Citrus Sinensis ID: 006089

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660--
MDGTVPSAPLDKTKVLDVKPLRSLRPVLPSSPQAPPFVCAPPFGPFPPGFSPFYPFSTPEFTPDNNQNNNTQTPPTSFATPIRSFRSPDVNFVDGSNGDLGSSDGFLDGKKRRTSSYKQKRPKNAQDSDFSVGISSFERDDGNRQVVNNVLMRFDALRRRISQIEDAKETSTGLIRRADLKASNILMSKGVRTNMRKRLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDAEDSDILIYSGQGGNANRKGEQAADQKLERGNLALERSLRRASEVRVIRGMKDAINQSSKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQPGAFALWKLIQRWKDGMSGRVGLILPDLSSGAEAIPIALINDVDDEKGPAYFTYLTTVKYSKSFRLTQPSFGCNCYSACGPGNPNCSCVQKNGGDFPYTANGVLVSRKPLIYECGPSCPCNRDCKNRVSQTGLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKARQDGEGSNEDYVFDTTRTYDSFKWNYEPGLIEDDDPSDTTEEYDLPYPLVISAKNVGNVARFMNHSCSPNVFWQPIIFENNNESFVHVAFFAMRHVPPMTELTYDYGISKSDGGNYEPHRKKKCLCGTLKCRGYFG
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccccccccEEccccccccccEEEEEEEEHHHHcccccccccEEEEEccccccccEEEEEEEccccccccccccEEEEEccccccccccccccccccccccHHHHHHHHcccccEEEEcccccccccccEEEEccEEEEEEcccccccccccEEEEcccccccccccHHHHHHHHHHcccccccccccccccccccccccEEEEEcccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccEEEEEEEEEccccEEEEEccccccccEEEEEEEEEEcHHHHHHHccccccccEEcccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccEEEEEEEcccccccEEEEEEEccccccccEEEccccccccccccccccccEEEEccccccccccc
cccccccccccccEEEccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccEEccccEEccccccEEccEEEEEEEEEEEEccccccccccEEEccccccccEEEEEEEEccccccccccccEEEEEccccccccccccHHHcHHccccHHHHHHHcccccEEEEEEEEcccccccEEEEEcccEEEEHHHHHccccccEEEEEEEEEcccccHHHHHHHHHHHHHccccccccEEEccHHcccccccEEEEEcccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccEEEccccEEEccccccccccccccccHHHcccccEEEEEcccccEEEEEcccEccccEEEEcccEEEEHHHHHHHHccccccEEEEccccccccccccccHHccccccccccccccccccEEEEcccEEcHHHHcEEcccccEEEEEEEcccccccccEEEEEEcccEccccEcEEccccccccccccccEEEEEEEccccHHccccc
mdgtvpsapldktkvldvkplrslrpvlpsspqappfvcappfgpfppgfspfypfstpeftpdnnqnnntqtpptsfatpirsfrspdvnfvdgsngdlgssdgfldgkkrrtssykqkrpknaqdsdfsvgissferddgnrqVVNNVLMRFDALRRRISQIEDAKETSTGLIRRADLKASNILMSKGVRTNMRKrlgvvpgveigDIFFFRMEMCLIGlhsqsmagIDYMitrsdldeepvAVSIIssggydddaedsdiliysgqggnanrkgeqaADQKLERGNLALERSLRRASEVRVIRGMKDAINQSSKVYVYDGLYTVQESwtekgksgcnifkyklvripgqpGAFALWKLIQRWKdgmsgrvglilpdlssgaeaipialindvddekgpayFTYLTTVKYsksfrltqpsfgcncysacgpgnpncscvqknggdfpytangvlvsrkpliyecgpscpcnrdcknrvsqtGLKVRLDVfktkdrgwglrsldpiragTFICEYAGEVVDkfkarqdgegsnedyvfdttrtydsfkwnyepgliedddpsdtteeydlpyplvISAKNVGNVArfmnhscspnvfwqpiifennnesFVHVAFFAmrhvppmteltydygisksdggnyephrkkkclcgtlkcrgyfg
mdgtvpsapldktkvldvkplrSLRPVLPSSPQAPPFVCAPPFGPFPPGFSPFYPFSTPEFTPDNNQNNNTQTPPTSFATPIRSFRSPDVNfvdgsngdlgssdgfldgkkrrtssykqkrpknaqdsdfsvgissferddgnrqvvNNVLMRFDALRRRISqiedaketstglirradlkasnilmskgvrtnmrkrlgvvpGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSggydddaeDSDILIYsgqggnanrkgeqaadqklergnlalerslrrasevrvirgmkdainqsskvyvYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQPGAFALWKLIQRWKDGMSGRVGLILPDLSSGAEAIPIAlindvddekgPAYFTYLTTVKYSKSFRLTQPSFGCNCYSACGPGNPNCSCVQKNGGDFPYTANGVLVSRKPLIYECGpscpcnrdcknrvsqtglkvrldvfktkdrgwglrsldpiraGTFICEYAGEVVDKfkarqdgegsnedyvfdtTRTYDSFKWNYEPGLIEDDDPSDTTEEYDLPYPLVISAKNVGNVARFMNHSCSPNVFWQPIIFENNNESFVHVAFFAMRHVPPMTELTYDYGISKsdggnyephrkkkclcgtlkcrgyfg
MDGTVPSAPLDKTKVLDVKPLRSLRPVLPSSPQAppfvcappfgpfppgfspfypfstpEFtpdnnqnnntqtpptSFATPIRSFRSPDVNFVdgsngdlgssdgfldgKKRRTSSYKQKRPKNAQDSDFSVGISSFERDDGNRQVVNNVLMRFDALRRRISQIEDAKETSTGLIRRADLKASNILMSKGVRTNMRKRLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDAEDSDILIYSGQGGNANRKGEQAADQKLERGNLALERSLRRASEVRVIRGMKDAINQSSKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQPGAFALWKLIQRWKDGMSGRVGLILPDLSSGAEAIPIALINDVDDEKGPAYFTYLTTVKYSKSFRLTQPSFGCNCYSACGPGNPNCSCVQKNGGDFPYTANGVLVSRKPLIYECGPSCPCNRDCKNRVSQTGLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKARQDGEGSNEDYVFDTTRTYDSFKWNYEPGLIEDDDPSDTTEEYDLPYPLVISAKNVGNVARFMNHSCSPNVFWQPIIFENNNESFVHVAFFAMRHVPPMTELTYDYGISKSDGGNYEPHRKKKCLCGTLKCRGYFG
************************************FVCAPPFGPF**GFSPFY******************************************************************************************QVVNNVLMRFDALRRRISQI*******TGLIRRADLKASNILMSKGVRTNMRKRLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGY********ILIY***********************************VRVIRGMKDAINQSSKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQPGAFALWKLIQRWKDGMSGRVGLILPDLSSGAEAIPIALINDVDDEKGPAYFTYLTTVKYSKSFRLTQPSFGCNCYSACGPGNPNCSCVQKNGGDFPYTANGVLVSRKPLIYECGPSCPCNRDCKNRVSQTGLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKAR******NEDYVFDTTRTYDSFKWNYEPGLIE********EEYDLPYPLVISAKNVGNVARFMNHSCSPNVFWQPIIFENNNESFVHVAFFAMRHVPPMTELTYDYGISKSDGGNYEPHRKKKCLCGTLKCRGY**
***************LDVKPLRSLRPVLPSSPQAPPFVCAPPFGPF******************************************************************************************************NVLMRFDALRRRI*******************KASNILMSKGVRTNMRKRLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDAEDSDILIYSGQGG***********QKLERGNLALERSLRRASEVRVIRGMK********VYVYDGLYTVQESWTEKG***CNIFKYKLVRIPGQPGAFALWKLIQRWKDGMSGRVGLILPDLSSGAEAIPIALINDVDDEKGPAYFTYLTTVKYSKSFRLTQPSFGCNCYSACGPGNPNCSCVQKNGGDFPYTANGVLVSRKPLIYECGPSCPCNRDCKNRVSQTGLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKARQDGEGSNEDYVFDTTRTYDSFKWNYEPGLIEDDDPSDTTEEYDLPYPLVISAKNVGNVARFMNHSCSPNVFWQPIIFENNNESFVHVAFFAMRHVPPMTELTYDYGISKSDGG*YEPHRKKKCLCGTLKCRGYFG
********PLDKTKVLDVKPLRSLRPVLPSSPQAPPFVCAPPFGPFPPGFSPFYPFSTPEFTPDNNQNNNTQTPPTSFATPIRSFRSPDVNFVDGSNGDLGSSDGFLDGKKRR***************DFSVGISSFERDDGNRQVVNNVLMRFDALRRRISQIEDAKETSTGLIRRADLKASNILMSKGVRTNMRKRLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDAEDSDILIYSGQG*************KLERGNLALERSLRRASEVRVIRGMKDAINQSSKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQPGAFALWKLIQRWKDGMSGRVGLILPDLSSGAEAIPIALINDVDDEKGPAYFTYLTTVKYSKSFRLTQPSFGCNCYSACGPGNPNCSCVQKNGGDFPYTANGVLVSRKPLIYECGPSCPCNRDCKNRVSQTGLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKARQDGEGSNEDYVFDTTRTYDSFKWNYEPGLIEDDDPSDTTEEYDLPYPLVISAKNVGNVARFMNHSCSPNVFWQPIIFENNNESFVHVAFFAMRHVPPMTELTYDYGISKSDGGNYEPHRKKKCLCGTLKCRGYFG
**********DKTKVLDVKPLRSLRPVLPSSPQAPPFVCAPPFGPFPPGFSP****************************************************************************************DGNRQVVNNVLMRFDALRRRISQIEDAKETS*GLIRRADLKASNILMSKGVRTNMRKRLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDAEDSDILIYSGQGGNANRKGEQAADQKLERGNLALERSLRRASEVRVIRGMKDAINQSSKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQPGAFALWKLIQRWKDGMSGRVGLILPDLSSGAEAIPIALINDVDDEKGPAYFTYLTTVKYSKSFRLTQPSFGCNCYSACGPGNPNCSCVQKNGGDFPYTANGVLVSRKPLIYECGPSCPCNRDCKNRVSQTGLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKARQDGEGSNEDYVFDTTRTYDSFKWNYEPGLIED**PSDTTEEYDLPYPLVISAKNVGNVARFMNHSCSPNVFWQPIIFENNNESFVHVAFFAMRHVPPMTELTYDYGISKSDGGNYEPHRKKKCLCGTLKC*****
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MDGTVPSAPLDKTKVLDVKPLRSLRPVLPSSPQAPPFVCAPPFGPFPPGFSPFYPFSTPEFTPDNNQNNNTQTPPTSFATPIRSFRSPDVNFVDGSNGDLGSSDGFLDGKKRRTSSYKQKRPKNAQDSDFSVGISSFERDDGNRQVVNNVLMRFDALRRRISQIEDAKETSTGLIRRADLKASNILMSKGVRTNMRKRLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDAEDSDILIYSGQGGNANRKGEQAADQKLERGNLALERSLRRASEVRVIRGMKDAINQSSKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQPGAFALWKLIQRWKDGMSGRVGLILPDLSSGAEAIPIALINDVDDEKGPAYFTYLTTVKYSKSFRLTQPSFGCNCYSACGPGNPNCSCVQKNGGDFPYTANGVLVSRKPLIYECGPSCPCNRDCKNRVSQTGLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKARQDGEGSNEDYVFDTTRTYDSFKWNYEPGLIEDDDPSDTTEEYDLPYPLVISAKNVGNVARFMNHSCSPNVFWQPIIFENNNESFVHVAFFAMRHVPPMTELTYDYGISKSDGGNYEPHRKKKCLCGTLKCRGYFG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query662 2.2.26 [Sep-21-2011]
Q9C5P4669 Histone-lysine N-methyltr yes no 0.959 0.949 0.576 0.0
Q9FF80670 Histone-lysine N-methyltr no no 0.962 0.950 0.600 0.0
Q93YF5704 Histone-lysine N-methyltr N/A no 0.950 0.893 0.517 0.0
Q9C5P1693 Histone-lysine N-methyltr no no 0.936 0.894 0.418 1e-141
Q9C5P0755 Histone-lysine N-methyltr no no 0.809 0.709 0.442 1e-134
Q8VZ17790 Histone-lysine N-methyltr no no 0.753 0.631 0.414 1e-102
O82175794 Histone-lysine N-methyltr no no 0.725 0.604 0.415 1e-101
Q9T0G7650 Probable histone-lysine N no no 0.761 0.775 0.397 3e-97
O22781651 Histone-lysine N-methyltr no no 0.749 0.761 0.379 1e-94
Q8GZB6624 Histone-lysine N-methyltr no no 0.714 0.758 0.358 6e-80
>sp|Q9C5P4|SUVH3_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 OS=Arabidopsis thaliana GN=SUVH3 PE=2 SV=2 Back     alignment and function desciption
 Score =  800 bits (2066), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/670 (57%), Positives = 498/670 (74%), Gaps = 35/670 (5%)

