999999999999999888888999999999


Q ss_pred             EEeecCcccccCCcc-ccCCcccceeecccCcccccCCc--cccCCCCCCEeeCCCCccccccc
Q 006019          126 LDFGHNNFSGPLPND-LGINHSLTILLLDNNDFVGSLSP--EIYKLQVLSESQVDEGQLSSAAK  186 (664)
Q Consensus       126 L~l~~N~l~g~ip~~-~~~~~~L~~l~l~~N~~~g~iP~--~~~~l~~L~~l~l~~n~l~g~~p  186 (664)
                      |+|++|++++ +|.. ++.+++|++|+|++|+++ .+|.  .+.++++|++|++++|+..+.++
T Consensus       105 L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~  166 (353)
T 2z80_A          105 LDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQ  166 (353)
T ss_dssp             EECCSSCCSS-CCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred             EECCCCcCCc-CCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccC
Confidence            9999999996 5554 889999999999999998 5665  78899999999999996444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.35  E-value=2.7e-12  Score=140.80  Aligned_cols=124  Identities=21%  Similarity=0.187  Sum_probs=112.6

Q ss_pred             ccceeEecC-----------CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCc
Q 006019           64 SWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN  132 (664)
Q Consensus        64 ~w~gv~C~~-----------~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~  132 (664)
                      .|..|.|..           .+++.|+|++|++++..|..+.++++|+.|+|++|.+++..|..|.++++|++|+|++|+
T Consensus        12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            377899963           267899999999999888899999999999999999999999999999999999999999


Q ss_pred             ccccCCccccCCcccceeecccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          133 FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       133 l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      +++..+..+.++++|++|+|++|++++..|..+.++++|++|++++|++++..|.
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  146 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR  146 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTT
T ss_pred             CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChh
Confidence            9965555688999999999999999999999999999999999999999987664

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.34  E-value=3.4e-12  Score=130.02  Aligned_cols=114  Identities=18%  Similarity=0.149  Sum_probs=103.8

Q ss_pred             cEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCc-ccccCCccccCCcccceeec
Q 006019           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN-FSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~-l~g~ip~~~~~~~~L~~l~l  152 (664)
                      +++.|+|++|.+++..+..+.++++|+.|+|++|.+++..|..|..+++|++|+|++|. ++...|..+..+++|++|+|
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l  112 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence            68999999999998776789999999999999999998889999999999999999998 77655888999999999999


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      ++|++++..|..+.++++|++|++++|++++..+.
T Consensus       113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  147 (285)
T 1ozn_A          113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD  147 (285)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh
Confidence            99999988888899999999999999999875553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.34  E-value=1.9e-12  Score=141.03  Aligned_cols=114  Identities=20%  Similarity=0.183  Sum_probs=104.2

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.+++.+|..+..+++|+.|+|++|.+++..|..|+++++|++|+|++|++++..|..++.+++|++|+|
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            47899999999999988888999999999999999999888989999999999999999999888888899999999999


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCccccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p  186 (664)
                      ++|++++..|..+.++++|++|+|++|++++..+
T Consensus       355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  388 (455)
T 3v47_A          355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD  388 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CCCcccccChhhccccccccEEECCCCccccCCH
Confidence            9999998889999999999999999999997544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.34  E-value=2.5e-12  Score=132.46  Aligned_cols=114  Identities=18%  Similarity=0.179  Sum_probs=92.3

Q ss_pred             CcEEEEEeCCCCcccccc-ccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccc-cCCccccCCccccee
Q 006019           73 GKVVNLNLKDLCLEGTLA-PEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG-PLPNDLGINHSLTIL  150 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip-~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g-~ip~~~~~~~~L~~l  150 (664)
                      .+++.|+|++|.+++..+ ..+..+++|+.|+|++|.+.+..|..+..+++|++|+|++|.+++ .+|..+..+++|+.|
T Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  180 (306)
T 2z66_A          101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL  180 (306)
T ss_dssp             TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence            467888888888876544 467888888888888888888888888888888888888888887 577788888888888


Q ss_pred             ecccCcccccCCccccCCCCCCEeeCCCCccccccc
Q 006019          151 LLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (664)
Q Consensus       151 ~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p  186 (664)
                      +|++|++++..|..+.++++|++|+|++|++++..+
T Consensus       181 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  216 (306)
T 2z66_A          181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT  216 (306)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS
T ss_pred             ECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh
Confidence            888888888778888888888888888888876544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.34  E-value=1.3e-12  Score=143.67  Aligned_cols=30  Identities=7%  Similarity=-0.043  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHhccCCCcccceEEEEecCC
Q 006019          415 EVQFRKKIDTLSKVNHKNFVNLIGFCEEEE  444 (664)
Q Consensus       415 ~~~f~~E~~~l~~l~H~niv~l~g~~~~~~  444 (664)
                      .++|..|++.+++++|+|+|+++|||....
T Consensus       323 ~~eF~~Eve~L~~i~HrNLV~L~gyC~s~~  352 (487)
T 3oja_A          323 SETERLECERENQARQREIDALKEQYRTVI  352 (487)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHHHhcccccchhhHHHHhcChH
Confidence            467999999999999999999999997654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.34  E-value=3.6e-12  Score=130.28  Aligned_cols=108  Identities=20%  Similarity=0.197  Sum_probs=70.4

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.+++ ++.. +.+++|+.|+|++|.++ .+|..+..+++|++|+|++|++++..|..+..+++|++|+|
T Consensus        55 ~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L  131 (290)
T 1p9a_G           55 TRLTQLNLDRAELTK-LQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL  131 (290)
T ss_dssp             TTCCEEECTTSCCCE-EECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCc-ccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEEC
Confidence            466777777777664 3322 66667777777777765 56666666677777777777776555555666677777777


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCcccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g  183 (664)
                      ++|++++..|..+.++++|+.|+|++|++++
T Consensus       132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  162 (290)
T 1p9a_G          132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (290)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             CCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence            7777765444445666677777777776664

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.33  E-value=5.4e-13  Score=155.39  Aligned_cols=124  Identities=15%  Similarity=0.124  Sum_probs=112.2

Q ss_pred             CccceeEec---CCcEEEEEeCCCCccc-----------------ccccccc--CCCCCCEEEccCCcccccCCcccCCC
Q 006019           63 CSWFGVECS---DGKVVNLNLKDLCLEG-----------------TLAPEIQ--SLTHIKSIILRNNSFSGIIPEGFGEL  120 (664)
Q Consensus        63 C~w~gv~C~---~~~v~~l~L~~~~l~g-----------------~ip~~~~--~l~~L~~l~L~~N~l~g~ip~~~~~l  120 (664)
                      |...|+--.   -.+++.|+|++|.|+|                 .+|..++  +|++|+.|+|++|.+.|.+|..|++|
T Consensus       435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L  514 (876)
T 4ecn_A          435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL  514 (876)
T ss_dssp             CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred             CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence            456664221   2589999999999999                 5999988  99999999999999999999999999


Q ss_pred             CCCCEEEeecCc-ccc-cCCccccCCc-------ccceeecccCcccccCCc--cccCCCCCCEeeCCCCccccccccc
Q 006019          121 EELEVLDFGHNN-FSG-PLPNDLGINH-------SLTILLLDNNDFVGSLSP--EIYKLQVLSESQVDEGQLSSAAKKE  188 (664)
Q Consensus       121 ~~L~~L~l~~N~-l~g-~ip~~~~~~~-------~L~~l~l~~N~~~g~iP~--~~~~l~~L~~l~l~~n~l~g~~p~~  188 (664)
                      ++|+.|+|++|+ ++| .+|..++.++       +|+.|+|++|+++ .||.  .++++++|+.|+|++|+++ .+|..
T Consensus       515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~  591 (876)
T 4ecn_A          515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAF  591 (876)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCC
T ss_pred             CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhh
Confidence            999999999998 999 9999888776       9999999999999 9999  9999999999999999999 88853

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.32  E-value=3.7e-12  Score=129.80  Aligned_cols=115  Identities=17%  Similarity=0.201  Sum_probs=97.7

Q ss_pred             CcEEEEEeCCCC-ccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceee
Q 006019           73 GKVVNLNLKDLC-LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (664)
Q Consensus        73 ~~v~~l~L~~~~-l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~  151 (664)
                      .+++.|+|++|. +....|..+..+++|+.|+|++|.+++..|..+.++++|++|+|++|++++..+..++.+++|++|+
T Consensus        80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  159 (285)
T 1ozn_A           80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF  159 (285)
T ss_dssp             TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence            478899999997 6655577788999999999999999988888888999999999999999876666688899999999


Q ss_pred             cccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       152 l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      |++|++++..+..+.++++|++|++++|++++..|.
T Consensus       160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  195 (285)
T 1ozn_A          160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH  195 (285)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             CCCCcccccCHHHhcCccccCEEECCCCcccccCHh
Confidence            999999866666788899999999999999887665

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.32  E-value=1.7e-12  Score=144.49  Aligned_cols=118  Identities=27%  Similarity=0.357  Sum_probs=102.0

Q ss_pred             CCCCCCCCCCCCC-----cccee-EecCCcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCC
Q 006019           51 TSWRSCDTENNPC-----SWFGV-ECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELE  124 (664)
Q Consensus        51 ~~W~~~~~~~~~C-----~w~gv-~C~~~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~  124 (664)
                      .+|.   .+.++|     .|.|+ .|..++++.|+|++|+|++ +|..+.  ++|+.|+|++|.|+ .||   ..+++|+
T Consensus        34 ~~W~---~~~~~~~~~~~~~~~l~~C~~~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~  103 (571)
T 3cvr_A           34 DKWE---KQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLE  103 (571)
T ss_dssp             HHHH---TTCCTTCCHHHHHHHHHHHHHTTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCC
T ss_pred             HHHh---ccCCccccccchhhhccccccCCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCC
Confidence            3564   345678     79999 7987899999999999997 888774  89999999999998 788   4578999


Q ss_pred             EEEeecCcccccCCccccCCcccceeecccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          125 VLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       125 ~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      +|+|++|+|++ +|. +..  +|+.|+|++|++++ ||.   .+++|+.|+|++|++++ +|.
T Consensus       104 ~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~  157 (571)
T 3cvr_A          104 YLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE  157 (571)
T ss_dssp             EEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC
T ss_pred             EEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC
Confidence            99999999998 888 655  89999999999998 887   68999999999999997 665

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.32  E-value=7.5e-12  Score=126.49  Aligned_cols=115  Identities=22%  Similarity=0.223  Sum_probs=94.7

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.++...+..+.++++|+.|+|++|.+++..+..+..+++|++|+|++|++++..|..+..+++|++|+|
T Consensus        61 ~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  140 (270)
T 2o6q_A           61 TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL  140 (270)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEEC
Confidence            47889999999988543344688999999999999998766677888999999999999999877777888999999999


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      ++|++++..+..+.++++|++|+|++|++++..+.
T Consensus       141 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  175 (270)
T 2o6q_A          141 GYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG  175 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             CCCcCCccCHhHccCCcccceeEecCCcCcEeChh
Confidence            99999865555688899999999999998875543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.31  E-value=4.4e-12  Score=128.58  Aligned_cols=115  Identities=19%  Similarity=0.199  Sum_probs=106.0

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.+++..+..+.++++|+.|+|++|.+++..|..+.++++|++|++++|++++..+..++.+++|++|+|
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  131 (276)
T 2z62_A           52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV  131 (276)
T ss_dssp             TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred             cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEEC
Confidence            57999999999999777778999999999999999999988899999999999999999999877768999999999999


Q ss_pred             ccCcccc-cCCccccCCCCCCEeeCCCCcccccccc
Q 006019          153 DNNDFVG-SLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       153 ~~N~~~g-~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      ++|++++ .+|..+.++++|++|++++|++++..+.
T Consensus       132 ~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~  167 (276)
T 2z62_A          132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  167 (276)
T ss_dssp             CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             cCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence            9999987 5899999999999999999999986553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.31  E-value=2.4e-12  Score=151.42  Aligned_cols=124  Identities=19%  Similarity=0.163  Sum_probs=86.2

Q ss_pred             CccceeEecCCcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccC-CcccCCCCCCCEEEeecCcccccCCccc
Q 006019           63 CSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGII-PEGFGELEELEVLDFGHNNFSGPLPNDL  141 (664)
Q Consensus        63 C~w~gv~C~~~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~i-p~~~~~l~~L~~L~l~~N~l~g~ip~~~  141 (664)
                      |+|+.|-+-..+++.|+|++|.+++..|..+.++++|++|+|++|.+.+.| |..|++|++|++|+|++|++++..|..+
T Consensus        14 ~~L~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~   93 (844)
T 3j0a_A           14 CNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF   93 (844)
T ss_dssp             CCSSCCCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS
T ss_pred             CCCCCCCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc
Confidence            345555553356777777777777766667777777777777777666666 5567777777777777777776667777


Q ss_pred             cCCcccceeecccCcccccCCcc--ccCCCCCCEeeCCCCccccccc
Q 006019          142 GINHSLTILLLDNNDFVGSLSPE--IYKLQVLSESQVDEGQLSSAAK  186 (664)
Q Consensus       142 ~~~~~L~~l~l~~N~~~g~iP~~--~~~l~~L~~l~l~~n~l~g~~p  186 (664)
                      +++++|++|+|++|++++.+|..  +.++++|++|+|++|++++..|
T Consensus        94 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~  140 (844)
T 3j0a_A           94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL  140 (844)
T ss_dssp             CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC
T ss_pred             cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc
Confidence            77777777777777777766655  6677777777777777766544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.31  E-value=4.3e-12  Score=121.86  Aligned_cols=111  Identities=16%  Similarity=0.164  Sum_probs=89.1

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|+++ .+| .+..+++|+.|+|++|.+.  .++.+..+++|++|+|++|++++..|..++.+++|++|+|
T Consensus        44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            36788888888887 566 6888888888888888554  3457888888888888888888877888888888888888


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      ++|++++..|..+.++++|++|++++|++.+.+|.
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~  154 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP  154 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh
Confidence            88888888888888888888888888885555554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.31  E-value=8.8e-12  Score=135.85  Aligned_cols=123  Identities=20%  Similarity=0.188  Sum_probs=110.0

Q ss_pred             cceeEecC-----------CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcc
Q 006019           65 WFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF  133 (664)
Q Consensus        65 w~gv~C~~-----------~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l  133 (664)
                      |..|.|.+           .+++.|+|++|++++..|..+.++++|+.|+|++|.+++..|..|.++++|++|+|++|++
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  135 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL  135 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence            67888963           3689999999999998888999999999999999999998889999999999999999999


Q ss_pred             cccCCccccCCcccceeecccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          134 SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       134 ~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      ++..+..+..+++|++|+|++|++++..+..+.++++|++|++++|+..+.+|.
T Consensus       136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~  189 (452)
T 3zyi_A          136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE  189 (452)
T ss_dssp             SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred             CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh
Confidence            976666789999999999999999976666888999999999999777777765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.30  E-value=8.8e-12  Score=135.33  Aligned_cols=123  Identities=20%  Similarity=0.176  Sum_probs=109.7

Q ss_pred             cceeEecC-----------CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcc
Q 006019           65 WFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF  133 (664)
Q Consensus        65 w~gv~C~~-----------~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l  133 (664)
                      |..|.|..           ..++.|+|++|++++..+..+.++++|+.|+|++|.+++..|..|.++++|++|+|++|++
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l  124 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL  124 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence            67899963           3678999999999988888999999999999999999988888999999999999999999


Q ss_pred             cccCCccccCCcccceeecccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          134 SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       134 ~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      ++..+..+..+++|++|+|++|.+++..+..+.++++|++|+|++|+..+.++.
T Consensus       125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~  178 (440)
T 3zyj_A          125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE  178 (440)
T ss_dssp             SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred             CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence            966556799999999999999999977777899999999999999777777765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.30  E-value=5.2e-12  Score=142.88  Aligned_cols=125  Identities=14%  Similarity=0.060  Sum_probs=113.3

Q ss_pred             cceeEecC-----------CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcc
Q 006019           65 WFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF  133 (664)
Q Consensus        65 w~gv~C~~-----------~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l  133 (664)
                      +.-|.|..           ..++.|+|++|.+++..|..++++++|++|+|++|.+.+..|..|+++++|++|+|++|++
T Consensus        14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l   93 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL   93 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence            44577852           3689999999999988888999999999999999999999999999999999999999999


Q ss_pred             cccCCccccCCcccceeecccCcccccCCccccCCCCCCEeeCCCCcccc-cccccc
Q 006019          134 SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS-AAKKEQ  189 (664)
Q Consensus       134 ~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g-~~p~~~  189 (664)
                      ++..|..++.+++|++|+|++|++++..|..++++++|++|++++|++++ .+|...
T Consensus        94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  150 (606)
T 3t6q_A           94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF  150 (606)
T ss_dssp             SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTC
T ss_pred             cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccccc
Confidence            99999999999999999999999998778889999999999999999998 456543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.30  E-value=5e-12  Score=130.18  Aligned_cols=115  Identities=18%  Similarity=0.282  Sum_probs=107.0

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccc-cCCcccCCCCCCCEEEeecCcccccCCccccCCcccceee
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSG-IIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g-~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~  151 (664)
                      .+++.|+|++|.+.+..+..+..+++|+.|+|++|.+.+ .+|..+..+++|++|+|++|++++..|..+..+++|+.|+
T Consensus       126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  205 (306)
T 2z66_A          126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN  205 (306)
T ss_dssp             TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence            478999999999999888889999999999999999998 6899999999999999999999998888999999999999


Q ss_pred             cccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       152 l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      |++|++++..+..+..+++|++|++++|++++.+|.
T Consensus       206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  241 (306)
T 2z66_A          206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ  241 (306)
T ss_dssp             CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred             CCCCccCccChhhccCcccCCEeECCCCCCcccCHH
Confidence            999999987777899999999999999999998875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.30  E-value=4.9e-12  Score=125.34  Aligned_cols=112  Identities=14%  Similarity=0.157  Sum_probs=98.8

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCc-ccccCCcccCCCCCCCEEEeec-CcccccCCccccCCccccee
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNS-FSGIIPEGFGELEELEVLDFGH-NNFSGPLPNDLGINHSLTIL  150 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~-l~g~ip~~~~~l~~L~~L~l~~-N~l~g~ip~~~~~~~~L~~l  150 (664)
                      ..++.|+|++|++++..+..+.++++|+.|+|++|. +++..+..|.++++|++|+|++ |++++..|..+..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            478999999999997666689999999999999997 8766666899999999999999 99997666788999999999


Q ss_pred             ecccCcccccCCccccCCCCCC---EeeCCCC-ccccccc
Q 006019          151 LLDNNDFVGSLSPEIYKLQVLS---ESQVDEG-QLSSAAK  186 (664)
Q Consensus       151 ~l~~N~~~g~iP~~~~~l~~L~---~l~l~~n-~l~g~~p  186 (664)
                      ++++|++++ +|. +..+++|+   +|++++| ++++..+
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~  148 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPV  148 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECT
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCc
Confidence            999999997 887 88999998   9999999 8876544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.29  E-value=4.2e-12  Score=121.90  Aligned_cols=108  Identities=11%  Similarity=0.193  Sum_probs=99.1

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.+.  .++.+..+++|+.|+|++|.+++..|..++.+++|++|+|++|++++..|..++.+++|++|+|
T Consensus        66 ~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L  143 (197)
T 4ezg_A           66 HNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL  143 (197)
T ss_dssp             TTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred             CCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence            47999999999654  4568999999999999999999989999999999999999999999989999999999999999


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCcccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g  183 (664)
                      ++|.+.+.+| .+.++++|++|++++|++++
T Consensus       144 ~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          144 SYNGAITDIM-PLKTLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             CSCTBCCCCG-GGGGCSSCCEEECTTBCCCC
T ss_pred             cCCCCccccH-hhcCCCCCCEEECCCCCCcC
Confidence            9999666787 69999999999999999987

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.29  E-value=5.7e-12  Score=142.59  Aligned_cols=115  Identities=18%  Similarity=0.195  Sum_probs=108.4

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.+++..|..+.++++|++|+|++|.+++..|..|+++++|++|+|++|++++..|..++.+++|++|+|
T Consensus        56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  135 (606)
T 3vq2_A           56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV  135 (606)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred             ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence            58999999999999888888999999999999999999988999999999999999999999877788999999999999


Q ss_pred             ccCcccc-cCCccccCCCCCCEeeCCCCcccccccc
Q 006019          153 DNNDFVG-SLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       153 ~~N~~~g-~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      ++|.+++ .+|..++++++|++|++++|++++..|.
T Consensus       136 ~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~  171 (606)
T 3vq2_A          136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN  171 (606)
T ss_dssp             CSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred             CCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence            9999986 7899999999999999999999987765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.29  E-value=1.3e-12  Score=135.11  Aligned_cols=111  Identities=14%  Similarity=0.231  Sum_probs=93.6

Q ss_pred             cEEEEEeCCCCc-ccccccccc-------CCCCCCEEEccCCcccccCCccc--CCCCCCCEEEeecCcccccCCccccC
Q 006019           74 KVVNLNLKDLCL-EGTLAPEIQ-------SLTHIKSIILRNNSFSGIIPEGF--GELEELEVLDFGHNNFSGPLPNDLGI  143 (664)
Q Consensus        74 ~v~~l~L~~~~l-~g~ip~~~~-------~l~~L~~l~L~~N~l~g~ip~~~--~~l~~L~~L~l~~N~l~g~ip~~~~~  143 (664)
                      .++.|+|++|.+ .+.+|..+.       ++++|+.|+|++|.++|.+|..+  +.+++|++|+|++|++++. |..++.
T Consensus        64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~  142 (312)
T 1wwl_A           64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAE  142 (312)
T ss_dssp             HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHH
T ss_pred             HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHH
Confidence            477888888888 567777766       78899999999999998888876  8888999999999999876 877777


Q ss_pred             C-----cccceeecccCcccccCCccccCCCCCCEeeCCCCcccccc
Q 006019          144 N-----HSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAA  185 (664)
Q Consensus       144 ~-----~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~  185 (664)
                      +     ++|++|+|++|++++..|..++++++|++|+|++|++.|.+
T Consensus       143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  189 (312)
T 1wwl_A          143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER  189 (312)
T ss_dssp             HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHH
T ss_pred             HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcch
Confidence            6     88999999999998888888889999999999999888763

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.29  E-value=1.4e-11  Score=125.97  Aligned_cols=112  Identities=20%  Similarity=0.187  Sum_probs=100.6

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      ..++.|+|++|.+++..+..+.++++|+.|+|++|.+++..+ . +.+++|++|+|++|+++ .+|..+..+++|++|+|
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l  107 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV  107 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence            368999999999998888889999999999999999987544 3 78999999999999998 78999999999999999


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      ++|++++..|..+.++++|++|+|++|++++..+.
T Consensus       108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~  142 (290)
T 1p9a_G          108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG  142 (290)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred             CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChh
Confidence            99999977778899999999999999999975543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.29  E-value=1.7e-11  Score=115.41  Aligned_cols=109  Identities=21%  Similarity=0.233  Sum_probs=94.6

Q ss_pred             EEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeeccc
Q 006019           75 VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN  154 (664)
Q Consensus        75 v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~  154 (664)
                      .+.+++++++++ .+|..+  .++|+.|+|++|.+++..+..++.+++|++|+|++|++++..+..+..+++|+.|+|++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            467889999987 466544  37999999999999977777789999999999999999976666679999999999999


Q ss_pred             CcccccCCccccCCCCCCEeeCCCCccccccc
Q 006019          155 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (664)
Q Consensus       155 N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p  186 (664)
                      |++++..|..+.++++|++|++++|++++..+
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  117 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPD  117 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCH
Confidence            99997777778999999999999999996544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.29  E-value=6e-12  Score=144.46  Aligned_cols=115  Identities=23%  Similarity=0.217  Sum_probs=100.6

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|++++..+..+.++++|++|+|++|.+++..|..++++++|++|+|++|++++..+..++++++|++|+|
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            37899999999999877777999999999999999999888888999999999999999999544446889999999999


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      ++|++++..|..++++++|++|+|++|++++..|.
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  139 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG  139 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccCch
Confidence            99999877777899999999999999999887765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.28  E-value=7.1e-12  Score=117.31  Aligned_cols=100  Identities=25%  Similarity=0.257  Sum_probs=89.7

Q ss_pred             CccceeEecC-----------CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecC
Q 006019           63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN  131 (664)
Q Consensus        63 C~w~gv~C~~-----------~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N  131 (664)
                      |+|+.+.|+.           .+++.|+|++|.|++..|..+.++++|+.|+|++|.|++..|..|..+++|++|+|++|
T Consensus         9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A            9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            6899999973           26789999999999988888999999999999999999777777899999999999999


Q ss_pred             cccccCCccccCCcccceeecccCcccccCC
Q 006019          132 NFSGPLPNDLGINHSLTILLLDNNDFVGSLS  162 (664)
Q Consensus       132 ~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP  162 (664)
                      +|++..|..+..+++|++|+|++|.|++..+
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            9997666679999999999999999987654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.27  E-value=1.4e-11  Score=128.36  Aligned_cols=118  Identities=23%  Similarity=0.339  Sum_probs=106.9

Q ss_pred             CccceeEecC-----------CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecC
Q 006019           63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN  131 (664)
Q Consensus        63 C~w~gv~C~~-----------~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N  131 (664)
                      |.|..+.|+.           .+++.|+|++|.+++..|..+.++++|+.|+|++|.+++..|..|+++++|++|+|++|
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  112 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN  112 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred             ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence            7899999973           26899999999999877778999999999999999999988999999999999999999


Q ss_pred             cccccCCccccCCcccceeecccCcccccCCccccCCCCCCEeeCCCCcccc
Q 006019          132 NFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (664)
Q Consensus       132 ~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g  183 (664)
                      +++ .+|..+.  ++|++|++++|++++..+..+.++++|++|++++|.++.
T Consensus       113 ~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~  161 (332)
T 2ft3_A          113 HLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN  161 (332)
T ss_dssp             CCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG
T ss_pred             cCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc
Confidence            999 7888775  899999999999997666678999999999999999963

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.27  E-value=7.5e-12  Score=140.33  Aligned_cols=115  Identities=20%  Similarity=0.202  Sum_probs=102.9

Q ss_pred             CcEEEEEeCCCCcccccc-ccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCccc-ccCCccccCCccccee
Q 006019           73 GKVVNLNLKDLCLEGTLA-PEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS-GPLPNDLGINHSLTIL  150 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip-~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~-g~ip~~~~~~~~L~~l  150 (664)
                      .+++.|+|++|.+.+..| ..+.++++|+.|+|++|.+.+.+|..+..+++|+.|+|++|+++ +.+|..+..+++|+.|
T Consensus       396 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L  475 (570)
T 2z63_A          396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL  475 (570)
T ss_dssp             TTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             CCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEE
Confidence            467899999999988766 46889999999999999999999999999999999999999998 6899999999999999


Q ss_pred             ecccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          151 LLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       151 ~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      +|++|++++..|..+.++++|++|++++|++++..|.
T Consensus       476 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  512 (570)
T 2z63_A          476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG  512 (570)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             ECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence            9999999988899999999999999999999987664

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.26  E-value=1.2e-11  Score=131.98  Aligned_cols=112  Identities=18%  Similarity=0.232  Sum_probs=97.5

Q ss_pred             cEEEEEeCCCCcccccccc-ccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           74 KVVNLNLKDLCLEGTLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~-~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      +++.|+++++.++. +|+. +..+++|+.|+|++|.+.+..|..|..+++|++|+|++|++++..|..++.+++|++|+|
T Consensus        46 ~l~~l~l~~~~l~~-l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           46 NQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCSEEEEESCEESE-ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEecCCchhh-CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            56789999988774 5654 688999999999999999877889999999999999999999887888899999999999


Q ss_pred             ccCcccccCCcc-ccCCCCCCEeeCCCCcccccccc
Q 006019          153 DNNDFVGSLSPE-IYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       153 ~~N~~~g~iP~~-~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      ++|+++ .+|.. +.++++|++|++++|++++..|.
T Consensus       125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~  159 (390)
T 3o6n_A          125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDD  159 (390)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred             CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChh
Confidence            999998 56665 58999999999999999876664

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.26  E-value=1.1e-11  Score=131.02  Aligned_cols=112  Identities=20%  Similarity=0.166  Sum_probs=101.1

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.|++..+..+.++++|+.|+|++|.|++..+..|..+++|++|+|++|++++..|..+..+++|+.|+|
T Consensus        64 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  143 (361)
T 2xot_A           64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL  143 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEEC
Confidence            58999999999999877778999999999999999999877778999999999999999999888899999999999999


Q ss_pred             ccCcccccCCccc----cCCCCCCEeeCCCCcccccc
Q 006019          153 DNNDFVGSLSPEI----YKLQVLSESQVDEGQLSSAA  185 (664)
Q Consensus       153 ~~N~~~g~iP~~~----~~l~~L~~l~l~~n~l~g~~  185 (664)
                      ++|++++ +|..+    .++++|+.|+|++|+|++..
T Consensus       144 ~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  179 (361)
T 2xot_A          144 SQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLP  179 (361)
T ss_dssp             CSSCCCS-CCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred             CCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence            9999995 67665    57999999999999999643

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.26  E-value=2.2e-12  Score=117.77  Aligned_cols=104  Identities=17%  Similarity=0.112  Sum_probs=94.6

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccc-cCCccccCCcccceee
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG-PLPNDLGINHSLTILL  151 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g-~ip~~~~~~~~L~~l~  151 (664)
                      .+++.|+|++|.+++.  ..++.+++|+.|+|++|.+++.+|..++.+++|++|+|++|++++ ..|..++.+++|++|+
T Consensus        42 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~  119 (149)
T 2je0_A           42 EELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD  119 (149)
T ss_dssp             TTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEE
T ss_pred             CCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEe
Confidence            5899999999999976  789999999999999999999899888889999999999999997 3558899999999999


Q ss_pred             cccCcccccCC---ccccCCCCCCEeeCCC
Q 006019          152 LDNNDFVGSLS---PEIYKLQVLSESQVDE  178 (664)
Q Consensus       152 l~~N~~~g~iP---~~~~~l~~L~~l~l~~  178 (664)
                      +++|.+++..+   ..+..+++|++|++++
T Consensus       120 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          120 LFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999997766   5789999999999874

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.26  E-value=4.4e-12  Score=118.37  Aligned_cols=109  Identities=17%  Similarity=0.094  Sum_probs=98.3

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCccccc-CCccccCCcccceee
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP-LPNDLGINHSLTILL  151 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~-ip~~~~~~~~L~~l~  151 (664)
                      .+++.|+|++|.+++.  ..+..+++|+.|+|++|.+++.+|..+..+++|++|+|++|++++. .+..+..+++|++|+
T Consensus        49 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~  126 (168)
T 2ell_A           49 VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD  126 (168)
T ss_dssp             GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEE
T ss_pred             CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEE
Confidence            5899999999999976  7899999999999999999998998888899999999999999963 227899999999999


Q ss_pred             cccCcccccCC---ccccCCCCCCEeeCCCCcccc
Q 006019          152 LDNNDFVGSLS---PEIYKLQVLSESQVDEGQLSS  183 (664)
Q Consensus       152 l~~N~~~g~iP---~~~~~l~~L~~l~l~~n~l~g  183 (664)
                      +++|.+++..+   ..+..+++|++|++++|.+..
T Consensus       127 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          127 LFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             CCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             eeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            99999996655   478999999999999998864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.26  E-value=8.9e-12  Score=141.34  Aligned_cols=114  Identities=19%  Similarity=0.205  Sum_probs=104.3

Q ss_pred             cEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecc
Q 006019           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~  153 (664)
                      +++.|+|++|.|++..|..|.+|++|++|+|++|.|++..|..|.+|++|++|+|++|++++..+..++++++|++|+|+
T Consensus        77 ~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls  156 (635)
T 4g8a_A           77 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA  156 (635)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccc
Confidence            68999999999997666679999999999999999998777789999999999999999998666679999999999999


Q ss_pred             cCcccc-cCCccccCCCCCCEeeCCCCcccccccc
Q 006019          154 NNDFVG-SLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       154 ~N~~~g-~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      +|.+++ .+|..++++++|++|++++|++++..|.
T Consensus       157 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  191 (635)
T 4g8a_A          157 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  191 (635)
T ss_dssp             SSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             cCccccCCCchhhccchhhhhhcccCccccccccc
Confidence            999976 6789999999999999999999987765

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.25  E-value=1.9e-11  Score=127.24  Aligned_cols=119  Identities=24%  Similarity=0.374  Sum_probs=105.3

Q ss_pred             CCccceeEecC-----------CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeec
Q 006019           62 PCSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH  130 (664)
Q Consensus        62 ~C~w~gv~C~~-----------~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~  130 (664)
                      .|.|+.+.|++           ..++.|+|++|++++..+..+.++++|++|+|++|.+++..|..|+++++|++|+|++
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence            36899999973           2678999999999987777899999999999999999998899999999999999999


Q ss_pred             CcccccCCccccCCcccceeecccCcccccCCccccCCCCCCEeeCCCCcccc
Q 006019          131 NNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (664)
Q Consensus       131 N~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g  183 (664)
                      |+++ .+|..+.  ++|+.|++++|++++..+..+.++++|++|++++|+++.
T Consensus       110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  159 (330)
T 1xku_A          110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS  159 (330)
T ss_dssp             SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred             CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence            9998 6887764  789999999999997777778899999999999998863

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.25  E-value=1.3e-11  Score=139.33  Aligned_cols=112  Identities=21%  Similarity=0.205  Sum_probs=103.5

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.+++..|..++.+++|+.|+|++|.+++..|..|+++++|++|+|++|.+++..+..++++++|++|+|
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  154 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  154 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence            47899999999999888889999999999999999999988888999999999999999999544444689999999999


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  184 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~  184 (664)
                      ++|.+++..|..++++++|++|+|++|++++.
T Consensus       155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  186 (597)
T 3oja_B          155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  186 (597)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred             eCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence            99999999998999999999999999999975

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.25  E-value=1.3e-12  Score=134.98  Aligned_cols=110  Identities=21%  Similarity=0.281  Sum_probs=81.6

Q ss_pred             CcEEEEEeCCCCccccccccc--cCCCCCCEEEccCCcccccCCcccCCC-----CCCCEEEeecCcccccCCccccCCc
Q 006019           73 GKVVNLNLKDLCLEGTLAPEI--QSLTHIKSIILRNNSFSGIIPEGFGEL-----EELEVLDFGHNNFSGPLPNDLGINH  145 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~--~~l~~L~~l~L~~N~l~g~ip~~~~~l-----~~L~~L~l~~N~l~g~ip~~~~~~~  145 (664)
                      .+++.|+|++|.++|.+|..+  ..+++|+.|+|++|.+++. |..++.+     ++|++|+|++|++++..|..++.++
T Consensus        95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  173 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP  173 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred             CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence            367777777777777777765  7777788888888877766 6666665     7778888888887776667777777


Q ss_pred             ccceeecccCccccc--CCccc--cCCCCCCEeeCCCCcccc
Q 006019          146 SLTILLLDNNDFVGS--LSPEI--YKLQVLSESQVDEGQLSS  183 (664)
Q Consensus       146 ~L~~l~l~~N~~~g~--iP~~~--~~l~~L~~l~l~~n~l~g  183 (664)
                      +|++|+|++|++.|.  +|..+  .++++|++|+|++|++++
T Consensus       174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~  215 (312)
T 1wwl_A          174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET  215 (312)
T ss_dssp             SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC
T ss_pred             CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc
Confidence            788888887777766  34455  677777888888777773

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.24  E-value=6.2e-12  Score=139.54  Aligned_cols=108  Identities=22%  Similarity=0.257  Sum_probs=99.4

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.+++..|..+.++++|++|+|++|.+++..|..|+++++|++|+|++|+++ .+|..  .+++|++|+|
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence            58999999999999877788999999999999999999988999999999999999999999 68876  8999999999


Q ss_pred             ccCcccc-cCCccccCCCCCCEeeCCCCcccc
Q 006019          153 DNNDFVG-SLSPEIYKLQVLSESQVDEGQLSS  183 (664)
Q Consensus       153 ~~N~~~g-~iP~~~~~l~~L~~l~l~~n~l~g  183 (664)
                      ++|++++ .+|..++++++|++|++++|++++
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~  129 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK  129 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred             cCCccccccchhhhccCCcceEEEecCcccch
Confidence            9999988 689999999999999999999987

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.23  E-value=3e-11  Score=135.48  Aligned_cols=115  Identities=17%  Similarity=0.087  Sum_probs=94.9

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.+++..+..+.++++|+.|+|++|.+++..|..|+++++|++|+|++|++++..|..++++++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            36788888888888777778888888888888888888877778888888888888888888777778888888888888


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCcccc-cccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSS-AAKK  187 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g-~~p~  187 (664)
                      ++|++++..+..++++++|++|++++|++++ .+|.
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~  143 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE  143 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChh
Confidence            8888886555568888888888888888876 4565

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.23  E-value=1.9e-11  Score=115.00  Aligned_cols=109  Identities=19%  Similarity=0.234  Sum_probs=92.1

Q ss_pred             CcEEEEEeCCCCccccccccccCCC-CCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceee
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLT-HIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~-~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~  151 (664)
                      .+++.|+|++|+++ .+| .+..+. +|+.|+|++|.+++.  ..++.+++|++|+|++|++++..|..++.+++|++|+
T Consensus        19 ~~L~~L~l~~n~l~-~i~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           19 VRDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             TSCEEEECTTSCCC-SCC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CCceEEEeeCCCCc-hhH-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            47899999999999 455 466555 999999999999975  6899999999999999999964334448999999999


Q ss_pred             cccCcccccCCc--cccCCCCCCEeeCCCCcccccccc
Q 006019          152 LDNNDFVGSLSP--EIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       152 l~~N~~~g~iP~--~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      |++|+++ .+|.  .+..+++|++|++++|.++. +|.
T Consensus        95 L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~  130 (176)
T 1a9n_A           95 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKH  130 (176)
T ss_dssp             CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STT
T ss_pred             CCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHh
Confidence            9999994 6887  88999999999999999974 443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.22  E-value=1.8e-11  Score=137.18  Aligned_cols=108  Identities=22%  Similarity=0.228  Sum_probs=100.9

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.+++..|..+.++++|+.|+|++|.+++..|..|+++++|++|+|++|+++ .+|..  .+++|++|+|
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence            57999999999999877789999999999999999999988999999999999999999999 68877  8999999999


Q ss_pred             ccCcccc-cCCccccCCCCCCEeeCCCCcccc
Q 006019          153 DNNDFVG-SLSPEIYKLQVLSESQVDEGQLSS  183 (664)
Q Consensus       153 ~~N~~~g-~iP~~~~~l~~L~~l~l~~n~l~g  183 (664)
                      ++|++++ .+|..++++++|++|++++|++++
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCcccc
Confidence            9999997 678899999999999999999986

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.20  E-value=2.1e-11  Score=143.33  Aligned_cols=115  Identities=19%  Similarity=0.185  Sum_probs=94.9

Q ss_pred             CcEEEEEeCCCCccccc-cccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCcc--ccCCcccce
Q 006019           73 GKVVNLNLKDLCLEGTL-APEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND--LGINHSLTI  149 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~i-p~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~--~~~~~~L~~  149 (664)
                      .+++.|+|++|.+.+.+ |..+.+|++|++|+|++|.+.+..|..|+++++|++|+|++|++++.+|..  ++++++|++
T Consensus        48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~  127 (844)
T 3j0a_A           48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR  127 (844)
T ss_dssp             CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred             ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence            47888888888777777 556888888888888888888888888888888888888888888877765  788888888


Q ss_pred             eecccCcccccCC-ccccCCCCCCEeeCCCCcccccccc
Q 006019          150 LLLDNNDFVGSLS-PEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       150 l~l~~N~~~g~iP-~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      |+|++|.+++..| ..++++++|++|+|++|++++..|.
T Consensus       128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~  166 (844)
T 3j0a_A          128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH  166 (844)
T ss_dssp             EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred             EECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH
Confidence            8888888887655 5688888888888888888877665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.20  E-value=2.2e-11  Score=133.83  Aligned_cols=122  Identities=16%  Similarity=0.106  Sum_probs=107.5

Q ss_pred             CCccceeEecC-CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccC-CCCCCCEEEeecCcccccCCc
Q 006019           62 PCSWFGVECSD-GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFG-ELEELEVLDFGHNNFSGPLPN  139 (664)
Q Consensus        62 ~C~w~gv~C~~-~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~-~l~~L~~L~l~~N~l~g~ip~  139 (664)
                      .|.+.++.|.. .++..|+|++|.+++..|..++++++|+.|+|++|.+++.+|..+. .+++|+.|+|++|.+++. | 
T Consensus       108 ~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-  185 (487)
T 3oja_A          108 NNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-  185 (487)
T ss_dssp             SSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-
T ss_pred             CCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-
Confidence            35667777764 6899999999999999898999999999999999999999998886 899999999999999976 3 


Q ss_pred             cccCCcccceeecccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          140 DLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       140 ~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      .+..+++|+.|+|++|++++ +|+.+..+++|+.|+|++|++++ +|.
T Consensus       186 ~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~  231 (487)
T 3oja_A          186 GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEK  231 (487)
T ss_dssp             CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECT
T ss_pred             ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cch
Confidence            34569999999999999997 56669999999999999999997 564

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.19  E-value=9.5e-12  Score=138.94  Aligned_cols=115  Identities=18%  Similarity=0.210  Sum_probs=106.4

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccc-cCCccccCCcccceee
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG-PLPNDLGINHSLTILL  151 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g-~ip~~~~~~~~L~~l~  151 (664)
                      .+++.|+|++|.+++..|..++++++|++|+|++|.+++..|..|+++++|++|+|++|++++ .+|..++++++|++|+
T Consensus        50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~  129 (549)
T 2z81_A           50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR  129 (549)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred             CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE
Confidence            589999999999999888889999999999999999998888779999999999999999997 5788899999999999


Q ss_pred             cccCcccccCC-ccccCCCCCCEeeCCCCcccccccc
Q 006019          152 LDNNDFVGSLS-PEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       152 l~~N~~~g~iP-~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      +++|.+.+.+| ..+.++++|++|++++|++++.+|.
T Consensus       130 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  166 (549)
T 2z81_A          130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ  166 (549)
T ss_dssp             EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred             CCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence            99999777887 4799999999999999999998886

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.19  E-value=2.3e-11  Score=136.28  Aligned_cols=94  Identities=14%  Similarity=0.110  Sum_probs=65.5

Q ss_pred             cCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccc--cCCccccCCcccceeecccCcccccCCcc-ccCCCC
Q 006019           94 QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG--PLPNDLGINHSLTILLLDNNDFVGSLSPE-IYKLQV  170 (664)
Q Consensus        94 ~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g--~ip~~~~~~~~L~~l~l~~N~~~g~iP~~-~~~l~~  170 (664)
                      ..+++|+.|+|++|.+++.+|..++++++|+.|+|++|++++  .+|..++.+++|+.|+|++|++++.+|.. +..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            556677777777777777777777777777777777777775  34455667777777777777777666654 556677


Q ss_pred             CCEeeCCCCcccccccc
Q 006019          171 LSESQVDEGQLSSAAKK  187 (664)
Q Consensus       171 L~~l~l~~n~l~g~~p~  187 (664)
                      |++|++++|++++.+|.
T Consensus       430 L~~L~l~~n~l~~~~~~  446 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFR  446 (562)
T ss_dssp             CCEEECCSSCCCGGGGS
T ss_pred             CCEEECCCCCCCcchhh
Confidence            77777777777766664

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.18  E-value=2.6e-11  Score=134.52  Aligned_cols=112  Identities=16%  Similarity=0.133  Sum_probs=73.2

Q ss_pred             cEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccc--cCCccccCCcccceee
Q 006019           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG--PLPNDLGINHSLTILL  151 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g--~ip~~~~~~~~L~~l~  151 (664)
                      +++.|++++|++.+..  ....+++|+.|+|++|.+++.+|..++.+++|+.|+|++|++++  .+|..++.+++|++|+
T Consensus       303 ~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~  380 (520)
T 2z7x_B          303 NIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD  380 (520)
T ss_dssp             CCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEE
T ss_pred             ceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEE
Confidence            4666777766655322  12566667777777777776666666777777777777777765  5556666677777777


Q ss_pred             cccCcccccCCcc-ccCCCCCCEeeCCCCcccccccc
Q 006019          152 LDNNDFVGSLSPE-IYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       152 l~~N~~~g~iP~~-~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      |++|.+++.+|.. +..+++|++|++++|++++.+|.
T Consensus       381 Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~  417 (520)
T 2z7x_B          381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR  417 (520)
T ss_dssp             CCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGG
T ss_pred             CCCCcCCcccccchhccCccCCEEECcCCCCCcchhh
Confidence            7777776666654 55666777777777777666654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.18  E-value=5.3e-11  Score=126.96  Aligned_cols=111  Identities=23%  Similarity=0.269  Sum_probs=102.1

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCcc-ccCCcccceee
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND-LGINHSLTILL  151 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~-~~~~~~L~~l~  151 (664)
                      .+++.|+|++|.+++..+..+..+++|+.|+|++|.+.+..|..++++++|++|+|++|+++ .+|.. +..+++|++|+
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~  147 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS  147 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEE
Confidence            36899999999999877778999999999999999999988888999999999999999999 56665 58999999999


Q ss_pred             cccCcccccCCccccCCCCCCEeeCCCCccccc
Q 006019          152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  184 (664)
Q Consensus       152 l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~  184 (664)
                      |++|++++..|..+.++++|++|++++|++++.
T Consensus       148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred             CCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence            999999988888899999999999999999864

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.18  E-value=3.3e-11  Score=132.18  Aligned_cols=114  Identities=20%  Similarity=0.193  Sum_probs=102.2

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.+++..|..+.++++|+.|+|++|.+++..+..|.++++|++|+|++|++++..|..+..+++|+.|+|
T Consensus        56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l  135 (477)
T 2id5_A           56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV  135 (477)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred             CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence            47899999999999888889999999999999999998665667889999999999999999988888999999999999


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCccccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p  186 (664)
                      ++|.+++..|..+.++++|++|+|++|++++..+
T Consensus       136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A          136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             CCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred             CCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence            9999998888889999999999999999986544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.17  E-value=1.2e-11  Score=127.78  Aligned_cols=114  Identities=12%  Similarity=0.052  Sum_probs=67.2

Q ss_pred             cEEEEEeCCCCcccccc----ccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCccccc--CC--ccccCCc
Q 006019           74 KVVNLNLKDLCLEGTLA----PEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP--LP--NDLGINH  145 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip----~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~--ip--~~~~~~~  145 (664)
                      +++.|+|++|.+++..+    ..+..+++|+.|+|++|.+.+..|..++.+++|++|+|++|++.+.  ++  ..++.++
T Consensus       118 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~  197 (310)
T 4glp_A          118 ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP  197 (310)
T ss_dssp             CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC
T ss_pred             CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC
Confidence            56666666666666544    2344566666666666666666666666666666666666666542  22  2234566


Q ss_pred             ccceeecccCccc--ccCCcc-ccCCCCCCEeeCCCCcccccccc
Q 006019          146 SLTILLLDNNDFV--GSLSPE-IYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       146 ~L~~l~l~~N~~~--g~iP~~-~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      +|++|+|++|+++  +.++.. +.++++|++|+|++|++++.+|.
T Consensus       198 ~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~  242 (310)
T 4glp_A          198 AIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP  242 (310)
T ss_dssp             CCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS
T ss_pred             CCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh
Confidence            6666666666665  122222 34566666666666666666543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.17  E-value=3.7e-11  Score=137.83  Aligned_cols=115  Identities=17%  Similarity=0.162  Sum_probs=100.6

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.+++..|..++++++|+.|+|++|.+++..+..|+++++|++|+|++|++++..|..++++++|++|+|
T Consensus        49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  128 (680)
T 1ziw_A           49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL  128 (680)
T ss_dssp             TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred             CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence            47899999999999888888999999999999999998654556899999999999999998766678899999999999


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      ++|.+++..|..++++++|++|++++|++++..|.
T Consensus       129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  163 (680)
T 1ziw_A          129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE  163 (680)
T ss_dssp             CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred             CCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence            99999988888889999999999999999887664

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.17  E-value=4.8e-11  Score=134.90  Aligned_cols=115  Identities=21%  Similarity=0.208  Sum_probs=104.0

Q ss_pred             CcEEEEEeCCCCcccccccc-ccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCccccc---CCccccCCcccc
Q 006019           73 GKVVNLNLKDLCLEGTLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP---LPNDLGINHSLT  148 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~-~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~---ip~~~~~~~~L~  148 (664)
                      .+++.|+|++|.+.+..|+. +.++++|+.|+|++|.+.+..|..++.+++|+.|+|++|++++.   .+..+..+++|+
T Consensus       400 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~  479 (606)
T 3t6q_A          400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE  479 (606)
T ss_dssp             TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCC
T ss_pred             ccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCcc
Confidence            47899999999999887765 89999999999999999999999999999999999999999873   335688999999


Q ss_pred             eeecccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          149 ILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       149 ~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      .|+|++|++++..|..+.++++|++|+|++|++++.+|.
T Consensus       480 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  518 (606)
T 3t6q_A          480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE  518 (606)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGG
T ss_pred             EEECCCCccCccChhhhccccCCCEEECCCCccCcCChh
Confidence            999999999999999999999999999999999998875

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.16  E-value=1.7e-11  Score=115.35  Aligned_cols=107  Identities=20%  Similarity=0.198  Sum_probs=95.3

Q ss_pred             cEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCc--cccCCcccceee
Q 006019           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN--DLGINHSLTILL  151 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~--~~~~~~~L~~l~  151 (664)
                      +++.|+|++|.+++.  +.+..+++|+.|+|++|.+++..|..++.+++|++|+|++|+++ .+|.  .+..+++|+.|+
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~  119 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC  119 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence            899999999999974  68999999999999999999654455589999999999999996 6787  789999999999


Q ss_pred             cccCcccccCCcc----ccCCCCCCEeeCCCCccccc
Q 006019          152 LDNNDFVGSLSPE----IYKLQVLSESQVDEGQLSSA  184 (664)
Q Consensus       152 l~~N~~~g~iP~~----~~~l~~L~~l~l~~n~l~g~  184 (664)
                      +++|.++ .+|..    +..+++|+.|+++.|.....
T Consensus       120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~  155 (176)
T 1a9n_A          120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKER  155 (176)
T ss_dssp             CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred             ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence            9999998 67775    89999999999999987643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.16  E-value=2.4e-11  Score=125.42  Aligned_cols=109  Identities=21%  Similarity=0.186  Sum_probs=79.2

Q ss_pred             cEEEEEeCCCCccccccccc--cCCCCCCEEEccCCcccccCC----cccCCCCCCCEEEeecCcccccCCccccCCccc
Q 006019           74 KVVNLNLKDLCLEGTLAPEI--QSLTHIKSIILRNNSFSGIIP----EGFGELEELEVLDFGHNNFSGPLPNDLGINHSL  147 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~~--~~l~~L~~l~L~~N~l~g~ip----~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L  147 (664)
                      +++.|+|++|.+.|.+|..+  ..+++|+.|+|++|.+++.+|    ..+..+++|++|+|++|++++..|..++.+++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            47777777777777777776  777788888888888777655    344567778888888888877666777777788


Q ss_pred             ceeecccCccccc--CCcc--ccCCCCCCEeeCCCCccc
Q 006019          148 TILLLDNNDFVGS--LSPE--IYKLQVLSESQVDEGQLS  182 (664)
Q Consensus       148 ~~l~l~~N~~~g~--iP~~--~~~l~~L~~l~l~~n~l~  182 (664)
                      ++|+|++|++.|.  ++..  +.++++|++|+|++|+++
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  210 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME  210 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC
Confidence            8888888877653  3222  357777888888888775

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.15  E-value=4.3e-11  Score=118.48  Aligned_cols=112  Identities=16%  Similarity=0.177  Sum_probs=99.7

Q ss_pred             CcEEEEEeCCCC-ccccccccccCCCCCCEEEccC-CcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccc--
Q 006019           73 GKVVNLNLKDLC-LEGTLAPEIQSLTHIKSIILRN-NSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLT--  148 (664)
Q Consensus        73 ~~v~~l~L~~~~-l~g~ip~~~~~l~~L~~l~L~~-N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~--  148 (664)
                      .+++.|+|++|. +++..+..+.++++|+.|+|++ |.+++..+..|.++++|++|+|++|++++ +|. ++.+++|+  
T Consensus        55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L  132 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIF  132 (239)
T ss_dssp             TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSE
T ss_pred             CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccc
Confidence            479999999997 7755555799999999999998 99997777889999999999999999997 887 88889998  


Q ss_pred             -eeecccC-cccccCCccccCCCCCC-EeeCCCCcccccccc
Q 006019          149 -ILLLDNN-DFVGSLSPEIYKLQVLS-ESQVDEGQLSSAAKK  187 (664)
Q Consensus       149 -~l~l~~N-~~~g~iP~~~~~l~~L~-~l~l~~n~l~g~~p~  187 (664)
                       +|++++| ++++..+..+.++++|+ .|++++|+++ .+|.
T Consensus       133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~  173 (239)
T 2xwt_C          133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG  173 (239)
T ss_dssp             EEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECT
T ss_pred             cEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCH
Confidence             9999999 99876666799999999 9999999998 6775

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.13  E-value=4.8e-11  Score=137.45  Aligned_cols=111  Identities=25%  Similarity=0.335  Sum_probs=107.0

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      ..+..|+|++|.+. .+|..+++|++|+.|+|++|.|+ .||..|++|++|++|+|++|+|+ .||..++.+++|++|+|
T Consensus       224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L  300 (727)
T 4b8c_D          224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF  300 (727)
T ss_dssp             CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred             CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence            57899999999998 89999999999999999999999 89999999999999999999999 89999999999999999


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      ++|.|+ .||..|+++++|++|+|++|.|+|.+|.
T Consensus       301 ~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          301 FDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             CSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred             CCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence            999997 8999999999999999999999999986

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.13  E-value=2.1e-10  Score=124.38  Aligned_cols=114  Identities=17%  Similarity=0.098  Sum_probs=97.4

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.+++..+..+.++++|+.|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|
T Consensus        88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l  167 (440)
T 3zyj_A           88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL  167 (440)
T ss_dssp             SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCC
Confidence            47899999999999877788999999999999999999766667999999999999999999766667888999999999


Q ss_pred             ccCcccccCCc-cccCCCCCCEeeCCCCcccccccc
Q 006019          153 DNNDFVGSLSP-EIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       153 ~~N~~~g~iP~-~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      ++|+..+.+|. .+.++++|++|+|++|+++ .+|.
T Consensus       168 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~  202 (440)
T 3zyj_A          168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN  202 (440)
T ss_dssp             CCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC
T ss_pred             CCCCCcceeCcchhhcccccCeecCCCCcCc-cccc
Confidence            98766666666 5778889999999999887 4554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.12  E-value=1.4e-10  Score=120.60  Aligned_cols=111  Identities=17%  Similarity=0.206  Sum_probs=93.9

Q ss_pred             CcEEEEEeCCCCcc--ccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCccccee
Q 006019           73 GKVVNLNLKDLCLE--GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTIL  150 (664)
Q Consensus        73 ~~v~~l~L~~~~l~--g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l  150 (664)
                      .+++.|+|++|.+.  |..+..+.++++|+.|++++|.++. +|..+.  ++|+.|+|++|++++..|..+..+++|+.|
T Consensus       145 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  221 (330)
T 1xku_A          145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKL  221 (330)
T ss_dssp             TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEE
T ss_pred             ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence            47889999999985  4677788999999999999999874 776654  789999999999998878888889999999


Q ss_pred             ecccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          151 LLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       151 ~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      +|++|.+++..|..+..+++|++|++++|+++ .+|.
T Consensus       222 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~  257 (330)
T 1xku_A          222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG  257 (330)
T ss_dssp             ECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCT
T ss_pred             ECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCCh
Confidence            99999998877778888999999999999888 5664

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.12  E-value=1.1e-10  Score=120.79  Aligned_cols=107  Identities=14%  Similarity=0.083  Sum_probs=65.0

Q ss_pred             cEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCccc-CCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGF-GELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~-~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      +++.|+|++|.+++..+..+..+++|+.|+|++|.+++..|..+ ..+++|++|+|++|++++. | ....+++|+.|+|
T Consensus       121 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~L  198 (317)
T 3o53_A          121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDL  198 (317)
T ss_dssp             SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEEC
T ss_pred             CCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEEC
Confidence            45566666666665555556666666666666666666555554 3566666666666666643 2 2234666666666


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCcccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g  183 (664)
                      ++|++++ +|+.+..+++|+.|+|++|++++
T Consensus       199 s~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~  228 (317)
T 3o53_A          199 SSNKLAF-MGPEFQSAAGVTWISLRNNKLVL  228 (317)
T ss_dssp             CSSCCCE-ECGGGGGGTTCSEEECTTSCCCE
T ss_pred             CCCcCCc-chhhhcccCcccEEECcCCcccc
Confidence            6666663 44456666666666666666663

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.11  E-value=1.4e-10  Score=108.80  Aligned_cols=98  Identities=20%  Similarity=0.269  Sum_probs=84.7

Q ss_pred             CccceeEecC-----------CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecC
Q 006019           63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN  131 (664)
Q Consensus        63 C~w~gv~C~~-----------~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N  131 (664)
                      |...-+.|++           .+++.|+|++|.|++..|..+.++++|+.|+|++|.|++..+..|.++++|++|+|++|
T Consensus        12 C~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           12 CDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             ECSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ECCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            4456677763           36789999999999988889999999999999999999865666799999999999999


Q ss_pred             cccccCCccccCCcccceeecccCccccc
Q 006019          132 NFSGPLPNDLGINHSLTILLLDNNDFVGS  160 (664)
Q Consensus       132 ~l~g~ip~~~~~~~~L~~l~l~~N~~~g~  160 (664)
                      ++++..+..+..+++|++|+|++|.|...
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            99965555599999999999999999854

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.11  E-value=9e-11  Score=131.06  Aligned_cols=101  Identities=20%  Similarity=0.233  Sum_probs=92.0

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccC-CccccCCcccceee
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL-PNDLGINHSLTILL  151 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~i-p~~~~~~~~L~~l~  151 (664)
                      .+++.|+|++|.|+ .+|..+++|++|+.|+|++|.|++ +| .++.|++|+.|+|++|++++.+ |..++.+++|+.|+
T Consensus       463 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~  539 (567)
T 1dce_A          463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN  539 (567)
T ss_dssp             TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred             ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence            58999999999999 899999999999999999999997 78 8999999999999999999887 99999999999999


Q ss_pred             cccCcccccCCcc---ccCCCCCCEeeC
Q 006019          152 LDNNDFVGSLSPE---IYKLQVLSESQV  176 (664)
Q Consensus       152 l~~N~~~g~iP~~---~~~l~~L~~l~l  176 (664)
                      |++|.+++..|..   +..+++|+.|++
T Consensus       540 L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          540 LQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             ecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            9999999876632   335889998875

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.11  E-value=1.2e-10  Score=126.68  Aligned_cols=113  Identities=21%  Similarity=0.218  Sum_probs=101.5

Q ss_pred             CcEEEEEeCCCCccccccc-cccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceee
Q 006019           73 GKVVNLNLKDLCLEGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~-~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~  151 (664)
                      .++..|+|++++.-+.+++ .+.++++|+.|+|++|.+++ +| .+..+++|+.|+|++|++++..|..+.++++|+.|+
T Consensus       171 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  248 (452)
T 3zyi_A          171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW  248 (452)
T ss_dssp             TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEE
T ss_pred             CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEE
Confidence            3788999999666667776 58999999999999999985 55 588999999999999999998899999999999999


Q ss_pred             cccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       152 l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      |++|++++..|..+.++++|+.|+|++|++++..+.
T Consensus       249 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  284 (452)
T 3zyi_A          249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD  284 (452)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             eCCCcCceECHHHhcCCCCCCEEECCCCcCCccChH
Confidence            999999999999999999999999999999965554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.10  E-value=9.3e-13  Score=126.64  Aligned_cols=110  Identities=17%  Similarity=0.190  Sum_probs=84.3

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.+++ +| .+.++++|+.|+|++|.++ .+|..+..+++|++|+|++|++++ +| .++.+++|++|+|
T Consensus        48 ~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l  122 (198)
T 1ds9_A           48 KACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYM  122 (198)
T ss_dssp             TTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEE
T ss_pred             CCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEEC
Confidence            467888888888876 66 7788888888888888887 677777777788888888888886 55 5777888888888


Q ss_pred             ccCcccccCC-ccccCCCCCCEeeCCCCcccccccc
Q 006019          153 DNNDFVGSLS-PEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       153 ~~N~~~g~iP-~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      ++|++++.-+ ..+.++++|++|++++|.+++.+|.
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             CCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            8888874222 4677888888888888888877664

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.10  E-value=5.6e-11  Score=124.97  Aligned_cols=114  Identities=23%  Similarity=0.239  Sum_probs=100.4

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCc--cccCCccccee
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN--DLGINHSLTIL  150 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~--~~~~~~~L~~l  150 (664)
                      .+++.|+|++|.+++..|..+.++++|++|+|++|.+++..+..++++++|++|+|++|+++ .+|.  .+..+++|++|
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L  154 (353)
T 2z80_A           76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQIL  154 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEE
Confidence            58999999999999877888999999999999999999644445899999999999999999 4665  78899999999


Q ss_pred             ecccCc-ccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          151 LLDNND-FVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       151 ~l~~N~-~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      ++++|+ +.+..|..+.++++|++|++++|++++..|.
T Consensus       155 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  192 (353)
T 2z80_A          155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK  192 (353)
T ss_dssp             EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred             ECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence            999995 6655677899999999999999999988775

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.10  E-value=7.2e-11  Score=122.98  Aligned_cols=110  Identities=22%  Similarity=0.247  Sum_probs=83.8

Q ss_pred             CcEEEEEeCCCCcc--ccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCccccee
Q 006019           73 GKVVNLNLKDLCLE--GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTIL  150 (664)
Q Consensus        73 ~~v~~l~L~~~~l~--g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l  150 (664)
                      .+++.|+|++|.++  |..|..+..+ +|+.|++++|.+++ +|..+.  ++|+.|+|++|.+++..|..+..+++|+.|
T Consensus       147 ~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L  222 (332)
T 2ft3_A          147 RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRL  222 (332)
T ss_dssp             SSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCC
T ss_pred             ccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence            47889999999985  4666677777 78888888888875 666554  577788888888877666777777888888


Q ss_pred             ecccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          151 LLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       151 ~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      +|++|++++..|..+..+++|++|++++|+++ .+|.
T Consensus       223 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~  258 (332)
T 2ft3_A          223 GLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPA  258 (332)
T ss_dssp             BCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCT
T ss_pred             ECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecCh
Confidence            88888887766667777888888888888777 5554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.10  E-value=1.5e-10  Score=119.75  Aligned_cols=111  Identities=18%  Similarity=0.211  Sum_probs=98.3

Q ss_pred             CcEEEEEeCCCCccccccccc-cCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceee
Q 006019           73 GKVVNLNLKDLCLEGTLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~-~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~  151 (664)
                      .+++.|+|++|.+++..+..+ ..+++|+.|+|++|.+++. | ....+++|+.|+|++|++++ +|..+..+++|+.|+
T Consensus       144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~  220 (317)
T 3o53_A          144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWIS  220 (317)
T ss_dssp             SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEE
T ss_pred             CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEE
Confidence            479999999999998877776 4799999999999999875 3 34469999999999999995 677799999999999


Q ss_pred             cccCcccccCCccccCCCCCCEeeCCCCccc-ccccc
Q 006019          152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLS-SAAKK  187 (664)
Q Consensus       152 l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~-g~~p~  187 (664)
                      |++|+++ .+|..+..+++|+.|++++|.++ +.+|.
T Consensus       221 L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~  256 (317)
T 3o53_A          221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD  256 (317)
T ss_dssp             CTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred             CcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence            9999999 68999999999999999999999 55554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.07  E-value=1.4e-10  Score=129.08  Aligned_cols=97  Identities=24%  Similarity=0.235  Sum_probs=74.6

Q ss_pred             cEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecc
Q 006019           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~  153 (664)
                      ++..|+|++|.|++ +|.   .+++|+.|+|++|.|++ +|.   .+++|+.|+|++|++++ +|. +.  ++|+.|+|+
T Consensus       121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls  188 (571)
T 3cvr_A          121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS  188 (571)
T ss_dssp             TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred             CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence            56666666666665 555   57788888888888886 775   57889999999999997 887 65  889999999


Q ss_pred             cCcccccCCccccCCCCC-------CEeeCCCCcccccccc
Q 006019          154 NNDFVGSLSPEIYKLQVL-------SESQVDEGQLSSAAKK  187 (664)
Q Consensus       154 ~N~~~g~iP~~~~~l~~L-------~~l~l~~n~l~g~~p~  187 (664)
                      +|+++ .||. +.+  +|       +.|+|++|+|+. ||.
T Consensus       189 ~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~  224 (571)
T 3cvr_A          189 TNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPE  224 (571)
T ss_dssp             SSCCS-SCCC-CC----------CCEEEECCSSCCCC-CCG
T ss_pred             CCCCC-chhh-HHH--hhhcccccceEEecCCCccee-cCH
Confidence            99998 7887 655  67       899999999984 665

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.07  E-value=3.2e-10  Score=115.82  Aligned_cols=106  Identities=24%  Similarity=0.350  Sum_probs=79.8

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.+++. ++ +.++++|+.|+|++|.+++ +| .+..+++|++|+|++|++++ + +.+..+++|+.|+|
T Consensus        68 ~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l  141 (291)
T 1h6t_A           68 PNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYL  141 (291)
T ss_dssp             TTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEEC
T ss_pred             CCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEc
Confidence            4678888888888763 33 7888888888888888875 33 47788888888888888876 3 46777888888888


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCccccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p  186 (664)
                      ++|++++.  +.+.++++|++|++++|++++..|
T Consensus       142 ~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~  173 (291)
T 1h6t_A          142 GNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  173 (291)
T ss_dssp             CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             cCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence            88888764  567788888888888888876544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.07  E-value=1.9e-12  Score=124.53  Aligned_cols=106  Identities=24%  Similarity=0.368  Sum_probs=96.0

Q ss_pred             CcEEEEEeCCCCccccccc------cccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcc
Q 006019           73 GKVVNLNLKDLCLEGTLAP------EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHS  146 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~------~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~  146 (664)
                      .+++.++|+.+.|+|.+|+      .+..+++|+.|+|++|.+++ +| .+..+++|++|+|++|+++ .+|..+..+++
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~   94 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT   94 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred             ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence            4667777788888888876      89999999999999999997 88 8999999999999999999 78988888899


Q ss_pred             cceeecccCcccccCCccccCCCCCCEeeCCCCcccc
Q 006019          147 LTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (664)
Q Consensus       147 L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g  183 (664)
                      |+.|+|++|++++ +| .+.++++|++|++++|++++
T Consensus        95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~  129 (198)
T 1ds9_A           95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN  129 (198)
T ss_dssp             CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC
T ss_pred             CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc
Confidence            9999999999997 56 68999999999999999986

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.06  E-value=3.8e-10  Score=113.24  Aligned_cols=136  Identities=13%  Similarity=0.095  Sum_probs=103.7

Q ss_pred             hcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      ...++.|+.+.||+.... +..+++|.........     ...+.+|+++++.++ |..+.++++++...+  ..++|||
T Consensus        19 ~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~-----~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~--~~~lv~e   90 (263)
T 3tm0_A           19 VKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGT-----TYDVEREKDMMLWLEGKLPVPKVLHFERHDG--WSNLLMS   90 (263)
T ss_dssp             EECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTS-----TTCHHHHHHHHHHHTTTSCCCCEEEEEEETT--EEEEEEE
T ss_pred             EeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCC-----HHHHHHHHHHHHHHhcCCCCCeEEEEEecCC--ceEEEEE
Confidence            356788888999999854 6788999876432111     135888999999885 677889999988766  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCC--------------------------------------
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLN--------------------------------------  495 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~--------------------------------------  495 (664)
                      |+++.+|.+.+.       +......++.+++++++.||+..                                      
T Consensus        91 ~i~G~~l~~~~~-------~~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (263)
T 3tm0_A           91 EADGVLCSEEYE-------DEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTP  163 (263)
T ss_dssp             CCSSEEHHHHCC-------TTTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCS
T ss_pred             ecCCeehhhccC-------CcccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhcccccccccccccccc
Confidence            999999877532       11223468889999999999711                                      


Q ss_pred             -------------------CCeEEeCcCCCCeEecCCCceEecccCchh
Q 006019          496 -------------------PPIAHNYLNSSAVHLTEDYAAKLSDLSFWN  525 (664)
Q Consensus       496 -------------------~~ivHrDLk~~NILld~~~~~kl~DfGla~  525 (664)
                                         +.++|+|+++.|||++++..+.|.||+.+.
T Consensus       164 ~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T 3tm0_A          164 FKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             SSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred             CCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence                               348999999999999876667899998754

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.05  E-value=4.5e-10  Score=114.69  Aligned_cols=103  Identities=24%  Similarity=0.340  Sum_probs=93.2

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.+++ +| .+..+++|+.|+|++|.+++.  +.+..+++|+.|+|++|++++.  ..+..+++|+.|+|
T Consensus        90 ~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L  163 (291)
T 1h6t_A           90 KNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSL  163 (291)
T ss_dssp             TTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred             CCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEc
Confidence            589999999999987 44 599999999999999999873  5789999999999999999974  67899999999999


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCcccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g  183 (664)
                      ++|++++..|  +..+++|++|++++|++++
T Consensus       164 ~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          164 EDNQISDIVP--LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             CSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             cCCccccchh--hcCCCccCEEECCCCcCCC
Confidence            9999997655  9999999999999999986

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.04  E-value=6.1e-10  Score=111.92  Aligned_cols=101  Identities=28%  Similarity=0.393  Sum_probs=46.4

Q ss_pred             cEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecc
Q 006019           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~  153 (664)
                      +++.|+|++|+++ .+| .+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|++++ +|... . ++|+.|+|+
T Consensus        42 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~  114 (263)
T 1xeu_A           42 GVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLD  114 (263)
T ss_dssp             TCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECC
T ss_pred             cCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEcc
Confidence            3444555555444 233 34445555555555555543222  4445555555555555543 33221 1 445555555


Q ss_pred             cCcccccCCccccCCCCCCEeeCCCCcccc
Q 006019          154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (664)
Q Consensus       154 ~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g  183 (664)
                      +|++++ +| .+.++++|+.|++++|++++
T Consensus       115 ~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~  142 (263)
T 1xeu_A          115 NNELRD-TD-SLIHLKNLEILSIRNNKLKS  142 (263)
T ss_dssp             SSCCSB-SG-GGTTCTTCCEEECTTSCCCB
T ss_pred             CCccCC-Ch-hhcCcccccEEECCCCcCCC
Confidence            555443 22 34445555555555555443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.03  E-value=5.6e-10  Score=112.22  Aligned_cols=103  Identities=17%  Similarity=0.219  Sum_probs=91.0

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.+++ +++ +..+++|+.|+|++|.+++ +|... . ++|+.|+|++|++++ +| .+..+++|+.|+|
T Consensus        63 ~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~L  135 (263)
T 1xeu_A           63 TNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSI  135 (263)
T ss_dssp             TTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEccCCccCC-Ch-hhcCcccccEEEC
Confidence            589999999999997 444 9999999999999999986 55433 3 899999999999997 44 6999999999999


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  184 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~  184 (664)
                      ++|++++. | .+..+++|+.|++++|++++.
T Consensus       136 s~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          136 RNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             TTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred             CCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence            99999964 4 799999999999999999976

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.03  E-value=5.1e-10  Score=125.82  Aligned_cols=106  Identities=23%  Similarity=0.325  Sum_probs=87.4

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.|++..|  +..|++|+.|+|++|.|.+ +| .+..|++|+.|+|++|++++ + +.+..+++|+.|+|
T Consensus        65 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~L  138 (605)
T 1m9s_A           65 PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYL  138 (605)
T ss_dssp             TTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEEC
T ss_pred             CCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEEC
Confidence            578899999998887443  8888999999999998886 44 68888889999999998886 3 45888888888888


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCccccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p  186 (664)
                      ++|++++.  +.++.+++|+.|+|++|++++..|
T Consensus       139 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~  170 (605)
T 1m9s_A          139 GNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  170 (605)
T ss_dssp             CSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred             CCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence            88888865  678888888888888888888766

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.02  E-value=6.1e-10  Score=121.27  Aligned_cols=100  Identities=18%  Similarity=0.287  Sum_probs=72.3

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|++++ +| .++.+++|+.|+|++|.+++ +|  ++.+++|++|+|++|++++ +|  ++.+++|++|++
T Consensus        42 ~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L  113 (457)
T 3bz5_A           42 ATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNC  113 (457)
T ss_dssp             TTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEEC
Confidence            467777777777776 34 57777777777777777776 34  6777777777777777776 33  677777777777


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCcccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g  183 (664)
                      ++|++++ +|  ++++++|++|++++|++++
T Consensus       114 ~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~  141 (457)
T 3bz5_A          114 DTNKLTK-LD--VSQNPLLTYLNCARNTLTE  141 (457)
T ss_dssp             CSSCCSC-CC--CTTCTTCCEEECTTSCCSC
T ss_pred             CCCcCCe-ec--CCCCCcCCEEECCCCccce
Confidence            7777776 44  6777777777777777776

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.02  E-value=5e-10  Score=115.35  Aligned_cols=106  Identities=23%  Similarity=0.349  Sum_probs=92.4

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.+++ + +.+..+++|+.|+|++|.+++ +|. +..+++|+.|+|++|++++. |. ++.+++|+.|+|
T Consensus        85 ~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l  158 (308)
T 1h6u_A           85 TKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSI  158 (308)
T ss_dssp             CSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEEC
T ss_pred             CCCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEc
Confidence            589999999999986 4 479999999999999999987 443 89999999999999999964 43 889999999999


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCccccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p  186 (664)
                      ++|++++ +|+ +.++++|+.|++++|++++..+
T Consensus       159 ~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~  190 (308)
T 1h6u_A          159 GNAQVSD-LTP-LANLSKLTTLKADDNKISDISP  190 (308)
T ss_dssp             CSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred             cCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh
Confidence            9999986 444 8999999999999999987544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.02  E-value=6.7e-10  Score=124.84  Aligned_cols=107  Identities=23%  Similarity=0.319  Sum_probs=91.5

Q ss_pred             CCcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceee
Q 006019           72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (664)
Q Consensus        72 ~~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~  151 (664)
                      ..++..|+|++|.|++ + +.+..|++|+.|+|++|.+++ + +.+..|++|+.|+|++|++++.  ..+..+++|+.|+
T Consensus        86 l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~  159 (605)
T 1m9s_A           86 LKNLGWLFLDENKIKD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLS  159 (605)
T ss_dssp             CTTCCEEECCSSCCCC-C-TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEE
T ss_pred             CCCCCEEECcCCCCCC-C-hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEE
Confidence            3578999999999986 3 378999999999999999986 3 4688999999999999999974  6788999999999


Q ss_pred             cccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       152 l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      |++|.+++..|  +..+++|+.|+|++|+|++. |.
T Consensus       160 Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~  192 (605)
T 1m9s_A          160 LEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RA  192 (605)
T ss_dssp             CCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GG
T ss_pred             CcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hH
Confidence            99999997766  88999999999999999873 44

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.00  E-value=1.5e-10  Score=130.29  Aligned_cols=111  Identities=22%  Similarity=0.253  Sum_probs=79.6

Q ss_pred             CCCCCCccceeEe--------cCCcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEee
Q 006019           58 TENNPCSWFGVEC--------SDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFG  129 (664)
Q Consensus        58 ~~~~~C~w~gv~C--------~~~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~  129 (664)
                      .+.+||.|.|..|        ...+++.|++++|+|+ .+|..+.  ++|+.|+|++|.|+ .+|.   .+++|++|+|+
T Consensus        17 ~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls   89 (622)
T 3g06_A           17 RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVS   89 (622)
T ss_dssp             HTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred             hcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcC
Confidence            5567899977533        2346888999998888 7887665  78888888888887 5665   46788888888


Q ss_pred             cCcccccCCccccCCcccceeecccCcccccCCccccCCCCCCEeeCCCCcccc
Q 006019          130 HNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (664)
Q Consensus       130 ~N~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g  183 (664)
                      +|+++ .+|.   .+++|++|+|++|++++ +|.   .+++|+.|++++|++++
T Consensus        90 ~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~  135 (622)
T 3g06_A           90 GNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS  135 (622)
T ss_dssp             SCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC
T ss_pred             CCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc
Confidence            88887 4665   56777777777777774 444   44556666666666554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.99  E-value=6.3e-11  Score=123.47  Aligned_cols=111  Identities=18%  Similarity=0.179  Sum_probs=82.3

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCccccc-CCcccCCCCCCCEEEeecCcccccCCccccCCcccceee
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGI-IPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~-ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~  151 (664)
                      .+++.|++++|.+.+..+. +..+++|+.|+|++|.+++. +|..+..+++|++|+|++|++++.+|..++.+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            4567777777777765543 56777888888888877765 777777778888888888877777777777778888888


Q ss_pred             cccC-cccc-cCCccccCCCCCCEeeCCCC-ccccc
Q 006019          152 LDNN-DFVG-SLSPEIYKLQVLSESQVDEG-QLSSA  184 (664)
Q Consensus       152 l~~N-~~~g-~iP~~~~~l~~L~~l~l~~n-~l~g~  184 (664)
                      |++| .+++ .+|..+.++++|++|++++| ++++.
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~  184 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK  184 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH
Confidence            8877 5766 36666777778888888887 77754

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.98  E-value=1.4e-10  Score=120.81  Aligned_cols=117  Identities=13%  Similarity=0.111  Sum_probs=83.2

Q ss_pred             CccceeEecCCcEEEEEeCCCCccccccccccCC--CCCCEEEccCCcccccCCcccCCCCCCCEEEeecCccccc-CCc
Q 006019           63 CSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSL--THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP-LPN  139 (664)
Q Consensus        63 C~w~gv~C~~~~v~~l~L~~~~l~g~ip~~~~~l--~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~-ip~  139 (664)
                      .+|.++.|+...++.++++++.+.   +..+..+  +.++.|++++|.+.+.+|. +..+++|++|+|++|++++. +|.
T Consensus        37 ~~W~~~~~~~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~  112 (336)
T 2ast_B           37 KRWYRLASDESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHG  112 (336)
T ss_dssp             HHHHHHHTCSTTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHH
T ss_pred             HHHHHHhcCchhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHH
Confidence            357777776556777777777665   3445555  6777777777777766554 45677777777777777765 676


Q ss_pred             cccCCcccceeecccCcccccCCccccCCCCCCEeeCCCC-cccc
Q 006019          140 DLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEG-QLSS  183 (664)
Q Consensus       140 ~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n-~l~g  183 (664)
                      .+..+++|++|+|++|.+++.+|..++++++|++|++++| .+++
T Consensus       113 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~  157 (336)
T 2ast_B          113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE  157 (336)
T ss_dssp             HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH
T ss_pred             HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH
Confidence            7777777777777777777777777777777777777777 5665

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=98.98  E-value=1.8e-09  Score=107.81  Aligned_cols=130  Identities=11%  Similarity=0.088  Sum_probs=95.6

Q ss_pred             ccc-cCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCc--ccceEEEEecCCCceeEEEEE
Q 006019          377 VIG-SSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN--FVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       377 ~iG-~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~n--iv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .++ .|..+.||+....+|..+++|......        ...+.+|+++++.+++.+  +.+++++....+  ..++|||
T Consensus        26 ~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~~--------~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~--~~~~v~e   95 (264)
T 1nd4_A           26 QQTIGCSDAAVFRLSAQGRPVLFVKTDLSGA--------LNELQDEAARLSWLATTGVPCAAVLDVVTEAG--RDWLLLG   95 (264)
T ss_dssp             ECSCTTSSCEEEEEECTTSCCEEEEEECSCT--------TSCHHHHHHHHHHHHTTTCCBCCEEEEEECSS--CEEEEEE
T ss_pred             ecccCCCCceEEEEecCCCCeEEEEeCCccc--------chhhhHHHHHHHHHHhCCCCCCeEEEeccCCC--CCEEEEE
Confidence            344 555699999988778889999864321        134778999999886545  456888877655  5699999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCC--------------------------------------
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLN--------------------------------------  495 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~--------------------------------------  495 (664)
                      |+++.+|.  ...     .+   ...++.++++.++.||+..                                      
T Consensus        96 ~i~G~~l~--~~~-----~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (264)
T 1nd4_A           96 EVPGQDLL--SSH-----LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGL  165 (264)
T ss_dssp             CCSSEETT--TSC-----CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTC
T ss_pred             ecCCcccC--cCc-----CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCc
Confidence            99998884  211     11   2356778888888888643                                      


Q ss_pred             ------------------CCeEEeCcCCCCeEecCCCceEecccCchhh
Q 006019          496 ------------------PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  526 (664)
Q Consensus       496 ------------------~~ivHrDLk~~NILld~~~~~kl~DfGla~~  526 (664)
                                        +.++|+|++|.||+++++..++|.|||.+..
T Consensus       166 ~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~  214 (264)
T 1nd4_A          166 APAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV  214 (264)
T ss_dssp             CHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             cHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence                              1299999999999998877778999997643

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.98  E-value=1.1e-09  Score=112.73  Aligned_cols=106  Identities=24%  Similarity=0.378  Sum_probs=93.8

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.+++ +++ +..+++|+.|+|++|.+++ +| .+..+++|+.|+|++|++++ +|. +..+++|+.|+|
T Consensus        63 ~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l  136 (308)
T 1h6u_A           63 NNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYL  136 (308)
T ss_dssp             TTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEEC
Confidence            589999999999986 444 9999999999999999986 44 79999999999999999997 554 899999999999


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCccccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p  186 (664)
                      ++|++++..+  +.++++|++|++++|++++..+
T Consensus       137 ~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~  168 (308)
T 1h6u_A          137 DLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP  168 (308)
T ss_dssp             CSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG
T ss_pred             CCCccCcCcc--ccCCCCccEEEccCCcCCCChh
Confidence            9999986544  8999999999999999997543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.98  E-value=8.4e-10  Score=120.17  Aligned_cols=106  Identities=13%  Similarity=0.099  Sum_probs=83.2

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.+++ +|  ++.+++|+.|+|++|.+++.   .++.+++|+.|+|++|++++ +|  ++.+++|+.|++
T Consensus       170 ~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l  240 (457)
T 3bz5_A          170 TQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDC  240 (457)
T ss_dssp             TTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEEC
T ss_pred             CcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEe
Confidence            468888999998887 55  78888888888888888874   37888888888888888887 66  778888888888


Q ss_pred             ccCcccccCCccccCCC-------CCCEeeCCCCcccccccc
Q 006019          153 DNNDFVGSLSPEIYKLQ-------VLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~-------~L~~l~l~~n~l~g~~p~  187 (664)
                      ++|+++|..+..+.+++       +|+.|++++|.+.|.+|.
T Consensus       241 ~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~  282 (457)
T 3bz5_A          241 SVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA  282 (457)
T ss_dssp             CSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC
T ss_pred             eCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccc
Confidence            88888876555555554       566777777777777773

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.97  E-value=1e-09  Score=114.78  Aligned_cols=104  Identities=18%  Similarity=0.290  Sum_probs=47.8

Q ss_pred             cEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecc
Q 006019           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~  153 (664)
                      ++..+++++|.+.+..+  +..+++|+.|+|++|.+++..+  +..+++|+.|++++|++++ + +.+..+++|+.|+++
T Consensus       200 ~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~  273 (347)
T 4fmz_A          200 SLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVG  273 (347)
T ss_dssp             TCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECC
T ss_pred             ccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEcc
Confidence            44455555555443222  4445555555555555543222  4444555555555554443 2 234444445555555


Q ss_pred             cCcccccCCccccCCCCCCEeeCCCCcccccc
Q 006019          154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAA  185 (664)
Q Consensus       154 ~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~  185 (664)
                      +|++++.  +.+..+++|+.|++++|++++..
T Consensus       274 ~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~  303 (347)
T 4fmz_A          274 SNQISDI--SVLNNLSQLNSLFLNNNQLGNED  303 (347)
T ss_dssp             SSCCCCC--GGGGGCTTCSEEECCSSCCCGGG
T ss_pred             CCccCCC--hhhcCCCCCCEEECcCCcCCCcC
Confidence            5544432  23444444555555554444433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.97  E-value=1e-10  Score=124.62  Aligned_cols=115  Identities=20%  Similarity=0.246  Sum_probs=94.6

Q ss_pred             CcEEEEEeCCCCcc-cccc---ccccCCCCCCEEEccCCccc--c---cCCcccCCCCCCCEEEeecCccc----ccCCc
Q 006019           73 GKVVNLNLKDLCLE-GTLA---PEIQSLTHIKSIILRNNSFS--G---IIPEGFGELEELEVLDFGHNNFS----GPLPN  139 (664)
Q Consensus        73 ~~v~~l~L~~~~l~-g~ip---~~~~~l~~L~~l~L~~N~l~--g---~ip~~~~~l~~L~~L~l~~N~l~----g~ip~  139 (664)
                      .+++.|+|++|+++ +.++   ..+..+++|+.|+|++|.++  |   .+|..+..+++|+.|+|++|+++    +.+|.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            58899999999987 5555   46778889999999999888  4   35557888899999999999986    77888


Q ss_pred             cccCCcccceeecccCccccc----CCccc--cCCCCCCEeeCCCCcccc----cccc
Q 006019          140 DLGINHSLTILLLDNNDFVGS----LSPEI--YKLQVLSESQVDEGQLSS----AAKK  187 (664)
Q Consensus       140 ~~~~~~~L~~l~l~~N~~~g~----iP~~~--~~l~~L~~l~l~~n~l~g----~~p~  187 (664)
                      .+..+++|+.|+|++|.+++.    +|..+  +++++|++|+|++|++++    .+|.
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~  296 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT  296 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH
Confidence            888889999999999998876    67777  448899999999999988    4664

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.96  E-value=7.6e-10  Score=115.79  Aligned_cols=108  Identities=19%  Similarity=0.305  Sum_probs=98.2

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.+++. ++ +..+++|+.|+|++|.+++ + +.+..+++|++|++++|++++ + +.+..+++|+.|++
T Consensus       221 ~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L  294 (347)
T 4fmz_A          221 TRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFL  294 (347)
T ss_dssp             TTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEEC
T ss_pred             CcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEEC
Confidence            5799999999999864 44 9999999999999999986 3 468999999999999999997 4 46889999999999


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCccccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p  186 (664)
                      ++|.+++..|..+.++++|++|++++|++++..|
T Consensus       295 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             CSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             cCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence            9999999999999999999999999999998777

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.96  E-value=2.3e-09  Score=116.58  Aligned_cols=79  Identities=23%  Similarity=0.363  Sum_probs=47.8

Q ss_pred             CCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecccCcccccCCccccCCCCCCEeeC
Q 006019           97 THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQV  176 (664)
Q Consensus        97 ~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l  176 (664)
                      ++|+.|+|++|.+++ +| .++++++|++|++++|++++ +|..+   .+|++|++++|++++ +| .++++++|++|++
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l  202 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA  202 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence            466666666666665 55 46666666666666666664 55432   356666666666665 44 4566666666666


Q ss_pred             CCCcccc
Q 006019          177 DEGQLSS  183 (664)
Q Consensus       177 ~~n~l~g  183 (664)
                      ++|++++
T Consensus       203 ~~N~l~~  209 (454)
T 1jl5_A          203 DNNSLKK  209 (454)
T ss_dssp             CSSCCSS
T ss_pred             CCCcCCc
Confidence            6666654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.95  E-value=1.2e-09  Score=119.30  Aligned_cols=104  Identities=21%  Similarity=0.286  Sum_probs=86.2

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.+++..+  +..+++|+.|+|++|.+++..|  +..+++|+.|+|++|++++..|  ++.+++|+.|+|
T Consensus       243 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L  316 (466)
T 1o6v_A          243 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTL  316 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEEC
T ss_pred             CCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEEC
Confidence            478899999999887554  8888999999999999887544  7888899999999999887443  778888999999


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  184 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~  184 (664)
                      ++|++++..|  +..+++|+.|++++|++++.
T Consensus       317 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~  346 (466)
T 1o6v_A          317 YFNNISDISP--VSSLTKLQRLFFYNNKVSDV  346 (466)
T ss_dssp             CSSCCSCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred             cCCcCCCchh--hccCccCCEeECCCCccCCc
Confidence            9998887766  77888888888888888875

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.94  E-value=3.2e-09  Score=111.76  Aligned_cols=143  Identities=10%  Similarity=0.116  Sum_probs=104.8

Q ss_pred             cccccCCCeEEEEEEECCCcEEEEEEee--ecccCCCchhHHHHHHHHHHHHhccC--CCcccceEEEEecCCC-ceeEE
Q 006019          376 NVIGSSPIGTVYKGTLSNGVEIAVASVS--VASAKDWPKNLEVQFRKKIDTLSKVN--HKNFVNLIGFCEEEEP-FTRMM  450 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~~~~vavk~~~--~~~~~~~~~~~~~~f~~E~~~l~~l~--H~niv~l~g~~~~~~~-~~~~l  450 (664)
                      +.++.|.++.||+....+ ..+++|+..  .....    .....+.+|+++++.++  +..+.++++++.+... ...++
T Consensus        44 ~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~~----~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~  118 (359)
T 3dxp_A           44 EQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKLL----PSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFY  118 (359)
T ss_dssp             EECCC-CCSCEEEEECSS-CEEEEECCCC--------------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEE
T ss_pred             EEcCCcccceEEEEEECC-ceEEEEeCCCCCCCCC----CcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEE
Confidence            568999999999998765 567777654  22111    12346788999999987  4568889999876531 13689


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcC------------------------------------
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL------------------------------------  494 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~------------------------------------  494 (664)
                      ||||+++..+.+..    ...++...+..++.++++.|+.||+.                                    
T Consensus       119 vme~v~G~~l~~~~----~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (359)
T 3dxp_A          119 IMEFVSGRVLWDQS----LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESI  194 (359)
T ss_dssp             EEECCCCBCCCCTT----CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCC
T ss_pred             EEEecCCeecCCCc----cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCC
Confidence            99999998875422    23477888899999999999999963                                    


Q ss_pred             --------------------CCCeEEeCcCCCCeEecCCCc--eEecccCchhhh
Q 006019          495 --------------------NPPIAHNYLNSSAVHLTEDYA--AKLSDLSFWNEI  527 (664)
Q Consensus       495 --------------------~~~ivHrDLk~~NILld~~~~--~kl~DfGla~~~  527 (664)
                                          .+.++|+|+++.|||++.++.  +.|.||+.+...
T Consensus       195 ~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~g  249 (359)
T 3dxp_A          195 PAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTLG  249 (359)
T ss_dssp             HHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEEE
T ss_pred             hHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECccccccC
Confidence                                245999999999999997753  689999987643

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.92  E-value=9.9e-10  Score=119.51  Aligned_cols=103  Identities=23%  Similarity=0.290  Sum_probs=72.7

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccc--cCCcccC-------------CC-CCCCEEEeecCccccc
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSG--IIPEGFG-------------EL-EELEVLDFGHNNFSGP  136 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g--~ip~~~~-------------~l-~~L~~L~l~~N~l~g~  136 (664)
                      .+++.|+|++|.+++ +|..   +++|+.|+|++|.+++  .+|..+.             .+ ++|+.|++++|++++ 
T Consensus       257 ~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-  331 (454)
T 1jl5_A          257 PSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-  331 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-
T ss_pred             cccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-
Confidence            356667777776665 4432   2556666666666665  3332221             22 578888888888886 


Q ss_pred             CCccccCCcccceeecccCcccccCCccccCCCCCCEeeCCCCcccc--cccc
Q 006019          137 LPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS--AAKK  187 (664)
Q Consensus       137 ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g--~~p~  187 (664)
                      +|..   +++|+.|++++|+++ .+|.   .+++|++|++++|+++|  .+|.
T Consensus       332 lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~  377 (454)
T 1jl5_A          332 LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPE  377 (454)
T ss_dssp             CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCT
T ss_pred             cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChH
Confidence            7764   578999999999998 5787   47889999999999998  7775

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.91  E-value=1.5e-09  Score=118.50  Aligned_cols=106  Identities=23%  Similarity=0.302  Sum_probs=95.6

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.+++.. + +..+++|+.|+|++|.+.+..|  ++.+++|+.|+|++|++++..|  +..+++|+.|++
T Consensus       265 ~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l  338 (466)
T 1o6v_A          265 TKLTELKLGANQISNIS-P-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF  338 (466)
T ss_dssp             TTCSEEECCSSCCCCCG-G-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEEC
T ss_pred             CCCCEEECCCCccCccc-c-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeEC
Confidence            47899999999999744 3 8999999999999999997554  8899999999999999998766  789999999999


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCccccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p  186 (664)
                      ++|.+++.  +.+.++++|+.|++++|++++.+|
T Consensus       339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             CSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred             CCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence            99999975  579999999999999999999887

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.91  E-value=2e-09  Score=121.15  Aligned_cols=58  Identities=24%  Similarity=0.242  Sum_probs=32.3

Q ss_pred             CCCCEEEeecCcccccCCccccCCcccceeecccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          121 EELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       121 ~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      ++|+.|+|++|++++ +|   ..+++|+.|+|++|+++ .||.   .+++|+.|+|++|+|+ .+|.
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~  278 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPE  278 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCG
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCH
Confidence            455666666666654 44   33455666666666665 4554   4455666666666665 4443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.90  E-value=2.8e-10  Score=121.19  Aligned_cols=113  Identities=24%  Similarity=0.324  Sum_probs=99.1

Q ss_pred             CCcEEEEEeCCCCccc----cccccccCC---------CCCCEEEccCCccc-ccCC---cccCCCCCCCEEEeecCccc
Q 006019           72 DGKVVNLNLKDLCLEG----TLAPEIQSL---------THIKSIILRNNSFS-GIIP---EGFGELEELEVLDFGHNNFS  134 (664)
Q Consensus        72 ~~~v~~l~L~~~~l~g----~ip~~~~~l---------~~L~~l~L~~N~l~-g~ip---~~~~~l~~L~~L~l~~N~l~  134 (664)
                      ..+++.|+|++|.+++    .++..+..+         ++|+.|+|++|.++ +.+|   ..+..+++|+.|+|++|+++
T Consensus       121 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  200 (386)
T 2ca6_A          121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR  200 (386)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCC
T ss_pred             CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence            4689999999999973    356667777         89999999999998 5666   57788999999999999998


Q ss_pred             --c---cCCccccCCcccceeecccCccc----ccCCccccCCCCCCEeeCCCCccccc
Q 006019          135 --G---PLPNDLGINHSLTILLLDNNDFV----GSLSPEIYKLQVLSESQVDEGQLSSA  184 (664)
Q Consensus       135 --g---~ip~~~~~~~~L~~l~l~~N~~~----g~iP~~~~~l~~L~~l~l~~n~l~g~  184 (664)
                        |   .+|..+..+++|+.|+|++|.++    +.+|..+.++++|++|+|++|++++.
T Consensus       201 ~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~  259 (386)
T 2ca6_A          201 PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR  259 (386)
T ss_dssp             HHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred             HhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh
Confidence              4   45558889999999999999997    78999999999999999999999876

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.89  E-value=2e-09  Score=112.88  Aligned_cols=116  Identities=16%  Similarity=0.133  Sum_probs=75.3

Q ss_pred             CccceeEecCC-----------cEEEEEeCCCCccccccc-cccCCCCCCEEEccCCcccccCCc-ccCCCCCCCE-EEe
Q 006019           63 CSWFGVECSDG-----------KVVNLNLKDLCLEGTLAP-EIQSLTHIKSIILRNNSFSGIIPE-GFGELEELEV-LDF  128 (664)
Q Consensus        63 C~w~gv~C~~~-----------~v~~l~L~~~~l~g~ip~-~~~~l~~L~~l~L~~N~l~g~ip~-~~~~l~~L~~-L~l  128 (664)
                      |+|..|.|++.           +++.|+|++|+|+. ||+ .+.+|++|+.|+|++|.+.+.+|. .|.++++|.. +.+
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~-i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSE-ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCC-cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            78999999632           45677777777763 443 467777777777777777666654 3566666554 555


Q ss_pred             ecCcccccCCccccCCcccceeecccCcccccCCccccCCCCCCEeeCCCC
Q 006019          129 GHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEG  179 (664)
Q Consensus       129 ~~N~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n  179 (664)
                      +.|+++...|..+..+++|++|++++|++++..+..+....++..+++.++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~  138 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN  138 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc
Confidence            567777655666677777777777777776555545555555666666543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.88  E-value=2.5e-09  Score=112.00  Aligned_cols=86  Identities=14%  Similarity=0.039  Sum_probs=78.2

Q ss_pred             CEEEccCC-cccccCCcccCCCCCCCEEEeec-CcccccCCccccCCcccceeecccCcccccCCccccCCCCCCEeeCC
Q 006019          100 KSIILRNN-SFSGIIPEGFGELEELEVLDFGH-NNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVD  177 (664)
Q Consensus       100 ~~l~L~~N-~l~g~ip~~~~~l~~L~~L~l~~-N~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~  177 (664)
                      ..++++++ .|++ ||. |+.+++|+.|+|++ |+|++..|..|+++++|+.|+|++|+|+|..|..|.++++|++|+|+
T Consensus        11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35789988 8985 898 99999999999996 99998777889999999999999999999999999999999999999


Q ss_pred             CCcccccccc
Q 006019          178 EGQLSSAAKK  187 (664)
Q Consensus       178 ~n~l~g~~p~  187 (664)
                      +|+|++..+.
T Consensus        89 ~N~l~~~~~~   98 (347)
T 2ifg_A           89 FNALESLSWK   98 (347)
T ss_dssp             SSCCSCCCST
T ss_pred             CCccceeCHH
Confidence            9999975554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.83  E-value=9.6e-10  Score=115.97  Aligned_cols=110  Identities=19%  Similarity=0.181  Sum_probs=57.4

Q ss_pred             cEEEEEeCCCCcccccc----ccccCCC-CCCEEEccCCcccccCCcccCCC-----CCCCEEEeecCcccccCCccccC
Q 006019           74 KVVNLNLKDLCLEGTLA----PEIQSLT-HIKSIILRNNSFSGIIPEGFGEL-----EELEVLDFGHNNFSGPLPNDLGI  143 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip----~~~~~l~-~L~~l~L~~N~l~g~ip~~~~~l-----~~L~~L~l~~N~l~g~ip~~~~~  143 (664)
                      +++.|+|++|.+++.-+    ..+..++ +|+.|+|++|.+++..+..+..+     ++|++|+|++|++++..+..+..
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  102 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK  102 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence            35556666555554433    3445555 56666666665555544444443     55666666666655544443322


Q ss_pred             ----C-cccceeecccCcccccCCcccc----C-CCCCCEeeCCCCcccc
Q 006019          144 ----N-HSLTILLLDNNDFVGSLSPEIY----K-LQVLSESQVDEGQLSS  183 (664)
Q Consensus       144 ----~-~~L~~l~l~~N~~~g~iP~~~~----~-l~~L~~l~l~~n~l~g  183 (664)
                          + ++|+.|+|++|++++..+..++    . .++|++|+|++|++++
T Consensus       103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  152 (362)
T 3goz_A          103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI  152 (362)
T ss_dssp             HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred             HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence                2 5556666666665544443332    2 2455666666665553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.82  E-value=2.2e-10  Score=114.29  Aligned_cols=125  Identities=17%  Similarity=0.145  Sum_probs=89.1

Q ss_pred             CCCccceeEecCC--cEEEEEeCC---CCcccccccc------------------------ccCCCCCCE--EEccCC--
Q 006019           61 NPCSWFGVECSDG--KVVNLNLKD---LCLEGTLAPE------------------------IQSLTHIKS--IILRNN--  107 (664)
Q Consensus        61 ~~C~w~gv~C~~~--~v~~l~L~~---~~l~g~ip~~------------------------~~~l~~L~~--l~L~~N--  107 (664)
                      ..|+|.|+.|+..  +|+.+-..+   ..+.|.++++                        +...+.|..  ++++.|  
T Consensus        76 ~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~  155 (267)
T 3rw6_A           76 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRR  155 (267)
T ss_dssp             HHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHHHHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSH
T ss_pred             HHHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHHHHHhccchhccccCHHHcCCCcchhhcCccccCCHH
Confidence            3578999999853  676655544   2344555431                        222223333  455666  


Q ss_pred             -cccccCCcccCCCCCCCEEEeecCcccc--cCCccccCCcccceeecccCcccccCCccccCCC--CCCEeeCCCCccc
Q 006019          108 -SFSGIIPEGFGELEELEVLDFGHNNFSG--PLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQ--VLSESQVDEGQLS  182 (664)
Q Consensus       108 -~l~g~ip~~~~~l~~L~~L~l~~N~l~g--~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~--~L~~l~l~~n~l~  182 (664)
                       .+.+.++....++++|+.|+|++|++++  .+|..+..+++|+.|+|++|++++.  .++..+.  +|++|+|++|.++
T Consensus       156 ~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~  233 (267)
T 3rw6_A          156 SCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC  233 (267)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred             HHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCc
Confidence             3334333333568899999999999998  7788888999999999999999975  4455555  9999999999999


Q ss_pred             ccccc
Q 006019          183 SAAKK  187 (664)
Q Consensus       183 g~~p~  187 (664)
                      +.+|.
T Consensus       234 ~~~~~  238 (267)
T 3rw6_A          234 DTFRD  238 (267)
T ss_dssp             GGCSS
T ss_pred             cccCc
Confidence            98874

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.78  E-value=1.4e-09  Score=114.71  Aligned_cols=105  Identities=17%  Similarity=0.104  Sum_probs=45.3

Q ss_pred             EeCCCCccccccccccCCCCCCEEEccCCcccccCC----cccCCCC-CCCEEEeecCcccccCCccccCC-----cccc
Q 006019           79 NLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIP----EGFGELE-ELEVLDFGHNNFSGPLPNDLGIN-----HSLT  148 (664)
Q Consensus        79 ~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip----~~~~~l~-~L~~L~l~~N~l~g~ip~~~~~~-----~~L~  148 (664)
                      +|+.|+++|.+|..+...++|+.|+|++|.+++..+    ..+..++ +|++|+|++|++++..+..+..+     ++|+
T Consensus         4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~   83 (362)
T 3goz_A            4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT   83 (362)
T ss_dssp             ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred             ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence            344444444444444444444444444444443333    3334444 44444444444444433333332     4444


Q ss_pred             eeecccCcccccCCccccC----C-CCCCEeeCCCCcccc
Q 006019          149 ILLLDNNDFVGSLSPEIYK----L-QVLSESQVDEGQLSS  183 (664)
Q Consensus       149 ~l~l~~N~~~g~iP~~~~~----l-~~L~~l~l~~n~l~g  183 (664)
                      +|+|++|.+++..+..++.    + ++|++|+|++|++++
T Consensus        84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  123 (362)
T 3goz_A           84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS  123 (362)
T ss_dssp             EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred             EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence            4444444444433332222    1 444444444444443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.67  E-value=3.4e-08  Score=103.52  Aligned_cols=107  Identities=8%  Similarity=0.076  Sum_probs=90.6

Q ss_pred             EEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCc-cccCCcccce-eeccc
Q 006019           77 NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN-DLGINHSLTI-LLLDN  154 (664)
Q Consensus        77 ~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~-~~~~~~~L~~-l~l~~  154 (664)
                      .++-++++|+ .||..+  .++++.|+|++|.|+...+..|.++++|++|+|++|++.+.+|. .|.++++|+. +.++.
T Consensus        13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            4567888888 688766  46899999999999954445799999999999999999888886 4678888765 67788


Q ss_pred             CcccccCCccccCCCCCCEeeCCCCccccccc
Q 006019          155 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (664)
Q Consensus       155 N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p  186 (664)
                      |++++..|..+..+++|++|++++|++++..+
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~  121 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPD  121 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred             CcccccCchhhhhccccccccccccccccCCc
Confidence            99998778889999999999999999987544

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.60  E-value=3.9e-08  Score=100.89  Aligned_cols=178  Identities=10%  Similarity=0.118  Sum_probs=115.7

Q ss_pred             cccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCc--ccceEEEEecCCC-ceeEEE
Q 006019          376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKN--FVNLIGFCEEEEP-FTRMMV  451 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~n--iv~l~g~~~~~~~-~~~~lV  451 (664)
                      +.++.|....||+..    ..+++|....       ......+.+|.++|+.+. +..  +.+.+++....+. ...++|
T Consensus        26 ~~~~~G~~n~v~~v~----~~~vlR~~~~-------~~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~v   94 (304)
T 3sg8_A           26 EISGEGNDCIAYEIN----RDFIFKFPKH-------SRGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAG   94 (304)
T ss_dssp             CEEEECSSEEEEEST----TSEEEEEESS-------HHHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEE
T ss_pred             EecCCCCcceEEEEC----CEEEEEecCC-------cchHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEE
Confidence            458999999999863    4577776531       123467899999998884 333  3455555433221 134789


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcC-------------------------------------
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL-------------------------------------  494 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~-------------------------------------  494 (664)
                      |||+++..|.+...    ..++..++..++.++++.++.||+.                                     
T Consensus        95 m~~i~G~~l~~~~~----~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (304)
T 3sg8_A           95 FTKIKGVPLTPLLL----NNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQM  170 (304)
T ss_dssp             EECCCCEECCHHHH----HTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHH
T ss_pred             EcccCCeECCcccc----ccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccH
Confidence            99999988865322    2356666777777777777777741                                     


Q ss_pred             -------------------CCCeEEeCcCCCCeEecC--CCceEecccCchhhhhhhh----hhc----ccc--------
Q 006019          495 -------------------NPPIAHNYLNSSAVHLTE--DYAAKLSDLSFWNEIAMAE----MAA----TSK--------  537 (664)
Q Consensus       495 -------------------~~~ivHrDLk~~NILld~--~~~~kl~DfGla~~~~~~~----~~~----~~p--------  537 (664)
                                         .+.++|+|+++.||++++  +..+.|.||+.+.......    ...    ..+        
T Consensus       171 ~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~  250 (304)
T 3sg8_A          171 KKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILN  250 (304)
T ss_dssp             HHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHH
Confidence                               134899999999999998  5568899998765432110    000    000        


Q ss_pred             cccCCC--C----CCcCCcchhhHHHHHHHHhCCCCc
Q 006019          538 KLSSAP--S----ASLESNVYNFGVLLFEMVTGRLPY  568 (664)
Q Consensus       538 e~~~~~--~----~s~ksDVySfGvvl~El~tG~~P~  568 (664)
                      .|....  .    .....+.|++|+++|++.+|+.+|
T Consensus       251 ~Y~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~g~~~~  287 (304)
T 3sg8_A          251 HYKHKDIPTVLEKYRMKEKYWSFEKIIYGKEYGYMDW  287 (304)
T ss_dssp             HHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence            010000  0    011258999999999999999887

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.58  E-value=4.4e-09  Score=114.43  Aligned_cols=115  Identities=17%  Similarity=0.148  Sum_probs=89.6

Q ss_pred             CcEEEEEeCCCCcccc----ccccccCCCCCCEEEccCCcccccCCcccCC-----CCCCCEEEeecCccccc----CCc
Q 006019           73 GKVVNLNLKDLCLEGT----LAPEIQSLTHIKSIILRNNSFSGIIPEGFGE-----LEELEVLDFGHNNFSGP----LPN  139 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~----ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~-----l~~L~~L~l~~N~l~g~----ip~  139 (664)
                      .+++.|+|++|.+++.    ++..+..+++|+.|+|++|.+++..+..+..     .++|+.|+|++|.+++.    +|.
T Consensus       256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~  335 (461)
T 1z7x_W          256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS  335 (461)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH
Confidence            5789999999998865    6777888999999999999987654444332     36889999999988875    566


Q ss_pred             cccCCcccceeecccCcccccCCccccC-----CCCCCEeeCCCCcccc----cccc
Q 006019          140 DLGINHSLTILLLDNNDFVGSLSPEIYK-----LQVLSESQVDEGQLSS----AAKK  187 (664)
Q Consensus       140 ~~~~~~~L~~l~l~~N~~~g~iP~~~~~-----l~~L~~l~l~~n~l~g----~~p~  187 (664)
                      .+..+++|+.|+|++|.+++..+..+++     .++|++|++++|++++    .+|.
T Consensus       336 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~  392 (461)
T 1z7x_W          336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  392 (461)
T ss_dssp             HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence            6777888999999999888766655543     6788899999998886    5554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.54  E-value=4.1e-09  Score=114.72  Aligned_cols=114  Identities=16%  Similarity=0.196  Sum_probs=94.5

Q ss_pred             CcEEEEEeCCCCccccc----ccc-ccCCCCCCEEEccCCccccc----CCcccCCCCCCCEEEeecCcccccCCccccC
Q 006019           73 GKVVNLNLKDLCLEGTL----APE-IQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGPLPNDLGI  143 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~i----p~~-~~~l~~L~~l~L~~N~l~g~----ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~  143 (664)
                      .+++.|+|++|.+++.-    .+. ...+++|+.|+|++|.+++.    +|..+..+++|++|+|++|.+++.-+..+..
T Consensus       227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~  306 (461)
T 1z7x_W          227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE  306 (461)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHH
Confidence            58999999999987642    233 33689999999999999875    7888888999999999999998765544433


Q ss_pred             -----CcccceeecccCccccc----CCccccCCCCCCEeeCCCCccccccc
Q 006019          144 -----NHSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLSSAAK  186 (664)
Q Consensus       144 -----~~~L~~l~l~~N~~~g~----iP~~~~~l~~L~~l~l~~n~l~g~~p  186 (664)
                           .++|+.|+|++|.+++.    +|..+.++++|++|++++|++++..+
T Consensus       307 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~  358 (461)
T 1z7x_W          307 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV  358 (461)
T ss_dssp             HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred             HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH
Confidence                 36999999999999876    67788899999999999999987644

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.48  E-value=3.1e-08  Score=98.76  Aligned_cols=81  Identities=17%  Similarity=0.224  Sum_probs=69.5

Q ss_pred             cCCCCCCEEEccCCcccc--cCCcccCCCCCCCEEEeecCcccccCCccccCCc--ccceeecccCcccccCCc------
Q 006019           94 QSLTHIKSIILRNNSFSG--IIPEGFGELEELEVLDFGHNNFSGPLPNDLGINH--SLTILLLDNNDFVGSLSP------  163 (664)
Q Consensus        94 ~~l~~L~~l~L~~N~l~g--~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~--~L~~l~l~~N~~~g~iP~------  163 (664)
                      .++++|+.|+|++|.|++  .+|..+..+++|+.|+|++|++++.  ..+..+.  +|+.|+|++|.+++.+|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            578999999999999998  6788888999999999999999975  4455555  899999999999999884      


Q ss_pred             -cccCCCCCCEeeC
Q 006019          164 -EIYKLQVLSESQV  176 (664)
Q Consensus       164 -~~~~l~~L~~l~l  176 (664)
                       -+..+++|+.||-
T Consensus       245 ~il~~~P~L~~LDg  258 (267)
T 3rw6_A          245 AIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHCTTCCEESS
T ss_pred             HHHHHCcccCeECC
Confidence             2678889888763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.47  E-value=3.1e-08  Score=104.59  Aligned_cols=112  Identities=17%  Similarity=0.150  Sum_probs=85.5

Q ss_pred             CcEEEEEeCCCCccccccccc-cCCCCCCEEEccCCcccccCCccc-----CCCCCCCEEEeecCcccc----cCCcccc
Q 006019           73 GKVVNLNLKDLCLEGTLAPEI-QSLTHIKSIILRNNSFSGIIPEGF-----GELEELEVLDFGHNNFSG----PLPNDLG  142 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~-~~l~~L~~l~L~~N~l~g~ip~~~-----~~l~~L~~L~l~~N~l~g----~ip~~~~  142 (664)
                      .+++.|+|++|.++..-...+ ..+++|+.|+|++|.++..-...+     ...++|+.|+|++|.++.    .++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            589999999999875433333 346688999999999976543333     346789999999999875    3455567


Q ss_pred             CCcccceeecccCcccc----cCCccccCCCCCCEeeCCCCccccc
Q 006019          143 INHSLTILLLDNNDFVG----SLSPEIYKLQVLSESQVDEGQLSSA  184 (664)
Q Consensus       143 ~~~~L~~l~l~~N~~~g----~iP~~~~~l~~L~~l~l~~n~l~g~  184 (664)
                      .+++|++|+|++|.++.    .++..+...++|+.|+|++|+++..
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~  226 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT  226 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence            78899999999999875    3466677888999999999999753

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.32  E-value=7.9e-08  Score=101.43  Aligned_cols=111  Identities=14%  Similarity=0.096  Sum_probs=82.7

Q ss_pred             CcEEEEEeCCCCcccccccccc-----CCCCCCEEEccCCcccccCCccc-CCCCCCCEEEeecCcccccCCccc-----
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQ-----SLTHIKSIILRNNSFSGIIPEGF-GELEELEVLDFGHNNFSGPLPNDL-----  141 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~-----~l~~L~~l~L~~N~l~g~ip~~~-~~l~~L~~L~l~~N~l~g~ip~~~-----  141 (664)
                      ..+..|+|++|.++..-...+.     +.++|+.|+|++|.++..-...+ ..+++|+.|+|++|+++..-...+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            4788999999998864333333     23789999999999975433333 345689999999999876433333     


Q ss_pred             cCCcccceeecccCcccc----cCCccccCCCCCCEeeCCCCcccc
Q 006019          142 GINHSLTILLLDNNDFVG----SLSPEIYKLQVLSESQVDEGQLSS  183 (664)
Q Consensus       142 ~~~~~L~~l~l~~N~~~g----~iP~~~~~l~~L~~l~l~~n~l~g  183 (664)
                      ...++|+.|+|++|.++.    .++..+..+++|++|+|++|+++.
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~  197 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD  197 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCc
Confidence            246789999999999865    356666788999999999999875

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.18  E-value=1.1e-05  Score=80.78  Aligned_cols=135  Identities=13%  Similarity=0.100  Sum_probs=88.5

Q ss_pred             cccccCCCe-EEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcccceEEEEecCCCceeEEEE
Q 006019          376 NVIGSSPIG-TVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       376 ~~iG~G~~G-~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+..|..| .||+-... ++..+.+|+-..        ....++.+|...|+.+. +--+.++++++.+.+  ..++||
T Consensus        30 ~~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~--------~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~--~~~lvm   99 (272)
T 4gkh_A           30 ARDNVGQSGATIYRLYGKPNAPELFLKHGKG--------SVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPD--DAWLLT   99 (272)
T ss_dssp             EEEECSSSSCEEEEEECCTTCCCEEEEEEET--------HHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETT--EEEEEE
T ss_pred             EEccCCCcCCeEEEEEecCCCeEEEEEECCC--------CCHhHHHHHHHHHHHhccCCCcCeEEEEEEECC--eEEEEE
Confidence            345566665 68987754 456788887542        23456888999998874 334677889988776  679999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhc---------------------------------------
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ---------------------------------------  493 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~---------------------------------------  493 (664)
                      |++++.++.+.....      ...+..++.+++..|+-||+                                       
T Consensus       100 e~l~G~~~~~~~~~~------~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (272)
T 4gkh_A          100 TAIPGKTAFQVLEEY------PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNG  173 (272)
T ss_dssp             ECCCSEEHHHHHHHC------GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTT
T ss_pred             EeeCCccccccccCC------HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccc
Confidence            999987765532210      01112233333333333332                                       


Q ss_pred             -----------------CCCCeEEeCcCCCCeEecCCCceEecccCchhh
Q 006019          494 -----------------LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  526 (664)
Q Consensus       494 -----------------~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~  526 (664)
                                       ..+.++|+|+.+.|||++++..+-|.||+.+..
T Consensus       174 ~~~~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~  223 (272)
T 4gkh_A          174 WPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI  223 (272)
T ss_dssp             CCHHHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             hHHHHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECccccc
Confidence                             112379999999999999887788999987643

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.18  E-value=1.2e-05  Score=82.20  Aligned_cols=135  Identities=11%  Similarity=0.048  Sum_probs=88.0

Q ss_pred             cccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCC---cccceEEEEecCCCceeEEEE
Q 006019          376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK---NFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~---niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.++.|....||+.    |..+++|+-..       ......+.+|.++|+.+++.   .+.+.++++..... ..++||
T Consensus        25 ~~l~~G~~n~v~~v----g~~~VlR~~~~-------~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g-~~~~v~   92 (306)
T 3tdw_A           25 ESLGEGFRNYAILV----NGDWVFRFPKS-------QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDG-NPFVGY   92 (306)
T ss_dssp             EEEEECSSEEEEEE----TTTEEEEEESS-------HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTS-CEEEEE
T ss_pred             eecCCCcceeEEEE----CCEEEEEecCC-------chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCC-ceEEEE
Confidence            45788999999987    45677776421       23456789999999999753   35667777753221 468999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhc---------------------------------------
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ---------------------------------------  493 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~---------------------------------------  493 (664)
                      ||+++..+.+...    ..++...+..++.++++.|+.||+                                       
T Consensus        93 e~i~G~~l~~~~~----~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~  168 (306)
T 3tdw_A           93 RKVQGQILGEDGM----AVLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESL  168 (306)
T ss_dssp             ECCCSEECHHHHH----TTSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred             eccCCeECchhhh----hhCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhh
Confidence            9999988765211    112233333334444444333332                                       


Q ss_pred             -------------------CCCCeEEeCcCCCCeEecC---CCc-eEecccCchhh
Q 006019          494 -------------------LNPPIAHNYLNSSAVHLTE---DYA-AKLSDLSFWNE  526 (664)
Q Consensus       494 -------------------~~~~ivHrDLk~~NILld~---~~~-~kl~DfGla~~  526 (664)
                                         ..+.++|+|+++.||+++.   ++. ..|.||+.+..
T Consensus       169 ~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~  224 (306)
T 3tdw_A          169 RDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI  224 (306)
T ss_dssp             HHHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred             HHHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence                               2335799999999999997   354 58999987543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.17  E-value=3.1e-07  Score=86.77  Aligned_cols=111  Identities=19%  Similarity=0.173  Sum_probs=89.0

Q ss_pred             CCcEEEEEeCCC-Ccccc----ccccccCCCCCCEEEccCCccccc----CCcccCCCCCCCEEEeecCccccc----CC
Q 006019           72 DGKVVNLNLKDL-CLEGT----LAPEIQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGP----LP  138 (664)
Q Consensus        72 ~~~v~~l~L~~~-~l~g~----ip~~~~~l~~L~~l~L~~N~l~g~----ip~~~~~l~~L~~L~l~~N~l~g~----ip  138 (664)
                      ...++.|+|++| .++..    +...+...++|+.|+|++|.+...    +...+...+.|++|+|++|.++..    +.
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            468999999999 88642    455677889999999999999743    455566678899999999999864    45


Q ss_pred             ccccCCcccceeec--ccCccccc----CCccccCCCCCCEeeCCCCccc
Q 006019          139 NDLGINHSLTILLL--DNNDFVGS----LSPEIYKLQVLSESQVDEGQLS  182 (664)
Q Consensus       139 ~~~~~~~~L~~l~l--~~N~~~g~----iP~~~~~l~~L~~l~l~~n~l~  182 (664)
                      ..+...++|++|+|  ++|.++..    +...+...++|++|+|++|.+.
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            56777889999999  88999754    4455667789999999999986

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.17  E-value=2e-07  Score=104.69  Aligned_cols=112  Identities=10%  Similarity=0.031  Sum_probs=83.2

Q ss_pred             CcEEEEEeCCCCccccccccccC-CCCCCEEEcc----CCccccc-----CCcccCCCCCCCEEEeecC--cccccCCcc
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQS-LTHIKSIILR----NNSFSGI-----IPEGFGELEELEVLDFGHN--NFSGPLPND  140 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~-l~~L~~l~L~----~N~l~g~-----ip~~~~~l~~L~~L~l~~N--~l~g~ip~~  140 (664)
                      .+++.|+|+.+.+++..+..++. +++|+.|+|+    .|.+++.     ++..+..+++|+.|+|+++  .+++..+..
T Consensus       378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~  457 (592)
T 3ogk_B          378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY  457 (592)
T ss_dssp             TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred             ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence            47888888888888877777765 8888888885    6777763     4444667888888888743  466665555


Q ss_pred             ccC-CcccceeecccCcccc-cCCccccCCCCCCEeeCCCCccccc
Q 006019          141 LGI-NHSLTILLLDNNDFVG-SLSPEIYKLQVLSESQVDEGQLSSA  184 (664)
Q Consensus       141 ~~~-~~~L~~l~l~~N~~~g-~iP~~~~~l~~L~~l~l~~n~l~g~  184 (664)
                      ++. +++|+.|+|++|++++ .++..+..+++|++|++++|.+++.
T Consensus       458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~  503 (592)
T 3ogk_B          458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER  503 (592)
T ss_dssp             HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred             HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence            543 7788888888888876 4555667788888888888887654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.03  E-value=8.8e-07  Score=99.40  Aligned_cols=104  Identities=20%  Similarity=0.187  Sum_probs=67.1

Q ss_pred             cEEEEEeCCCC-cc-ccccccccCCCCCCEEEccCCccccc----CCcccCCCCCCCEEEeecCccc----ccCCccccC
Q 006019           74 KVVNLNLKDLC-LE-GTLAPEIQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFS----GPLPNDLGI  143 (664)
Q Consensus        74 ~v~~l~L~~~~-l~-g~ip~~~~~l~~L~~l~L~~N~l~g~----ip~~~~~l~~L~~L~l~~N~l~----g~ip~~~~~  143 (664)
                      +++.|+|+++. ++ ..++....++++|+.|+|++|.+++.    ++..+..+++|+.|+|++|.++    +.++..+.+
T Consensus       139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~  218 (592)
T 3ogk_B          139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN  218 (592)
T ss_dssp             GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred             cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence            37778877665 21 11233334677788888888877655    4444556777777777777776    345555566


Q ss_pred             CcccceeecccCcccccCCccccCCCCCCEeeCCC
Q 006019          144 NHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDE  178 (664)
Q Consensus       144 ~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~  178 (664)
                      +++|+.|+|++|.+.+ +|..+.++++|++|+++.
T Consensus       219 ~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~  252 (592)
T 3ogk_B          219 CRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGS  252 (592)
T ss_dssp             CTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECB
T ss_pred             CCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccc
Confidence            7777777777777765 556666666666666653

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=97.96  E-value=2.8e-05  Score=81.26  Aligned_cols=85  Identities=6%  Similarity=-0.034  Sum_probs=54.0

Q ss_pred             ccc-ccCCCeEEEEEEEC-------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCC---CcccceEEEEecCC
Q 006019          376 NVI-GSSPIGTVYKGTLS-------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH---KNFVNLIGFCEEEE  444 (664)
Q Consensus       376 ~~i-G~G~~G~Vy~g~~~-------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H---~niv~l~g~~~~~~  444 (664)
                      +.| +.|....+|+....       ++..+++|...........  ....+.+|+.+++.++.   -.+.++++++.+..
T Consensus        26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~--~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~  103 (357)
T 3ats_A           26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVF--PTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGD  103 (357)
T ss_dssp             EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSS--SCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSST
T ss_pred             EECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccC--chhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCC
Confidence            456 88889999998764       2567777765432200000  01346778888887742   35677888876542


Q ss_pred             C-ceeEEEEEecCCCChhh
Q 006019          445 P-FTRMMVFEYAPNGTLFE  462 (664)
Q Consensus       445 ~-~~~~lV~Ey~~~GsL~~  462 (664)
                      . ...++||||+++..+.+
T Consensus       104 ~~g~~~~v~e~l~G~~l~~  122 (357)
T 3ats_A          104 VLGTPFFLMDYVEGVVPPD  122 (357)
T ss_dssp             TTSSCEEEEECCCCBCCCB
T ss_pred             ccCCceEEEEecCCCChhh
Confidence            1 13479999999877653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.74  E-value=2.7e-06  Score=95.45  Aligned_cols=111  Identities=7%  Similarity=0.007  Sum_probs=77.6

Q ss_pred             CcEEEEEeCCCCcccccccccc-CCCCCCEEEcc--C----Ccccc-----cCCcccCCCCCCCEEEeecCcccccCCcc
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQ-SLTHIKSIILR--N----NSFSG-----IIPEGFGELEELEVLDFGHNNFSGPLPND  140 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~-~l~~L~~l~L~--~----N~l~g-----~ip~~~~~l~~L~~L~l~~N~l~g~ip~~  140 (664)
                      .++..|.+..+++++.....+. .+++|+.|+|+  +    |.+++     .++..+..+++|+.|+|++ ++++..+..
T Consensus       372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~  450 (594)
T 2p1m_B          372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY  450 (594)
T ss_dssp             TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH
T ss_pred             hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH
Confidence            4677788888888776666665 57888888888  3    55552     2223356677888888866 666655555