Query: 11  DKTKVLDVKPLRSLRPVLPSSPQAPPFVCAPPFGPFPPGFSPFYPFSTPE---FTPDNNQ 67
           DK+ VLD+KPLRSL+PV P+  Q PPFV  PPFGP    +S F+PF   +    TPD NQ
Sbjct: 17  DKSIVLDIKPLRSLKPVFPNGNQGPPFVGCPPFGPSSSEYSSFFPFGAQQPTHDTPDLNQ 76

Query: 68  NNNTQTPPTSFATPIRSFRSPDVNFVDGSNGDLGSSDGFLDGKKRRTSSYKQKRPKNAQD 127
             NT  P  SF  P+RS+R+P     +G +   G+  G   G+ + T+S K+K  K   +
Sbjct: 77  TQNTPIP--SFVPPLRSYRTPTK--TNGPSSSSGTKRGV--GRPKGTTSVKKKEKKTVAN 130

Query: 128 -------------SDFSVGISSFERDDGNRQVVNNVLMRFDALRRRISQIEDAKETSTGL 174
                        SDF  GIS+ ER+DGN  +V++VLMRFDA+RRR+SQ+E  K  ++  
Sbjct: 131 EPNLDVQVVKKFSSDFDSGISAAEREDGNAYLVSSVLMRFDAVRRRLSQVEFTKSATS-- 188

Query: 175 IRRADLKASNILMSKGVRTNMRKRLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMI 234
                 KA+  LMS GVRTNM+KR+G VPG+E+GDIFF R+EMCL+GLH Q+MAGIDY+I
Sbjct: 189 ------KAAGTLMSNGVRTNMKKRVGTVPGIEVGDIFFSRIEMCLVGLHMQTMAGIDYII 242

Query: 235 TRSDLDEEPVAVSIISSGGYDDDAEDSDILIYSGQGGNANRKGEQAADQKLERGNLALER 294
           +++  DEE +A SI+SSG Y+ +A+D + LIYSGQGGNA+ K  QA+DQKLERGNLALE 
Sbjct: 243 SKAGSDEESLATSIVSSGRYEGEAQDPESLIYSGQGGNAD-KNRQASDQKLERGNLALEN 301

Query: 295 SLRRASEVRVIRGMKDAINQSSKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQPG 354
           SLR+ + VRV+RG +DA +++ K+Y+YDGLY++ ESW EKGKSGCN FKYKLVR PGQP 
Sbjct: 302 SLRKGNGVRVVRGEEDAASKTGKIYIYDGLYSISESWVEKGKSGCNTFKYKLVRQPGQPP 361

Query: 355 AFALWKLIQRWKDGMSGRVGLILPDLSSGAEAIPIALINDVDDEKGPAYFTYLTTVKYSK 414
           AF  WK +Q+WK+G++ R GLILPDL+SGAE+ P++L+NDVD++KGPAYFTY +++KYS+
Sbjct: 362 AFGFWKSVQKWKEGLTTRPGLILPDLTSGAESKPVSLVNDVDEDKGPAYFTYTSSLKYSE 421

Query: 415 SFRLTQPSFGCNCYSACGPGNPNCSCVQKNGGDFPYTANGVLVSRKPLIYECGPSCPCNR 474
           +F+LTQP  GC+C  +C PGN NCSC++KN GD PY    +LVSR+P+IYECGP+CPC+ 
Sbjct: 422 TFKLTQPVIGCSCSGSCSPGNHNCSCIRKNDGDLPYLNGVILVSRRPVIYECGPTCPCHA 481

Query: 475 DCKNRVSQTGLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKARQDGEGSN 534
            CKNRV QTGLK RL+VFKT++RGWGLRS D +RAG+FICEYAGEV D    R  G    
Sbjct: 482 SCKNRVIQTGLKSRLEVFKTRNRGWGLRSWDSLRAGSFICEYAGEVKDNGNLR--GNQEE 539

Query: 535 EDYVFDTTRTYDSFKWNYEPGLIEDDDPSDTTEEYDLPYPLVISAKNVGNVARFMNHSCS 594
           + YVFDT+R ++SFKWNYEP L+++D  ++  EE++LP PL+ISAK  GNVARFMNHSCS
Sbjct: 540 DAYVFDTSRVFNSFKWNYEPELVDEDPSTEVPEEFNLPSPLLISAKKFGNVARFMNHSCS 599