Q ss_pred             ccC-CcccceeecccCcccccCCccc-cCCCCCCEeeCCCCccccc
Q 006019          141 LGI-NHSLTILLLDNNDFVGSLSPEI-YKLQVLSESQVDEGQLSSA  184 (664)
Q Consensus       141 ~~~-~~~L~~l~l~~N~~~g~iP~~~-~~l~~L~~l~l~~n~l~g~  184 (664)
                      ++. +++|+.|+|++|.+++..+..+ ..+++|+.|+|++|.+++.
T Consensus       451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~  496 (594)
T 2p1m_B          451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK  496 (594)
T ss_dssp             HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred             HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence            554 7788888888888876655555 5678888888888888544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.69  E-value=8.5e-05  Score=76.66  Aligned_cols=85  Identities=12%  Similarity=0.049  Sum_probs=44.6

Q ss_pred             CCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccc-eeecccCcccccCCccccCCCCCCEe
Q 006019           96 LTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLT-ILLLDNNDFVGSLSPEIYKLQVLSES  174 (664)
Q Consensus        96 l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~-~l~l~~N~~~g~iP~~~~~l~~L~~l  174 (664)
                      +++|+.|+|++|++...-+..|.+|++|+.|+|++| ++---+..|.++.+|+ .+++.+ +++.--+..|.+|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            555666666665555333334556666666666655 4422223355555665 666655 4442223445556666666


Q ss_pred             eCCCCccc
Q 006019          175 QVDEGQLS  182 (664)
Q Consensus       175 ~l~~n~l~  182 (664)
                      +++.|+++
T Consensus       303 ~l~~n~i~  310 (329)
T 3sb4_A          303 LATGDKIT  310 (329)
T ss_dssp             EECSSCCC
T ss_pred             EeCCCccC
Confidence            66555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.67  E-value=1.1e-05  Score=76.11  Aligned_cols=97  Identities=19%  Similarity=0.189  Sum_probs=78.3

Q ss_pred             cccccccCCCCCCEEEccCC-ccccc----CCcccCCCCCCCEEEeecCccccc----CCccccCCcccceeecccCccc
Q 006019           88 TLAPEIQSLTHIKSIILRNN-SFSGI----IPEGFGELEELEVLDFGHNNFSGP----LPNDLGINHSLTILLLDNNDFV  158 (664)
Q Consensus        88 ~ip~~~~~l~~L~~l~L~~N-~l~g~----ip~~~~~l~~L~~L~l~~N~l~g~----ip~~~~~~~~L~~l~l~~N~~~  158 (664)
                      .+...+...+.|+.|+|++| .+...    +...+...++|++|+|++|++...    +...+...++|++|+|++|.++
T Consensus        27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            34556788999999999999 88743    556677789999999999998742    3344556688999999999997


Q ss_pred             cc----CCccccCCCCCCEeeC--CCCccccc
Q 006019          159 GS----LSPEIYKLQVLSESQV--DEGQLSSA  184 (664)
Q Consensus       159 g~----iP~~~~~l~~L~~l~l--~~n~l~g~  184 (664)
                      ..    +...+...++|++|+|  ++|.++..
T Consensus       107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~  138 (185)
T 1io0_A          107 GSGILALVEALQSNTSLIELRIDNQSQPLGNN  138 (185)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred             HHHHHHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence            54    5667888899999999  88999753

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=97.64  E-value=0.00013  Score=77.33  Aligned_cols=78  Identities=12%  Similarity=0.082  Sum_probs=47.6

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeeccc---CCCchhHHHHHHHHHHHHhccCC--Cc-ccceEEEEecCCCcee
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASA---KDWPKNLEVQFRKKIDTLSKVNH--KN-FVNLIGFCEEEEPFTR  448 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~---~~~~~~~~~~f~~E~~~l~~l~H--~n-iv~l~g~~~~~~~~~~  448 (664)
                      +.||.|.++.||++... ++..++||.......   ..+ ......+..|.++++.+.+  +. +.+++.+.  .+  ..
T Consensus        36 ~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~-~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~d--~~--~~  110 (397)
T 2olc_A           36 QEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESW-PLTIDRARIESSALIRQGEHVPHLVPRVFYSD--TE--MA  110 (397)
T ss_dssp             EECCSSSSEEEEEEEC----CEEEEEEECCC-------C-CCCTTHHHHHHHHHHHHHTTCGGGSCCEEEEE--TT--TT
T ss_pred             EECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCC-cCcHHHHHHHHHHHHHhhhhCCCCcCeEEEEc--CC--cc
Confidence            57999999999999754 467889987643211   000 0112346778888887742  33 44566543  22  34


Q ss_pred             EEEEEecCCC
Q 006019          449 MMVFEYAPNG  458 (664)
Q Consensus       449 ~lV~Ey~~~G  458 (664)
                      ++||||+++.
T Consensus       111 ~lvmE~l~g~  120 (397)
T 2olc_A          111 VTVMEDLSHL  120 (397)
T ss_dssp             EEEECCCTTS
T ss_pred             EEEEEeCCCc
Confidence            7999999763

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.63  E-value=1.5e-05  Score=83.43  Aligned_cols=109  Identities=15%  Similarity=0.130  Sum_probs=74.2

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccC--CCCCCCEEEeec--Cccccc-----CCccc--
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFG--ELEELEVLDFGH--NNFSGP-----LPNDL--  141 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~--~l~~L~~L~l~~--N~l~g~-----ip~~~--  141 (664)
                      .++..|+|+++. .-.+++ + .+++|+.|+|..+.++...-..+.  .+++|+.|+|+.  |+..|.     +-..+  
T Consensus       172 P~L~~L~L~g~~-~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~  248 (362)
T 2ra8_A          172 PLLNNLKIKGTN-NLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK  248 (362)
T ss_dssp             TTCCEEEEECCB-TCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred             CCCcEEEEeCCC-Cceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence            589999998772 113444 3 378899999988887654444443  688999998863  332222     11122  


Q ss_pred             cCCcccceeecccCcccccCCcccc---CCCCCCEeeCCCCccccc
Q 006019          142 GINHSLTILLLDNNDFVGSLSPEIY---KLQVLSESQVDEGQLSSA  184 (664)
Q Consensus       142 ~~~~~L~~l~l~~N~~~g~iP~~~~---~l~~L~~l~l~~n~l~g~  184 (664)
                      ..+++|++|+|.+|.+....+..+.   .+++|++|+|+.|.+++.
T Consensus       249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~  294 (362)
T 2ra8_A          249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE  294 (362)
T ss_dssp             TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred             CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence            2478899999999988765554444   477899999999988764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.59  E-value=8.8e-06  Score=91.20  Aligned_cols=107  Identities=16%  Similarity=0.142  Sum_probs=66.9

Q ss_pred             CcEEEEEeCCCCcccccccccc-CCCCCCEEEccCC-ccccc-CCcccCCCCCCCEEEeecCcccccCCcccc----CCc
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQ-SLTHIKSIILRNN-SFSGI-IPEGFGELEELEVLDFGHNNFSGPLPNDLG----INH  145 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~-~l~~L~~l~L~~N-~l~g~-ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~----~~~  145 (664)
                      .+++.|+|+++.+++..+..+. .+++|+.|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+.    .++
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~  184 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT  184 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence            4677777777777766666654 5777777777777 44432 444445677777777777777664443333    456


Q ss_pred             ccceeecccCc--ccc-cCCccccCCCCCCEeeCCCC
Q 006019          146 SLTILLLDNND--FVG-SLSPEIYKLQVLSESQVDEG  179 (664)
Q Consensus       146 ~L~~l~l~~N~--~~g-~iP~~~~~l~~L~~l~l~~n  179 (664)
                      +|+.|++++|.  ++. .++.-+.++++|++|++++|
T Consensus       185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            77777777775  221 11122345677777777777

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=97.56  E-value=0.00027  Score=72.97  Aligned_cols=31  Identities=19%  Similarity=0.235  Sum_probs=27.2

Q ss_pred             CCCeEEeCcCCCCeEecCCCceEecccCchh
Q 006019          495 NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN  525 (664)
Q Consensus       495 ~~~ivHrDLk~~NILld~~~~~kl~DfGla~  525 (664)
                      .+.++|+|+++.|||++.+..+.|.||+.+.
T Consensus       221 ~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~  251 (346)
T 2q83_A          221 SPNLCHQDYGTGNTLLGENEQIWVIDLDTVS  251 (346)
T ss_dssp             SCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred             cCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence            4569999999999999888899999998653

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=97.55  E-value=0.00023  Score=71.86  Aligned_cols=74  Identities=18%  Similarity=0.261  Sum_probs=52.8

Q ss_pred             cccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCC---CcccceEEEEecCCCceeEEEE
Q 006019          376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH---KNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H---~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+|.|..+.||+.++.+|+.+.+|+.......     ....|..|++.|+.+.-   --+.+.+++.  .    .++||
T Consensus        21 ~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~-----~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~--~----~~lv~   89 (288)
T 3f7w_A           21 AERGHSHRWHLYRVELADGTPLFVKALPDDAPA-----LDGLFRAEALGLDWLGRSFGSPVPQVAGWD--D----RTLAM   89 (288)
T ss_dssp             EEEEEETTEEEEEEEETTSCEEEEEECCTTCCC-----CTTHHHHHHHHHHHHTCSTTCCSCCEEEEE--T----TEEEE
T ss_pred             EecCCCCCeEEEEEEECCCCEEEEEEeCCCCcc-----hhhHHHHHHHHHHHHHhhCCCCcceEEecc--C----ceEEE
Confidence            568999999999999999999999975432211     12358889999888742   2344555543  2    27999


Q ss_pred             EecCCCCh
Q 006019          453 EYAPNGTL  460 (664)
Q Consensus       453 Ey~~~GsL  460 (664)
                      ||++.+..
T Consensus        90 e~l~~~~~   97 (288)
T 3f7w_A           90 EWVDERPP   97 (288)
T ss_dssp             ECCCCCCC
T ss_pred             EeecccCC
Confidence            99987765

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=97.42  E-value=0.0019  Score=65.84  Aligned_cols=135  Identities=14%  Similarity=0.191  Sum_probs=90.2

Q ss_pred             cccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC---CCcccceEEEEecCCCceeEEEE
Q 006019          376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN---HKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~---H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.|+.|....+|+... ++..+++|.....        ....|..|.+.|+.+.   ...+.+.++++...+  ..++||
T Consensus        42 ~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~--------~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g--~~~lvm  110 (312)
T 3jr1_A           42 EKLYSGEMNEIWLIND-EVQTVFVKINERS--------YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQG--HSFLLL  110 (312)
T ss_dssp             EEECCSSSSEEEEEES-SSCEEEEEEEEGG--------GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSS--EEEEEE
T ss_pred             EEeCCccceeeeEEEE-CCCeEEEEeCCcc--------cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCC--ceEEEE
Confidence            4689999999999886 4567778876421        2456889999888874   356888898887655  679999


Q ss_pred             EecCCCChhh-----------hhcccCC-C-------------------CCCHHHHH---HHHH----------------
Q 006019          453 EYAPNGTLFE-----------HIHIKES-E-------------------HLDWGMRL---RIAM----------------  482 (664)
Q Consensus       453 Ey~~~GsL~~-----------~l~~~~~-~-------------------~l~~~~~~---~ia~----------------  482 (664)
                      ||+++..+..           .||.... .                   .-+|....   ++..                
T Consensus       111 e~l~G~~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~  190 (312)
T 3jr1_A          111 EALNKSKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNID  190 (312)
T ss_dssp             ECCCCCCCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHH
T ss_pred             EeccCCCCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence            9999887621           2332211 0                   12564321   1111                


Q ss_pred             HHH-HHHHHh--hcCCCCeEEeCcCCCCeEecCCCceEecccC
Q 006019          483 GMA-YCLEHM--HQLNPPIAHNYLNSSAVHLTEDYAAKLSDLS  522 (664)
Q Consensus       483 ~ia-~gL~yL--H~~~~~ivHrDLk~~NILld~~~~~kl~DfG  522 (664)
                      .+. .....|  |+..|.++|+|+.+.|++++.++ +.|.||.
T Consensus       191 ~l~~~l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~  232 (312)
T 3jr1_A          191 LIVQIVADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA  232 (312)
T ss_dssp             HHHHHHHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred             HHHHHHHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence            111 122334  23456799999999999999887 8899984

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.21  E-value=0.00012  Score=76.47  Aligned_cols=110  Identities=13%  Similarity=0.138  Sum_probs=73.1

Q ss_pred             CcEEEEEeCCCCc---------cccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCcccc-
Q 006019           73 GKVVNLNLKDLCL---------EGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLG-  142 (664)
Q Consensus        73 ~~v~~l~L~~~~l---------~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~-  142 (664)
                      .++..|.+.++.+         .+.+.+.+..+++|+.|+|++|.- -.+|. +. +++|+.|+|..+.++...-..+. 
T Consensus       139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~-l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~  215 (362)
T 2ra8_A          139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN-LSIGK-KP-RPNLKSLEIISGGLPDSVVEDILG  215 (362)
T ss_dssp             TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT-CBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHH
T ss_pred             chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC-ceecc-cc-CCCCcEEEEecCCCChHHHHHHHH
Confidence            4778888865533         234556677889999999988731 13444 43 78999999998887654434444 


Q ss_pred             -CCcccceeeccc--Cccccc-----CCccc--cCCCCCCEeeCCCCcccccc
Q 006019          143 -INHSLTILLLDN--NDFVGS-----LSPEI--YKLQVLSESQVDEGQLSSAA  185 (664)
Q Consensus       143 -~~~~L~~l~l~~--N~~~g~-----iP~~~--~~l~~L~~l~l~~n~l~g~~  185 (664)
                       .+++|+.|+|+.  |...|.     +.+.+  ..+++|++|+|.+|.++...
T Consensus       216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~  268 (362)
T 2ra8_A          216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVV  268 (362)
T ss_dssp             SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHH
T ss_pred             ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHH
Confidence             688999999863  332222     11222  25789999999999887543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.17  E-value=0.00051  Score=70.72  Aligned_cols=100  Identities=11%  Similarity=-0.010  Sum_probs=43.4

Q ss_pred             cEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCC-EEEeecCcccccCCccccCCcccceeec
Q 006019           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELE-VLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~-~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      +++.|+|++|+++.--+..+.++++|+.|+|.+| +...-+..|.+|++|+ .++|++ +++---+..|.+|++|+.|++
T Consensus       227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l  304 (329)
T 3sb4_A          227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA  304 (329)
T ss_dssp             TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred             CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence            3444455544444211223444555555555544 3322223344555554 555544 333222234444555555555


Q ss_pred             ccCcccccCCccccCCCCCCEee
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQ  175 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~  175 (664)
                      +.|+++.--+..|.++++|+.++
T Consensus       305 ~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          305 TGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CCCccCccchhhhcCCcchhhhc
Confidence            55544432233444444444443

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=96.96  E-value=0.002  Score=65.33  Aligned_cols=70  Identities=9%  Similarity=0.063  Sum_probs=41.4

Q ss_pred             cccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcc-cceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF-VNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~ni-v~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      +.|+.|....+|+.     ..+.+|+........      .+..+|+.+++.+....+ .++++++.+    ..++|+||
T Consensus        24 ~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~~------~~r~~E~~~l~~l~~~g~~P~~~~~~~~----~~~~v~e~   88 (301)
T 3dxq_A           24 LERLGGLTNLVFRA-----GDLCLRIPGKGTEEY------INRANEAVAAREAAKAGVSPEVLHVDPA----TGVMVTRY   88 (301)
T ss_dssp             EEEESCSSEEEEEE-----TTEEEEEECC----C------CCHHHHHHHHHHHHHTTSSCCEEEECTT----TCCEEEEC
T ss_pred             eEcCCcccccccee-----eeEEEECCCCCccce------eCHHHHHHHHHHHHHcCCCCceEEEECC----CCEEEEee
Confidence            56888999999998     446777664321111      123457777766643233 466665432    23689999


Q ss_pred             c-CCCCh
Q 006019          455 A-PNGTL  460 (664)
Q Consensus       455 ~-~~GsL  460 (664)
                      + ++-.+
T Consensus        89 i~~g~~l   95 (301)
T 3dxq_A           89 IAGAQTM   95 (301)
T ss_dssp             CTTCEEC
T ss_pred             cCCCccC
Confidence            9 55444

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=96.66  E-value=0.0035  Score=66.84  Aligned_cols=70  Identities=14%  Similarity=0.123  Sum_probs=43.2

Q ss_pred             CCCeEEeCcCCCCeEecCCCceEecccCchhhhhhhh----------hhcccccccCCC---CCCcCCcchhhHHHHHHH
Q 006019          495 NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE----------MAATSKKLSSAP---SASLESNVYNFGVLLFEM  561 (664)
Q Consensus       495 ~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~~----------~~~~~pe~~~~~---~~s~ksDVySfGvvl~El  561 (664)
                      .+.++|+|+++.|||++.+. ++|.||+.+.......          ..+..+++....   ......++++....+|+.
T Consensus       231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p~~Dla~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (420)
T 2pyw_A          231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPMGFDIGAYLGNLILAFFAQDGHATQENDRKEYKQWILRTIEQTWNL  309 (420)
T ss_dssp             CCEEECSCCSGGGEEECSSC-EEECCCTTCEEECHHHHHHHHHHHHHHHHHHGGGGCCSSCCSHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEecCCCCCcEEEeCCC-CEEEeCcccccCchHHHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHHH
Confidence            44599999999999999876 9999998765432110          111122222111   112234556788888888


Q ss_pred             HhCC
Q 006019          562 VTGR  565 (664)
Q Consensus       562 ~tG~  565 (664)
                      ++++
T Consensus       310 y~~~  313 (420)
T 2pyw_A          310 FNKR  313 (420)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7764

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=96.63  E-value=0.0055  Score=62.97  Aligned_cols=33  Identities=6%  Similarity=-0.044  Sum_probs=27.2

Q ss_pred             CCCeEEeCcCCCCeEecCC----CceEecccCchhhh
Q 006019          495 NPPIAHNYLNSSAVHLTED----YAAKLSDLSFWNEI  527 (664)
Q Consensus       495 ~~~ivHrDLk~~NILld~~----~~~kl~DfGla~~~  527 (664)
                      .+.++|||+.+.|||++.+    ..+.|.||+.+...
T Consensus       182 ~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G  218 (333)
T 3csv_A          182 DMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLG  218 (333)
T ss_dssp             CCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEE
T ss_pred             CCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcC
Confidence            3459999999999999875    68899999876543

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=96.43  E-value=0.011  Score=60.26  Aligned_cols=140  Identities=11%  Similarity=0.063  Sum_probs=76.4

Q ss_pred             cccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCc--ccceEEEE------ecCCCce
Q 006019          376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN--FVNLIGFC------EEEEPFT  447 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~n--iv~l~g~~------~~~~~~~  447 (664)
                      +.|+.|....+|+....+| .+++|.......       ..++..|+.++..++...  +.+++...      ...+  .
T Consensus        28 ~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~~~-------~~~l~~e~~~l~~L~~~g~~vP~~~~~~~g~~~~~~~g--~   97 (322)
T 2ppq_A           28 KGIAEGVENSNFLLHTTKD-PLILTLYEKRVE-------KNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGELSG--R   97 (322)
T ss_dssp             EEECC---EEEEEEEESSC-CEEEEEECC----------CCHHHHHHHHHHHHHHTTCCCCCBCCBTTCCSCEEETT--E
T ss_pred             eccCCCcccceEEEEeCCc-cEEEEEeCCCCC-------HHHHHHHHHHHHHHHHCCCCCCcccCCCCCCEEEEECC--E
Confidence            3467788899999987666 566777653211       124556777776664222  23333211      1112  4


Q ss_pred             eEEEEEecCCCChhh--------------hhccc----CCC------CCCHHHHHH------------HHHHHHHHHHHh
Q 006019          448 RMMVFEYAPNGTLFE--------------HIHIK----ESE------HLDWGMRLR------------IAMGMAYCLEHM  491 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~--------------~l~~~----~~~------~l~~~~~~~------------ia~~ia~gL~yL  491 (664)
                      .+++++|+++..+..              .+|..    ...      ...|.....            +...+...++++
T Consensus        98 ~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~l~~~~~~l  177 (322)
T 2ppq_A           98 PAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIRPEIDYL  177 (322)
T ss_dssp             EEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTTHHHHHHHHHHHH
T ss_pred             EEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            589999999865421              12211    000      012433111            111244455555


Q ss_pred             hc-----CCCCeEEeCcCCCCeEecCCCceEecccCchh
Q 006019          492 HQ-----LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN  525 (664)
Q Consensus       492 H~-----~~~~ivHrDLk~~NILld~~~~~kl~DfGla~  525 (664)
                      ++     ..+.++|+|+.+.|||++++..+.|.||+.+.
T Consensus       178 ~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~  216 (322)
T 2ppq_A          178 AAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC  216 (322)
T ss_dssp             HHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             HhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence            42     12359999999999999987667899998654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.30  E-value=0.0016  Score=60.09  Aligned_cols=82  Identities=10%  Similarity=0.013  Sum_probs=42.3

Q ss_pred             CCCEEEccCCcccccCCcccCCCCCCCEEEeecCc-ccccCCccccCC----cccceeecccCc-ccccCCccccCCCCC
Q 006019           98 HIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN-FSGPLPNDLGIN----HSLTILLLDNND-FVGSLSPEIYKLQVL  171 (664)
Q Consensus        98 ~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~-l~g~ip~~~~~~----~~L~~l~l~~N~-~~g~iP~~~~~l~~L  171 (664)
                      .|+.|||+++.++..--..+..|++|+.|+|+++. ++..-=..++.+    ++|+.|+|+++. ++-.==..+.++++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            45555555555543322334556666666666653 443211223332    356667766653 432111235567777


Q ss_pred             CEeeCCCC
Q 006019          172 SESQVDEG  179 (664)
Q Consensus       172 ~~l~l~~n  179 (664)
                      ++|++++.
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            77777765

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=96.23  E-value=0.013  Score=62.58  Aligned_cols=72  Identities=14%  Similarity=0.169  Sum_probs=47.8

Q ss_pred             cccccCCCeEEEEEEECC--------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcc-cceEEEEecCCCc
Q 006019          376 NVIGSSPIGTVYKGTLSN--------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF-VNLIGFCEEEEPF  446 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~--------~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~ni-v~l~g~~~~~~~~  446 (664)
                      +.|+.|....||+....+        +..+.+|+....   .    ....+..|..+++.+...++ .++++++.  +  
T Consensus        79 ~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~---~----~~~~li~E~~~l~~L~~~g~~P~l~~~~~--~--  147 (429)
T 1nw1_A           79 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP---E----TESHLVAESVIFTLLSERHLGPKLYGIFS--G--  147 (429)
T ss_dssp             EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC---C----CHHHHHHHHHHHHHHHHTTSSSCEEEEET--T--
T ss_pred             EEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC---C----cHHHHHHHHHHHHHHHhCCCCCcEEEEeC--C--
Confidence            468888899999998763        467778776321   1    11345578888888753334 56777653  2  


Q ss_pred             eeEEEEEecCCCCh
Q 006019          447 TRMMVFEYAPNGTL  460 (664)
Q Consensus       447 ~~~lV~Ey~~~GsL  460 (664)
                        .+|+||+++..|
T Consensus       148 --g~v~e~l~G~~l  159 (429)
T 1nw1_A          148 --GRLEEYIPSRPL  159 (429)
T ss_dssp             --EEEECCCCEEEC
T ss_pred             --CEEEEEeCCccc
Confidence              389999986444

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=96.19  E-value=0.028  Score=60.42  Aligned_cols=73  Identities=10%  Similarity=0.058  Sum_probs=46.5

Q ss_pred             cccccCCCeEEEEEEECC-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcc-cceEEEEecCCCceeEEEEE
Q 006019          376 NVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF-VNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~-~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~ni-v~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.|+.|-...+|+....+ +..+.+|+........      .+-..|..++..+...++ .++++++.  +    .+|||
T Consensus       114 ~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~------idR~~E~~vl~~L~~~gl~P~ll~~~~--~----G~v~e  181 (458)
T 2qg7_A          114 QIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEI------INREREKKISCILYNKNIAKKIYVFFT--N----GRIEE  181 (458)
T ss_dssp             EEECC--CEEEEEEEETTTTEEEEEEEECC-CCSC------SCHHHHHHHHHHHTTSSSBCCEEEEET--T----EEEEE
T ss_pred             EEcCCCeEeEEEEEEECCCCceEEEEECCCChhhh------cCHHHHHHHHHHHHhcCCCCCEEEEeC--C----eEEEE
Confidence            568888899999999865 4677787653221111      112578888888865555 46777762  2    25999


Q ss_pred             ecCCCCh
Q 006019          454 YAPNGTL  460 (664)
Q Consensus       454 y~~~GsL  460 (664)
                      |+++..|
T Consensus       182 ~I~G~~l  188 (458)
T 2qg7_A          182 FMDGYAL  188 (458)
T ss_dssp             CCCSEEC
T ss_pred             eeCCccC
Confidence            9987554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.13  E-value=0.011  Score=62.65  Aligned_cols=100  Identities=12%  Similarity=0.132  Sum_probs=52.6

Q ss_pred             cEEEEEeCCCCccccccc-cccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccc----cCC-ccccCCccc
Q 006019           74 KVVNLNLKDLCLEGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG----PLP-NDLGINHSL  147 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~-~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g----~ip-~~~~~~~~L  147 (664)
                      ++..++|.++ +. .|+. ++.+ .+|+.+.| .|++.-.-+..|.+|++|+.+++.+|.+..    .|+ ..|.+|++|
T Consensus       227 ~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L  302 (401)
T 4fdw_A          227 QLKTIEIPEN-VS-TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKL  302 (401)
T ss_dssp             TCCCEECCTT-CC-EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTC
T ss_pred             CCCEEecCCC-cc-Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccC
Confidence            5666666543 33 2332 2333 56666666 334443334556666667777666665541    122 345566666


Q ss_pred             ceeecccCcccccCC-ccccCCCCCCEeeCCCC
Q 006019          148 TILLLDNNDFVGSLS-PEIYKLQVLSESQVDEG  179 (664)
Q Consensus       148 ~~l~l~~N~~~g~iP-~~~~~l~~L~~l~l~~n  179 (664)
                      +.++|.+ +++ .|+ ..|.+|++|+.++|..|
T Consensus       303 ~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          303 ARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             CEECCCT-TCC-EECTTTTTTCCSCCEEEECTT
T ss_pred             CeEEeCC-ceE-EEhhhhhcCCCCccEEEECcc
Confidence            6666663 344 333 33555666666666443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.05  E-value=0.0087  Score=52.31  Aligned_cols=14  Identities=14%  Similarity=0.271  Sum_probs=5.7

Q ss_pred             CCCCCEeeCCCCcc
Q 006019          168 LQVLSESQVDEGQL  181 (664)
Q Consensus       168 l~~L~~l~l~~n~l  181 (664)
                      +++|+.|+|++|.+
T Consensus        54 l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           54 LPALRTAHLGANPW   67 (130)
T ss_dssp             CTTCCEEECCSSCC
T ss_pred             ccccCEEEecCCCe
Confidence            33344444444433

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=96.03  E-value=0.021  Score=59.73  Aligned_cols=139  Identities=12%  Similarity=0.126  Sum_probs=78.7

Q ss_pred             cccccCCCeEEEEEEECC--------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCc-ccceEEEEecCCCc
Q 006019          376 NVIGSSPIGTVYKGTLSN--------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN-FVNLIGFCEEEEPF  446 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~--------~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~n-iv~l~g~~~~~~~~  446 (664)
                      +.+..|-...+|+....+        +..+.+|+.... .     .....+.+|.++++.+.-.+ ..++++++.+    
T Consensus        56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~-~-----~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----  125 (379)
T 3feg_A           56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAI-L-----QGVDSLVLESVMFAILAERSLGPQLYGVFPE----  125 (379)
T ss_dssp             EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC---------CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----
T ss_pred             EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCc-c-----chHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----
Confidence            457778888999998752        467777764211 1     11345668888888774222 3567766532    


Q ss_pred             eeEEEEEecCCCChhh-----------------hhcccC---CCCCC--HHHHHHHHHHHH-------------------
Q 006019          447 TRMMVFEYAPNGTLFE-----------------HIHIKE---SEHLD--WGMRLRIAMGMA-------------------  485 (664)
Q Consensus       447 ~~~lV~Ey~~~GsL~~-----------------~l~~~~---~~~l~--~~~~~~ia~~ia-------------------  485 (664)
                        .+||||+++..|..                 .+|...   .....  |.+..++..++.                   
T Consensus       126 --g~v~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~  203 (379)
T 3feg_A          126 --GRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLK  203 (379)
T ss_dssp             --EEEEECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHH
T ss_pred             --ccEEEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHH
Confidence              28999999866531                 122111   11222  333333332221                   


Q ss_pred             HHHHH----hhc--CCCCeEEeCcCCCCeEecCC----CceEecccCchhh
Q 006019          486 YCLEH----MHQ--LNPPIAHNYLNSSAVHLTED----YAAKLSDLSFWNE  526 (664)
Q Consensus       486 ~gL~y----LH~--~~~~ivHrDLk~~NILld~~----~~~kl~DfGla~~  526 (664)
                      ..++.    |..  ....++|+|+.+.||+++.+    +.+.+.||..+..
T Consensus       204 ~~~~~L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~  254 (379)
T 3feg_A          204 DEMGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY  254 (379)
T ss_dssp             HHHHHHHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred             HHHHHHHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence            12233    322  22359999999999999987    7899999987543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.00  E-value=0.0027  Score=58.49  Aligned_cols=84  Identities=14%  Similarity=0.126  Sum_probs=63.3

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCc-ccccCCcccCCC----CCCCEEEeecCc-ccccCCccccCCcc
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNS-FSGIIPEGFGEL----EELEVLDFGHNN-FSGPLPNDLGINHS  146 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~-l~g~ip~~~~~l----~~L~~L~l~~N~-l~g~ip~~~~~~~~  146 (664)
                      -+++.|||+++.++..=-..+..+++|+.|+|+++. ++..-=..+..+    ++|++|+|+++. ++..==..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            379999999998764333457899999999999985 775433445554    479999999974 66432235678999


Q ss_pred             cceeecccCc
Q 006019          147 LTILLLDNND  156 (664)
Q Consensus       147 L~~l~l~~N~  156 (664)
                      |+.|+|++..
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999874

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=95.98  E-value=0.026  Score=57.52  Aligned_cols=138  Identities=9%  Similarity=0.026  Sum_probs=77.3

Q ss_pred             ccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCC--cccceEEE-----EecCCCceeE
Q 006019          377 VIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK--NFVNLIGF-----CEEEEPFTRM  449 (664)
Q Consensus       377 ~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~--niv~l~g~-----~~~~~~~~~~  449 (664)
                      .++ |....||+....+|..+++|.......      ....+..|..++..++..  .+++++..     ....+  ..+
T Consensus        33 ~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~~------~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g--~~~  103 (328)
T 1zyl_A           33 PLN-SYENRVYQFQDEDRRRFVVKFYRPERW------TADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQG--FYF  103 (328)
T ss_dssp             EEC-CSSSEEEEECCTTCCCEEEEEECTTTS------CHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETT--EEE
T ss_pred             eec-CcccceEEEEcCCCCEEEEEEcCCCCC------CHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECC--EEE
Confidence            356 778899998877777788888752211      124566777777776422  24444443     11122  457


Q ss_pred             EEEEecCCCChhh--------------hhccc----C---CCCCCHHHH----HHH---------------HHHHHHHHH
Q 006019          450 MVFEYAPNGTLFE--------------HIHIK----E---SEHLDWGMR----LRI---------------AMGMAYCLE  489 (664)
Q Consensus       450 lV~Ey~~~GsL~~--------------~l~~~----~---~~~l~~~~~----~~i---------------a~~ia~gL~  489 (664)
                      +||||+++..+..              .+|..    .   ....++...    ..+               ...+.+.++
T Consensus       104 ~l~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  183 (328)
T 1zyl_A          104 AVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIA  183 (328)
T ss_dssp             EEEECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCHHHHHHHHHHHHHHHH
Confidence            8999998755421              12211    0   112233211    001               111112233


Q ss_pred             Hhh----c-CCCCeEEeCcCCCCeEecCCCceEecccCchh
Q 006019          490 HMH----Q-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN  525 (664)
Q Consensus       490 yLH----~-~~~~ivHrDLk~~NILld~~~~~kl~DfGla~  525 (664)
                      .+.    + ..+.++|+|+++.|||++ + .+.|.||+.+.
T Consensus       184 ~l~~~~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~  222 (328)
T 1zyl_A          184 AVTAHWREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDAR  222 (328)
T ss_dssp             HHHHHCCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCC
T ss_pred             HHHHHhhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCC
Confidence            332    1 233489999999999999 4 89999998654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.82  E-value=0.012  Score=51.39  Aligned_cols=57  Identities=18%  Similarity=0.190  Sum_probs=46.7

Q ss_pred             CEEEccCCccc-ccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecccCccc
Q 006019          100 KSIILRNNSFS-GIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFV  158 (664)
Q Consensus       100 ~~l~L~~N~l~-g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~N~~~  158 (664)
                      ..++.+++.++ ..+|..+.  ++|+.|+|++|+|+..-+..|..+++|+.|+|++|.|.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47899999997 57886654  47999999999999544445778999999999999885

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=95.77  E-value=0.017  Score=60.22  Aligned_cols=73  Identities=8%  Similarity=0.028  Sum_probs=41.8

Q ss_pred             cccccCCCeEEEEEEECC---------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCc-ccceEEEEecCCC
Q 006019          376 NVIGSSPIGTVYKGTLSN---------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN-FVNLIGFCEEEEP  445 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~---------~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~n-iv~l~g~~~~~~~  445 (664)
                      ..++.|....+|+....+         +..+.+|+.......      ..+...|.++++.+...+ ..++++..  .+ 
T Consensus        39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~------~~~~~~E~~~l~~L~~~g~~P~~~~~~--~~-  109 (369)
T 3c5i_A           39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDE------LYNTISEFEVYKTMSKYKIAPQLLNTF--NG-  109 (369)
T ss_dssp             EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGG------TSCHHHHHHHHHHHHHTTSSCCEEEEE--TT-
T ss_pred             EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccc------eecHHHHHHHHHHHHhcCCCCceEEec--CC-
Confidence            457888889999998754         256777765322110      112356777777775333 34666544  22 


Q ss_pred             ceeEEEEEecCCCCh
Q 006019          446 FTRMMVFEYAPNGTL  460 (664)
Q Consensus       446 ~~~~lV~Ey~~~GsL  460 (664)
                         .+||||+++..+
T Consensus       110 ---~~v~e~i~G~~l  121 (369)
T 3c5i_A          110 ---GRIEEWLYGDPL  121 (369)
T ss_dssp             ---EEEEECCCSEEC
T ss_pred             ---cEEEEEecCCcC
Confidence               689999987544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.57  E-value=0.0033  Score=59.09  Aligned_cols=111  Identities=17%  Similarity=0.189  Sum_probs=73.1

Q ss_pred             CCcEEEEEeCCC-Cccc----cccccccCCCCCCEEEccCCccccc----CCcccCCCCCCCEEEeecCccccc----CC
Q 006019           72 DGKVVNLNLKDL-CLEG----TLAPEIQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGP----LP  138 (664)
Q Consensus        72 ~~~v~~l~L~~~-~l~g----~ip~~~~~l~~L~~l~L~~N~l~g~----ip~~~~~l~~L~~L~l~~N~l~g~----ip  138 (664)
                      +..++.|+|+++ ++..    .+...+..=+.|+.|+|++|.+...    |-..+..=+.|+.|+|+.|+++..    |-
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            567888999875 6652    2445566778899999999988743    233344456789999999988743    22


Q ss_pred             ccccCCcccceeecccC---cccc----cCCccccCCCCCCEeeCCCCccc
Q 006019          139 NDLGINHSLTILLLDNN---DFVG----SLSPEIYKLQVLSESQVDEGQLS  182 (664)
Q Consensus       139 ~~~~~~~~L~~l~l~~N---~~~g----~iP~~~~~l~~L~~l~l~~n~l~  182 (664)
                      ..+..-+.|+.|+|++|   .+..    .|-..+..-+.|+.|+++.|...
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            23444556888888765   2322    24444556678888888876654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.16  E-value=0.044  Score=57.86  Aligned_cols=106  Identities=12%  Similarity=0.084  Sum_probs=79.3

Q ss_pred             cEEEEEeCCCCccccccccccCCCCCCEEEccCCccc-----ccCCcccCCCCCCCEEEeecCcccccCCccccCCcccc
Q 006019           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFS-----GIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLT  148 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~-----g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~  148 (664)
                      .++.+.|. +++.---...+.++++|+.++|.+|.+.     -.-+..|.+|++|+.++|. |+++---...|.+|++|+
T Consensus       249 ~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~  326 (401)
T 4fdw_A          249 GITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVT  326 (401)
T ss_dssp             CCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCC
T ss_pred             CccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCcc
Confidence            67788884 4455322456889999999999998875     2334678999999999999 456633335678899999


Q ss_pred             eeecccCcccccCCccccCCCCCCEeeCCCCcccc
Q 006019          149 ILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (664)
Q Consensus       149 ~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g  183 (664)
                      .++|..| ++--=+..|.++ +|+.+++++|.+..
T Consensus       327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~  359 (401)
T 4fdw_A          327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ  359 (401)
T ss_dssp             EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred             EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence            9999766 553334467788 99999999997754

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=94.31  E-value=0.21  Score=51.22  Aligned_cols=31  Identities=10%  Similarity=0.009  Sum_probs=27.1

Q ss_pred             CCeEEeCcCCCCeEecCCCceEecccCchhh
Q 006019          496 PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  526 (664)
Q Consensus       496 ~~ivHrDLk~~NILld~~~~~kl~DfGla~~  526 (664)
                      +.++|+|+.+.||++++++.+.|.||+.+..
T Consensus       206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~  236 (339)
T 3i1a_A          206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPML  236 (339)
T ss_dssp             CEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred             ceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence            4599999999999999888899999986554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=93.91  E-value=0.022  Score=53.41  Aligned_cols=91  Identities=18%  Similarity=0.168  Sum_probs=66.3

Q ss_pred             ccccccCCCCCCEEEccCC-ccccc----CCcccCCCCCCCEEEeecCccccc----CCccccCCcccceeecccCcccc
Q 006019           89 LAPEIQSLTHIKSIILRNN-SFSGI----IPEGFGELEELEVLDFGHNNFSGP----LPNDLGINHSLTILLLDNNDFVG  159 (664)
Q Consensus        89 ip~~~~~l~~L~~l~L~~N-~l~g~----ip~~~~~l~~L~~L~l~~N~l~g~----ip~~~~~~~~L~~l~l~~N~~~g  159 (664)
                      +...+.+-+.|+.|+|++| .+...    +-..+..-+.|+.|+|++|++...    |-..+..-+.|+.|+|++|.+..
T Consensus        33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            3344566789999999986 77532    445566678999999999999743    22334456789999999999974


Q ss_pred             c----CCccccCCCCCCEeeCCCC
Q 006019          160 S----LSPEIYKLQVLSESQVDEG  179 (664)
Q Consensus       160 ~----iP~~~~~l~~L~~l~l~~n  179 (664)
                      .    |-..+..-+.|++|+|++|
T Consensus       113 ~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          113 ELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHHHHhhCCceeEEECCCC
Confidence            3    3444556677999999865

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=90.87  E-value=0.74  Score=48.30  Aligned_cols=29  Identities=21%  Similarity=0.268  Sum_probs=24.3

Q ss_pred             eEEeCcCCCCeEe------cCCCceEecccCchhh
Q 006019          498 IAHNYLNSSAVHL------TEDYAAKLSDLSFWNE  526 (664)
Q Consensus       498 ivHrDLk~~NILl------d~~~~~kl~DfGla~~  526 (664)
                      ++|+|+.+.|||+      +++..++++||-++..
T Consensus       246 fcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~  280 (401)
T 3g15_A          246 FCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY  280 (401)
T ss_dssp             EECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred             eEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence            5799999999999      4567899999987653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=90.22  E-value=0.51  Score=49.28  Aligned_cols=101  Identities=7%  Similarity=0.158  Sum_probs=71.4

Q ss_pred             cEEEEEeCCCCcccccc-ccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCC-ccccCCcccceee
Q 006019           74 KVVNLNLKDLCLEGTLA-PEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP-NDLGINHSLTILL  151 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip-~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip-~~~~~~~~L~~l~  151 (664)
                      .++.+.+.++-.  .|. ..+.+++.|+.+.+. +.+.-.-...|.+|.+|+.++|..| ++ .|. ..|.+|.+|+.+.
T Consensus       266 ~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~  340 (394)
T 4gt6_A          266 YLASVKMPDSVV--SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIA  340 (394)
T ss_dssp             SCCEEECCTTCC--EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEE
T ss_pred             cccEEecccccc--eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEE
Confidence            456666654432  122 357789999999996 4455333456889999999999865 44 343 4678899999999


Q ss_pred             cccCcccccCCc-cccCCCCCCEeeCCCCcc
Q 006019          152 LDNNDFVGSLSP-EIYKLQVLSESQVDEGQL  181 (664)
Q Consensus       152 l~~N~~~g~iP~-~~~~l~~L~~l~l~~n~l  181 (664)
                      |..+ ++ .|.. .|.++++|+.+++.+|..
T Consensus       341 ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          341 IPSS-VT-KIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             ECTT-CC-BCCGGGGTTCTTCCEEEESSCHH
T ss_pred             ECcc-cC-EEhHhHhhCCCCCCEEEECCcee
Confidence            9765 44 5554 577999999999988754

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=89.88  E-value=0.85  Score=47.13  Aligned_cols=102  Identities=13%  Similarity=0.102  Sum_probs=61.3

Q ss_pred             cEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCC-ccccCCcccceeec
Q 006019           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP-NDLGINHSLTILLL  152 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip-~~~~~~~~L~~l~l  152 (664)
                      .+..+.+..+ +.-.-...+.++..|+.+.+..+ +.-.-...|.++.+|+.+.+..+ +. .++ ..+.++.+|+.+.+
T Consensus       218 ~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l  293 (379)
T 4h09_A          218 NLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVM  293 (379)
T ss_dssp             SCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEE
T ss_pred             ccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccccccccc
Confidence            3445555432 22112234667778888887665 44223445677778888877654 33 233 34667788888888


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCC
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEG  179 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n  179 (664)
                      .+|.++--=...|.++.+|+.+.|..+
T Consensus       294 ~~~~i~~I~~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          294 DNSAIETLEPRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             CCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred             cccccceehhhhhcCCCCCCEEEcCcc
Confidence            777766222345667788888887644

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=89.83  E-value=0.64  Score=43.93  Aligned_cols=97  Identities=12%  Similarity=0.186  Sum_probs=62.2

Q ss_pred             ChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHh-hcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhhhhhcccc
Q 006019          459 TLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM-HQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSK  537 (664)
Q Consensus       459 sL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yL-H~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~~~~~~~p  537 (664)
                      +|.+.|.. ...+++..+...++.|.+.+|.-+ +...+  ..+=..+..|++..+|.+...+ ..+.   .......+|
T Consensus        34 SL~eIL~~-~~~PlsEEqaWALc~Qc~~~L~~~~~~~~~--~~~i~~~~~i~l~~dG~V~f~~-~~s~---~~~~~~~~p  106 (229)
T 2yle_A           34 SLEEILRL-YNQPINEEQAWAVCYQCCGSLRAAARRRQP--RHRVRSAAQIRVWRDGAVTLAP-AADD---AGEPPPVAG  106 (229)
T ss_dssp             EHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHHHHHTTCC--CCCCCSGGGEEEETTSCEEECC-C---------------
T ss_pred             cHHHHHHH-cCCCcCHHHHHHHHHHHHHHHHhhhhcccC--CceecCCcceEEecCCceeccc-cccc---ccccCCCCh
Confidence            67788763 457899999999999999988766 22221  1222356899999999998875 2211   111122344


Q ss_pred             cccCCCCCCcCCcchhhHHHHHHHHh
Q 006019          538 KLSSAPSASLESNVYNFGVLLFEMVT  563 (664)
Q Consensus       538 e~~~~~~~s~ksDVySfGvvl~El~t  563 (664)
                      +... ...+.+.=|||+|+++|.-+-
T Consensus       107 e~~~-~~~te~~~IysLG~tLY~ALD  131 (229)
T 2yle_A          107 KLGY-SQCMETEVIESLGIIIYKALD  131 (229)
T ss_dssp             CCSS-SSSCHHHHHHHHHHHHHHHHT
T ss_pred             hhcc-ccchHHHHHHHHHHHHHHHhh
Confidence            4432 344678889999999999886

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=89.07  E-value=1.1  Score=47.16  Aligned_cols=73  Identities=16%  Similarity=0.101  Sum_probs=45.5

Q ss_pred             cccccCCCeEEEEEEECC--------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCc-ccceEEEEecCCCc
Q 006019          376 NVIGSSPIGTVYKGTLSN--------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN-FVNLIGFCEEEEPF  446 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~--------~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~n-iv~l~g~~~~~~~~  446 (664)
                      +.+..|-...+|+....+        +..+.+|+........      .+-.+|..+++.+.-.+ ..++++.+  .+  
T Consensus        76 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t~~~------idR~~E~~~l~~L~~~gi~P~l~~~~--~~--  145 (424)
T 3mes_A           76 KQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVGKF------YDSKVELDVFRYLSNINIAPNIIADF--PE--  145 (424)
T ss_dssp             EEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC-CC------CCHHHHHHHHHHHHHTTSSCCEEEEE--TT--
T ss_pred             EEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCcchh------cCHHHHHHHHHHHHhcCCCCCEEEEc--CC--
Confidence            457778889999998763        5677777753321111      12346777777764223 34566543  22  


Q ss_pred             eeEEEEEecCCCCh
Q 006019          447 TRMMVFEYAPNGTL  460 (664)
Q Consensus       447 ~~~lV~Ey~~~GsL  460 (664)
                        ++|+||+++..|
T Consensus       146 --~~I~efI~G~~l  157 (424)
T 3mes_A          146 --GRIEEFIDGEPL  157 (424)
T ss_dssp             --EEEEECCCSEEC
T ss_pred             --CEEEEEeCCccC
Confidence              689999998664

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=88.09  E-value=1.2  Score=46.49  Aligned_cols=83  Identities=14%  Similarity=0.191  Sum_probs=62.3

Q ss_pred             cccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCC-ccccCCcccceeecccCcccccCC-ccccCCC
Q 006019           92 EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP-NDLGINHSLTILLLDNNDFVGSLS-PEIYKLQ  169 (664)
Q Consensus        92 ~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip-~~~~~~~~L~~l~l~~N~~~g~iP-~~~~~l~  169 (664)
                      ++.+++.|+.+.+.++-.. .-...|.++++|+.+.+. +.++ .|+ ..|.++.+|+.++|..| ++ .|. ..|.++.
T Consensus       260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~  334 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCE  334 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCT
T ss_pred             eeeecccccEEecccccce-ecCcccccccccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCC
Confidence            5678899999999766543 234568899999999996 4455 344 45778999999999865 44 343 4577899


Q ss_pred             CCCEeeCCCC
Q 006019          170 VLSESQVDEG  179 (664)
Q Consensus       170 ~L~~l~l~~n  179 (664)
                      +|+.+.+..+
T Consensus       335 ~L~~i~ip~s  344 (394)
T 4gt6_A          335 QLERIAIPSS  344 (394)
T ss_dssp             TCCEEEECTT
T ss_pred             CCCEEEECcc
Confidence            9999999754

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=87.51  E-value=0.82  Score=47.65  Aligned_cols=81  Identities=11%  Similarity=0.030  Sum_probs=48.3

Q ss_pred             cccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCC-ccccCCcccceeecccCcccccCC-ccccCCC
Q 006019           92 EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP-NDLGINHSLTILLLDNNDFVGSLS-PEIYKLQ  169 (664)
Q Consensus        92 ~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip-~~~~~~~~L~~l~l~~N~~~g~iP-~~~~~l~  169 (664)
                      .+..+..|+.+.+..+.+.   ...+..+.+|+.+.+..+ ++ .|+ ..|.++.+|+.++|.++ ++ .|+ ..|.+++
T Consensus       271 ~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~  343 (394)
T 4fs7_A          271 LFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCT  343 (394)
T ss_dssp             TTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCT
T ss_pred             ccccccccceeccCceeec---cccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCC
Confidence            4556677777766655432   234566777777777654 33 233 34566777777777644 33 343 3456777


Q ss_pred             CCCEeeCCCC
Q 006019          170 VLSESQVDEG  179 (664)
Q Consensus       170 ~L~~l~l~~n  179 (664)
                      +|+.+++..|
T Consensus       344 ~L~~i~lp~~  353 (394)
T 4fs7_A          344 SLSNINFPLS  353 (394)
T ss_dssp             TCCEECCCTT
T ss_pred             CCCEEEECcc
Confidence            7777777655

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=87.31  E-value=0.82  Score=47.69  Aligned_cols=83  Identities=11%  Similarity=0.073  Sum_probs=62.8

Q ss_pred             cccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCC-ccccCCcccceeecccCcccccCC-ccccCCC
Q 006019           92 EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP-NDLGINHSLTILLLDNNDFVGSLS-PEIYKLQ  169 (664)
Q Consensus        92 ~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip-~~~~~~~~L~~l~l~~N~~~g~iP-~~~~~l~  169 (664)
                      .+..+.+|+.+.+.++ +.-.-...|.+|++|+.++|..+ ++ .|+ ..|.+|.+|+.+++..| ++ .|+ ..|.++.
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~  366 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCI  366 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCT
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCC
Confidence            4678899999999765 55333456889999999999754 55 443 46788999999999877 55 444 4577999


Q ss_pred             CCCEeeCCCC
Q 006019          170 VLSESQVDEG  179 (664)
Q Consensus       170 ~L~~l~l~~n  179 (664)
                      +|+.+++..|
T Consensus       367 ~L~~i~lp~~  376 (394)
T 4fs7_A          367 NLKKVELPKR  376 (394)
T ss_dssp             TCCEEEEEGG
T ss_pred             CCCEEEECCC
Confidence            9999998754

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=85.23  E-value=0.1  Score=56.04  Aligned_cols=63  Identities=6%  Similarity=0.061  Sum_probs=18.3

Q ss_pred             hhcccccCCCeEEEEEEECC-CcEEEE------EEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEec
Q 006019          374 FSNVIGSSPIGTVYKGTLSN-GVEIAV------ASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEE  442 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~-~~~vav------k~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~  442 (664)
                      +.+.||   ||.||+|.+.. ..+|||      |......   ........|.+|..+++..+|+|+++.++|...
T Consensus       146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~---~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~~  215 (463)
T 3cxl_A          146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDG---VSEKRLTSLVRRATLKENEQIPKYEKIHNFKVH  215 (463)
T ss_dssp             STTTSS---BCCC---------CCBGGGC--------------------------------------CBCCCEEEE
T ss_pred             ccccCC---chhhhcccccccCCchhhhhccCcccccccc---ccccccccccccccccccccccccCCCcceEEe
Confidence            345676   99999999864 357777      5443211   112334578899999999999999999988754

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=84.00  E-value=0.29  Score=33.20  Aligned_cols=27  Identities=33%  Similarity=0.469  Sum_probs=13.1

Q ss_pred             EEEehHHHHHHHHH--HHHHhhheeeccc
Q 006019          311 AILGGVIGGAILLV--ATVGIYLCRCNKV  337 (664)
Q Consensus       311 ~i~~~~~~~~~~~~--~~~~~~~~~~~~~  337 (664)
                      +|.+++++++++++  +++.++++|+++.
T Consensus        11 aIA~gVVgGv~~v~ii~~~~~~~~RRRr~   39 (44)
T 2l2t_A           11 LIAAGVIGGLFILVIVGLTFAVYVRRKSI   39 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             eEEEeehHHHHHHHHHHHHHHHHhhhhhh
Confidence            45667776655542  2223444444443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=82.21  E-value=3.3  Score=42.54  Aligned_cols=87  Identities=11%  Similarity=0.074  Sum_probs=61.7

Q ss_pred             cccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecccCcccccCCc-cccCCCC
Q 006019           92 EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSP-EIYKLQV  170 (664)
Q Consensus        92 ~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~-~~~~l~~  170 (664)
                      .+.....|+.+.+..+ +.-.-...+.++..|+.+.+..+ ++--=...+.++.+|+.+.+..+ +. .|+. .+..+++
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~  287 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSN  287 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTT
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccc
Confidence            4566788888888655 33233456788999999999876 44222345677889999998755 33 3443 4678999


Q ss_pred             CCEeeCCCCccc
Q 006019          171 LSESQVDEGQLS  182 (664)
Q Consensus       171 L~~l~l~~n~l~  182 (664)
                      |+.+.+.++.++
T Consensus       288 L~~i~l~~~~i~  299 (379)
T 4h09_A          288 LTKVVMDNSAIE  299 (379)
T ss_dssp             CCEEEECCTTCC
T ss_pred             cccccccccccc
Confidence            999999887765

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=80.20  E-value=0.59  Score=31.76  Aligned_cols=13  Identities=38%  Similarity=0.790  Sum_probs=7.5

Q ss_pred             EEEehHHHHHHHH
Q 006019          311 AILGGVIGGAILL  323 (664)
Q Consensus       311 ~i~~~~~~~~~~~  323 (664)
                      +|.++++++++++
T Consensus        12 ~IA~gVVgGv~~~   24 (44)
T 2ks1_B           12 SIATGMVGALLLL   24 (44)
T ss_dssp             SSTHHHHHHHHHH
T ss_pred             eEEeehhHHHHHH
Confidence            3556676655554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	664
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	3e-47
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	2e-42
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	4e-42
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	2e-41
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	2e-40
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	4e-40
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	3e-39
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	7e-39
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-38
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	4e-38
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	1e-37
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	2e-37
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	3e-37
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	4e-37
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	4e-36
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	5e-36
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	8e-36
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	9e-35
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	1e-34
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	2e-34
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	7e-34
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	2e-33
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	4e-33
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	1e-32
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	1e-32
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	2e-32
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	5e-32
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	5e-32
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	6e-32
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	9e-32
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	1e-31
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	8e-31
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	9e-31
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	4e-30
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	6e-30
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	1e-29
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	1e-28
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	9e-28
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	2e-27
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	3e-27
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	1e-26
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	2e-26
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	2e-26
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	4e-26
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	7e-26
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	8e-26
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	1e-25
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	3e-25
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	5e-25
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	1e-24
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	2e-24
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	6e-24
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	1e-23
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	3e-22
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	1e-20
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	1e-20
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	3e-20
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	7e-19
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	8e-18
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	2e-17
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	1e-15
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	8e-14
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	5e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.003
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  165 bits (419), Expect = 3e-47
 Identities = 62/277 (22%), Positives = 116/277 (41%), Gaps = 32/277 (11%)

Query: 374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF 433
               IGS   GTVYKG     V + + +V+  + +         F+ ++  L K  H N 
Sbjct: 12  VGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQ-----LQAFKNEVGVLRKTRHVNI 66

Query: 434 VNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ 493
           +  +G+    +     +V ++    +L+ H+HI E+   +    + IA   A  ++++H 
Sbjct: 67  LLFMGYSTAPQLA---IVTQWCEGSSLYHHLHIIET-KFEMIKLIDIARQTAQGMDYLHA 122

Query: 494 LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE--------------MAATSKKL 539
               I H  L S+ + L ED   K+ D       +                 MA    ++
Sbjct: 123 --KSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRM 180

Query: 540 SSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS 599
                 S +S+VY FG++L+E++TG+LPY   N +  D     +      + ++ P LS 
Sbjct: 181 QDKNPYSFQSDVYAFGIVLYELMTGQLPY--SNINNRDQIIFMVG-----RGYLSPDLSK 233

Query: 600 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
                 + +  L+  C++   ++RP    I A +  +
Sbjct: 234 VRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELL 270

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  152 bits (385), Expect = 2e-42
 Identities = 59/274 (21%), Positives = 110/274 (40%), Gaps = 32/274 (11%)

Query: 372 EDFS--NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN 429
           ++      IG    G V  G    G ++AV  +   +           F  +   ++++ 
Sbjct: 7   KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDATAQ-------AFLAEASVMTQLR 58

Query: 430 HKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLE 489
           H N V L+G   EE+     +V EY   G+L +++  +    L     L+ ++ +   +E
Sbjct: 59  HSNLVQLLGVIVEEKGG-LYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAME 117

Query: 490 HMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAP------ 543
           ++        H  L +  V ++ED  AK+SD     E +  +         +AP      
Sbjct: 118 YLEG--NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREK 175

Query: 544 SASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE 602
             S +S+V++FG+LL+E+ + GR+PY      L+D       G +              +
Sbjct: 176 KFSTKSDVWSFGILLWEIYSFGRVPY--PRIPLKDVVPRVEKGYKM----------DAPD 223

Query: 603 EQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
                + E++K+C   D   RP+   +   L  I
Sbjct: 224 GCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHI 257

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  151 bits (382), Expect = 4e-42
 Identities = 53/273 (19%), Positives = 108/273 (39%), Gaps = 32/273 (11%)

Query: 374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF 433
               +G+   G V+ G  +   ++AV S+   S           F  + + + ++ H+  
Sbjct: 17  LVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPD------AFLAEANLMKQLQHQRL 70

Query: 434 VNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ 493
           V L     +E  +   ++ EY  NG+L + +       L     L +A  +A  +  + +
Sbjct: 71  VRLYAVVTQEPIY---IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 127

Query: 494 LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS----APSA---- 545
            N    H  L ++ + +++  + K++D      I   E  A           AP A    
Sbjct: 128 RN--YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYG 185

Query: 546 --SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 603
             +++S+V++FG+LL E+VT                   ++  + +Q           + 
Sbjct: 186 TFTIKSDVWSFGILLTEIVTHGRIPY-----------PGMTNPEVIQNLERGYRMVRPDN 234

Query: 604 QLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
             E L +L++ C +  PE RPT   + ++L + 
Sbjct: 235 CPEELYQLMRLCWKERPEDRPTFDYLRSVLEDF 267

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  150 bits (380), Expect = 2e-41
 Identities = 50/297 (16%), Positives = 104/297 (35%), Gaps = 48/297 (16%)

Query: 377 VIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNL 436
            IG    G V++G    G E+AV   S    + W          +I     + H+N +  
Sbjct: 10  SIGKGRFGEVWRGKW-RGEEVAVKIFSSREERSW------FREAEIYQTVMLRHENILGF 62

Query: 437 IGFCEEEEP--FTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL 494
           I    ++        +V +Y  +G+LF++++      +     +++A+  A  L H+H  
Sbjct: 63  IAADNKDNGTWTQLWLVSDYHEHGSLFDYLN---RYTVTVEGMIKLALSTASGLAHLHME 119

Query: 495 ------NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA-------------------M 529
                  P IAH  L S  + + ++    ++DL                          M
Sbjct: 120 IVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYM 179

Query: 530 AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG--------SLEDWAAD 581
           A              +   +++Y  G++ +E+        +              D + +
Sbjct: 180 APEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVE 239

Query: 582 YLSGVQPLQQFVDPTLSS--FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
            +  V   +Q + P + +     E L  + ++++ C  A+   R T   I   L ++
Sbjct: 240 EMRKVV-CEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQL 295

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  148 bits (374), Expect = 2e-40
 Identities = 58/280 (20%), Positives = 109/280 (38%), Gaps = 36/280 (12%)

Query: 374 FSNVIGSSPIGTVYKGTLSN----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN 429
           F+ VIG    G VY GTL +     +  AV S++  +          QF  +   +   +
Sbjct: 31  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVS----QFLTEGIIMKDFS 86

Query: 430 HKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLE 489
           H N ++L+G C   E  + ++V  Y  +G L   I  + + +      +   + +A  ++
Sbjct: 87  HPNVLSLLGICLRSE-GSPLVVLPYMKHGDLRNFIRNE-THNPTVKDLIGFGLQVAKGMK 144

Query: 490 HMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSA---- 545
            +        H  L +    L E +  K++D     ++   E  +   K  +        
Sbjct: 145 FLAS--KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMA 202

Query: 546 ---------SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT 596
                    + +S+V++FGVLL+E++T   P   D  +  D     L G + L     P 
Sbjct: 203 LESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV-NTFDITVYLLQGRRLL----QPE 257

Query: 597 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
                    + L E++  C     E RP+  ++ + +  I
Sbjct: 258 YCP------DPLYEVMLKCWHPKAEMRPSFSELVSRISAI 291

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  145 bits (367), Expect = 4e-40
 Identities = 58/285 (20%), Positives = 117/285 (41%), Gaps = 37/285 (12%)

Query: 362 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKK 421
           +  SEL      F   IGS   G V+ G   N  ++A+ ++   +        E  F ++
Sbjct: 2   IDPSELT-----FVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS------EEDFIEE 50

Query: 422 IDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIA 481
            + + K++H   V L G C E+ P    +VFE+  +G L +++   +         L + 
Sbjct: 51  AEVMMKLSHPKLVQLYGVCLEQAPI--CLVFEFMEHGCLSDYLR-TQRGLFAAETLLGMC 107

Query: 482 MGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS 541
           + +   + ++ +    + H  L +    + E+   K+SD      +   +  +++     
Sbjct: 108 LDVCEGMAYLEE--ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFP 165

Query: 542 ----AP------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQ 591
               +P        S +S+V++FGVL++E+ +       +N S  +   D  +G +    
Sbjct: 166 VKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIP-YENRSNSEVVEDISTGFRL--- 221

Query: 592 FVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
              P L+S        + +++  C +  PE RP    +   L EI
Sbjct: 222 -YKPRLAS------THVYQIMNHCWKERPEDRPAFSRLLRQLAEI 259

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (361), Expect = 3e-39
 Identities = 44/275 (16%), Positives = 100/275 (36%), Gaps = 34/275 (12%)

Query: 373 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN 432
            F   +G+   G V  G      ++A+  +   S        E +F ++   +  ++H+ 
Sbjct: 7   TFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS------EDEFIEEAKVMMNLSHEK 60

Query: 433 FVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMH 492
            V L G C ++ P    ++ EY  NG L  ++             L +   +   +E++ 
Sbjct: 61  LVQLYGVCTKQRPI--FIITEYMANGCLLNYLREMRH-RFQTQQLLEMCKDVCEAMEYLE 117

Query: 493 QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLE---- 548
                  H  L +    + +    K+SD      +   E  ++         +  E    
Sbjct: 118 S--KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMY 175

Query: 549 ------SNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD 601
                 S+++ FGVL++E+ + G++PY            +  +  +  +           
Sbjct: 176 SKFSSKSDIWAFGVLMWEIYSLGKMPY------------ERFTNSETAEHIAQGLRLYRP 223