Query: 595 PNVFWQPIIFENNNESFVHVAFFAMRHVPPMTELTYDYGISKSDGGNYEP--HRKKKCLC 652
           PNVFWQP+I E N ES +H+AFFAMRH+PPM ELTYDYGIS +     E   H ++ CLC
Sbjct: 600 PNVFWQPVIREGNGESVIHIAFFAMRHIPPMAELTYDYGISPTSEARDESLLHGQRTCLC 659

Query: 653 GTLKCRGYFG 662
           G+ +CRG FG
Sbjct: 660 GSEQCRGSFG 669
Histone methyltransferase. Methylates 'Lys-9' of histone H3. H3 'Lys-9' methylation represents a specific tag for epigenetic transcriptional repression.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3
>sp|Q9FF80|SUVH1_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 OS=Arabidopsis thaliana GN=SUVH1 PE=2 SV=1 Back     alignment and function description
>sp|Q93YF5|SUVH1_TOBAC Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 OS=Nicotiana tabacum GN=SUVH1 PE=1 SV=1 Back     alignment and function description
>sp|Q9C5P1|SUVH7_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH7 OS=Arabidopsis thaliana GN=SUVH7 PE=2 SV=1 Back     alignment and function description
>sp|Q9C5P0|SUVH8_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH8 OS=Arabidopsis thaliana GN=SUVH8 PE=3 SV=1 Back     alignment and function description
>sp|Q8VZ17|SUVH6_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 OS=Arabidopsis thaliana GN=SUVH6 PE=2 SV=2 Back     alignment and function description
>sp|O82175|SUVH5_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 OS=Arabidopsis thaliana GN=SUVH5 PE=1 SV=1 Back     alignment and function description
>sp|Q9T0G7|SUVH9_ARATH Probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9 OS=Arabidopsis thaliana GN=SUVH9 PE=2 SV=1 Back     alignment and function description
>sp|O22781|SUVH2_ARATH Histone-lysine N-methyltransferase, H3 lysine-9, H3 lysine-27, H4 lysine-20 and cytosine specific SUVH2 OS=Arabidopsis thaliana GN=SUVH2 PE=1 SV=1 Back     alignment and function description
>sp|Q8GZB6|SUVH4_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 OS=Arabidopsis thaliana GN=SUVH4 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query662
255569225681 histone-lysine n-methyltransferase, suvh 0.978 0.951 0.686 0.0
224146413669 SET domain protein [Populus trichocarpa] 0.962 0.952 0.679 0.0
224073090653 SET domain protein [Populus trichocarpa] 0.954 0.967 0.670 0.0
225465387716 PREDICTED: histone-lysine N-methyltransf 0.989 0.914 0.647 0.0
356508242667 PREDICTED: histone-lysine N-methyltransf 0.972 0.965 0.587 0.0
224057196512 SET domain protein [Populus trichocarpa] 0.765 0.990 0.736 0.0
225440250737 PREDICTED: histone-lysine N-methyltransf 0.963 0.865 0.543 0.0
18410265669 histone-lysine N-methyltransferase, H3 l 0.959 0.949 0.576 0.0
13517747669 SUVH3 [Arabidopsis thaliana] 0.959 0.949 0.576 0.0
356556749673 PREDICTED: histone-lysine N-methyltransf 0.971 0.955 0.577 0.0
>gi|255569225|ref|XP_002525581.1| histone-lysine n-methyltransferase, suvh, putative [Ricinus communis] gi|223535160|gb|EEF36840.1| histone-lysine n-methyltransferase, suvh, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  973 bits (2516), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/679 (68%), Positives = 565/679 (83%), Gaps = 31/679 (4%)

Query: 6   PSAPLDKTKVLDVKPLRSLRPVLPSSPQAPPFVCAPPFGPFPPGFSPFYPFSTPEFT--- 62
           PS+  DK++VLDVKPLR+L PV P+SPQ PPF+CAPP GPFP GFSPFYPF+ P+     
Sbjct: 12  PSSTFDKSRVLDVKPLRTLVPVFPNSPQTPPFICAPPNGPFPSGFSPFYPFNGPQLAATT 71

Query: 63  -----PDNNQNNNTQTPPTSFATPIRSFRSPDVNF-VDGSNGDLGSSDGFLD---GKKRR 113
                PD NQ   T TP      P+RSFR+P  N  V     + G+SDG      G+ R 
Sbjct: 72  TASTPPDLNQE--THTP-----APLRSFRAPQSNGGVSRGGNEEGTSDGRPKRPVGRPRN 124

Query: 114 TSSYKQKRPK-------NAQDSDFSVGISSFERDDGNRQVVNNVLMRFDALRRRISQIED 166
           ++S  QKR K       +  D++F  GI+  +R+DG+R VV N++MRFDALRRR+SQ+ED
Sbjct: 125 STSSSQKRAKKDLDFTLSVVDNNFVAGITPSQREDGDRGVVINIMMRFDALRRRLSQLED 184

Query: 167 AKETSTGLIRRADLKASNILMSKGVRTNMRKRLGVVPGVEIGDIFFFRMEMCLIGLHSQS 226
           +KE  TGLI+RADLKA N+LMSKGVR+NMRKR+G VPGVEIGDIFFFRMEMC+IGLHSQS
Sbjct: 185 SKEAPTGLIKRADLKAGNVLMSKGVRSNMRKRIGAVPGVEIGDIFFFRMEMCVIGLHSQS 244

Query: 227 MAGIDYMITRSDLDEEPVAVSIISSGGYDDDAEDSDILIYSGQGGNANRKGEQAADQKLE 286
           MAGIDYMI R D+DE+P+AVSI+SSGGYDD+AED D+LIYSGQGGNAN   ++AADQKLE
Sbjct: 245 MAGIDYMIVRGDIDEDPLAVSIVSSGGYDDEAEDRDVLIYSGQGGNANSNKKEAADQKLE 304

Query: 287 RGNLALERSLRRASEVRVIRGMKDAINQSSKVYVYDGLYTVQESWTEKGKSGCNIFKYKL 346
           RGNLALERSL RA+EVRVIRGMKD ++Q++KVY+YDGLY +QESW +KGKSGCNIFKYKL
Sbjct: 305 RGNLALERSLHRANEVRVIRGMKDTLSQAAKVYMYDGLYRIQESWVDKGKSGCNIFKYKL 364

Query: 347 VRIPGQPGAFALWKLIQRWKDGMSGRVGLILPDLSSGAEAIPIALINDVDDEKGPAYFTY 406
           VR+PGQPGAF++WK IQ+WK+G+S RVGLILPDL+SGAE +P++L+NDVD+EKGPAYFTY
Sbjct: 365 VRVPGQPGAFSVWKSIQQWKEGISTRVGLILPDLTSGAETLPVSLVNDVDEEKGPAYFTY 424

Query: 407 LTTVKYSKSFRLTQPSFGCNCYSACGPGNPNCSCVQKNGGDFPYTANGVLVSRKPLIYEC 466
             TVKY KSF+LT+PS+GCNC +AC PG+ +CSC++KNGGDFPYTANGVLVSR+PL++EC
Sbjct: 425 FPTVKYIKSFKLTEPSYGCNCRNACSPGDLDCSCIRKNGGDFPYTANGVLVSRRPLVHEC 484

Query: 467 GPSCPCNRDCKNRVSQTGLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKA 526
           GP+CPC  +CKNRVSQTGLKVRL+VFKTKDRGWGLRS DPIR+GTFICEYAGEV++K K 
Sbjct: 485 GPTCPCIPNCKNRVSQTGLKVRLEVFKTKDRGWGLRSWDPIRSGTFICEYAGEVIEKVKG 544

Query: 527 RQDGEGSNEDYVFDTTRTYDSFKWNYEPGLIEDDDPSDTTEEYDLPYPLVISAKNVGNVA 586
           +QDGEG +E YVFDTTR Y+ FKWN EPGL+E+ D +D TEE ++P PL+ISA+NVGNVA
Sbjct: 545 KQDGEGEDE-YVFDTTRVYEPFKWNCEPGLVEEGD-NDITEECNIPSPLIISARNVGNVA 602

Query: 587 RFMNHSCSPNVFWQPIIFENNNESFVHVAFFAMRHVPPMTELTYDYGISKSD---GGNYE 643
           RFMNHSC+PNVFWQP+ +E+N+ES+VH+AFFA+RH+PPMTELTYDYGIS+SD   G N  
Sbjct: 603 RFMNHSCNPNVFWQPVAYEHNSESYVHIAFFAVRHIPPMTELTYDYGISRSDEAEGNNNV 662

Query: 644 PHRKKKCLCGTLKCRGYFG 662
            H +KKCLCG+ KCRG FG
Sbjct: 663 QHGRKKCLCGSQKCRGSFG 681

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224146413|ref|XP_002336307.1| SET domain protein [Populus trichocarpa] gi|222834460|gb|EEE72937.1| SET domain protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224073090|ref|XP_002303967.1| SET domain protein [Populus trichocarpa] gi|222841399|gb|EEE78946.1| SET domain protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225465387|ref|XP_002273935.1| PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356508242|ref|XP_003522868.1| PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1-like [Glycine max] Back     alignment and taxonomy information
>gi|224057196|ref|XP_002299167.1| SET domain protein [Populus trichocarpa] gi|222846425|gb|EEE83972.1| SET domain protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225440250|ref|XP_002278728.1| PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|18410265|ref|NP_565056.1| histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 [Arabidopsis thaliana] gi|30580525|sp|Q9C5P4.2|SUVH3_ARATH RecName: Full=Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3; AltName: Full=Histone H3-K9 methyltransferase 3; Short=H3-K9-HMTase 3; AltName: Full=Protein SET DOMAIN GROUP 19; AltName: Full=Suppressor of variegation 3-9 homolog protein 3; Short=Su(var)3-9 homolog protein 3 gi|5903099|gb|AAD55657.1|AC008017_30 Unknown protein [Arabidopsis thaliana] gi|20466308|gb|AAM20471.1| unknown protein [Arabidopsis thaliana] gi|25083988|gb|AAN72148.1| unknown protein [Arabidopsis thaliana] gi|332197293|gb|AEE35414.1| histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|13517747|gb|AAK28968.1|AF344446_1 SUVH3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356556749|ref|XP_003546685.1| PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query662
TAIR|locus:2175289670 SUVH1 "SU(VAR)3-9 homolog 1" [ 0.862 0.852 0.617 2.5e-210
TAIR|locus:2032592669 SUVH3 "SU(VAR)3-9 homolog 3" [ 0.862 0.853 0.575 5.2e-199
TAIR|locus:2030953693 SUVH7 "SU(VAR)3-9 homolog 7" [ 0.803 0.767 0.457 1.9e-129
TAIR|locus:2063384794 SUVH5 "SU(VAR)3-9 homolog 5" [ 0.602 0.502 0.447 6.4e-106
TAIR|locus:2065988790 SUVH6 "SU(VAR)3-9 homolog 6" [ 0.809 0.678 0.401 1.3e-100
TAIR|locus:2140827650 SUVH9 "SU(VAR)3-9 homolog 9" [ 0.759 0.773 0.4 1.4e-94
TAIR|locus:2047266755 SDG21 "SET domain group 21" [A 0.555 0.487 0.487 5e-92
TAIR|locus:2051083651 SUVH2 "SU(VAR)3-9 homolog 2" [ 0.764 0.777 0.390 1.7e-91
TAIR|locus:2159133624 SUVH4 "SU(VAR)3-9 homolog 4" [ 0.722 0.766 0.363 4.8e-78
TAIR|locus:2064676312 SDG11 "SET domain protein 11" 0.317 0.673 0.449 6e-70
TAIR|locus:2175289 SUVH1 "SU(VAR)3-9 homolog 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1961 (695.4 bits), Expect = 2.5e-210, Sum P(2) = 2.5e-210
 Identities = 363/588 (61%), Positives = 459/588 (78%)

Query:    77 SFATPIRSFRSPDVNFVXXXXXXXXXXXXXXXXKKRRTSSYKQKRPKNAQDSDFSVGISS 136
             S  TP+RSFRSPDV+                  KKR  S     RP+N    +F  GI+ 
Sbjct:    98 SLVTPLRSFRSPDVS--NGNAELEGSTVKRRIPKKRPIS-----RPENM---NFESGINV 147

Query:   137 FERDDGNRQVVNNVLMRFDALRRRISQIEDAKETSTGLIRRADLKASNILMSKGVRTNMR 196
              +R++GNR++V +VLMRFDALRRR +Q+EDAKE  +G+I+R DLK+ +  M +GVRTN +
Sbjct:   148 ADRENGNRELVLSVLMRFDALRRRFAQLEDAKEAVSGIIKRPDLKSGSTCMGRGVRTNTK 207

Query:   197 KRLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDD 256
             KR G+VPGVEIGD+FFFR EMCL+GLHS SMAGIDY++ + + +EEP+A SI+SSG YD+
Sbjct:   208 KRPGIVPGVEIGDVFFFRFEMCLVGLHSPSMAGIDYLVVKGETEEEPIATSIVSSGYYDN 267

Query:   257 DAEDSDILIYSGQGGNANRKGEQAADQKLERGNLALERSLRRASEVRVIRGMKDAINQSS 316
             D  + D+LIY+GQGGNA+ K +Q++DQKLERGNLALE+SLRR S VRVIRG+K+A + ++
Sbjct:   268 DEGNPDVLIYTGQGGNAD-KDKQSSDQKLERGNLALEKSLRRDSAVRVIRGLKEA-SHNA 325

Query:   317 KVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQPGAFALWKLIQRWKDGMSGRVGLI 376
             K+Y+YDGLY ++ESW EKGKSG N FKYKLVR PGQP AFA W  IQ+WK G+  R GLI
Sbjct:   326 KIYIYDGLYEIKESWVEKGKSGHNTFKYKLVRAPGQPPAFASWTAIQKWKTGVPSRQGLI 385

Query:   377 LPDLSSGAEAIPIALINDVDDEKGPAYFTYLTTVKYSKSFRLTQPSFGCNCYSACGPGNP 436
             LPD++SG E+IP++L+N+VD + GPAYFTY TTVKYS+SF+L QPSFGC+C + C PGN 
Sbjct:   386 LPDMTSGVESIPVSLVNEVDTDNGPAYFTYSTTVKYSESFKLMQPSFGCDCANLCKPGNL 445

Query:   437 NCSCVQKNGGDFPYTANGVLVSRKPLIYECGPSCPCNRDCKNRVSQTGLKVRLDVFKTKD 496
             +C C++KNGGDFPYT NG+LVSRKP+IYEC PSCPC+  CKN+V+Q G+KVRL+VFKT +
Sbjct:   446 DCHCIRKNGGDFPYTGNGILVSRKPMIYECSPSCPCST-CKNKVTQMGVKVRLEVFKTAN 504

Query:   497 RGWGLRSLDPIRAGTFICEYAGEVVDKFKARQDGEGSNEDYVFDTTRTYDSFKWNYEPGL 556
             RGWGLRS D IRAG+FIC Y GE  DK K +Q    +N+DY FDTT  Y+ FKWNYEPGL
Sbjct:   505 RGWGLRSWDAIRAGSFICIYVGEAKDKSKVQQTM--ANDDYTFDTTNVYNPFKWNYEPGL 562

Query:   557 IEDDDPSDTTEEYDLPYPLVISAKNVGNVARFMNHSCSPNVFWQPIIFENNNESFVHVAF 616
              ++D   + +EE ++P PL+ISAKNVGNVARFMNHSCSPNVFWQP+ +ENN++ FVHVAF
Sbjct:   563 ADEDACEEMSEESEIPLPLIISAKNVGNVARFMNHSCSPNVFWQPVSYENNSQLFVHVAF 622

Query:   617 FAMRHVPPMTELTYDYGISKSDGG-NYEP-HRKKKCLCGTLKCRGYFG 662
             FA+ H+PPMTELTYDYG+S+  G  N  P + K+KC CG+  CRG FG
Sbjct:   623 FAISHIPPMTELTYDYGVSRPSGTQNGNPLYGKRKCFCGSAYCRGSFG 670
GO:0005634 "nucleus" evidence=ISM;IEA;IDA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA
GO:0034968 "histone lysine methylation" evidence=IEA
GO:0042054 "histone methyltransferase activity" evidence=ISS
GO:0042393 "histone binding" evidence=IEA
GO:0040029 "regulation of gene expression, epigenetic" evidence=TAS
TAIR|locus:2032592 SUVH3 "SU(VAR)3-9 homolog 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030953 SUVH7 "SU(VAR)3-9 homolog 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2063384 SUVH5 "SU(VAR)3-9 homolog 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2065988 SUVH6 "SU(VAR)3-9 homolog 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2140827 SUVH9 "SU(VAR)3-9 homolog 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047266 SDG21 "SET domain group 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2051083 SUVH2 "SU(VAR)3-9 homolog 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2159133 SUVH4 "SU(VAR)3-9 homolog 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064676 SDG11 "SET domain protein 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C5P4SUVH3_ARATH2, ., 1, ., 1, ., 4, 30.57610.95920.9491yesno
Q93YF5SUVH1_TOBAC2, ., 1, ., 1, ., 4, 30.51710.95010.8934N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.1.430.991
3rd Layer2.1.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
SDG948
SET domain protein (669 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query662
pfam02182154 pfam02182, YDG_SRA, YDG/SRA domain 1e-76
smart00466155 smart00466, SRA, SET and RING finger associated do 4e-73
pfam05033103 pfam05033, Pre-SET, Pre-SET motif 2e-33
smart00317124 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest 7e-32
pfam00856113 pfam00856, SET, SET domain 9e-28
smart0046898 smart00468, PreSET, N-terminal to some SET domains 2e-24
COG2940480 COG2940, COG2940, Proteins containing SET domain [ 6e-15
>gnl|CDD|216920 pfam02182, YDG_SRA, YDG/SRA domain Back     alignment and domain information 
 Score =  241 bits (617), Expect = 1e-76
 Identities = 87/158 (55%), Positives = 114/158 (72%), Gaps = 6/158 (3%)