Query: 602 EEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
               E +  ++ SC     ++RPT + + + + ++
Sbjct: 224 HLASEKVYTIMYSCWHEKADERPTFKILLSNILDV 258

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  142 bits (360), Expect = 7e-39
 Identities = 59/289 (20%), Positives = 112/289 (38%), Gaps = 34/289 (11%)

Query: 360 PKLKRSELEAACEDFS--NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQ 417
             L +   E   E       +G    G V+ GT +    +A+ ++   +           
Sbjct: 5   QGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPE------A 58

Query: 418 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMR 477
           F ++   + K+ H+  V L     EE  +   +V EY   G+L + +  +  ++L     
Sbjct: 59  FLQEAQVMKKLRHEKLVQLYAVVSEEPIY---IVTEYMSKGSLLDFLKGETGKYLRLPQL 115

Query: 478 LRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSK 537
           + +A  +A  + ++ ++N    H  L ++ + + E+   K++D      I   E  A   
Sbjct: 116 VDMAAQIASGMAYVERMN--YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQG 173

Query: 538 KLSS----AP------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ 587
                   AP        +++S+V++FG+LL E+ T          + E           
Sbjct: 174 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREV---------- 223

Query: 588 PLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
            L Q           E  E+L +L+  C R +PE+RPT   + A L + 
Sbjct: 224 -LDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDY 271

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  141 bits (356), Expect = 2e-38
 Identities = 52/275 (18%), Positives = 96/275 (34%), Gaps = 32/275 (11%)

Query: 372 EDFS--NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV 428
           ED+     IG+   G   K    S+G  +    +   S  +  K        +++ L ++
Sbjct: 4   EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQ---MLVSEVNLLREL 60

Query: 429 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH--IKESEHLDWGMRLRIAMGMAY 486
            H N V       +    T  +V EY   G L   I    KE ++LD    LR+   +  
Sbjct: 61  KHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTL 120

Query: 487 CLEHMHQLN---PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLS--- 540
            L+  H+ +     + H  L  + V L      KL D      +      A +   +   
Sbjct: 121 ALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYY 180

Query: 541 SAP------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 594
            +P      S + +S++++ G LL+E+     P+               S  +   +  +
Sbjct: 181 MSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPF------------TAFSQKELAGKIRE 228

Query: 595 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
                      + L E+I   +      RP++ +I
Sbjct: 229 GKFRRIPYRYSDELNEIITRMLNLKDYHRPSVEEI 263

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  141 bits (355), Expect = 4e-38
 Identities = 53/286 (18%), Positives = 115/286 (40%), Gaps = 37/286 (12%)

Query: 362 LKRSELEAACEDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRK 420
           ++R+++        + +G    G VY+G      + +AV ++   + +        +F K
Sbjct: 14  MERTDIT-----MKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME------VEEFLK 62

Query: 421 KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRI 480
           +   + ++ H N V L+G C  E PF  +   E+   G L +++     + +   + L +
Sbjct: 63  EAAVMKEIKHPNLVQLLGVCTREPPFYIIT--EFMTYGNLLDYLRECNRQEVSAVVLLYM 120

Query: 481 AMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLS 540
           A  ++  +E++ +      H  L +    + E++  K++D      +      A +    
Sbjct: 121 ATQISSAMEYLEK--KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKF 178

Query: 541 ----SAPS------ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQ 590
               +AP        S++S+V+ FGVLL+E+ T  +                +   Q  +
Sbjct: 179 PIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY-----------PGIDLSQVYE 227

Query: 591 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
                      E   E + EL+++C + +P  RP+  +I      +
Sbjct: 228 LLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 273

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  139 bits (352), Expect = 1e-37
 Identities = 55/318 (17%), Positives = 110/318 (34%), Gaps = 62/318 (19%)

Query: 360 PKLKRSELEAACEDFS--NVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWP 411
           PKL    LE    +      IG    G V++              +AV  +     ++  
Sbjct: 3   PKLL--SLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLK----EEAS 56

Query: 412 KNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH------ 465
            +++  F+++   +++ ++ N V L+G C   +P    ++FEY   G L E +       
Sbjct: 57  ADMQADFQREAALMAEFDNPNIVKLLGVCAVGKP--MCLLFEYMAYGDLNEFLRSMSPHT 114

Query: 466 ----------------IKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVH 509
                                 L    +L IA  +A  + ++ +      H  L +    
Sbjct: 115 VCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERK--FVHRDLATRNCL 172

Query: 510 LTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAP-----------SASLESNVYNFGVLL 558
           + E+   K++D      I  A+        +                + ES+V+ +GV+L
Sbjct: 173 VGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVL 232

Query: 559 FEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRA 618
           +E+ +  L                ++  + +    D  + +  E     L  L++ C   
Sbjct: 233 WEIFSYGLQPYYG-----------MAHEEVIYYVRDGNILACPENCPLELYNLMRLCWSK 281

Query: 619 DPEKRPTMRDIAAILREI 636
            P  RP+   I  IL+ +
Sbjct: 282 LPADRPSFCSIHRILQRM 299

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (349), Expect = 2e-37
 Identities = 54/274 (19%), Positives = 106/274 (38%), Gaps = 32/274 (11%)

Query: 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 435
             +GS   GTV KG       +   +V +   +     L+ +   + + + ++++   V 
Sbjct: 13  KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVR 72

Query: 436 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLN 495
           +IG CE E   + M+V E A  G L +++   ++ H+     + +   ++  ++++ + N
Sbjct: 73  MIGICEAE---SWMLVMEMAELGPLNKYLQ--QNRHVKDKNIIELVHQVSMGMKYLEESN 127

Query: 496 PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS------AP------ 543
               H  L +  V L   + AK+SD      +   E    ++          AP      
Sbjct: 128 --FVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYY 185

Query: 544 SASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE 602
             S +S+V++FGVL++E  + G+ PY              + G +               
Sbjct: 186 KFSSKSDVWSFGVLMWEAFSYGQKPY------------RGMKGSEVTAMLEKGERMGCPA 233

Query: 603 EQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
                + +L+  C   D E RP    +   LR  
Sbjct: 234 GCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY 267

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (347), Expect = 3e-37
 Identities = 59/268 (22%), Positives = 108/268 (40%), Gaps = 29/268 (10%)

Query: 374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKN 432
           F   IG     TVYKG      VE+A   +     +   K+   +F+++ + L  + H N
Sbjct: 13  FDIEIGRGSFKTVYKGLDTETTVEVAWCELQD---RKLTKSERQRFKEEAEMLKGLQHPN 69

Query: 433 FVNLIGFCEE--EEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEH 490
            V      E   +     ++V E   +GTL  ++     + +   +       +   L+ 
Sbjct: 70  IVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLK--RFKVMKIKVLRSWCRQILKGLQF 127

Query: 491 MHQLNPPIAHNYLNSSAVHLT-EDYAAKLSDL---SFWNEIAMAEMAATSKKLSSAP--- 543
           +H   PPI H  L    + +T    + K+ DL   +         +  T + +  AP   
Sbjct: 128 LHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFM--APEMY 185

Query: 544 --SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD 601
                   +VY FG+ + EM T   PY  +  +         SGV+P          SFD
Sbjct: 186 EEKYDESVDVYAFGMCMLEMATSEYPYS-ECQNAAQIYRRVTSGVKPA---------SFD 235

Query: 602 EEQLETLGELIKSCVRADPEKRPTMRDI 629
           +  +  + E+I+ C+R + ++R +++D+
Sbjct: 236 KVAIPEVKEIIEGCIRQNKDERYSIKDL 263

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (347), Expect = 4e-37
 Identities = 47/275 (17%), Positives = 101/275 (36%), Gaps = 38/275 (13%)

Query: 378 IGSSPIGTVYKGTL---SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV 434
           +G    G+V +G        +++A+  +   + K   +    +  ++   + ++++   V
Sbjct: 17  LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTE----EMMREAQIMHQLDNPYIV 72

Query: 435 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL 494
            LIG C+ E      +V E A  G L + +   + E +       +   ++  ++++ + 
Sbjct: 73  RLIGVCQAEALM---LVMEMAGGGPLHKFLV-GKREEIPVSNVAELLHQVSMGMKYLEEK 128

Query: 495 NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAP----------- 543
           N    H  L +  V L   + AK+SD      +   +   T++     P           
Sbjct: 129 N--FVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINF 186

Query: 544 -SASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD 601
              S  S+V+++GV ++E ++ G+ PY              + G + +            
Sbjct: 187 RKFSSRSDVWSYGVTMWEALSYGQKPY------------KKMKGPEVMAFIEQGKRMECP 234

Query: 602 EEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
            E    L  L+  C     E RP    +   +R  
Sbjct: 235 PECPPELYALMSDCWIYKWEDRPDFLTVEQRMRAC 269

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  135 bits (342), Expect = 4e-36
 Identities = 48/263 (18%), Positives = 83/263 (31%), Gaps = 28/263 (10%)

Query: 376 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV 434
             IG    G VY    + N   +A+  +S +  +           K++  L K+ H N +
Sbjct: 21  REIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQS--NEKWQDIIKEVRFLQKLRHPNTI 78

Query: 435 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL 494
              G    E      +V EY            K  + L       +  G    L ++H  
Sbjct: 79  QYRGCYLREHTA--WLVMEYCLGSASDLLEVHK--KPLQEVEIAAVTHGALQGLAYLHSH 134

Query: 495 NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE--------MAATSKKLSSAPSAS 546
           N  + H  + +  + L+E    KL D    + +A A         MA             
Sbjct: 135 N--MIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVGTPYWMAPEVILAMDEGQYD 192

Query: 547 LESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE 606
            + +V++ G+   E+   + P    N +             P         S       E
Sbjct: 193 GKVDVWSLGITCIELAERKPPL--FNMNAMSALYHIAQNESPA--LQSGHWS-------E 241

Query: 607 TLGELIKSCVRADPEKRPTMRDI 629
                + SC++  P+ RPT   +
Sbjct: 242 YFRNFVDSCLQKIPQDRPTSEVL 264

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (339), Expect = 5e-36
 Identities = 52/285 (18%), Positives = 109/285 (38%), Gaps = 29/285 (10%)

Query: 365 SELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAK-DWPKNLEVQFRKKID 423
           +E+  +C     VIG+   G VYKG L          V++ + K  + +   V F  +  
Sbjct: 2   TEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAG 61

Query: 424 TLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMG 483
            + + +H N + L G   + +P   M++ EY  NG   +    ++         + +  G
Sbjct: 62  IMGQFSHHNIIRLEGVISKYKPM--MIITEYMENGA-LDKFLREKDGEFSVLQLVGMLRG 118

Query: 484 MAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAP 543
           +A  ++++   N    H  L +  + +  +   K+SD      +     A  +      P
Sbjct: 119 IAAGMKYLA--NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIP 176

Query: 544 SASL------------ESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQ 591
                            S+V++FG++++E++T                   LS  + ++ 
Sbjct: 177 IRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERP-----------YWELSNHEVMKA 225

Query: 592 FVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
             D        +    + +L+  C + +  +RP   DI +IL ++
Sbjct: 226 INDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKL 270

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  134 bits (339), Expect = 8e-36
 Identities = 51/289 (17%), Positives = 104/289 (35%), Gaps = 36/289 (12%)

Query: 365 SELEAACEDFSNVIGSSPIGTVYKGTL--SNGVEIAVASVSVASAKDWPKNLEVQFRKKI 422
            E++ +C     VIG+   G V  G L      EI VA +    +    K     F  + 
Sbjct: 21  KEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVA-IKTLKSGYTEKQRR-DFLSEA 78

Query: 423 DTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAM 482
             + + +H N ++L G   +  P   M++ E+  NG+L   +   + +       + +  
Sbjct: 79  SIMGQFDHPNVIHLEGVVTKSTPV--MIITEFMENGSLDSFLRQNDGQF-TVIQLVGMLR 135

Query: 483 GMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS- 541
           G+A  ++++        H  L +  + +  +   K+SD      +       T       
Sbjct: 136 GIAAGMKYLAD--MNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGG 193

Query: 542 -------APSASL------ESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQ 587
                  AP A         S+V+++G++++E+++ G  PY              ++   
Sbjct: 194 KIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPY------------WDMTNQD 241

Query: 588 PLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
            +             +    L +L+  C + D   RP    I   L ++
Sbjct: 242 VINAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTLDKM 290

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (331), Expect = 9e-35
 Identities = 65/305 (21%), Positives = 122/305 (40%), Gaps = 48/305 (15%)

Query: 357 TGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLE 415
           T  P L  ++++     F +VIG    G V K  +  +G+ +  A   +       K+  
Sbjct: 2   TIYPVLDWNDIK-----FQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYAS--KDDH 54

Query: 416 VQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH--------- 465
             F  +++ L K+ +H N +NL+G CE        +  EYAP+G L + +          
Sbjct: 55  RDFAGELEVLCKLGHHPNIINLLGACEHRGY--LYLAIEYAPHGNLLDFLRKSRVLETDP 112

Query: 466 -----IKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD 520
                   +  L     L  A  +A  ++++ Q      H  L +  + + E+Y AK++D
Sbjct: 113 AFAIANSTASTLSSQQLLHFAADVARGMDYLSQ--KQFIHRDLAARNILVGENYVAKIAD 170

Query: 521 --LSFWNEIAMAEMAATSKKLSSAPSA------SLESNVYNFGVLLFEMVT-GRLPYLVD 571
             LS   E+ + +          A  +      +  S+V+++GVLL+E+V+ G  PY   
Sbjct: 171 FGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPY--C 228

Query: 572 NGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA 631
             +  +       G +                  + + +L++ C R  P +RP+   I  
Sbjct: 229 GMTCAELYEKLPQGYRL----------EKPLNCDDEVYDLMRQCWREKPYERPSFAQILV 278

Query: 632 ILREI 636
            L  +
Sbjct: 279 SLNRM 283

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (331), Expect = 1e-34
 Identities = 56/309 (18%), Positives = 102/309 (33%), Gaps = 57/309 (18%)

Query: 362 LKRSELEAACEDFSNVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWPKNLE 415
             R+ L      F   +G+   G V + T          + +AV  +  ++     +   
Sbjct: 20  FPRNRLS-----FGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTERE--- 71

Query: 416 VQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEH--- 471
                ++  LS + NH N VNL+G C    P   +++ EY   G L   +  K       
Sbjct: 72  -ALMSELKVLSYLGNHMNIVNLLGACTIGGP--TLVITEYCCYGDLLNFLRRKRDSFICS 128

Query: 472 -------------LDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKL 518
                        LD    L  +  +A  +  +   N    H  L +  + LT     K+
Sbjct: 129 KTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKN--CIHRDLAARNILLTHGRITKI 186

Query: 519 SDLSFWNEIAMAEMAATSKKLSSAP-----------SASLESNVYNFGVLLFEMVTGRLP 567
            D     +I                             + ES+V+++G+ L+E+ +    
Sbjct: 187 CDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSS 246

Query: 568 YLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMR 627
                     +      G + L            E     + +++K+C  ADP KRPT +
Sbjct: 247 PYPGMPVDSKFYKMIKEGFRML----------SPEHAPAEMYDIMKTCWDADPLKRPTFK 296

Query: 628 DIAAILREI 636
            I  ++ + 
Sbjct: 297 QIVQLIEKQ 305

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  130 bits (327), Expect = 2e-34
 Identities = 54/280 (19%), Positives = 102/280 (36%), Gaps = 37/280 (13%)

Query: 372 EDFS--NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWP----KNLEVQFRKKIDT 424
           E++    ++G      V +        E AV  + V     +     + L     K++D 
Sbjct: 3   ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDI 62

Query: 425 LSKVN-HKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMG 483
           L KV+ H N + L    E    F   +VF+    G LF+++   E   L      +I   
Sbjct: 63  LRKVSGHPNIIQLKDTYETNTFF--FLVFDLMKKGELFDYLT--EKVTLSEKETRKIMRA 118

Query: 484 MAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA--------------M 529
           +   +  +H+LN  I H  L    + L +D   KL+D  F  ++               +
Sbjct: 119 LLEVICALHKLN--IVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYL 176

Query: 530 AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL 589
           A          + P    E ++++ GV+++ ++ G  P+   +          +SG    
Sbjct: 177 APEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPF--WHRKQMLMLRMIMSGNYQF 234

Query: 590 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
                   S       +T+ +L+   +   P+KR T  + 
Sbjct: 235 GSPEWDDYS-------DTVKDLVSRFLVVQPQKRYTAEEA 267

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (322), Expect = 7e-34
 Identities = 53/279 (18%), Positives = 96/279 (34%), Gaps = 32/279 (11%)

Query: 373 DFSNVIGSSPIGTVYKGTL--SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH 430
                +G    G V +G     +G  ++VA   +             F ++++ +  ++H
Sbjct: 11  RLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDH 70

Query: 431 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEH 490
           +N + L G           MV E AP G+L + +  K   H   G   R A+ +A  + +
Sbjct: 71  RNLIRLYGVVLTPPMK---MVTELAPLGSLLDRLR-KHQGHFLLGTLSRYAVQVAEGMGY 126

Query: 491 MHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSA----- 545
           +        H  L +  + L      K+ D      +   +     ++    P A     
Sbjct: 127 LESKR--FIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPE 184

Query: 546 -------SLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL 597
                  S  S+ + FGV L+EM T G+ P+     +            + L        
Sbjct: 185 SLKTRTFSHASDTWMFGVTLWEMFTYGQEPW--IGLNGSQILHKIDKEGERL-------- 234

Query: 598 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
               E+  + +  ++  C    PE RPT   +   L E 
Sbjct: 235 -PRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEA 272

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (322), Expect = 2e-33
 Identities = 41/310 (13%), Positives = 102/310 (32%), Gaps = 62/310 (20%)

Query: 367 LEAACEDFS--NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKID 423
           +E   +DF   + +G+   G V+K +   +G+ +A   + +            Q  +++ 
Sbjct: 1   MELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRN----QIIRELQ 56

Query: 424 TLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMG 483
            L + N    V   G    +      +  E+   G+L + +   ++  +   +  ++++ 
Sbjct: 57  VLHECNSPYIVGFYGAFYSDGEI--SICMEHMDGGSLDQVLK--KAGRIPEQILGKVSIA 112

Query: 484 MAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA-------------MA 530
           +   L ++ + +  I H  +  S + +      KL D     ++              M+
Sbjct: 113 VIKGLTYLREKHK-IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMS 171

Query: 531 EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDN-------------GSLED 577
                    S        S++++ G+ L EM  GR P    +             G   +
Sbjct: 172 PERLQGTHYSVQ------SDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAE 225

Query: 578 WAADYLSGVQPLQQFVDPTLSSFDEEQL------------------ETLGELIKSCVRAD 619
                 +  +PL  +   +       +L                      + +  C+  +
Sbjct: 226 TPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKN 285

Query: 620 PEKRPTMRDI 629
           P +R  ++ +
Sbjct: 286 PAERADLKQL 295

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (316), Expect = 4e-33
 Identities = 48/279 (17%), Positives = 97/279 (34%), Gaps = 37/279 (13%)

Query: 373 DFSNVIGSSPIGTVYKGTLSN----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV 428
           +    IG    G V++G   +     + +A+ +    ++    +    +F ++  T+ + 
Sbjct: 10  ELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVRE----KFLQEALTMRQF 65

Query: 429 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCL 488
           +H + V LIG   E   +   ++ E    G L           LD    +  A  ++  L
Sbjct: 66  DHPHIVKLIGVITENPVW---IIMELCTLGELRSF-LQVRKYSLDLASLILYAYQLSTAL 121

Query: 489 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLE 548
            ++        H  + +  V ++ +   KL D      +  +     SK        + E
Sbjct: 122 AYLES--KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPE 179

Query: 549 ----------SNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL 597
                     S+V+ FGV ++E++  G  P+              +     + +  +   
Sbjct: 180 SINFRRFTSASDVWMFGVCMWEILMHGVKPF------------QGVKNNDVIGRIENGER 227

Query: 598 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
                    TL  L+  C   DP +RP   ++ A L  I
Sbjct: 228 LPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTI 266

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (313), Expect = 1e-32
 Identities = 47/268 (17%), Positives = 98/268 (36%), Gaps = 31/268 (11%)

Query: 372 EDFS--NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV 428
           EDF     +G    G VY      +   +A+  +  A  +     +E Q R++++  S +
Sbjct: 6   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK--AGVEHQLRREVEIQSHL 63

Query: 429 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCL 488
            H N + L G+  +       ++ EYAP GT++  +   +    D          +A  L
Sbjct: 64  RHPNILRLYGYFHDATRV--YLILEYAPLGTVYRELQ--KLSKFDEQRTATYITELANAL 119

Query: 489 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLS-SAP---- 543
            + H     + H  +    + L      K++D  +      +        L    P    
Sbjct: 120 SYCHSKR--VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIE 177

Query: 544 --SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD 601
                 + ++++ GVL +E + G+ P+  +  + ++              FV        
Sbjct: 178 GRMHDEKVDLWSLGVLCYEFLVGKPPF--EANTYQETYKRISRVEFTFPDFVTEGAR--- 232

Query: 602 EEQLETLGELIKSCVRADPEKRPTMRDI 629
                   +LI   ++ +P +RP +R++
Sbjct: 233 --------DLISRLLKHNPSQRPMLREV 252

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 1e-32
 Identities = 51/264 (19%), Positives = 101/264 (38%), Gaps = 32/264 (12%)

Query: 376 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV 434
             IG    GTVY    ++ G E+A+  +++          +     +I  + +  + N V
Sbjct: 26  EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK-----KELIINEILVMRENKNPNIV 80

Query: 435 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL 494
           N +      +     +V EY   G+L + +       +D G    +       LE +H  
Sbjct: 81  NYLDSYLVGDEL--WVVMEYLAGGSLTDVVT---ETCMDEGQIAAVCRECLQALEFLHSN 135

Query: 495 NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLS---SAP------SA 545
              + H  + S  + L  D + KL+D  F  +I   +   ++   +    AP      + 
Sbjct: 136 Q--VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAY 193

Query: 546 SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL 605
             + ++++ G++  EM+ G  PYL +N       A YL       +  +P          
Sbjct: 194 GPKVDIWSLGIMAIEMIEGEPPYLNEN----PLRALYLIATNGTPELQNP--EKLSAI-- 245

Query: 606 ETLGELIKSCVRADPEKRPTMRDI 629
               + +  C+  D EKR + +++
Sbjct: 246 --FRDFLNRCLDMDVEKRGSAKEL 267

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (313), Expect = 2e-32
 Identities = 42/269 (15%), Positives = 81/269 (30%), Gaps = 35/269 (13%)

Query: 376 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV 434
             +G    G VYK       V  A   +   S ++        +  +ID L+  +H N V
Sbjct: 18  GELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELE-----DYMVEIDILASCDHPNIV 72

Query: 435 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL 494
            L+     E      ++ E+   G +   +  +    L       +       L ++H  
Sbjct: 73  KLLDAFYYENNL--WILIEFCAGGAVDAVML-ELERPLTESQIQVVCKQTLDALNYLHDN 129

Query: 495 NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSK--------------KLS 540
              I H  L +  +  T D   KL+D     +         S               + S
Sbjct: 130 K--IIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETS 187

Query: 541 SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF 600
                  +++V++ G+ L EM     P+     +                   +P   + 
Sbjct: 188 KDRPYDYKADVWSLGITLIEMAEIEPPH--HELNPMRVLLKIAKS--------EPPTLAQ 237

Query: 601 DEEQLETLGELIKSCVRADPEKRPTMRDI 629
                    + +K C+  + + R T   +
Sbjct: 238 PSRWSSNFKDFLKKCLEKNVDARWTTSQL 266

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (309), Expect = 5e-32
 Identities = 52/273 (19%), Positives = 91/273 (33%), Gaps = 35/273 (12%)

Query: 372 EDFS--NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV 428
           ED+     +G    G V           +AV  V +  A D P+      +K+I     +
Sbjct: 5   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPE----NIKKEICINKML 60

Query: 429 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCL 488
           NH+N V   G   E       +  EY   G LF+ I       +      R    +   +
Sbjct: 61  NHENVVKFYGHRREGNIQ--YLFLEYCSGGELFDRIE--PDIGMPEPDAQRFFHQLMAGV 116

Query: 489 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKK---------- 538
            ++H +   I H  +    + L E    K+SD                 K          
Sbjct: 117 VYLHGIG--ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAP 174

Query: 539 --LSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT 596
             L      +   +V++ G++L  M+ G LP+   + S ++++          ++     
Sbjct: 175 ELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYS------DWKEKKTYLNP 228

Query: 597 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
               D   L     L+   +  +P  R T+ DI
Sbjct: 229 WKKIDSAPLA----LLHKILVENPSARITIPDI 257

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (312), Expect = 5e-32
 Identities = 37/264 (14%), Positives = 92/264 (34%), Gaps = 31/264 (11%)

Query: 377 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 435
            +G    G V++    S+        V V          +V  +K+I  L+   H+N ++
Sbjct: 12  DLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTD------QVLVKKEISILNIARHRNILH 65

Query: 436 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLN 495
           L    E  E    +M+FE+     +FE I+   +  L+    +     +   L+ +H  N
Sbjct: 66  LHESFESMEEL--VMIFEFISGLDIFERIN-TSAFELNEREIVSYVHQVCEALQFLHSHN 122

Query: 496 PPIAHNYLNSSAVHLT--EDYAAKLSDLSFWNEIAMAEMAATSK--------KLSSAPSA 545
             I H  +    +          K+ +     ++   +              ++      
Sbjct: 123 --IGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVV 180

Query: 546 SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL 605
           S  +++++ G L++ +++G  P+L +    +    + ++      +     +S       
Sbjct: 181 STATDMWSLGTLVYVLLSGINPFLAETN--QQIIENIMNAEYTFDEEAFKEIS------- 231

Query: 606 ETLGELIKSCVRADPEKRPTMRDI 629
               + +   +  + + R T  + 
Sbjct: 232 IEAMDFVDRLLVKERKSRMTASEA 255

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (310), Expect = 6e-32
 Identities = 52/301 (17%), Positives = 112/301 (37%), Gaps = 51/301 (16%)

Query: 362 LKRSELEAACEDFSNVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWPKNLE 415
           + R ++       S  +G    G VY+G             +A+ +V+    +       
Sbjct: 17  VAREKIT-----MSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN----EAASMRER 67

Query: 416 VQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH--------IK 467
           ++F  +   + + N  + V L+G   + +P   +++ E    G L  ++           
Sbjct: 68  IEFLNEASVMKEFNCHHVVRLLGVVSQGQP--TLVIMELMTRGDLKSYLRSLRPAMANNP 125

Query: 468 ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI 527
                     +++A  +A  + +++       H  L +    + ED+  K+ D     +I
Sbjct: 126 VLAPPSLSKMIQMAGEIADGMAYLNA--NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDI 183

Query: 528 AMAEMAATSKKLSSAP-----------SASLESNVYNFGVLLFEMVTG-RLPYLVDNGSL 575
              +      K                  +  S+V++FGV+L+E+ T    PY       
Sbjct: 184 YETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPY------- 236

Query: 576 EDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE 635
                  LS  Q L+  ++  L    +   + L EL++ C + +P+ RP+  +I + ++E
Sbjct: 237 -----QGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKE 291

Query: 636 I 636
            
Sbjct: 292 E 292

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score =  124 bits (312), Expect = 9e-32
 Identities = 41/264 (15%), Positives = 97/264 (36%), Gaps = 30/264 (11%)

Query: 377 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 435
            +GS   G V++    + G       ++     D     +   + +I  +++++H   +N
Sbjct: 36  ELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLD-----KYTVKNEISIMNQLHHPKLIN 90

Query: 436 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLN 495
           L    E++     +++ E+   G LF+ I   E   +     +         L+HMH+ +
Sbjct: 91  LHDAFEDKYEM--VLILEFLSGGELFDRIA-AEDYKMSEAEVINYMRQACEGLKHMHEHS 147

Query: 496 PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLE------- 548
             I H  +    +      A+ +  + F     +          ++A  A+ E       
Sbjct: 148 --IVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPV 205

Query: 549 ---SNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL 605
              ++++  GVL + +++G  P+        +   +         +    ++S       
Sbjct: 206 GFYTDMWAIGVLGYVLLSGLSPF--AGEDDLETLQNVKRCDWEFDEDAFSSVS------- 256

Query: 606 ETLGELIKSCVRADPEKRPTMRDI 629
               + IK+ ++ +P KR T+ D 
Sbjct: 257 PEAKDFIKNLLQKEPRKRLTVHDA 280

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score =  124 bits (311), Expect = 1e-31
 Identities = 54/268 (20%), Positives = 99/268 (36%), Gaps = 30/268 (11%)

Query: 373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 431
           D    +G+   G V++ T  + G   A   V      D     +   RK+I T+S + H 
Sbjct: 29  DIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESD-----KETVRKEIQTMSVLRHP 83

Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM 491
             VNL    E++     +M++E+   G LFE +   E   +     +     +   L HM
Sbjct: 84  TLVNLHDAFEDDNEM--VMIYEFMSGGELFEKVA-DEHNKMSEDEAVEYMRQVCKGLCHM 140

Query: 492 HQLNPPIAHNYLNSSAVHLT--EDYAAKLSDLSFWNEIAMAEMAATSKKLSS--AP---- 543
           H+ N    H  L    +  T       KL D      +   +    +   +   AP    
Sbjct: 141 HENN--YVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAE 198

Query: 544 --SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD 601
                  +++++ GVL + +++G  P+  +N   ++   +  S    +       +S   
Sbjct: 199 GKPVGYYTDMWSVGVLSYILLSGLSPFGGEND--DETLRNVKSCDWNMDDSAFSGIS--- 253

Query: 602 EEQLETLGELIKSCVRADPEKRPTMRDI 629
               E   + I+  + ADP  R T+   
Sbjct: 254 ----EDGKDFIRKLLLADPNTRMTIHQA 277

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  120 bits (302), Expect = 8e-31
 Identities = 45/267 (16%), Positives = 88/267 (32%), Gaps = 27/267 (10%)

Query: 373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 431
           DF +V+G+     V           +A+  ++    K   +  E     +I  L K+ H 
Sbjct: 12  DFRDVLGTGAFSEVILAEDKRTQKLVAIKCIA----KKALEGKEGSMENEIAVLHKIKHP 67

Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM 491
           N V L    E        ++ +    G LF+   I E          R+   +   ++++
Sbjct: 68  NIVALDDIYESGGHL--YLIMQLVSGGELFD--RIVEKGFYTERDASRLIFQVLDAVKYL 123

Query: 492 HQLN-PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAAT--------SKKLSSA 542
           H L          N     L ED    +SD           + +T        + ++ + 
Sbjct: 124 HDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQ 183

Query: 543 PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE 602
              S   + ++ GV+ + ++ G  P+   + +        L             +S    
Sbjct: 184 KPYSKAVDCWSIGVIAYILLCGYPPF--YDENDAKLFEQILKAEYEFDSPYWDDIS---- 237

Query: 603 EQLETLGELIKSCVRADPEKRPTMRDI 629
              ++  + I+  +  DPEKR T    
Sbjct: 238 ---DSAKDFIRHLMEKDPEKRFTCEQA 261

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 9e-31
 Identities = 41/280 (14%), Positives = 98/280 (35%), Gaps = 33/280 (11%)

Query: 372 EDFS--NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV 428
            +F    V+GS   GTVYKG  +  G ++ +        +        +   +   ++ V
Sbjct: 9   TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 68

Query: 429 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCL 488
           ++ +   L+G C         ++ +  P G L ++   +  +++     L   + +A  +
Sbjct: 69  DNPHVCRLLGICLTSTVQ---LITQLMPFGCLLDY-VREHKDNIGSQYLLNWCVQIAKGM 124

Query: 489 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAP----- 543
            ++      + H  L +  V +      K++D      +   E    ++           
Sbjct: 125 NYLEDRR--LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMAL 182

Query: 544 ------SASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT 596
                   + +S+V+++GV ++E++T G  PY            D +   +         
Sbjct: 183 ESILHRIYTHQSDVWSYGVTVWELMTFGSKPY------------DGIPASEISSILEKGE 230

Query: 597 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI 636
                      +  ++  C   D + RP  R++     ++
Sbjct: 231 RLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKM 270

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (296), Expect = 4e-30
 Identities = 59/314 (18%), Positives = 109/314 (34%), Gaps = 60/314 (19%)

Query: 362 LKRSELEAACEDFSNVIGSSPIGTVYKGTL--------SNGVEIAVASVSVASAKDWPKN 413
           L R  L          +G    G V             +   ++AV  +      D  + 
Sbjct: 10  LPRDRLV-----LGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLK----SDATEK 60

Query: 414 LEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIK----- 467
                  +++ +  +  HKN +NL+G C ++ P    ++ EYA  G L E++  +     
Sbjct: 61  DLSDLISEMEMMKMIGKHKNIINLLGACTQDGPL--YVIVEYASKGNLREYLQARRPPGL 118

Query: 468 ---------ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKL 518
                      E L     +  A  +A  +E++        H  L +  V +TED   K+
Sbjct: 119 EYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS--KKCIHRDLAARNVLVTEDNVMKI 176

Query: 519 SDLSFWNEIAMAEMAATSKKLSSAP-----------SASLESNVYNFGVLLFEMVT-GRL 566
           +D     +I   +    +                    + +S+V++FGVLL+E+ T G  
Sbjct: 177 ADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGS 236

Query: 567 PYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTM 626
           PY              +   +  +   +             L  +++ C  A P +RPT 
Sbjct: 237 PY------------PGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTF 284

Query: 627 RDIAAILREITGIT 640
           + +   L  I  +T
Sbjct: 285 KQLVEDLDRIVALT 298

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  117 bits (294), Expect = 6e-30
 Identities = 53/276 (19%), Positives = 104/276 (37%), Gaps = 31/276 (11%)

Query: 377 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 435
           ++G   +  V+    L    ++AV  +    A+D   +  ++FR++    + +NH   V 
Sbjct: 14  ILGFGGMSEVHLARDLRLHRDVAVKVLRADLARD--PSFYLRFRREAQNAAALNHPAIVA 71

Query: 436 LIGFCEEEEPFTR--MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ 493
           +    E E P      +V EY    TL + +H      +     + +       L   HQ
Sbjct: 72  VYDTGEAETPAGPLPYIVMEYVDGVTLRDIVH--TEGPMTPKRAIEVIADACQALNFSHQ 129

Query: 494 LNPPIAHNYLNSSAVHLTEDYAAKLSD--LSFWNEIAMAEMAATSKKLSSAPSASLE--- 548
               I H  +  + + ++   A K+ D  ++     +   +  T+  + +A   S E   
Sbjct: 130 NG--IIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQAR 187

Query: 549 -------SNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD 601
                  S+VY+ G +L+E++TG  P+     S    A  ++             LS   
Sbjct: 188 GDSVDARSDVYSLGCVLYEVLTGEPPF--TGDSPVSVAYQHVREDPIPPSARHEGLS--- 242

Query: 602 EEQLETLGELIKSCVRADPEKRP-TMRDIAAILREI 636
                 L  ++   +  +PE R  T  ++ A L  +
Sbjct: 243 ----ADLDAVVLKALAKNPENRYQTAAEMRADLVRV 274

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (295), Expect = 1e-29
 Identities = 58/299 (19%), Positives = 106/299 (35%), Gaps = 55/299 (18%)

Query: 373 DFSNVIGSSPIGTVYKGTLSN----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV 428
           +F  V+GS   G V   T       GV I VA V +   K      E     ++  ++++
Sbjct: 40  EFGKVLGSGAFGKVMNATAYGISKTGVSIQVA-VKMLKEKADSSERE-ALMSELKMMTQL 97

Query: 429 -NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIK-------------------- 467
            +H+N VNL+G C    P    ++FEY   G L  ++  K                    
Sbjct: 98  GSHENIVNLLGACTLSGPI--YLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEE 155

Query: 468 -ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE 526
            +   L +   L  A  +A  +E +        H  L +  V +T     K+ D     +
Sbjct: 156 EDLNVLTFEDLLCFAYQVAKGMEFLEF--KSCVHRDLAARNVLVTHGKVVKICDFGLARD 213

Query: 527 IAMAEMAATSKKLSSAP-----------SASLESNVYNFGVLLFEMVT-GRLPYLVDNGS 574
           I                             +++S+V+++G+LL+E+ + G  PY      
Sbjct: 214 IMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPY--PGIP 271

Query: 575 LEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAIL 633
           ++      +     +                E +  +++SC   D  KRP+  ++ + L
Sbjct: 272 VDANFYKLIQNGFKMD---------QPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFL 321

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (285), Expect = 1e-28
 Identities = 50/272 (18%), Positives = 96/272 (35%), Gaps = 35/272 (12%)

Query: 372 EDFS--NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV 428
           EDF    ++G     TV     L+   E A+  +         +N      ++ D +S++
Sbjct: 8   EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIK--ENKVPYVTRERDVMSRL 65

Query: 429 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCL 488
           +H  FV L    +++E         YA NG L ++I   +    D          +   L
Sbjct: 66  DHPFFVKLYFTFQDDEKL--YFGLSYAKNGELLKYIR--KIGSFDETCTRFYTAEIVSAL 121

Query: 489 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAP----- 543
           E++H     I H  L    + L ED   +++D      ++     A +            
Sbjct: 122 EYLHG--KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSP 179

Query: 544 ------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL 597
                 SA   S+++  G +++++V G  P+   N                 Q+ +    
Sbjct: 180 ELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGN------------EYLIFQKIIKLEY 227

Query: 598 SSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
             F E+      +L++  +  D  KR    ++
Sbjct: 228 -DFPEKFFPKARDLVEKLLVLDATKRLGCEEM 258

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (279), Expect = 9e-28
 Identities = 42/281 (14%), Positives = 86/281 (30%), Gaps = 30/281 (10%)

Query: 376 NVIGSSPIGTVYKGT--LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF 433
             IG    G V+K     + G  +A+  V V + ++      ++    +  L    H N 
Sbjct: 13  AEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNV 72

Query: 434 VNLIGFCEEEEPFTR---MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEH 490
           V L   C            +VFE+        ++       +       +   +   L+ 
Sbjct: 73  VRLFDVCTVSRTDRETKLTLVFEHVDQDLT-TYLDKVPEPGVPTETIKDMMFQLLRGLDF 131

Query: 491 MHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAAT--------SKKLSSA 542
           +H     + H  L    + +T     KL+D       +      +        + ++   
Sbjct: 132 LHSHR--VVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQ 189

Query: 543 PSASLESNVYNFGVLLFEMVTGRLPYLVDN--------------GSLEDWAADYLSGVQP 588
            S +   ++++ G +  EM   +  +   +                 EDW  D     Q 
Sbjct: 190 SSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQA 249

Query: 589 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
                   +  F  +  E   +L+  C+  +P KR +    
Sbjct: 250 FHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSA 290

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (278), Expect = 2e-27
 Identities = 44/274 (16%), Positives = 99/274 (36%), Gaps = 44/274 (16%)

Query: 377 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFV 434
           V+G    G V +        + A+  +              + R++++   +     + V
Sbjct: 19  VLGLGINGKVLQIFNKRTQEKFALKMLQDCP----------KARREVELHWRASQCPHIV 68

Query: 435 NLIGFCEEEEPFTR--MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMH 492
            ++   E      +  ++V E    G LF  I  +  +         I   +   ++++H
Sbjct: 69  RIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH 128

Query: 493 QLNPPIAHNYLNSSAVHLT---EDYAAKLSDLSFWNEIA--------------MAEMAAT 535
            +N  IAH  +    +  T    +   KL+D  F  E                +A     
Sbjct: 129 SIN--IAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLG 186

Query: 536 SKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP 595
            +K   +       ++++ GV+++ ++ G  P+  ++G L               +F +P
Sbjct: 187 PEKYDKS------CDMWSLGVIMYILLCGYPPFYSNHG-LAISPGMKTRIRMGQYEFPNP 239

Query: 596 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
             S   EE    +  LI++ ++ +P +R T+ + 
Sbjct: 240 EWSEVSEE----VKMLIRNLLKTEPTQRMTITEF 269

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 3e-27
 Identities = 46/280 (16%), Positives = 90/280 (32%), Gaps = 32/280 (11%)

Query: 376 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV 434
           + +G     TVYK    +    +A+  + +    +    +     ++I  L +++H N +
Sbjct: 4   DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNII 63

Query: 435 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL 494
            L+     +      +VF++         I    S  L         +     LE++HQ 
Sbjct: 64  GLLDAFGHKSNI--SLVFDFMETDLEV--IIKDNSLVLTPSHIKAYMLMTLQGLEYLHQ- 118

Query: 495 NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSA--------- 545
              I H  L  + + L E+   KL+D            A T + ++    A         
Sbjct: 119 -HWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARM 177

Query: 546 -SLESNVYNFGVLLFEMVTGRLPYLVDN--------------GSLEDWAADY-LSGVQPL 589
             +  +++  G +L E++        D+               + E W     L      
Sbjct: 178 YGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTF 237

Query: 590 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
           + F    L        + L +LI+     +P  R T    
Sbjct: 238 KSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQA 277

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 1e-26
 Identities = 49/290 (16%), Positives = 94/290 (32%), Gaps = 45/290 (15%)

Query: 373 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 431
             + VIG+   G VY+  L  +G  +A+  V            +    +++  + K++H 
Sbjct: 23  TDTKVIGNGSFGVVYQAKLCDSGELVAIKKV---------LQDKRFKNRELQIMRKLDHC 73

Query: 432 NFVNLIGFC----EEEEPFTRMMVFEYAPNGTLFEHIH-IKESEHLDWGMRLRIAMGMAY 486
           N V L  F     E+++     +V +Y P        H  +  + L           +  
Sbjct: 74  NIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFR 133

Query: 487 CLEHMHQLNPPIAHNYLNSSAVHLTED-YAAKLSDLSFWNEIAMAEMAAT---------S 536
            L ++H     I H  +    + L  D    KL D     ++   E   +          
Sbjct: 134 SLAYIHSFG--ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAP 191

Query: 537 KKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG-----------------SLEDWA 579
           + +  A   +   +V++ G +L E++ G+  +  D+G                  + +  
Sbjct: 192 ELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMN 251

Query: 580 ADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
            +Y     P Q    P    F          L    +   P  R T  + 
Sbjct: 252 PNYTEFKFP-QIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEA 300

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (269), Expect = 2e-26
 Identities = 48/267 (17%), Positives = 96/267 (35%), Gaps = 29/267 (10%)

Query: 377 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQ-FRKKIDTLSKVNHKNFV 434
            +GS     V K    S G++ A   +     K   + +  +   +++  L ++ H N +
Sbjct: 17  ELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVI 76

Query: 435 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL 494
            L    E +     +++ E    G LF+ +   E E L           +   + ++H  
Sbjct: 77  TLHEVYENKTDV--ILILELVAGGELFDFLA--EKESLTEEEATEFLKQILNGVYYLHS- 131

Query: 495 NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLS------SAP----- 543
              IAH  L    + L +    K         +A         K         AP     
Sbjct: 132 -LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNY 190

Query: 544 -SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE 602
               LE+++++ GV+ + +++G  P+L D    ++  A+  +     +       S    
Sbjct: 191 EPLGLEADMWSIGVITYILLSGASPFLGDT--KQETLANVSAVNYEFEDEYFSNTS---- 244

Query: 603 EQLETLGELIKSCVRADPEKRPTMRDI 629
                  + I+  +  DP+KR T++D 
Sbjct: 245 ---ALAKDFIRRLLVKDPKKRMTIQDS 268

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (270), Expect = 2e-26
 Identities = 46/269 (17%), Positives = 89/269 (33%), Gaps = 32/269 (11%)

Query: 372 EDFS--NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV 428
           EDF    ++G    G V+           A+ ++          ++E    +K       
Sbjct: 2   EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLM-DDDVECTMVEKRVLSLAW 60

Query: 429 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCL 488
            H    ++    + +E    +M  EY   G L  HI        D       A  +   L
Sbjct: 61  EHPFLTHMFCTFQTKENLFFVM--EYLNGGDLMYHIQ--SCHKFDLSRATFYAAEIILGL 116

Query: 489 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSA--- 545
           + +H     I +  L    + L +D   K++D     E  + +    +   +    A   
Sbjct: 117 QFLHSKG--IVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEI 174

Query: 546 ------SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS 599
                 +   + ++FGVLL+EM+ G+ P+       E+             ++++     
Sbjct: 175 LLGQKYNHSVDWWSFGVLLYEMLIGQSPF--HGQDEEELFHSIRMDNPFYPRWLEKEAK- 231

Query: 600 FDEEQLETLGELIKSCVRADPEKRPTMRD 628
                     +L+      +PEKR  +R 
Sbjct: 232 ----------DLLVKLFVREPEKRLGVRG 250

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  108 bits (270), Expect = 4e-26
 Identities = 47/274 (17%), Positives = 89/274 (32%), Gaps = 32/274 (11%)

Query: 372 EDFS--NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKK---IDTL 425
            DFS   +IG    G VY       G   A+  +     K   K  E     +   +  +
Sbjct: 4   NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKM--KQGETLALNERIMLSLV 61

Query: 426 SKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMA 485
           S  +    V +       +      + +    G L  H+   +            A  + 
Sbjct: 62  STGDCPFIVCMSYAFHTPDKL--SFILDLMNGGDLHYHLS--QHGVFSEADMRFYAAEII 117

Query: 486 YCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKK------- 538
             LEHMH     + +  L  + + L E    ++SDL    + +  +  A+          
Sbjct: 118 LGLEHMHNRF--VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPE 175

Query: 539 -LSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL 597
            L    +    ++ ++ G +LF+++ G  P+       +D        +    +  D   
Sbjct: 176 VLQKGVAYDSSADWFSLGCMLFKLLRGHSPF--RQHKTKDKHEIDRMTLTMAVELPD--- 230

Query: 598 SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA 631
            SF  E    L  L++  ++ D  +R       A
Sbjct: 231 -SFSPE----LRSLLEGLLQRDVNRRLGCLGRGA 259

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score =  105 bits (263), Expect = 7e-26
 Identities = 40/280 (14%), Positives = 88/280 (31%), Gaps = 35/280 (12%)

Query: 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 435
             IG    G VYK   + G   A+  + +    +    +     ++I  L ++ H N V 
Sbjct: 8   EKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDE---GIPSTTIREISILKELKHSNIVK 64

Query: 436 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLN 495
           L            ++VFE+         +       L+        + +   + + H   
Sbjct: 65  LYDVI--HTKKRLVLVFEHLDQDLK--KLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRR 120

Query: 496 PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSK----------KLSSAPSA 545
             + H  L    + +  +   K++D        +     T +           L  +   
Sbjct: 121 --VLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKY 178

Query: 546 SLESNVYNFGVLLFEMVTGRLPYLVDN--------------GSLEDWA--ADYLSGVQPL 589
           S   ++++ G +  EMV G   +   +               + ++W    +        
Sbjct: 179 STTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNF 238

Query: 590 QQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
             +      SF +   E+  +L+   ++ DP +R T +  
Sbjct: 239 TVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQA 278

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (263), Expect = 8e-26
 Identities = 42/306 (13%), Positives = 92/306 (30%), Gaps = 52/306 (16%)

Query: 362 LKRSELEAACEDFSNVIGSSPIGTVYKGT------LSNGVEIAVASVSVASAKDWPKNLE 415
             R  L+         +G    G V +         +    +AV  +     +    +  
Sbjct: 10  FPRDRLK-----LGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLK----EGATHSEH 60

Query: 416 VQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESE----- 470
                ++  L  + H   V  +     +     M++ E+   G L  ++  K +E     
Sbjct: 61  RALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYK 120

Query: 471 ---------HLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDL 521
                     L     +  +  +A  +E +        H  L +  + L+E    K+ D 
Sbjct: 121 VAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK--CIHRDLAARNILLSEKNVVKICDF 178

Query: 522 SFWNEIAMAEMAATSKKLSSAP-----------SASLESNVYNFGVLLFEMVTGRLPYLV 570
               +I                             +++S+V++FGVLL+E+ +       
Sbjct: 179 GLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP 238

Query: 571 DNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIA 630
                E++      G +              +     + + +  C   +P +RPT  ++ 
Sbjct: 239 GVKIDEEFCRRLKEGTRM----------RAPDYTTPEMYQTMLDCWHGEPSQRPTFSELV 288

Query: 631 AILREI 636
             L  +
Sbjct: 289 EHLGNL 294

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 1e-25
 Identities = 51/301 (16%), Positives = 95/301 (31%), Gaps = 39/301 (12%)

Query: 372 EDFS--NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV 428
           E+F     IG    G VYK      G  +A+  + + +  +    +     ++I  L ++
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE---GVPSTAIREISLLKEL 58

Query: 429 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCL 488
           NH N V L+     E      +VFE+  +  L + +       +   +       +   L
Sbjct: 59  NHPNIVKLLDVIHTENKL--YLVFEF-LHQDLKKFMDASALTGIPLPLIKSYLFQLLQGL 115

Query: 489 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKK---------- 538
              H     + H  L    + +  + A KL+D        +     T +           
Sbjct: 116 AFCHS--HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEI 173

Query: 539 LSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDN--------------GSLEDWAADY-- 582
           L      S   ++++ G +  EMVT R  +  D+                   W      
Sbjct: 174 LLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSM 233

Query: 583 LSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA--ILREITGIT 640
                   ++     S       E    L+   +  DP KR + +   A    +++T   
Sbjct: 234 PDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPV 293

Query: 641 P 641
           P
Sbjct: 294 P 294

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 3e-25
 Identities = 38/288 (13%), Positives = 87/288 (30%), Gaps = 43/288 (14%)

Query: 376 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV 434
           + IG    G V       N V +A+  +S    + + +    +  ++I  L +  H+N +
Sbjct: 14  SYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQ----RTLREIKILLRFRHENII 69

Query: 435 NLIGFCEEEEPFTRMMVF--EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMH 492
            +              V+   +     L++ +    ++HL           +   L+++H
Sbjct: 70  GINDIIRAPTIEQMKDVYLVTHLMGADLYKLLK---TQHLSNDHICYFLYQILRGLKYIH 126

Query: 493 QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKK-------------L 539
             N  + H  L  S + L      K+ D                               +
Sbjct: 127 SAN--VLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIM 184

Query: 540 SSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNG--------------SLEDWAADYL-- 583
            ++   +   ++++ G +L EM++ R  +   +               S ED        
Sbjct: 185 LNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLK 244

Query: 584 --SGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
             + +  L        +           +L+   +  +P KR  +   
Sbjct: 245 ARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQA 292

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  104 bits (259), Expect = 5e-25
 Identities = 42/269 (15%), Positives = 87/269 (32%), Gaps = 30/269 (11%)

Query: 372 EDFS--NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV 428
           +DF     +G+   G V+      NG   A+  +                  +   LS V
Sbjct: 4   QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVR--LKQVEHTNDERLMLSIV 61

Query: 429 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCL 488
            H   + + G  ++ +     M+ +Y   G LF  +     +     +    A  +   L
Sbjct: 62  THPFIIRMWGTFQDAQQI--FMIMDYIEGGELFSLLRKS--QRFPNPVAKFYAAEVCLAL 117

Query: 489 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAP----- 543
           E++H     I +  L    + L ++   K++D  F   +              AP     
Sbjct: 118 EYLHS--KDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVST 175

Query: 544 -SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE 602
              +   + ++FG+L++EM+ G  P+   + +        L+       F +  +     
Sbjct: 176 KPYNKSIDWWSFGILIYEMLAGYTPF--YDSNTMKTYEKILNAELRFPPFFNEDVK---- 229

Query: 603 EQLETLGELIKSCVRADPEKRPTMRDIAA 631
                  +L+   +  D  +R        
Sbjct: 230 -------DLLSRLITRDLSQRLGNLQNGT 251

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 1e-24
 Identities = 48/266 (18%), Positives = 94/266 (35%), Gaps = 37/266 (13%)

Query: 377 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPK-NLEVQFRKKIDTLSKVN--HKN 432
           ++GS   G+VY G  +S+ + +A+  V      DW +     +   ++  L KV+     
Sbjct: 11  LLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSG 70

Query: 433 FVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMH 492
            + L+ + E  + F  +++ E            I E   L   +       +   + H H
Sbjct: 71  VIRLLDWFERPDSF--VLILERPEPVQDLFD-FITERGALQEELARSFFWQVLEAVRHCH 127

Query: 493 QLNPPIAHNYLNSSAVHLTED-YAAKLSDL---SFWNEIAMAEMAATS-----KKLSSAP 543
                + H  +    + +  +    KL D    +   +    +   T      + +    
Sbjct: 128 NCG--VLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHR 185

Query: 544 SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE 603
                + V++ G+LL++MV G +P+  D   +              Q F    +S     
Sbjct: 186 YHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRG------------QVFFRQRVS----- 228

Query: 604 QLETLGELIKSCVRADPEKRPTMRDI 629
                  LI+ C+   P  RPT  +I
Sbjct: 229 --SECQHLIRWCLALRPSDRPTFEEI 252

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  101 bits (253), Expect = 2e-24
 Identities = 42/292 (14%), Positives = 79/292 (27%), Gaps = 40/292 (13%)

Query: 377 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 435
            IGS   G +Y GT ++ G E+A+    V +          Q   +      +     + 
Sbjct: 14  KIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHP-------QLHIESKIYKMMQGGVGIP 66

Query: 436 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLN 495
            I +C  E  +  +MV E          +    S        L +A  M   +E++H  N
Sbjct: 67  TIRWCGAEGDY-NVMVMELLGPSLED--LFNFCSRKFSLKTVLLLADQMISRIEYIHSKN 123

Query: 496 PPIAHNYL---NSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSS----------A 542
               H  +   N       +     + D     +   A          +          +
Sbjct: 124 --FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYAS 181

Query: 543 P------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT 596
                    S   ++ + G +L     G LP+             Y    +         
Sbjct: 182 INTHLGIEQSRRDDLESLGYVLMYFNLGSLPW--QGLKAATKRQKYERISEKKMSTPIEV 239

Query: 597 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI---TGITPDGAI 645
           L      +       +  C     + +P    +  + R +    G + D   
Sbjct: 240 LCKGYPSEFA---TYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVF 288

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (250), Expect = 6e-24
 Identities = 48/296 (16%), Positives = 99/296 (33%), Gaps = 51/296 (17%)

Query: 376 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV 434
             IG    G V+K      G ++A+  V + + K+      +   ++I  L  + H+N V
Sbjct: 16  AKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKE---GFPITALREIKILQLLKHENVV 72

Query: 435 NLIGFCEEEEPFTRM------MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCL 488
           NLI  C  +            +VF++  +       ++     L      R+   +   L
Sbjct: 73  NLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSE--IKRVMQMLLNGL 130

Query: 489 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKK---------- 538
            ++H+    I H  + ++ V +T D   KL+D       ++A+ +  ++           
Sbjct: 131 YYIHRNK--ILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYR 188

Query: 539 ----LSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 594
               L          +++  G ++ EM T          + +   A        +   V 
Sbjct: 189 PPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIM--QGNTEQHQLALISQLCGSITPEVW 246

Query: 595 PTLSSFDEEQLETLG---------------------ELIKSCVRADPEKRPTMRDI 629
           P + +++  +   L                      +LI   +  DP +R    D 
Sbjct: 247 PNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDA 302

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (250), Expect = 1e-23
 Identities = 40/283 (14%), Positives = 87/283 (30%), Gaps = 39/283 (13%)

Query: 377 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 435
            +GS   G V        G ++A+  +      +       +  +++  L  + H+N + 
Sbjct: 25  PVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSE---LFAKRAYRELRLLKHMRHENVIG 81

Query: 436 LIGFCEEEEPFTR----MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM 491
           L+     +E         +V  +           + + E L       +   M   L ++
Sbjct: 82  LLDVFTPDETLDDFTDFYLVMPFMGTDLG----KLMKHEKLGEDRIQFLVYQMLKGLRYI 137

Query: 492 HQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLE--- 548
           H       H  L    + + ED   K+ D     +           +   AP   L    
Sbjct: 138 HAAGII--HRDLKPGNLAVNEDCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMR 195

Query: 549 ----SNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP---------------- 588
                ++++ G ++ EM+TG+  +   +   +      ++G  P                
Sbjct: 196 YTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYM 255

Query: 589 --LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
             L +      +S           L++  +  D E+R T  + 
Sbjct: 256 KGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEA 298

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.1 bits (238), Expect = 3e-22
 Identities = 55/281 (19%), Positives = 93/281 (33%), Gaps = 39/281 (13%)

Query: 372 EDFS--NVIGSSPIGTVYKGTL----SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTL 425
           E+F    V+G+   G V+          G   A+  +  A+     K  E   R +   L
Sbjct: 24  ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTE-HTRTERQVL 82

Query: 426 SKVNHKNF-VNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGM 484
             +    F V L    + E     ++  +Y   G LF H+   + E             +
Sbjct: 83  EHIRQSPFLVTLHYAFQTETKLHLIL--DYINGGELFTHLS--QRERFTEHEVQIYVGEI 138

Query: 485 AYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA------------MAEM 532
              LEH+H+L   I +  +    + L  +    L+D     E                E 
Sbjct: 139 VLALEHLHKLG--IIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEY 196

Query: 533 AATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDN--GSLEDWAADYLSGVQPLQ 590
            A               + ++ GVL++E++TG  P+ VD    S  + +   L    P  
Sbjct: 197 MAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYP 256

Query: 591 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA 631
           Q +                +LI+  +  DP+KR       A
Sbjct: 257 QEMSALAK-----------DLIQRLLMKDPKKRLGCGPRDA 286

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 90.6 bits (224), Expect = 1e-20
 Identities = 31/292 (10%), Positives = 77/292 (26%), Gaps = 42/292 (14%)

Query: 377 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 435
            IG    G +++GT L N  ++A+      S          Q R +  T   +     + 
Sbjct: 12  RIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAP-------QLRDEYRTYKLLAGCTGIP 64

Query: 436 LIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLN 495
            + +  +E     ++V +    G   E +                A  M   ++ +H+ +
Sbjct: 65  NVYYFGQEGLH-NVLVIDLL--GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKS 121

Query: 496 PPIAHNYLNSSAVHLTEDYA-----AKLSD------LSFWNEIAMAEMAATSKKLSSAPS 544
             + +  +      +    +       + D                          +A  
Sbjct: 122 --LVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARY 179

Query: 545 ASLE----------SNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVD 594
            S+            ++   G +    + G LP+     +      + +      ++   
Sbjct: 180 MSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERI-----GEKKQS 234

Query: 595 PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI---TGITPDG 643
             L        E   + +        +  P    +  +  ++      T D 
Sbjct: 235 TPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNTTEDE 286

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.0 bits (225), Expect = 1e-20
 Identities = 43/269 (15%), Positives = 81/269 (30%), Gaps = 31/269 (11%)

Query: 373 DFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHK 431
           D+  ++G    G V      + G   A+  +         K+       +   L    H 
Sbjct: 8   DYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIA--KDEVAHTVTESRVLQNTRHP 65

Query: 432 NFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM 491
               L    +  +      V EYA  G LF H+                   +   LE++
Sbjct: 66  FLTALKYAFQTHDRL--CFVMEYANGGELFFHLS--RERVFTEERARFYGAEIVSALEYL 121

Query: 492 HQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAAT---------SKKLSSA 542
           H     + +  +    + L +D   K++D     E                  + ++   
Sbjct: 122 HS--RDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLED 179

Query: 543 PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE 602
                  + +  GV+++EM+ GRLP+   N   E      L       + + P       
Sbjct: 180 NDYGRAVDWWGLGVVMYEMMCGRLPF--YNQDHERLFELILMEEIRFPRTLSPEAK---- 233

Query: 603 EQLETLGELIKSCVRADPEKRPTMRDIAA 631
                   L+   ++ DP++R       A
Sbjct: 234 -------SLLAGLLKKDPKQRLGGGPSDA 255

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.2 bits (220), Expect = 3e-20
 Identities = 38/282 (13%), Positives = 83/282 (29%), Gaps = 37/282 (13%)

Query: 376 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFV 434
             IG    GTV+K         +A+  V +       + +     ++I  L ++ HKN V
Sbjct: 8   EKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDD---EGVPSSALREICLLKELKHKNIV 64

Query: 435 NLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL 494
            L      +      +VFE+                  +          +   L   H  
Sbjct: 65  RLHDVLHSD--KKLTLVFEFCDQDLKKYFDSCNGDLDPEI--VKSFLFQLLKGLGFCHSR 120

Query: 495 NPPIAHNYLNSSAVHLTEDYAAKLSDLSF----------WNEIAMAEMAATSKKLSSAPS 544
           N  + H  L    + +  +   KL++             ++   +         L  A  
Sbjct: 121 N--VLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKL 178

Query: 545 ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ 604
            S   ++++ G +  E+     P    N   +     +     P ++         D + 
Sbjct: 179 YSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKP 238

Query: 605 L-----------------ETLGELIKSCVRADPEKRPTMRDI 629
                              T  +L+++ ++ +P +R +  + 
Sbjct: 239 YPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEA 280

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 86.0 bits (212), Expect = 7e-19
 Identities = 39/297 (13%), Positives = 91/297 (30%), Gaps = 54/297 (18%)

Query: 372 EDFS--NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV 428
           +D+     +G      V++   ++N  ++ V        K      + + +++I  L  +
Sbjct: 35  DDYQLVRKLGRGKYSEVFEAINITNNEKVVV--------KILKPVKKKKIKREIKILENL 86

Query: 429 N-HKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYC 487
               N + L    ++    T  +VFE+  N    +         L           +   
Sbjct: 87  RGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQ-----TLTDYDIRFYMYEILKA 141

Query: 488 LEHMHQLNPPIAHNYLNSSAVHLTED----------YAAKLSDLSFWNEIAMAEMAATSK 537
           L++ H +   I H  +    V +  +           A        +N    +      +
Sbjct: 142 LDYCHSMG--IMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPE 199

Query: 538 KLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY-LSGVQPLQQFVDPT 596
            L          ++++ G +L  M+  + P+   + + +       + G + L  ++D  
Sbjct: 200 LLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKY 259

Query: 597 LSSFDEEQLETLG------------------------ELIKSCVRADPEKRPTMRDI 629
               D    + LG                        + +   +R D + R T R+ 
Sbjct: 260 NIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREA 316

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.0 bits (204), Expect = 8e-18
 Identities = 47/305 (15%), Positives = 99/305 (32%), Gaps = 43/305 (14%)

Query: 360 PKLKRSELEAACEDFSN------VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPK 412
           P   R EL     +          +GS   G+V        G+ +AV  +S         
Sbjct: 2   PTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSI--- 58

Query: 413 NLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP---FTRMMVFEYAPNGTLFEHIHIKES 469
               +  +++  L  + H+N + L+           F  + +  +     L    +I + 
Sbjct: 59  IHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLN---NIVKC 115

Query: 470 EHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM 529
           + L       +   +   L+++H  +  I H  L  S + + ED   K+ D         
Sbjct: 116 QKLTDDHVQFLIYQILRGLKYIHSAD--IIHRDLKPSNLAVNEDCELKILDFGLARHTDD 173