Query: 197 KRLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDD 256
           KR+G VPGVE+GDIFF+R+E+C++GLH    AGID M      +   +A SI+SSGGY+D
Sbjct: 1   KRIGHVPGVEVGDIFFYRVELCVVGLHRPHQAGIDGM----KSEGGTIATSIVSSGGYED 56

Query: 257 DAEDSDILIYSGQGGNANRKGEQAADQKLERGNLALERSLRRASEVRVIRGMKDAINQS- 315
           D ++ D+L+Y+GQGGN     +Q+ DQKLERGNLAL  S R+ + VRVIRG K   + + 
Sbjct: 57  DEDNGDVLVYTGQGGNDLSGNKQSEDQKLERGNLALANSCRKGNPVRVIRGEKGPSSHAP 116

Query: 316 -SKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQ 352
              +Y YDGLY V++ W EKGKSG  +FK+KLVRIPGQ
Sbjct: 117 KGGIYRYDGLYRVEKYWREKGKSGFKVFKFKLVRIPGQ 154

The function of this domain is unknown, it contains a conserved motif YDG after which it has been named. Length = 154
>gnl|CDD|197742 smart00466, SRA, SET and RING finger associated domain Back     alignment and domain information
>gnl|CDD|218393 pfam05033, Pre-SET, Pre-SET motif Back     alignment and domain information
>gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>gnl|CDD|216155 pfam00856, SET, SET domain Back     alignment and domain information
>gnl|CDD|128744 smart00468, PreSET, N-terminal to some SET domains Back     alignment and domain information
>gnl|CDD|225491 COG2940, COG2940, Proteins containing SET domain [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 662
smart00466155 SRA SET and RING finger associated domain. Domain 100.0
KOG1082364 consensus Histone H3 (Lys9) methyltransferase SUV3 100.0
PF02182155 SAD_SRA: SAD/SRA domain; InterPro: IPR003105 This 100.0
KOG4442 729 consensus Clathrin coat binding protein/Huntingtin 100.0
KOG1141 1262 consensus Predicted histone methyl transferase [Ch 100.0
KOG10801005 consensus Histone H3 (Lys4) methyltransferase comp 99.94
KOG1079739 consensus Transcriptional repressor EZH1 [Transcri 99.93
smart00317116 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) 99.87
KOG10831306 consensus Putative transcription factor ASH1/LIN-5 99.85
PF05033103 Pre-SET: Pre-SET motif; InterPro: IPR007728 This r 99.84
smart0046898 PreSET N-terminal to some SET domains. A Cys-rich 99.83
KOG1085392 consensus Predicted methyltransferase (contains a 99.64
COG2940480 Proteins containing SET domain [General function p 99.62
PF00856162 SET: SET domain; InterPro: IPR001214 The SET domai 99.32
KOG11411262 consensus Predicted histone methyl transferase [Ch 98.92
KOG1081463 consensus Transcription factor NSD1 and related SE 98.84
KOG2589 453 consensus Histone tail methylase [Chromatin struct 98.34
KOG2461 396 consensus Transcription factor BLIMP-1/PRDI-BF1, c 97.72
smart0050826 PostSET Cysteine-rich motif following a subset of 96.24
COG3440301 Predicted restriction endonuclease [Defense mechan 94.79
smart0057051 AWS associated with SET domains. subdomain of PRES 94.34
KOG2084 482 consensus Predicted histone tail methylase contain 90.86
>smart00466 SRA SET and RING finger associated domain Back     alignment and domain information 
Probab=100.00  E-value=5.8e-58  Score=436.65  Aligned_cols=153  Identities=58%  Similarity=1.001  Sum_probs=145.9

Q ss_pred             CcccccCCCccCCceechhhhhhhhccccCCcCCcccccccCCCCCCCeEEEEEecCCCCCCCCCCCeEEEEcCCCCCCC
Q 006089          196 RKRLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDAEDSDILIYSGQGGNANR  275 (662)
Q Consensus       196 ~k~~G~vpGv~vGd~f~~R~e~~~~GlH~~~~~GI~~~~~~~~~~~~~~A~SIV~SGgy~dd~D~gd~l~YtG~GG~~~~  275 (662)
                      .|+||+||||+|||+|++|+||+++|||+++|+||||++.+   +++++|+|||+||||+||+|+||+|+|||+||++. 
T Consensus         2 ~~~~G~vpGv~vGd~f~~R~el~~~GlH~~~~~GI~~~~~~---~~~~~A~SIV~SggYedd~D~gd~liYtG~gg~~~-   77 (155)
T smart00466        2 KHIFGPVPGVEVGDIFFFRVELCLVGLHRPTQAGIDGLTAD---EGEPGATSVVSSGGYEDDTDDGDVLIYTGQGGRDM-   77 (155)
T ss_pred             CceEeCCCCccCCCEEcchhHhhhhcccCcccCCccccccc---CCCccEEEEEECCCccCcccCCCEEEEEccCCccC-
Confidence            58899999999999999999999999999999999999864   56799999999999999999999999999999965 


Q ss_pred             CCCcccCcccchhhHHHHHHHHhCCccEEEeccc-cccCCCCceeeecCceeeeeeEEecCCCCceEEEEEeeecCCC
Q 006089          276 KGEQAADQKLERGNLALERSLRRASEVRVIRGMK-DAINQSSKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQ  352 (662)
Q Consensus       276 ~~~~~~DQ~l~~gNlAL~~S~~~~~pVRViRg~~-~~~~~~~~~y~YDGLY~V~~~w~e~g~~G~~v~kfkL~R~pgQ  352 (662)
                      +++|..||+|++||+||++|+++++|||||||++ ...+.+.++|||||||+|+++|.++|++|+.||||+|+|+|||
T Consensus        78 ~~~~~~dQkl~~gNlAL~~S~~~~~PVRViRg~~~~~~~~p~~gyrYDGLY~V~~~w~e~g~~G~~v~kfkL~R~~gQ  155 (155)
T smart00466       78 THGQPEDQKLERGNLALEASCRKGIPVRVVRGMKGYSKYAPGKGYIYDGLYRIVDYWREVGKSGFLVFKFKLVRIPGQ  155 (155)
T ss_pred             CCCCccccEecchhHHHHHHHhcCCceEEEccccccCCCCCCCeEEECcEEEEEEEEEecCCCCcEEEEEEEEeCCCC
Confidence            6789999999999999999999999999999999 5567899999999999999999999999999999999999998

Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533. Domain in SET domain containing proteins and in Deinococcus radiodurans DRA1533.
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PF02182 SAD_SRA: SAD/SRA domain; InterPro: IPR003105 This domain has been termed SRA-YDG, for SET and Ring finger Associated, and because of the conserved YDG motif within the domain Back     alignment and domain information
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription] Back     alignment and domain information
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription] Back     alignment and domain information
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain Back     alignment and domain information
>smart00468 PreSET N-terminal to some SET domains Back     alignment and domain information
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] Back     alignment and domain information
>COG2940 Proteins containing SET domain [General function prediction only] Back     alignment and domain information
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription] Back     alignment and domain information
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription] Back     alignment and domain information
>smart00508 PostSET Cysteine-rich motif following a subset of SET domains Back     alignment and domain information
>COG3440 Predicted restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>smart00570 AWS associated with SET domains Back     alignment and domain information
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query662
3q0c_X167 Crystal Structure Of Suvh5 Sra-Fully Methylated Cg 4e-41
3q0b_X167 Crystal Structure Of Suvh5 Sra- Fully Methylated Cg 3e-39
1mvh_A299 Structure Of The Set Domain Histone Lysine Methyltr 3e-36
3hna_A287 Crystal Structure Of Catalytic Domain Of Human Euch 2e-32
2igq_A285 Human Euchromatic Histone Methyltransferase 1 Lengt 2e-32
3fpd_A261 G9a-Like Protein Lysine Methyltransferase Inhibitio 4e-32
2o8j_A281 Human Euchromatic Histone Methyltransferase 2 Lengt 1e-31
3k5k_A283 Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazolin 1e-31
4i51_A286 Methyltransferase Domain Of Human Euchromatic Histo 2e-31
1ml9_A302 Structure Of The Neurospora Set Domain Protein Dim- 2e-30
2r3a_A300 Methyltransferase Domain Of Human Suppressor Of Var 2e-27
3bo5_A290 Crystal Structure Of Methyltransferase Domain Of Hu 7e-23
4fmu_A278 Crystal Structure Of Methyltransferase Domain Of Hu 7e-21
3ope_A222 Structural Basis Of Auto-Inhibitory Mechanism Of Hi 3e-20
3ooi_A232 Crystal Structure Of Human Histone-Lysine N-Methylt 6e-18
2pb7_A239 Crystal Structure Of The Sra Domain Of The Human Uh 3e-17
3clz_A212 The Set And Ring Associated (Sra) Domain Of Uhrf1 B 5e-17
3dwh_A208 Structural And Functional Analysis Of Sra Domain Le 5e-17
3bi7_A212 Crystal Structure Of The Sra Domain Of E3 Ubiquitin 9e-17
2zo0_B212 Mouse Np95 Sra Domain Dna Specific Complex 1 Length 3e-16
3f8j_B212 Mouse Uhrf1 Sra Domain Bound With Hemi-methylated C 4e-16
2zkd_A210 Crystal Structure Of The Sra Domain Of Mouse Np95 I 4e-16
2w5y_A192 Binary Complex Of The Mixed Lineage Leukaemia (Mll1 1e-11
3oln_A231 Crystal Structure Of The Sra Domain Of E3 Ubiquitin 2e-09
>pdb|3Q0C|X Chain X, Crystal Structure Of Suvh5 Sra-Fully Methylated Cg Dna Complex In Space Group P6122 Length = 167 Back     alignment and structure 
Iteration: 1

 Score =  166 bits (420), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 88/160 (55%), Positives = 112/160 (70%), Gaps = 8/160 (5%)
Query: 199 LGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDA 258
           +G VPGVE+GD F +RME+ L+G+H  S +GIDYM    D   E VA SI+SSGGY+D  
Sbjct: 3   IGTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYM---KDDGGELVATSIVSSGGYNDVL 59
Query: 259 EDSDILIYSGQGGNANRK--GEQAADQKLERGNLALERSLRRASEVRVIRGMKDAINQSS 316
           ++SD+LIY+GQGGN  +K   E   DQ+L  GNLAL+ S+ + + VRVIRG+K+   QSS
Sbjct: 60  DNSDVLIYTGQGGNVGKKKNNEPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSS 119
Query: 317 ---KVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQP 353
              K YVYDGLY V+E W E G  G  +FK+KL RIPGQP
Sbjct: 120 VVAKNYVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPGQP 159
>pdb|3Q0B|X Chain X, Crystal Structure Of Suvh5 Sra- Fully Methylated Cg Dna Complex In Space Group P42212 Length = 167 Back     alignment and structure
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase Clr4 Length = 299 Back     alignment and structure
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic Histone Methyltransferase 1 In Complex With Sah And Mono- Methylated H3k9 Peptide Length = 287 Back     alignment and structure
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1 Length = 285 Back     alignment and structure
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix- 01294 Length = 261 Back     alignment and structure
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2 Length = 281 Back     alignment and structure
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A Potent Inhibitor Of Histone Lysine Methyltransferase, G9a Length = 283 Back     alignment and structure
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone Methyltransferase 1, Mutant Y1211a Length = 286 Back     alignment and structure
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A Histone Lysine Methyltransferase Length = 302 Back     alignment and structure
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of Variegation 3-9 Homolog 2 Length = 300 Back     alignment and structure
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Histone-Lysine N-Methyltransferase Setmar Length = 290 Back     alignment and structure
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set Domain- Containing Protein 2 Compound: Pr-Snf Length = 278 Back     alignment and structure
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone Methyltransferase Length = 222 Back     alignment and structure
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine N-Methyltransferase Nsd1 Set Domain In Complex With S-Adenosyl-L-Methionine Length = 232 Back     alignment and structure
>pdb|2PB7|A Chain A, Crystal Structure Of The Sra Domain Of The Human Uhrf1 Protein Length = 239 Back     alignment and structure
>pdb|3CLZ|A Chain A, The Set And Ring Associated (Sra) Domain Of Uhrf1 Bound To Methylated Dna Length = 212 Back     alignment and structure
>pdb|3DWH|A Chain A, Structural And Functional Analysis Of Sra Domain Length = 208 Back     alignment and structure
>pdb|3BI7|A Chain A, Crystal Structure Of The Sra Domain Of E3 Ubiquitin-Protein Ligase Uhrf1 Length = 212 Back     alignment and structure
>pdb|2ZO0|B Chain B, Mouse Np95 Sra Domain Dna Specific Complex 1 Length = 212 Back     alignment and structure
>pdb|3F8J|B Chain B, Mouse Uhrf1 Sra Domain Bound With Hemi-methylated Cpg, Crystal Structure In Space Group C222(1) Length = 212 Back     alignment and structure
>pdb|2ZKD|A Chain A, Crystal Structure Of The Sra Domain Of Mouse Np95 In Complex With Hemi-Methylated Cpg Dna Length = 210 Back     alignment and structure
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set Domain With The Cofactor Product S-Adenosylhomocysteine. Length = 192 Back     alignment and structure
>pdb|3OLN|A Chain A, Crystal Structure Of The Sra Domain Of E3 Ubiquitin-Protein Ligase Uhrf2 Length = 231 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query662
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 1e-101
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 2e-94
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 3e-94
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 2e-89
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 5e-88
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 2e-72
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 7e-68
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 6e-63
2pb7_A239 E3 ubiquitin-protein ligase UHRF1; beta barrel, NE 4e-59
3q0b_X167 Histone-lysine N-methyltransferase, H3 lysine-9 S 5e-56
3oln_A231 E3 ubiquitin-protein ligase UHRF2; DNA-binding, me 2e-54
3fde_A212 E3 ubiquitin-protein ligase UHRF1; SRA domain, bas 3e-51
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 2e-40
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 3e-35
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 1e-24
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 2e-24
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 7e-22
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 8e-19
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 2e-13
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 4e-12
3dal_A196 PR domain zinc finger protein 1; methyltransferase 9e-11
3db5_A151 PR domain zinc finger protein 4; methyltransferase 4e-10
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 3e-09
3ray_A237 PR domain-containing protein 11; structural genomi 3e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
3qwp_A 429 SET and MYND domain-containing protein 3; SMYD3,SE 6e-04
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Length = 299 Back     alignment and structure
 Score =  309 bits (792), Expect = e-101
 Identities = 91/304 (29%), Positives = 144/304 (47%), Gaps = 39/304 (12%)

Query: 376 ILPDLSSGAEAIPIALINDVDDEKGPAY-FTYLTTVKYSKSFRLTQPSF--GCNC--YSA 430
           +        E   + L+N+VDDE  P+  F +++  + ++      P+F  GCNC     
Sbjct: 17  LFRKKLREIEGPEVTLVNEVDDEPCPSLDFQFISQYRLTQGVIPPDPNFQSGCNCSSLGG 76

Query: 431 CGPGNP-NCSCVQK--NGGDFPYTANG-VLVSRKPLIYECGPSCPCNRDCKNRVSQTGLK 486
           C   NP  C C+        F Y A G V      +IYEC   C C+ +C NRV Q G  
Sbjct: 77  CDLNNPSRCECLDDLDEPTHFAYDAQGRVRADTGAVIYECNSFCSCSMECPNRVVQRGRT 136

Query: 487 VRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKARQDGEGSNEDYVFDTTRTYD 546
           + L++FKTK++GWG+RSL    AGTFI  Y GEV+   +A +  +  ++D          
Sbjct: 137 LPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDDG--------- 187

Query: 547 SFKWNYEPGLIEDDDPSDTTEEYDLPYPLVISAKNVGNVARFMNHSCSPNVFWQPIIFEN 606
              + ++  + +D                 + A+N G+V+RF NHSCSPN+     +  +
Sbjct: 188 -ITYLFDLDMFDDAS------------EYTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNH 234

Query: 607 NNESFVHVAFFAMRHVPPMTELTYDYGI--------SKSDGGNYEPHRKKKCLCGTLKCR 658
              +   +AFFA++ + P+ ELT+DY          S+    N     +++C CG+  CR
Sbjct: 235 GFRTIYDLAFFAIKDIQPLEELTFDYAGAKDFSPVQSQKSQQNRISKLRRQCKCGSANCR 294

Query: 659 GYFG 662
           G+  
Sbjct: 295 GWLF 298
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Length = 302 Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Length = 287 Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Length = 290 Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Length = 300 Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Length = 222 Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Length = 232 Back     alignment and structure
>2pb7_A E3 ubiquitin-protein ligase UHRF1; beta barrel, NEW fold; 1.90A {Homo sapiens} SCOP: b.122.1.12 Length = 239 Back     alignment and structure
>3q0b_X Histone-lysine N-methyltransferase, H3 lysine-9 S SUVH5; SRA, fully methylated CG, SUVH5, 5MC binding protein, fully methylated CG duplex DNA; HET: DNA 5CM; 2.20A {Arabidopsis thaliana} PDB: 3q0c_X* 3q0d_X* 3q0f_X* Length = 167 Back     alignment and structure
>3oln_A E3 ubiquitin-protein ligase UHRF2; DNA-binding, metal-binding, nucleus, phosphorylation transcription, transcription regulation; 2.30A {Homo sapiens} Length = 231 Back     alignment and structure
>3fde_A E3 ubiquitin-protein ligase UHRF1; SRA domain, base flipping, DNA CPG methylation, cell cycle, developmental protein, DNA damage; HET: 5CM; 1.41A {Mus musculus} PDB: 2zo0_B* 2zo2_B* 3f8i_A* 2zo1_B* 3f8j_B* 2zkd_A* 2zke_A* 2zkf_A* 2zkg_A 3dwh_A 3bi7_A 3clz_A* Length = 212 Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Length = 192 Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* Length = 166 Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Length = 273 Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119 Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Length = 247 Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Length = 261 Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Length = 149 Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Length = 170 Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Length = 196 Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Length = 151 Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Length = 152 Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Length = 237 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query662
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 100.0
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 100.0
3q0b_X167 Histone-lysine N-methyltransferase, H3 lysine-9 S 100.0
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 100.0
2pb7_A239 E3 ubiquitin-protein ligase UHRF1; beta barrel, NE 100.0
3fde_A212 E3 ubiquitin-protein ligase UHRF1; SRA domain, bas 100.0
3oln_A231 E3 ubiquitin-protein ligase UHRF2; DNA-binding, me 100.0
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 100.0
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 100.0
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 100.0
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 100.0
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 100.0
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 100.0
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 99.97
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 99.94
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 99.93
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 99.93
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 99.91
1h3i_A293 Histone H3 lysine 4 specific methyltransferase; 2. 99.91
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 99.85
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 99.75
3db5_A151 PR domain zinc finger protein 4; methyltransferase 99.72
3dal_A196 PR domain zinc finger protein 1; methyltransferase 99.7
3ray_A237 PR domain-containing protein 11; structural genomi 99.57
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 99.41
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 98.55
3qwp_A 429 SET and MYND domain-containing protein 3; SMYD3,SE 98.51
3qww_A 433 SET and MYND domain-containing protein 2; methyltr 98.41
3qxy_A 449 N-lysine methyltransferase SETD6; epigenetics, pro 95.79
2h21_A 440 Ribulose-1,5 bisphosphate carboxylase/oxygenase; S 94.7
3smt_A 497 Histone-lysine N-methyltransferase SETD3; histone 94.24
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure
Probab=100.00  E-value=1.3e-63  Score=521.56  Aligned_cols=269  Identities=35%  Similarity=0.677  Sum_probs=232.0

Q ss_pred             hhhhhhhhhhc---c----CCCCccccccCCCCCCcCCCCCccccCCCCCCCCCCcEEcceeccCCCcCCC---CCCCCC
Q 006089          356 FALWKLIQRWK---D----GMSGRVGLILPDLSSGAEAIPIALINDVDDEKGPAYFTYLTTVKYSKSFRLT---QPSFGC  425 (662)
Q Consensus       356 ~~~w~~~~~~~---~----~~~~r~~~i~~DiS~G~E~~PI~~vN~VD~~~~P~~F~Yi~~~~~~~~~~~~---~~~~gC  425 (662)
                      ..+|.+++..+   .    .++.++++|+.|||+|+|++||+|+|+||++.+|..|+|+++..+..++.+.   .+..||
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dis~G~E~~pi~~~N~vD~~~~p~~f~Y~~~~~~~~~~~~~~~~~~~~gC   83 (287)
T 3hna_A            4 SQVWSALQMSKALQDSAPDRPSPVERIVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYC   83 (287)
T ss_dssp             HHHHHHHHHHHHC-------CCCCCEEEESCTTTTCSSSCCCEEESSSSCCCCCSSEECSSCEESSCCCCCCBGGGCCCC
T ss_pred             chhHHhhhhhHHhHhhcccCccccCCEEhHhhCCCCCCCCEEEEeCCCCCCCCCCcEEccccccCCCccccccCCCCCCC
Confidence            35788777432   2    2467889999999999999999999999999989999999998887765432   245799


Q ss_pred             CCCCCCcCCCCCcccccccCCCCcccCCceeec-----CCCceeecCCCCCCCCCCCCcccccCceeeEEEEecCCCCCe
Q 006089          426 NCYSACGPGNPNCSCVQKNGGDFPYTANGVLVS-----RKPLIYECGPSCPCNRDCKNRVSQTGLKVRLDVFKTKDRGWG  500 (662)
Q Consensus       426 ~C~~~C~~~~~~C~C~~~n~g~~~Y~~~G~L~~-----~~~~i~EC~~~C~C~~~C~NRv~Q~G~k~~LeVfrT~~kGwG  500 (662)
                      +|.++|.+  .+|+|.+++. .++|+.+|+|+.     .+++||||++.|+|+.+|.||++|+|++.+|+||+|+.+|||
T Consensus        84 ~C~~~C~~--~~C~C~~~~~-~~~y~~~g~l~~~~~~~~~~~i~EC~~~C~C~~~C~Nr~~q~g~~~~l~v~~t~~kG~G  160 (287)
T 3hna_A           84 VCIDDCSS--SNCMCGQLSM-RCWYDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLRARLQLYRTRDMGWG  160 (287)
T ss_dssp             CCSSSSCS--TTCHHHHHTS-SCCBCTTSCBCTTCCSSSCCCEECCCTTSSSCTTCSSCSGGGCCCSCEEEEECSSSSEE
T ss_pred             cCcCCCCC--CCCcCcccCc-ccccCCCCcccccccccCCceEEecCCCCCCCCCCCCcccCcCCcccEEEEEcCCCceE
Confidence            99999986  5899998874 589999999874     467899999999999999999999999999999999999999


Q ss_pred             eEeCCccCCCceEEEeecEEeeHHhHhhhcCCCCCceeeecccccccccccCCCCCccCCCCCCCccccCCCCCEEEecc
Q 006089          501 LRSLDPIRAGTFICEYAGEVVDKFKARQDGEGSNEDYVFDTTRTYDSFKWNYEPGLIEDDDPSDTTEEYDLPYPLVISAK  580 (662)
Q Consensus       501 VrA~~~I~~GtfIcEY~GEvit~~e~~~~~~~~~d~Ylfd~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~~IDA~  580 (662)
                      |||+++|++|+||+||+|||++.++++.+   ..+.|+|++....                          ...++|||+
T Consensus       161 v~A~~~I~~G~~I~eY~Gevi~~~e~~~r---~~~~Y~f~l~~~~--------------------------~~~~~IDa~  211 (287)
T 3hna_A          161 VRSLQDIPPGTFVCEYVGELISDSEADVR---EEDSYLFDLDNKD--------------------------GEVYCIDAR  211 (287)
T ss_dssp             EEESSCBCTTCEEEEECEEEEEHHHHHTC---SCCTTEEESCCSS--------------------------SSCEEEEEE
T ss_pred             EEeCcccCCCCEEEEeeeEEccHHHHhhh---cccceEEEeccCC--------------------------CceEEEecc
Confidence            99999999999999999999999988754   3578888643110                          124799999