Query: 530 AEMAATSKKLSSAP-------SASLESNVYNFGVLLFEMVTGRLPYLVDN---------- 572
                 + +   AP         +   ++++ G ++ E++TGR  +   +          
Sbjct: 174 EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 233

Query: 573 --GSLEDWAADYLSG------VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRP 624
             G+        +S       +Q L Q      ++          +L++  +  D +KR 
Sbjct: 234 LVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRI 293

Query: 625 TMRDI 629
           T    
Sbjct: 294 TAAQA 298

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.2 bits (202), Expect = 2e-17
 Identities = 43/269 (15%), Positives = 84/269 (31%), Gaps = 30/269 (11%)

Query: 372 EDFS--NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV 428
           + F     +G+   G V       +G   A+  +         K +E     +   L  V
Sbjct: 41  DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVK-LKQIE-HTLNEKRILQAV 98

Query: 429 NHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCL 488
           N    V L    ++       MV EY   G +F H+                A  +    
Sbjct: 99  NFPFLVKLEFSFKD--NSNLYMVMEYVAGGEMFSHLR--RIGRFSEPHARFYAAQIVLTF 154

Query: 489 EHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAP----- 543
           E++H L+  + +  L    + + +    +++D  F   +            + AP     
Sbjct: 155 EYLHSLD--LIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILS 212

Query: 544 -SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE 602
              +   + +  GVL++EM  G  P+  D                 + + +      F  
Sbjct: 213 KGYNKAVDWWALGVLIYEMAAGYPPFFADQ-------------PIQIYEKIVSGKVRFPS 259

Query: 603 EQLETLGELIKSCVRADPEKRPTMRDIAA 631
                L +L+++ ++ D  KR        
Sbjct: 260 HFSSDLKDLLRNLLQVDLTKRFGNLKNGV 288

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (188), Expect = 1e-15
 Identities = 44/295 (14%), Positives = 90/295 (30%), Gaps = 52/295 (17%)

Query: 377 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVN 435
            IGS   G V           +A+  +S             +  +++  +  VNHKN ++
Sbjct: 24  PIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQ---THAKRAYRELVLMKCVNHKNIIS 80

Query: 436 LIGFCEE----EEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHM 491
           L+         EE     +V E                  LD      +   M   ++H+
Sbjct: 81  LLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQM-----ELDHERMSYLLYQMLCGIKHL 135

Query: 492 HQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMA--------ATSKKLSSAP 543
           H     I H  L  S + +  D   K+ D         + M           + ++    
Sbjct: 136 HS--AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGM 193

Query: 544 SASLESNVYNFGVLLFEMVTGRLPYLVDN--------------------GSLEDWAADYL 583
                 ++++ G ++ EMV  ++ +   +                      L+    +Y+
Sbjct: 194 GYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYV 253

Query: 584 SG---------VQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDI 629
                       +     + P  S  ++ +     +L+   +  DP KR ++ D 
Sbjct: 254 ENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDA 308

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.2 bits (173), Expect = 8e-14
 Identities = 40/307 (13%), Positives = 94/307 (30%), Gaps = 55/307 (17%)

Query: 377 VIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKID-----TLSKVNH 430
            +G     TV+    + N   +A+  V            E++  ++++         +  
Sbjct: 20  KLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGA 79

Query: 431 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTL-FEHIHIKESEHLDWGMRLRIAMGMAYCLE 489
            + + L+     + P    +V  +   G      I   E   +      +I+  +   L+
Sbjct: 80  NHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLD 139

Query: 490 HMHQLNPPIAH------NYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAP 543
           +MH+    I H      N L             K++DL            +   +   +P
Sbjct: 140 YMHR-RCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSP 198

Query: 544 ------SASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL-------- 589
                      +++++   L+FE++TG   +  D G       D+++ +  L        
Sbjct: 199 EVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYL 258

Query: 590 ---------------------------QQFVDPTLSSFDEEQLETLGELIKSCVRADPEK 622
                                       + V      F +++ + + + +   ++ DP K
Sbjct: 259 LRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRK 318

Query: 623 RPTMRDI 629
           R     +
Sbjct: 319 RADAGGL 325

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 60.2 bits (145), Expect = 5e-11
 Identities = 22/157 (14%), Positives = 44/157 (28%), Gaps = 15/157 (9%)

Query: 376 NVIGSSPIGTVYKGTLSNGVEIAV-----ASVSVASAKDWPKNLEVQFRKKIDTLSKVNH 430
            ++G      V+        E  V        S    K+     ++ F       ++   
Sbjct: 6   KLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEF 65

Query: 431 KNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEH 490
           +    L G            V+ +  N  L E I  KE   +       +   +   +  
Sbjct: 66  RALQKLQGLAV-------PKVYAWEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAK 118

Query: 491 MHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI 527
            +     I H  L+   V ++ +    + D     E+
Sbjct: 119 FYH--RGIVHGDLSQYNVLVS-EEGIWIIDFPQSVEV 152

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.9 bits (149), Expect = 8e-11
 Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 6/110 (5%)

Query: 46  PYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILR 105
           P   LT+  + +   N         +   +  L L    +       + SLT ++ +   
Sbjct: 280 PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFA 337

Query: 106 NNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN 155
           NN  S         L  +  L  GHN  S   P  L     +T L L++ 
Sbjct: 338 NNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 3e-04
 Identities = 32/154 (20%), Positives = 49/154 (31%), Gaps = 26/154 (16%)

Query: 50  LTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSF 109
           LT+  S    NN  S          +  L+L    L+      + SLT++  + L NN  
Sbjct: 196 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQI 253

Query: 110 SGIIPEGFGELEELEVLDFGHNNFSGPLP--------------------NDLGINHSLTI 149
           S + P     L +L  L  G N  S   P                    + +    +LT 
Sbjct: 254 SNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY 311

Query: 150 LLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183
           L L  N+        +  L  L        ++S 
Sbjct: 312 LTLYFNNISD--ISPVSSLTKLQRLFFANNKVSD 343

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 4e-04
 Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 4/65 (6%)

Query: 74  KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
           + +   L    +  T++     L  + ++         I  +G   L  L  ++F +N  
Sbjct: 23  EKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQL 78

Query: 134 SGPLP 138
           +   P
Sbjct: 79  TDITP 83

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 97  THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNND 156
            ++  + LRNN   G +P+G  +L+ L  L+   NN  G +P   G      +    NN 
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302

Query: 157 F 157
            
Sbjct: 303 C 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.8 bits (125), Expect = 5e-08
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 53  WRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGI 112
            +    +N+     G       +  L+L++  + GTL   +  L  + S+ +  N+  G 
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 113 IPEGFGELEELEVLDFGHNNF--SGPLP 138
           IP+  G L+  +V  + +N      PLP
Sbjct: 284 IPQ-GGNLQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 50.5 bits (119), Expect = 3e-07
 Identities = 45/185 (24%), Positives = 75/185 (40%), Gaps = 16/185 (8%)

Query: 24  LCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPC--SWFGVECSD----GKVVN 77
           LC     +  ALL++++ +  +P   L+SW       + C  +W GV C       +V N
Sbjct: 2   LC--NPQDKQALLQIKKDL-GNP-TTLSSW---LPTTDCCNRTWLGVLCDTDTQTYRVNN 54

Query: 78  LNLKDLCLEG--TLAPEIQSLTHIKSIILRNN-SFSGIIPEGFGELEELEVLDFGHNNFS 134
           L+L  L L     +   + +L ++  + +    +  G IP    +L +L  L   H N S
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 135 GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYER 194
           G +P+ L    +L  L    N   G+L P I  L  L     D  ++S A       + +
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174

Query: 195 SIKWN 199
                
Sbjct: 175 LFTSM 179

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 127 DFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSES 174
           D  +N   G LP  L     L  L +  N+  G + P+   LQ    S
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVS 296

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.3 bits (116), Expect = 7e-07
 Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 13/95 (13%)

Query: 63  CSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEE 122
           C    V+CS     +L L+       +  ++        + L+NN  + I    F  L+ 
Sbjct: 10  CHLRVVQCS-----DLGLE------KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKN 56

Query: 123 LEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDF 157
           L  L   +N  S   P        L  L L  N  
Sbjct: 57  LHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 2/71 (2%)

Query: 113 IPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 172
           +P+      +  +LD  +N  +     D     +L  L+L NN            L  L 
Sbjct: 25  VPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 173 ESQVDEGQLSS 183
              + + QL  
Sbjct: 83  RLYLSKNQLKE 93

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 106 NNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDF 157
           NN+ + +       LE L+ L    N+    +P     +H L    L  N +
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 2e-04
 Identities = 12/96 (12%), Positives = 28/96 (29%), Gaps = 15/96 (15%)

Query: 77  NLNLKDLCLEGT------LAPEIQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVL 126
           +L+++ L ++         A  +  L   + + L +   +      I         L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 127 DFGHNNFSGPLPNDLG-----INHSLTILLLDNNDF 157
           +   N       + +       +  +  L L N   
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.001
 Identities = 12/75 (16%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 99  IKSIILRNNSFSGI-IPEGFGELEELEVLDFGHNNFSG----PLPNDLGINHSLTILLLD 153
           I+S+ ++    S     E    L++ +V+       +      + + L +N +L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 154 NNDFVGSLSPEIYKL 168
           +N+        + + 
Sbjct: 64  SNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 9/85 (10%)

Query: 94  QSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGP----LPNDLGINH 145
           Q  + ++ + L +   S      +         L  LD  +N         L   +    
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 146 S-LTILLLDNNDFVGSLSPEIYKLQ 169
             L  L+L +  +   +   +  L+
Sbjct: 426 CLLEQLVLYDIYWSEEMEDRLQALE 450

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 91  PEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTIL 150
             + +L+ + ++   +N  S I P     L  L  +   +N  S   P  L    +L I+
Sbjct: 167 TPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIV 222

Query: 151 LLDN 154
            L N
Sbjct: 223 TLTN 226

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	664
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.97
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.93
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.86
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.54
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.4
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.36
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.34
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.2
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.19
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.17
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.16
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.14
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.08
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.96
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.9
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.86
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.81
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.73
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.7
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.7
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.65
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.61
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.59
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.51
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.48
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.46
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.36
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.33
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.17
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.93
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	97.91
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.81
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.72
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.7
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.67
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.66
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.64
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.62
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.54
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.51
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	97.28
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.91
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.36
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	95.61
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.6
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	94.36
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	93.23
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	92.91

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-50  Score=406.01  Aligned_cols=250  Identities=24%  Similarity=0.421  Sum_probs=198.1

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.+.||+|+||.||+|++++  .||||+++.....   ....++|.+|+++|++++|||||+++|++.++   ..++|||
T Consensus        12 ~~~~lG~G~fg~Vy~~~~~~--~vAvK~~~~~~~~---~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~~---~~~lv~E   83 (276)
T d1uwha_          12 VGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPT---PQQLQAFKNEVGVLRKTRHVNILLFMGYSTAP---QLAIVTQ   83 (276)
T ss_dssp             CCSEEEECSSCEEEEEESSS--EEEEEECCCSSCC---TTHHHHHHHHHHHHTTCCCTTBCCEEEEECSS---SCEEEEE
T ss_pred             EEEEEeeCCCcEEEEEEECC--EEEEEEEEcccCC---HHHHHHHHHHHHHHHhCCCCCEeeeeEEEecc---EEEEEEe
Confidence            45889999999999998753  5999998654332   24567899999999999999999999998654   4589999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      ||++|+|.++++. ....++|..+++|+.|+|+||+|||+++  ||||||||+|||+|.++.+||+|||+++....    
T Consensus        84 y~~~g~L~~~l~~-~~~~~~~~~~~~i~~qi~~gl~yLH~~~--ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~~  160 (276)
T d1uwha_          84 WCEGSSLYHHLHI-IETKFEMIKLIDIARQTAQGMDYLHAKS--IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGS  160 (276)
T ss_dssp             CCCEEEHHHHHHT-SCCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEETTSSEEECCCCCSCC-------
T ss_pred             cCCCCCHHHHHhh-ccCCCCHHHHHHHHHHHHHHHHHHhcCC--EeccccCHHHEEEcCCCCEEEccccceeeccccCCc
Confidence            9999999999963 3456999999999999999999999998  99999999999999999999999999876532    


Q ss_pred             -------hhhhcccccccCC---CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 006019          530 -------AEMAATSKKLSSA---PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  599 (664)
Q Consensus       530 -------~~~~~~~pe~~~~---~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  599 (664)
                             .+..+.+||....   ..++.++|||||||++|||+||+.||...  ...+.+........     ..+....
T Consensus       161 ~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~--~~~~~~~~~~~~~~-----~~p~~~~  233 (276)
T d1uwha_         161 HQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNI--NNRDQIIFMVGRGY-----LSPDLSK  233 (276)
T ss_dssp             -----CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTC--CCHHHHHHHHHHTS-----CCCCGGG
T ss_pred             ccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCC--ChHHHHHHHHhcCC-----CCCcchh
Confidence                   1235667887643   35789999999999999999999999432  22222222222111     1122222


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCC
Q 006019          600 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITP  641 (664)
Q Consensus       600 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~  641 (664)
                      .+.+++.++.+++.+||+.||++||||+||++.|+.+.+..|
T Consensus       234 ~~~~~~~~l~~li~~cl~~dp~~RPt~~~il~~Le~l~~~~P  275 (276)
T d1uwha_         234 VRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLARSLP  275 (276)
T ss_dssp             SCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCC
T ss_pred             ccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHcCC
Confidence            334445679999999999999999999999999999987554

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.3e-49  Score=403.38  Aligned_cols=256  Identities=18%  Similarity=0.326  Sum_probs=198.9

Q ss_pred             CCHHHHHHHHhhh-----------hcccccCCCeEEEEEEECC-C---cEEEEEEeeecccCCCchhHHHHHHHHHHHHh
Q 006019          362 LKRSELEAACEDF-----------SNVIGSSPIGTVYKGTLSN-G---VEIAVASVSVASAKDWPKNLEVQFRKKIDTLS  426 (664)
Q Consensus       362 ~~~~el~~~~~~~-----------~~~iG~G~~G~Vy~g~~~~-~---~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~  426 (664)
                      ++++++.+++.+|           .+.||+|+||.||+|++.. +   ..||||.+....    .....++|.+|+++|+
T Consensus         7 ~t~~d~~~a~~~f~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~   82 (299)
T d1jpaa_           7 FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGY----TEKQRRDFLSEASIMG   82 (299)
T ss_dssp             GGSSSHHHHHHHHSCBCCGGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSC----CHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHhhhchhhChhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECccc----CHHHHHHHHHHHHHHH
Confidence            3445555665554           3689999999999999752 2   357777764322    2345578999999999


Q ss_pred             ccCCCcccceEEEEecCCCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCC
Q 006019          427 KVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSS  506 (664)
Q Consensus       427 ~l~H~niv~l~g~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~  506 (664)
                      +++|||||+++|+|.+.+  ..++|||||++|+|.++++. ....++|.++++|+.|||+||+|||+++  |+||||||+
T Consensus        83 ~l~HpnIv~l~g~~~~~~--~~~iv~Ey~~~g~L~~~~~~-~~~~l~~~~~~~i~~qia~gl~yLH~~~--iiHrDlKp~  157 (299)
T d1jpaa_          83 QFDHPNVIHLEGVVTKST--PVMIITEFMENGSLDSFLRQ-NDGQFTVIQLVGMLRGIAAGMKYLADMN--YVHRDLAAR  157 (299)
T ss_dssp             TCCCTTBCCEEEEECSSS--SCEEEEECCTTEEHHHHHHT-TTTCSCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGG
T ss_pred             hCCCCCCccEEEEEeeCC--EEEEEEEecCCCcceeeecc-ccCCCCHHHHHHHHHHHHHHHHHHhhCC--CccCccccc
Confidence            999999999999998877  56999999999999998863 3457999999999999999999999998  999999999


Q ss_pred             CeEecCCCceEecccCchhhhhhh--------------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCC
Q 006019          507 AVHLTEDYAAKLSDLSFWNEIAMA--------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVD  571 (664)
Q Consensus       507 NILld~~~~~kl~DfGla~~~~~~--------------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~  571 (664)
                      |||||.++.+||+|||+++.....              +..+.+||......++.++|||||||++|||+| |+.||.  
T Consensus       158 NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~--  235 (299)
T d1jpaa_         158 NILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYW--  235 (299)
T ss_dssp             GEEECTTCCEEECCC-----------------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTT--
T ss_pred             eEEECCCCcEEECCcccceEccCCCCcceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCC--
Confidence            999999999999999999865321              234567887777889999999999999999998 899994  


Q ss_pred             CCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          572 NGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      +....+.......+..          ...+.+++.++.+++.+||+.||++||||.||++.|++++.
T Consensus       236 ~~~~~~~~~~i~~~~~----------~~~~~~~~~~l~~li~~cl~~~P~~RPs~~ei~~~L~~~l~  292 (299)
T d1jpaa_         236 DMTNQDVINAIEQDYR----------LPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTLDKMIR  292 (299)
T ss_dssp             TCCHHHHHHHHHTTCC----------CCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCC----------CCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhc
Confidence            2333444433333211          11233445678999999999999999999999999999875

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-49  Score=397.11  Aligned_cols=242  Identities=22%  Similarity=0.370  Sum_probs=195.6

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +.+.||+|+||.||+|++.++..||||++.....      ..++|.+|++++++++|||||+++|+|.+.+  ..++|||
T Consensus         9 ~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~------~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~--~~~lv~E   80 (263)
T d1sm2a_           9 FVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM------SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQA--PICLVFE   80 (263)
T ss_dssp             EEEEEECCSSCCEEEEEETTTEEEEEEECCSSSS------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS--SCEEEEE
T ss_pred             EEEEEeeCCCeEEEEEEECCCCEEEEEEECCCcC------cHHHHHHHHHHHHhcCCCCcccccceeccCC--ceEEEEE
Confidence            4578999999999999999899999999864321      2467999999999999999999999998877  5699999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      |+++|+|.++++. ....++|..+.+|+.|+|.||+|||+++  |+||||||+|||+|+++.+||+|||+++.....   
T Consensus        81 ~~~~g~L~~~l~~-~~~~~~~~~~~~i~~qia~gl~~lH~~~--iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~  157 (263)
T d1sm2a_          81 FMEHGCLSDYLRT-QRGLFAAETLLGMCLDVCEGMAYLEEAC--VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYT  157 (263)
T ss_dssp             CCTTCBHHHHHHT-TTTCCCHHHHHHHHHHHHHHHHHHHHTT--CCCTTCSGGGEEECGGGCEEECSCC-----------
T ss_pred             ecCCCcHHHHhhc-cccCCCHHHHHHHHHHHHHHHHhhhccc--eeecccchhheeecCCCCeEecccchheeccCCCce
Confidence            9999999999863 3467899999999999999999999998  999999999999999999999999999866321   


Q ss_pred             -------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhC-CCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          531 -------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTG-RLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       531 -------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG-~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                             +..+.+||......++.|+|||||||++|||+|+ +.||  ......+.......+..    .      ..+.
T Consensus       158 ~~~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~--~~~~~~~~~~~i~~~~~----~------~~p~  225 (263)
T d1sm2a_         158 SSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPY--ENRSNSEVVEDISTGFR----L------YKPR  225 (263)
T ss_dssp             -------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTT--CSCCHHHHHHHHHHTCC----C------CCCT
T ss_pred             eecceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCC--CCCCHHHHHHHHHhcCC----C------CCcc
Confidence                   2346688888888899999999999999999995 5555  23344444444333211    1      1122


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          603 EQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      .++.++.+++.+||+.||++||||+||++.|+++++
T Consensus       226 ~~~~~l~~li~~cl~~~p~~Rps~~~il~~L~~i~e  261 (263)
T d1sm2a_         226 LASTHVYQIMNHCWKERPEDRPAFSRLLRQLAEIAE  261 (263)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHh
Confidence            334578999999999999999999999999999865

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.4e-49  Score=402.10  Aligned_cols=259  Identities=20%  Similarity=0.310  Sum_probs=207.7

Q ss_pred             CCCCHHHHHHHHhhhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEE
Q 006019          360 PKLKRSELEAACEDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIG  438 (664)
Q Consensus       360 ~~~~~~el~~~~~~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g  438 (664)
                      |.+..+|+......+.+.||+|+||.||+|++. +++.||||++.....      ..++|.+|+++|++++|||||+++|
T Consensus         7 p~~~~wei~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~------~~~~~~~E~~il~~l~HpnIv~~~~   80 (287)
T d1opja_           7 PNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM------EVEEFLKEAAVMKEIKHPNLVQLLG   80 (287)
T ss_dssp             TTCCTTBCCGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCS------CHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             CCCcccEecHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccc------hHHHHHHHHHHHHhCCCCCEecCCc
Confidence            334444444444445689999999999999976 588999998854321      2467999999999999999999999


Q ss_pred             EEecCCCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEe
Q 006019          439 FCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKL  518 (664)
Q Consensus       439 ~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl  518 (664)
                      +|.+.+  ..++|||||++|+|.+++.......++|..+..|+.|||.||+|||+++  |+||||||+|||||+++.+||
T Consensus        81 ~~~~~~--~~~iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~~--iiHrDlKp~NILl~~~~~~Kl  156 (287)
T d1opja_          81 VCTREP--PFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKV  156 (287)
T ss_dssp             EECSSS--SCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEECGGGCEEE
T ss_pred             cEeeCC--eeEEEeecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHCC--cccCccccCeEEECCCCcEEE
Confidence            998877  5699999999999999998766778999999999999999999999998  999999999999999999999


Q ss_pred             cccCchhhhhhh----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCC
Q 006019          519 SDLSFWNEIAMA----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP  588 (664)
Q Consensus       519 ~DfGla~~~~~~----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~  588 (664)
                      +|||+++.....          ...+.+||......++.|+|||||||++|||+||+.|+.. ..+..+.......+ ..
T Consensus       157 ~DFG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~-~~~~~~~~~~i~~~-~~  234 (287)
T d1opja_         157 ADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP-GIDLSQVYELLEKD-YR  234 (287)
T ss_dssp             CCCCCTTTCCSSSSEEETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSST-TCCHHHHHHHHHTT-CC
T ss_pred             ccccceeecCCCCceeeccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCC-cchHHHHHHHHhcC-CC
Confidence            999999876321          2345678877777899999999999999999997777632 23333332222221 11


Q ss_pred             CccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          589 LQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       589 ~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                               ...+..++.++.+|+.+||+.||++||||.||++.|+.+...
T Consensus       235 ---------~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ei~~~L~~~~~~  276 (287)
T d1opja_         235 ---------MERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQE  276 (287)
T ss_dssp             ---------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTSS
T ss_pred             ---------CCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHh
Confidence                     112333446789999999999999999999999999988653

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-49  Score=401.05  Aligned_cols=244  Identities=20%  Similarity=0.321  Sum_probs=198.3

Q ss_pred             hhhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      .+.+.||+|+||.||+|+++++..||||++....      ...++|.+|+++|++++|||||+++|+|.++   ..++||
T Consensus        16 ~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~------~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~---~~~iv~   86 (272)
T d1qpca_          16 KLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS------MSPDAFLAEANLMKQLQHQRLVRLYAVVTQE---PIYIIT   86 (272)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS------SCHHHHHHHHHHHHHCCCTTBCCEEEEECSS---SCEEEE
T ss_pred             EEeEEEecCCCcEEEEEEECCCCEEEEEEEccCc------CCHHHHHHHHHHHHhCCCCCEeEEEeeeccC---CeEEEE
Confidence            4558899999999999999988999999986432      1246799999999999999999999998654   358999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||+++|+|.++++......++|..+++|+.|||+||+|||+++  |+||||||+||||++++.+||+|||+++.....  
T Consensus        87 Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~~--ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~~  164 (272)
T d1qpca_          87 EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERN--YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEY  164 (272)
T ss_dssp             ECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECTTSCEEECCCTTCEECSSSCE
T ss_pred             EeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCccchhheeeecccceeeccccceEEccCCcc
Confidence            9999999999887555557999999999999999999999998  999999999999999999999999999866321  


Q ss_pred             --------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          531 --------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       531 --------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                              ...+.+||......++.|+|||||||++|||+||+.|+.. .....+.......+..          ...+.
T Consensus       165 ~~~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~-~~~~~~~~~~i~~~~~----------~~~p~  233 (272)
T d1qpca_         165 TAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYP-GMTNPEVIQNLERGYR----------MVRPD  233 (272)
T ss_dssp             ECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSST-TCCHHHHHHHHHTTCC----------CCCCT
T ss_pred             ccccccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCC-CCCHHHHHHHHHhcCC----------CCCcc
Confidence                    2345678877777789999999999999999996665532 2333333333332211          11123


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          603 EQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      .++.++.+++.+||+.||++||||.+|++.|+++..
T Consensus       234 ~~~~~l~~li~~cl~~~P~~Rpt~~ei~~~L~~~ft  269 (272)
T d1qpca_         234 NCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFT  269 (272)
T ss_dssp             TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             cChHHHHHHHHHHcCCCHhHCcCHHHHHHHhhhhhh
Confidence            344678999999999999999999999999998764

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-47  Score=385.62  Aligned_cols=240  Identities=18%  Similarity=0.333  Sum_probs=199.7

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      |.+.||+|+||+||+|+++++..||||+++....      ..++|.+|++++++++|||||+++|+|.+.+  ..++|||
T Consensus         8 ~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~------~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~--~~~iv~E   79 (258)
T d1k2pa_           8 FLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM------SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQR--PIFIITE   79 (258)
T ss_dssp             CCCCCCEETTEEEEEEEETTTEEEEEEEEESSSS------CHHHHHHHHHHHHTCCCTTBCCEEEEECCSS--SEEEEEE
T ss_pred             EeEEEecCCCeEEEEEEECCCCEEEEEEECcCcC------CHHHHHHHHHHHHhcCCCceeeEEEEEeeCC--ceEEEEE
Confidence            5588999999999999999899999999875432      2468999999999999999999999998876  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh----
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM----  529 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~----  529 (664)
                      |+++|+|.+++.. ....+++..+.+|+.|+|+||+|||+++  |+||||||+|||+++++.+||+|||+++....    
T Consensus        80 y~~~g~l~~~~~~-~~~~~~~~~~~~i~~qi~~gl~~LH~~~--iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~  156 (258)
T d1k2pa_          80 YMANGCLLNYLRE-MRHRFQTQQLLEMCKDVCEAMEYLESKQ--FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYT  156 (258)
T ss_dssp             CCTTEEHHHHHHS-GGGCCCHHHHHHHHHHHHHHHHHHHHTT--BCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSCC
T ss_pred             ccCCCcHHHhhhc-cccCCcHHHHHHHHHHHHHHHHHHhhcC--cccccccceeEEEcCCCcEEECcchhheeccCCCce
Confidence            9999999998753 3456899999999999999999999998  99999999999999999999999999975531    


Q ss_pred             ------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          530 ------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       530 ------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                            ....+.+||......++.|+|||||||++|||+| |+.||.  .....+.......+..          ...+.
T Consensus       157 ~~~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~--~~~~~~~~~~i~~~~~----------~~~p~  224 (258)
T d1k2pa_         157 SSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYE--RFTNSETAEHIAQGLR----------LYRPH  224 (258)
T ss_dssp             CCCCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTT--TSCHHHHHHHHHTTCC----------CCCCT
T ss_pred             eecccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCC--CCCHHHHHHHHHhCCC----------CCCcc
Confidence                  1234567888777789999999999999999999 899994  3334444444333211          11223


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 006019          603 EQLETLGELIKSCVRADPEKRPTMRDIAAILREI  636 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i  636 (664)
                      .++.++.+++.+||+.||++||||.+|++.|.+|
T Consensus       225 ~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~di  258 (258)
T d1k2pa_         225 LASEKVYTIMYSCWHEKADERPTFKILLSNILDV  258 (258)
T ss_dssp             TCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHCC
T ss_pred             cccHHHHHHHHHHccCCHhHCcCHHHHHHHhhCC
Confidence            3446789999999999999999999999999764

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-48  Score=392.66  Aligned_cols=253  Identities=21%  Similarity=0.311  Sum_probs=203.9

Q ss_pred             hhhhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          372 EDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      ..+.+.||+|+||.||+|+++++..||||++.....      ..++|.+|+.+|++++|||||+++|+|.+.   ..++|
T Consensus        19 ~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~------~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~---~~~lv   89 (285)
T d1fmka3          19 LRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM------SPEAFLQEAQVMKKLRHEKLVQLYAVVSEE---PIYIV   89 (285)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS------CHHHHHHHHHHHHHCCCTTBCCEEEEECSS---SCEEE
T ss_pred             EEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcccC------CHHHHHHHHHHHHhcccCCEeEEEEEEecC---CeEEE
Confidence            345689999999999999999888999999864321      246799999999999999999999999653   35899


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh-
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA-  530 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~-  530 (664)
                      |||+++|+|.++++......++|.+++.|+.+||.||+|||+.+  |+||||||+|||||+++.+||+|||+++..... 
T Consensus        90 ~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~~--ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~  167 (285)
T d1fmka3          90 TEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN--YVHRDLRAANILVGENLVCKVADFGLARLIEDNE  167 (285)
T ss_dssp             ECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEECGGGCEEECCCCTTC------
T ss_pred             EEecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhhh--eecccccceEEEECCCCcEEEcccchhhhccCCC
Confidence            99999999999987655567999999999999999999999998  999999999999999999999999999865322 


Q ss_pred             ---------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 006019          531 ---------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  601 (664)
Q Consensus       531 ---------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  601 (664)
                               ...+.+||+.....++.++|||||||++|||+||+.|+.. .....+....+..+..          ...+
T Consensus       168 ~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~-~~~~~~~~~~i~~~~~----------~~~~  236 (285)
T d1fmka3         168 YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP-GMVNREVLDQVERGYR----------MPCP  236 (285)
T ss_dssp             --------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSST-TCCHHHHHHHHHTTCC----------CCCC
T ss_pred             ceeeccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCC-CCCHHHHHHHHHhcCC----------CCCC
Confidence                     2345678887778899999999999999999997776632 3334444443332211          1123


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCCCCCCC
Q 006019          602 EEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIP  646 (664)
Q Consensus       602 ~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~~~~~~  646 (664)
                      ..+++++.+++.+||+.||++||+|++|+++|++.....++.-.|
T Consensus       237 ~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~~~~~~~p~~~p  281 (285)
T d1fmka3         237 PECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQYQP  281 (285)
T ss_dssp             TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSCCCCCC
T ss_pred             cccCHHHHHHHHHHcccCHhHCcCHHHHHHHHhhhhcCCCCCCCC
Confidence            334467899999999999999999999999999988765554444

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-47  Score=388.15  Aligned_cols=239  Identities=20%  Similarity=0.289  Sum_probs=194.9

Q ss_pred             ccccCCCeEEEEEEEC---CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          377 VIGSSPIGTVYKGTLS---NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       377 ~iG~G~~G~Vy~g~~~---~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      +||+|+||.||+|.++   ++..||||++....    .....++|.+|+++|++++|||||+++|+|..+   ..++|||
T Consensus        16 ~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~----~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~~---~~~lvmE   88 (285)
T d1u59a_          16 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT----EKADTEEMMREAQIMHQLDNPYIVRLIGVCQAE---ALMLVME   88 (285)
T ss_dssp             EEECCTTEEEEEEEEC---CCEEEEEEEECSSC----CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESS---SEEEEEE
T ss_pred             EEecccCeEEEEEEEecCCCcEEEEEEEEChhc----CHHHHHHHHHHHHHHHhCCCCCEeeEeeeeccC---eEEEEEE
Confidence            4999999999999864   35679999986432    234567899999999999999999999999753   4689999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      ||++|+|.+++.. ....+++..+.+|+.|+|.||+|||+++  |+||||||+|||++.++.+||+|||+++.....   
T Consensus        89 ~~~~g~L~~~l~~-~~~~l~~~~~~~i~~qi~~gL~ylH~~~--iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~  165 (285)
T d1u59a_          89 MAGGGPLHKFLVG-KREEIPVSNVAELLHQVSMGMKYLEEKN--FVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSY  165 (285)
T ss_dssp             CCTTEEHHHHHTT-CTTTSCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCE
T ss_pred             eCCCCcHHHHhhc-cccCCCHHHHHHHHHHHHHHHHHHHhCC--eecCcCchhheeeccCCceeeccchhhhcccccccc
Confidence            9999999998753 3457999999999999999999999998  999999999999999999999999999865321   


Q ss_pred             ---------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 006019          531 ---------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  600 (664)
Q Consensus       531 ---------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  600 (664)
                               +..+.+||......++.|+|||||||++|||+| |+.||...  ...+....+..+.          ....
T Consensus       166 ~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~--~~~~~~~~i~~~~----------~~~~  233 (285)
T d1u59a_         166 YTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM--KGPEVMAFIEQGK----------RMEC  233 (285)
T ss_dssp             ECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC--CTHHHHHHHHTTC----------CCCC
T ss_pred             cccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCC--CHHHHHHHHHcCC----------CCCC
Confidence                     234567777766778999999999999999998 99999532  2333333333221          1122


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhh
Q 006019          601 DEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  637 (664)
Q Consensus       601 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~  637 (664)
                      ++.++.++.+++.+||+.||++||+|.+|++.|+.+.
T Consensus       234 p~~~~~~l~~li~~cl~~~p~~RPs~~~i~~~L~~~~  270 (285)
T d1u59a_         234 PPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACY  270 (285)
T ss_dssp             CTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence            3344567999999999999999999999999999765

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-47  Score=386.04  Aligned_cols=240  Identities=22%  Similarity=0.303  Sum_probs=193.2

Q ss_pred             cccccCCCeEEEEEEECC---CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          376 NVIGSSPIGTVYKGTLSN---GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~---~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      ++||+|+||.||+|.+++   ++.||||++......   ....++|.+|+++|++++|||||+++|+|..+   ..+|||
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~---~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~~---~~~lvm   86 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEAND---PALKDELLAEANVMQQLDNPYIVRMIGICEAE---SWMLVM   86 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC--------CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESS---SEEEEE
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCC---HHHHHHHHHHHHHHHhCCCCCCceEEEEeccC---CEEEEE
Confidence            469999999999998743   467999998643322   34457899999999999999999999999653   358999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++|+|.++++.  ...++|..+++|+.|||.||+|||+++  |+||||||+|||++.++.+||+|||+++....   
T Consensus        87 E~~~~g~L~~~l~~--~~~l~~~~~~~i~~qi~~gl~ylH~~~--iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~  162 (277)
T d1xbba_          87 EMAELGPLNKYLQQ--NRHVKDKNIIELVHQVSMGMKYLEESN--FVHRDLAARNVLLVTQHYAKISDFGLSKALRADEN  162 (277)
T ss_dssp             ECCTTEEHHHHHHH--CTTCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEEETTEEEECCCTTCEECCTTCS
T ss_pred             EcCCCCcHHHHHhh--ccCCCHHHHHHHHHHHHHHHhhHHhCC--cccCCCcchhhcccccCcccccchhhhhhcccccc
Confidence            99999999999863  456999999999999999999999998  99999999999999999999999999986531   


Q ss_pred             ---------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCC
Q 006019          530 ---------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS  599 (664)
Q Consensus       530 ---------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  599 (664)
                               .+..+.+||......++.++|||||||++|||+| |+.||..  ....+....+..+ .         ...
T Consensus       163 ~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~--~~~~~~~~~i~~~-~---------~~~  230 (277)
T d1xbba_         163 YYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRG--MKGSEVTAMLEKG-E---------RMG  230 (277)
T ss_dssp             EEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTT--CCHHHHHHHHHTT-C---------CCC
T ss_pred             ccccccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCC--CCHHHHHHHHHcC-C---------CCC
Confidence                     1234567787767778999999999999999998 8999943  3333333333322 1         112


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhh
Q 006019          600 FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  637 (664)
Q Consensus       600 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~  637 (664)
                      .+..++.++.+++.+||+.||++||||++|++.|+...
T Consensus       231 ~p~~~~~~~~~li~~cl~~dp~~RPs~~~i~~~L~~~~  268 (277)
T d1xbba_         231 CPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYY  268 (277)
T ss_dssp             CCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHH
T ss_pred             CCcccCHHHHHHHHHHcCCCHhHCcCHHHHHHHhhCHH
Confidence            23344567899999999999999999999999998753

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-47  Score=387.52  Aligned_cols=246  Identities=20%  Similarity=0.313  Sum_probs=196.3

Q ss_pred             hhcccccCCCeEEEEEEECCC-----cEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          374 FSNVIGSSPIGTVYKGTLSNG-----VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~-----~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      +.++||+|+||.||+|.+++.     ..||||++....    ......+|.+|+++|++++|||||+++|+|.+.+  ..
T Consensus        11 ~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~----~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~--~~   84 (283)
T d1mqba_          11 RQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY----TEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYK--PM   84 (283)
T ss_dssp             EEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC----CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSS--SE
T ss_pred             eeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECccc----ChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCC--ce
Confidence            458899999999999997542     468999885322    2344567999999999999999999999998877  67


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++|||||.+|++.+++.. ....++|..+++|+.|++.||+|||+++  |+||||||+|||||.++.+||+|||+++...
T Consensus        85 ~~v~e~~~~~~l~~~~~~-~~~~~~~~~~~~i~~~i~~gl~~lH~~~--iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~  161 (283)
T d1mqba_          85 MIITEYMENGALDKFLRE-KDGEFSVLQLVGMLRGIAAGMKYLANMN--YVHRDLAARNILVNSNLVCKVSDFGLSRVLE  161 (283)
T ss_dssp             EEEEECCTTEEHHHHHHH-TTTCSCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEECTTCCEEECCCCC-----
T ss_pred             EEEEEecccCcchhhhhc-ccccccHHHHHHHHHHHHHhhhhccccc--cccCccccceEEECCCCeEEEcccchhhccc
Confidence            999999999999988753 4467999999999999999999999998  9999999999999999999999999998653


Q ss_pred             hh------------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCC
Q 006019          529 MA------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  596 (664)
Q Consensus       529 ~~------------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  596 (664)
                      ..            +..+.+||......++.++|||||||++|||+||+.|+.. .....+.......+.          
T Consensus       162 ~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~-~~~~~~~~~~i~~~~----------  230 (283)
T d1mqba_         162 DDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYW-ELSNHEVMKAINDGF----------  230 (283)
T ss_dssp             ------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTT-TCCHHHHHHHHHTTC----------
T ss_pred             CCCccceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccc-cCCHHHHHHHHhccC----------
Confidence            21            2346788988888899999999999999999997666532 233344433333221          


Q ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          597 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       597 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                      ....+.+++.++.+++.+||+.||++||+|.||++.|+++.+.
T Consensus       231 ~~~~~~~~~~~l~~li~~cl~~~p~~RPt~~eil~~L~~l~~~  273 (283)
T d1mqba_         231 RLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRA  273 (283)
T ss_dssp             CCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred             CCCCchhhHHHHHHHHHHHCcCCHhHCcCHHHHHHHHHHHhhC
Confidence            1122334456799999999999999999999999999998763

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-47  Score=382.69  Aligned_cols=242  Identities=24%  Similarity=0.382  Sum_probs=192.7

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      |.+.||+|+||.||+|+++ |..||||+++...       ..++|.+|++++++++|||||+++|+|.+... ..++|||
T Consensus        11 ~~~~lG~G~fg~Vy~~~~~-~~~vAvK~i~~~~-------~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~-~~~lv~e   81 (262)
T d1byga_          11 LLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA-------TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKG-GLYIVTE   81 (262)
T ss_dssp             EEEEEEECSSCEEEEEEET-TEEEEEEECCCCC---------HHHHHTHHHHTTCCCTTBCCEEEEECCC---CCEEEEC
T ss_pred             EeEEEecCCCeEEEEEEEC-CeEEEEEEECcHH-------HHHHHHHHHHHHHhCCCCCEeeEEEEEEecCC-cEEEEEe
Confidence            4588999999999999984 7889999985322       24679999999999999999999999975432 4589999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      |+++|+|.++++......++|..+++|+.||+.||+|||+.+  |+||||||+|||++.++.+|++|||+++.....   
T Consensus        82 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~~--ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~~~~  159 (262)
T d1byga_          82 YMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN--FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDT  159 (262)
T ss_dssp             CCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEECTTSCEEECCCCC----------
T ss_pred             ccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccCc--eeccccchHhheecCCCCEeecccccceecCCCCcc
Confidence            999999999997554556999999999999999999999988  999999999999999999999999999876432   


Q ss_pred             ---hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHH
Q 006019          531 ---EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE  606 (664)
Q Consensus       531 ---~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  606 (664)
                         ...+.+||+.....++.++|||||||++|||+| |+.||..  ....+....+..+.          ....+...+.
T Consensus       160 ~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~--~~~~~~~~~i~~~~----------~~~~~~~~~~  227 (262)
T d1byga_         160 GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPR--IPLKDVVPRVEKGY----------KMDAPDGCPP  227 (262)
T ss_dssp             --CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTT--SCGGGHHHHHTTTC----------CCCCCTTCCH
T ss_pred             ccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCC--CCHHHHHHHHHcCC----------CCCCCccCCH
Confidence               234567888777789999999999999999999 7877743  23333333332221          1122333446


Q ss_pred             HHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          607 TLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       607 ~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      ++.+++.+||+.||++||||.+|+++|+++..
T Consensus       228 ~~~~li~~cl~~dP~~Rps~~~l~~~L~~i~~  259 (262)
T d1byga_         228 AVYEVMKNCWHLDAAMRPSFLQLREQLEHIKT  259 (262)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcccCHhHCcCHHHHHHHHHHHHh
Confidence            78999999999999999999999999998853

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-46  Score=383.42  Aligned_cols=248  Identities=23%  Similarity=0.340  Sum_probs=197.2

Q ss_pred             hhhcccccCCCeEEEEEEECCC----cEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          373 DFSNVIGSSPIGTVYKGTLSNG----VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~~~----~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      +|.++||+|+||+||+|++.++    ..||||++....    .....++|.+|+++|++++|||||+++|+|.+.+. ..
T Consensus        30 ~~~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~----~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~-~~  104 (311)
T d1r0pa_          30 HFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT----DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEG-SP  104 (311)
T ss_dssp             EEEEEEEEETTEEEEEEEECC----CEEEEEEEECCCC----CHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTT-EE
T ss_pred             ccceEEeecCCeEEEEEEEECCCCEEEEEEEEEECccc----CHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCC-ce
Confidence            3567899999999999997542    358898885321    23456789999999999999999999999876432 57


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++|||||++|+|.++++. ....+++..+++++.|+|+||.|||+.+  |+||||||+|||+|+++.+||+|||+++...
T Consensus       105 ~lv~E~~~~g~l~~~~~~-~~~~~~~~~~~~i~~qia~gL~~lH~~~--iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~  181 (311)
T d1r0pa_         105 LVVLPYMKHGDLRNFIRN-ETHNPTVKDLIGFGLQVAKGMKFLASKK--FVHRDLAARNCMLDEKFTVKVADFGLARDMY  181 (311)
T ss_dssp             EEEEECCTTCBHHHHHHC-TTCCCBHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEECTTCCEEECSSGGGCCTT
T ss_pred             EEEEEEeecCchhhhhcc-ccccchHHHHHHHHHHHHHhhhhhcccC--cccCCccHHhEeECCCCCEEEecccchhhcc
Confidence            999999999999998863 4556889999999999999999999998  9999999999999999999999999998653


Q ss_pred             hh-------------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCC
Q 006019          529 MA-------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDP  595 (664)
Q Consensus       529 ~~-------------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~  595 (664)
                      ..             +..+.+||......++.|+||||||+++|||+||+.||... ....++......+...       
T Consensus       182 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~-~~~~~~~~~i~~g~~~-------  253 (311)
T d1r0pa_         182 DKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD-VNTFDITVYLLQGRRL-------  253 (311)
T ss_dssp             TTTCCCTTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC-------CHHHHHTTCCC-------
T ss_pred             ccccccceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCC-CCHHHHHHHHHcCCCC-------
Confidence            21             23456677777778899999999999999999988887432 2333333333333211       


Q ss_pred             CCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          596 TLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       596 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                         ..+..++.++.+++.+||+.||++||+|.||++.|+++...
T Consensus       254 ---~~p~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~L~~i~~~  294 (311)
T d1r0pa_         254 ---LQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFST  294 (311)
T ss_dssp             ---CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             ---CCcccCcHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHh
Confidence               11223346789999999999999999999999999999865

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.2e-46  Score=385.34  Aligned_cols=245  Identities=21%  Similarity=0.332  Sum_probs=198.8

Q ss_pred             hhcccccCCCeEEEEEEEC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCce
Q 006019          374 FSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  447 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  447 (664)
                      +.+.||+|+||+||+|++.      ++..||||++....    .....++|.+|+++|++++||||++++++|...+  .
T Consensus        17 ~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~----~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~--~   90 (301)
T d1lufa_          17 YVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA----SADMQADFQREAALMAEFDNPNIVKLLGVCAVGK--P   90 (301)
T ss_dssp             EEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC----CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSS--S
T ss_pred             EeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhc----ChHHHHHHHHHHHHHHhcCCCCcccceeeeccCC--c
Confidence            3488999999999999974      35789999986332    2345678999999999999999999999998877  6


Q ss_pred             eEEEEEecCCCChhhhhcccC----------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCC
Q 006019          448 RMMVFEYAPNGTLFEHIHIKE----------------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNS  505 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~~----------------------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~  505 (664)
                      .++||||+++|+|.++++...                      ...++|..++.|+.|+|.||+|||+++  +|||||||
T Consensus        91 ~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~--ivHrDlKp  168 (301)
T d1lufa_          91 MCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERK--FVHRDLAT  168 (301)
T ss_dssp             CEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSG
T ss_pred             eEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCC--eEeeEEcc
Confidence            699999999999999986321                      234899999999999999999999998  99999999


Q ss_pred             CCeEecCCCceEecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCC-CCccCCCC
Q 006019          506 SAVHLTEDYAAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGR-LPYLVDNG  573 (664)
Q Consensus       506 ~NILld~~~~~kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~-~P~~~~~~  573 (664)
                      +|||+|.++.+||+|||+++.....           ...+.+||......++.|+|||||||++|||+||. .||.  ..
T Consensus       169 ~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~--~~  246 (301)
T d1lufa_         169 RNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYY--GM  246 (301)
T ss_dssp             GGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTT--TS
T ss_pred             cceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCC--CC
Confidence            9999999999999999999866322           12455777777778999999999999999999986 5663  33


Q ss_pred             ChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          574 SLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       574 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      ...+....+..+.          ....+..++.++.+|+.+||+.+|++||||.||+++|+++.+
T Consensus       247 ~~~e~~~~v~~~~----------~~~~p~~~~~~~~~li~~cl~~~P~~RPt~~ev~~~L~~i~~  301 (301)
T d1lufa_         247 AHEEVIYYVRDGN----------ILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCE  301 (301)
T ss_dssp             CHHHHHHHHHTTC----------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHcCC----------CCCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence            4444444433321          112233444678999999999999999999999999999864

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-46  Score=372.52  Aligned_cols=237  Identities=18%  Similarity=0.332  Sum_probs=196.9

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. +++.||+|++......+  ....+.+.+|++++++++|||||++++++.+.+  ..++||
T Consensus        10 i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~--~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~--~~~ivm   85 (263)
T d2j4za1          10 IGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK--AGVEHQLRREVEIQSHLRHPNILRLYGYFHDAT--RVYLIL   85 (263)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHH--TTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             EEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccC--hHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECC--EEEEEE
Confidence            4588999999999999975 68899999987543221  223567899999999999999999999999877  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      |||++|+|.+++..  ...+++.....|+.||+.||+|||+.+  |+||||||+|||++.++.+||+|||+++....   
T Consensus        86 Ey~~~g~L~~~l~~--~~~l~e~~~~~i~~qi~~al~~lH~~~--ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~~~~  161 (263)
T d2j4za1          86 EYAPLGTVYRELQK--LSKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRR  161 (263)
T ss_dssp             ECCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECTTSCEEECCCCSCSCCCCCCC
T ss_pred             eecCCCcHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHHCC--eeeeeeccccceecCCCCEeecccceeeecCCCcc
Confidence            99999999999863  346999999999999999999999999  99999999999999999999999999976632   


Q ss_pred             ----hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHH
Q 006019          530 ----AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL  605 (664)
Q Consensus       530 ----~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  605 (664)
                          ++..+.+||...+..++.++|||||||++|||+||+.||.  ..+..+...........           .+...+
T Consensus       162 ~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~--~~~~~~~~~~i~~~~~~-----------~p~~~s  228 (263)
T d2j4za1         162 TTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE--ANTYQETYKRISRVEFT-----------FPDFVT  228 (263)
T ss_dssp             EETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTC--CSSHHHHHHHHHTTCCC-----------CCTTSC
T ss_pred             cccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCC--CCCHHHHHHHHHcCCCC-----------CCccCC
Confidence                2456678998888889999999999999999999999994  33444444443332111           122234


Q ss_pred             HHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          606 ETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       606 ~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .++.+++.+||+.||++|||++|+++
T Consensus       229 ~~~~~li~~~L~~dp~~R~t~~eil~  254 (263)
T d2j4za1         229 EGARDLISRLLKHNPSQRPMLREVLE  254 (263)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HHHHHHHHHHccCCHhHCcCHHHHHc
Confidence            57889999999999999999999975

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-46  Score=377.05  Aligned_cols=243  Identities=20%  Similarity=0.252  Sum_probs=188.2

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. +|+.||||.+......   ....+.|.+|+++|++++|||||++++++.+......++||
T Consensus         8 ~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~---~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~ivm   84 (269)
T d2java1           8 VLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMT---EAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVM   84 (269)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSC---HHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEEE
T ss_pred             EeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCC---HHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEEE
Confidence            4488999999999999964 6899999998754432   34456799999999999999999999999764433578999


Q ss_pred             EecCCCChhhhhccc--CCCCCCHHHHHHHHHHHHHHHHHhhcCC---CCeEEeCcCCCCeEecCCCceEecccCchhhh
Q 006019          453 EYAPNGTLFEHIHIK--ESEHLDWGMRLRIAMGMAYCLEHMHQLN---PPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~--~~~~l~~~~~~~ia~~ia~gL~yLH~~~---~~ivHrDLk~~NILld~~~~~kl~DfGla~~~  527 (664)
                      |||++|+|.+++...  ....+++..+..++.|++.||+|||+.+   .+|+||||||+|||+++++.+||+|||+++..
T Consensus        85 Ey~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~~  164 (269)
T d2java1          85 EYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARIL  164 (269)
T ss_dssp             ECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHHHC
T ss_pred             ecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccceeec
Confidence            999999999998632  3567999999999999999999999754   35999999999999999999999999999876


Q ss_pred             hhh---------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 006019          528 AMA---------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       528 ~~~---------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                      ...         +..+.+||......++.++|||||||++|||+||+.||.  ..+..+.......+..          .
T Consensus       165 ~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~--~~~~~~~~~~i~~~~~----------~  232 (269)
T d2java1         165 NHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFT--AFSQKELAGKIREGKF----------R  232 (269)
T ss_dssp             -----------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCC--CSSHHHHHHHHHHTCC----------C
T ss_pred             ccCCCccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCC--CCCHHHHHHHHHcCCC----------C
Confidence            322         234567888888889999999999999999999999994  3334444444333211          1


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ..+...+.++.+++.+||+.||++|||+.|+++
T Consensus       233 ~~~~~~s~~l~~li~~~L~~dp~~Rps~~ell~  265 (269)
T d2java1         233 RIPYRYSDELNEIITRMLNLKDYHRPSVEEILE  265 (269)
T ss_dssp             CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             CCCcccCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence            112233457899999999999999999999875

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-46  Score=389.38  Aligned_cols=245  Identities=21%  Similarity=0.314  Sum_probs=193.2

Q ss_pred             hhhhcccccCCCeEEEEEEECC------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCC
Q 006019          372 EDFSNVIGSSPIGTVYKGTLSN------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEE  444 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~~~------~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~  444 (664)
                      ..+.+.||+|+||+||+|++..      ...||||.+.....    ......|.+|+.+|.++ +|||||+++|+|.+.+
T Consensus        39 ~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~----~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~  114 (325)
T d1rjba_          39 LEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKAD----SSEREALMSELKMMTQLGSHENIVNLLGACTLSG  114 (325)
T ss_dssp             EEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             eEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccC----HHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCC
Confidence            3456899999999999999643      23688888754322    22346799999999998 8999999999998877


Q ss_pred             CceeEEEEEecCCCChhhhhcccC---------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCc
Q 006019          445 PFTRMMVFEYAPNGTLFEHIHIKE---------------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYL  503 (664)
Q Consensus       445 ~~~~~lV~Ey~~~GsL~~~l~~~~---------------------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDL  503 (664)
                        ..++|||||++|+|.++++...                     ...++|..++.|+.||+.||+|||+++  ||||||
T Consensus       115 --~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~--IiHRDl  190 (325)
T d1rjba_         115 --PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKS--CVHRDL  190 (325)
T ss_dssp             --SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTT--EEETTC
T ss_pred             --eEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCC--eeeccC
Confidence              6699999999999999997432                     135899999999999999999999998  999999


Q ss_pred             CCCCeEecCCCceEecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCC
Q 006019          504 NSSAVHLTEDYAAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVD  571 (664)
Q Consensus       504 k~~NILld~~~~~kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~  571 (664)
                      ||+|||++.++.+||+|||+|+.....           +..+.+||......++.++|||||||++|||+| |+.||...
T Consensus       191 Kp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~  270 (325)
T d1rjba_         191 AARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGI  270 (325)
T ss_dssp             SGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred             chhccccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCC
Confidence            999999999999999999999865322           234667887777789999999999999999998 89999533


Q ss_pred             CCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHh
Q 006019          572 NGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILRE  635 (664)
Q Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~  635 (664)
                      ...  +.....+.....         ...+..++.++.+|+.+||+.||++||||+||++.|..
T Consensus       271 ~~~--~~~~~~~~~~~~---------~~~p~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~  323 (325)
T d1rjba_         271 PVD--ANFYKLIQNGFK---------MDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGC  323 (325)
T ss_dssp             CCS--HHHHHHHHTTCC---------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             CHH--HHHHHHHhcCCC---------CCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHhC
Confidence            222  222223322111         12233445679999999999999999999999999863

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-45  Score=369.69  Aligned_cols=242  Identities=23%  Similarity=0.343  Sum_probs=192.3

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecC--CCceeEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEE--EPFTRMM  450 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~~~l  450 (664)
                      |.+.||+|+||+||+|+.. +++.||+|++......   ....+.|.+|+++|++++|||||++++++...  +....++
T Consensus        13 ~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~---~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~i   89 (270)
T d1t4ha_          13 FDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLT---KSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL   89 (270)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC---HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEE
T ss_pred             eeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCC---HHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEE
Confidence            4568999999999999975 5889999998754322   34456799999999999999999999998642  2225789


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEec-CCCceEecccCchhhhhh
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT-EDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld-~~~~~kl~DfGla~~~~~  529 (664)
                      ||||+++|+|.+++..  ...+++..+..++.||+.||+|||+.+++|+||||||+|||++ +++.+||+|||+++....
T Consensus        90 vmE~~~~g~L~~~l~~--~~~~~~~~~~~~~~qi~~gl~yLH~~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~~  167 (270)
T d1t4ha_          90 VTELMTSGTLKTYLKR--FKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA  167 (270)
T ss_dssp             EEECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCT
T ss_pred             EEeCCCCCcHHHHHhc--cccccHHHHHHHHHHHHHHHHHHHHCCCCEEeCCcChhhceeeCCCCCEEEeecCcceeccC
Confidence            9999999999999863  3569999999999999999999999888899999999999997 578999999999986532


Q ss_pred             h-------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          530 A-------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       530 ~-------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                      .       +..+.+||.... .++.++|||||||++|||+||+.||.. .....+.......+...  ..       .+.
T Consensus       168 ~~~~~~~GT~~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~g~~Pf~~-~~~~~~~~~~i~~~~~~--~~-------~~~  236 (270)
T d1t4ha_         168 SFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSE-CQNAAQIYRRVTSGVKP--AS-------FDK  236 (270)
T ss_dssp             TSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTT-CSSHHHHHHHHTTTCCC--GG-------GGG
T ss_pred             CccCCcccCccccCHHHhCC-CCCCcCchhhHHHHHHHHHHCCCCCCC-cccHHHHHHHHHcCCCC--cc-------cCc
Confidence            2       335667887765 589999999999999999999999943 22333333333332111  11       111


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          603 EQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ....++.+++.+||+.||++|||+.|+++
T Consensus       237 ~~~~~~~~li~~~l~~dp~~R~s~~ell~  265 (270)
T d1t4ha_         237 VAIPEVKEIIEGCIRQNKDERYSIKDLLN  265 (270)
T ss_dssp             CCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             cCCHHHHHHHHHHccCCHhHCcCHHHHhC
Confidence            22346889999999999999999999875

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-45  Score=372.84  Aligned_cols=238  Identities=19%  Similarity=0.262  Sum_probs=188.9

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||+||+|+.. +|+.||||++......    ...+.|.+|+++|++++|||||++++++.+.+  ..++||
T Consensus         9 ~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~----~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~--~~~ivm   82 (271)
T d1nvra_           9 LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAV----DCPENIKKEICINKMLNHENVVKFYGHRREGN--IQYLFL   82 (271)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-----------CHHHHHHHHHTCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             EEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcc----hHHHHHHHHHHHHHhCCCCCEeeEeeeeccCc--eeEEEE
Confidence            4488999999999999974 6899999998754322    23457899999999999999999999999877  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+++|+|.+++.  ....+++..+..++.|++.||+|||+++  |+||||||+|||+++++.+||+|||+++....   
T Consensus        83 Ey~~gg~L~~~l~--~~~~l~e~~~~~i~~qi~~al~ylH~~~--IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~  158 (271)
T d1nvra_          83 EYCSGGELFDRIE--PDIGMPEPDAQRFFHQLMAGVVYLHGIG--ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNR  158 (271)
T ss_dssp             ECCTTEEGGGGSB--TTTBCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEECTTCCEEECCCTTCEECEETTE
T ss_pred             eccCCCcHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHcC--CccCcccHHHEEECCCCCEEEccchhheeeccCCc
Confidence            9999999999986  3457999999999999999999999999  99999999999999999999999999986521   


Q ss_pred             --------hhhhcccccccCCCCC-CcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 006019          530 --------AEMAATSKKLSSAPSA-SLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  600 (664)
Q Consensus       530 --------~~~~~~~pe~~~~~~~-s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  600 (664)
                              ++..+.+||......+ +.++|||||||++|||+||+.||.........+.. .......         ...
T Consensus       159 ~~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~~-~~~~~~~---------~~~  228 (271)
T d1nvra_         159 ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSD-WKEKKTY---------LNP  228 (271)
T ss_dssp             ECCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHHHH-HHTTCTT---------STT
T ss_pred             cccccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHHHHHH-HhcCCCC---------CCc
Confidence                    2345678887765554 67899999999999999999999644332222221 1111110         011


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          601 DEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       601 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ....+.++.+++.+||+.||++|||++|+++
T Consensus       229 ~~~~s~~~~~li~~~L~~dP~~R~t~~eil~  259 (271)
T d1nvra_         229 WKKIDSAPLALLHKILVENPSARITIPDIKK  259 (271)
T ss_dssp             GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             cccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            1223356889999999999999999999865

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-45  Score=375.05  Aligned_cols=238  Identities=17%  Similarity=0.195  Sum_probs=191.5

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. ++..||||++.....     ...+.|.+|+++|++++|||||++++++.+.+  ..++||
T Consensus        16 i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~-----~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~--~~~lvm   88 (288)
T d2jfla1          16 IIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSE-----EELEDYMVEIDILASCDHPNIVKLLDAFYYEN--NLWILI   88 (288)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSS-----GGGGGTHHHHHHHHHCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             EeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCH-----HHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCC--eEEEEE
Confidence            3478999999999999975 688999999875432     22457899999999999999999999999877  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      |||++|+|.+++... ...+++..+..|+.|++.||+|||+++  |+||||||+|||++.++.+||+|||+++.....  
T Consensus        89 Ey~~~g~L~~~~~~~-~~~l~e~~~~~i~~qi~~gL~ylH~~~--ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~~  165 (288)
T d2jfla1          89 EFCAGGAVDAVMLEL-ERPLTESQIQVVCKQTLDALNYLHDNK--IIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQ  165 (288)
T ss_dssp             ECCTTEEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTSCEEECCCTTCEECHHHHH
T ss_pred             ecCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCC--EEEeecChhheeECCCCCEEEEechhhhccCCCcc
Confidence            999999999987532 456999999999999999999999999  999999999999999999999999998755321  


Q ss_pred             -------hhhccccccc-----CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 006019          531 -------EMAATSKKLS-----SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       531 -------~~~~~~pe~~-----~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                             +..+.+||..     ....++.|+|||||||++|||+||+.||...  ...+...........        ..
T Consensus       166 ~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~--~~~~~~~~i~~~~~~--------~~  235 (288)
T d2jfla1         166 RRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHEL--NPMRVLLKIAKSEPP--------TL  235 (288)
T ss_dssp             HHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTS--CGGGHHHHHHHSCCC--------CC
T ss_pred             cccccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCC--CHHHHHHHHHcCCCC--------CC
Confidence                   2345678765     3455789999999999999999999999432  223333333332111        11


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ..+...+.++.+++.+||+.||++|||+.|+++
T Consensus       236 ~~~~~~s~~~~~li~~~L~~dp~~R~t~~ell~  268 (288)
T d2jfla1         236 AQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQ  268 (288)
T ss_dssp             SSGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             CccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            122344567899999999999999999999865

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-45  Score=370.58  Aligned_cols=236  Identities=20%  Similarity=0.302  Sum_probs=193.7

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+. .+|+.||||++.......     .+.+.+|+++|++++|||||++++++.+.+  ..++||
T Consensus        24 ~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~-----~~~~~~E~~il~~l~HpnIv~~~~~~~~~~--~~~ivm   96 (293)
T d1yhwa1          24 RFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK-----KELIINEILVMRENKNPNIVNYLDSYLVGD--ELWVVM   96 (293)
T ss_dssp             SCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSC-----HHHHHHHHHHHHHCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             EEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChH-----HHHHHHHHHHHHhCCCCCEeeEeEEEEECC--EEEEEE
Confidence            447899999999999996 468999999987554322     467999999999999999999999999877  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      |||++|+|.+++..   ..+++.....|+.|++.||+|||+++  |+||||||+|||++.++.+||+|||+++....   
T Consensus        97 Ey~~gg~L~~~~~~---~~l~~~~~~~i~~qi~~aL~yLH~~~--iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~  171 (293)
T d1yhwa1          97 EYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLHSNQ--VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS  171 (293)
T ss_dssp             ECCTTCBHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTCCEEECCCTTCEECCSTTC
T ss_pred             EecCCCcHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHHHCC--CcccCCcHHHeEECCCCcEeeccchhheeeccccc
Confidence            99999999998753   35999999999999999999999999  99999999999999999999999999986532   


Q ss_pred             ------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          530 ------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       530 ------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                            ++..+.+||......++.++|||||||++|||+||+.||..  .+..+...........       .+ ..+..
T Consensus       172 ~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~--~~~~~~~~~~~~~~~~-------~~-~~~~~  241 (293)
T d1yhwa1         172 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLN--ENPLRALYLIATNGTP-------EL-QNPEK  241 (293)
T ss_dssp             CBCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTT--SCHHHHHHHHHHHCSC-------CC-SSGGG
T ss_pred             cccccccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCC--CCHHHHHHHHHhCCCC-------CC-CCccc
Confidence                  23456788988888899999999999999999999999943  2223333332222110       00 11233


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .+.++.+++.+||+.||++|||+.|+++
T Consensus       242 ~s~~~~~li~~~L~~dP~~R~s~~eil~  269 (293)
T d1yhwa1         242 LSAIFRDFLNRCLDMDVEKRGSAKELLQ  269 (293)
T ss_dssp             SCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             CCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            4467899999999999999999999875

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-45  Score=377.23  Aligned_cols=249  Identities=23%  Similarity=0.393  Sum_probs=197.2

Q ss_pred             hhcccccCCCeEEEEEEECC-Cc--EEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCCCceeE
Q 006019          374 FSNVIGSSPIGTVYKGTLSN-GV--EIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEEPFTRM  449 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~-~~--~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~~~  449 (664)
                      +.++||+|+||.||+|++.+ |.  .||||++.....    ....++|.+|+++|+++ +|||||+++|+|.+.+  ..+
T Consensus        14 ~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~--~~~   87 (309)
T d1fvra_          14 FQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYAS----KDDHRDFAGELEVLCKLGHHPNIINLLGACEHRG--YLY   87 (309)
T ss_dssp             EEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC----------CHHHHHHHHHTTCCCCTTBCCEEEEEEETT--EEE
T ss_pred             EEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccC----hHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCC--eeE
Confidence            45889999999999999754 44  466776643322    22346799999999998 7999999999999877  779


Q ss_pred             EEEEecCCCChhhhhccc--------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCc
Q 006019          450 MVFEYAPNGTLFEHIHIK--------------ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYA  515 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~--------------~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~  515 (664)
                      +||||+++|+|.++++..              ....++|..+.+++.|||+||.|||+.+  |+||||||+|||++.++.
T Consensus        88 iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~--iiHrDlkp~NIL~~~~~~  165 (309)
T d1fvra_          88 LAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ--FIHRDLAARNILVGENYV  165 (309)
T ss_dssp             EEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECGGGC
T ss_pred             EEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCC--ccccccccceEEEcCCCc
Confidence            999999999999998743              2467999999999999999999999998  999999999999999999


Q ss_pred             eEecccCchhhhhh--------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCC-CccCCCCChHHHHHHHhcCC
Q 006019          516 AKLSDLSFWNEIAM--------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRL-PYLVDNGSLEDWAADYLSGV  586 (664)
Q Consensus       516 ~kl~DfGla~~~~~--------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~-P~~~~~~~~~~~~~~~~~~~  586 (664)
                      +||+|||+++....        .+..+.+||......++.++|||||||++|||+||.. ||  ...+..+.......+.
T Consensus       166 ~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~--~~~~~~~~~~~i~~~~  243 (309)
T d1fvra_         166 AKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPY--CGMTCAELYEKLPQGY  243 (309)
T ss_dssp             EEECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTT--TTCCHHHHHHHGGGTC
T ss_pred             eEEccccccccccccccccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCC--CCCCHHHHHHHHHhcC
Confidence            99999999875531        2234556777777778999999999999999999765 56  2334444444333321


Q ss_pred             CCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCCCCC
Q 006019          587 QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGITPD  642 (664)
Q Consensus       587 ~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~~~~  642 (664)
                      .          ...+..++.++.+++.+||+.||++||||+||++.|+++.+....
T Consensus       244 ~----------~~~~~~~~~~~~~li~~cl~~dP~~RPs~~eil~~L~~i~~~~~~  289 (309)
T d1fvra_         244 R----------LEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERKT  289 (309)
T ss_dssp             C----------CCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSSSC
T ss_pred             C----------CCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhcCcC
Confidence            1          112233446799999999999999999999999999999875543

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-45  Score=371.72  Aligned_cols=244  Identities=21%  Similarity=0.331  Sum_probs=187.5

Q ss_pred             hhcccccCCCeEEEEEEECC--C--cEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeE
Q 006019          374 FSNVIGSSPIGTVYKGTLSN--G--VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRM  449 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~--~--~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~  449 (664)
                      +.+.||+|+||.||+|++..  +  ..||||++.......  ....++|.+|+++|++++|||||+++|+|.+.   ..+
T Consensus        12 ~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~--~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~~---~~~   86 (273)
T d1u46a_          12 LLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQ--PEAMDDFIREVNAMHSLDHRNLIRLYGVVLTP---PMK   86 (273)
T ss_dssp             EEEECC----CCCEEEEEECTTSCEEEEEEEC----------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS---SCE
T ss_pred             EEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCC--HHHHHHHHHHHHHHHhCCCCCEEEEEEEEeec---chh
Confidence            45789999999999998642  2  468899886544322  34557899999999999999999999999754   358


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                      +||||+++|++.+++... ...+++..+++++.|+|.||.|||+++  |+||||||+|||++.++.+||+|||+++....
T Consensus        87 lv~e~~~~~~l~~~~~~~-~~~l~~~~~~~~~~qi~~gl~ylH~~~--iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~  163 (273)
T d1u46a_          87 MVTELAPLGSLLDRLRKH-QGHFLLGTLSRYAVQVAEGMGYLESKR--FIHRDLAARNLLLATRDLVKIGDFGLMRALPQ  163 (273)
T ss_dssp             EEEECCTTCBHHHHHHHH-GGGSCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEEEETTEEEECCCTTCEECCC
T ss_pred             eeeeeecCcchhhhhhcc-cCCCCHHHHHHHHHHHHHHHHHhhhCC--EeeeeecHHHhccccccceeeccchhhhhccc
Confidence            999999999999887643 456999999999999999999999998  99999999999999999999999999886532


Q ss_pred             h------------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCC
Q 006019          530 A------------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  596 (664)
Q Consensus       530 ~------------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  596 (664)
                      .            ...+.+||......++.++|||||||++|||+| |+.||.  +.+..+....+.......       
T Consensus       164 ~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~--~~~~~~~~~~i~~~~~~~-------  234 (273)
T d1u46a_         164 NDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWI--GLNGSQILHKIDKEGERL-------  234 (273)
T ss_dssp             -CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTT--TCCHHHHHHHHHTSCCCC-------
T ss_pred             CCCcceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCC--CcCHHHHHHHHHhCCCCC-------
Confidence            1            224456777766778999999999999999998 899994  344444444443332111       


Q ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 006019          597 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREI  636 (664)
Q Consensus       597 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i  636 (664)
                        ..+...+.++.+++.+||+.||++||||.+|++.|++.
T Consensus       235 --~~~~~~~~~l~~li~~cl~~dp~~RPt~~ei~~~L~~~  272 (273)
T d1u46a_         235 --PRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEA  272 (273)
T ss_dssp             --CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             --CCcccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence              11223345689999999999999999999999999874

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-45  Score=373.93  Aligned_cols=245  Identities=19%  Similarity=0.313  Sum_probs=189.3

Q ss_pred             hhhhcccccCCCeEEEEEEECC----CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCce
Q 006019          372 EDFSNVIGSSPIGTVYKGTLSN----GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFT  447 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~~~----~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  447 (664)
                      .++.+.||+|+||.||+|++..    +..||||.+....    .....+.|.+|+++|++++|||||+++|++.+ +  .
T Consensus         9 ~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~----~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~-~--~   81 (273)
T d1mp8a_           9 IELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCT----SDSVREKFLQEALTMRQFDHPHIVKLIGVITE-N--P   81 (273)
T ss_dssp             EEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTT----SHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS-S--S
T ss_pred             eEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEecccc----CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-C--e
Confidence            3456899999999999999753    3457777764222    23456789999999999999999999999964 3  4


Q ss_pred             eEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhh
Q 006019          448 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~  527 (664)
                      .++||||+++|+|.+++.. ....+++..++.++.|++.||+|||+++  |+||||||+||++++++.+||+|||+++..
T Consensus        82 ~~iv~E~~~~g~l~~~~~~-~~~~l~~~~~~~~~~qi~~gl~ylH~~~--iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~  158 (273)
T d1mp8a_          82 VWIIMELCTLGELRSFLQV-RKYSLDLASLILYAYQLSTALAYLESKR--FVHRDIAARNVLVSSNDCVKLGDFGLSRYM  158 (273)
T ss_dssp             CEEEEECCTTEEHHHHHHH-TTTTSCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEEEETTEEEECC-------
T ss_pred             EEEEEEeccCCcHHhhhhc-cCCCCCHHHHHHHHHHHHHHhhhhcccC--eeccccchhheeecCCCcEEEccchhheec
Confidence            6899999999999998753 4457999999999999999999999999  999999999999999999999999999865


Q ss_pred             hhh----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCC
Q 006019          528 AMA----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  596 (664)
Q Consensus       528 ~~~----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  596 (664)
                      ...          +..+.+||......++.++|||||||++|||+| |+.||...  ...+....+..+..         
T Consensus       159 ~~~~~~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~--~~~~~~~~i~~~~~---------  227 (273)
T d1mp8a_         159 EDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGV--KNNDVIGRIENGER---------  227 (273)
T ss_dssp             ------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTC--CGGGHHHHHHTTCC---------
T ss_pred             cCCcceeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCC--CHHHHHHHHHcCCC---------
Confidence            321          234566777777788999999999999999998 89998432  22233333332211         


Q ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          597 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       597 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                       ...+..++.++.+++.+||+.||++||||.||++.|+++++
T Consensus       228 -~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ei~~~L~~i~~  268 (273)
T d1mp8a_         228 -LPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILE  268 (273)
T ss_dssp             -CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -CCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence             12233445679999999999999999999999999998864

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.1e-44  Score=372.71  Aligned_cols=239  Identities=18%  Similarity=0.192  Sum_probs=192.7

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      ..+.||+|+||.||+|+. .++..||||++.......  ....+.|.+|+++|++++|||||++++++.+.+  ..++||
T Consensus        19 ~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~--~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~--~~~iv~   94 (309)
T d1u5ra_          19 DLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQS--NEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREH--TAWLVM   94 (309)
T ss_dssp             EEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCH--HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             eeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccC--HHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECC--EEEEEE
Confidence            347899999999999996 468899999987544322  344567999999999999999999999998877  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      |||++|+|..++.  ....+++..+..|+.||+.||+|||+++  |+||||||+|||+++++.+||+|||+++....   
T Consensus        95 E~~~~g~l~~~~~--~~~~l~e~~~~~i~~qi~~aL~yLH~~~--iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~~~~  170 (309)
T d1u5ra_          95 EYCLGSASDLLEV--HKKPLQEVEIAAVTHGALQGLAYLHSHN--MIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANS  170 (309)
T ss_dssp             ECCSEEHHHHHHH--HTSCCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCSGGGEEEETTTEEEECCCTTCBSSSSBCC
T ss_pred             EecCCCchHHHHH--hCCCCCHHHHHHHHHHHHHHHHHHHhCC--EeccCCCcceEEECCCCCEEEeecccccccCCCCc
Confidence            9999999976654  3457999999999999999999999999  99999999999999999999999999986642   


Q ss_pred             --hhhhcccccccC---CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHH
Q 006019          530 --AEMAATSKKLSS---APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQ  604 (664)
Q Consensus       530 --~~~~~~~pe~~~---~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  604 (664)
                        ++..+.+||...   ...++.++|||||||++|||+||+.||..  ....+...........  ...       +...
T Consensus       171 ~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~--~~~~~~~~~i~~~~~~--~~~-------~~~~  239 (309)
T d1u5ra_         171 FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFN--MNAMSALYHIAQNESP--ALQ-------SGHW  239 (309)
T ss_dssp             CCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTT--SCHHHHHHHHHHSCCC--CCS-------CTTS
T ss_pred             cccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCC--CCHHHHHHHHHhCCCC--CCC-------CCCC
Confidence              345677888764   34578999999999999999999999943  2333333333332111  111       1122


Q ss_pred             HHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          605 LETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       605 ~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ++++.+++.+||+.||++|||+.|+++
T Consensus       240 s~~~~~li~~~L~~dP~~Rpt~~ell~  266 (309)
T d1u5ra_         240 SEYFRNFVDSCLQKIPQDRPTSEVLLK  266 (309)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             CHHHHHHHHHHCcCChhHCcCHHHHHh
Confidence            356899999999999999999999876

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-45  Score=377.53  Aligned_cols=242  Identities=17%  Similarity=0.284  Sum_probs=192.4

Q ss_pred             hhcccccCCCeEEEEEEEC-CCc----EEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCcee
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGV----EIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~----~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~  448 (664)
                      +.+.||+|+||+||+|++. +|+    .||+|++.....    ....++|.+|+++|++++|||||+++|+|.+.+   .
T Consensus        13 ~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~----~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~---~   85 (317)
T d1xkka_          13 KIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATS----PKANKEILDEAYVMASVDNPHVCRLLGICLTST---V   85 (317)
T ss_dssp             EEEEEEECSSEEEEEEEECC----CCEEEEEEEECC--------CTHHHHHHHHHHHHHCCCTTBCCEEEEEESSS---E
T ss_pred             EeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccC----HHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCC---e
Confidence            3489999999999999974 343    578887753322    234578999999999999999999999998753   5


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++++||+.+|+|.+++.. ....+++..+++|+.|||.||+|||+++  |+||||||+|||++.++.+||+|||+++...
T Consensus        86 ~~v~e~~~~~~l~~~~~~-~~~~~~~~~~~~i~~qi~~gl~yLH~~~--iiHrDlKp~NIll~~~~~~kl~DFGla~~~~  162 (317)
T d1xkka_          86 QLITQLMPFGCLLDYVRE-HKDNIGSQYLLNWCVQIAKGMNYLEDRR--LVHRDLAARNVLVKTPQHVKITDFGLAKLLG  162 (317)
T ss_dssp             EEEEECCTTCBHHHHHHH-TSSSCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEEETTEEEECCCSHHHHTT
T ss_pred             eEEEEeccCCcccccccc-cccCCCHHHHHHHHHHHHHHHHHHHHcC--cccCcchhhcceeCCCCCeEeeccccceecc
Confidence            789999999999998764 4567999999999999999999999998  9999999999999999999999999998763


Q ss_pred             hh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChHHHHHHHhcCCCCCccccCCC
Q 006019          529 MA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPT  596 (664)
Q Consensus       529 ~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  596 (664)
                      ..           +..+.+||......++.++|||||||++|||+| |+.||...  ...+.......+. .        
T Consensus       163 ~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~--~~~~~~~~i~~~~-~--------  231 (317)
T d1xkka_         163 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI--PASEISSILEKGE-R--------  231 (317)
T ss_dssp             TTCC--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTS--CGGGHHHHHHHTC-C--------
T ss_pred             cccccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCC--CHHHHHHHHHcCC-C--------
Confidence            21           235567887777789999999999999999999 88888432  2222222222221 1        


Q ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhh
Q 006019          597 LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREIT  637 (664)
Q Consensus       597 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~  637 (664)
                       ...++.++.++.+++.+||+.||++||||.||++.|+.+.
T Consensus       232 -~~~p~~~~~~~~~li~~cl~~dP~~RPs~~eil~~l~~~~  271 (317)
T d1xkka_         232 -LPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMA  271 (317)
T ss_dssp             -CCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             -CCCCcccCHHHHHHHHHhCCCChhhCcCHHHHHHHHHHHH
Confidence             1223344567899999999999999999999999998875

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-44  Score=375.92  Aligned_cols=252  Identities=15%  Similarity=0.250  Sum_probs=194.3

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||+||+|+.. +|..||+|++.....    ....+++.+|+++|++++|||||++++++.+.+  ..++|||
T Consensus        11 ~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~----~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~--~~~iVmE   84 (322)
T d1s9ja_          11 ISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIK----PAIRNQIIRELQVLHECNSPYIVGFYGAFYSDG--EISICME   84 (322)
T ss_dssp             EEEEECCSSCCEEEEEETTTTEEEEEEEEECCCC----TTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSS--EEEEEEE
T ss_pred             EEEEecCCCeEEEEEEECCCCcEEEEEEEChhhC----HHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC--EEEEEEE
Confidence            378999999999999964 689999999875432    234568999999999999999999999999877  7899999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh--
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA--  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~-~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~--  530 (664)
                      ||++|+|.++++.  ...+++..+..++.|++.||.|||+ ++  |+||||||+|||+++++.+||+|||+|+.....  
T Consensus        85 y~~gg~L~~~l~~--~~~l~~~~~~~~~~qil~aL~yLH~~~~--IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~  160 (322)
T d1s9ja_          85 HMDGGSLDQVLKK--AGRIPEQILGKVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMA  160 (322)
T ss_dssp             CCTTEEHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHHHC--CCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHTC
T ss_pred             cCCCCcHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHHhCC--EEccccCHHHeeECCCCCEEEeeCCCccccCCCcc
Confidence            9999999999963  3469999999999999999999997 57  999999999999999999999999999876432  


Q ss_pred             -----hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHH-hcCCCC------------Ccc-
Q 006019          531 -----EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADY-LSGVQP------------LQQ-  591 (664)
Q Consensus       531 -----~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~-~~~~~~------------~~~-  591 (664)
                           +..+.+||...+..++.++||||+||++|||+||+.||...+....+..... ..+...            ... 
T Consensus       161 ~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (322)
T d1s9ja_         161 NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSY  240 (322)
T ss_dssp             ---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCCTTHHHHHC-------------------------
T ss_pred             ccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhcCCcccCCccccccccccccc
Confidence                 2345678888888899999999999999999999999965433222111000 000000            000 


Q ss_pred             ----------------ccCCCCCCCC-HHHHHHHHHHHHHhccCCCCCCCCHHHHHH--HHHhh
Q 006019          592 ----------------FVDPTLSSFD-EEQLETLGELIKSCVRADPEKRPTMRDIAA--ILREI  636 (664)
Q Consensus       592 ----------------~~d~~~~~~~-~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~--~L~~i  636 (664)
                                      +........+ .....++.+++.+||+.||++|||++|+++  .+++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~L~Hpf~~~~  304 (322)
T d1s9ja_         241 GMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRS  304 (322)
T ss_dssp             -----CCCCHHHHHHHHHTSCCCCCCBTTBCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHHH
T ss_pred             ccccccchhHHHHHhhhhccCCccCccccCCHHHHHHHHHHcCCChhHCcCHHHHhhCHhhCcC
Confidence                            0000000000 112356889999999999999999999987  35543

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.1e-44  Score=367.65  Aligned_cols=240  Identities=18%  Similarity=0.283  Sum_probs=185.1

Q ss_pred             hhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      ++.+.||+|+||+||+|+.. +++.||||++.......    ....|.+|+++|++++|||||++++++.+.+  ..++|
T Consensus        12 ~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~----~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~--~~~lv   85 (307)
T d1a06a_          12 DFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEG----KEGSMENEIAVLHKIKHPNIVALDDIYESGG--HLYLI   85 (307)
T ss_dssp             EEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC--------------CHHHHHHHTCCCTTBCCEEEEEECSS--EEEEE
T ss_pred             EEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhh----HHHHHHHHHHHHHhCCCCCCCcEEEEEEECC--EEEEE
Confidence            45689999999999999975 68999999997544322    2356889999999999999999999998877  77999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEec---CCCceEecccCchhhhh
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT---EDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld---~~~~~kl~DfGla~~~~  528 (664)
                      ||||++|+|.+++.  ....+++.....++.|++.||+|||+.+  |+||||||+|||++   +++.+||+|||+++...
T Consensus        86 mE~~~gg~L~~~l~--~~~~l~e~~~~~~~~qi~~al~ylH~~~--iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~  161 (307)
T d1a06a_          86 MQLVSGGELFDRIV--EKGFYTERDASRLIFQVLDAVKYLHDLG--IVHRDLKPENLLYYSLDEDSKIMISDFGLSKMED  161 (307)
T ss_dssp             ECCCCSCBHHHHHH--TCSCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEESSSSTTCCEEECCC-------
T ss_pred             EeccCCCcHHHhhh--cccCCCHHHHHHHHHHHHHHHHhhhhce--eeeEEecccceeecccCCCceEEEeccceeEEcc
Confidence            99999999999996  3457999999999999999999999998  99999999999995   57899999999998653


Q ss_pred             h--------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 006019          529 M--------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  600 (664)
Q Consensus       529 ~--------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  600 (664)
                      .        ++..+.+||......++.++|||||||++|||+||+.||..  ....+.............   .+    .
T Consensus       162 ~~~~~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~--~~~~~~~~~i~~~~~~~~---~~----~  232 (307)
T d1a06a_         162 PGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYD--ENDAKLFEQILKAEYEFD---SP----Y  232 (307)
T ss_dssp             -----------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCC--SSHHHHHHHHHTTCCCCC---TT----T
T ss_pred             CCCeeeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCC--CCHHHHHHHHhccCCCCC---Cc----c
Confidence            2        23456789988888899999999999999999999999943  333343344443321111   11    1


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          601 DEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       601 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ....+.++.+++.+||+.||++|||+.|+++
T Consensus       233 ~~~~s~~~~~li~~~L~~dP~~R~s~~eil~  263 (307)
T d1a06a_         233 WDDISDSAKDFIRHLMEKDPEKRFTCEQALQ  263 (307)
T ss_dssp             TTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             ccCCCHHHHHHHHHHccCCHhHCcCHHHHhc
Confidence            1223356889999999999999999999876

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-44  Score=370.99  Aligned_cols=248  Identities=22%  Similarity=0.347  Sum_probs=193.8

Q ss_pred             hhhhcccccCCCeEEEEEEECC--------CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEec
Q 006019          372 EDFSNVIGSSPIGTVYKGTLSN--------GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEE  442 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~~~--------~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~  442 (664)
                      ..+.+.||+|+||.||+|+...        +..||||++....    ......+|.+|...+.++ +|||||+++|+|.+
T Consensus        15 ~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~----~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~   90 (299)
T d1fgka_          15 LVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDA----TEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ   90 (299)
T ss_dssp             EEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             eEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECccc----ChHHHHHHHHHHHHHHHhcCCCeEEeccccccc
Confidence            3456899999999999998632        3478999886432    234457899999999988 89999999999998


Q ss_pred             CCCceeEEEEEecCCCChhhhhcccC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCe
Q 006019          443 EEPFTRMMVFEYAPNGTLFEHIHIKE--------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAV  508 (664)
Q Consensus       443 ~~~~~~~lV~Ey~~~GsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NI  508 (664)
                      .+  ..++|||||++|+|.++++...              ...+++.++++++.|+|.||+|||+++  ||||||||+||
T Consensus        91 ~~--~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~--ivHrDiKp~Ni  166 (299)
T d1fgka_          91 DG--PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKK--CIHRDLAARNV  166 (299)
T ss_dssp             SS--SCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGE
T ss_pred             CC--eEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhCC--EEeeeecccce
Confidence            76  6799999999999999996442              245899999999999999999999999  99999999999


Q ss_pred             EecCCCceEecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHh-CCCCccCCCCChH
Q 006019          509 HLTEDYAAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVT-GRLPYLVDNGSLE  576 (664)
Q Consensus       509 Lld~~~~~kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~t-G~~P~~~~~~~~~  576 (664)
                      |++.++.+||+|||+++.....           ...+.+||......++.|+|||||||++|||+| |+.||.  +....
T Consensus       167 Ll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~--~~~~~  244 (299)
T d1fgka_         167 LVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYP--GVPVE  244 (299)
T ss_dssp             EECTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST--TCCHH
T ss_pred             eecCCCCeEeccchhhccccccccccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCC--CCCHH
Confidence            9999999999999998866432           234556777777889999999999999999999 788883  33333


Q ss_pred             HHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          577 DWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       577 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                      +....+..+ ...         ..+...+.++.+++.+||+.||++||||.||++.|++++..
T Consensus       245 ~~~~~i~~~-~~~---------~~p~~~~~~l~~li~~cl~~dP~~Rps~~eil~~L~~i~a~  297 (299)
T d1fgka_         245 ELFKLLKEG-HRM---------DKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVAL  297 (299)
T ss_dssp             HHHHHHHTT-CCC---------CCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcC-CCC---------CCCccchHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHhhc
Confidence            333222222 111         12223345789999999999999999999999999998754

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.3e-45  Score=373.13  Aligned_cols=249  Identities=18%  Similarity=0.278  Sum_probs=187.8

Q ss_pred             hhhhcccccCCCeEEEEEEEC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecCC
Q 006019          372 EDFSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEEE  444 (664)
Q Consensus       372 ~~~~~~iG~G~~G~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~  444 (664)
                      ..+.+.||+|+||.||+|++.      +++.||||++.....    ....+.|.+|.+.+.++ +|+|||.+++++.+.+
T Consensus        15 y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~----~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~   90 (299)
T d1ywna1          15 LKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT----HSEHRALMSELKILIHIGHHLNVVNLLGACTKPG   90 (299)
T ss_dssp             EEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----C----HHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTT
T ss_pred             EEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccC----cHHHHHHHHHHHHHHhhcCCCeEEEeeeeeccCC
Confidence            345689999999999999963      246899999864322    33456788898888887 6899999999987654


Q ss_pred             CceeEEEEEecCCCChhhhhcccC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEe
Q 006019          445 PFTRMMVFEYAPNGTLFEHIHIKE--------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHL  510 (664)
Q Consensus       445 ~~~~~lV~Ey~~~GsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILl  510 (664)
                      . ..++|||||++|+|.++++...              ...++|..+..++.||++||+|||+++  |+||||||+||||
T Consensus        91 ~-~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~--ivHrDlKp~NILl  167 (299)
T d1ywna1          91 G-PLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK--CIHRDLAARNILL  167 (299)
T ss_dssp             S-CCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEE
T ss_pred             C-eEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCC--CcCCcCCccceeE
Confidence            3 4689999999999999986432              245899999999999999999999998  9999999999999


Q ss_pred             cCCCceEecccCchhhhhh-----------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhC-CCCccCCCCChHHH
Q 006019          511 TEDYAAKLSDLSFWNEIAM-----------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTG-RLPYLVDNGSLEDW  578 (664)
Q Consensus       511 d~~~~~kl~DfGla~~~~~-----------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG-~~P~~~~~~~~~~~  578 (664)
                      ++++.+||+|||+++....           .+..+.+||......++.++|||||||++|||+|| +.||.....  .+.
T Consensus       168 ~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~--~~~  245 (299)
T d1ywna1         168 SEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI--DEE  245 (299)
T ss_dssp             CGGGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCC--SHH
T ss_pred             CCCCcEEEccCcchhhccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCCH--HHH
Confidence            9999999999999976521           23356678877778899999999999999999996 457743222  222


Q ss_pred             HHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          579 AADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       579 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      ....+.....         ...+..++.++.+++.+||+.||++||||.||++.|+++++
T Consensus       246 ~~~~~~~~~~---------~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~eil~~L~~ilq  296 (299)
T d1ywna1         246 FCRRLKEGTR---------MRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ  296 (299)
T ss_dssp             HHHHHHHTCC---------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCC---------CCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence            2222222111         11223334578999999999999999999999999999875

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-44  Score=364.05  Aligned_cols=244  Identities=18%  Similarity=0.277  Sum_probs=196.7

Q ss_pred             hhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCC-chhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDW-PKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMM  450 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~l  450 (664)
                      ++.+.||+|+||+||+|+.. +|+.||||++........ .....+.|.+|+++|++++|||||++++++.+.+  ..++
T Consensus        13 ~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~--~~~i   90 (293)
T d1jksa_          13 DTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKT--DVIL   90 (293)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EEEE
T ss_pred             EEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC--EEEE
Confidence            45588999999999999974 689999999976543321 1223578999999999999999999999999877  7799


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC----ceEecccCchhh
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY----AAKLSDLSFWNE  526 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~----~~kl~DfGla~~  526 (664)
                      |||||++|+|.+++...  ..+++.....++.|++.||+|||+.+  |+||||||+|||++.++    .+|++|||+++.
T Consensus        91 v~E~~~gg~L~~~i~~~--~~l~~~~~~~~~~qi~~al~yLH~~~--ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~  166 (293)
T d1jksa_          91 ILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHSLQ--IAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHK  166 (293)
T ss_dssp             EEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEESCSSSSSCCEEECCCTTCEE
T ss_pred             EEEcCCCccccchhccc--cccchhHHHHHHHHHHHHHHhhhhcc--eeecccccceEEEecCCCcccceEecchhhhhh
Confidence            99999999999998643  46999999999999999999999999  99999999999999776    499999999876


Q ss_pred             hhh--------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 006019          527 IAM--------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       527 ~~~--------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                      ...        ....+.+||......++.++|||||||++|||+||+.||..  .+..+.................    
T Consensus       167 ~~~~~~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~--~~~~~~~~~i~~~~~~~~~~~~----  240 (293)
T d1jksa_         167 IDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLG--DTKQETLANVSAVNYEFEDEYF----  240 (293)
T ss_dssp             CTTSCBCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHTTCCCCCHHHH----
T ss_pred             cCCCccccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCC--CCHHHHHHHHHhcCCCCCchhc----
Confidence            632        23356788888888899999999999999999999999943  3334443333333211111111    


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                         ...+..+.+++.+||+.||++|||++|+++
T Consensus       241 ---~~~s~~~~~li~~~L~~dP~~R~s~~eil~  270 (293)
T d1jksa_         241 ---SNTSALAKDFIRRLLVKDPKKRMTIQDSLQ  270 (293)
T ss_dssp             ---TTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             ---CCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence               122356889999999999999999999876

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-44  Score=370.45  Aligned_cols=246  Identities=20%  Similarity=0.318  Sum_probs=197.9

Q ss_pred             hhhcccccCCCeEEEEEEEC------CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCc
Q 006019          373 DFSNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF  446 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~------~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  446 (664)
                      .+.+.||+|+||.||+|.+.      ++..||||+++...    .......|.+|++++++++|||||+++|+|...+  
T Consensus        23 ~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~----~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~--   96 (308)
T d1p4oa_          23 TMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA----SMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQ--   96 (308)
T ss_dssp             EEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTS----CHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSS--
T ss_pred             EEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECccc----ChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCC--
Confidence            34588999999999999874      25789999886322    2344567999999999999999999999998777  


Q ss_pred             eeEEEEEecCCCChhhhhccc--------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEe
Q 006019          447 TRMMVFEYAPNGTLFEHIHIK--------ESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKL  518 (664)
Q Consensus       447 ~~~lV~Ey~~~GsL~~~l~~~--------~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl  518 (664)
                      ..++|||||++|+|.++++..        ....++|..+.+|+.++|+||.|||+++  |+||||||+|||+|+++.+||
T Consensus        97 ~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~--ivHrDlk~~NiLld~~~~~Kl  174 (308)
T d1p4oa_          97 PTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANK--FVHRDLAARNCMVAEDFTVKI  174 (308)
T ss_dssp             SCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTT--CBCSCCSGGGEEECTTCCEEE
T ss_pred             ceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCC--eeeceEcCCceeecCCceEEE
Confidence            569999999999999988632        2245799999999999999999999998  999999999999999999999


Q ss_pred             cccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCC-CCccCCCCChHHHHHHHhcCC
Q 006019          519 SDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGR-LPYLVDNGSLEDWAADYLSGV  586 (664)
Q Consensus       519 ~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~-~P~~~~~~~~~~~~~~~~~~~  586 (664)
                      +|||+++.....           ...+.+||......++.++|||||||++|||+||+ .||  .+....++......+.
T Consensus       175 ~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~--~~~~~~~~~~~i~~~~  252 (308)
T d1p4oa_         175 GDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPY--QGLSNEQVLRFVMEGG  252 (308)
T ss_dssp             CCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTT--TTSCHHHHHHHHHTTC
T ss_pred             eecccceeccCCcceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCC--CCCCHHHHHHHHHhCC
Confidence            999999866422           12344566666677899999999999999999985 666  3445555554444321


Q ss_pred             CCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          587 QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       587 ~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                                ....+..++..+.+++.+||+.+|++||||.+|++.|++.++
T Consensus       253 ----------~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~~il~~L~~~~~  294 (308)
T d1p4oa_         253 ----------LLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEME  294 (308)
T ss_dssp             ----------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred             ----------CCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence                      112233344679999999999999999999999999988755

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-44  Score=368.06  Aligned_cols=238  Identities=20%  Similarity=0.272  Sum_probs=195.5

Q ss_pred             hhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      ++.+.||+|+||.||+|+.. +|+.||||++.......  ....+.+.+|+++|++++|||||++++++.+.+  ..++|
T Consensus        11 ~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~--~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~--~~~iv   86 (288)
T d1uu3a_          11 KFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIK--ENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDE--KLYFG   86 (288)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHH--TTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSS--EEEEE
T ss_pred             EEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccC--HHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECC--EEEEE
Confidence            35589999999999999974 68999999987533211  123467999999999999999999999998877  77999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh--
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM--  529 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~--  529 (664)
                      |||+++|+|.+++..  ...+++.....++.|++.||+|||+++  |+||||||+|||+++++.+||+|||+++....  
T Consensus        87 mEy~~gg~L~~~~~~--~~~l~e~~~~~~~~qi~~al~ylH~~~--iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~  162 (288)
T d1uu3a_          87 LSYAKNGELLKYIRK--IGSFDETCTRFYTAEIVSALEYLHGKG--IIHRDLKPENILLNEDMHIQITDFGTAKVLSPES  162 (288)
T ss_dssp             ECCCTTEEHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECTTSCEEECCCTTCEECC---
T ss_pred             EEccCCCCHHHhhhc--cCCCCHHHHHHHHHHHHHHHHhhcccc--EEcCcCCccccccCCCceEEecccccceecccCC
Confidence            999999999998863  356999999999999999999999999  99999999999999999999999999986531  


Q ss_pred             ---------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCC
Q 006019          530 ---------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSF  600 (664)
Q Consensus       530 ---------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  600 (664)
                               ++..+.+||......++.++|||||||++|||+||+.||..  .+..+...........           +
T Consensus       163 ~~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~--~~~~~~~~~i~~~~~~-----------~  229 (288)
T d1uu3a_         163 KQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRA--GNEYLIFQKIIKLEYD-----------F  229 (288)
T ss_dssp             -------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHTTCCC-----------C
T ss_pred             cccccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCC--cCHHHHHHHHHcCCCC-----------C
Confidence                     23456789988888899999999999999999999999943  3444444444433111           1


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          601 DEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       601 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      +.....++.+++.+||+.||++|||++|+.+
T Consensus       230 p~~~s~~~~~li~~~L~~dP~~R~t~~e~~~  260 (288)
T d1uu3a_         230 PEKFFPKARDLVEKLLVLDATKRLGCEEMEG  260 (288)
T ss_dssp             CTTCCHHHHHHHHTTSCSSGGGSTTSGGGTC
T ss_pred             CccCCHHHHHHHHHHccCCHhHCcCHHHHcC
Confidence            2223356889999999999999999998754

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-44  Score=365.48  Aligned_cols=251  Identities=18%  Similarity=0.276  Sum_probs=188.5

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC--ceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP--FTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~--~~~~lV  451 (664)
                      +.+.||+|+||.||+|++ +|..||||++....      .....+..|+..+++++|||||+++|+|.+.+.  ...++|
T Consensus         7 l~~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~~------~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv   79 (303)
T d1vjya_           7 LQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE------ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLV   79 (303)
T ss_dssp             EEEEEECCSSSEEEEEEE-TTEEEEEEEECGGG------HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred             EEEEEeeCCCeEEEEEEE-CCEEEEEEEECccc------hhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEE
Confidence            447899999999999997 57899999885322      112223345556678899999999999986542  246899


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcC------CCCeEEeCcCCCCeEecCCCceEecccCchh
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL------NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN  525 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~------~~~ivHrDLk~~NILld~~~~~kl~DfGla~  525 (664)
                      ||||++|+|.++++.   ..++|..+.+++.++|.||+|||+.      .++|+||||||+|||||+++.+||+|||+++
T Consensus        80 ~Ey~~~g~L~~~l~~---~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~  156 (303)
T d1vjya_          80 SDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV  156 (303)
T ss_dssp             EECCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             EecccCCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCccc
Confidence            999999999999974   3599999999999999999999974      2359999999999999999999999999987


Q ss_pred             hhhhh-------------hhhcccccccCCC------CCCcCCcchhhHHHHHHHHhCCCCccCCCC------------C
Q 006019          526 EIAMA-------------EMAATSKKLSSAP------SASLESNVYNFGVLLFEMVTGRLPYLVDNG------------S  574 (664)
Q Consensus       526 ~~~~~-------------~~~~~~pe~~~~~------~~s~ksDVySfGvvl~El~tG~~P~~~~~~------------~  574 (664)
                      .....             +..+.+||+....      .++.|+|||||||++|||+||..|+.....            .
T Consensus       157 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~  236 (303)
T d1vjya_         157 RHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDP  236 (303)
T ss_dssp             EEETTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSC
T ss_pred             cccCCCcceeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccc
Confidence            65321             2445567765443      257789999999999999999888742110            0


Q ss_pred             hHHHHHHHhcCCCCCccccCCCCCC--CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          575 LEDWAADYLSGVQPLQQFVDPTLSS--FDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                      ..+........     ...+|.+..  .+.+....+.+++.+||+.||++||||.||++.|+++.+.
T Consensus       237 ~~~~~~~~~~~-----~~~~p~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~  298 (303)
T d1vjya_         237 SVEEMRKVVCE-----QKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             CHHHHHHHHTT-----SCCCCCCCGGGGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhc-----cccCCCCCcccCChHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHh
Confidence            11111111111     112222221  1234667799999999999999999999999999998753

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=2.5e-43  Score=368.74  Aligned_cols=241  Identities=20%  Similarity=0.282  Sum_probs=196.3

Q ss_pred             hhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      ++.+.||+|+||.||+|+.. +|..||||++....     ....+.+.+|+++|++++|||||++++++.+.+  ..++|
T Consensus        29 ~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~-----~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~--~~~iv  101 (350)
T d1koaa2          29 DIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPH-----ESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDN--EMVMI  101 (350)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCS-----HHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETT--EEEEE
T ss_pred             EEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccc-----hhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECC--EEEEE
Confidence            45588999999999999964 68999999986432     233567999999999999999999999999877  78999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecC--CCceEecccCchhhhhh
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE--DYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~--~~~~kl~DfGla~~~~~  529 (664)
                      ||||++|+|.+++.. ....+++..+..|+.||+.||+|||+++  ||||||||+|||++.  ++.+||+|||+++....
T Consensus       102 mE~~~gg~L~~~l~~-~~~~l~e~~~~~i~~qi~~aL~ylH~~~--iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~  178 (350)
T d1koaa2         102 YEFMSGGELFEKVAD-EHNKMSEDEAVEYMRQVCKGLCHMHENN--YVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDP  178 (350)
T ss_dssp             ECCCCSCBHHHHHTC-TTSCBCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEESSTTSCCEEECCCTTCEECCT
T ss_pred             EEcCCCCCHHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHHhcC--CeeeeechhHeeeccCCCCeEEEeecchheeccc
Confidence            999999999999853 3456999999999999999999999999  999999999999964  67899999999987642


Q ss_pred             h--------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 006019          530 A--------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  601 (664)
Q Consensus       530 ~--------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  601 (664)
                      .        +..+.+||...+..++.++|||||||++|||+||+.||.  +.+..+....+..........       ..
T Consensus       179 ~~~~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~--~~~~~~~~~~i~~~~~~~~~~-------~~  249 (350)
T d1koaa2         179 KQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFG--GENDDETLRNVKSCDWNMDDS-------AF  249 (350)
T ss_dssp             TSCEEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSC--CSSHHHHHHHHHHTCCCSCCG-------GG
T ss_pred             ccccceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCC--CCCHHHHHHHHHhCCCCCCcc-------cc
Confidence            2        345567888878888999999999999999999999994  334455555444332211111       11


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          602 EEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       602 ~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                      ...++++.+++.+||+.||++|||++|+++.
T Consensus       250 ~~~s~~~~~li~~~L~~dP~~R~t~~eil~h  280 (350)
T d1koaa2         250 SGISEDGKDFIRKLLLADPNTRMTIHQALEH  280 (350)
T ss_dssp             GGCCHHHHHHHHHHCCSSGGGSCCHHHHHHS
T ss_pred             cCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            2233568899999999999999999998763

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-44  Score=368.88  Aligned_cols=255  Identities=20%  Similarity=0.290  Sum_probs=197.8

Q ss_pred             HHHHHhhhhcccccCCCeEEEEEEE------CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEE
Q 006019          367 LEAACEDFSNVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGF  439 (664)
Q Consensus       367 l~~~~~~~~~~iG~G~~G~Vy~g~~------~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~  439 (664)
                      +......+.+.||+|+||.||+|++      .+++.||||++....    ......+|.+|+.+++++ +|||||+++|+
T Consensus        20 ~~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~----~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~   95 (311)
T d1t46a_          20 FPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSA----HLTEREALMSELKVLSYLGNHMNIVNLLGA   95 (311)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             CCHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECccc----CHHHHHHHHHHHHHHHhccCCCCEEEEEEE
Confidence            3333344668999999999999986      246789999986432    234456899999999999 69999999999


Q ss_pred             EecCCCceeEEEEEecCCCChhhhhcccC----------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCc
Q 006019          440 CEEEEPFTRMMVFEYAPNGTLFEHIHIKE----------------SEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYL  503 (664)
Q Consensus       440 ~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~----------------~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDL  503 (664)
                      |.+.+  ..++|||||++|+|.++++...                ...+++..+.+++.||++||+|||+.+  +|||||
T Consensus        96 ~~~~~--~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~--ivHrDL  171 (311)
T d1t46a_          96 CTIGG--PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKN--CIHRDL  171 (311)
T ss_dssp             ECSSS--SCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCC
T ss_pred             EeeCC--EEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCC--eeeccc
Confidence            98877  5699999999999999986432                235899999999999999999999998  999999


Q ss_pred             CCCCeEecCCCceEecccCchhhhhhh-----------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCC
Q 006019          504 NSSAVHLTEDYAAKLSDLSFWNEIAMA-----------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDN  572 (664)
Q Consensus       504 k~~NILld~~~~~kl~DfGla~~~~~~-----------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~  572 (664)
                      ||+|||++.++.+|++|||+++.....           +..+.+||......++.++|||||||++|||+|++.|+....
T Consensus       172 Kp~NIl~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~  251 (311)
T d1t46a_         172 AARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGM  251 (311)
T ss_dssp             SGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC
T ss_pred             ccccccccccCcccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCC
Confidence            999999999999999999999866422           223456777777788999999999999999999544432222


Q ss_pred             CChHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhCC
Q 006019          573 GSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITGI  639 (664)
Q Consensus       573 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~~  639 (664)
                      . ..+.+...+.....         ...+...+.++.+|+.+||+.||++||||.+|+++|++++..
T Consensus       252 ~-~~~~~~~~i~~~~~---------~~~~~~~~~~l~~Li~~cl~~dP~~RPs~~~il~~L~~~i~~  308 (311)
T d1t46a_         252 P-VDSKFYKMIKEGFR---------MLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISE  308 (311)
T ss_dssp             C-SSHHHHHHHHHTCC---------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             C-HHHHHHHHHhcCCC---------CCCcccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhhcc
Confidence            2 22222222222111         011223346789999999999999999999999999987643

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=4.3e-43  Score=367.22  Aligned_cols=240  Identities=16%  Similarity=0.252  Sum_probs=195.0

Q ss_pred             hhhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          373 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      ++.+.||+|+||.||+|+. .+|+.||||++....     ....+.+.+|+++|++++|||||++++++.+.+  ..++|
T Consensus        32 ~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~-----~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~--~~~iv  104 (352)
T d1koba_          32 DILEELGSGAFGVVHRCVEKATGRVFVAKFINTPY-----PLDKYTVKNEISIMNQLHHPKLINLHDAFEDKY--EMVLI  104 (352)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-----HHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSS--EEEEE
T ss_pred             EEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcc-----hhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC--EEEEE
Confidence            3458899999999999996 469999999986432     223467889999999999999999999998877  77999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEec--CCCceEecccCchhhhhh
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT--EDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld--~~~~~kl~DfGla~~~~~  529 (664)
                      ||||++|+|.+++.. ....+++.....|+.+|+.||+|||+++  |+||||||+|||++  .++.+||+|||+++....
T Consensus       105 mE~~~gg~L~~~~~~-~~~~l~e~~~~~i~~qi~~aL~ylH~~~--iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~  181 (352)
T d1koba_         105 LEFLSGGELFDRIAA-EDYKMSEAEVINYMRQACEGLKHMHEHS--IVHLDIKPENIMCETKKASSVKIIDFGLATKLNP  181 (352)
T ss_dssp             EECCCCCBHHHHTTC-TTCCBCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEESSTTCCCEEECCCTTCEECCT
T ss_pred             EEcCCCChHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeecccccccccccccCCCeEEEeecccceecCC
Confidence            999999999988752 3456999999999999999999999999  99999999999998  678999999999987642


Q ss_pred             --------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCC
Q 006019          530 --------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFD  601 (664)
Q Consensus       530 --------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  601 (664)
                              ....+.+||......++.++||||+||++|||+||+.||.  +.+..+....+..........       ..
T Consensus       182 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~--~~~~~~~~~~i~~~~~~~~~~-------~~  252 (352)
T d1koba_         182 DEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFA--GEDDLETLQNVKRCDWEFDED-------AF  252 (352)
T ss_dssp             TSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSC--CSSHHHHHHHHHHCCCCCCSS-------TT
T ss_pred             CCceeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCC--CCCHHHHHHHHHhCCCCCCcc-------cc
Confidence                    2345567888888889999999999999999999999994  333444444444332211111       11


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          602 EEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       602 ~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ...+.++.+|+.+||+.||++|||+.|+++
T Consensus       253 ~~~s~~~~~li~~~L~~dp~~R~s~~eil~  282 (352)
T d1koba_         253 SSVSPEAKDFIKNLLQKEPRKRLTVHDALE  282 (352)
T ss_dssp             TTSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             cCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            223356889999999999999999999976

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3.9e-43  Score=356.80  Aligned_cols=250  Identities=20%  Similarity=0.267  Sum_probs=201.5

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC--ceeEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP--FTRMM  450 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~--~~~~l  450 (664)
                      +.+.||+|+||.||+|+. .+|+.||||++......+  ....+.|.+|++++++++|||||++++++...+.  ...++
T Consensus        11 i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~--~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~~~l   88 (277)
T d1o6ya_          11 LGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARD--PSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYI   88 (277)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTC--HHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEEEEE
T ss_pred             EeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccC--HHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCceEEE
Confidence            458899999999999996 478999999997544333  3455689999999999999999999999876542  23689


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh-
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM-  529 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~-  529 (664)
                      ||||+++|+|.+++..  ...+++.....|+.|++.||+|||+.+  |+||||||+|||++.++..+++|||.++.... 
T Consensus        89 vmE~~~g~~L~~~~~~--~~~l~~~~~~~i~~qi~~al~~lH~~~--iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~~~  164 (277)
T d1o6ya_          89 VMEYVDGVTLRDIVHT--EGPMTPKRAIEVIADACQALNFSHQNG--IIHRDVKPANIMISATNAVKVMDFGIARAIADS  164 (277)
T ss_dssp             EEECCCEEEHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEETTSCEEECCCTTCEECC--
T ss_pred             EEECCCCCEehhhhcc--cCCCCHHHHHHHHHHHHHHHHHHHhCC--ccCccccCcccccCccccceeehhhhhhhhccc
Confidence            9999999999998863  346999999999999999999999999  99999999999999999999999998764421 


Q ss_pred             -----------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 006019          530 -----------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       530 -----------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                                 ++..+.+||......++.++|||||||++|||+||+.||.  .....+.....+...........+   
T Consensus       165 ~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~--~~~~~~~~~~~~~~~~~~~~~~~~---  239 (277)
T d1o6ya_         165 GNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFT--GDSPVSVAYQHVREDPIPPSARHE---  239 (277)
T ss_dssp             --------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCC--CSSHHHHHHHHHHCCCCCGGGTSS---
T ss_pred             cccccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCC--CcCHHHHHHHHHhcCCCCCchhcc---
Confidence                       2345678898888889999999999999999999999994  334444444444432222111111   


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCC-CHHHHHHHHHhhhC
Q 006019          599 SFDEEQLETLGELIKSCVRADPEKRP-TMRDIAAILREITG  638 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~RP-s~~ev~~~L~~i~~  638 (664)
                          ..+.++.+++.+||+.||++|| +++++.+.|.++.+
T Consensus       240 ----~~s~~l~~li~~~L~~dp~~R~~sa~~l~~~l~r~~n  276 (277)
T d1o6ya_         240 ----GLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHN  276 (277)
T ss_dssp             ----SCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHC
T ss_pred             ----CCCHHHHHHHHHHccCCHhHCHhHHHHHHHHHHHHhC
Confidence                2235688999999999999999 89999999988753

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=1.2e-42  Score=352.01  Aligned_cols=243  Identities=21%  Similarity=0.314  Sum_probs=192.4

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCc----hhHHHHHHHHHHHHhccC-CCcccceEEEEecCCCce
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWP----KNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFT  447 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~----~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~  447 (664)
                      +.+.||+|+||+||+|+. .+|+.+|||++.........    ....+.+.+|+++|++++ |||||++++++.+.+  .
T Consensus         7 ~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~--~   84 (277)
T d1phka_           7 PKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNT--F   84 (277)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECSS--E
T ss_pred             EceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccCc--c
Confidence            458899999999999996 47899999999765433222    223456889999999997 999999999999877  7


Q ss_pred             eEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhh
Q 006019          448 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~  527 (664)
                      .++|||||++|+|.++++.  ...+++.++..++.||++||+|||+++  |+||||||+|||++.++.+||+|||+++..
T Consensus        85 ~~ivmE~~~~g~L~~~l~~--~~~l~e~~~~~~~~qi~~al~~lH~~~--ivHrDlkp~Nill~~~~~~kl~DFG~a~~~  160 (277)
T d1phka_          85 FFLVFDLMKKGELFDYLTE--KVTLSEKETRKIMRALLEVICALHKLN--IVHRDLKPENILLDDDMNIKLTDFGFSCQL  160 (277)
T ss_dssp             EEEEEECCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             eEEEEEcCCCchHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHcC--CcccccccceEEEcCCCCeEEccchheeEc
Confidence            8999999999999999964  346999999999999999999999999  999999999999999999999999999866


Q ss_pred             hhh--------hhhccccccc------CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCcccc
Q 006019          528 AMA--------EMAATSKKLS------SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFV  593 (664)
Q Consensus       528 ~~~--------~~~~~~pe~~------~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (664)
                      ...        +..+.+||..      ....++.++||||+||++|||+||+.||..  .+..+.......+....   .
T Consensus       161 ~~~~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~--~~~~~~~~~i~~~~~~~---~  235 (277)
T d1phka_         161 DPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWH--RKQMLMLRMIMSGNYQF---G  235 (277)
T ss_dssp             CTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHTCCCC---C
T ss_pred             cCCCceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCC--CCHHHHHHHHHhCCCCC---C
Confidence            432        2233455543      234568899999999999999999999953  33333333333332111   1


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          594 DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       594 d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .+    .....+.++.+++.+||+.||++||++.||++
T Consensus       236 ~~----~~~~~s~~~~~li~~~L~~~p~~R~s~~eil~  269 (277)
T d1phka_         236 SP----EWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA  269 (277)
T ss_dssp             TT----TGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             Cc----ccccCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence            11    11233457899999999999999999998865

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-43  Score=360.49  Aligned_cols=264  Identities=17%  Similarity=0.182  Sum_probs=190.0

Q ss_pred             cccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      ++||+|+||+||+|+.. +|+.||||++.............+.+.+|+++|++++|||||++++++...+  ..++||||
T Consensus         4 ~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~--~~~ivmE~   81 (299)
T d1ua2a_           4 DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKS--NISLVFDF   81 (299)
T ss_dssp             EEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTT--CCEEEEEC
T ss_pred             eEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCC--ceeehhhh
Confidence            57999999999999964 6899999998755433222223457899999999999999999999999877  67999999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh-----
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM-----  529 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~-----  529 (664)
                      +++|++..+..  ....+++..+..++.||+.||+|||+++  |+||||||+|||+++++.+||+|||+++....     
T Consensus        82 ~~~~~~~~~~~--~~~~l~~~~~~~~~~qil~aL~~lH~~~--iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~~~  157 (299)
T d1ua2a_          82 METDLEVIIKD--NSLVLTPSHIKAYMLMTLQGLEYLHQHW--ILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAY  157 (299)
T ss_dssp             CSEEHHHHHTT--CCSSCCSSHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCCC
T ss_pred             hcchHHhhhhh--cccCCCHHHHHHHHHHHHHHHHHhhccc--eecccCCcceEEecCCCccccccCccccccCCCcccc
Confidence            99987776653  4566888899999999999999999999  99999999999999999999999999976642     


Q ss_pred             ----hhhhcccccccC-CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcC-----CCCCcccc------
Q 006019          530 ----AEMAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG-----VQPLQQFV------  593 (664)
Q Consensus       530 ----~~~~~~~pe~~~-~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~-----~~~~~~~~------  593 (664)
                          .+..+.+||... ...++.++|||||||++|||+||+.||...  ...+....+...     ........      
T Consensus       158 ~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~--~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~  235 (299)
T d1ua2a_         158 THQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGD--SDLDQLTRIFETLGTPTEEQWPDMCSLPDYV  235 (299)
T ss_dssp             CCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHHHCCCCTTTSSSTTSSTTCC
T ss_pred             cceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCC--CHHHHHHHHHHhcCCCChhhccchhccchhh
Confidence                123456777654 455799999999999999999999999432  222222222110     00000000      


Q ss_pred             -CCCCCCCC-----HHHHHHHHHHHHHhccCCCCCCCCHHHHHH--HHHhhhCCCCCCCCCC
Q 006019          594 -DPTLSSFD-----EEQLETLGELIKSCVRADPEKRPTMRDIAA--ILREITGITPDGAIPK  647 (664)
Q Consensus       594 -d~~~~~~~-----~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~--~L~~i~~~~~~~~~~~  647 (664)
                       -......+     .....++.+|+.+||+.||++|||++|+++  .|++.....|...+|+
T Consensus       236 ~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~dP~~R~sa~e~L~Hp~f~~~p~p~~~~~~p~  297 (299)
T d1ua2a_         236 TFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMKYFSNRPGPTPGCQLPR  297 (299)
T ss_dssp             CCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTSGGGTSSSCCCCSSSSCC
T ss_pred             hhccCCCCChHHhcccCCHHHHHHHHHHccCChhhCcCHHHHhCCHhhCCCCCCCCCCCCCC
Confidence             00001111     122357899999999999999999999886  3443333333333443

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-42  Score=358.02  Aligned_cols=237  Identities=18%  Similarity=0.249  Sum_probs=195.1

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||+||+|+.. +|+.||||++.......  ....+.+.+|+.+|++++|||||++++++.+.+  ..++||
T Consensus         8 i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~--~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~--~~~ivm   83 (316)
T d1fota_           8 ILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVR--LKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQ--QIFMIM   83 (316)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHH--TTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSS--EEEEEE
T ss_pred             EEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccC--HHHHHHHHHHHHHHHhccCcChhheeeeEeeCC--eeeeEe
Confidence            4488999999999999974 68999999987533211  123467999999999999999999999999877  789999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      |||++|+|..++.  ....+++.....++.|++.||+|||+++  |+||||||+|||++.++.+||+|||+++....   
T Consensus        84 E~~~gg~l~~~~~--~~~~~~~~~~~~~~~qi~~al~~lH~~~--iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~~~  159 (316)
T d1fota_          84 DYIEGGELFSLLR--KSQRFPNPVAKFYAAEVCLALEYLHSKD--IIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTY  159 (316)
T ss_dssp             CCCCSCBHHHHHH--HTSSCCHHHHHHHHHHHHHHHHHHHTTT--EECCCCCGGGEEECTTSCEEECCCSSCEECSSCBC
T ss_pred             eecCCcccccccc--ccccccccHHHHHHHHHHHhhhhhccCc--EEccccCchheeEcCCCCEEEecCccceEeccccc
Confidence            9999999998886  3456888888999999999999999999  99999999999999999999999999987642   


Q ss_pred             ---hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHH
Q 006019          530 ---AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE  606 (664)
Q Consensus       530 ---~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  606 (664)
                         ++..+.+||...+..++.++||||+||++|||+||+.||.  +.+..+...........           .++..+.
T Consensus       160 ~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~--~~~~~~~~~~i~~~~~~-----------~p~~~s~  226 (316)
T d1fota_         160 TLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFY--DSNTMKTYEKILNAELR-----------FPPFFNE  226 (316)
T ss_dssp             CCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTC--CSSHHHHHHHHHHCCCC-----------CCTTSCH
T ss_pred             cccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCC--CcCHHHHHHHHHcCCCC-----------CCCCCCH
Confidence               2345678998888889999999999999999999999994  33444544444443211           1122235


Q ss_pred             HHHHHHHHhccCCCCCCC-----CHHHHHH
Q 006019          607 TLGELIKSCVRADPEKRP-----TMRDIAA  631 (664)
Q Consensus       607 ~l~~l~~~Cl~~~P~~RP-----s~~ev~~  631 (664)
                      ++.+++.+||+.||.+|+     +++++++
T Consensus       227 ~~~~li~~~L~~dp~~R~~~~r~t~~~il~  256 (316)
T d1fota_         227 DVKDLLSRLITRDLSQRLGNLQNGTEDVKN  256 (316)
T ss_dssp             HHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred             HHHHHHHHHhhhCHHhccccchhhHHHHHc
Confidence            688999999999999996     8888875

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-42  Score=357.07  Aligned_cols=238  Identities=15%  Similarity=0.222  Sum_probs=191.6

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|... +++.||||.+....      .....+.+|+++|++++|||||++++++.+.+  ..++||
T Consensus         9 i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~------~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~--~~~lvm   80 (321)
T d1tkia_           9 IAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG------TDQVLVKKEISILNIARHRNILHLHESFESME--ELVMIF   80 (321)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT------HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             EEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCc------ccHHHHHHHHHHHHhCCCCCCCeEEEEEEECC--EEEEEE
Confidence            4588999999999999975 68899999986432      22456889999999999999999999998877  789999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCC--CceEecccCchhhhhhh
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED--YAAKLSDLSFWNEIAMA  530 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~--~~~kl~DfGla~~~~~~  530 (664)
                      |||++|+|.+++.. ....+++.....|+.||+.||+|||+.+  |+||||||+|||++.+  ..+||+|||+++.....
T Consensus        81 E~~~gg~L~~~i~~-~~~~l~e~~~~~i~~qi~~al~yLH~~~--iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~  157 (321)
T d1tkia_          81 EFISGLDIFERINT-SAFELNEREIVSYVHQVCEALQFLHSHN--IGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPG  157 (321)
T ss_dssp             CCCCCCBHHHHHTS-SSCCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEESSSSCCCEEECCCTTCEECCTT
T ss_pred             ecCCCCcHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHcC--CCcccccccceeecCCCceEEEEcccchhhccccC
Confidence            99999999999863 2346999999999999999999999999  9999999999999854  58999999998866422


Q ss_pred             --------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          531 --------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       531 --------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                              ...+.+||......++.++||||+||++|||+||+.||..  ....+....+............+       
T Consensus       158 ~~~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~--~~~~~~~~~i~~~~~~~~~~~~~-------  228 (321)
T d1tkia_         158 DNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLA--ETNQQIIENIMNAEYTFDEEAFK-------  228 (321)
T ss_dssp             CEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHHTCCCCCHHHHT-------
T ss_pred             CcccccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCC--CCHHHHHHHHHhCCCCCChhhcc-------
Confidence                    2334456666677789999999999999999999999943  33444444444432222111111       


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          603 EQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ..+.++.+++.+|++.||++|||+.|+++
T Consensus       229 ~~s~~~~~li~~~L~~dp~~R~s~~eil~  257 (321)
T d1tkia_         229 EISIEAMDFVDRLLVKERKSRMTASEALQ  257 (321)
T ss_dssp             TSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             CCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            12346889999999999999999999987

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-42  Score=357.06  Aligned_cols=237  Identities=17%  Similarity=0.219  Sum_probs=195.1

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+. .+|+.||||++.......  ....+.+.+|+++|++++|||||++++++.+.+  ..++||
T Consensus         9 ~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~--~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~--~~~iv~   84 (337)
T d1o6la_           9 YLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIA--KDEVAHTVTESRVLQNTRHPFLTALKYAFQTHD--RLCFVM   84 (337)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHH--TTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             EEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccC--HHHHHHHHHHHHHHHhCCCCCEEEEEeeecccc--ccccce
Confidence            448999999999999996 468999999997543211  123467899999999999999999999999877  789999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      |||++|+|.+++..  ...++......++.|++.||+|||+.+  |+||||||+|||+++++.+||+|||+++....   
T Consensus        85 ey~~gg~L~~~~~~--~~~~~e~~~~~~~~qil~al~ylH~~~--iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~~  160 (337)
T d1o6la_          85 EYANGGELFFHLSR--ERVFTEERARFYGAEIVSALEYLHSRD--VVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA  160 (337)
T ss_dssp             ECCTTCBHHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTC
T ss_pred             eccCCCchhhhhhc--ccCCcHHHHHHHHHHHhhhhhhhhhcC--ccccccCHHHeEecCCCCEEEeecccccccccCCc
Confidence            99999999999864  346888999999999999999999999  99999999999999999999999999986532   


Q ss_pred             ------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 006019          530 ------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEE  603 (664)
Q Consensus       530 ------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  603 (664)
                            ++..+.+||......++.++||||+||++|||+||+.||..  .+..+.......+.-.           ++..
T Consensus       161 ~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~--~~~~~~~~~i~~~~~~-----------~p~~  227 (337)
T d1o6la_         161 TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYN--QDHERLFELILMEEIR-----------FPRT  227 (337)
T ss_dssp             CBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCC-----------CCTT
T ss_pred             ccccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCC--cCHHHHHHHHhcCCCC-----------CCcc
Confidence                  13456789998888899999999999999999999999943  3444444444433211           1222


Q ss_pred             HHHHHHHHHHHhccCCCCCCCC-----HHHHHH
Q 006019          604 QLETLGELIKSCVRADPEKRPT-----MRDIAA  631 (664)
Q Consensus       604 ~~~~l~~l~~~Cl~~~P~~RPs-----~~ev~~  631 (664)
                      .+.++.+++.+||+.||++||+     +.|+++
T Consensus       228 ~s~~~~dli~~~L~~dP~~R~~~~~~~~~eil~  260 (337)
T d1o6la_         228 LSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME  260 (337)
T ss_dssp             SCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             CCHHHHHHHHhhccCCchhhcccccccHHHHHc
Confidence            3456889999999999999995     777765

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.1e-42  Score=360.36  Aligned_cols=241  Identities=15%  Similarity=0.205  Sum_probs=187.1

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCC-CchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKD-WPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~-~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.++||+|+||.||+|+.. +|+.||||++....... ...........|+++++.++|||||++++++.+.+  ..++|
T Consensus         8 i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~--~~~iv   85 (364)
T d1omwa3           8 VHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPD--KLSFI   85 (364)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSS--EEEEE
T ss_pred             eeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECC--EEEEE
Confidence            4489999999999999975 68999999986433211 00111223344577788889999999999998877  78999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh--
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM--  529 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~--  529 (664)
                      ||||++|+|.+++..  ...+++.....++.+|+.||+|||+++  |+||||||+|||+++++.+||+|||+++....  
T Consensus        86 mE~~~gg~L~~~l~~--~~~~~e~~~~~~~~qi~~aL~ylH~~~--iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~~~  161 (364)
T d1omwa3          86 LDLMNGGDLHYHLSQ--HGVFSEADMRFYAAEIILGLEHMHNRF--VVYRDLKPANILLDEHGHVRISDLGLACDFSKKK  161 (364)
T ss_dssp             ECCCCSCBHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECSSSCEEECCCTTCEECSSSC
T ss_pred             EEecCCCcHHHHHHh--cccccHHHHHHHHHHHHHHHHHHHHCC--ccceeeccceeEEcCCCcEEEeeeceeeecCCCc
Confidence            999999999999864  356889999999999999999999999  99999999999999999999999999986632  


Q ss_pred             -----hhhhcccccccC-CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCC-hHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          530 -----AEMAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGS-LEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       530 -----~~~~~~~pe~~~-~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                           ++..+.+||... ...++.++|||||||++|||+||+.||...... .....+......           ...+.
T Consensus       162 ~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~-----------~~~~~  230 (364)
T d1omwa3         162 PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMA-----------VELPD  230 (364)
T ss_dssp             CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHHHHHHHSSSCC-----------CCCCS
T ss_pred             ccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCC-----------CCCCC
Confidence                 345667888765 456899999999999999999999999644332 222222211110           01122


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCC-----HHHHHH
Q 006019          603 EQLETLGELIKSCVRADPEKRPT-----MRDIAA  631 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs-----~~ev~~  631 (664)
                      ..+.++.+++.+||+.||++||+     ++|+++
T Consensus       231 ~~s~~~~~li~~~L~~dP~~R~t~~~~~a~eil~  264 (364)
T d1omwa3         231 SFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE  264 (364)
T ss_dssp             SSCHHHHHHHHHHTCSSTTTSTTTSSSTHHHHHT
T ss_pred             CCCHHHHHHHHHHcccCHHHhCCCcccCHHHHHc
Confidence            23356899999999999999999     577764

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-41  Score=355.73  Aligned_cols=237  Identities=18%  Similarity=0.237  Sum_probs=194.9

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVF  452 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~  452 (664)
                      +.+.||+|+||.||+|+.. +|+.||||++.......  ....+.+.+|+++|++++|||||++++++...+  ..++|+
T Consensus        45 i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~--~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~--~~~~v~  120 (350)
T d1rdqe_          45 RIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVK--LKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNS--NLYMVM  120 (350)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHH--TTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             EEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccC--HHHHHHHHHHHHHHHHcCCCcEeeccccccccc--cccccc
Confidence            3478999999999999974 69999999986533211  123467899999999999999999999998877  779999


Q ss_pred             EecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh---
Q 006019          453 EYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---  529 (664)
Q Consensus       453 Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~---  529 (664)
                      ||+.+|+|.+++...  ..+++.....++.||+.||.|||+++  ||||||||+|||++.++.+||+|||+++....   
T Consensus       121 e~~~~g~l~~~l~~~--~~l~e~~~~~i~~qi~~aL~yLH~~~--iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~~~  196 (350)
T d1rdqe_         121 EYVAGGEMFSHLRRI--GRFSEPHARFYAAQIVLTFEYLHSLD--LIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTW  196 (350)
T ss_dssp             ECCTTCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTSCEEECCCTTCEECSSCBC
T ss_pred             ccccccchhhhHhhc--CCCCHHHHHHHHHHHHHHHHHHHhCC--EecCcCCHHHcccCCCCCEEeeeceeeeecccccc
Confidence            999999999998643  46999999999999999999999999  99999999999999999999999999987642   


Q ss_pred             ---hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCHHHHH
Q 006019          530 ---AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLE  606 (664)
Q Consensus       530 ---~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  606 (664)
                         +...+.+||......++.++|||||||++|||+||+.||..  .+..+...........           .+...+.
T Consensus       197 ~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~--~~~~~~~~~i~~~~~~-----------~p~~~s~  263 (350)
T d1rdqe_         197 TLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFA--DQPIQIYEKIVSGKVR-----------FPSHFSS  263 (350)
T ss_dssp             CCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCC-----------CCTTCCH
T ss_pred             cccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCC--cCHHHHHHHHhcCCCC-----------CCccCCH
Confidence               23456789988888899999999999999999999999943  3444444444433211           1122335


Q ss_pred             HHHHHHHHhccCCCCCCC-----CHHHHHH
Q 006019          607 TLGELIKSCVRADPEKRP-----TMRDIAA  631 (664)
Q Consensus       607 ~l~~l~~~Cl~~~P~~RP-----s~~ev~~  631 (664)
                      ++.+++.+||+.||.+|+     +++|+++
T Consensus       264 ~~~~li~~~L~~dP~kR~~~~r~t~~ell~  293 (350)
T d1rdqe_         264 DLKDLLRNLLQVDLTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             HHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred             HHHHHHHHHhhhCHHhccccccccHHHHHc
Confidence            688999999999999994     8898875

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-41  Score=349.60  Aligned_cols=252  Identities=18%  Similarity=0.254  Sum_probs=186.7

Q ss_pred             hcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||+||+|+. .+|+.||||++......   ....+++.+|+++|++++|||||++++++.+.+  ..++|||
T Consensus         7 ~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~---~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~--~~~iv~e   81 (298)
T d1gz8a_           7 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTET---EGVPSTAIREISLLKELNHPNIVKLLDVIHTEN--KLYLVFE   81 (298)
T ss_dssp             EEEEEECSSSEEEEEEETTTCCEEEEEEEC----------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETT--EEEEEEE
T ss_pred             ccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcC---hHHHHHHHHHHHHHHhCCCCcEEEecccccccc--ceeEEEe
Confidence            37899999999999996 56899999999654322   123467999999999999999999999999877  7899999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      |+.+ ++.+++.......+++..+..++.|++.||+|||+++  ||||||||+|||++.++.+||+|||+++.....   
T Consensus        82 ~~~~-~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~~--IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~~~  158 (298)
T d1gz8a_          82 FLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHR--VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRT  158 (298)
T ss_dssp             CCSE-EHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCSBC
T ss_pred             ecCC-chhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcCC--EEccccCchheeecccCcceeccCCcceeccCCccc
Confidence            9975 5555555455677999999999999999999999999  999999999999999999999999999876421   


Q ss_pred             ------hhhcccccccC-CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCC-----Ccccc-C---
Q 006019          531 ------EMAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP-----LQQFV-D---  594 (664)
Q Consensus       531 ------~~~~~~pe~~~-~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~-----~~~~~-d---  594 (664)
                            ...+.+||... ....+.++|||||||++|||+||+.||...  +..+...........     ..... .   
T Consensus       159 ~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  236 (298)
T d1gz8a_         159 YTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGD--SEIDQLFRIFRTLGTPDEVVWPGVTSMPDY  236 (298)
T ss_dssp             TTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCTTTSTTGGGSTTC
T ss_pred             ceeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCC--CHHHHHHHHHHhcCCCchhhcccccccccc
Confidence                  22334566443 344688999999999999999999999532  222222221110000     00000 0   


Q ss_pred             -CCC---CCC-----CHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH--HHhh
Q 006019          595 -PTL---SSF-----DEEQLETLGELIKSCVRADPEKRPTMRDIAAI--LREI  636 (664)
Q Consensus       595 -~~~---~~~-----~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~--L~~i  636 (664)
                       ...   ...     ......++.+++.+|++.||++|||+.|+++.  ++++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~H~ff~~~  289 (298)
T d1gz8a_         237 KPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDV  289 (298)
T ss_dssp             CTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGTTC
T ss_pred             ccccccccccchhhhccCCCHHHHHHHHHHccCChhHCcCHHHHhCCHhhccC
Confidence             000   000     01223568899999999999999999999874  4444

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-42  Score=354.50  Aligned_cols=237  Identities=19%  Similarity=0.250  Sum_probs=190.5

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHh-ccCCCcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLS-KVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~-~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.+.||+|+||+||+|+.. +++.||||++.......  ....+.+..|..++. .++|||||++++++.+.+  ..++|
T Consensus         6 i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~--~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~--~~yiv   81 (320)
T d1xjda_           6 LHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLM--DDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKE--NLFFV   81 (320)
T ss_dssp             EEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHH--TTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSS--EEEEE
T ss_pred             EeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccC--hHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCC--ceeEE
Confidence            4589999999999999975 68999999997532111  112345677777665 689999999999999887  78999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh--
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM--  529 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~--  529 (664)
                      ||||++|+|.++++.  ...++......++.+|+.||+|||+++  |+||||||+|||+++++.+||+|||+++....  
T Consensus        82 mEy~~~g~L~~~i~~--~~~~~e~~~~~~~~qi~~al~ylH~~~--iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~~~  157 (320)
T d1xjda_          82 MEYLNGGDLMYHIQS--CHKFDLSRATFYAAEIILGLQFLHSKG--IVYRDLKLDNILLDKDGHIKIADFGMCKENMLGD  157 (320)
T ss_dssp             EECCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTT
T ss_pred             EeecCCCcHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhCC--eeeccCcccceeecCCCceeccccchhhhccccc
Confidence            999999999999964  346889999999999999999999999  99999999999999999999999999985531  


Q ss_pred             -------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCCCCCH
Q 006019          530 -------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE  602 (664)
Q Consensus       530 -------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  602 (664)
                             ++..+.+||......++.++|||||||++|||+||+.||.  +.+..+.......+...           ++.
T Consensus       158 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~--~~~~~~~~~~i~~~~~~-----------~p~  224 (320)
T d1xjda_         158 AKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFH--GQDEEELFHSIRMDNPF-----------YPR  224 (320)
T ss_dssp             CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSC--CSSHHHHHHHHHHCCCC-----------CCT
T ss_pred             ccccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCC--CCCHHHHHHHHHcCCCC-----------CCc
Confidence                   2345668888888889999999999999999999999994  33444444444332111           122


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHH-HHHH
Q 006019          603 EQLETLGELIKSCVRADPEKRPTMR-DIAA  631 (664)
Q Consensus       603 ~~~~~l~~l~~~Cl~~~P~~RPs~~-ev~~  631 (664)
                      ..+.++.+++.+||+.||++||++. ++++
T Consensus       225 ~~s~~~~dli~~~L~~dP~~R~s~~~~l~~  254 (320)
T d1xjda_         225 WLEKEAKDLLVKLFVREPEKRLGVRGDIRQ  254 (320)
T ss_dssp             TSCHHHHHHHHHHSCSSGGGSBTTBSCGGG
T ss_pred             cCCHHHHHHHHHhcccCCCCCcCHHHHHHh
Confidence            2335689999999999999999996 6753

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-41  Score=351.54  Aligned_cols=237  Identities=16%  Similarity=0.239  Sum_probs=184.2

Q ss_pred             cccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc-CCCcccceEEEEecC--CCceeEEE
Q 006019          376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV-NHKNFVNLIGFCEEE--EPFTRMMV  451 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~--~~~~~~lV  451 (664)
                      +.||+|+||.||+|+. .+++.||||++..          ...+.+|++++.++ +|||||++++++.+.  .....++|
T Consensus        18 ~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~----------~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~~iv   87 (335)
T d2ozaa1          18 QVLGLGINGKVLQIFNKRTQEKFALKMLQD----------CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIV   87 (335)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEC----------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEE
T ss_pred             EEeeeccCeEEEEEEECCCCCEEEEEEECC----------cHHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEEEEE
Confidence            5699999999999996 5689999999852          13577899987655 899999999998642  22257999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecC---CCceEecccCchhhhh
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE---DYAAKLSDLSFWNEIA  528 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~---~~~~kl~DfGla~~~~  528 (664)
                      ||||++|+|.+++.......+++.....|+.|++.||+|||+.+  |+||||||+|||+++   ++.+||+|||+++...
T Consensus        88 mEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~--iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~  165 (335)
T d2ozaa1          88 MECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSIN--IAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT  165 (335)
T ss_dssp             EECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEESCSSTTCCEEECCCTTCEECC
T ss_pred             EECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHcC--Cccccccccccccccccccccccccccceeeecc
Confidence            99999999999997555567999999999999999999999999  999999999999985   4679999999998653


Q ss_pred             h--------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCC-hHHHHHHHhcCCCCCccccCCCCC-
Q 006019          529 M--------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGS-LEDWAADYLSGVQPLQQFVDPTLS-  598 (664)
Q Consensus       529 ~--------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~-  598 (664)
                      .        ....+.+||......++.++|||||||++|||+||+.||...... ...........       ...... 
T Consensus       166 ~~~~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~~~~~~~~i~~-------~~~~~~~  238 (335)
T d2ozaa1         166 SHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRM-------GQYEFPN  238 (335)
T ss_dssp             CCCCCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC--------CCCS-------CSSSCCT
T ss_pred             CCCccccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHHHHHHHHHHhc-------CCCCCCC
Confidence            2        234556788887778899999999999999999999999643321 11111100000       000011 


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ......+.++.+++.+||+.||++|||+.|+++
T Consensus       239 ~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~  271 (335)
T d2ozaa1         239 PEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN  271 (335)
T ss_dssp             THHHHSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             cccccCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence            011234567899999999999999999999987

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=8.1e-41  Score=341.34  Aligned_cols=246  Identities=17%  Similarity=0.218  Sum_probs=187.1

Q ss_pred             hcccccCCCeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEEe
Q 006019          375 SNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEY  454 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~Ey  454 (664)
                      .+.||+|+||+||+|+.++|+.||||++......   ....+.|.+|+.+|++++|||||++++++...+  ..++++||
T Consensus         7 ~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~---~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~--~~~i~~e~   81 (286)
T d1ob3a_           7 LEKIGEGTYGVVYKAQNNYGETFALKKIRLEKED---EGIPSTTIREISILKELKHSNIVKLYDVIHTKK--RLVLVFEH   81 (286)
T ss_dssp             EEEEEEETTEEEEEEEETTSCEEEEEEECCSSGG---GCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSS--CEEEEEEC
T ss_pred             ccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcC---hHHHHHHHHHHHHHHhCCCCcEEeeeeecccCC--ceeEEEEe
Confidence            4789999999999999999999999999654322   223467999999999999999999999999877  67999999


Q ss_pred             cCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh----
Q 006019          455 APNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA----  530 (664)
Q Consensus       455 ~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~----  530 (664)
                      +.++.+..+..  ....++......|+.||+.||+|||+.+  ||||||||+|||++.++.+|++|||.+......    
T Consensus        82 ~~~~~~~~~~~--~~~~l~~~~~~~i~~qi~~~L~~LH~~~--IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~~~  157 (286)
T d1ob3a_          82 LDQDLKKLLDV--CEGGLESVTAKSFLLQLLNGIAYCHDRR--VLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKY  157 (286)
T ss_dssp             CSEEHHHHHHT--STTCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEECTTSCEEECCTTHHHHHCC-----
T ss_pred             ehhhhHHHHHh--hcCCcchhhhHHHHHHHHHHHHHhccCc--EEecCCCCceeeEcCCCCEEecccccceecccCcccc
Confidence            98877766654  4467999999999999999999999998  999999999999999999999999998876422    


Q ss_pred             -----hhhcccccccC-CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcC--C---CCCc---cc--cC
Q 006019          531 -----EMAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSG--V---QPLQ---QF--VD  594 (664)
Q Consensus       531 -----~~~~~~pe~~~-~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~--~---~~~~---~~--~d  594 (664)
                           ...+.+||... ...++.++|||||||++|||+||+.||...  +..+........  .   ....   ..  .+
T Consensus       158 ~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  235 (286)
T d1ob3a_         158 THEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGV--SEADQLMRIFRILGTPNSKNWPNVTELPKYD  235 (286)
T ss_dssp             ----CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCTTTSTTGGGSTTCC
T ss_pred             ceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCC--CHHHHHHHHHHhhCCCChhhccchhhhhhcc
Confidence                 11234455443 455789999999999999999999999432  222222221110  0   0000   00  00


Q ss_pred             CCC--------CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          595 PTL--------SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       595 ~~~--------~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      ...        ..........+.+++.+|++.||++|||++|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~ell~  280 (286)
T d1ob3a_         236 PNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE  280 (286)
T ss_dssp             TTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             cccccccCcchhhhcccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            000        0111223456889999999999999999999874

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-41  Score=342.08  Aligned_cols=234  Identities=20%  Similarity=0.349  Sum_probs=182.9

Q ss_pred             hhhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCch-hHHHHHHHHHHHHhccC--CCcccceEEEEecCCCcee
Q 006019          373 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPK-NLEVQFRKKIDTLSKVN--HKNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~-~~~~~f~~E~~~l~~l~--H~niv~l~g~~~~~~~~~~  448 (664)
                      .+.+.||+|+||.||+|+. .+|+.||||++......+... ....++.+|+++|++++  |||||++++++.+.+  ..
T Consensus         7 ~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~--~~   84 (273)
T d1xwsa_           7 QVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPD--SF   84 (273)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSS--EE
T ss_pred             EEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCC--eE
Confidence            3458899999999999996 468999999997544332111 11234778999999997  899999999998877  77


Q ss_pred             EEEEEecCC-CChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCC-CceEecccCchhh
Q 006019          449 MMVFEYAPN-GTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTED-YAAKLSDLSFWNE  526 (664)
Q Consensus       449 ~lV~Ey~~~-GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~-~~~kl~DfGla~~  526 (664)
                      ++||||+.+ +++.+++..  ...+++.....++.|++.||+|||+++  |+||||||+|||++.+ +.+||+|||+++.
T Consensus        85 ~lv~e~~~~~~~l~~~~~~--~~~l~e~~~~~~~~qi~~al~~lH~~~--iiHrDiKp~NIll~~~~~~vkl~DFG~a~~  160 (273)
T d1xwsa_          85 VLILERPEPVQDLFDFITE--RGALQEELARSFFWQVLEAVRHCHNCG--VLHRDIKDENILIDLNRGELKLIDFGSGAL  160 (273)
T ss_dssp             EEEEECCSSEEEHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred             EEEEEeccCcchHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHCC--CccccCcccceEEecCCCeEEECcccccee
Confidence            999999976 677777753  356999999999999999999999999  9999999999999954 7999999999976


Q ss_pred             hhh-------hhhhcccccccCCCC-CCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccccCCCCC
Q 006019          527 IAM-------AEMAATSKKLSSAPS-ASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS  598 (664)
Q Consensus       527 ~~~-------~~~~~~~pe~~~~~~-~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  598 (664)
                      ...       ++..+.+||...... ++.++|||||||++|||+||+.||...    .    ........    ..    
T Consensus       161 ~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~----~----~i~~~~~~----~~----  224 (273)
T d1xwsa_         161 LKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD----E----EIIRGQVF----FR----  224 (273)
T ss_dssp             CCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH----H----HHHHCCCC----CS----
T ss_pred             cccccccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCc----h----HHhhcccC----CC----
Confidence            532       234556788665444 467799999999999999999999421    1    11111111    11    


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          599 SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       599 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                         ...+.++.+++.+||+.||++|||++|+++
T Consensus       225 ---~~~s~~~~~li~~~L~~dp~~R~s~~eil~  254 (273)
T d1xwsa_         225 ---QRVSSECQHLIRWCLALRPSDRPTFEEIQN  254 (273)
T ss_dssp             ---SCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             ---CCCCHHHHHHHHHHccCCHhHCcCHHHHhc
Confidence               122356889999999999999999999875

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-39  Score=333.12  Aligned_cols=250  Identities=17%  Similarity=0.211  Sum_probs=184.5

Q ss_pred             hhcccccCCCeEEEEEEEC-C-CcEEEEEEeeecccCCCchhHHHHHHHHHHHHhcc---CCCcccceEEEEecC---CC
Q 006019          374 FSNVIGSSPIGTVYKGTLS-N-GVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKV---NHKNFVNLIGFCEEE---EP  445 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~-~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l---~H~niv~l~g~~~~~---~~  445 (664)
                      +.+.||+|+||+||+|+.. + ++.||||++........   ....+.+|+++|+.+   +|||||++++++...   ..
T Consensus        11 i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~---~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~~~   87 (305)
T d1blxa_          11 CVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEG---MPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRE   87 (305)
T ss_dssp             EEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTS---CBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSE
T ss_pred             EEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccch---HHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccccC
Confidence            3478999999999999963 4 66799999976544321   123455677766655   899999999998532   22


Q ss_pred             ceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchh
Q 006019          446 FTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN  525 (664)
Q Consensus       446 ~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~  525 (664)
                      ...++++||+++|.+.... ......+++.....++.|++.||+|||+.+  |+||||||+|||+++++.+||+|||+++
T Consensus        88 ~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~--ivHrDiKp~NILi~~~~~~kl~dfg~~~  164 (305)
T d1blxa_          88 TKLTLVFEHVDQDLTTYLD-KVPEPGVPTETIKDMMFQLLRGLDFLHSHR--VVHRDLKPQNILVTSSGQIKLADFGLAR  164 (305)
T ss_dssp             EEEEEEEECCSCBHHHHHH-HSCTTCSCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECTTCCEEECSCCSCC
T ss_pred             ceEEEEEEeccCCchhhhh-hccCCCCCHHHHHHHHHHHHHHHHHHHhCC--EEecCCCccEEEEcCCCCeeecchhhhh
Confidence            2578999999987765443 345567899999999999999999999999  9999999999999999999999999987


Q ss_pred             hhhhh--------hhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCC----------
Q 006019          526 EIAMA--------EMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ----------  587 (664)
Q Consensus       526 ~~~~~--------~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~----------  587 (664)
                      .....        +..+.+||......++.++||||+||++|||+||+.||...  +..+....+.....          
T Consensus       165 ~~~~~~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~  242 (305)
T d1blxa_         165 IYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGS--SDVDQLGKILDVIGLPGEEDWPRD  242 (305)
T ss_dssp             CCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCGGGSCTT
T ss_pred             hhcccccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCC--CHHHHHHHHHHhhCCCchhccccc
Confidence            65322        34566889888888999999999999999999999999532  22222222211000          


Q ss_pred             -CCcc-cc----CCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          588 -PLQQ-FV----DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       588 -~~~~-~~----d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                       .... ..    ..............+.+|+.+||+.||++|||+.|+++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~sa~e~L~  292 (305)
T d1blxa_         243 VALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  292 (305)
T ss_dssp             CSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             ccchhhhhccccccchhhccccCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence             0000 00    00001112233456889999999999999999999876

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-39  Score=328.37  Aligned_cols=247  Identities=15%  Similarity=0.211  Sum_probs=189.7

Q ss_pred             hcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEEEE
Q 006019          375 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+.||+|+||+||+|+. .+++.||||+++.....   .....++.+|+.+|++++|||||++++++.+..  ..++|+|
T Consensus         7 i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~---~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~--~~~iv~~   81 (292)
T d1unla_           7 LEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDD---EGVPSSALREICLLKELKHKNIVRLHDVLHSDK--KLTLVFE   81 (292)
T ss_dssp             EEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSS---TTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--EEEEEEE
T ss_pred             eeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCC---hHHHHHHHHHHHHHHhcCcCCEEeecccccccc--ceeEEee
Confidence            47899999999999996 47889999999754432   345678999999999999999999999999877  6799999


Q ss_pred             ecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh---
Q 006019          454 YAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA---  530 (664)
Q Consensus       454 y~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~---  530 (664)
                      |+.+++|..+++  ....+++..+..++.|++.||+|||+++  |+||||||+|||++.++.+||+|||.++.....   
T Consensus        82 ~~~~~~l~~~~~--~~~~~~~~~~~~~~~q~~~aL~~lH~~~--IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~~~  157 (292)
T d1unla_          82 FCDQDLKKYFDS--CNGDLDPEIVKSFLFQLLKGLGFCHSRN--VLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRC  157 (292)
T ss_dssp             CCSEEHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTCCEEECCCTTCEECCSCCSC
T ss_pred             eccccccccccc--cccccchhHHHHHHHHHHHHHHHhhcCC--EeeecccCcccccccCCceeeeecchhhcccCCCcc
Confidence            999999988775  4567889999999999999999999998  999999999999999999999999999865322   


Q ss_pred             ------hhhcccccccC-CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCC--------Ccccc--
Q 006019          531 ------EMAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQP--------LQQFV--  593 (664)
Q Consensus       531 ------~~~~~~pe~~~-~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~--------~~~~~--  593 (664)
                            ...+.+||... ....+.++|||||||++|||+||+.||.. ..+..+....+......        .....  
T Consensus       158 ~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (292)
T d1unla_         158 YSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFP-GNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDY  236 (292)
T ss_dssp             CCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCC-CSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTC
T ss_pred             ceeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCC-CCCHHHHHHHHHhhcCCCChhhhhhhhhcccc
Confidence                  12333455444 34468999999999999999999999743 33333333322110000        00000  


Q ss_pred             --------CCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          594 --------DPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       594 --------d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                              ..............+.+|+.+|++.||.+|||++|+++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L~  282 (292)
T d1unla_         237 KPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             CCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             cccccccccchhhhccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                    00111122333456889999999999999999999875

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.1e-39  Score=332.95  Aligned_cols=247  Identities=15%  Similarity=0.185  Sum_probs=183.9

Q ss_pred             hhhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCceeEEE
Q 006019          373 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      .+.+.||+|+||.||+|+. .+|+.||||++......       .++..|++++++++|+|+|..++.|...+. ..++|
T Consensus        10 ~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~-------~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~-~~~iv   81 (299)
T d1ckia_          10 RLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH-------PQLHIESKIYKMMQGGVGIPTIRWCGAEGD-YNVMV   81 (299)
T ss_dssp             EEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTTS-------CCHHHHHHHHHHSTTSTTCCCEEEEEEETT-EEEEE
T ss_pred             EEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhccC-------HHHHHHHHHHHHccCCCcccEEEEEEecCC-EEEEE
Confidence            3558899999999999996 46899999988654322       357889999999998887776666544332 67899


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEec---CCCceEecccCchhhhh
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLT---EDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld---~~~~~kl~DfGla~~~~  528 (664)
                      |||+ +|+|.+.+. .....+++..+..++.+++.||+|||+++  |+||||||+|||++   .+..+||+|||+++...
T Consensus        82 me~~-~~~l~~~~~-~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~  157 (299)
T d1ckia_          82 MELL-GPSLEDLFN-FCSRKFSLKTVLLLADQMISRIEYIHSKN--FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYR  157 (299)
T ss_dssp             EECC-CCBHHHHHH-HTTTCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEECCGGGTTCEEECCCSSCEECB
T ss_pred             EEEc-CCchhhhhh-hccCCCcHHHHHHHHHHHHHHHHHHHHCC--eeeccCCHhhccccccCCCceeeeeccCcceecc
Confidence            9999 456766654 24567999999999999999999999999  99999999999976   45679999999998653


Q ss_pred             h----------------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCCh-HHHHHHHhcC-CCCCc
Q 006019          529 M----------------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSL-EDWAADYLSG-VQPLQ  590 (664)
Q Consensus       529 ~----------------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~-~~~~~~~~~~-~~~~~  590 (664)
                      .                ++..+.+||...+..++.++|||||||++|||+||+.||....... .......... .....
T Consensus       158 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~~~~~~~  237 (299)
T d1ckia_         158 DARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPI  237 (299)
T ss_dssp             CTTTCCBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHHHHHSCH
T ss_pred             ccccccceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhcccCCCCh
Confidence            2                1234456777777789999999999999999999999995332211 1111111000 00000


Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          591 QFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       591 ~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      .       .....++.++.+++.+||+.+|++||++.++.+.|+.+..
T Consensus       238 ~-------~~~~~~p~~~~~li~~cl~~~p~~RP~~~~i~~~l~~~~~  278 (299)
T d1ckia_         238 E-------VLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFH  278 (299)
T ss_dssp             H-------HHTTTSCHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHH
T ss_pred             h-------HhccCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHH
Confidence            0       0111233568999999999999999999999999998753

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-38  Score=328.51  Aligned_cols=249  Identities=18%  Similarity=0.205  Sum_probs=181.2

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCC------Cc
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEE------PF  446 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~------~~  446 (664)
                      +.+.||+|+||+||+|+. .+|+.||||++......+   ...+++.+|+++|++++||||+++++++....      ..
T Consensus        14 i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~---~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~~~   90 (318)
T d3blha1          14 KLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKE---GFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKG   90 (318)
T ss_dssp             EEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTT---SSCHHHHHHHHHHHHCCCTTBCCEEEEEEC----------
T ss_pred             EEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcch---HHHHHHHHHHHHHHHhcCCCccceEeeeecccccccccCc
Confidence            347899999999999997 479999999986654332   23467889999999999999999999986532      12


Q ss_pred             eeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhh
Q 006019          447 TRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  526 (664)
Q Consensus       447 ~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~  526 (664)
                      ..++||||++++.+.....  ....++......|+.|++.||.|||+++  |+||||||+|||++.++.+||+|||+++.
T Consensus        91 ~~~iv~e~~~~~~~~~~~~--~~~~~~~~~~~~i~~qil~~l~~lH~~~--ivHrDlKp~NILl~~~~~~kl~dfg~~~~  166 (318)
T d3blha1          91 SIYLVFDFCEHDLAGLLSN--VLVKFTLSEIKRVMQMLLNGLYYIHRNK--ILHRDMKAANVLITRDGVLKLADFGLARA  166 (318)
T ss_dssp             CEEEEEECCCEEHHHHHTC--TTCCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred             eEEEEEeccCCCccchhhh--cccccccHHHHHHHHHHHHHHHHhccCC--EEecCcCchheeecCCCcEEeeecceeee
Confidence            4689999998877765543  4456888889999999999999999998  99999999999999999999999999875


Q ss_pred             hhh-------------hhhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCCccc
Q 006019          527 IAM-------------AEMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQF  592 (664)
Q Consensus       527 ~~~-------------~~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~~~~  592 (664)
                      ...             .+..+.+||.... ..++.|+|||||||++|||+||+.||...  ...+...............
T Consensus       167 ~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~--~~~~~~~~i~~~~~~~~~~  244 (318)
T d3blha1         167 FSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGN--TEQHQLALISQLCGSITPE  244 (318)
T ss_dssp             CCC-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCTT
T ss_pred             cccccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCC--CHHHHHHHHHHhcCCCChh
Confidence            431             2234556776543 46789999999999999999999999532  2222222211110000000


Q ss_pred             cCCCC--------------CCCC-HH------HHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          593 VDPTL--------------SSFD-EE------QLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       593 ~d~~~--------------~~~~-~~------~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .....              .... .+      ....+.+|+.+||+.||++|||++|+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~  304 (318)
T d3blha1         245 VWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN  304 (318)
T ss_dssp             TSTTCCCC-------CCSSCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             hccccchhhhhhhhcccccccccchhhhccccCCHHHHHHHHHHCcCChhHCcCHHHHHc
Confidence            00000              0000 01      1245678999999999999999999875

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-39  Score=335.20  Aligned_cols=254  Identities=15%  Similarity=0.198  Sum_probs=183.0

Q ss_pred             hhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC----cee
Q 006019          374 FSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----FTR  448 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~----~~~  448 (664)
                      +.+.||+|+||+||+|+.. +|+.||||++.....   .....+.+.+|+++|++++|||||+++++|...+.    ...
T Consensus        22 ~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~---~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~~~   98 (346)
T d1cm8a_          22 DLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQ---SELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDF   98 (346)
T ss_dssp             EEEEC------CEEEEEETTTCCEEEEEECSSTTS---SHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCC
T ss_pred             EEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhc---ChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccceE
Confidence            3478999999999999964 699999999864322   23456789999999999999999999999976542    145


Q ss_pred             EEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhh
Q 006019          449 MMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA  528 (664)
Q Consensus       449 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~  528 (664)
                      ++||||+ +++|..+.+   ...+++.....++.|++.||+|||+++  |+||||||+|||++.++.+|++|||+++...
T Consensus        99 ~lv~e~~-~~~l~~~~~---~~~l~~~~~~~~~~qi~~aL~~LH~~~--IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~  172 (346)
T d1cm8a_          99 YLVMPFM-GTDLGKLMK---HEKLGEDRIQFLVYQMLKGLRYIHAAG--IIHRDLKPGNLAVNEDCELKILDFGLARQAD  172 (346)
T ss_dssp             EEEEECC-SEEHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             EEEEecc-cccHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhCC--CcccccCcchhhcccccccccccccceeccC
Confidence            8999999 557777664   246999999999999999999999999  9999999999999999999999999998764


Q ss_pred             h------hhhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCC--------------
Q 006019          529 M------AEMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQ--------------  587 (664)
Q Consensus       529 ~------~~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~--------------  587 (664)
                      .      ....+.+||.... ..++.++||||+||++|||+||+.||....  ..+..........              
T Consensus       173 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (346)
T d1cm8a_         173 SEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSD--HLDQLKEIMKVTGTPPAEFVQRLQSDE  250 (346)
T ss_dssp             SSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHHHHCCCCHHHHHTCSCHH
T ss_pred             CccccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCCC--hHHHHHHHHhccCCCcHHHHhhhcchh
Confidence            2      2344567776543 557899999999999999999999995332  1111111100000              


Q ss_pred             ------CCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH--HHhhhC
Q 006019          588 ------PLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI--LREITG  638 (664)
Q Consensus       588 ------~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~--L~~i~~  638 (664)
                            ....................+.+|+.+|++.||++|||+.|+++.  |+++..
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~eiL~Hp~f~~~~~  309 (346)
T d1cm8a_         251 AKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLHD  309 (346)
T ss_dssp             HHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC-
T ss_pred             hhhhhccCCcccccchHHhccCCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhCcCCC
Confidence                  000000111111112233567899999999999999999999874  665543

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-39  Score=335.83  Aligned_cols=251  Identities=19%  Similarity=0.236  Sum_probs=182.0

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecC----CCceeE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEE----EPFTRM  449 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~----~~~~~~  449 (664)
                      .++||+|+||+||+|+.. +|+.||||++.....         .+.+|+++|++++|||||++++++...    +....+
T Consensus        25 ~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~---------~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~   95 (350)
T d1q5ka_          25 TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR---------FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN   95 (350)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS---------SCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEE
T ss_pred             eeEEeeCcCeEEEEEEECCCCCEEEEEEECccch---------HHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEE
Confidence            478999999999999975 689999999865332         234799999999999999999998543    222468


Q ss_pred             EEEEecCCCChhhhhcc-cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC-ceEecccCchhhh
Q 006019          450 MVFEYAPNGTLFEHIHI-KESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY-AAKLSDLSFWNEI  527 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~-~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~-~~kl~DfGla~~~  527 (664)
                      +|||||++|.+....+. .....+++..+..|+.|++.||+|||+++  |+||||||+|||++.++ .+||+|||+++..
T Consensus        96 lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~~--IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~  173 (350)
T d1q5ka_          96 LVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFG--ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL  173 (350)
T ss_dssp             EEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTT--EECCCCCGGGEEECTTTCCEEECCCTTCEEC
T ss_pred             EEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhcC--CcccCCCcceEEEecCCCceeEecccchhhc
Confidence            99999987644443321 24567999999999999999999999998  99999999999999775 8999999998765


Q ss_pred             hhh--------hhhccccccc-CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHh---------------
Q 006019          528 AMA--------EMAATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYL---------------  583 (664)
Q Consensus       528 ~~~--------~~~~~~pe~~-~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~---------------  583 (664)
                      ...        ...+.+||.. ....++.++||||+||++|||+||+.||....  ..+....+.               
T Consensus       174 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~--~~~~l~~i~~~~g~~~~~~~~~~~  251 (350)
T d1q5ka_         174 VRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDS--GVDQLVEIIKVLGTPTREQIREMN  251 (350)
T ss_dssp             CTTSCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSS--HHHHHHHHHHHHCCCCHHHHHHHC
T ss_pred             cCCcccccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCC--HHHHHHHHHHHhCCChHHhhhhhc
Confidence            322        2233455544 34568999999999999999999999995322  112111111               


Q ss_pred             cCC--CCCccccCCCC-CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH--HHHhhhC
Q 006019          584 SGV--QPLQQFVDPTL-SSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA--ILREITG  638 (664)
Q Consensus       584 ~~~--~~~~~~~d~~~-~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~--~L~~i~~  638 (664)
                      ...  ........... .........++.+|+.+||+.||++|||+.|+++  .++++.+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~~  311 (350)
T d1q5ka_         252 PNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRD  311 (350)
T ss_dssp             C---CCCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGGGC
T ss_pred             cchhhccccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhccccC
Confidence            000  00000000000 0111223456889999999999999999999986  3566544

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-38  Score=331.52  Aligned_cols=248  Identities=15%  Similarity=0.175  Sum_probs=180.9

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCCc--eeEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPF--TRMM  450 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~--~~~l  450 (664)
                      +.+.||+|+||+||+|+. .+|+.||||++....    .....+.+.+|+++|++++|||||++++++......  ..++
T Consensus        12 ~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~----~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~~   87 (345)
T d1pmea_          12 NLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFE----HQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVY   87 (345)
T ss_dssp             EEEECC---CCCEEEEEETTTCSEEEEEEECCTT----CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEE
T ss_pred             EEEEEeeccCeEEEEEEECCCCcEEEEEEEehhc----ChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceEE
Confidence            347899999999999985 579999999986432    134457899999999999999999999999654311  2345


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  530 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~  530 (664)
                      +++|+.+|+|.+++..   ..+++.....++.|++.||+|||+++  ||||||||+|||++.++.+||+|||+++.....
T Consensus        88 l~~~~~~g~L~~~l~~---~~l~~~~i~~i~~qil~al~yLH~~~--iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~  162 (345)
T d1pmea_          88 LVTHLMGADLYKLLKT---QHLSNDHICYFLYQILRGLKYIHSAN--VLHRDLKPSNLLLNTTCDLKICDFGLARVADPD  162 (345)
T ss_dssp             EEEECCCEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEECTTCCEEECCCTTCEECCGG
T ss_pred             EEEeecCCchhhhhhc---CCCCHHHHHHHHHHHHHHHHHHHHCC--CcCCCCCcceEEECCCCCEEEcccCceeeccCC
Confidence            6677889999999863   35999999999999999999999999  999999999999999999999999998755321


Q ss_pred             ------------hhhccccccc-CCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHh--cCCCCCcc----
Q 006019          531 ------------EMAATSKKLS-SAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYL--SGVQPLQQ----  591 (664)
Q Consensus       531 ------------~~~~~~pe~~-~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~--~~~~~~~~----  591 (664)
                                  ...+.+||.. ....++.++||||+||++|||+||+.||.....  .+......  ........    
T Consensus       163 ~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~~--~~~~~~~~~~~~~~~~~~~~~~  240 (345)
T d1pmea_         163 HDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHY--LDQLNHILGILGSPSQEDLNCI  240 (345)
T ss_dssp             GCBCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHHHHHHHCSCCHHHHHTC
T ss_pred             CccceeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCCCH--HHHHHHHhhhccCCChhhhhhh
Confidence                        2344567765 344568899999999999999999999953221  11111110  00000000    


Q ss_pred             ---------ccCCCCCCCC-----HHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          592 ---------FVDPTLSSFD-----EEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       592 ---------~~d~~~~~~~-----~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                               ...+.....+     .....++.+++.+|++.||++|||+.|+++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~ta~e~L~h  295 (345)
T d1pmea_         241 INLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAH  295 (345)
T ss_dssp             CCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             hhhhhhcccccCCccCCCCHHHhCCCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence                     0000000001     1122468899999999999999999999874

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=2.4e-38  Score=323.66  Aligned_cols=245  Identities=12%  Similarity=0.141  Sum_probs=192.4

Q ss_pred             hhhcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCC-CcccceEEEEecCCCceeEE
Q 006019          373 DFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH-KNFVNLIGFCEEEEPFTRMM  450 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H-~niv~l~g~~~~~~~~~~~l  450 (664)
                      .+.+.||+|+||.||+|+.. +|+.||||++......       ..+.+|+++++.++| +|++.+++++.+..  ..++
T Consensus         8 ~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~-------~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~--~~~~   78 (293)
T d1csna_           8 KVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDA-------PQLRDEYRTYKLLAGCTGIPNVYYFGQEGL--HNVL   78 (293)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTS-------CCHHHHHHHHHHTTTCTTCCCEEEEEEETT--EEEE
T ss_pred             EEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccCc-------HHHHHHHHHHHHhcCCCCCCEEEEEeecCC--ccEE
Confidence            35588999999999999964 6899999987644322       247788899999975 89999999998877  6799


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecC-----CCceEecccCchh
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTE-----DYAAKLSDLSFWN  525 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~-----~~~~kl~DfGla~  525 (664)
                      ||||+ +|+|.++++. ....+++.++..++.+++.||+|||+++  |+||||||+|||++.     ++.+||+|||+++
T Consensus        79 vme~~-~~~l~~~~~~-~~~~~~~~~~~~i~~q~~~~l~~lH~~g--iiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~  154 (293)
T d1csna_          79 VIDLL-GPSLEDLLDL-CGRKFSVKTVAMAAKQMLARVQSIHEKS--LVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVK  154 (293)
T ss_dssp             EEECC-CCBHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHTTT--EECCCCCGGGEEECCSSSTTTTCEEECCCTTCE
T ss_pred             EEEec-CCCHHHHHHh-hccchhhHHHHHHHHHHHHHHHHHHHCC--ceeccCCccceeecCcccccCCceEEcccceeE
Confidence            99999 6899998863 4457999999999999999999999999  999999999999975     5689999999998


Q ss_pred             hhhh----------------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCC-hHHHHHHHhcCC--
Q 006019          526 EIAM----------------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGS-LEDWAADYLSGV--  586 (664)
Q Consensus       526 ~~~~----------------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~-~~~~~~~~~~~~--  586 (664)
                      ....                ++..+.+||......++.++|||||||++|||+||+.||...... ..+.........  
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i~~~~~~  234 (293)
T d1csna_         155 FYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQS  234 (293)
T ss_dssp             ESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHH
T ss_pred             EcccCccccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHHHHHHhccCC
Confidence            6531                234566788888888999999999999999999999999643322 222221111110  


Q ss_pred             CCCccccCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Q 006019          587 QPLQQFVDPTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAILREITG  638 (664)
Q Consensus       587 ~~~~~~~d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~L~~i~~  638 (664)
                      ....++        ...+++++.+++..||+.+|++||+++.+.+.|+++.+
T Consensus       235 ~~~~~l--------~~~~p~~l~~ii~~~~~~~~~~rP~y~~l~~~l~~~~~  278 (293)
T d1csna_         235 TPLREL--------CAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLE  278 (293)
T ss_dssp             SCHHHH--------TTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHH
T ss_pred             CChHHh--------cCCCCHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHHH
Confidence            011111        11223568899999999999999999999999998865

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=1.1e-37  Score=324.33  Aligned_cols=243  Identities=13%  Similarity=0.181  Sum_probs=183.0

Q ss_pred             hhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcccceEEEEecCCCceeEEE
Q 006019          374 FSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMV  451 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~~~lV  451 (664)
                      +.+.||+|+||+||+|+. .+|+.||||++...        ..+++.+|+++|++++ ||||+++++++........++|
T Consensus        39 i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~--------~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v  110 (328)
T d3bqca1          39 LVRKLGRGKYSEVFEAINITNNEKVVVKILKPV--------KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALV  110 (328)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEECSS--------CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEE
T ss_pred             EEEEEecCcCeEEEEEEECCCCCEEEEEEECHH--------HHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEE
Confidence            448899999999999996 46899999998532        1357899999999995 9999999999975543367999


Q ss_pred             EEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCC-ceEecccCchhhhhhh
Q 006019          452 FEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDY-AAKLSDLSFWNEIAMA  530 (664)
Q Consensus       452 ~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~-~~kl~DfGla~~~~~~  530 (664)
                      ||||++|+|....     ..++......++.||+.||+|||+++  |+||||||+|||++.++ .+||+|||+++.....
T Consensus       111 ~e~~~~~~L~~~~-----~~l~e~~i~~i~~qil~aL~~LH~~g--IvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~  183 (328)
T d3bqca1         111 FEHVNNTDFKQLY-----QTLTDYDIRFYMYEILKALDYCHSMG--IMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPG  183 (328)
T ss_dssp             EECCCSCBGGGTT-----TSCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEETTTTEEEECCGGGCEECCTT
T ss_pred             EeecCCCcHHHHh-----cCCCHHHHHHHHHHHHHHHHHHhhcc--cccccccccceEEcCCCCeeeecccccceeccCC
Confidence            9999999997764     35899999999999999999999999  99999999999999655 6999999999765322


Q ss_pred             --------hhhcccccccCC-CCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHH--Hh-----------cCCCC
Q 006019          531 --------EMAATSKKLSSA-PSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAAD--YL-----------SGVQP  588 (664)
Q Consensus       531 --------~~~~~~pe~~~~-~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~--~~-----------~~~~~  588 (664)
                              +..+.+||.... ..++.++||||+||+++||++|+.||.........+...  .+           .....
T Consensus       184 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~  263 (328)
T d3bqca1         184 QEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIEL  263 (328)
T ss_dssp             CCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCC
T ss_pred             CcccccccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCchhHHHHHHHHHHHCCchhhhhhhhccccc
Confidence                    234557776554 447899999999999999999999996443322211110  00           00000


Q ss_pred             ---CccccCCC--------CC-CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          589 ---LQQFVDPT--------LS-SFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       589 ---~~~~~d~~--------~~-~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                         ........        .. ........++.+|+.+|++.||++|||++|+++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~  318 (328)
T d3bqca1         264 DPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME  318 (328)
T ss_dssp             CGGGGGTCCCCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CcccchhcccccccchhhcccccccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence               00000000        00 011223456889999999999999999999875

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-38  Score=326.83  Aligned_cols=241  Identities=20%  Similarity=0.310  Sum_probs=182.0

Q ss_pred             hhhcccccCCCeEEEEEEEC----CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCC-CcccceEEEEecCCCce
Q 006019          373 DFSNVIGSSPIGTVYKGTLS----NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNH-KNFVNLIGFCEEEEPFT  447 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~~----~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H-~niv~l~g~~~~~~~~~  447 (664)
                      ++.+.||+|+||+||+|+..    +|+.||||++........ ....+.+.+|+++|++++| |||+++++++.+..  .
T Consensus        27 ~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~-~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~--~  103 (322)
T d1vzoa_          27 ELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQK-AKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET--K  103 (322)
T ss_dssp             EEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEE-ESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT--E
T ss_pred             EEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccc-hHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCC--c
Confidence            34589999999999999852    478999999865332110 1123568899999999976 89999999998877  7


Q ss_pred             eEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhh
Q 006019          448 RMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI  527 (664)
Q Consensus       448 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~  527 (664)
                      .++|+||+.+|+|.+++...  ..+.......++.|++.|++|+|+.+  |+||||||+|||++.++.+||+|||+++..
T Consensus       104 ~~~v~e~~~~~~L~~~i~~~--~~~~e~~~~~~~~Qi~~al~~lH~~~--ivHrDiKp~Nill~~~~~vkL~DFG~a~~~  179 (322)
T d1vzoa_         104 LHLILDYINGGELFTHLSQR--ERFTEHEVQIYVGEIVLALEHLHKLG--IIYRDIKLENILLDSNGHVVLTDFGLSKEF  179 (322)
T ss_dssp             EEEEECCCCSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECTTSCEEESCSSEEEEC
T ss_pred             eeeeeecccccHHHHHHHhc--ccccHHHHHHHHHHHHHHHHHhhcCC--EEeccCCccceeecCCCCEEEeeccchhhh
Confidence            79999999999999998643  35677888889999999999999999  999999999999999999999999998765


Q ss_pred             hhhh----------hhcccccccCC--CCCCcCCcchhhHHHHHHHHhCCCCccCCC--CChHHHHHHHhcCCCCCcccc
Q 006019          528 AMAE----------MAATSKKLSSA--PSASLESNVYNFGVLLFEMVTGRLPYLVDN--GSLEDWAADYLSGVQPLQQFV  593 (664)
Q Consensus       528 ~~~~----------~~~~~pe~~~~--~~~s~ksDVySfGvvl~El~tG~~P~~~~~--~~~~~~~~~~~~~~~~~~~~~  593 (664)
                      ....          ..+.+||....  ..++.++|||||||+||||+||+.||....  ...............      
T Consensus       180 ~~~~~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~~~~i~~~~~~~~~------  253 (322)
T d1vzoa_         180 VADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEP------  253 (322)
T ss_dssp             CGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCC------
T ss_pred             cccccccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcccCCC------
Confidence            3221          11223444332  246789999999999999999999995432  222222222222111      


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCCCCCCC-----HHHHHH
Q 006019          594 DPTLSSFDEEQLETLGELIKSCVRADPEKRPT-----MRDIAA  631 (664)
Q Consensus       594 d~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs-----~~ev~~  631 (664)
                           ..+.....++.+++.+||+.||++||+     ++|+++
T Consensus       254 -----~~~~~~s~~~~~li~~~l~~dP~~R~s~~~~t~~eil~  291 (322)
T d1vzoa_         254 -----PYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKE  291 (322)
T ss_dssp             -----CCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHT
T ss_pred             -----CCcccCCHHHHHHHHHHcccCHHHcCCCCcccHHHHHc
Confidence                 112234467899999999999999994     788875

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-37  Score=323.93  Aligned_cols=254  Identities=15%  Similarity=0.171  Sum_probs=184.7

Q ss_pred             hcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC---ceeEE
Q 006019          375 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP---FTRMM  450 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~---~~~~l  450 (664)
                      .+.||+|+||+||+|+. .+|+.||||++.....   .....+.+.+|+++|++++|||||++++++.....   ...++
T Consensus        23 ~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~---~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~~~~   99 (348)
T d2gfsa1          23 LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQ---SIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY   99 (348)
T ss_dssp             EEECGGGTTSSEEEEEETTTTEEEEEEECSCTTS---SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCCCCE
T ss_pred             EEEEecCCCeEEEEEEECCCCCEEEEEEECchhc---ChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCceEE
Confidence            47899999999999995 5799999999864332   13345678999999999999999999999864321   13467


Q ss_pred             EEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhhh
Q 006019          451 VFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMA  530 (664)
Q Consensus       451 V~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~~  530 (664)
                      ++||+.+|+|.++++.   ..+++.....++.||+.||+|||+++  |+||||||+|||++.++.+|++|||++......
T Consensus       100 i~~~~~gg~L~~~~~~---~~l~e~~~~~i~~qil~aL~~LH~~g--iiHrDiKp~NILi~~~~~~kl~dfg~a~~~~~~  174 (348)
T d2gfsa1         100 LVTHLMGADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHSAD--IIHRDLKPSNLAVNEDCELKILDFGLARHTDDE  174 (348)
T ss_dssp             EEEECCSEEHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEECTTCCEEECCC----CCTGG
T ss_pred             EEEeecCCchhhhccc---ccccHHHHHHHHHHHHHHHHHHHhCC--CcccccCCccccccccccccccccchhcccCcc
Confidence            7888899999999853   46999999999999999999999999  999999999999999999999999998765432


Q ss_pred             ------hhhcccccccC-CCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHhcCCCCC-cccc---------
Q 006019          531 ------EMAATSKKLSS-APSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPL-QQFV---------  593 (664)
Q Consensus       531 ------~~~~~~pe~~~-~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~~~~~~~-~~~~---------  593 (664)
                            ...+.+||... ....+.++|||||||++|||+||+.||...+  .......+....... .+..         
T Consensus       175 ~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  252 (348)
T d2gfsa1         175 MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTD--HIDQLKLILRLVGTPGAELLKKISSESAR  252 (348)
T ss_dssp             GSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHCCCCHHHHTTCCCHHHH
T ss_pred             cccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCCC--HHHHHHHHHHhcCCCChHHhhhccchhhh
Confidence                  33455677544 4456899999999999999999999995322  111111111100000 0000         


Q ss_pred             ---C--CCCCCC-----CHHHHHHHHHHHHHhccCCCCCCCCHHHHHH--HHHhhhC
Q 006019          594 ---D--PTLSSF-----DEEQLETLGELIKSCVRADPEKRPTMRDIAA--ILREITG  638 (664)
Q Consensus       594 ---d--~~~~~~-----~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~--~L~~i~~  638 (664)
                         .  ......     ......++.+|+.+|++.||++|||++|+++  .++++..
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~elL~Hp~f~~~~~  309 (348)
T d2gfsa1         253 NYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHD  309 (348)
T ss_dssp             HHHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTCC
T ss_pred             hhhhhcccCCCcchhhhcCCCCHHHHHHHHHHCcCChhhCcCHHHHhcCHhhCCCCC
Confidence               0  000000     0112356889999999999999999999987  4555543

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-37  Score=320.67  Aligned_cols=246  Identities=17%  Similarity=0.208  Sum_probs=181.4

Q ss_pred             hcccccCCCeEEEEEEEC-CCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcccceEEEEecCCC----ceeE
Q 006019          375 SNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEP----FTRM  449 (664)
Q Consensus       375 ~~~iG~G~~G~Vy~g~~~-~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~----~~~~  449 (664)
                      .+.||+|+||+||+|+.. +|+.||||++.....   .....+.+.+|+.++++++|||||++++++...+.    ...|
T Consensus        22 ~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~---~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~~~   98 (355)
T d2b1pa1          22 LKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ---NQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVY   98 (355)
T ss_dssp             EEECSCC--CEEEEEEETTTTEEEEEEEEESTTS---SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEEE
T ss_pred             EEEeecCcCeEEEEEEECCCCCEEEEEEEChhhc---CHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCceeE
Confidence            378999999999999975 699999999975432   23445679999999999999999999999965422    2679


Q ss_pred             EEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecccCchhhhhh
Q 006019          450 MVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM  529 (664)
Q Consensus       450 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~DfGla~~~~~  529 (664)
                      +||||+.++.+ +.++    ..+++.....++.|++.||+|||+.+  |+||||||+|||++.++.+|++|||+++....
T Consensus        99 iv~Ey~~~~l~-~~~~----~~~~~~~i~~~~~qil~gl~~LH~~g--iiHrDlKP~Nil~~~~~~~kl~df~~~~~~~~  171 (355)
T d2b1pa1          99 LVMELMDANLC-QVIQ----MELDHERMSYLLYQMLCGIKHLHSAG--IIHRDLKPSNIVVKSDCTLKILDFGLARTAGT  171 (355)
T ss_dssp             EEEECCSEEHH-HHHT----SCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEECTTCCEEECCCCC------
T ss_pred             EEEeccchHHH-Hhhh----cCCCHHHHHHHHHHHHHHHHHhhhcc--cccccCCccccccccccceeeechhhhhcccc
Confidence            99999976544 4443    35899999999999999999999999  99999999999999999999999999876532


Q ss_pred             --------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCChHHHHHHHh------------------
Q 006019          530 --------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYL------------------  583 (664)
Q Consensus       530 --------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~~~~~~~~~~------------------  583 (664)
                              .+..+.+||...+..++.++||||+||+++||++|+.||....  ........+                  
T Consensus       172 ~~~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~  249 (355)
T d2b1pa1         172 SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRD--YIDQWNKVIEQLGTPCPEFMKKLQPTV  249 (355)
T ss_dssp             ---------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHHHHCCCCHHHHTTSCHHH
T ss_pred             ccccccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCCC--HHHHHHHHHHhccCCCHHHHHHhhhhH
Confidence                    2334567888888889999999999999999999999994322  121111111                  


Q ss_pred             ----cCCCCC-----ccccC----CCCCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 006019          584 ----SGVQPL-----QQFVD----PTLSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAAI  632 (664)
Q Consensus       584 ----~~~~~~-----~~~~d----~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~~  632 (664)
                          ......     .....    +............+.+|+.+|++.||++|||++|+++.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~H  311 (355)
T d2b1pa1         250 RNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH  311 (355)
T ss_dssp             HHHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             HHHhhcCccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence                110000     00000    00011123345678999999999999999999999753

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.5e-32  Score=289.44  Aligned_cols=252  Identities=17%  Similarity=0.223  Sum_probs=181.3

Q ss_pred             hhhcccccCCCeEEEEEEE-CCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-----------CCcccceEEEE
Q 006019          373 DFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-----------HKNFVNLIGFC  440 (664)
Q Consensus       373 ~~~~~iG~G~~G~Vy~g~~-~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-----------H~niv~l~g~~  440 (664)
                      .+.+.||+|+||+||+|+. .+|+.||||+++..      ....+.+.+|++++++++           |+|||++++++
T Consensus        16 ~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~------~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~   89 (362)
T d1q8ya_          16 ILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD------KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHF   89 (362)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC------HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEE
T ss_pred             EEEEEEeeCCCeEEEEEEECCCCCEEEEEEEecc------ccchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEe
Confidence            4568999999999999996 47999999998632      223467888999988875           57899999998


Q ss_pred             ecCCCceeEEEEEecCCCChh-hhhcccCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCeEEeCcCCCCeEecCCC----
Q 006019          441 EEEEPFTRMMVFEYAPNGTLF-EHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDY----  514 (664)
Q Consensus       441 ~~~~~~~~~lV~Ey~~~GsL~-~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~-~~~~ivHrDLk~~NILld~~~----  514 (664)
                      ........+++++++..+... ..........+++.....++.+|+.||+|||+ .+  |+||||||+|||++.++    
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~--IvHrDlKp~NIll~~~~~~~~  167 (362)
T d1q8ya_          90 NHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCG--IIHTDIKPENVLMEIVDSPEN  167 (362)
T ss_dssp             EEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTC--EECSCCSGGGEEEEEEETTTT
T ss_pred             eeccccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhcC--cccccCChhHeeeeccCcccc
Confidence            765444567777777655443 33333456678899999999999999999997 77  99999999999998665    


Q ss_pred             --ceEecccCchhhhhh------hhhhcccccccCCCCCCcCCcchhhHHHHHHHHhCCCCccCCCCC----hHHHHHHH
Q 006019          515 --AAKLSDLSFWNEIAM------AEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGS----LEDWAADY  582 (664)
Q Consensus       515 --~~kl~DfGla~~~~~------~~~~~~~pe~~~~~~~s~ksDVySfGvvl~El~tG~~P~~~~~~~----~~~~~~~~  582 (664)
                        .+|++|||.++....      ....+.+||......++.++||||+||+++||+||+.||......    ..+.....
T Consensus       168 ~~~~kl~dfg~s~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~  247 (362)
T d1q8ya_         168 LIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQI  247 (362)
T ss_dssp             EEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHH
T ss_pred             cceeeEeecccccccccccccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCCccccccchhHHHHHH
Confidence              489999999876532      233556788777778899999999999999999999999643221    11111000


Q ss_pred             h---------------------cCCCCCccccCCC----------CCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 006019          583 L---------------------SGVQPLQQFVDPT----------LSSFDEEQLETLGELIKSCVRADPEKRPTMRDIAA  631 (664)
Q Consensus       583 ~---------------------~~~~~~~~~~d~~----------~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~ev~~  631 (664)
                      .                     ........+....          ..........++.+|+.+|++.||++|||++|+++
T Consensus       248 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L~  327 (362)
T d1q8ya_         248 IELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVN  327 (362)
T ss_dssp             HHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHT
T ss_pred             HHHhCCCCHHHhhcccccccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            0                     0000000000000          11234566778999999999999999999999986


Q ss_pred             H
Q 006019          632 I  632 (664)
Q Consensus       632 ~  632 (664)
                      .
T Consensus       328 H  328 (362)
T d1q8ya_         328 H  328 (362)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.93  E-value=4.5e-26  Score=234.44  Aligned_cols=156  Identities=28%  Similarity=0.500  Sum_probs=145.8

Q ss_pred             CchHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCC--ccceeEecC----CcEEEEEeCCCCccc--cccccccCCCC
Q 006019           27 SLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPC--SWFGVECSD----GKVVNLNLKDLCLEG--TLAPEIQSLTH   98 (664)
Q Consensus        27 ~~~~~~~all~~k~~~~~~~~~~l~~W~~~~~~~~~C--~w~gv~C~~----~~v~~l~L~~~~l~g--~ip~~~~~l~~   98 (664)
                      |.++|++||++||+++. || ..+++|.   .++|||  .|.||+|+.    +||+.|+|++++++|  ++|+++++|++
T Consensus         3 c~~~e~~aLl~~k~~~~-~~-~~l~sW~---~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~   77 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLG-NP-TTLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY   77 (313)
T ss_dssp             SCHHHHHHHHHHHHHTT-CC-GGGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTT
T ss_pred             CCHHHHHHHHHHHHHCC-CC-CcCCCCC---CCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCcc
Confidence            68899999999999986 45 3689996   568999  599999984    379999999999998  58999999999


Q ss_pred             CCEEEccC-CcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecccCcccccCCccccCCCCCCEeeCC
Q 006019           99 IKSIILRN-NSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVD  177 (664)
Q Consensus        99 L~~l~L~~-N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~  177 (664)
                      |++|+|++ |+|+|.||..|++|++|++|+|++|++.|..|..+..+.+|+.++++.|++.+.+|..+++++.|+.++++
T Consensus        78 L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~  157 (313)
T d1ogqa_          78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD  157 (313)
T ss_dssp             CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred             ccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecc
Confidence            99999996 89999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccccc
Q 006019          178 EGQLSSAAKK  187 (664)
Q Consensus       178 ~n~l~g~~p~  187 (664)
                      +|.++|.+|.
T Consensus       158 ~n~l~~~ip~  167 (313)
T d1ogqa_         158 GNRISGAIPD  167 (313)
T ss_dssp             SSCCEEECCG
T ss_pred             cccccccccc
Confidence            9999999997

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.86  E-value=9.6e-23  Score=193.55  Aligned_cols=166  Identities=11%  Similarity=0.053  Sum_probs=118.7

Q ss_pred             hhcccccCCCeEEEEEEECCCcEEEEEEeeecccC-----C--------CchhHHHHHHHHHHHHhccCCCcccceEEEE
Q 006019          374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAK-----D--------WPKNLEVQFRKKIDTLSKVNHKNFVNLIGFC  440 (664)
Q Consensus       374 ~~~~iG~G~~G~Vy~g~~~~~~~vavk~~~~~~~~-----~--------~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~  440 (664)
                      +.+.||+|+||.||+|+..+|+.||||+++.....     .        ........+..|...+.+++|.+++..+++.
T Consensus         4 vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~~   83 (191)
T d1zara2           4 IGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAWE   83 (191)
T ss_dssp             EEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEEE
T ss_pred             hCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEec
Confidence            45889999999999999989999999987532211     0        0111234466789999999999999987653


Q ss_pred             ecCCCceeEEEEEecCCCChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCeEEeCcCCCCeEecCCCceEecc
Q 006019          441 EEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSD  520 (664)
Q Consensus       441 ~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~~~~ivHrDLk~~NILld~~~~~kl~D  520 (664)
                            ..+++|||++++.+.+.         +.....+++.+++++++|||+++  |+||||||+|||++++ .++|+|
T Consensus        84 ------~~~lvme~~~~~~~~~l---------~~~~~~~i~~ql~~~l~~lH~~g--iiHrDiKP~NILv~~~-~~~liD  145 (191)
T d1zara2          84 ------GNAVLMELIDAKELYRV---------RVENPDEVLDMILEEVAKFYHRG--IVHGDLSQYNVLVSEE-GIWIID  145 (191)
T ss_dssp             ------TTEEEEECCCCEEGGGC---------CCSCHHHHHHHHHHHHHHHHHTT--EECSCCSTTSEEEETT-EEEECC
T ss_pred             ------CCEEEEEeeccccccch---------hhHHHHHHHHHHHHHHHHHhhCC--EEEccCChhheeeeCC-CEEEEE
Confidence                  12799999988655432         23335678999999999999999  9999999999999965 589999


Q ss_pred             cCchhhhhhhhh-hcc------cccccCCCCCCcCCcchhhHHHH
Q 006019          521 LSFWNEIAMAEM-AAT------SKKLSSAPSASLESNVYNFGVLL  558 (664)
Q Consensus       521 fGla~~~~~~~~-~~~------~pe~~~~~~~s~ksDVySfGvvl  558 (664)
                      ||.|+....... ...      ..+++ ...++.++||||..--+
T Consensus       146 FG~a~~~~~~~~~~~l~rd~~~~~~~f-~r~y~~~~d~~s~~~~~  189 (191)
T d1zara2         146 FPQSVEVGEEGWREILERDVRNIITYF-SRTYRTEKDINSAIDRI  189 (191)
T ss_dssp             CTTCEETTSTTHHHHHHHHHHHHHHHH-HHHHCCCCCHHHHHHHH
T ss_pred             CCCcccCCCCCcHHHHHHHHHHHHHHH-cCCCCCcccHHHHHHHH
Confidence            999876532110 000      01111 23456788999965433

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.54  E-value=8.6e-15  Score=137.97  Aligned_cols=124  Identities=20%  Similarity=0.280  Sum_probs=110.5

Q ss_pred             CccceeEecC-----------CcEEEEEeCCCCccccccc-cccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeec
Q 006019           63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH  130 (664)
Q Consensus        63 C~w~gv~C~~-----------~~v~~l~L~~~~l~g~ip~-~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~  130 (664)
                      |+|..|.|++           .+++.|+|++|.|++.++. .+.++++|+.|+|++|.+.+..+..+..+++|++|+|++
T Consensus         8 C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_           8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             EcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            6799999973           2678999999999886654 578999999999999999999999999999999999999


Q ss_pred             CcccccCCccccCCcccceeecccCcccccCCccccCCCCCCEeeCCCCccccccc
Q 006019          131 NNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (664)
Q Consensus       131 N~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p  186 (664)
                      |++++..|..|.++++|++|+|++|++++..|..|..+++|++|+|++|.+.+..+
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccc
Confidence            99997767778999999999999999998777788999999999999999987544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.40  E-value=9.4e-14  Score=141.24  Aligned_cols=116  Identities=22%  Similarity=0.371  Sum_probs=110.5

Q ss_pred             CcEEEEEeCC-CCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceee
Q 006019           73 GKVVNLNLKD-LCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (664)
Q Consensus        73 ~~v~~l~L~~-~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~  151 (664)
                      .+++.|+|++ |+++|.+|++|++|++|++|+|++|.|.|..|..+..+..|+.++++.|++.+.+|..++.++.|++++
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~  155 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceee
Confidence            3788999986 899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCcccccCCccccCCCCC-CEeeCCCCccccccccc
Q 006019          152 LDNNDFVGSLSPEIYKLQVL-SESQVDEGQLSSAAKKE  188 (664)
Q Consensus       152 l~~N~~~g~iP~~~~~l~~L-~~l~l~~n~l~g~~p~~  188 (664)
                      +++|.++|.+|..++++..+ +.++++.|+++|..|..
T Consensus       156 l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~  193 (313)
T d1ogqa_         156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT  193 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG
T ss_pred             cccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999886 89999999999998863

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=1.1e-12  Score=113.77  Aligned_cols=102  Identities=23%  Similarity=0.256  Sum_probs=91.0

Q ss_pred             EEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecccCc
Q 006019           77 NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNND  156 (664)
Q Consensus        77 ~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~N~  156 (664)
                      .|+|++|+++ .++ .+..+++|+.|+|++|.++ .+|+.++.+++|+.|++++|++++ +| .++.+++|+.|++++|+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCc
Confidence            5899999998 555 5999999999999999998 689899999999999999999995 65 58999999999999999


Q ss_pred             ccccC-CccccCCCCCCEeeCCCCcccc
Q 006019          157 FVGSL-SPEIYKLQVLSESQVDEGQLSS  183 (664)
Q Consensus       157 ~~g~i-P~~~~~l~~L~~l~l~~n~l~g  183 (664)
                      ++..- ...+.++++|++|++++|.++.
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            98532 3568999999999999999985

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.34  E-value=1.6e-12  Score=122.03  Aligned_cols=109  Identities=20%  Similarity=0.284  Sum_probs=98.0

Q ss_pred             EEEEeCCCCccccccccccCCCCCCEEEccCCcccccC-CcccCCCCCCCEEEeecCcccccCCccccCCcccceeeccc
Q 006019           76 VNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGII-PEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN  154 (664)
Q Consensus        76 ~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~i-p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~  154 (664)
                      +.++.++++|+ .||..+.  +.++.|+|++|.|++.+ +..|.++++|+.|+|++|++.+..+..+..+++|+.|+|++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            46889999999 7888764  78999999999998766 45678999999999999999999999999999999999999


Q ss_pred             CcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          155 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       155 N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      |++++..|..|.++++|++|+|++|+|++..|.
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~  120 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG  120 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTT
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHH
Confidence            999977777899999999999999999986554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.5e-11  Score=122.80  Aligned_cols=113  Identities=20%  Similarity=0.201  Sum_probs=69.0

Q ss_pred             cEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecc
Q 006019           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~  153 (664)
                      ++..|+|++|++.+..+..+..+++|+.+++++|.+++..+..|..+++|+.|+|++|++++..|..+.++++|+.++++
T Consensus       106 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~  185 (284)
T d1ozna_         106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH  185 (284)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             cCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhh
Confidence            45666666666655444455556666666666666665444555566666666666666665555555666666666666


Q ss_pred             cCcccccCCccccCCCCCCEeeCCCCccccccc
Q 006019          154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (664)
Q Consensus       154 ~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p  186 (664)
                      +|++++..|..|.++++|++|++++|++++..|
T Consensus       186 ~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~  218 (284)
T d1ozna_         186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT  218 (284)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred             hccccccChhHhhhhhhcccccccccccccccc
Confidence            666666666666666666666666666665444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=4.4e-11  Score=107.86  Aligned_cols=109  Identities=17%  Similarity=0.172  Sum_probs=91.4

Q ss_pred             CCccceeEecCCcEEEEEeCCCCccccccccccCCCCCCEEEccCC-cccccCCcccCCCCCCCEEEeecCcccccCCcc
Q 006019           62 PCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNN-SFSGIIPEGFGELEELEVLDFGHNNFSGPLPND  140 (664)
Q Consensus        62 ~C~w~gv~C~~~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N-~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~  140 (664)
                      |+.+++|+|..          +++. .+|..+..+++|+.|+|++| .++..-+..|.++++|+.|+|++|+++..-|..
T Consensus         7 c~~~~~l~c~~----------~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~   75 (156)
T d2ifga3           7 PHGSSGLRCTR----------DGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA   75 (156)
T ss_dssp             CSSSSCEECCS----------SCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTG
T ss_pred             cCCCCeEEecC----------CCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccc
Confidence            44577788753          3333 46777888999999999866 587655567999999999999999999766778


Q ss_pred             ccCCcccceeecccCcccccCCccccCCCCCCEeeCCCCccc
Q 006019          141 LGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS  182 (664)
Q Consensus       141 ~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~  182 (664)
                      |..+++|++|+|++|+++ .+|..+.....|+.|+|++|.|.
T Consensus        76 f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          76 FHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             GGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccccccccceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            999999999999999999 88888777778999999999986

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=5.2e-11  Score=117.59  Aligned_cols=111  Identities=23%  Similarity=0.226  Sum_probs=64.1

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccc-----------
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDL-----------  141 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~-----------  141 (664)
                      .+++.|+|++|.|+ .+| .++.+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+.+..+..+           
T Consensus        55 ~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l  131 (266)
T d1p9ag_          55 TRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL  131 (266)
T ss_dssp             TTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC
T ss_pred             cccccccccccccc-ccc-cccccccccccccccccccc-cccccccccccccccccccccceeeccccccccccccccc
Confidence            46777777777766 344 34566677777777776664 34456666666666666665554333333           


Q ss_pred             -------------cCCcccceeecccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          142 -------------GINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       142 -------------~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                                   ..+++|+.|++++|++++..|..+..+++|++|+|++|+|+ .+|.
T Consensus       132 ~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~  189 (266)
T d1p9ag_         132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK  189 (266)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred             cccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccCh
Confidence                         34455555555555555544444555555555555555555 4443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=3.3e-11  Score=109.45  Aligned_cols=106  Identities=20%  Similarity=0.200  Sum_probs=89.8

Q ss_pred             cEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecc
Q 006019           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~  153 (664)
                      ++..|+|++|+++. |+.....+++|+.|+|++|.++ .++ .+..+++|++|+|++|+++...+..+..+++|+.|+++
T Consensus        19 ~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          19 RDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   95 (162)
T ss_dssp             SCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             cCcEEECCCCCCCc-cCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccceec
Confidence            67899999999984 6766688999999999999998 454 58899999999999999996434445679999999999


Q ss_pred             cCcccccCC--ccccCCCCCCEeeCCCCcccc
Q 006019          154 NNDFVGSLS--PEIYKLQVLSESQVDEGQLSS  183 (664)
Q Consensus       154 ~N~~~g~iP--~~~~~l~~L~~l~l~~n~l~g  183 (664)
                      +|+++. ++  ..+..+++|++|++++|.++.
T Consensus        96 ~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          96 NNSLVE-LGDLDPLASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             SCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             cccccc-cccccccccccccchhhcCCCcccc
Confidence            999973 44  368899999999999999864

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=4.2e-11  Score=119.42  Aligned_cols=110  Identities=18%  Similarity=0.234  Sum_probs=55.6

Q ss_pred             cEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecc
Q 006019           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~  153 (664)
                      .+..+++++|.|++..+..+..+++|+.|+|++|.+.+..|..|.++++|+.+++++|++++..|..|..+++|++|+++
T Consensus       130 ~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~  209 (284)
T d1ozna_         130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF  209 (284)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             ccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccc
Confidence            34455555555543333334445555555555555554444445555555555555555555445555555555555555


Q ss_pred             cCcccccCCccccCCCCCCEeeCCCCcccc
Q 006019          154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (664)
Q Consensus       154 ~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g  183 (664)
                      +|++++..|..+.++++|++|+|++|.+.+
T Consensus       210 ~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         210 ANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             SSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             ccccccccccccccccccCEEEecCCCCCC
Confidence            555554444445555555555555555544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.5e-10  Score=114.23  Aligned_cols=110  Identities=16%  Similarity=0.209  Sum_probs=87.0

Q ss_pred             cEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecc
Q 006019           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~  153 (664)
                      ++..|+|+++.+.+..+..+..+.+|+.|++++|.+.+..+..+..+++|+.|++++|++++..|..+..+++|++|+|+
T Consensus       101 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls  180 (266)
T d1p9ag_         101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ  180 (266)
T ss_dssp             TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             ccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecc
Confidence            34444444444444344445566666667777777776556667788999999999999998777789999999999999


Q ss_pred             cCcccccCCccccCCCCCCEeeCCCCccccc
Q 006019          154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  184 (664)
Q Consensus       154 ~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~  184 (664)
                      +|+|+ .||..+..+++|+.|+|++|.+...
T Consensus       181 ~N~L~-~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         181 ENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             SSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             cCCCc-ccChhHCCCCCCCEEEecCCCCCCC
Confidence            99999 9999999999999999999998753

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.96  E-value=5.8e-10  Score=96.08  Aligned_cols=80  Identities=20%  Similarity=0.335  Sum_probs=72.5

Q ss_pred             CEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecccCcccccCCccccCCCCCCEeeCCCC
Q 006019          100 KSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEG  179 (664)
Q Consensus       100 ~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L~~l~l~~n  179 (664)
                      |.|+|++|+++ .+| .+..+++|++|++++|+++ .+|..++.+++|++|++++|.+++ +| .+.++++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            68999999998 555 5899999999999999998 689999999999999999999984 55 5999999999999999


Q ss_pred             ccccc
Q 006019          180 QLSSA  184 (664)
Q Consensus       180 ~l~g~  184 (664)
                      +++..
T Consensus        76 ~i~~~   80 (124)
T d1dcea3          76 RLQQS   80 (124)
T ss_dssp             CCCSS
T ss_pred             ccCCC
Confidence            99853

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.94  E-value=1.1e-09  Score=109.86  Aligned_cols=109  Identities=17%  Similarity=0.221  Sum_probs=95.7

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      ..+..+++++|++. .+|..  .+++|+.|++++|...+.++..+..++.+++|++++|.+++..|..+.++++|++|+|
T Consensus       150 ~~L~~l~l~~n~l~-~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L  226 (305)
T d1xkua_         150 KKLSYIRIADTNIT-TIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL  226 (305)
T ss_dssp             TTCCEEECCSSCCC-SCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred             cccCccccccCCcc-ccCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeec
Confidence            36788999999887 46544  3689999999999999999999999999999999999999887888899999999999


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCccccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p  186 (664)
                      ++|+++ .||..+.++++|++|+|++|+++. |+
T Consensus       227 ~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~-i~  258 (305)
T d1xkua_         227 NNNKLV-KVPGGLADHKYIQVVYLHNNNISA-IG  258 (305)
T ss_dssp             CSSCCS-SCCTTTTTCSSCCEEECCSSCCCC-CC
T ss_pred             cccccc-ccccccccccCCCEEECCCCccCc-cC
Confidence            999998 789999999999999999999984 44

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.90  E-value=1.7e-09  Score=108.61  Aligned_cols=110  Identities=17%  Similarity=0.203  Sum_probs=82.4

Q ss_pred             cEEEEEeCCCCc--cccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceee
Q 006019           74 KVVNLNLKDLCL--EGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (664)
Q Consensus        74 ~v~~l~L~~~~l--~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~  151 (664)
                      .+..++...+..  .+..+..+..+++|+.+++++|.++ .+|..+  +++|+.|++++|..++..+..+..++.+++|+
T Consensus       125 ~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~  201 (305)
T d1xkua_         125 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLG  201 (305)
T ss_dssp             TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEE
T ss_pred             cccccccccccccccCCCccccccccccCccccccCCcc-ccCccc--CCccCEEECCCCcCCCCChhHhhccccccccc
Confidence            345566665543  3344556777888888888888876 466543  57888888888888888888888888888888


Q ss_pred             cccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       152 l~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      +++|.+++..|..+.++++|++|+|++|+|+ .+|.
T Consensus       202 ~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~  236 (305)
T d1xkua_         202 LSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG  236 (305)
T ss_dssp             CCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCT
T ss_pred             cccccccccccccccccccceeeeccccccc-cccc
Confidence            8888888777777888888888888888887 4553

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.2e-09  Score=98.80  Aligned_cols=90  Identities=19%  Similarity=0.237  Sum_probs=77.8

Q ss_pred             ccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecccCcccccCCccccCCCC
Q 006019           91 PEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQV  170 (664)
Q Consensus        91 ~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~  170 (664)
                      +.+.++..|+.|+|++|.++ .||..+..+++|++|+|++|+++ .++ .+..+++|++|++++|+++..-+..+..+++
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             HhccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccc
Confidence            35778889999999999998 56777788999999999999999 565 5889999999999999998544444568999


Q ss_pred             CCEeeCCCCcccc
Q 006019          171 LSESQVDEGQLSS  183 (664)
Q Consensus       171 L~~l~l~~n~l~g  183 (664)
                      |+.|++++|+++.
T Consensus        89 L~~L~L~~N~i~~  101 (162)
T d1a9na_          89 LTELILTNNSLVE  101 (162)
T ss_dssp             CCEEECCSCCCCC
T ss_pred             cccceeccccccc
Confidence            9999999999974

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.81  E-value=7.3e-09  Score=97.90  Aligned_cols=103  Identities=23%  Similarity=0.349  Sum_probs=76.6

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.+++ ++ .++.+++|+.|++++|.+++ +| .+..+++|+.|++++|.+.. + ..+..+++|+.+++
T Consensus        68 ~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~  141 (210)
T d1h6ta2          68 PNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYL  141 (210)
T ss_dssp             TTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEEC
T ss_pred             CCCCEEeCCCccccC-cc-ccccCccccccccccccccc-cc-cccccccccccccccccccc-c-cccccccccccccc
Confidence            478899999998886 44 36888999999999998875 55 57888888889888888763 3 34666777777777


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCcccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g  183 (664)
                      ++|.+++  +..+.++++|+.+++++|++++
T Consensus       142 ~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~  170 (210)
T d1h6ta2         142 GNNKITD--ITVLSRLTKLDTLSLEDNQISD  170 (210)
T ss_dssp             CSSCCCC--CGGGGGCTTCSEEECCSSCCCC
T ss_pred             ccccccc--cccccccccccccccccccccc
Confidence            7777653  2345667777777777777765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.6e-08  Score=90.61  Aligned_cols=93  Identities=11%  Similarity=-0.084  Sum_probs=78.2

Q ss_pred             ccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCc-ccccCCccccCCcccceeecccCcccccCCccccCCCCC
Q 006019           93 IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN-FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVL  171 (664)
Q Consensus        93 ~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~-l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~l~~L  171 (664)
                      ...+.....++.+++.+. .+|..+..+++|+.|+|++|+ ++..-+..|.++++|+.|+|++|+++..-|..|..+++|
T Consensus         4 ~C~c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L   82 (156)
T d2ifga3           4 ACCPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL   82 (156)
T ss_dssp             SSCCSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCC
T ss_pred             CCCcCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccc
Confidence            345556677999999887 578889999999999998775 775444568999999999999999997777889999999


Q ss_pred             CEeeCCCCcccccccc
Q 006019          172 SESQVDEGQLSSAAKK  187 (664)
Q Consensus       172 ~~l~l~~n~l~g~~p~  187 (664)
                      ++|+|++|+|+ .+|.
T Consensus        83 ~~L~Ls~N~l~-~l~~   97 (156)
T d2ifga3          83 SRLNLSFNALE-SLSW   97 (156)
T ss_dssp             CEEECCSSCCS-CCCS
T ss_pred             cceeccCCCCc-ccCh
Confidence            99999999998 4553

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.70  E-value=1.9e-08  Score=94.11  Aligned_cols=101  Identities=22%  Similarity=0.323  Sum_probs=57.4

Q ss_pred             cEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecc
Q 006019           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~  153 (664)
                      +++.|+++++++.. ++ .+..+++|++|+|++|.+++..|  ++++++|++|++++|.+.. +| .+.++++|+.|+++
T Consensus        41 ~l~~L~l~~~~i~~-l~-~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~  114 (199)
T d2omxa2          41 QVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLF  114 (199)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECC
T ss_pred             CCCEEECCCCCCCC-cc-ccccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc-cccccccccccccc
Confidence            45566666665552 32 35566666666666666654322  5666666666666666552 33 35566666666666


Q ss_pred             cCcccccCCccccCCCCCCEeeCCCCccc
Q 006019          154 NNDFVGSLSPEIYKLQVLSESQVDEGQLS  182 (664)
Q Consensus       154 ~N~~~g~iP~~~~~l~~L~~l~l~~n~l~  182 (664)
                      +|.+...  ..+.++++|+.|++++|++.
T Consensus       115 ~~~~~~~--~~~~~l~~L~~L~l~~n~l~  141 (199)
T d2omxa2         115 NNQITDI--DPLKNLTNLNRLELSSNTIS  141 (199)
T ss_dssp             SSCCCCC--GGGTTCTTCSEEECCSSCCC
T ss_pred             ccccccc--cccchhhhhHHhhhhhhhhc
Confidence            6655532  23555666666666666654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.70  E-value=1.2e-08  Score=105.39  Aligned_cols=106  Identities=20%  Similarity=0.237  Sum_probs=90.5

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+++++.+++..  .+..++.++.++++.|.+.+  +..+..+++++.|++++|++++. + .+..+++|+.|++
T Consensus       263 ~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L  336 (384)
T d2omza2         263 TKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFF  336 (384)
T ss_dssp             TTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEEC
T ss_pred             ccCCEeeccCcccCCCC--cccccccccccccccccccc--ccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEEC
Confidence            47899999999998643  47889999999999999986  34578899999999999999974 3 3888999999999


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCccccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p  186 (664)
                      ++|++++ +| .+.++++|++|++++|++++-+|
T Consensus       337 ~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         337 ANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             CSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG
T ss_pred             CCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh
Confidence            9999984 55 68999999999999999998655

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.67  E-value=2.3e-10  Score=107.44  Aligned_cols=109  Identities=17%  Similarity=0.217  Sum_probs=88.1

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .++..|+|++|+++ .++ .+..|++|+.|+|++|.++ .+|..+..+++|+.|++++|+++. ++ .+..+++|+.|+|
T Consensus        48 ~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~L  122 (198)
T d1m9la_          48 KACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYM  122 (198)
T ss_dssp             TTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HH-HHHHHHHSSEEEE
T ss_pred             cccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-cc-ccccccccccccc
Confidence            47889999999888 465 5888999999999999987 567655566789999999999884 43 5778899999999


Q ss_pred             ccCcccccCC--ccccCCCCCCEeeCCCCcccccccc
Q 006019          153 DNNDFVGSLS--PEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       153 ~~N~~~g~iP--~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      ++|+++. ++  ..+..+++|+.|+|++|.++...+.
T Consensus       123 ~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  158 (198)
T d1m9la_         123 SNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             SEEECCC-HHHHHHHTTTTTCSEEEECSSHHHHHHCT
T ss_pred             ccchhcc-ccccccccCCCccceeecCCCccccCccc
Confidence            9999874 33  4678899999999999988766554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.65  E-value=4.4e-08  Score=91.51  Aligned_cols=104  Identities=21%  Similarity=0.332  Sum_probs=88.6

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|.+++. ++ ++++++|+.|++++|.+.. +| .+.+++.|+.|++++|.+...  ..+..+++|+.|++
T Consensus        62 ~nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l  135 (199)
T d2omxa2          62 NNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLEL  135 (199)
T ss_dssp             TTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEEC
T ss_pred             CCcCcCccccccccCc-cc-ccCCccccccccccccccc-cc-ccccccccccccccccccccc--cccchhhhhHHhhh
Confidence            5899999999999874 43 8999999999999999874 44 488999999999999998853  35788999999999


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  184 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~  184 (664)
                      ++|++.. +| .+..+++|+.|++++|++++.
T Consensus       136 ~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~l  165 (199)
T d2omxa2         136 SSNTISD-IS-ALSGLTSLQQLNFSSNQVTDL  165 (199)
T ss_dssp             CSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC
T ss_pred             hhhhhcc-cc-cccccccccccccccccccCC
Confidence            9999873 44 588999999999999999864

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.61  E-value=3.9e-08  Score=101.32  Aligned_cols=110  Identities=19%  Similarity=0.248  Sum_probs=92.7

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .++..|++++|.+++..  .++.+++|+.|++++|.+++..  .+..+..++.++++.|++++ + ..+..+++++.|++
T Consensus       241 ~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~-~-~~~~~~~~l~~L~l  314 (384)
T d2omza2         241 TNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED-I-SPISNLKNLTYLTL  314 (384)
T ss_dssp             TTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC-C-GGGGGCTTCSEEEC
T ss_pred             cccchhccccCccCCCC--cccccccCCEeeccCcccCCCC--cccccccccccccccccccc-c-cccchhcccCeEEC
Confidence            46899999999999744  3889999999999999998644  37789999999999999997 3 45888999999999


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCcccccccccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSC  191 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~~~~~  191 (664)
                      ++|++++. + .+..+++|++|++++|++++ +|....+
T Consensus       315 s~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~-l~~l~~l  350 (384)
T d2omza2         315 YFNNISDI-S-PVSSLTKLQRLFFANNKVSD-VSSLANL  350 (384)
T ss_dssp             CSSCCSCC-G-GGGGCTTCCEEECCSSCCCC-CGGGGGC
T ss_pred             CCCCCCCC-c-ccccCCCCCEEECCCCCCCC-ChhHcCC
Confidence            99999975 3 38899999999999999986 4544333

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.59  E-value=6.9e-08  Score=90.99  Aligned_cols=103  Identities=17%  Similarity=0.274  Sum_probs=89.0

Q ss_pred             cEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecc
Q 006019           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~  153 (664)
                      .++.|+++++.++. ++ .+..+++|+.|+|++|.+++ ++ .++.+++|++|++++|++++ +| .+..+++|+.|+++
T Consensus        47 ~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred             CccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccccc-cc-cccccccccccccc
Confidence            68899999999885 33 48899999999999999997 44 37899999999999999995 66 58889999999999


Q ss_pred             cCcccccCCccccCCCCCCEeeCCCCccccc
Q 006019          154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  184 (664)
Q Consensus       154 ~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~  184 (664)
                      +|.+. .+ +.+..++.|+.++++.|.+++.
T Consensus       121 ~~~~~-~~-~~l~~l~~l~~l~~~~n~l~~~  149 (210)
T d1h6ta2         121 HNGIS-DI-NGLVHLPQLESLYLGNNKITDI  149 (210)
T ss_dssp             TSCCC-CC-GGGGGCTTCCEEECCSSCCCCC
T ss_pred             ccccc-cc-cccccccccccccccccccccc
Confidence            99986 33 4688999999999999999864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.1e-07  Score=91.55  Aligned_cols=108  Identities=11%  Similarity=0.159  Sum_probs=74.2

Q ss_pred             CccceeEecCCcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCc-cc
Q 006019           63 CSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN-DL  141 (664)
Q Consensus        63 C~w~gv~C~~~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~-~~  141 (664)
                      |.+..|.|..          .+++ .+|+.+.  +++++|+|++|.++...+..|.++++|++|+|++|.+...+|. .+
T Consensus         8 C~~~~i~c~~----------~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f   74 (242)
T d1xwdc1           8 CSNRVFLCQE----------SKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF   74 (242)
T ss_dssp             ECSSEEEEES----------CSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSE
T ss_pred             CcCCEEEEeC----------CCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccc
Confidence            5566667753          3444 5665443  4677888888888754444577788888888888887766654 46


Q ss_pred             cCCcccceeeccc-CcccccCCccccCCCCCCEeeCCCCcccc
Q 006019          142 GINHSLTILLLDN-NDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (664)
Q Consensus       142 ~~~~~L~~l~l~~-N~~~g~iP~~~~~l~~L~~l~l~~n~l~g  183 (664)
                      ..+++++.+++.. |++....+..+.++++|+++++++|++..
T Consensus        75 ~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1          75 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             ESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCS
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhcc
Confidence            6777778777653 56666666667788888888888887764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.48  E-value=1.1e-07  Score=90.67  Aligned_cols=104  Identities=24%  Similarity=0.371  Sum_probs=83.7

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .++..++++++...+.  ..+...+.+..+.++++.+....+  +..+++|+.|++++|.+++..  .++++++|+.|+|
T Consensus       107 ~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~L  180 (227)
T d1h6ua2         107 QSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKA  180 (227)
T ss_dssp             TTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEEC
T ss_pred             cccccccccccccccc--chhccccchhhhhchhhhhchhhh--hccccccccccccccccccch--hhcccccceeccc
Confidence            3678889988877653  346778889999999998876443  677889999999999987533  4788999999999


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  184 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~  184 (664)
                      ++|++++ +|+ +.++++|++|+|++|++++-
T Consensus       181 s~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~i  210 (227)
T d1h6ua2         181 DDNKISD-ISP-LASLPNLIEVHLKNNQISDV  210 (227)
T ss_dssp             CSSCCCC-CGG-GGGCTTCCEEECTTSCCCBC
T ss_pred             CCCccCC-Chh-hcCCCCCCEEECcCCcCCCC
Confidence            9999985 543 88999999999999999863

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.46  E-value=2.7e-09  Score=99.92  Aligned_cols=91  Identities=22%  Similarity=0.342  Sum_probs=79.2

Q ss_pred             cccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeecccCcccccCCccccC
Q 006019           88 TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYK  167 (664)
Q Consensus        88 ~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~N~~~g~iP~~~~~  167 (664)
                      .++.++..|++|+.|+|++|.++ .++ .+..|++|+.|+|++|+++ .+|.....+++|+.|++++|+++. ++ .+.+
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~-~~~~  113 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEK  113 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HH-HHHH
T ss_pred             hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-cc-cccc
Confidence            35567999999999999999998 565 5889999999999999998 688766667889999999999984 43 5889


Q ss_pred             CCCCCEeeCCCCcccc
Q 006019          168 LQVLSESQVDEGQLSS  183 (664)
Q Consensus       168 l~~L~~l~l~~n~l~g  183 (664)
                      +++|+.|++++|+++.
T Consensus       114 l~~L~~L~L~~N~i~~  129 (198)
T d1m9la_         114 LVNLRVLYMSNNKITN  129 (198)
T ss_dssp             HHHSSEEEESEEECCC
T ss_pred             cccccccccccchhcc
Confidence            9999999999999974

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.36  E-value=4.8e-07  Score=86.01  Aligned_cols=106  Identities=21%  Similarity=0.282  Sum_probs=87.5

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .++..++++++.++ .++ .+..+++|+.++++++...+..  .+...+.+..+.++.+.+....  .+..+++|+.|++
T Consensus        85 ~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l  158 (227)
T d1h6ua2          85 TKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSI  158 (227)
T ss_dssp             CSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEEC
T ss_pred             cccccccccccccc-ccc-cccccccccccccccccccccc--hhccccchhhhhchhhhhchhh--hhccccccccccc
Confidence            47888999998877 454 5889999999999999988643  3667889999999999988643  4778899999999


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      ++|.+++..  .+.++++|+.|+|++|++++ +|.
T Consensus       159 ~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~~  190 (227)
T d1h6ua2         159 GNAQVSDLT--PLANLSKLTTLKADDNKISD-ISP  190 (227)
T ss_dssp             CSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CGG
T ss_pred             cccccccch--hhcccccceecccCCCccCC-Chh
Confidence            999987543  38899999999999999986 454

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.33  E-value=5.8e-07  Score=90.84  Aligned_cols=101  Identities=26%  Similarity=0.328  Sum_probs=83.3

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++++|+ .+|..   +++|++|+|++|+|+ .+|..+   .+|+.|++++|+++ .++. +  .++|++|++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSD-L--PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCS-C--CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhh-h--ccccccccc
Confidence            46889999999998 58853   578999999999998 788754   57999999999988 4553 2  246999999


Q ss_pred             ccCcccccCCccccCCCCCCEeeCCCCcccccccc
Q 006019          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (664)
Q Consensus       153 ~~N~~~g~iP~~~~~l~~L~~l~l~~n~l~g~~p~  187 (664)
                      ++|.++ .+|. ++++++|++|++++|.+++..+.
T Consensus       106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~~~  138 (353)
T d1jl5a_         106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLPDL  138 (353)
T ss_dssp             CSSCCS-SCCC-CTTCTTCCEEECCSSCCSCCCCC
T ss_pred             cccccc-cccc-hhhhccceeeccccccccccccc
Confidence            999998 6774 68999999999999999865543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1.2e-06  Score=83.88  Aligned_cols=109  Identities=17%  Similarity=0.185  Sum_probs=85.8

Q ss_pred             cEEEEEeCCCCccccccc-cccCCCCCCEEEccCCcccccCCc-ccCCCCCCCEEEeec-CcccccCCccccCCccccee
Q 006019           74 KVVNLNLKDLCLEGTLAP-EIQSLTHIKSIILRNNSFSGIIPE-GFGELEELEVLDFGH-NNFSGPLPNDLGINHSLTIL  150 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~-~~~~l~~L~~l~L~~N~l~g~ip~-~~~~l~~L~~L~l~~-N~l~g~ip~~~~~~~~L~~l  150 (664)
                      +++.|+|++|.++. +|+ .+.++++|++|+|++|.+...+|. .|.++++++.+++.. |++....+..+.++++|+.|
T Consensus        30 ~l~~L~Ls~n~i~~-l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          30 NAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             CCSEEEEESCCCCE-ECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCEEECcCCcCCc-cChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            68999999999985 554 689999999999999999887764 578899999999874 78887777888999999999


Q ss_pred             ecccCcccccCCc-cccCCCCCCEeeCCCCcccc
Q 006019          151 LLDNNDFVGSLSP-EIYKLQVLSESQVDEGQLSS  183 (664)
Q Consensus       151 ~l~~N~~~g~iP~-~~~~l~~L~~l~l~~n~l~g  183 (664)
                      ++++|++...-+. .+..++.|..+..+++++..
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~  142 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT  142 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCE
T ss_pred             ccchhhhccccccccccccccccccccccccccc
Confidence            9999999743222 23345556555666666553

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=6.6e-07  Score=93.75  Aligned_cols=110  Identities=18%  Similarity=0.231  Sum_probs=86.8

Q ss_pred             cEEEEEeCCCCcccc-ccccccCCCCCCEEEccCCcccc----cCCcccCCCCCCCEEEeecCccccc----CCcccc-C
Q 006019           74 KVVNLNLKDLCLEGT-LAPEIQSLTHIKSIILRNNSFSG----IIPEGFGELEELEVLDFGHNNFSGP----LPNDLG-I  143 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~-ip~~~~~l~~L~~l~L~~N~l~g----~ip~~~~~l~~L~~L~l~~N~l~g~----ip~~~~-~  143 (664)
                      +|+.||++.+++++. +..-+..+++|+.|+|++|.++-    .|...+..+++|+.|||++|+++..    +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            589999999999863 23345668899999999999873    4566678899999999999998631    222222 2


Q ss_pred             CcccceeecccCccccc----CCccccCCCCCCEeeCCCCcccc
Q 006019          144 NHSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLSS  183 (664)
Q Consensus       144 ~~~L~~l~l~~N~~~g~----iP~~~~~l~~L~~l~l~~n~l~g  183 (664)
                      ..+|+.|+|++|+++..    ++..+..+++|++|+|++|.++.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            35799999999999753    56778899999999999999874

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.91  E-value=3.5e-05  Score=74.22  Aligned_cols=132  Identities=12%  Similarity=0.096  Sum_probs=82.8

Q ss_pred             cCC-CeEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC-CCcccceEEEEecCCCceeEEEEEecCC
Q 006019          380 SSP-IGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN-HKNFVNLIGFCEEEEPFTRMMVFEYAPN  457 (664)
Q Consensus       380 ~G~-~G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~~~lV~Ey~~~  457 (664)
                      +|. ...||+... ++..+.+|+........     ...+.+|...+..+. +--+.++++++...+  ..++||+++++
T Consensus        23 ~G~s~~~v~rv~~-~~~~~vlk~~~~~~~~~-----~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~--~~~lv~~~l~G   94 (263)
T d1j7la_          23 EGMSPAKVYKLVG-ENENLYLKMTDSRYKGT-----TYDVEREKDMMLWLEGKLPVPKVLHFERHDG--WSNLLMSEADG   94 (263)
T ss_dssp             CCCSSSEEEEEEC-SSCEEEEEEECGGGTTS-----TTCHHHHHHHHHHHTTTSCCCCEEEEEEETT--EEEEEEECCSS
T ss_pred             CCCCCCcEEEEEe-CCCeEEEEEcCCCcccc-----hhhHHHHHHHHHHHhccCCCCcEEEEEecCC--ceEEEEEeccc
Confidence            344 468999875 44556677765433222     224667888877664 434667788877665  67899999999


Q ss_pred             CChhhhhcccCCCCCCHHHHHHHHHHHHHHHHHhhcC-------------------------------------------
Q 006019          458 GTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL-------------------------------------------  494 (664)
Q Consensus       458 GsL~~~l~~~~~~~l~~~~~~~ia~~ia~gL~yLH~~-------------------------------------------  494 (664)
                      ..+.+.....    .   ...+++.++++.++.||+.                                           
T Consensus        95 ~~~~~~~~~~----~---~~~~~~~~l~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (263)
T d1j7la_          95 VLCSEEYEDE----Q---SPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDP  167 (263)
T ss_dssp             EEHHHHTTTC----S---CHHHHHHHHHHHHHHHHTSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCCGGGGSTTCSCSSH
T ss_pred             cccccccccc----c---cHHHHHHHHHHHHHHHhccCccccccCcchhhhhhhHHHHHHHHhhhhhhhcccccccchHH
Confidence            8775433210    0   1122333334444444421                                           


Q ss_pred             --------------CCCeEEeCcCCCCeEecCCCceEecccCchhh
Q 006019          495 --------------NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNE  526 (664)
Q Consensus       495 --------------~~~ivHrDLk~~NILld~~~~~kl~DfGla~~  526 (664)
                                    .+.++|+|+.+.|||++++...-|.||+.+..
T Consensus       168 ~~~~~~l~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDwe~a~~  213 (263)
T d1j7la_         168 RELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR  213 (263)
T ss_dssp             HHHHHHHHHSCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             HHHHHHHHhcCCcCCcEEEEeeccCcceeecCCceEEEeechhccc
Confidence                          11378999999999999887778999987553

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.81  E-value=4.8e-05  Score=72.78  Aligned_cols=139  Identities=9%  Similarity=0.074  Sum_probs=81.6

Q ss_pred             ccccCCC-eEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccC--CCcccceEEEEecCCCceeEEEEE
Q 006019          377 VIGSSPI-GTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVN--HKNFVNLIGFCEEEEPFTRMMVFE  453 (664)
Q Consensus       377 ~iG~G~~-G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~--H~niv~l~g~~~~~~~~~~~lV~E  453 (664)
                      .+..|.. +.||+...+++..+.+|.-.....        .++..|+..++.+.  .-.+.++++++.+.+  ..++|||
T Consensus        17 ~~~~G~s~~~v~r~~~~~~~~~vlK~~~~~~~--------~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~--~~~~v~~   86 (255)
T d1nd4a_          17 QQTIGCSDAAVFRLSAQGRPVLFVKTDLSGAL--------NELQDEAARLSWLATTGVPCAAVLDVVTEAG--RDWLLLG   86 (255)
T ss_dssp             ECSCTTSSCEEEEEECTTSCCEEEEEECSCTT--------SCHHHHHHHHHHHHTTTCCBCCEEEEEECSS--CEEEEEE
T ss_pred             EcCCcccCCeEEEEEeCCCCEEEEEeCCccCH--------hHHHHHHHHHHHHHhcCCCCCceeeeccccc--ceEEEEE
Confidence            3455554 679999988888888886543321        23667777777664  333566788777665  5689999


Q ss_pred             ecCCCChhhh-----------------hcccC--CC--CCCHHHHHHHH--------------------HHHHHHHHHhh
Q 006019          454 YAPNGTLFEH-----------------IHIKE--SE--HLDWGMRLRIA--------------------MGMAYCLEHMH  492 (664)
Q Consensus       454 y~~~GsL~~~-----------------l~~~~--~~--~l~~~~~~~ia--------------------~~ia~gL~yLH  492 (664)
                      |+++-++.+.                 ||...  ..  .-.+.....-.                    ......+..+.
T Consensus        87 ~i~G~~~~~~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  166 (255)
T d1nd4a_          87 EVPGQDLLSSHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLK  166 (255)
T ss_dssp             CCSSEETTTSCCCHHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHHH
T ss_pred             eeeccccccccccHHHHHHHHHHHHHHHccCChhhCCCcccchhhHHHHHHHHHHhhhccccccchhhhhHHHHHHHHHH
Confidence            9988665331                 11100  00  00111110000                    00111222232


Q ss_pred             cC-----CCCeEEeCcCCCCeEecCCCceEecccCchh
Q 006019          493 QL-----NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN  525 (664)
Q Consensus       493 ~~-----~~~ivHrDLk~~NILld~~~~~kl~DfGla~  525 (664)
                      +.     .+.++|+|+.+.|||++++..+-|.||+.+.
T Consensus       167 ~~~~~~~~~~liHgD~~~~Nvl~~~~~~~~iID~~~~~  204 (255)
T d1nd4a_         167 ARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLG  204 (255)
T ss_dssp             HTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred             HhCCccCCceEEeCCCCCcceEEeCCceEEEEEchhcc
Confidence            11     1237999999999999988778899998654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.72  E-value=5.1e-05  Score=75.89  Aligned_cols=78  Identities=24%  Similarity=0.308  Sum_probs=63.9

Q ss_pred             CcEEEEEeCCCCccccccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCcccccCCccccCCcccceeec
Q 006019           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (664)
Q Consensus        73 ~~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l  152 (664)
                      .+++.|+|++|+|+ .+|..   +.+|+.|++++|.++ .++. +  .+.|++|++++|.++ .+|. ++.+++|+.|++
T Consensus        58 ~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l  127 (353)
T d1jl5a_          58 PHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD-L--PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDV  127 (353)
T ss_dssp             TTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS-C--CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh-h--ccccccccccccccc-cccc-hhhhccceeecc
Confidence            47899999999999 78865   457899999999987 4543 2  146999999999998 5774 688999999999


Q ss_pred             ccCccccc
Q 006019          153 DNNDFVGS  160 (664)
Q Consensus       153 ~~N~~~g~  160 (664)
                      ++|.+++.
T Consensus       128 ~~~~~~~~  135 (353)
T d1jl5a_         128 DNNSLKKL  135 (353)
T ss_dssp             CSSCCSCC
T ss_pred             cccccccc
Confidence            99988743

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=4.3e-06  Score=74.74  Aligned_cols=68  Identities=19%  Similarity=0.280  Sum_probs=34.1

Q ss_pred             cCCCCCCEEEccCCccccc--CCcccCCCCCCCEEEeecCcccccCCc-cccCCcccceeecccCcccccCC
Q 006019           94 QSLTHIKSIILRNNSFSGI--IPEGFGELEELEVLDFGHNNFSGPLPN-DLGINHSLTILLLDNNDFVGSLS  162 (664)
Q Consensus        94 ~~l~~L~~l~L~~N~l~g~--ip~~~~~l~~L~~L~l~~N~l~g~ip~-~~~~~~~L~~l~l~~N~~~g~iP  162 (664)
                      ..++.|+.|+|++|.++..  ++..+..+++|+.|+|++|+++. ++. ......+|+.|++++|.++....
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~-l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC-GGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc-chhhhhhhccccceeecCCCCcCcCcc
Confidence            3455566666666666532  23334455556666666666552 222 12223345555566555554433

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.67  E-value=5.8e-06  Score=83.57  Aligned_cols=66  Identities=26%  Similarity=0.279  Sum_probs=27.9

Q ss_pred             ccCCCCCCEEEccCCccccc-----CCcccCCCCCCCEEEeecCccccc----CCccccCCcccceeecccCccc
Q 006019           93 IQSLTHIKSIILRNNSFSGI-----IPEGFGELEELEVLDFGHNNFSGP----LPNDLGINHSLTILLLDNNDFV  158 (664)
Q Consensus        93 ~~~l~~L~~l~L~~N~l~g~-----ip~~~~~l~~L~~L~l~~N~l~g~----ip~~~~~~~~L~~l~l~~N~~~  158 (664)
                      +...+.|+.|+|++|.++..     +...+..+++|+.|+|++|.++..    +...+..+++|++|+|++|.++
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            33444444555544444321     122334444444555544444321    2223334444444555444443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=1.2e-06  Score=78.44  Aligned_cols=93  Identities=17%  Similarity=0.117  Sum_probs=67.1

Q ss_pred             cccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEeecCccccc--CCccccCCcccceeecccCcccccCCc-cccCC
Q 006019           92 EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP--LPNDLGINHSLTILLLDNNDFVGSLSP-EIYKL  168 (664)
Q Consensus        92 ~~~~l~~L~~l~L~~N~l~g~ip~~~~~l~~L~~L~l~~N~l~g~--ip~~~~~~~~L~~l~l~~N~~~g~iP~-~~~~l  168 (664)
                      .+..+..+..+++.+|.. ..++.....++.|++|+|++|+++.-  ++..+..+++|+.|+|++|.++. +++ ...+.
T Consensus        37 ~l~~~~~~~~l~~~~~~~-~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~-l~~l~~l~~  114 (162)
T d1koha1          37 DLVAQNIDVVLNRRSSMA-ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKG  114 (162)
T ss_dssp             TTTTTTCCCCTTSHHHHH-HHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC-GGGHHHHTT
T ss_pred             hhhhccchhhcchhhhHh-hhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc-chhhhhhhc
Confidence            344455555555555443 34454456789999999999999852  34456789999999999999984 443 34455


Q ss_pred             CCCCEeeCCCCccccccc
Q 006019          169 QVLSESQVDEGQLSSAAK  186 (664)
Q Consensus       169 ~~L~~l~l~~n~l~g~~p  186 (664)
                      ..|+.|++++|.+++...
T Consensus       115 ~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1         115 LKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             CCCSSCCCTTSTTSSSSS
T ss_pred             cccceeecCCCCcCcCcc
Confidence            679999999999987654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=7.5e-06  Score=80.38  Aligned_cols=59  Identities=20%  Similarity=0.224  Sum_probs=28.2

Q ss_pred             CCCCCEEEccCCccccc-CCcccCCCCCCCEEEeecCcccccCCccccCCcccceeeccc
Q 006019           96 LTHIKSIILRNNSFSGI-IPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN  154 (664)
Q Consensus        96 l~~L~~l~L~~N~l~g~-ip~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~L~~l~l~~  154 (664)
                      ..+|++|+|+++.++.. ++..+..+++|++|+|+++.+++..+..++.+++|+.|+|++
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            34455555555544433 223344455555555555555444444444455555555544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=8.5e-06  Score=80.00  Aligned_cols=33  Identities=21%  Similarity=0.336  Sum_probs=16.4

Q ss_pred             cEEEEEeCCCCccccccccccCCCCCCEEEccC
Q 006019           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRN  106 (664)
Q Consensus        74 ~v~~l~L~~~~l~g~ip~~~~~l~~L~~l~L~~  106 (664)
                      +++.|+|+++.+++..+..++.+++|+.|+|++
T Consensus        72 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          72 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             CcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            444555555554444444445555555555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=9.1e-06  Score=84.72  Aligned_cols=113  Identities=20%  Similarity=0.226  Sum_probs=79.5

Q ss_pred             CCcEEEEEeCCCCccccccccc-----cCCCCCCEEEccCCcccccCC----cccCCCCCCCEEEeecCccccc----CC
Q 006019           72 DGKVVNLNLKDLCLEGTLAPEI-----QSLTHIKSIILRNNSFSGIIP----EGFGELEELEVLDFGHNNFSGP----LP  138 (664)
Q Consensus        72 ~~~v~~l~L~~~~l~g~ip~~~-----~~l~~L~~l~L~~N~l~g~ip----~~~~~l~~L~~L~l~~N~l~g~----ip  138 (664)
                      ...+..+++++|.++..-...+     ...+.|+.+++++|.++..-.    ..+....+|+.|+|++|+++..    ++
T Consensus       282 ~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~  361 (460)
T d1z7xw1         282 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC  361 (460)
T ss_dssp             CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHH
T ss_pred             cccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhh
Confidence            3577888899888864322221     234678899999988875532    2334566899999999988753    33


Q ss_pred             cccc-CCcccceeecccCcccc----cCCccccCCCCCCEeeCCCCccccc
Q 006019          139 NDLG-INHSLTILLLDNNDFVG----SLSPEIYKLQVLSESQVDEGQLSSA  184 (664)
Q Consensus       139 ~~~~-~~~~L~~l~l~~N~~~g----~iP~~~~~l~~L~~l~l~~n~l~g~  184 (664)
                      ..+. ..+.|++|+|++|+++.    .|+..+..+++|++|+|++|+++..
T Consensus       362 ~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~  412 (460)
T d1z7xw1         362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  412 (460)
T ss_dssp             HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             hhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHH
Confidence            3443 35678999999998874    3566677788999999999998753

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.51  E-value=1.4e-05  Score=80.69  Aligned_cols=112  Identities=21%  Similarity=0.239  Sum_probs=74.3

Q ss_pred             CcEEEEEeCCCCcc--c--ccc---------ccccCCCCCCEEEccCCccccc----CCcccCCCCCCCEEEeecCcccc
Q 006019           73 GKVVNLNLKDLCLE--G--TLA---------PEIQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSG  135 (664)
Q Consensus        73 ~~v~~l~L~~~~l~--g--~ip---------~~~~~l~~L~~l~L~~N~l~g~----ip~~~~~l~~L~~L~l~~N~l~g  135 (664)
                      .+++.|+|++|.++  |  .+.         ......+.|+.+++++|.++..    +...+..++.|+.|+|++|+++.
T Consensus       121 ~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  200 (344)
T d2ca6a1         121 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP  200 (344)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCH
T ss_pred             ccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccc
Confidence            57788888887753  1  111         1124566788888888877522    34445567788888888887763


Q ss_pred             c-----CCccccCCcccceeecccCccccc----CCccccCCCCCCEeeCCCCccccc
Q 006019          136 P-----LPNDLGINHSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLSSA  184 (664)
Q Consensus       136 ~-----ip~~~~~~~~L~~l~l~~N~~~g~----iP~~~~~l~~L~~l~l~~n~l~g~  184 (664)
                      .     +...+..+++|+.|+|++|.++..    +...+..+++|++|+|++|.+++.
T Consensus       201 ~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~  258 (344)
T d2ca6a1         201 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR  258 (344)
T ss_dssp             HHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred             cccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCch
Confidence            2     233456677888888888887532    455567788888888888887653

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=97.28  E-value=0.00029  Score=72.04  Aligned_cols=80  Identities=14%  Similarity=0.173  Sum_probs=47.5

Q ss_pred             cccccCCCeEEEEEEECC-CcEEEEEEeeecc---cCCCchhHHHHHHHHHHHHhccC-C--CcccceEEEEecCCCcee
Q 006019          376 NVIGSSPIGTVYKGTLSN-GVEIAVASVSVAS---AKDWPKNLEVQFRKKIDTLSKVN-H--KNFVNLIGFCEEEEPFTR  448 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~-~~~vavk~~~~~~---~~~~~~~~~~~f~~E~~~l~~l~-H--~niv~l~g~~~~~~~~~~  448 (664)
                      +.||.|....||+....+ ++.+.||.-....   ...++... .+...|.+.|+.+. +  ..+.+++++..+    ..
T Consensus        32 ~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~-~R~~~E~~~L~~~~~~~p~~vP~v~~~d~~----~~  106 (392)
T d2pula1          32 QEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTI-DRARIESSALIRQGEHVPHLVPRVFYSDTE----MA  106 (392)
T ss_dssp             EECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCT-THHHHHHHHHHHHHTTCGGGSCCEEEEETT----TT
T ss_pred             EEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCH-HHHHHHHHHHHHhhhhCCCCcceEEEEcCC----CC
Confidence            568999999999998654 6678888653211   11121111 22345777776652 2  446667766543    33


Q ss_pred             EEEEEecCCCCh
Q 006019          449 MMVFEYAPNGTL  460 (664)
Q Consensus       449 ~lV~Ey~~~GsL  460 (664)
                      ++||||+++..+
T Consensus       107 ~lvmE~L~~~~~  118 (392)
T d2pula1         107 VTVMEDLSHLKI  118 (392)
T ss_dssp             EEEECCCTTSEE
T ss_pred             EEEEeccCCccc
Confidence            799999976543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.91  E-value=0.00013  Score=65.16  Aligned_cols=109  Identities=17%  Similarity=0.163  Sum_probs=71.0

Q ss_pred             CcEEEEEeCCC-Ccccc----ccccccCCCCCCEEEccCCccccc----CCcccCCCCCCCEEEeecCccccc----CCc
Q 006019           73 GKVVNLNLKDL-CLEGT----LAPEIQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGP----LPN  139 (664)
Q Consensus        73 ~~v~~l~L~~~-~l~g~----ip~~~~~l~~L~~l~L~~N~l~g~----ip~~~~~l~~L~~L~l~~N~l~g~----ip~  139 (664)
                      ..++.|+|+++ .++..    +-..+...+.|+.|+|++|.+...    +-..+...+.|+.|+|++|.++..    +-.
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            56888888864 45422    334566778888888888888643    223445567888888888887753    112


Q ss_pred             cccCCcccceeecccCcccc-------cCCccccCCCCCCEeeCCCCcc
Q 006019          140 DLGINHSLTILLLDNNDFVG-------SLSPEIYKLQVLSESQVDEGQL  181 (664)
Q Consensus       140 ~~~~~~~L~~l~l~~N~~~g-------~iP~~~~~l~~L~~l~l~~n~l  181 (664)
                      .+...++|+.|+|++|.++.       .+...+...++|+.|+++.+..
T Consensus        95 aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            34556778888888876542       1344455667888888876544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.36  E-value=0.00076  Score=59.81  Aligned_cols=90  Identities=18%  Similarity=0.168  Sum_probs=67.5

Q ss_pred             ccCCCCCCEEEccC-Cccccc----CCcccCCCCCCCEEEeecCcccccC----CccccCCcccceeecccCccccc---
Q 006019           93 IQSLTHIKSIILRN-NSFSGI----IPEGFGELEELEVLDFGHNNFSGPL----PNDLGINHSLTILLLDNNDFVGS---  160 (664)
Q Consensus        93 ~~~l~~L~~l~L~~-N~l~g~----ip~~~~~l~~L~~L~l~~N~l~g~i----p~~~~~~~~L~~l~l~~N~~~g~---  160 (664)
                      ..+.+.|+.|+|++ |.++..    +-..+...+.|+.|+|++|.+...-    -..+...+.|+.|+|++|.++..   
T Consensus        11 ~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~   90 (167)
T d1pgva_          11 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA   90 (167)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHH
Confidence            34568999999997 456532    3345777889999999999987432    23345578899999999998753   


Q ss_pred             -CCccccCCCCCCEeeCCCCccc
Q 006019          161 -LSPEIYKLQVLSESQVDEGQLS  182 (664)
Q Consensus       161 -iP~~~~~l~~L~~l~l~~n~l~  182 (664)
                       +-..+...++|++|++++|.+.
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHHHhCCcCCEEECCCCcCC
Confidence             3334667889999999998765

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=95.61  E-value=0.014  Score=57.23  Aligned_cols=69  Identities=10%  Similarity=0.042  Sum_probs=42.6

Q ss_pred             eEEEEEEECCCcEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcc--cceEEE-----EecCCCceeEEEEEecC
Q 006019          384 GTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF--VNLIGF-----CEEEEPFTRMMVFEYAP  456 (664)
Q Consensus       384 G~Vy~g~~~~~~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~ni--v~l~g~-----~~~~~~~~~~lV~Ey~~  456 (664)
                      -.||+.+.++|..+++|......-      ..+++..|.+.+..+....+  +..+..     ....+  ..+.+++|++
T Consensus        36 N~vy~v~~~dg~~~VlK~~rp~~~------s~~~i~~E~~~l~~L~~~gipv~~p~~~~g~~~~~~~~--~~~~l~~~~~  107 (325)
T d1zyla1          36 NRVYQFQDEDRRRFVVKFYRPERW------TADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQG--FYFAVFPSVG  107 (325)
T ss_dssp             SEEEEECCTTCCCEEEEEECTTTS------CHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETT--EEEEEEECCC
T ss_pred             ceeEEEEcCCCCEEEEEEeCCCCC------CHHHHHHHHHHHHHHHhcCCCCCCceecCCCeeeeeee--EEEEEEeecC
Confidence            579999999999999988753321      23567778888777643222  111111     11122  4688999998


Q ss_pred             CCCh
Q 006019          457 NGTL  460 (664)
Q Consensus       457 ~GsL  460 (664)
                      +..+
T Consensus       108 G~~~  111 (325)
T d1zyla1         108 GRQF  111 (325)
T ss_dssp             CEEC
T ss_pred             CcCC
Confidence            7444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.60  E-value=0.0014  Score=57.80  Aligned_cols=110  Identities=18%  Similarity=0.158  Sum_probs=75.1

Q ss_pred             CcEEEEEeCC-CCcccc----ccccccCCCCCCEEEccCCccccc----CCcccCCCCCCCEEEeecCccccc----CCc
Q 006019           73 GKVVNLNLKD-LCLEGT----LAPEIQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGP----LPN  139 (664)
Q Consensus        73 ~~v~~l~L~~-~~l~g~----ip~~~~~l~~L~~l~L~~N~l~g~----ip~~~~~l~~L~~L~l~~N~l~g~----ip~  139 (664)
                      ..++.|+|++ +.++..    +-..+...++|+.|+|++|.++..    +-..+...++|+.+++++|.++..    +-.
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            5788888887 445421    344566788899999999988754    223455678899999998887643    223


Q ss_pred             cccCCcccceeec--ccCcccc----cCCccccCCCCCCEeeCCCCccc
Q 006019          140 DLGINHSLTILLL--DNNDFVG----SLSPEIYKLQVLSESQVDEGQLS  182 (664)
Q Consensus       140 ~~~~~~~L~~l~l--~~N~~~g----~iP~~~~~l~~L~~l~l~~n~l~  182 (664)
                      .+...++|+.++|  +.|.+.-    .|...+.+.++|+.|+++.|+..
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCc
Confidence            4566777876444  5666643    35555668888999998877654

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.36  E-value=0.049  Score=54.75  Aligned_cols=72  Identities=14%  Similarity=0.170  Sum_probs=46.7

Q ss_pred             cccccCCCeEEEEEEECCC--------cEEEEEEeeecccCCCchhHHHHHHHHHHHHhccCCCcc-cceEEEEecCCCc
Q 006019          376 NVIGSSPIGTVYKGTLSNG--------VEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNF-VNLIGFCEEEEPF  446 (664)
Q Consensus       376 ~~iG~G~~G~Vy~g~~~~~--------~~vavk~~~~~~~~~~~~~~~~~f~~E~~~l~~l~H~ni-v~l~g~~~~~~~~  446 (664)
                      +.|+-|-.-.+|+....++        ..|.+++.- ..  .    ...+..+|..+++.+.-.++ .++++++.  +  
T Consensus        48 ~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g-~~--~----~~idr~~E~~i~~~ls~~gl~Pkll~~~~--~--  116 (395)
T d1nw1a_          48 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYF-NP--E----TESHLVAESVIFTLLSERHLGPKLYGIFS--G--  116 (395)
T ss_dssp             EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEEC-SC--C----CHHHHHHHHHHHHHHHHTTSSSCEEEEET--T--
T ss_pred             EEcCCccccceEEEEeCCCCccccCCCCcEEEEecC-Cc--c----hhhHHHHHHHHHHHHHhCCCCCeEEEEcC--C--
Confidence            5688899999999987543        345554432 11  1    12345578888887753344 47787763  2  


Q ss_pred             eeEEEEEecCCCCh
Q 006019          447 TRMMVFEYAPNGTL  460 (664)
Q Consensus       447 ~~~lV~Ey~~~GsL  460 (664)
                        .+|+||+++-.+
T Consensus       117 --g~I~efi~g~~l  128 (395)
T d1nw1a_         117 --GRLEEYIPSRPL  128 (395)
T ss_dssp             --EEEECCCCEEEC
T ss_pred             --ceEEEEeccccC
Confidence              589999987555

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.23  E-value=0.13  Score=49.43  Aligned_cols=29  Identities=24%  Similarity=0.203  Sum_probs=26.0

Q ss_pred             CeEEeCcCCCCeEecCCCceEecccCchh
Q 006019          497 PIAHNYLNSSAVHLTEDYAAKLSDLSFWN  525 (664)
Q Consensus       497 ~ivHrDLk~~NILld~~~~~kl~DfGla~  525 (664)
                      .+||+|+.+.||+++.+...-|.||+.+.
T Consensus       184 giIHgDl~~dNvl~~~~~v~gvIDF~~~~  212 (316)
T d2ppqa1         184 GVIHADLFQDNVFFLGDELSGLIDFYFAC  212 (316)
T ss_dssp             EEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             ccccCCcchhhhhcccccceeEecccccc
Confidence            49999999999999998888899999754

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.91  E-value=0.017  Score=50.40  Aligned_cols=91  Identities=16%  Similarity=0.174  Sum_probs=65.7

Q ss_pred             cccCCCCCCEEEccC-Cccccc----CCcccCCCCCCCEEEeecCcccccCC----ccccCCcccceeecccCccccc--
Q 006019           92 EIQSLTHIKSIILRN-NSFSGI----IPEGFGELEELEVLDFGHNNFSGPLP----NDLGINHSLTILLLDNNDFVGS--  160 (664)
Q Consensus        92 ~~~~l~~L~~l~L~~-N~l~g~----ip~~~~~l~~L~~L~l~~N~l~g~ip----~~~~~~~~L~~l~l~~N~~~g~--  160 (664)
                      ...+.+.|+.|+|++ |.++..    +-..+...+.|+.|+|++|.++..--    ..+...++|+.+++++|.++..  
T Consensus        12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~   91 (166)
T d1io0a_          12 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI   91 (166)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhH
Confidence            345678999999997 567532    33456678999999999998875422    2345678899999999988643  


Q ss_pred             --CCccccCCCCCCEeeC--CCCccc
Q 006019          161 --LSPEIYKLQVLSESQV--DEGQLS  182 (664)
Q Consensus       161 --iP~~~~~l~~L~~l~l--~~n~l~  182 (664)
                        +-..+...++|+.++|  +.|.+.
T Consensus        92 ~~l~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          92 LALVEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHHhCccccEEeeccCCCcCc
Confidence              3456678888987555  466664