Q ss_pred             ccCChhhcccCCCCCCceeEEEEEecCCCceeEEEEEEeecCCCCcEEEEecCCCCCCCCCCCCCCCeEeecCCCCCccc
Q 006089          581 NVGNVARFMNHSCSPNVFWQPIIFENNNESFVHVAFFAMRHVPPMTELTYDYGISKSDGGNYEPHRKKKCLCGTLKCRGY  660 (662)
Q Consensus       581 ~~GNvaRFINHSC~PN~~~q~V~~d~~d~~~p~I~~FA~RdI~~GEELT~DYg~~~~~~~~~~~~~~~~C~CGS~~CrG~  660 (662)
                      .+||++|||||||+||+.++.|++++.+...++|+|||+|||++||||||||+..+|..    ..+.+.|+|||++|||.
T Consensus       212 ~~GN~aRFiNHSC~PN~~~~~v~~~~~d~~~~~i~~~A~RdI~~GEELT~dYg~~~~~~----~~~~~~C~CGs~~CRgs  287 (287)
T 3hna_A          212 FYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDI----KGKLFSCRCGSPKCRHS  287 (287)
T ss_dssp             EEECGGGGCEECSSCSEEEEEEESSCCCTTCCEEEEEESSCBCTTCBCEECCCHHHHHH----HTTTCCCCCCCTTCSCC
T ss_pred             ccCCchheeeecCCCCceeEEEEEecCCCCceeEEEEEcceeCCCCeEEEeCCCccccc----CCCcCEeeCCCCCCCCC
Confidence            99999999999999999999999988888999999999999999999999999876642    12468999999999985
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
>3q0b_X Histone-lysine N-methyltransferase, H3 lysine-9 S SUVH5; SRA, fully methylated CG, SUVH5, 5MC binding protein, fully methylated CG duplex DNA; HET: DNA 5CM; 2.20A {Arabidopsis thaliana} PDB: 3q0c_X* 3q0d_X* 3q0f_X* Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Back     alignment and structure
>2pb7_A E3 ubiquitin-protein ligase UHRF1; beta barrel, NEW fold; 1.90A {Homo sapiens} SCOP: b.122.1.12 Back     alignment and structure
>3fde_A E3 ubiquitin-protein ligase UHRF1; SRA domain, base flipping, DNA CPG methylation, cell cycle, developmental protein, DNA damage; HET: 5CM; 1.41A {Mus musculus} SCOP: b.122.1.12 PDB: 2zo0_B* 2zo2_B* 3f8i_A* 2zo1_B* 3f8j_B* 2zkd_A* 2zke_A* 2zkf_A* 2zkg_A 3dwh_A 3bi7_A 3clz_A* Back     alignment and structure
>3oln_A E3 ubiquitin-protein ligase UHRF2; DNA-binding, metal-binding, nucleus, phosphorylation transcription, transcription regulation; 2.30A {Homo sapiens} SCOP: b.122.1.12 Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Back     alignment and structure
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Back     alignment and structure
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Back     alignment and structure
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 662
d1ml9a_284 b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T 1e-65
d2zkda1209 b.122.1.12 (A:405-613) E3 ubiquitin-protein ligase 8e-62
d1mvha_269 b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S 4e-57
d2f69a2171 b.85.7.1 (A:194-364) Histone H3 K4-specific methyl 9e-26
d2g46a1119 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth 2e-14
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284 Back     information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Dim-5
species: Fungus (Neurospora crassa) [TaxId: 5141]

 Score =  215 bits (549), Expect = 1e-65
 Identities = 77/294 (26%), Positives = 124/294 (42%), Gaps = 39/294 (13%)

Query: 387 IPIALINDVDDEKGPAYFTYLTTVKYSKSFRLTQPSF--GCNCYSACGPGNPNCSCVQKN 444
           +PI+++N  DD      F ++      K+  +   SF  GC+C S        C C+ + 
Sbjct: 2   LPISIVNREDDAFLNPNFRFIDHSIIGKNVPVADQSFRVGCSCASDEECMYSTCQCLDEM 61

Query: 445 GGD-------------FPYTANG--------VLVSRKPLIYECGPSCPCNRDCKNRVSQT 483
             D             F Y + G         ++  +  IYEC   C C++DC NRV + 
Sbjct: 62  APDSDEEADPYTRKKRFAYYSQGAKKGLLRDRVLQSQEPIYECHQGCACSKDCPNRVVER 121

Query: 484 GLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKARQDGEGSNEDYVFDTTR 543
           G  V L +F+TKDRGWG++    I+ G F+  Y GE++   +A +    S      D   
Sbjct: 122 GRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTIARRKDV-- 179

Query: 544 TYDSFKWNYEPGLIEDDDPSDTTEEYDLPYPLVISAKNVGNVARFMNHSCSPNVFWQPII 603
                 + +      D D  D         PL +  + +    RF+NHSC PN+     +
Sbjct: 180 ------YLFALDKFSDPDSLDPLLAGQ---PLEVDGEYMSGPTRFINHSCDPNMAIFARV 230

Query: 604 FENNNESFVHVAFFAMRHVPPMTELTYDYGISKSD-----GGNYEPHRKKKCLC 652
            ++ ++    +A FA++ +P  TELT+DY    +          +     KCLC
Sbjct: 231 GDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLC 284
>d2zkda1 b.122.1.12 (A:405-613) E3 ubiquitin-protein ligase UHRF1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 209 Back     information, alignment and structure
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269 Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171 Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query662
d2zkda1209 E3 ubiquitin-protein ligase UHRF1 {Mouse (Mus musc 100.0
d1ml9a_284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 100.0
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 100.0
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 99.92
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 99.85
d2h2ja2261 RuBisCo LSMT catalytic domain {Garden pea (Pisum s 97.92
>d2zkda1 b.122.1.12 (A:405-613) E3 ubiquitin-protein ligase UHRF1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: SRA domain-like
domain: E3 ubiquitin-protein ligase UHRF1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.8e-57  Score=443.24  Aligned_cols=162  Identities=33%  Similarity=0.596  Sum_probs=149.0

Q ss_pred             hcCcccCCCcccccCCCccCCceechhhhhhhhccccCCcCCcccccccCCCCCCCeEEEEEecCCCCCCCCCCCeEEEE
Q 006089          188 SKGVRTNMRKRLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDAEDSDILIYS  267 (662)
Q Consensus       188 ~~~~~~n~~k~~G~vpGv~vGd~f~~R~e~~~~GlH~~~~~GI~~~~~~~~~~~~~~A~SIV~SGgy~dd~D~gd~l~Yt  267 (662)
                      ++...+++.|+||+||||+|||+|++|+||+++|||+++|+||+|++.       .+|+|||+||||+||+|+||+|+||
T Consensus         8 ~~~~~~~p~~~~G~vpGv~VGd~F~~R~el~~~GlH~~~~aGI~g~~~-------~GA~SIV~SGgYeDD~D~gd~liYT   80 (209)
T d2zkda1           8 TTECTIVPANHFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSN-------DGAYSLVLAGGYEDDVDNGNYFTYT   80 (209)
T ss_dssp             SCCCCSSCTTCCSCCTTCCTTCEESSHHHHHHTTSSCCSSCSEEEETT-------TEEEEEEECSCSTTCEECSSEEEEE
T ss_pred             cceEEeCCCCcccCCCCCCCCCEECCHHHHHHcCCCCCccCcEeecCC-------CceEEEEECCCccccccCCcEEEEE
Confidence            344567899999999999999999999999999999999999999764       6899999999999999999999999


Q ss_pred             cCCCCCCC----CCCcccCcccchhhHHHHHH--------------HHhCCccEEEecccc---ccCCCCceeeecCcee
Q 006089          268 GQGGNANR----KGEQAADQKLERGNLALERS--------------LRRASEVRVIRGMKD---AINQSSKVYVYDGLYT  326 (662)
Q Consensus       268 G~GG~~~~----~~~~~~DQ~l~~gNlAL~~S--------------~~~~~pVRViRg~~~---~~~~~~~~y~YDGLY~  326 (662)
                      ||||++..    +..|..||+|++||+||++|              +++++|||||||++.   ..+.+.++|||||||+
T Consensus        81 G~GG~d~~~~k~~~~q~~DQkl~~gNlAL~~Sc~~~~n~~~~~~~~~~~g~PVRVIRg~k~~~~~~~~p~~gYrYDGLY~  160 (209)
T d2zkda1          81 GSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGKPVRVVRNMKGGKHSKYAPAEGNRYDGIYK  160 (209)
T ss_dssp             CSCCBCCTTTCSCCCBCSCCCSSHHHHHHHHTSSSCCCTTCEECTTGGGSCCEEEEEEGGGGGTCTTSCSSSEEEEEEEE
T ss_pred             CCCCccccCCccccccccceeeccchHHHhhccccccccccchhhhhhcCCceEEEEeeccccCCCcCCCceEEeCcEEE
Confidence            99999643    33589999999999999999              789999999999974   3567899999999999


Q ss_pred             eeeeEEecCCCCceEEEEEeeecCCCCCch
Q 006089          327 VQESWTEKGKSGCNIFKYKLVRIPGQPGAF  356 (662)
Q Consensus       327 V~~~w~e~g~~G~~v~kfkL~R~pgQp~~~  356 (662)
                      |+++|.++|++|+.||||+|+|+||||+.+
T Consensus       161 V~~~w~e~gk~G~~V~rF~L~R~~gQp~p~  190 (209)
T d2zkda1         161 VVKYWPERGKSGFLVWRYLLRRDDTEPEPW  190 (209)
T ss_dssp             EEEEEEEECTTSSEEEEEEEEECCSSCCTT
T ss_pred             EEEEEEccCCCCcEEEEEEEEECCCCCCCc
Confidence            999999999999999999999999999873
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure